Query 003170
Match_columns 842
No_of_seqs 151 out of 162
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 15:49:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003170.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003170hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmr_A Cugbp ELAV-like family 99.9 2.6E-23 8.7E-28 191.2 15.8 143 252-402 1-161 (175)
2 1fxl_A Paraneoplastic encephal 99.9 4.2E-23 1.4E-27 187.9 15.6 142 253-403 1-156 (167)
3 3md3_A Nuclear and cytoplasmic 99.9 1E-22 3.4E-27 185.2 14.4 142 255-403 1-155 (166)
4 1b7f_A Protein (SXL-lethal pro 99.9 1.1E-22 3.7E-27 186.4 14.6 142 253-403 2-157 (168)
5 3tyt_A Heterogeneous nuclear r 99.9 5.3E-22 1.8E-26 195.5 17.5 152 252-403 2-191 (205)
6 4f02_A Polyadenylate-binding p 99.9 1.7E-22 6E-27 196.9 13.0 145 252-403 13-169 (213)
7 2qfj_A FBP-interacting repress 99.9 3.4E-22 1.2E-26 190.5 12.7 153 251-403 25-193 (216)
8 2yh0_A Splicing factor U2AF 65 99.9 9.7E-22 3.3E-26 185.0 14.1 151 252-403 2-182 (198)
9 2g4b_A Splicing factor U2AF 65 99.9 8.8E-22 3E-26 181.4 13.3 142 252-403 2-162 (172)
10 3pgw_A U1-A; protein-RNA compl 99.9 1.7E-21 6E-26 194.9 16.5 152 250-403 5-270 (282)
11 2adc_A Polypyrimidine tract-bi 99.9 2.8E-21 9.5E-26 190.3 16.6 151 251-403 31-215 (229)
12 2ghp_A U4/U6 snRNA-associated 99.9 9.7E-22 3.3E-26 197.7 13.5 191 247-458 34-243 (292)
13 1qm9_A Polypyrimidine tract-bi 99.9 3.2E-21 1.1E-25 183.2 16.0 149 253-403 2-184 (198)
14 3smz_A Protein raver-1, ribonu 99.9 7.7E-22 2.6E-26 197.6 10.5 180 204-403 59-252 (284)
15 3smz_A Protein raver-1, ribonu 99.9 7.8E-21 2.7E-25 190.4 17.6 182 251-458 19-217 (284)
16 3sde_A Paraspeckle component 1 99.9 4.3E-21 1.5E-25 192.7 15.1 137 250-401 18-161 (261)
17 1l3k_A Heterogeneous nuclear r 99.9 3.4E-21 1.2E-25 181.0 13.3 148 250-402 9-170 (196)
18 1fje_B Nucleolin RBD12, protei 99.9 3.2E-21 1.1E-25 179.0 13.0 142 251-403 10-162 (175)
19 2ghp_A U4/U6 snRNA-associated 99.8 3.1E-21 1E-25 194.0 10.8 182 203-403 82-279 (292)
20 2cjk_A Nuclear polyadenylated 99.8 3.9E-21 1.3E-25 176.4 10.4 137 253-402 2-153 (167)
21 4f25_A Polyadenylate-binding p 99.7 3.3E-18 1.1E-22 153.5 8.7 101 253-354 4-112 (115)
22 2hvz_A Splicing factor, argini 99.6 3.8E-16 1.3E-20 135.5 9.0 93 255-348 1-100 (101)
23 3r27_A HnRNP L, heterogeneous 99.6 9.2E-16 3.2E-20 138.7 9.7 75 249-323 16-96 (100)
24 1wex_A Hypothetical protein (r 99.6 1.3E-15 4.4E-20 136.8 10.2 76 249-324 10-91 (104)
25 2cpj_A Non-POU domain-containi 99.6 1.9E-15 6.3E-20 131.0 10.3 77 247-323 8-88 (99)
26 4fxv_A ELAV-like protein 1; RN 99.6 1.3E-15 4.5E-20 134.3 8.8 73 251-323 16-98 (99)
27 2ytc_A PRE-mRNA-splicing facto 99.6 1.6E-15 5.4E-20 127.2 8.8 74 248-321 6-84 (85)
28 2cq1_A PTB-like protein L; RRM 99.6 2.6E-15 8.7E-20 134.4 10.4 76 248-323 9-90 (101)
29 1x4d_A Matrin 3; structural ge 99.6 1E-15 3.5E-20 137.9 7.8 72 252-323 13-91 (102)
30 2cq2_A Hypothetical protein LO 99.6 1E-15 3.6E-20 141.2 7.5 66 250-315 21-88 (114)
31 1sjq_A Polypyrimidine tract-bi 99.6 1.7E-15 5.6E-20 138.0 7.1 65 249-313 11-75 (105)
32 3lqv_A PRE-mRNA branch site pr 99.6 5.9E-15 2E-19 130.7 10.4 101 251-368 5-112 (115)
33 1why_A Hypothetical protein ri 99.6 4.8E-15 1.6E-19 128.0 9.4 75 250-324 13-93 (97)
34 2cqi_A Nucleolysin TIAR; RNA r 99.6 8E-15 2.7E-19 127.5 10.6 79 246-324 7-93 (103)
35 3s8s_A Histone-lysine N-methyl 99.6 4.3E-15 1.5E-19 133.7 9.0 73 251-323 3-85 (110)
36 1x4f_A Matrin 3; structural ge 99.6 3.2E-15 1.1E-19 137.3 8.2 73 251-323 22-101 (112)
37 2la4_A Nuclear and cytoplasmic 99.6 3.3E-15 1.1E-19 129.5 7.4 68 249-316 22-89 (101)
38 2ad9_A Polypyrimidine tract-bi 99.6 5.3E-15 1.8E-19 137.1 9.2 74 250-323 27-106 (119)
39 1x5s_A Cold-inducible RNA-bind 99.6 8.7E-15 3E-19 126.8 9.9 79 246-324 4-92 (102)
40 2wbr_A GW182, gawky, LD47780P; 99.6 3.1E-15 1.1E-19 133.7 7.1 69 253-321 6-78 (89)
41 3bs9_A Nucleolysin TIA-1 isofo 99.6 6.7E-15 2.3E-19 123.6 8.7 73 251-323 3-85 (87)
42 3mdf_A Peptidyl-prolyl CIS-tra 99.6 7.5E-15 2.6E-19 122.8 8.7 71 251-321 4-84 (85)
43 3md1_A Nuclear and cytoplasmic 99.6 7E-15 2.4E-19 122.4 8.5 70 254-323 1-80 (83)
44 2cqc_A Arginine/serine-rich sp 99.6 5.7E-15 2E-19 125.9 8.0 77 247-323 8-94 (95)
45 2cph_A RNA binding motif prote 99.6 1.1E-14 3.8E-19 126.8 10.0 79 246-324 7-97 (107)
46 1whx_A Hypothetical protein ri 99.6 1.9E-15 6.3E-20 135.3 5.0 72 253-324 9-84 (111)
47 2x1f_A MRNA 3'-END-processing 99.6 8E-15 2.7E-19 126.3 8.8 71 253-323 1-81 (96)
48 2ywk_A Putative RNA-binding pr 99.6 6.7E-15 2.3E-19 125.7 8.2 76 248-323 10-94 (95)
49 2cq3_A RNA-binding protein 9; 99.6 1.7E-14 5.9E-19 125.4 10.9 77 248-324 9-93 (103)
50 2e5h_A Zinc finger CCHC-type a 99.6 1.1E-14 3.9E-19 124.0 9.5 74 248-321 10-93 (94)
51 2dnz_A Probable RNA-binding pr 99.6 1.8E-14 6.2E-19 123.0 10.6 73 252-324 3-85 (95)
52 2cqb_A Peptidyl-prolyl CIS-tra 99.5 8.2E-15 2.8E-19 127.0 8.6 77 248-324 6-92 (102)
53 2d9p_A Polyadenylate-binding p 99.5 1.4E-14 4.7E-19 126.0 9.7 76 249-324 10-93 (103)
54 1x4g_A Nucleolysin TIAR; struc 99.5 8.7E-15 3E-19 129.1 8.5 75 250-324 21-99 (109)
55 2dnq_A RNA-binding protein 4B; 99.5 1.6E-14 5.5E-19 123.1 9.9 72 251-324 5-80 (90)
56 2cpf_A RNA binding motif prote 99.5 8.1E-15 2.8E-19 126.2 7.6 73 252-324 3-88 (98)
57 3nmr_A Cugbp ELAV-like family 99.5 5.5E-15 1.9E-19 135.8 6.9 115 204-322 49-175 (175)
58 1x4a_A Splicing factor, argini 99.5 2.5E-14 8.5E-19 125.9 10.8 75 250-324 18-99 (109)
59 2la6_A RNA-binding protein FUS 99.5 2.3E-14 7.9E-19 124.1 10.4 78 244-321 3-98 (99)
60 1x5t_A Splicing factor 3B subu 99.5 1E-14 3.4E-19 124.9 7.9 73 252-324 3-86 (96)
61 2i2y_A Fusion protein consists 99.5 5.4E-15 1.9E-19 137.1 6.4 130 193-323 5-147 (150)
62 2dgx_A KIAA0430 protein; RRM d 99.5 1.5E-14 5.1E-19 125.5 8.6 75 250-324 5-90 (96)
63 2dgp_A Bruno-like 4, RNA bindi 99.5 1.9E-14 6.5E-19 125.5 9.3 76 249-324 8-96 (106)
64 1nu4_A U1A RNA binding domain; 99.5 1.3E-14 4.4E-19 124.4 7.9 74 250-323 4-88 (97)
65 4a8x_A RNA-binding protein wit 99.5 1.6E-14 5.4E-19 121.2 8.3 71 253-323 3-84 (88)
66 1p27_B RNA-binding protein 8A; 99.5 2.2E-14 7.6E-19 125.0 9.4 78 246-323 15-102 (106)
67 2dnh_A Bruno-like 5, RNA bindi 99.5 2.2E-14 7.6E-19 124.8 9.3 73 252-324 13-97 (105)
68 2xnq_A Nuclear polyadenylated 99.5 2.4E-14 8.3E-19 125.1 9.5 74 248-323 16-94 (97)
69 2kvi_A Nuclear polyadenylated 99.5 2.1E-14 7.2E-19 124.2 8.8 75 248-324 4-83 (96)
70 1x4h_A RNA-binding protein 28; 99.5 2.2E-14 7.4E-19 125.8 9.0 79 245-323 6-100 (111)
71 2dnp_A RNA-binding protein 14; 99.5 3E-14 1E-18 121.4 9.6 74 249-324 4-81 (90)
72 2do0_A HnRNP M, heterogeneous 99.5 2.9E-14 1E-18 125.8 9.7 78 246-323 7-93 (114)
73 2dgv_A HnRNP M, heterogeneous 99.5 1.6E-14 5.4E-19 122.7 7.7 74 251-324 5-86 (92)
74 2cpe_A RNA-binding protein EWS 99.5 2.4E-14 8.3E-19 126.4 9.1 83 242-324 3-103 (113)
75 2fy1_A RNA-binding motif prote 99.5 3.4E-14 1.2E-18 128.0 10.2 74 251-324 4-86 (116)
76 2cqh_A IGF-II mRNA-binding pro 99.5 1.2E-14 4E-19 124.3 6.7 73 251-324 5-83 (93)
77 2dgo_A Cytotoxic granule-assoc 99.5 3.2E-14 1.1E-18 126.0 9.7 76 249-324 10-95 (115)
78 2cq0_A Eukaryotic translation 99.5 3.2E-14 1.1E-18 123.8 9.4 76 249-324 10-95 (103)
79 2dgt_A RNA-binding protein 30; 99.5 3.8E-14 1.3E-18 121.2 9.7 72 251-324 7-82 (92)
80 2a3j_A U1 small nuclear ribonu 99.5 2.3E-14 7.7E-19 133.2 8.9 73 251-323 26-109 (127)
81 1x4e_A RNA binding motif, sing 99.5 1E-14 3.4E-19 122.6 5.9 65 252-316 3-73 (85)
82 3md3_A Nuclear and cytoplasmic 99.5 9.9E-15 3.4E-19 132.6 6.3 113 204-322 43-165 (166)
83 2div_A TRNA selenocysteine ass 99.5 3.7E-14 1.3E-18 122.3 9.3 74 251-324 6-94 (99)
84 2err_A Ataxin-2-binding protei 99.5 3.3E-14 1.1E-18 126.4 9.3 75 249-323 24-106 (109)
85 1wf1_A RNA-binding protein RAL 99.5 2.5E-14 8.5E-19 126.3 8.4 73 249-323 22-99 (110)
86 2dgs_A DAZ-associated protein 99.5 4.2E-14 1.4E-18 122.2 9.6 73 251-324 7-89 (99)
87 3ulh_A THO complex subunit 4; 99.5 3.1E-14 1.1E-18 124.3 8.9 74 248-321 23-105 (107)
88 1whw_A Hypothetical protein ri 99.5 2.7E-14 9.2E-19 123.1 8.4 73 252-324 6-88 (99)
89 1u6f_A Tcubp1, RNA-binding pro 99.5 3.2E-14 1.1E-18 129.9 9.1 74 251-324 39-122 (139)
90 3ex7_B RNA-binding protein 8A; 99.5 4.2E-14 1.4E-18 127.1 9.7 82 243-324 11-102 (126)
91 2lxi_A RNA-binding protein 10; 99.5 1.1E-14 3.9E-19 126.0 5.7 71 254-324 1-83 (91)
92 2jvo_A Nucleolar protein 3; nu 99.5 3.2E-14 1.1E-18 127.0 8.7 72 250-323 27-102 (108)
93 1oo0_B CG8781-PA, drosophila Y 99.5 4E-14 1.4E-18 124.5 9.2 78 247-324 19-106 (110)
94 1x5p_A Negative elongation fac 99.5 4.6E-14 1.6E-18 122.1 9.4 73 250-324 11-87 (97)
95 2do4_A Squamous cell carcinoma 99.5 4.3E-14 1.5E-18 122.3 9.0 74 251-324 14-96 (100)
96 2e5j_A Methenyltetrahydrofolat 99.5 4.9E-14 1.7E-18 121.9 9.3 73 251-323 16-93 (97)
97 1x5o_A RNA binding motif, sing 99.5 7.4E-14 2.5E-18 123.5 10.7 75 249-323 20-111 (114)
98 1fjc_A Nucleolin RBD2, protein 99.5 2E-14 6.7E-19 123.3 6.7 82 243-324 5-91 (96)
99 2dnm_A SRP46 splicing factor; 99.5 3.6E-14 1.2E-18 123.4 8.4 74 251-324 10-93 (103)
100 2hzc_A Splicing factor U2AF 65 99.5 2.6E-14 8.9E-19 120.0 7.2 65 251-316 3-78 (87)
101 2dgu_A Heterogeneous nuclear r 99.5 3.7E-14 1.3E-18 123.9 8.1 72 251-324 8-83 (103)
102 1p1t_A Cleavage stimulation fa 99.5 1.9E-14 6.4E-19 124.8 6.1 73 251-323 5-87 (104)
103 2cpi_A CCR4-NOT transcription 99.5 3E-14 1E-18 126.8 7.4 73 252-324 13-101 (111)
104 1x5u_A Splicing factor 3B subu 99.5 6.8E-14 2.3E-18 121.8 9.5 77 248-324 9-95 (105)
105 2dis_A Unnamed protein product 99.5 3.8E-14 1.3E-18 124.2 7.7 74 251-324 5-92 (109)
106 2cpd_A Apobec-1 stimulating pr 99.5 7.4E-14 2.5E-18 120.9 9.5 75 248-324 9-89 (99)
107 2cpz_A CUG triplet repeat RNA- 99.5 7.4E-14 2.5E-18 123.9 9.7 75 250-324 21-105 (115)
108 2e5i_A Heterogeneous nuclear r 99.5 7.3E-14 2.5E-18 130.2 10.0 75 249-323 18-101 (124)
109 1x4c_A Splicing factor, argini 99.5 9.9E-14 3.4E-18 122.6 10.4 72 251-323 12-92 (108)
110 2krb_A Eukaryotic translation 99.5 2.5E-14 8.6E-19 119.9 6.2 62 254-315 1-72 (81)
111 2kn4_A Immunoglobulin G-bindin 99.5 9.3E-15 3.2E-19 135.8 3.9 120 205-324 16-150 (158)
112 2kt5_A RNA and export factor-b 99.5 9.4E-14 3.2E-18 125.0 10.3 74 250-323 31-113 (124)
113 2khc_A Testis-specific RNP-typ 99.5 3.7E-14 1.2E-18 126.1 7.5 72 250-321 36-117 (118)
114 2ek1_A RNA-binding protein 12; 99.5 2.6E-14 8.8E-19 122.1 6.0 71 252-322 13-93 (95)
115 2lkz_A RNA-binding protein 5; 99.5 5.1E-14 1.7E-18 124.5 8.0 71 253-323 8-94 (95)
116 4f02_A Polyadenylate-binding p 99.5 1.2E-14 4.2E-19 141.6 4.3 113 204-322 59-179 (213)
117 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 6.5E-14 2.2E-18 126.8 8.6 70 247-316 56-131 (140)
118 2jrs_A RNA-binding protein 39; 99.5 7.7E-14 2.6E-18 124.3 8.5 75 249-323 21-105 (108)
119 2g4b_A Splicing factor U2AF 65 99.5 2.5E-14 8.5E-19 131.7 5.5 105 203-316 52-162 (172)
120 2dhg_A TRNA selenocysteine ass 99.5 4.5E-14 1.5E-18 122.7 6.5 73 251-323 6-89 (104)
121 1wi8_A EIF-4B, eukaryotic tran 99.5 1.1E-13 3.8E-18 120.8 9.0 73 250-324 11-94 (104)
122 3tht_A Alkylated DNA repair pr 99.5 6E-14 2E-18 150.5 8.8 70 246-315 10-81 (345)
123 2qfj_A FBP-interacting repress 99.5 4.2E-14 1.4E-18 134.7 6.7 117 204-324 72-205 (216)
124 3ucg_A Polyadenylate-binding p 99.5 4.6E-14 1.6E-18 118.9 6.1 70 253-323 5-84 (89)
125 1wg1_A KIAA1579 protein, homol 99.5 8.4E-14 2.9E-18 118.7 7.7 71 252-323 3-77 (88)
126 3ns6_A Eukaryotic translation 99.5 5.4E-14 1.8E-18 123.3 6.7 64 252-315 4-79 (100)
127 3zzy_A Polypyrimidine tract-bi 99.5 1.1E-13 3.7E-18 130.5 9.0 77 247-323 21-105 (130)
128 2kxn_B Transformer-2 protein h 99.5 9.1E-14 3.1E-18 128.1 8.3 75 249-323 41-125 (129)
129 1sjr_A Polypyrimidine tract-bi 99.5 8.6E-14 2.9E-18 136.0 8.4 73 251-323 43-123 (164)
130 2jvr_A Nucleolar protein 3; RN 99.5 7.7E-14 2.6E-18 127.0 7.5 71 252-322 26-103 (111)
131 3p5t_L Cleavage and polyadenyl 99.4 5E-14 1.7E-18 120.5 5.5 69 255-323 2-82 (90)
132 2lea_A Serine/arginine-rich sp 99.4 7.5E-14 2.6E-18 129.3 7.1 111 205-324 7-127 (135)
133 1fxl_A Paraneoplastic encephal 99.4 3.6E-14 1.2E-18 129.1 4.8 105 204-316 46-156 (167)
134 1h2v_Z 20 kDa nuclear CAP bind 99.4 2.2E-13 7.6E-18 127.1 9.7 76 249-324 34-119 (156)
135 2cqp_A RNA-binding protein 12; 99.4 1.2E-13 4.2E-18 118.8 7.3 71 252-322 13-93 (98)
136 2cqd_A RNA-binding region cont 99.4 3.2E-13 1.1E-17 120.0 10.2 75 249-324 12-96 (116)
137 2dng_A Eukaryotic translation 99.4 2.3E-13 7.8E-18 118.6 9.1 75 248-324 9-93 (103)
138 2yh0_A Splicing factor U2AF 65 99.4 4.8E-14 1.6E-18 132.6 5.1 118 203-324 52-194 (198)
139 1fj7_A Nucleolin RBD1, protein 99.4 2.4E-13 8.2E-18 117.8 9.1 80 244-324 7-95 (101)
140 2nlw_A Eukaryotic translation 99.4 1.4E-13 4.9E-18 121.3 7.8 68 249-316 10-87 (105)
141 2bz2_A Negative elongation fac 99.4 2.2E-13 7.5E-18 124.5 9.1 73 250-324 35-111 (121)
142 1qm9_A Polypyrimidine tract-bi 99.4 1.9E-13 6.6E-18 129.8 8.7 117 204-323 43-196 (198)
143 2cq4_A RNA binding motif prote 99.4 1.2E-13 4.1E-18 122.4 6.8 72 251-323 22-103 (114)
144 1s79_A Lupus LA protein; RRM, 99.4 1.6E-13 5.4E-18 122.4 7.5 65 251-316 8-77 (103)
145 1b7f_A Protein (SXL-lethal pro 99.4 6.3E-14 2.2E-18 128.2 5.0 103 205-315 48-156 (168)
146 2cpx_A Hypothetical protein FL 99.4 2E-13 7E-18 120.6 7.8 74 251-324 22-105 (115)
147 2fc9_A NCL protein; structure 99.4 3.3E-13 1.1E-17 116.9 8.5 75 250-324 11-91 (101)
148 3egn_A RNA-binding protein 40; 99.4 1.8E-13 6.1E-18 126.0 7.0 73 251-323 42-129 (143)
149 3pgw_A U1-A; protein-RNA compl 99.4 2.3E-13 7.9E-18 136.2 8.1 72 251-322 204-281 (282)
150 2dh8_A DAZ-associated protein 99.4 1.9E-13 6.5E-18 119.3 6.4 76 247-323 9-94 (105)
151 2ki2_A SS-DNA binding protein 99.4 1.2E-13 4.1E-18 117.1 4.9 68 255-323 2-79 (90)
152 2jwn_A Embryonic polyadenylate 99.4 1.9E-13 6.6E-18 122.5 6.3 72 252-324 34-115 (124)
153 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1.8E-13 6.2E-18 119.4 5.6 73 249-323 14-97 (100)
154 3s7r_A Heterogeneous nuclear r 99.4 5.6E-13 1.9E-17 112.4 8.3 64 250-314 7-76 (87)
155 3n9u_C Cleavage and polyadenyl 99.4 3.6E-13 1.2E-17 128.3 8.0 72 252-323 53-136 (156)
156 2m2b_A RNA-binding protein 10; 99.4 2.1E-13 7E-18 124.6 6.1 72 251-323 20-107 (131)
157 1uaw_A Mouse-musashi-1; RNP-ty 99.4 3.3E-13 1.1E-17 110.9 6.6 60 255-315 1-66 (77)
158 3beg_B Splicing factor, argini 99.4 3E-13 1E-17 121.5 6.7 64 252-316 14-77 (115)
159 2adc_A Polypyrimidine tract-bi 99.4 2.5E-13 8.6E-18 133.8 6.7 117 204-323 74-227 (229)
160 2cpy_A RNA-binding protein 12; 99.4 5.6E-13 1.9E-17 119.1 8.3 68 248-316 9-82 (114)
161 3u1l_A PRE-mRNA-splicing facto 99.4 4.3E-13 1.5E-17 137.7 8.5 65 251-315 131-204 (240)
162 2cqg_A TDP-43, TAR DNA-binding 99.4 7.3E-13 2.5E-17 115.2 8.7 75 248-323 9-92 (103)
163 2mss_A Protein (musashi1); RNA 99.4 3.5E-13 1.2E-17 110.7 6.2 60 256-316 1-66 (75)
164 1fje_B Nucleolin RBD12, protei 99.4 1.2E-13 3.9E-18 128.3 3.6 113 204-323 56-173 (175)
165 3d2w_A TAR DNA-binding protein 99.4 7.7E-13 2.6E-17 114.3 8.2 60 251-314 8-68 (89)
166 2fc8_A NCL protein; structure 99.4 1.1E-12 3.7E-17 113.6 9.2 76 249-324 10-92 (102)
167 2dnl_A Cytoplasmic polyadenyla 99.4 3.7E-13 1.3E-17 120.2 6.4 62 252-314 6-79 (114)
168 2rs2_A Musashi-1, RNA-binding 99.4 6E-13 2E-17 118.5 7.5 77 246-323 17-103 (109)
169 1rk8_A CG8781-PA, CG8781-PA pr 99.4 9.6E-13 3.3E-17 124.6 9.0 74 251-324 69-152 (165)
170 1wez_A HnRNP H', FTP-3, hetero 99.4 1.8E-12 6.1E-17 114.9 9.8 75 248-324 9-92 (102)
171 2e5g_A U6 snRNA-specific termi 99.4 7.2E-13 2.5E-17 114.0 6.7 64 252-316 6-70 (94)
172 1x4b_A Heterogeneous nuclear r 99.4 1.2E-12 4.2E-17 116.2 8.3 73 251-324 24-106 (116)
173 2dgw_A Probable RNA-binding pr 99.4 1.9E-12 6.7E-17 110.2 8.9 71 251-323 7-86 (91)
174 2cjk_A Nuclear polyadenylated 99.3 1.7E-13 5.9E-18 125.6 2.5 109 204-323 47-165 (167)
175 2e44_A Insulin-like growth fac 99.3 1.8E-12 6.1E-17 111.1 8.6 72 252-323 13-91 (96)
176 2f3j_A RNA and export factor b 99.3 1.8E-12 6.1E-17 125.7 9.7 74 250-323 84-166 (177)
177 1wel_A RNA-binding protein 12; 99.3 1E-12 3.6E-17 118.7 7.5 67 249-316 20-92 (124)
178 1iqt_A AUF1, heterogeneous nuc 99.3 5.6E-13 1.9E-17 109.3 5.0 59 256-315 1-65 (75)
179 3sde_A Paraspeckle component 1 99.3 4.2E-13 1.4E-17 134.9 4.5 107 203-323 59-178 (261)
180 2lcw_A RNA-binding protein FUS 99.0 1.1E-13 3.9E-18 123.2 0.0 74 251-324 4-95 (116)
181 1wf0_A TDP-43, TAR DNA-binding 99.3 9.8E-13 3.3E-17 111.6 5.7 55 252-306 3-58 (88)
182 2xs2_A Deleted in azoospermia- 99.3 5E-13 1.7E-17 116.0 3.2 63 252-314 7-77 (102)
183 2db1_A Heterogeneous nuclear r 99.3 2.6E-12 8.8E-17 116.1 7.9 66 250-316 13-86 (118)
184 3q2s_C Cleavage and polyadenyl 99.3 1.4E-12 4.8E-17 131.1 6.8 71 253-323 67-149 (229)
185 1l3k_A Heterogeneous nuclear r 99.3 1.6E-12 5.6E-17 122.0 6.7 115 204-323 57-182 (196)
186 1wg5_A Heterogeneous nuclear r 99.3 6E-12 2E-16 110.8 8.9 64 252-316 13-82 (104)
187 2hgl_A HNRPF protein, heteroge 99.3 4.3E-12 1.5E-16 119.3 7.8 65 251-316 41-113 (136)
188 2lmi_A GRSF-1, G-rich sequence 99.3 3.2E-12 1.1E-16 113.0 6.4 65 251-316 8-80 (107)
189 2pe8_A Splicing factor 45; RRM 99.3 1.1E-11 3.9E-16 111.3 9.2 73 251-323 5-93 (105)
190 2kn4_A Immunoglobulin G-bindin 99.2 1.7E-11 5.7E-16 113.9 9.4 116 288-403 11-138 (158)
191 3tyt_A Heterogeneous nuclear r 99.2 9.5E-12 3.2E-16 122.6 7.8 66 250-315 119-190 (205)
192 3pgw_S U1-70K; protein-RNA com 99.2 1.1E-11 3.9E-16 135.6 9.1 73 251-323 99-181 (437)
193 2dit_A HIV TAT specific factor 99.2 3.9E-11 1.3E-15 107.1 9.8 74 250-323 11-101 (112)
194 2diu_A KIAA0430 protein; struc 99.2 1.9E-11 6.7E-16 110.7 7.8 69 251-323 5-83 (96)
195 2hgn_A Heterogeneous nuclear r 99.2 8.8E-12 3E-16 117.7 4.9 66 249-316 41-111 (139)
196 2i2y_A Fusion protein consists 99.2 2E-11 7E-16 113.1 7.1 114 288-403 11-136 (150)
197 2dnn_A RNA-binding protein 12; 99.2 2.9E-11 9.9E-16 109.5 7.9 62 253-316 15-81 (109)
198 2dha_A FLJ20171 protein; RRM d 99.2 1.9E-11 6.4E-16 113.2 5.4 63 252-315 21-92 (123)
199 2hgm_A HNRPF protein, heteroge 99.1 1.4E-10 4.9E-15 108.1 7.6 63 251-315 39-108 (126)
200 3v4m_A Splicing factor U2AF 65 99.1 1.7E-10 5.9E-15 103.5 7.8 72 252-323 3-96 (105)
201 2voo_A Lupus LA protein; RNA-b 99.1 1.5E-10 5.1E-15 113.5 7.3 60 253-312 108-172 (193)
202 2d9o_A DNAJ (HSP40) homolog, s 99.0 7.1E-10 2.4E-14 99.6 8.7 61 264-324 27-90 (100)
203 3ue2_A Poly(U)-binding-splicin 99.0 5.1E-10 1.7E-14 103.1 7.9 71 252-322 18-107 (118)
204 1jmt_A Splicing factor U2AF 35 99.0 1.9E-10 6.4E-15 102.9 3.2 58 259-316 20-94 (104)
205 2j8a_A Histone-lysine N-methyl 99.0 5.1E-10 1.7E-14 107.0 5.8 70 255-324 3-96 (136)
206 3s6e_A RNA-binding protein 39; 98.9 1.7E-09 6E-14 99.1 9.0 72 252-323 5-92 (114)
207 2lea_A Serine/arginine-rich sp 98.7 1E-08 3.4E-13 95.0 6.0 102 292-403 6-115 (135)
208 1rk8_A CG8781-PA, CG8781-PA pr 98.7 2.4E-08 8.1E-13 94.5 6.3 109 295-403 11-140 (165)
209 1owx_A Lupus LA protein, SS-B, 98.6 6.2E-08 2.1E-12 90.7 8.9 61 251-311 15-77 (121)
210 1why_A Hypothetical protein ri 98.6 7.8E-08 2.7E-12 82.8 7.8 66 336-403 14-79 (97)
211 3pgw_S U1-70K; protein-RNA com 98.6 1.1E-08 3.9E-13 112.1 2.5 129 270-403 8-170 (437)
212 2cpj_A Non-POU domain-containi 98.5 1.6E-07 5.5E-12 81.1 7.6 65 337-403 13-77 (99)
213 1x4e_A RNA binding motif, sing 98.5 1.1E-07 3.9E-12 79.5 6.4 67 337-403 3-73 (85)
214 1wex_A Hypothetical protein (r 98.5 1.6E-07 5.6E-12 84.1 7.6 63 337-401 13-75 (104)
215 2la4_A Nuclear and cytoplasmic 98.5 1.5E-07 5.1E-12 81.4 7.0 65 337-403 25-89 (101)
216 2dnq_A RNA-binding protein 4B; 98.5 1.6E-07 5.6E-12 79.7 7.2 64 336-403 5-68 (90)
217 3mdf_A Peptidyl-prolyl CIS-tra 98.5 1E-07 3.4E-12 79.5 5.6 68 336-403 4-75 (85)
218 2e5h_A Zinc finger CCHC-type a 98.5 1.7E-07 5.8E-12 79.7 7.0 73 331-403 8-84 (94)
219 2e5j_A Methenyltetrahydrofolat 98.5 2.7E-07 9.4E-12 79.6 7.9 67 336-403 16-82 (97)
220 3r27_A HnRNP L, heterogeneous 98.5 1.7E-07 5.8E-12 84.8 6.9 64 336-401 18-81 (100)
221 1x4d_A Matrin 3; structural ge 98.5 1.3E-07 4.3E-12 85.2 5.8 63 337-401 13-76 (102)
222 2x1f_A MRNA 3'-END-processing 98.5 1.9E-07 6.4E-12 80.3 6.3 66 338-403 1-70 (96)
223 2hvz_A Splicing factor, argini 98.5 2.8E-07 9.6E-12 79.7 7.4 62 340-403 1-63 (101)
224 1whw_A Hypothetical protein ri 98.5 2.3E-07 8E-12 79.7 6.8 68 336-403 5-76 (99)
225 2dnz_A Probable RNA-binding pr 98.5 3.1E-07 1.1E-11 78.2 7.3 67 337-403 3-73 (95)
226 4a8x_A RNA-binding protein wit 98.4 2.3E-07 7.9E-12 77.5 6.1 66 338-403 3-73 (88)
227 2hzc_A Splicing factor U2AF 65 98.4 3.1E-07 1.1E-11 76.8 6.8 67 336-403 3-78 (87)
228 2cq3_A RNA-binding protein 9; 98.4 4.6E-07 1.6E-11 78.6 8.0 68 336-403 12-81 (103)
229 1x5t_A Splicing factor 3B subu 98.4 2.9E-07 1E-11 78.5 6.6 67 337-403 3-74 (96)
230 2dgu_A Heterogeneous nuclear r 98.4 2.6E-07 8.8E-12 80.5 6.4 64 336-403 8-71 (103)
231 2cqi_A Nucleolysin TIAR; RNA r 98.4 4.3E-07 1.5E-11 78.7 7.8 67 337-403 13-81 (103)
232 2div_A TRNA selenocysteine ass 98.4 2.3E-07 7.8E-12 79.8 5.9 68 336-403 6-78 (99)
233 1x4a_A Splicing factor, argini 98.4 4.5E-07 1.5E-11 79.6 7.9 68 336-403 19-87 (109)
234 2ytc_A PRE-mRNA-splicing facto 98.4 2.3E-07 7.7E-12 77.5 5.6 64 337-402 10-74 (85)
235 2cqh_A IGF-II mRNA-binding pro 98.4 2.7E-07 9.2E-12 78.7 6.2 65 336-403 5-71 (93)
236 2dgt_A RNA-binding protein 30; 98.4 3.1E-07 1.1E-11 78.3 6.6 64 336-403 7-70 (92)
237 1whx_A Hypothetical protein ri 98.4 3.4E-07 1.2E-11 81.8 7.1 65 337-403 8-72 (111)
238 3bs9_A Nucleolysin TIA-1 isofo 98.4 2.7E-07 9.2E-12 77.2 5.9 67 337-403 4-74 (87)
239 2jvo_A Nucleolar protein 3; nu 98.4 3.2E-07 1.1E-11 81.8 6.7 63 337-403 29-91 (108)
240 2do0_A HnRNP M, heterogeneous 98.4 3.7E-07 1.3E-11 80.3 7.0 67 337-403 13-82 (114)
241 2cq1_A PTB-like protein L; RRM 98.4 2.6E-07 9E-12 82.5 6.0 63 336-400 12-74 (101)
242 2cpd_A Apobec-1 stimulating pr 98.4 4.6E-07 1.6E-11 78.2 7.2 64 337-403 13-77 (99)
243 2cqc_A Arginine/serine-rich sp 98.4 4.7E-07 1.6E-11 76.9 7.2 68 336-403 12-83 (95)
244 2kvi_A Nuclear polyadenylated 98.4 4E-07 1.4E-11 78.6 6.8 63 337-403 8-71 (96)
245 2krb_A Eukaryotic translation 98.4 2.4E-07 8.3E-12 77.4 5.3 65 339-403 1-73 (81)
246 2dnh_A Bruno-like 5, RNA bindi 98.4 3.4E-07 1.2E-11 79.5 6.3 67 337-403 13-82 (105)
247 2cpf_A RNA binding motif prote 98.4 2.7E-07 9.1E-12 79.2 5.6 67 337-403 3-76 (98)
248 2dnp_A RNA-binding protein 14; 98.4 2.9E-07 1E-11 78.2 5.8 63 337-403 7-69 (90)
249 2lkz_A RNA-binding protein 5; 98.4 4E-07 1.4E-11 80.4 6.8 66 336-401 6-77 (95)
250 2dgv_A HnRNP M, heterogeneous 98.4 4.5E-07 1.5E-11 76.8 6.6 68 336-403 5-74 (92)
251 2d9p_A Polyadenylate-binding p 98.4 4E-07 1.4E-11 78.9 6.5 68 336-403 12-81 (103)
252 2ad9_A Polypyrimidine tract-bi 98.4 3.6E-07 1.2E-11 84.7 6.5 63 336-400 28-90 (119)
253 3md1_A Nuclear and cytoplasmic 98.4 3.9E-07 1.3E-11 75.5 6.1 65 339-403 1-69 (83)
254 1x4g_A Nucleolysin TIAR; struc 98.4 4.2E-07 1.4E-11 79.9 6.6 65 337-403 23-87 (109)
255 1p27_B RNA-binding protein 8A; 98.4 4.7E-07 1.6E-11 78.7 6.8 67 337-403 21-91 (106)
256 2cpx_A Hypothetical protein FL 98.4 4.2E-07 1.4E-11 80.1 6.6 67 337-403 23-93 (115)
257 3dxb_A Thioredoxin N-terminall 98.4 3.7E-07 1.3E-11 89.5 6.9 57 266-322 141-211 (222)
258 1x5s_A Cold-inducible RNA-bind 98.4 6.2E-07 2.1E-11 77.4 7.5 68 336-403 9-80 (102)
259 2cqp_A RNA-binding protein 12; 98.4 5.4E-07 1.8E-11 77.3 7.1 69 335-403 11-83 (98)
260 2dgp_A Bruno-like 4, RNA bindi 98.4 5.2E-07 1.8E-11 78.5 6.9 67 336-402 10-80 (106)
261 2ek1_A RNA-binding protein 12; 98.4 4.1E-07 1.4E-11 77.4 6.0 68 336-403 12-83 (95)
262 2xnq_A Nuclear polyadenylated 98.4 4.3E-07 1.5E-11 79.2 6.3 63 336-402 19-82 (97)
263 2cq2_A Hypothetical protein LO 98.4 3E-07 1E-11 85.0 5.5 64 337-402 23-88 (114)
264 1wf1_A RNA-binding protein RAL 98.4 4.1E-07 1.4E-11 80.1 6.2 63 337-403 25-88 (110)
265 2cqb_A Peptidyl-prolyl CIS-tra 98.4 3.5E-07 1.2E-11 79.0 5.7 68 336-403 9-80 (102)
266 4f25_A Polyadenylate-binding p 98.4 4.2E-07 1.4E-11 81.4 6.3 66 338-403 4-71 (115)
267 2hgl_A HNRPF protein, heteroge 98.4 3.4E-07 1.2E-11 86.1 5.9 107 290-403 1-113 (136)
268 2la6_A RNA-binding protein FUS 98.4 5.6E-07 1.9E-11 77.7 6.8 67 337-403 11-89 (99)
269 1sjq_A Polypyrimidine tract-bi 98.4 4.8E-07 1.6E-11 82.4 6.6 62 337-400 14-75 (105)
270 2dis_A Unnamed protein product 98.4 4.3E-07 1.5E-11 79.3 6.1 66 337-402 6-79 (109)
271 2ywk_A Putative RNA-binding pr 98.4 5.7E-07 2E-11 76.5 6.7 68 336-403 13-83 (95)
272 2do4_A Squamous cell carcinoma 98.4 6E-07 2E-11 77.5 6.9 68 336-403 14-84 (100)
273 3lqv_A PRE-mRNA branch site pr 98.4 5.7E-07 2E-11 79.4 6.8 68 336-403 5-73 (115)
274 2dnm_A SRP46 splicing factor; 98.4 4.4E-07 1.5E-11 78.7 5.9 67 337-403 11-81 (103)
275 2fc9_A NCL protein; structure 98.3 5.1E-07 1.8E-11 78.0 6.2 65 336-403 12-79 (101)
276 1x4c_A Splicing factor, argini 98.3 6.6E-07 2.3E-11 78.9 7.0 63 337-402 13-75 (108)
277 2dgo_A Cytotoxic granule-assoc 98.3 7.7E-07 2.6E-11 78.6 7.4 67 337-403 13-83 (115)
278 1x4f_A Matrin 3; structural ge 98.3 3.5E-07 1.2E-11 84.1 5.3 63 337-401 23-86 (112)
279 4fxv_A ELAV-like protein 1; RN 98.3 4.4E-07 1.5E-11 79.8 5.8 65 339-403 19-87 (99)
280 2cpe_A RNA-binding protein EWS 98.3 9.8E-07 3.4E-11 77.7 8.0 68 336-403 12-91 (113)
281 2cph_A RNA binding motif prote 98.3 6E-07 2.1E-11 78.0 6.4 65 337-403 13-85 (107)
282 2dgs_A DAZ-associated protein 98.3 6.9E-07 2.4E-11 76.9 6.7 67 336-403 7-77 (99)
283 2cpi_A CCR4-NOT transcription 98.3 4.3E-07 1.5E-11 80.6 5.5 71 333-403 9-89 (111)
284 2cq0_A Eukaryotic translation 98.3 4.7E-07 1.6E-11 78.5 5.6 67 337-403 13-83 (103)
285 1x5u_A Splicing factor 3B subu 98.3 6.1E-07 2.1E-11 77.9 6.1 67 337-403 13-83 (105)
286 2err_A Ataxin-2-binding protei 98.3 9.8E-07 3.4E-11 78.3 7.4 69 335-403 25-95 (109)
287 1x4h_A RNA-binding protein 28; 98.3 7.1E-07 2.4E-11 78.0 6.3 67 337-403 13-89 (111)
288 1p1t_A Cleavage stimulation fa 98.3 5.9E-07 2E-11 77.7 5.6 67 337-403 6-76 (104)
289 3s8s_A Histone-lysine N-methyl 98.3 7.6E-07 2.6E-11 80.0 6.4 67 337-403 4-74 (110)
290 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.3 1E-06 3.5E-11 79.6 7.3 68 336-403 60-131 (140)
291 2kt5_A RNA and export factor-b 98.3 1.2E-06 4.2E-11 78.6 7.7 68 336-403 32-102 (124)
292 2lxi_A RNA-binding protein 10; 98.3 6.5E-07 2.2E-11 77.4 5.6 60 339-398 1-65 (91)
293 2cpz_A CUG triplet repeat RNA- 98.3 6.9E-07 2.4E-11 79.1 5.9 67 337-403 23-93 (115)
294 1nu4_A U1A RNA binding domain; 98.3 4.9E-07 1.7E-11 77.2 4.7 67 337-403 6-77 (97)
295 3ulh_A THO complex subunit 4; 98.3 7.1E-07 2.4E-11 77.7 5.8 68 336-403 26-96 (107)
296 3ex7_B RNA-binding protein 8A; 98.3 8.4E-07 2.9E-11 79.5 6.3 65 337-403 20-90 (126)
297 2khc_A Testis-specific RNP-typ 98.3 7.1E-07 2.4E-11 79.2 5.6 67 337-403 38-108 (118)
298 1oo0_B CG8781-PA, drosophila Y 98.3 1E-06 3.5E-11 77.2 6.5 67 337-403 24-94 (110)
299 3ns6_A Eukaryotic translation 98.3 1.2E-06 4E-11 76.7 6.8 67 337-403 4-80 (100)
300 1wg1_A KIAA1579 protein, homol 98.3 7.4E-07 2.5E-11 75.7 5.4 64 337-403 3-66 (88)
301 2dgx_A KIAA0430 protein; RRM d 98.3 1.2E-06 4E-11 75.8 6.8 65 337-403 7-78 (96)
302 2e5g_A U6 snRNA-specific termi 98.3 8.7E-07 3E-11 76.0 5.7 65 337-403 6-70 (94)
303 1fj7_A Nucleolin RBD1, protein 98.3 1.2E-06 4.2E-11 75.6 6.4 66 337-403 15-83 (101)
304 1u6f_A Tcubp1, RNA-binding pro 98.3 9.7E-07 3.3E-11 80.4 6.0 67 337-403 40-110 (139)
305 2fy1_A RNA-binding motif prote 98.2 1.5E-06 5E-11 78.2 7.0 67 337-403 5-74 (116)
306 2dhg_A TRNA selenocysteine ass 98.2 1.1E-06 3.8E-11 76.1 6.0 67 337-403 7-78 (104)
307 2jrs_A RNA-binding protein 39; 98.2 1.3E-06 4.6E-11 77.6 6.6 67 337-403 24-94 (108)
308 1fjc_A Nucleolin RBD2, protein 98.2 8.5E-07 2.9E-11 75.8 5.1 66 337-403 14-79 (96)
309 3beg_B Splicing factor, argini 98.2 1.5E-06 5.1E-11 77.9 6.9 64 337-403 14-77 (115)
310 2cqd_A RNA-binding region cont 98.2 1.1E-06 3.9E-11 77.8 6.0 63 335-399 13-81 (116)
311 2kxn_B Transformer-2 protein h 98.2 1.4E-06 4.6E-11 80.3 6.5 68 336-403 43-114 (129)
312 2jvr_A Nucleolar protein 3; RN 98.2 1.3E-06 4.3E-11 79.6 6.2 67 337-403 26-93 (111)
313 2dnl_A Cytoplasmic polyadenyla 98.2 8.4E-07 2.9E-11 79.1 4.9 65 337-401 6-79 (114)
314 2e44_A Insulin-like growth fac 98.2 1.9E-06 6.6E-11 73.6 6.9 66 337-403 13-80 (96)
315 2nlw_A Eukaryotic translation 98.2 1.4E-06 4.8E-11 76.6 6.1 67 337-403 13-87 (105)
316 1x5o_A RNA binding motif, sing 98.2 1.5E-06 5.1E-11 76.7 5.9 67 337-403 23-92 (114)
317 3p5t_L Cleavage and polyadenyl 98.2 1.3E-06 4.3E-11 74.6 5.1 64 340-403 2-71 (90)
318 3ucg_A Polyadenylate-binding p 98.2 1.8E-06 6.1E-11 72.5 6.0 66 337-403 4-73 (89)
319 1wi8_A EIF-4B, eukaryotic tran 98.2 1.6E-06 5.6E-11 75.4 5.9 66 336-403 12-82 (104)
320 2cq4_A RNA binding motif prote 98.2 1.7E-06 5.9E-11 76.4 5.9 66 337-403 23-92 (114)
321 2dh8_A DAZ-associated protein 98.2 1.7E-06 5.8E-11 75.3 5.6 68 335-403 12-83 (105)
322 3s7r_A Heterogeneous nuclear r 98.2 1.6E-06 5.5E-11 72.8 5.3 60 337-396 9-72 (87)
323 2cqg_A TDP-43, TAR DNA-binding 98.2 2.4E-06 8.2E-11 74.1 6.5 61 336-396 12-76 (103)
324 1h2v_Z 20 kDa nuclear CAP bind 98.2 1.9E-06 6.4E-11 80.3 6.2 67 337-403 37-107 (156)
325 1uaw_A Mouse-musashi-1; RNP-ty 98.2 2E-06 6.8E-11 70.3 5.5 62 340-402 1-66 (77)
326 2fc8_A NCL protein; structure 98.2 2E-06 6.7E-11 74.3 5.6 65 336-403 12-80 (102)
327 2j76_E EIF-4B, EIF4B, eukaryot 98.2 1.2E-06 4.3E-11 76.2 4.3 65 337-403 17-86 (100)
328 2dng_A Eukaryotic translation 98.1 2.1E-06 7.2E-11 74.6 5.5 64 336-403 12-81 (103)
329 3u1l_A PRE-mRNA-splicing facto 98.1 2.3E-06 7.9E-11 88.0 6.5 64 337-402 132-204 (240)
330 3egn_A RNA-binding protein 40; 98.1 2.1E-06 7E-11 78.9 5.5 68 336-403 42-118 (143)
331 1s79_A Lupus LA protein; RRM, 98.1 3.2E-06 1.1E-10 75.2 6.5 66 336-402 8-76 (103)
332 1x5p_A Negative elongation fac 98.1 3.5E-06 1.2E-10 72.6 6.2 63 337-403 13-75 (97)
333 2m2b_A RNA-binding protein 10; 98.1 2.9E-06 1E-10 77.3 6.0 63 337-400 21-89 (131)
334 2ki2_A SS-DNA binding protein 98.1 1.7E-06 5.8E-11 73.1 4.1 63 340-403 2-68 (90)
335 2a3j_A U1 small nuclear ribonu 98.1 3.8E-06 1.3E-10 78.0 6.4 67 337-403 27-98 (127)
336 2wbr_A GW182, gawky, LD47780P; 98.1 4.5E-06 1.5E-10 74.8 6.5 64 337-402 5-68 (89)
337 2db1_A Heterogeneous nuclear r 98.1 4.5E-06 1.5E-10 75.3 6.6 67 335-402 13-85 (118)
338 3tht_A Alkylated DNA repair pr 98.1 3.5E-06 1.2E-10 90.7 6.6 65 336-402 15-81 (345)
339 2mss_A Protein (musashi1); RNA 98.1 3.7E-06 1.3E-10 68.8 5.0 62 341-403 1-66 (75)
340 3n9u_C Cleavage and polyadenyl 98.1 3.9E-06 1.3E-10 80.0 5.9 66 338-403 54-125 (156)
341 2xs2_A Deleted in azoospermia- 98.0 1.8E-06 6.2E-11 74.7 3.2 66 337-402 7-78 (102)
342 2dgw_A Probable RNA-binding pr 98.0 6E-06 2.1E-10 70.0 6.1 66 336-403 7-75 (91)
343 1wel_A RNA-binding protein 12; 98.0 4.6E-06 1.6E-10 75.2 5.5 66 337-403 23-92 (124)
344 2lmi_A GRSF-1, G-rich sequence 98.0 7.6E-06 2.6E-10 72.2 6.7 66 336-402 8-79 (107)
345 1sjr_A Polypyrimidine tract-bi 98.0 5.9E-06 2E-10 80.9 6.6 66 338-403 45-110 (164)
346 2f3j_A RNA and export factor b 98.0 7.6E-06 2.6E-10 79.3 7.2 68 336-403 85-155 (177)
347 2jwn_A Embryonic polyadenylate 98.0 2.8E-06 9.5E-11 76.0 3.7 66 337-403 34-103 (124)
348 1x4b_A Heterogeneous nuclear r 98.0 4.4E-06 1.5E-10 74.0 4.9 65 337-402 25-93 (116)
349 2hgn_A Heterogeneous nuclear r 98.0 2.8E-06 9.7E-11 80.2 3.9 103 290-402 1-110 (139)
350 3d2w_A TAR DNA-binding protein 98.0 5.5E-06 1.9E-10 71.4 5.3 58 334-392 6-63 (89)
351 1wf0_A TDP-43, TAR DNA-binding 98.0 4.5E-06 1.6E-10 70.5 4.4 56 337-393 3-58 (88)
352 2rs2_A Musashi-1, RNA-binding 98.0 5.5E-06 1.9E-10 73.6 5.0 62 337-398 23-88 (109)
353 2bz2_A Negative elongation fac 98.0 1.1E-05 3.9E-10 73.5 7.1 63 337-403 37-99 (121)
354 2dnr_A Synaptojanin-1; RRM dom 98.0 1E-05 3.5E-10 72.9 6.5 69 252-323 5-85 (91)
355 2cpy_A RNA-binding protein 12; 98.0 6.3E-06 2.2E-10 73.5 5.1 65 337-402 13-81 (114)
356 2lcw_A RNA-binding protein FUS 97.2 1.1E-06 3.9E-11 78.0 0.0 67 337-403 5-83 (116)
357 3zzy_A Polypyrimidine tract-bi 97.9 1.2E-05 4E-10 76.0 6.3 70 333-403 20-92 (130)
358 1wg5_A Heterogeneous nuclear r 97.9 1.5E-05 5.1E-10 70.0 6.2 65 337-402 13-81 (104)
359 2e5i_A Heterogeneous nuclear r 97.9 1.5E-05 5.1E-10 74.3 6.6 64 338-403 22-88 (124)
360 1iqt_A AUF1, heterogeneous nuc 97.9 1.2E-05 4E-10 65.6 4.6 61 341-402 1-65 (75)
361 1wez_A HnRNP H', FTP-3, hetero 97.9 1.9E-05 6.5E-10 69.8 6.3 64 335-402 11-79 (102)
362 3q2s_C Cleavage and polyadenyl 97.9 9.5E-06 3.3E-10 81.6 4.8 65 338-402 67-137 (229)
363 2dit_A HIV TAT specific factor 97.8 4.5E-05 1.5E-09 67.9 7.9 67 337-403 13-90 (112)
364 1ufw_A Synaptojanin 2; RNP dom 97.8 1.7E-05 5.7E-10 72.1 5.1 67 247-316 8-83 (95)
365 2pe8_A Splicing factor 45; RRM 97.7 5.4E-05 1.8E-09 67.9 7.1 68 336-403 5-82 (105)
366 2diu_A KIAA0430 protein; struc 97.7 6.3E-05 2.1E-09 68.4 6.4 63 337-402 6-71 (96)
367 2dha_A FLJ20171 protein; RRM d 97.6 4.8E-05 1.6E-09 70.3 5.1 65 337-402 21-92 (123)
368 2hgm_A HNRPF protein, heteroge 97.5 9.8E-05 3.3E-09 68.8 5.9 64 337-402 40-108 (126)
369 2dnn_A RNA-binding protein 12; 97.5 0.00013 4.4E-09 65.9 6.3 61 338-402 15-80 (109)
370 2voo_A Lupus LA protein; RNA-b 97.4 9.9E-05 3.4E-09 72.3 4.7 61 338-398 108-171 (193)
371 3s6e_A RNA-binding protein 39; 97.1 0.00069 2.3E-08 62.1 6.7 70 334-403 2-81 (114)
372 3v4m_A Splicing factor U2AF 65 97.1 0.00084 2.9E-08 60.1 6.5 67 337-403 3-85 (105)
373 3ue2_A Poly(U)-binding-splicin 96.9 0.0013 4.3E-08 60.6 6.2 66 337-402 18-96 (118)
374 1wey_A Calcipressin 1; structu 96.8 0.002 6.7E-08 59.5 6.6 70 254-323 5-83 (104)
375 1owx_A Lupus LA protein, SS-B, 96.7 0.0028 9.5E-08 59.4 7.0 60 336-398 15-77 (121)
376 1jmt_A Splicing factor U2AF 35 96.3 0.0029 9.8E-08 56.4 4.4 60 344-403 20-94 (104)
377 1uw4_A UPF3X; nonsense mediate 96.2 0.014 4.8E-07 52.4 8.1 60 255-314 2-69 (91)
378 2d9o_A DNAJ (HSP40) homolog, s 96.0 0.0052 1.8E-07 55.0 4.4 51 349-400 27-77 (100)
379 2l9w_A U4/U6 snRNA-associated- 95.6 0.023 7.8E-07 53.4 7.0 61 254-314 21-86 (117)
380 2j8a_A Histone-lysine N-methyl 94.7 0.026 8.8E-07 54.3 4.6 64 340-403 3-84 (136)
381 3pq1_A Poly(A) RNA polymerase; 94.2 0.024 8.2E-07 63.6 3.7 57 249-306 48-105 (464)
382 1wwh_A Nucleoporin 35, nucleop 93.4 0.13 4.5E-06 48.4 6.5 73 240-314 10-82 (119)
383 2l08_A Regulator of nonsense t 92.8 0.13 4.3E-06 47.0 5.3 61 254-314 9-77 (97)
384 3dxb_A Thioredoxin N-terminall 92.5 0.087 3E-06 51.5 4.2 52 351-402 141-200 (222)
385 1whv_A Poly(A)-specific ribonu 91.5 0.56 1.9E-05 43.2 7.9 65 253-319 14-78 (100)
386 2dhx_A Poly (ADP-ribose) polym 91.3 0.5 1.7E-05 43.8 7.3 63 252-316 6-77 (104)
387 2dnr_A Synaptojanin-1; RRM dom 89.8 0.39 1.3E-05 43.3 5.2 57 341-403 9-74 (91)
388 1whv_A Poly(A)-specific ribonu 89.5 0.99 3.4E-05 41.6 7.7 53 340-398 17-70 (100)
389 3ctr_A Poly(A)-specific ribonu 88.8 0.3 1E-05 45.0 3.7 57 257-316 9-65 (101)
390 1ufw_A Synaptojanin 2; RNP dom 87.1 0.6 2E-05 42.5 4.6 63 338-403 14-83 (95)
391 3iot_A Maltose-binding protein 83.6 0.2 6.9E-06 53.4 -0.3 10 52-61 20-29 (449)
392 3d45_A Poly(A)-specific ribonu 83.5 1.9 6.3E-05 48.7 7.4 62 254-318 440-501 (507)
393 1ow1_A Smart/HDAC1 associated 83.4 0.22 7.4E-06 50.5 -0.1 127 691-820 34-172 (195)
394 3ctr_A Poly(A)-specific ribonu 80.6 1.4 4.9E-05 40.5 4.2 54 341-398 7-60 (101)
395 2l9w_A U4/U6 snRNA-associated- 77.6 4.8 0.00016 38.0 6.7 65 339-403 21-88 (117)
396 1wey_A Calcipressin 1; structu 69.8 12 0.00041 34.6 7.3 68 340-410 6-83 (104)
397 3d45_A Poly(A)-specific ribonu 42.8 38 0.0013 38.1 7.0 56 339-399 440-495 (507)
398 3p3d_A Nucleoporin 53; structu 37.5 16 0.00053 35.1 2.4 46 264-309 16-81 (132)
399 1wwh_A Nucleoporin 35, nucleop 34.0 66 0.0023 30.3 6.0 60 339-402 24-83 (119)
400 1uw4_A UPF3X; nonsense mediate 34.0 55 0.0019 29.2 5.2 59 341-401 3-69 (91)
401 3pq1_A Poly(A) RNA polymerase; 31.6 24 0.00082 39.8 3.0 55 337-394 51-106 (464)
402 2dhx_A Poly (ADP-ribose) polym 27.9 96 0.0033 28.7 5.8 57 339-396 8-66 (104)
403 4bby_A Alkyldihydroxyacetoneph 27.1 30 0.001 39.9 2.9 77 247-323 335-423 (658)
404 1nxk_A MAP kinase-activated pr 21.3 19 0.00065 38.0 -0.2 7 700-706 69-75 (400)
No 1
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.90 E-value=2.6e-23 Score=191.18 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=118.8
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe--------cCCceEEEEecChHHHHHHHHHhcCCcce-------
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF--------PIKGFALVEYINIIDAIRAREYIRNHFSW------- 316 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~--------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~------- 316 (842)
+.+++||||||+.++||++|+++|++||+|.++++. ++||||||+|.+.+||.+|++.|+|..+.
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 457899999999999999999999999999999986 56899999999999999999999997653
Q ss_pred EEEEeccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC---CCceeeEEecChhhHHHH
Q 003170 317 RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS---CEGALLMEFRTPEEATTA 393 (842)
Q Consensus 317 RIrF~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~---~r~~afVEF~s~edAa~A 393 (842)
++.+.+.... ....++.|||+|++..++.++|.+.|.++|.+..+.+..-. ++++|||+|.+.++|..|
T Consensus 81 ~~~~~~~~~~--------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 81 QMKPADSEKN--------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp EEEECGGGCC--------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHH
T ss_pred EEcccccccc--------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHH
Confidence 5555544311 12468899999999999999999999998766543332211 145799999999999999
Q ss_pred HHHhhhccc
Q 003170 394 MAHLRQHRK 402 (842)
Q Consensus 394 m~~lrg~R~ 402 (842)
+..|+|+.+
T Consensus 153 ~~~l~g~~~ 161 (175)
T 3nmr_A 153 IKAMHQAQT 161 (175)
T ss_dssp HHHHTTSCC
T ss_pred HHHhcCCcc
Confidence 999998875
No 2
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.90 E-value=4.2e-23 Score=187.91 Aligned_cols=142 Identities=17% Similarity=0.185 Sum_probs=119.6
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCC------ceEEEEecChHHHHHHHHHhcCCcce----EEEEec
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK------GFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 322 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~R------GFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r 322 (842)
.+++||||||+.+++|+||++.|++||+|.++.+.+.+ |||||+|.+.+||.+|++.|+|..+. +|++++
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999997644 99999999999999999999998775 677776
Q ss_pred cccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC----CCceeeEEecChhhHHHHHHHhh
Q 003170 323 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS----CEGALLMEFRTPEEATTAMAHLR 398 (842)
Q Consensus 323 ~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~----~r~~afVEF~s~edAa~Am~~lr 398 (842)
+... ....+.|||+|++..++.++|.+.|.++|.+..+.+..-. ++++|||+|.+.++|..|+..|+
T Consensus 81 ~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 81 PSSA---------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp CCCG---------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCcc---------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 5311 2467899999999999999999999998655443332111 24679999999999999999999
Q ss_pred hcccC
Q 003170 399 QHRKS 403 (842)
Q Consensus 399 g~R~e 403 (842)
|+..+
T Consensus 152 g~~~~ 156 (167)
T 1fxl_A 152 GQKPS 156 (167)
T ss_dssp TCCCT
T ss_pred CCccC
Confidence 98763
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1e-22 Score=185.23 Aligned_cols=142 Identities=15% Similarity=0.195 Sum_probs=119.0
Q ss_pred CeEEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce----EEEEecccc
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 325 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~l 325 (842)
|+||||||+.++|++||++.|++||+|.+|++.+ ++|||||+|.+.+||.+|++.|+|..+. +|+++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 6899999999999999999999999999999953 6799999999999999999999999775 777765531
Q ss_pred CCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcc
Q 003170 326 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 326 Gsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R 401 (842)
. ....+++.|||+|++..++.++|.+.|.++|.+..+.+..- .++++|||+|.+.++|..|+..|+++.
T Consensus 81 ~-------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 81 Q-------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp C-------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred C-------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 1 12357889999999999999999999999766554333211 124579999999999999999999887
Q ss_pred cC
Q 003170 402 KS 403 (842)
Q Consensus 402 ~e 403 (842)
.+
T Consensus 154 ~~ 155 (166)
T 3md3_A 154 LN 155 (166)
T ss_dssp ET
T ss_pred cC
Confidence 64
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.89 E-value=1.1e-22 Score=186.38 Aligned_cols=142 Identities=16% Similarity=0.204 Sum_probs=120.1
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEec
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 322 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r 322 (842)
++++||||||+.+++++||++.|++||+|.++++.+ +||||||+|.+.+||.+|++.|+|..+. +|+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 679999999999999999999999999999999864 5699999999999999999999999775 777776
Q ss_pred cccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC----CCceeeEEecChhhHHHHHHHhh
Q 003170 323 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS----CEGALLMEFRTPEEATTAMAHLR 398 (842)
Q Consensus 323 ~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~----~r~~afVEF~s~edAa~Am~~lr 398 (842)
.... ...++.|||+|++..++.|+|.+.|.++|.+..+.+..-. ++++|||+|.+.++|..|+..|+
T Consensus 82 ~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 152 (168)
T 1b7f_A 82 PGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 152 (168)
T ss_dssp CCSS---------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCcc---------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 5411 2568899999999999999999999997765443332211 13579999999999999999999
Q ss_pred hcccC
Q 003170 399 QHRKS 403 (842)
Q Consensus 399 g~R~e 403 (842)
++..+
T Consensus 153 g~~~~ 157 (168)
T 1b7f_A 153 NVIPE 157 (168)
T ss_dssp TCCCT
T ss_pred CCEec
Confidence 98763
No 5
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.88 E-value=5.3e-22 Score=195.52 Aligned_cols=152 Identities=17% Similarity=0.140 Sum_probs=123.1
Q ss_pred CCCCeEEecCCC-CccCHHHHHHhccccCCcceEEEec-CCceEEEEecChHHHHHHHHHhcCCcce----EEEEecccc
Q 003170 252 SASKQLWLGSFG-PEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 325 (842)
Q Consensus 252 s~Sr~LwVGnL~-~dvtE~dL~~~F~rfGpIesV~~~~-~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~l 325 (842)
.++++||||||+ .++++++|+++|++||.|.+|++.+ .||||||+|.+.+||.+|++.|||+.+. +|+|++..-
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 467899999999 7999999999999999999999987 5899999999999999999999999876 778775210
Q ss_pred CC--------------ccc----cccc----------cccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCC-
Q 003170 326 GT--------------KGV----INGV----------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC- 376 (842)
Q Consensus 326 Gs--------------rg~----~~Gv----------a~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~- 376 (842)
.. +.. .+.. ...++++|||+|++..++.|+|.+.|..+|.+-...++.+.+
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 00 000 0000 014678999999999999999999999987663334554544
Q ss_pred ---CceeeEEecChhhHHHHHHHhhhcccC
Q 003170 377 ---EGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 377 ---r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
++++||||++.|+|..|+..|+++.++
T Consensus 162 ~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~ 191 (205)
T 3tyt_A 162 SERSSSGLLEWDSKSDALETLGFLNHYQMK 191 (205)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHTTCEEC
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCCcc
Confidence 367999999999999999999999864
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.88 E-value=1.7e-22 Score=196.87 Aligned_cols=145 Identities=16% Similarity=0.190 Sum_probs=117.6
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
.++++||||||+.++||++|+++|++||+|++|++.+ ++|||||+|.+.+||.+|++.|+|..+. ++.+.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4678999999999999999999999999999999853 6799999999999999999999998764 55544
Q ss_pred ccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec--CCCceeeEEecChhhHHHHHHHhhh
Q 003170 322 DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL--SCEGALLMEFRTPEEATTAMAHLRQ 399 (842)
Q Consensus 322 r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl--~~r~~afVEF~s~edAa~Am~~lrg 399 (842)
..... ......+.|||||++..++.++|.+.|.++|.+-.+.+..- .+++++||+|.+.|+|..|++.|+|
T Consensus 93 ~~~~~-------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 93 QRDPS-------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp CCCTH-------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ccccc-------ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 33200 11235678999999999999999999999876654433211 1356799999999999999999998
Q ss_pred cccC
Q 003170 400 HRKS 403 (842)
Q Consensus 400 ~R~e 403 (842)
+.++
T Consensus 166 ~~~~ 169 (213)
T 4f02_A 166 MLLN 169 (213)
T ss_dssp CEET
T ss_pred CEEC
Confidence 8764
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.87 E-value=3.4e-22 Score=190.51 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=119.2
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
...+++||||||+.++||+||+++|++||+|.+|++.+ .+|||||+|.+.+||.+|++.|+|..+. +|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 34578999999999999999999999999999999853 6899999999999999999999999876 4443
Q ss_pred eccccCCccccc--cccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHH
Q 003170 321 MDVGLGTKGVIN--GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAM 394 (842)
Q Consensus 321 ~r~~lGsrg~~~--Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am 394 (842)
............ ......+++|||+|++..++.|||.+.|.++|.+-.+.+..- .++++|||+|.+.++|..|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp CSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHH
Confidence 322100000000 001245789999999999999999999999765544333221 12567999999999999999
Q ss_pred HHhhhcccC
Q 003170 395 AHLRQHRKS 403 (842)
Q Consensus 395 ~~lrg~R~e 403 (842)
+.|+++.++
T Consensus 185 ~~l~g~~~~ 193 (216)
T 2qfj_A 185 SSMNLFDLG 193 (216)
T ss_dssp HHHTTCBCS
T ss_pred HHccCCEeC
Confidence 999998864
No 8
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.87 E-value=9.7e-22 Score=184.97 Aligned_cols=151 Identities=16% Similarity=0.200 Sum_probs=119.3
Q ss_pred CCCCeEEecCCCCccCHHHHHHhcccc----C-------CcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRF----G-------PLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW---- 316 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rf----G-------pIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~---- 316 (842)
..+++||||||+.++||+||++.|++| | +|.++.+.++||||||+|.+.+||.+|+ .|+|..+.
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 358999999999999999999999999 6 8888999999999999999999999999 89999776
Q ss_pred EEEEeccccCCc-----------cccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC----CCceee
Q 003170 317 RVKFMDVGLGTK-----------GVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS----CEGALL 381 (842)
Q Consensus 317 RIrF~r~~lGsr-----------g~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~----~r~~af 381 (842)
+|++........ +.........++.|||||++..++.++|.+.|.++|.+-.+.+..-. ++++||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 555543321111 01112222578999999999999999999999998765443332111 156799
Q ss_pred EEecChhhHHHHHHHhhhcccC
Q 003170 382 MEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 382 VEF~s~edAa~Am~~lrg~R~e 403 (842)
|+|.+.++|..|++.|+++.++
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~ 182 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLG 182 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEET
T ss_pred EEECCHHHHHHHHHHcCCCEEC
Confidence 9999999999999999998764
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.87 E-value=8.8e-22 Score=181.45 Aligned_cols=142 Identities=14% Similarity=0.186 Sum_probs=117.8
Q ss_pred CCCCeEEecCCCCccCHHHHHHhcccc----C-------CcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRF----G-------PLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW---- 316 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rf----G-------pIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~---- 316 (842)
.++++||||||+.++||+||++.|++| | +|.++.+.++||||||+|.+.+||.+|+ .|+|..+.
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 357999999999999999999999999 7 8999999999999999999999999999 99999876
Q ss_pred EEEEeccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC----CCceeeEEecChhhHHH
Q 003170 317 RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS----CEGALLMEFRTPEEATT 392 (842)
Q Consensus 317 RIrF~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~----~r~~afVEF~s~edAa~ 392 (842)
+|++.... .....++.|||||++..++.++|.+.|.++|.+..+.+..-. ++++|||+|.+.++|..
T Consensus 81 ~v~~~~~~---------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 81 KIRRPHDY---------QPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp EEECCSSC---------CCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHH
T ss_pred eecCCccc---------CCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 44443322 112457899999999999999999999998765443332211 14579999999999999
Q ss_pred HHHHhhhcccC
Q 003170 393 AMAHLRQHRKS 403 (842)
Q Consensus 393 Am~~lrg~R~e 403 (842)
|+..|+++..+
T Consensus 152 A~~~l~g~~~~ 162 (172)
T 2g4b_A 152 AIAGLNGMQLG 162 (172)
T ss_dssp HHHHHTTCEET
T ss_pred HHHHcCCCEEC
Confidence 99999987753
No 10
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.87 E-value=1.7e-21 Score=194.90 Aligned_cols=152 Identities=12% Similarity=0.196 Sum_probs=123.1
Q ss_pred cCCCCCeEEecCCCCccCHHHHH----HhccccCCcceEEEec---CCceEEEEecChHHHHHHHHHhcCCcce----EE
Q 003170 250 IFSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RV 318 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~----~~F~rfGpIesV~~~~---~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RI 318 (842)
-..++++||||||+.++|++||+ ++|++||.|.+|++.+ .||||||+|.+.+||.+|++.|+|..+. +|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 35679999999999999999977 8999999999999764 8899999999999999999999998776 77
Q ss_pred EEeccccCCc----c------------------------------------cccc-------------------------
Q 003170 319 KFMDVGLGTK----G------------------------------------VING------------------------- 333 (842)
Q Consensus 319 rF~r~~lGsr----g------------------------------------~~~G------------------------- 333 (842)
+|++...... | ...|
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 7775421100 0 0000
Q ss_pred -------------------------------------ccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCC
Q 003170 334 -------------------------------------VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC 376 (842)
Q Consensus 334 -------------------------------------va~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~ 376 (842)
....++++|||||++..+++|+|.+.|.++|.+.. ++.+.+
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~--v~~~~~ 242 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKE--VRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEE--EEEecC
Confidence 01136789999999999999999999999765554 344455
Q ss_pred C-ceeeEEecChhhHHHHHHHhhhcccC
Q 003170 377 E-GALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 377 r-~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
+ +++||+|.+.++|..|+..|+++.++
T Consensus 243 ~~g~afV~f~~~~~A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 243 RHDIAFVEFDNEVQAGAARDALQGFKIT 270 (282)
T ss_pred CCcEEEEEeCCHHHHHHHHHHcCCcEeC
Confidence 5 68999999999999999999998764
No 11
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.86 E-value=2.8e-21 Score=190.34 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=122.5
Q ss_pred CCCCCeEEecCCCC-ccCHHHHHHhccccCCcceEEEecC-CceEEEEecChHHHHHHHHHhcCCcce----EEEEeccc
Q 003170 251 FSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPI-KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 324 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~-dvtE~dL~~~F~rfGpIesV~~~~~-RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~ 324 (842)
..++++||||||+. ++++++|+++|++||+|.+|.+.+. ||||||+|.+.++|.+|++.|+|..+. +|++++..
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 35689999999999 9999999999999999999999875 699999999999999999999999775 77777542
Q ss_pred c------CCc--------------cc--ccc----ccccccceEEEccCCCchhHHHHHHHHhhcc-ccCCceeeecC-C
Q 003170 325 L------GTK--------------GV--ING----VAVGSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTDLS-C 376 (842)
Q Consensus 325 l------Gsr--------------g~--~~G----va~~~s~~LwVG~Iss~~~kEEi~~E~~k~g-~~g~~~~~dl~-~ 376 (842)
. +.. +. ... ....++++|||+|++..+++|+|.+.|.++| .+.. ++.+. +
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~--v~i~~~~ 188 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG--FKFFQKD 188 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEE--EEECSSS
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeE--EEEEECC
Confidence 0 000 00 000 0124589999999999999999999999986 3333 33323 6
Q ss_pred CceeeEEecChhhHHHHHHHhhhcccC
Q 003170 377 EGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 377 r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
++++||+|.+.++|..|+..|+++...
T Consensus 189 ~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 189 RKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 889999999999999999999998764
No 12
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.86 E-value=9.7e-22 Score=197.66 Aligned_cols=191 Identities=13% Similarity=0.128 Sum_probs=135.6
Q ss_pred ccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec----CCceEEEEecChHHHHHHHHHhcCCcce--EEEE
Q 003170 247 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKF 320 (842)
Q Consensus 247 ~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~----~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RIrF 320 (842)
+..-...+++||||||+.++|+++|+++|++||+|.+|++.+ .+|||||+|.+.+||.+|++ |+|..+. .|+.
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v 112 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIV 112 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEE
Confidence 344456789999999999999999999999999999999977 68999999999999999995 9998765 2222
Q ss_pred eccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhcc-ccCCceeeec---CCCceeeEEecChhhHHHHHHH
Q 003170 321 MDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTDL---SCEGALLMEFRTPEEATTAMAH 396 (842)
Q Consensus 321 ~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g-~~g~~~~~dl---~~r~~afVEF~s~edAa~Am~~ 396 (842)
.. ..+++|||||++..++.++|.+.|.++| .+-.+.+..- .++++|||+|.+.++|..|+..
T Consensus 113 ~~--------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~ 178 (292)
T 2ghp_A 113 SH--------------LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 178 (292)
T ss_dssp EE--------------CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHH
T ss_pred EE--------------CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 21 2467999999999999999999999987 4443332211 2567899999999999999999
Q ss_pred hhhcccCCC----CCCCCCCCCCCCcccccCCCCCCCCCcEEEe-ccCc-c---cccccccCCCCceeecc
Q 003170 397 LRQHRKSRS----NYLPPNTGPANAAMSQIDGARSVPAAPIHVD-IRSN-R---LGNISAGGFGSPHTAPF 458 (842)
Q Consensus 397 lrg~R~erS----sf~~r~ss~~~~Pmr~eD~~~svPSnVLwig-~p~~-~---~~n~a~~~fGei~r~k~ 458 (842)
|+++.+++. .|.... ....+. .....++.+|+|+ +|.+ . -+.-.|..||+|..+++
T Consensus 179 l~g~~~~g~~l~v~~a~~~----~~~~~~--~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i 243 (292)
T 2ghp_A 179 LNGLKIEGYTLVTKVSNPL----EKSKRT--DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINI 243 (292)
T ss_dssp HTTCEETTEECEEEECCCC---------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEEC
T ss_pred hCCCEeCCcEEEEEECCCC----cccccc--cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEE
Confidence 999887421 121100 000000 0112566777764 6654 2 34448899999988775
No 13
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.86 E-value=3.2e-21 Score=183.25 Aligned_cols=149 Identities=16% Similarity=0.174 Sum_probs=121.0
Q ss_pred CCCeEEecCCCC-ccCHHHHHHhccccCCcceEEEecC-CceEEEEecChHHHHHHHHHhcCCcce----EEEEecccc-
Q 003170 253 ASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPI-KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL- 325 (842)
Q Consensus 253 ~Sr~LwVGnL~~-dvtE~dL~~~F~rfGpIesV~~~~~-RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~l- 325 (842)
.+++||||||+. ++++++|++.|++||+|.+|.+.+. ||||||+|.+.++|.+|++.|+|..+. +|++++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 368999999999 9999999999999999999999775 699999999999999999999998775 888876421
Q ss_pred -----CCc--cc--------c-----cc-----ccccccceEEEccCCCchhHHHHHHHHhhcc-ccCCceeeecC-CCc
Q 003170 326 -----GTK--GV--------I-----NG-----VAVGSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTDLS-CEG 378 (842)
Q Consensus 326 -----Gsr--g~--------~-----~G-----va~~~s~~LwVG~Iss~~~kEEi~~E~~k~g-~~g~~~~~dl~-~r~ 378 (842)
+.. +. . .+ ....++++|||+|++..++.|+|.+.|.++| .+.. +..+. .++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~--v~i~~~~~g 159 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG--FKFFQKDRK 159 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCE--EEESSTTSS
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceE--EEEEeCCCc
Confidence 000 00 0 00 0014589999999999999999999999986 3333 33333 578
Q ss_pred eeeEEecChhhHHHHHHHhhhcccC
Q 003170 379 ALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 379 ~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
++||+|.+.++|..|+..|+++.+.
T Consensus 160 ~afV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 160 MALIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp CEEEECSSHHHHHHHHHHHTSSCCS
T ss_pred EEEEEeCCHHHHHHHHHHhcCCccC
Confidence 8999999999999999999998764
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.86 E-value=7.7e-22 Score=197.64 Aligned_cols=180 Identities=18% Similarity=0.200 Sum_probs=146.0
Q ss_pred CCCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcce
Q 003170 204 NHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH 283 (842)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIes 283 (842)
-.|+.|++.|.|..++..+|+.. ++|.++-.......++||||||+.++|+++|++.|++||.|.+
T Consensus 59 ~afV~f~~~~~A~~A~~~l~~~~--------------~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~ 124 (284)
T 3smz_A 59 TAFVTLLNGEQAEAAINAFHQSR--------------LRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLER 124 (284)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCE--------------ETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred EEEEEeCCHHHHHHHHHHcCCCe--------------eCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeE
Confidence 46999999999999998776543 1444455555678899999999999999999999999999999
Q ss_pred EEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEeccccCCccccccccccccceEEEccCCCch-h
Q 003170 284 FFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQW-A 352 (842)
Q Consensus 284 V~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~-~ 352 (842)
+.+.. ++|||||+|.+.+||.+|++.|+|..+. +|++++..-. ......++.|||+|++..+ +
T Consensus 125 ~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~------~~~~~~~~~l~v~nlp~~~~~ 198 (284)
T 3smz_A 125 CFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL------TPALLHSRCLCVDRLPPGFND 198 (284)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC------CTTTTSCSEEEEECCCTTCCC
T ss_pred EEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC------CcccCCccEEEEecCCcccCC
Confidence 98753 5799999999999999999999998775 7777765411 1123568899999999995 8
Q ss_pred HHHHHHHHhhccccCCceeeec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 353 KDEILHESYKVVYKGPYMVTDL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 353 kEEi~~E~~k~g~~g~~~~~dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.|+|.+.|.++|.+-.+.+..- .+++++||+|.+.++|..|+..|+|+..+
T Consensus 199 ~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 199 VDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp HHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred HHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 8999999999876544333221 12567999999999999999999998864
No 15
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.85 E-value=7.8e-21 Score=190.36 Aligned_cols=182 Identities=12% Similarity=0.093 Sum_probs=140.0
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEeccccC
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLG 326 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~lG 326 (842)
..++++||||||+.++|++||+++|++|| |.++.+.+.+|||||+|.+.+||.+|++.|+|..+. +|++.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~----- 92 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ----- 92 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC-----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec-----
Confidence 34689999999999999999999999999 999999999999999999999999999999999765 44432
Q ss_pred CccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC----CCceeeEEecChhhHHHHHHHhhhccc
Q 003170 327 TKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS----CEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 327 srg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~----~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
...++|||||++..++.|+|.+.|.++|.+..+.+..-. +++++||+|.+.++|..|+..|+++.+
T Consensus 93 ----------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~ 162 (284)
T 3smz_A 93 ----------PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL 162 (284)
T ss_dssp ----------CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred ----------CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 345799999999999999999999998765543332111 245799999999999999999999876
Q ss_pred C----CCCCCCCCCCCCCCcccccCCCCCCCCCcEEE-eccCc----ccccccccCCCCceeecc
Q 003170 403 S----RSNYLPPNTGPANAAMSQIDGARSVPAAPIHV-DIRSN----RLGNISAGGFGSPHTAPF 458 (842)
Q Consensus 403 e----rSsf~~r~ss~~~~Pmr~eD~~~svPSnVLwi-g~p~~----~~~n~a~~~fGei~r~k~ 458 (842)
+ +..|... ........++.+|+| ++|.+ .-+.-.|..||.|..+++
T Consensus 163 ~g~~i~v~~a~~----------~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i 217 (284)
T 3smz_A 163 GPRTLYVHWTDA----------GQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQL 217 (284)
T ss_dssp TTEECEEEECCG----------GGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEE
T ss_pred CCcEEEEEECCC----------CCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEE
Confidence 4 1112210 001111256666775 56643 224448899999977664
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.85 E-value=4.3e-21 Score=192.75 Aligned_cols=137 Identities=15% Similarity=0.195 Sum_probs=117.2
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEecccc
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 325 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~l 325 (842)
-...+++||||||+.++|+++|++.|++||+|.+|.+.++||||||+|.+.+||.+|++.|+|..+. +|+++.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~--- 94 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT--- 94 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC---
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc---
Confidence 3567789999999999999999999999999999999999999999999999999999999999765 555544
Q ss_pred CCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC---CCceeeEEecChhhHHHHHHHhhhcc
Q 003170 326 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS---CEGALLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 326 Gsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~---~r~~afVEF~s~edAa~Am~~lrg~R 401 (842)
+++.|||||++..++.++|.+.|.++|.+-.+.+..-. ++++|||+|.+.++|..|+..|++..
T Consensus 95 ------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~ 161 (261)
T 3sde_A 95 ------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGA 161 (261)
T ss_dssp ------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSC
T ss_pred ------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCe
Confidence 35689999999999999999999998765443332111 25679999999999999999996543
No 17
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.85 E-value=3.4e-21 Score=181.03 Aligned_cols=148 Identities=14% Similarity=0.173 Sum_probs=112.5
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEE
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 319 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIr 319 (842)
-...+++||||||+.++||+||+++|++||+|.+|++.+ +||||||+|.+.+||.+|++. +|..+. +|+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 345789999999999999999999999999999999864 579999999999999999987 666554 566
Q ss_pred EeccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHH
Q 003170 320 FMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMA 395 (842)
Q Consensus 320 F~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~ 395 (842)
++....... ..-....++.|||+|++..++.|+|.+.|.++|.+..+.+..- .++++|||+|.+.++|..|+.
T Consensus 88 ~~~~~~~~~---~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 88 RAVSREDSQ---RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp ECCC--------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred cccCccccc---ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 554321110 0111245789999999999999999999999866554433221 124579999999999999997
Q ss_pred Hhhhccc
Q 003170 396 HLRQHRK 402 (842)
Q Consensus 396 ~lrg~R~ 402 (842)
. +++..
T Consensus 165 ~-~~~~~ 170 (196)
T 1l3k_A 165 Q-KYHTV 170 (196)
T ss_dssp C-SCCEE
T ss_pred h-CCcEE
Confidence 5 44443
No 18
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.85 E-value=3.2e-21 Score=179.02 Aligned_cols=142 Identities=14% Similarity=0.171 Sum_probs=115.4
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcce-----EEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH-----FFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIes-----V~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
...+++||||||+.++|++||++.|.+||.+.. .....+||||||+|.+.+||.+|++ |+|..+. +|+++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 356899999999999999999999999996554 4445699999999999999999995 9999776 55555
Q ss_pred ccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceee--ecCCCceeeEEecChhhHHHHHHHhhh
Q 003170 322 DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT--DLSCEGALLMEFRTPEEATTAMAHLRQ 399 (842)
Q Consensus 322 r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~--dl~~r~~afVEF~s~edAa~Am~~lrg 399 (842)
...- ......++.|||+|++..++.++|.+.|.++| .+.+. .-.++++|||+|.+.++|..|+..|+|
T Consensus 89 ~~~~-------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g---~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 1fje_B 89 KGRD-------SKKVRAARTLLAKNLSFNITEDELKEVFEDAL---EIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG 158 (175)
T ss_dssp CCSS-------CSTTGGGGEEEEESCCSSCCHHHHHHHCTTCS---EEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred CCcc-------ccccccCCEEEEeCCCCCCCHHHHHHHHHhcC---eEEEecCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 4321 11235789999999999999999999999864 43332 124567899999999999999999998
Q ss_pred cccC
Q 003170 400 HRKS 403 (842)
Q Consensus 400 ~R~e 403 (842)
+.++
T Consensus 159 ~~~~ 162 (175)
T 1fje_B 159 AEID 162 (175)
T ss_dssp EEET
T ss_pred CEEC
Confidence 8764
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.84 E-value=3.1e-21 Score=194.03 Aligned_cols=182 Identities=13% Similarity=0.092 Sum_probs=139.2
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccC-Cc
Q 003170 203 RNHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFG-PL 281 (842)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfG-pI 281 (842)
.-.|+.|.+.|.|..++. +|+.. .-|.. +... ...+++||||||+.++++++|+++|++|| +|
T Consensus 82 g~afV~f~~~~~A~~A~~-~~~~~---~~g~~-----------i~v~-~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i 145 (292)
T 2ghp_A 82 RFARIEFARYDGALAAIT-KTHKV---VGQNE-----------IIVS-HLTECTLWMTNFPPSYTQRNIRDLLQDINVVA 145 (292)
T ss_dssp EEEEEEESSHHHHHHHHT-TTTCE---ETTEE-----------CEEE-ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCC
T ss_pred EEEEEEECCHHHHHHHHH-hCCcE---eCCcE-----------EEEE-ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCe
Confidence 456999999999999995 66532 12322 2221 13689999999999999999999999999 99
Q ss_pred ceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce----EEEEeccccCCccccccccccccceEEEccCCCc-h
Q 003170 282 EHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQ-W 351 (842)
Q Consensus 282 esV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~-~ 351 (842)
.+|.+.+ ++|||||+|.+.++|.+|++.|+|..+. +|+++.+....... ......++.|||+|++.. +
T Consensus 146 ~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~--~~~~~~~~~l~v~nlp~~~~ 223 (292)
T 2ghp_A 146 LSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT--DSATLEGREIMIRNLSTELL 223 (292)
T ss_dssp CEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-----------CCTTTEEEEEEECTTTC
T ss_pred EEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc--cccCCCCceEEEECCCcccC
Confidence 9999864 7899999999999999999999999875 77777654211100 012356899999999999 9
Q ss_pred hHHHHHHHHhhccccCCceeee-----cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 352 AKDEILHESYKVVYKGPYMVTD-----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 352 ~kEEi~~E~~k~g~~g~~~~~d-----l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
+.|+|.+.|.++|.+-.+.+.. =.++++|||+|.+.++|..|+ .|+|+.++
T Consensus 224 t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~ 279 (292)
T 2ghp_A 224 DENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLG 279 (292)
T ss_dssp CHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEET
T ss_pred CHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEEC
Confidence 9999999999976554432221 123457999999999999999 99998764
No 20
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.84 E-value=3.9e-21 Score=176.36 Aligned_cols=137 Identities=9% Similarity=0.088 Sum_probs=110.2
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHH---hcCCcceEEEEecc
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREY---IRNHFSWRVKFMDV 323 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~---L~G~~~~RIrF~r~ 323 (842)
++++||||||+.++||++|++.|++||+|.+|++.+ +||||||+|.+.+||.+|++. |+|+.+ ++.+...
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i-~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVI-DPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEEC-CCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEc-ccccccc
Confidence 579999999999999999999999999999999864 579999999999999999997 555432 3333322
Q ss_pred ccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC------CCceeeEEecChhhHHHHHHHh
Q 003170 324 GLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS------CEGALLMEFRTPEEATTAMAHL 397 (842)
Q Consensus 324 ~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~------~r~~afVEF~s~edAa~Am~~l 397 (842)
. .....+++|||||++..+++++|.+.|.++|.+-.+ .... ++++|||+|.+.++|..|++ +
T Consensus 81 ~---------~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~--~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~ 148 (167)
T 2cjk_A 81 R---------DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDA--QLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-N 148 (167)
T ss_dssp H---------HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEE--ECCCSSSSSTTSEEEEEEESSHHHHHHHHH-C
T ss_pred h---------hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEE--EEEEcCCCCccceEEEEEECCHHHHHHHHh-C
Confidence 1 012457899999999999999999999997655443 2232 24589999999999999998 6
Q ss_pred hhccc
Q 003170 398 RQHRK 402 (842)
Q Consensus 398 rg~R~ 402 (842)
++...
T Consensus 149 ~~~~~ 153 (167)
T 2cjk_A 149 KFIDF 153 (167)
T ss_dssp SEECS
T ss_pred CCEEe
Confidence 76655
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=3.3e-18 Score=153.47 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=64.8
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEec----CCceEEEEecChHHHHHHHHHhcCCcce----EEEEeccc
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 324 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~----~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~ 324 (842)
.+.+||||||+.++||+||+++|++||+|.+|.+.+ +||||||+|++.+||.+|++.|+|+.+. +|+++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 367899999999999999999999999999999865 5899999999999999999999999875 67776543
Q ss_pred cCCccccccccccccceEEEccCCCchhHH
Q 003170 325 LGTKGVINGVAVGSCFHVYVGNIPNQWAKD 354 (842)
Q Consensus 325 lGsrg~~~Gva~~~s~~LwVG~Iss~~~kE 354 (842)
..+..-.+.......+|||+|++..+++|
T Consensus 84 -~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 84 -KEREAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp -CC---------------------------
T ss_pred -cccccccccccCCCCceEeCCCCCCcccc
Confidence 11112222233556789999999988765
No 22
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=3.8e-16 Score=135.46 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=76.4
Q ss_pred CeEEecCCCCccCHHHHHHhccccCCcceEEEecC-CceEEEEecChHHHHHHHHHhcCCcce----EEEEeccccCCcc
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLGTKG 329 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~-RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~lGsrg 329 (842)
++||||||+.++|++||+++|++||+|.+|.+.+. ||||||+|.+.+||++|++.|+|..+. +|++++.....+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~- 79 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS- 79 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS-
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc-
Confidence 57999999999999999999999999999999885 999999999999999999999999775 888887642111
Q ss_pred ccccccc--cccceEEEccCC
Q 003170 330 VINGVAV--GSCFHVYVGNIP 348 (842)
Q Consensus 330 ~~~Gva~--~~s~~LwVG~Is 348 (842)
..++-.. ..+..||||++.
T Consensus 80 ~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 80 RFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCCSCCCSCCCCSCCCSCCCC
T ss_pred cCCCCCccccCCCceecCCCC
Confidence 1111111 347889999985
No 23
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.62 E-value=9.2e-16 Score=138.72 Aligned_cols=75 Identities=23% Similarity=0.329 Sum_probs=67.0
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce------EEEEec
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMD 322 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~------RIrF~r 322 (842)
....+++.||||||+.++||+||+++|++||+|.+|.+.+.||||||+|++.+||.+|++.|+|..+. +|.|+.
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 45578999999999999999999999999999999999999999999999999999999999997532 566654
Q ss_pred c
Q 003170 323 V 323 (842)
Q Consensus 323 ~ 323 (842)
.
T Consensus 96 ~ 96 (100)
T 3r27_A 96 S 96 (100)
T ss_dssp C
T ss_pred c
Confidence 3
No 24
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=136.76 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=68.4
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCc--ce----EEEEec
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF--SW----RVKFMD 322 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~--~~----RIrF~r 322 (842)
....++++||||||+.+++|+||+++|++||.|.+|++.+.||||||+|++.+||++|++.|+|.. +. +|+|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 445789999999999999999999999999999999999999999999999999999999998764 32 788876
Q ss_pred cc
Q 003170 323 VG 324 (842)
Q Consensus 323 ~~ 324 (842)
..
T Consensus 90 ~~ 91 (104)
T 1wex_A 90 SK 91 (104)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 25
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=130.97 Aligned_cols=77 Identities=22% Similarity=0.361 Sum_probs=70.8
Q ss_pred ccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEec
Q 003170 247 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 322 (842)
Q Consensus 247 ~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r 322 (842)
......++++||||||+.+++++||+++|++||+|++|++.++||||||+|++.++|++|++.|+|..+. +|+|++
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 8 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 3445678899999999999999999999999999999999999999999999999999999999999765 888876
Q ss_pred c
Q 003170 323 V 323 (842)
Q Consensus 323 ~ 323 (842)
.
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=134.30 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=65.2
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
.-...+||||||+.++||+||+++|++||+|.+|.+.+ +||||||+|.+.+||.+|++.|+|..+. +|+|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 33457899999999999999999999999999999853 6799999999999999999999999765 7777
Q ss_pred ecc
Q 003170 321 MDV 323 (842)
Q Consensus 321 ~r~ 323 (842)
+++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 765
No 27
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=127.18 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=66.5
Q ss_pred cccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHh-cCCcce----EEEEe
Q 003170 248 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYI-RNHFSW----RVKFM 321 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L-~G~~~~----RIrF~ 321 (842)
......+++||||||+.+++++||++.|++||+|.++.+.++||||||+|.+.++|.+|++.| +|..+. +|+|+
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 344567899999999999999999999999999999999999999999999999999999999 887654 55554
No 28
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=134.35 Aligned_cols=76 Identities=16% Similarity=0.119 Sum_probs=67.2
Q ss_pred cccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCC--cce----EEEEe
Q 003170 248 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH--FSW----RVKFM 321 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~--~~~----RIrF~ 321 (842)
.....++++||||||+.+++|+||+++|++||.|.+|++.+.||||||+|++.++|.+|++.|++. .+. +|.|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 445578999999999999999999999999999999999999999999999999999999998753 232 77777
Q ss_pred cc
Q 003170 322 DV 323 (842)
Q Consensus 322 r~ 323 (842)
+.
T Consensus 89 ~~ 90 (101)
T 2cq1_A 89 NH 90 (101)
T ss_dssp SC
T ss_pred Cc
Confidence 65
No 29
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1e-15 Score=137.88 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=65.8
Q ss_pred CCCCeEEecCCCC-ccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCc--ce----EEEEecc
Q 003170 252 SASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF--SW----RVKFMDV 323 (842)
Q Consensus 252 s~Sr~LwVGnL~~-dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~--~~----RIrF~r~ 323 (842)
.++++||||||+. ++||+||+++|++||.|.+|++.+.||||||+|++.+||++|++.|+|.. +. +|.|++.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 3789999999999 99999999999999999999999999999999999999999999999864 32 7777764
No 30
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1e-15 Score=141.24 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=62.2
Q ss_pred cCCCCCeEEe--cCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcc
Q 003170 250 IFSASKQLWL--GSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 250 v~s~Sr~LwV--GnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
...++++||| |||+.+++|++|+++|++||.|++|++..+||||||+|++.+||++|++.|+|+.+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3457899999 88999999999999999999999999999999999999999999999999999864
No 31
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.7e-15 Score=138.02 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=60.6
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCC
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH 313 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~ 313 (842)
+-..++++||||||+.++||+||+++|++||.|.+|++.+.||||||+|++.+||++|++.|+|.
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~ 75 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSV 75 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccC
Confidence 34567899999999999999999999999999999999999999999999999999999999763
No 32
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.58 E-value=5.9e-15 Score=130.72 Aligned_cols=101 Identities=14% Similarity=0.182 Sum_probs=86.1
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec---CCceEEEEecChHHHHHHHHHhcCCcce----EEEEecc
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 323 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~---~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~ 323 (842)
..++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||.+|++.|+|..+. +|+|++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 35689999999999999999999999999999999853 6899999999999999999999999775 7888765
Q ss_pred ccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCC
Q 003170 324 GLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP 368 (842)
Q Consensus 324 ~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~ 368 (842)
.-. . +++.....+|++...+.++|.-+.
T Consensus 85 ~~~-------------~----~~~~~~~~~~~l~~~~~~~g~~~~ 112 (115)
T 3lqv_A 85 NRA-------------F----QKMDTKKKEEQLKLLKEKYGINTD 112 (115)
T ss_dssp HHH-------------T----TTSCHHHHHHHHHHHHHHHCCCCS
T ss_pred Chh-------------h----hhhhHhHhHHHHHHHHHHhCCCCC
Confidence 310 0 567777888999988888877553
No 33
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.8e-15 Score=127.96 Aligned_cols=75 Identities=28% Similarity=0.452 Sum_probs=68.2
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce------EEEEecc
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMDV 323 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~------RIrF~r~ 323 (842)
-..++++||||||+.+++++||+++|++||+|++|.+.+.||||||+|.+.+||++|++.|+|..+. +|+|+++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 3467899999999999999999999999999999999999999999999999999999999998653 7777765
Q ss_pred c
Q 003170 324 G 324 (842)
Q Consensus 324 ~ 324 (842)
.
T Consensus 93 ~ 93 (97)
T 1why_A 93 G 93 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8e-15 Score=127.53 Aligned_cols=79 Identities=16% Similarity=0.263 Sum_probs=70.7
Q ss_pred cccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec----CCceEEEEecChHHHHHHHHHhcCCcce----E
Q 003170 246 AAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----R 317 (842)
Q Consensus 246 ~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~----~RGFAFVeF~~i~DA~~A~~~L~G~~~~----R 317 (842)
..+.....+++||||||+.+++++||+++|++||+|.+|.+.+ .||||||+|.+.+||.+|++.|+|..+. +
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 7 GMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 3455667899999999999999999999999999999999976 6899999999999999999999998765 7
Q ss_pred EEEeccc
Q 003170 318 VKFMDVG 324 (842)
Q Consensus 318 IrF~r~~ 324 (842)
|+|++..
T Consensus 87 V~~a~~~ 93 (103)
T 2cqi_A 87 VNWATTP 93 (103)
T ss_dssp EEECCCT
T ss_pred EEECCCC
Confidence 7887664
No 35
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.57 E-value=4.3e-15 Score=133.72 Aligned_cols=73 Identities=11% Similarity=0.096 Sum_probs=65.4
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
..+.++||||||+.+++|++|+++|++||+|++|.+. ++||||||+|++.+||.+|++.|+|+.+. +|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3578999999999999999999999999999999985 37899999999999999999999999765 6666
Q ss_pred ecc
Q 003170 321 MDV 323 (842)
Q Consensus 321 ~r~ 323 (842)
++.
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 543
No 36
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3.2e-15 Score=137.31 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=66.0
Q ss_pred CCCCCeEEecCCCCc-cCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCc--ce----EEEEecc
Q 003170 251 FSASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF--SW----RVKFMDV 323 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~d-vtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~--~~----RIrF~r~ 323 (842)
..++++||||||+.+ ++|+||+++|++||.|.+|++.++||||||+|++.+||++|++.|+|.. +. +|.|++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 567999999999998 9999999999999999999999999999999999999999999997653 32 7777754
No 37
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.3e-15 Score=129.52 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=63.3
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
+-...+++||||||+.+++++||+++|++||.|.++.+.++||||||+|.+.+||.+|++.|+|..+.
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 33455799999999999999999999999999999999999999999999999999999999998754
No 38
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.3e-15 Score=137.11 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=66.5
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCC--cce----EEEEecc
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH--FSW----RVKFMDV 323 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~--~~~----RIrF~r~ 323 (842)
...++++||||||+.++||+||+++|++||.|.+|++.+.||||||+|++.+||.+|++.|+|. .+. +|.|++.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 3467899999999999999999999999999999999999999999999999999999999863 332 7888765
No 39
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.7e-15 Score=126.81 Aligned_cols=79 Identities=19% Similarity=0.298 Sum_probs=70.8
Q ss_pred cccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce---
Q 003170 246 AAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW--- 316 (842)
Q Consensus 246 ~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~--- 316 (842)
...+....+++||||||+.+++++||+++|++||+|++|.+.+ .||||||+|++.+||++|++.|+|..+.
T Consensus 4 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 4 GSSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp SCCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3445567889999999999999999999999999999999965 6899999999999999999999999775
Q ss_pred -EEEEeccc
Q 003170 317 -RVKFMDVG 324 (842)
Q Consensus 317 -RIrF~r~~ 324 (842)
+|+|++..
T Consensus 84 l~v~~a~~~ 92 (102)
T 1x5s_A 84 IRVDQAGKS 92 (102)
T ss_dssp CEEEEEECC
T ss_pred EEEEECCCC
Confidence 88888764
No 40
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.56 E-value=3.1e-15 Score=133.69 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=63.8
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
.|.-||||||...+||++|+++|.+||+|.+|.+..+||||||+|.+.+||++|++.|||..+. |++|+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4778999999999999999999999999999999999999999999999999999999998765 55554
No 41
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.56 E-value=6.7e-15 Score=123.55 Aligned_cols=73 Identities=21% Similarity=0.362 Sum_probs=63.5
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
..++++||||||+.+++++||++.|++||+|.++.+.+ +||||||+|.+.+||++|++.|+|..+. +|++
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 35788999999999999999999999999999999865 4799999999999999999999998765 6776
Q ss_pred ecc
Q 003170 321 MDV 323 (842)
Q Consensus 321 ~r~ 323 (842)
++.
T Consensus 83 a~~ 85 (87)
T 3bs9_A 83 ATR 85 (87)
T ss_dssp EC-
T ss_pred cCC
Confidence 654
No 42
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.56 E-value=7.5e-15 Score=122.76 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=64.3
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
..++++||||||+.+++++||++.|++||+|+++.+.+ .+|||||+|.+.+||.+|++.|+|..+. +|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46789999999999999999999999999999999853 6899999999999999999999999765 5665
Q ss_pred e
Q 003170 321 M 321 (842)
Q Consensus 321 ~ 321 (842)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 4
No 43
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.56 E-value=7e-15 Score=122.44 Aligned_cols=70 Identities=14% Similarity=0.229 Sum_probs=63.6
Q ss_pred CCeEEecCCCCccCHHHHHHhccccCCcceEEEecC------CceEEEEecChHHHHHHHHHhcCCcce----EEEEecc
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 323 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~------RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~ 323 (842)
+.+||||||+.+++++||++.|++||+|.++.+.+. +|||||+|.+.+||++|++.|+|..+. +|++++.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 578999999999999999999999999999998754 899999999999999999999999765 6776654
No 44
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.7e-15 Score=125.85 Aligned_cols=77 Identities=21% Similarity=0.169 Sum_probs=67.4
Q ss_pred ccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce----
Q 003170 247 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW---- 316 (842)
Q Consensus 247 ~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~---- 316 (842)
...-..++++||||||+.+++++||+++|++||+|++|.+. +.||||||+|.+.++|.+|++.|+|..+.
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34456778999999999999999999999999999999985 35799999999999999999999998765
Q ss_pred EEEEecc
Q 003170 317 RVKFMDV 323 (842)
Q Consensus 317 RIrF~r~ 323 (842)
+|+|++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 6666554
No 45
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=126.85 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=70.3
Q ss_pred cccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecC-------CceEEEEecChHHHHHHHHHh-cCCcce-
Q 003170 246 AAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-------KGFALVEYINIIDAIRAREYI-RNHFSW- 316 (842)
Q Consensus 246 ~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~-------RGFAFVeF~~i~DA~~A~~~L-~G~~~~- 316 (842)
.......++++||||||+.+++++||+++|++||+|++|.+.+. ||||||+|.+.+||.+|++.| +|..+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 7 GQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp CSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred cccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 34455678899999999999999999999999999999999765 899999999999999999999 898765
Q ss_pred ---EEEEeccc
Q 003170 317 ---RVKFMDVG 324 (842)
Q Consensus 317 ---RIrF~r~~ 324 (842)
+|+|++..
T Consensus 87 ~~l~v~~a~~~ 97 (107)
T 2cph_A 87 RRLVLEWADSE 97 (107)
T ss_dssp CBCEEEECCCC
T ss_pred CEEEEEeCCCC
Confidence 88888764
No 46
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-15 Score=135.35 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=66.8
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEeccc
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 324 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~ 324 (842)
..++||||||+.+++++||+++|++||+|.+|.+.+.||||||+|.+.+||.+|++.|+|..+. +|+|+...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999765 77877653
No 47
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.55 E-value=8e-15 Score=126.32 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=65.1
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEec
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 322 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r 322 (842)
++++||||||+.+++++||++.|++||+|.++.+.. +||||||+|.+.+||.+|++.|+|..+. +|+|++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 589999999999999999999999999999999864 4899999999999999999999998765 777776
Q ss_pred c
Q 003170 323 V 323 (842)
Q Consensus 323 ~ 323 (842)
.
T Consensus 81 ~ 81 (96)
T 2x1f_A 81 N 81 (96)
T ss_dssp C
T ss_pred C
Confidence 5
No 48
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.55 E-value=6.7e-15 Score=125.71 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=66.3
Q ss_pred cccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce----EE
Q 003170 248 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RV 318 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RI 318 (842)
.....++++||||||+.+++++||+++|++||+|++|.+.+ +||||||+|++.+||.+|++.|+|..+. +|
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 34456789999999999999999999999999999999975 4799999999999999999999999765 66
Q ss_pred EEecc
Q 003170 319 KFMDV 323 (842)
Q Consensus 319 rF~r~ 323 (842)
+|++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 66553
No 49
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.7e-14 Score=125.42 Aligned_cols=77 Identities=23% Similarity=0.265 Sum_probs=69.2
Q ss_pred cccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec----CCceEEEEecChHHHHHHHHHhcCCcce----EEE
Q 003170 248 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 319 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~----~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIr 319 (842)
......+++||||||+.+++++||+++|++||+|++|.+.. .||||||+|++.+||.+|++.|+|..+. +|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567789999999999999999999999999999999975 4899999999999999999999999765 778
Q ss_pred Eeccc
Q 003170 320 FMDVG 324 (842)
Q Consensus 320 F~r~~ 324 (842)
+++..
T Consensus 89 ~a~~~ 93 (103)
T 2cq3_A 89 NATAR 93 (103)
T ss_dssp ECCSS
T ss_pred EcccC
Confidence 77653
No 50
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=124.04 Aligned_cols=74 Identities=9% Similarity=0.205 Sum_probs=65.5
Q ss_pred cccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----E
Q 003170 248 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----R 317 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----R 317 (842)
.....++++||||||+.+++++||+++|++||+|++|.+.+ +||||||+|++.+||++|++.|+|..+. +
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34456789999999999999999999999999999999854 5899999999999999999999998765 5
Q ss_pred EEEe
Q 003170 318 VKFM 321 (842)
Q Consensus 318 IrF~ 321 (842)
|+|+
T Consensus 90 v~~a 93 (94)
T 2e5h_A 90 ASIA 93 (94)
T ss_dssp EEEC
T ss_pred EEec
Confidence 5554
No 51
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.8e-14 Score=123.02 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=67.3
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
+++++||||||+.+++++||+++|++||+|.+|.+.+ +||||||+|++.+||.+|++.|+|..+. +|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 5789999999999999999999999999999999865 5799999999999999999999998775 88888
Q ss_pred ccc
Q 003170 322 DVG 324 (842)
Q Consensus 322 r~~ 324 (842)
+..
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 764
No 52
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.2e-15 Score=126.96 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=69.0
Q ss_pred cccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----E
Q 003170 248 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----R 317 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----R 317 (842)
.+...++++||||||+.+++++||+++|++||+|++|.+.. .||||||+|.+.+||++|++.|+|..+. +
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34556899999999999999999999999999999999854 6899999999999999999999998775 7
Q ss_pred EEEeccc
Q 003170 318 VKFMDVG 324 (842)
Q Consensus 318 IrF~r~~ 324 (842)
|+|++..
T Consensus 86 V~~a~~~ 92 (102)
T 2cqb_A 86 VNLAKPM 92 (102)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 7777664
No 53
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=126.04 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=68.9
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe----cCCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF----PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~----~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
....++++||||||+.++|++||+++|++||+|++|.+. ..+|||||+|.+.++|++|++.|+|..+. +|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 344578999999999999999999999999999999998 46999999999999999999999999876 8888
Q ss_pred eccc
Q 003170 321 MDVG 324 (842)
Q Consensus 321 ~r~~ 324 (842)
++..
T Consensus 90 a~~~ 93 (103)
T 2d9p_A 90 AQRK 93 (103)
T ss_dssp CSSC
T ss_pred eccc
Confidence 8764
No 54
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.7e-15 Score=129.06 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=69.3
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEeccc
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 324 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~ 324 (842)
-....++||||||+.+++++||+++|++||+|.+|.+.+.||||||+|++.+||++|++.|+|..+. +|+|++..
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 4456899999999999999999999999999999999999999999999999999999999998775 78887764
No 55
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=123.09 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=66.4
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEeccc
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 324 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~ 324 (842)
..++++||||||+.+++++||++.|++||+|++|.+. ||||||+|++.+||++|++.|+|..+. +|++++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 4678999999999999999999999999999999998 899999999999999999999998765 88887654
No 56
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=8.1e-15 Score=126.16 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=66.2
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe---------cCCceEEEEecChHHHHHHHHHhcCCcce----EE
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---------PIKGFALVEYINIIDAIRAREYIRNHFSW----RV 318 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~---------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RI 318 (842)
.++++||||||+.+++|+||+++|++||+|++|.+. ..||||||+|.+.+||++|++.|+|..+. +|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 468999999999999999999999999999999986 45799999999999999999999999765 77
Q ss_pred EEeccc
Q 003170 319 KFMDVG 324 (842)
Q Consensus 319 rF~r~~ 324 (842)
++++..
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 777654
No 57
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.54 E-value=5.5e-15 Score=135.76 Aligned_cols=115 Identities=19% Similarity=0.217 Sum_probs=87.3
Q ss_pred CCCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcce
Q 003170 204 NHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH 283 (842)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIes 283 (842)
-.|+.|++.|.|..++..||...-.-..+..-.+-| . .........+++||||||+.++|+++|++.|++||.|++
T Consensus 49 ~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~ 124 (175)
T 3nmr_A 49 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKP---A-DSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEE 124 (175)
T ss_dssp EEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE---C-GGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred EEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcc---c-cccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEE
Confidence 359999999999999998876542111222211111 1 111223346889999999999999999999999999999
Q ss_pred EEEec-----CCceEEEEecChHHHHHHHHHhcCCcce-------EEEEec
Q 003170 284 FFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW-------RVKFMD 322 (842)
Q Consensus 284 V~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~-------RIrF~r 322 (842)
+.+.+ +||||||+|.+.+||.+|++.|+|..+. +|+|++
T Consensus 125 v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 125 CRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99976 4899999999999999999999998542 666653
No 58
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.5e-14 Score=125.86 Aligned_cols=75 Identities=20% Similarity=0.184 Sum_probs=67.8
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec---CCceEEEEecChHHHHHHHHHhcCCcce----EEEEec
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 322 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~---~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r 322 (842)
...++++||||||+.++|++||+++|++||+|++|.+.. .||||||+|++.+||++|++.|+|..+. +|+|++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 345789999999999999999999999999999999865 6899999999999999999999999775 788876
Q ss_pred cc
Q 003170 323 VG 324 (842)
Q Consensus 323 ~~ 324 (842)
..
T Consensus 98 ~~ 99 (109)
T 1x4a_A 98 SG 99 (109)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 59
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=124.09 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=67.2
Q ss_pred CccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcce--------EEEec------CCceEEEEecChHHHHHHHHH
Q 003170 244 DPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFFFP------IKGFALVEYINIIDAIRAREY 309 (842)
Q Consensus 244 ~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIes--------V~~~~------~RGFAFVeF~~i~DA~~A~~~ 309 (842)
++.......+.++||||||+.+++++||++.|++||.|.+ +.+.. .||||||+|.+.+||.+|++.
T Consensus 3 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 3 HHHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp SSCSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 3344555678899999999999999999999999999999 88754 479999999999999999999
Q ss_pred hcCCcce----EEEEe
Q 003170 310 IRNHFSW----RVKFM 321 (842)
Q Consensus 310 L~G~~~~----RIrF~ 321 (842)
|+|..+. +|+++
T Consensus 83 l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 83 FDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HTTCBSSSSBCEEEEC
T ss_pred hCCCEeCCcEEEEEec
Confidence 9998764 55554
No 60
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1e-14 Score=124.86 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=66.7
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceE-EEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHF-FFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV-~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
+++++||||||+.+++++||+++|++||+|.++ ++.+ +||||||+|.+.+||++|++.|+|..+. +|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 578999999999999999999999999999999 8765 5899999999999999999999999775 7888
Q ss_pred eccc
Q 003170 321 MDVG 324 (842)
Q Consensus 321 ~r~~ 324 (842)
++..
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 7654
No 61
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.53 E-value=5.4e-15 Score=137.13 Aligned_cols=130 Identities=15% Similarity=0.208 Sum_probs=90.5
Q ss_pred ccccCCCCCCCCCCCCCCCccccccccCCC-CCCCC--Ccccccccceee-----eccCCccccccCCCCCeEEecCCCC
Q 003170 193 LHFRNNSFEGRNHFPGRSSSEGASNALLSP-NHHLP--VPYASTTSQIVW-----YFDEDPAAMDIFSASKQLWLGSFGP 264 (842)
Q Consensus 193 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~p--~~~~g~~~~~v~-----~~~g~~~~~~v~s~Sr~LwVGnL~~ 264 (842)
|...++.|.|.. ++.+.+.+.|..++..+ |+..= .+.+........ ..............+++||||||+.
T Consensus 5 l~l~g~~l~G~~-~ve~~~~~~A~~a~~~~~ng~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~ 83 (150)
T 2i2y_A 5 LILNGKTLKGET-TTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGN 83 (150)
T ss_dssp EEECCSSSCEEE-EEECSSHHHHTTTHHHHHHHHTCCCEEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCS
T ss_pred eeeccccccccc-eeeecCHHHHHHHHHHHhcCCCCCCceecccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 445556665544 34466777777777655 33211 111000000000 0011123345566789999999999
Q ss_pred ccCHHHHHHhccccCCcceEEEecC-CceEEEEecChHHHHHHHHHhcCCcce----EEEEecc
Q 003170 265 EASEAHIRFQIDRFGPLEHFFFFPI-KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 323 (842)
Q Consensus 265 dvtE~dL~~~F~rfGpIesV~~~~~-RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~ 323 (842)
++|++||+++|++||.|++|++.+. ||||||+|.+.++|.+|++.|+|..+. +|+|+++
T Consensus 84 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 84 NGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp CCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 9999999999999999999999874 999999999999999999999999775 7887765
No 62
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.5e-14 Score=125.45 Aligned_cols=75 Identities=16% Similarity=0.092 Sum_probs=67.4
Q ss_pred cCCCCCeEEecCCCCccCHHHHH----HhccccCCcceEEEecC---CceEEEEecChHHHHHHHHHhcCCcce----EE
Q 003170 250 IFSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFFPI---KGFALVEYINIIDAIRAREYIRNHFSW----RV 318 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~----~~F~rfGpIesV~~~~~---RGFAFVeF~~i~DA~~A~~~L~G~~~~----RI 318 (842)
.....++||||||+.+++++||+ ++|++||+|.+|.+... ||||||+|++.+||.+|++.|+|..+. +|
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 35667899999999999999999 99999999999999754 899999999999999999999999775 77
Q ss_pred EEeccc
Q 003170 319 KFMDVG 324 (842)
Q Consensus 319 rF~r~~ 324 (842)
++++..
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 777653
No 63
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.53 E-value=1.9e-14 Score=125.46 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=67.9
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcc---e---
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS---W--- 316 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~---~--- 316 (842)
.....+++||||||+.+++|+||+++|++||+|.+|.+.+ +||||||+|.+.+||++|++.|+|..+ .
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456789999999999999999999999999999999865 689999999999999999999999876 3
Q ss_pred -EEEEeccc
Q 003170 317 -RVKFMDVG 324 (842)
Q Consensus 317 -RIrF~r~~ 324 (842)
+|++++..
T Consensus 88 l~v~~a~~~ 96 (106)
T 2dgp_A 88 IQVKPADSE 96 (106)
T ss_dssp CEEEECCCC
T ss_pred EEEEECCcc
Confidence 88888653
No 64
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=1.3e-14 Score=124.40 Aligned_cols=74 Identities=12% Similarity=0.313 Sum_probs=66.4
Q ss_pred cCCCCCeEEecCCCCccCHHHHH----HhccccCCcceEEEe---cCCceEEEEecChHHHHHHHHHhcCCcce----EE
Q 003170 250 IFSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFF---PIKGFALVEYINIIDAIRAREYIRNHFSW----RV 318 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~----~~F~rfGpIesV~~~---~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RI 318 (842)
-..++++||||||+.+++++||+ +.|++||+|.+|.+. .+||||||+|.+.+||.+|++.|+|..+. +|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 35689999999999999999999 999999999999987 57999999999999999999999998765 77
Q ss_pred EEecc
Q 003170 319 KFMDV 323 (842)
Q Consensus 319 rF~r~ 323 (842)
+|++.
T Consensus 84 ~~a~~ 88 (97)
T 1nu4_A 84 QYAKT 88 (97)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 77765
No 65
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=121.22 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=64.3
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
.+++||||||+.+++++||++.|++||+|.++.+.. .+|||||+|.+.+||.+|++.|+|..+. +|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999842 7899999999999999999999999775 66766
Q ss_pred cc
Q 003170 322 DV 323 (842)
Q Consensus 322 r~ 323 (842)
++
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 66
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.2e-14 Score=125.04 Aligned_cols=78 Identities=22% Similarity=0.260 Sum_probs=68.4
Q ss_pred cccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce---
Q 003170 246 AAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW--- 316 (842)
Q Consensus 246 ~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~--- 316 (842)
........+++||||||+.++++++|+++|++||+|.+|.+.. +||||||+|.+.++|.+|++.|+|..+.
T Consensus 15 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 15 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 3344456789999999999999999999999999999999864 4899999999999999999999999765
Q ss_pred -EEEEecc
Q 003170 317 -RVKFMDV 323 (842)
Q Consensus 317 -RIrF~r~ 323 (842)
+|++++.
T Consensus 95 l~V~~a~~ 102 (106)
T 1p27_B 95 ISVDWCFV 102 (106)
T ss_dssp CEEEESEE
T ss_pred EEEEeecC
Confidence 7777765
No 67
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.53 E-value=2.2e-14 Score=124.83 Aligned_cols=73 Identities=22% Similarity=0.343 Sum_probs=65.6
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecC-----CceEEEEecChHHHHHHHHHhcCCcc-------eEEE
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFS-------WRVK 319 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~-----RGFAFVeF~~i~DA~~A~~~L~G~~~-------~RIr 319 (842)
.++++||||||+.+++++||+++|++||+|.+|.+... ||||||+|.+.+||++|++.|+|+.+ .+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 56899999999999999999999999999999999764 89999999999999999999999854 2677
Q ss_pred Eeccc
Q 003170 320 FMDVG 324 (842)
Q Consensus 320 F~r~~ 324 (842)
|++..
T Consensus 93 ~a~~~ 97 (105)
T 2dnh_A 93 FADTD 97 (105)
T ss_dssp ESCSS
T ss_pred ECccC
Confidence 77653
No 68
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.52 E-value=2.4e-14 Score=125.06 Aligned_cols=74 Identities=11% Similarity=0.169 Sum_probs=64.9
Q ss_pred cccCCCCCeEEecCCCC-ccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEec
Q 003170 248 MDIFSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 322 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~-dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r 322 (842)
.....++++||||||+. +++++||++.|++||.|.++.+ .||||||+|++.+||.+|++.|+|..+. +|+|++
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 34456799999999998 9999999999999999999998 4899999999999999999999999764 677665
Q ss_pred c
Q 003170 323 V 323 (842)
Q Consensus 323 ~ 323 (842)
.
T Consensus 94 ~ 94 (97)
T 2xnq_A 94 S 94 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 69
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.1e-14 Score=124.23 Aligned_cols=75 Identities=12% Similarity=0.224 Sum_probs=65.4
Q ss_pred cccCCCCCeEEecCCCC-ccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEec
Q 003170 248 MDIFSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 322 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~-dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r 322 (842)
+.-..++++||||||+. +++++||++.|++||+|.+|.+. ||||||+|++.+||.+|++.|+|..+. +|++++
T Consensus 4 ~~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 4 MHNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred cccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 34467899999999998 99999999999999999999994 899999999999999999999999875 888886
Q ss_pred cc
Q 003170 323 VG 324 (842)
Q Consensus 323 ~~ 324 (842)
..
T Consensus 82 ~~ 83 (96)
T 2kvi_A 82 SN 83 (96)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 70
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.2e-14 Score=125.77 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=69.0
Q ss_pred ccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhc------C
Q 003170 245 PAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIR------N 312 (842)
Q Consensus 245 ~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~------G 312 (842)
........++++||||||+.+++++||+++|++||+|.+|.+. .+||||||+|.+.+||.+|++.|+ |
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 6 SGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 3344556779999999999999999999999999999999986 368999999999999999999999 8
Q ss_pred Ccce----EEEEecc
Q 003170 313 HFSW----RVKFMDV 323 (842)
Q Consensus 313 ~~~~----RIrF~r~ 323 (842)
..+. +|+++..
T Consensus 86 ~~~~g~~l~v~~a~~ 100 (111)
T 1x4h_A 86 LKLDGRQLKVDLAVT 100 (111)
T ss_dssp EESSSCEEEEECCCC
T ss_pred cEEcCEEEEEEECCC
Confidence 7765 6676655
No 71
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=121.43 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=67.1
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEeccc
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 324 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~ 324 (842)
+-..++++||||||+.++|++||+++|++||+|+++.+. |+||||+|.+.+||.+|++.|+|..+. +|++++..
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 345678999999999999999999999999999999997 569999999999999999999999775 78887764
No 72
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.9e-14 Score=125.79 Aligned_cols=78 Identities=12% Similarity=0.183 Sum_probs=69.7
Q ss_pred cccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce----
Q 003170 246 AAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW---- 316 (842)
Q Consensus 246 ~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~---- 316 (842)
.......++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.+||++|++.|+|+.+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 7 GALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 4455567789999999999999999999999999999999876 4899999999999999999999999876
Q ss_pred EEEEecc
Q 003170 317 RVKFMDV 323 (842)
Q Consensus 317 RIrF~r~ 323 (842)
+|++++.
T Consensus 87 ~v~~a~~ 93 (114)
T 2do0_A 87 HVKMDER 93 (114)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 7787764
No 73
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.52 E-value=1.6e-14 Score=122.74 Aligned_cols=74 Identities=14% Similarity=0.032 Sum_probs=67.5
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec----CCceEEEEecChHHHHHHHHHhcCCcce----EEEEec
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 322 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~----~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r 322 (842)
..++++||||||+.+++++||+++|++||+|.++.+.+ .||||||+|.+.+||++|++.|+|..+. +|++++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 46789999999999999999999999999999999875 6899999999999999999999998765 777776
Q ss_pred cc
Q 003170 323 VG 324 (842)
Q Consensus 323 ~~ 324 (842)
..
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 74
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.4e-14 Score=126.41 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=72.6
Q ss_pred cCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcc--------eEEEec------CCceEEEEecChHHHHHHH
Q 003170 242 DEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLE--------HFFFFP------IKGFALVEYINIIDAIRAR 307 (842)
Q Consensus 242 ~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIe--------sV~~~~------~RGFAFVeF~~i~DA~~A~ 307 (842)
.|.+....-...+++||||||+.++|++||+++|++||.|. .|.+.. .||||||+|.+.+||.+|+
T Consensus 3 ~g~p~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 82 (113)
T 2cpe_A 3 SGSSGDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAV 82 (113)
T ss_dssp SSCCCCCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHH
T ss_pred CCCCCCcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHH
Confidence 35566667778899999999999999999999999999999 588754 5899999999999999999
Q ss_pred HHhcCCcce----EEEEeccc
Q 003170 308 EYIRNHFSW----RVKFMDVG 324 (842)
Q Consensus 308 ~~L~G~~~~----RIrF~r~~ 324 (842)
+.|+|..+. +|++++..
T Consensus 83 ~~l~g~~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 83 EWFDGKDFQGSKLKVSLARKK 103 (113)
T ss_dssp HHHTTCEETTEECEEECSSCC
T ss_pred HHcCCCccCCCEEEEEECCCC
Confidence 999999776 77777654
No 75
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.52 E-value=3.4e-14 Score=128.03 Aligned_cols=74 Identities=19% Similarity=0.367 Sum_probs=67.7
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
...+++||||||+.+++++||+++|++||+|++|.+.. .+|||||+|.+.+||++|++.|+|..+. +|+++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45689999999999999999999999999999999976 4599999999999999999999999876 88888
Q ss_pred ccc
Q 003170 322 DVG 324 (842)
Q Consensus 322 r~~ 324 (842)
+..
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 76
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.2e-14 Score=124.33 Aligned_cols=73 Identities=22% Similarity=0.257 Sum_probs=64.9
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCC-cceEEEecCCceEEEEecChHHHHHHHHHhcC-Ccce----EEEEeccc
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFFPIKGFALVEYINIIDAIRAREYIRN-HFSW----RVKFMDVG 324 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGp-IesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G-~~~~----RIrF~r~~ 324 (842)
..++++||||||+.++|++||+++|++||. |+.+.+ ..||||||+|.+.+||++|++.|+| ..+. +|++++..
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 356899999999999999999999999999 777666 6799999999999999999999999 7665 78887663
No 77
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.52 E-value=3.2e-14 Score=125.98 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=68.5
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecC------CceEEEEecChHHHHHHHHHhcCCcce----EE
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RV 318 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~------RGFAFVeF~~i~DA~~A~~~L~G~~~~----RI 318 (842)
....++++||||||+.+++++||+++|++||.|++|.+.+. ||||||+|.+.+||++|++.|+|..+. +|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999998753 799999999999999999999998775 88
Q ss_pred EEeccc
Q 003170 319 KFMDVG 324 (842)
Q Consensus 319 rF~r~~ 324 (842)
+|++..
T Consensus 90 ~~a~~~ 95 (115)
T 2dgo_A 90 NWATRK 95 (115)
T ss_dssp EESSCC
T ss_pred EEccCC
Confidence 888764
No 78
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.2e-14 Score=123.75 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=68.0
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EE
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 318 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RI 318 (842)
.-..++++||||||+.+++++||+++|++||+|.+|.+.. +||||||+|.+.+||.+|++.|+|..+. +|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3456789999999999999999999999999999999864 4799999999999999999999999775 77
Q ss_pred EEeccc
Q 003170 319 KFMDVG 324 (842)
Q Consensus 319 rF~r~~ 324 (842)
+|++..
T Consensus 90 ~~a~~~ 95 (103)
T 2cq0_A 90 EWAKPS 95 (103)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 887664
No 79
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.8e-14 Score=121.23 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=65.9
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEeccc
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 324 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~ 324 (842)
..++++||||||+.+++++||+++|++||+|+++.+. |+||||+|++.+||.+|++.|+|..+. +|++++..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 4678999999999999999999999999999999997 569999999999999999999999775 77887654
No 80
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=133.17 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=65.6
Q ss_pred CCCCCeEEecCCCCccCHHHHH----HhccccCCcceEEEe---cCCceEEEEecChHHHHHHHHHhcCCcce----EEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFF---PIKGFALVEYINIIDAIRAREYIRNHFSW----RVK 319 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~----~~F~rfGpIesV~~~---~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIr 319 (842)
..++++||||||+.+++++||+ ++|++||+|.+|.+. ++||||||+|.+.+||.+|++.|+|..+. +|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3568999999999999999976 689999999999985 58999999999999999999999999765 888
Q ss_pred Eecc
Q 003170 320 FMDV 323 (842)
Q Consensus 320 F~r~ 323 (842)
|++.
T Consensus 106 ~a~~ 109 (127)
T 2a3j_A 106 FSET 109 (127)
T ss_dssp ECCC
T ss_pred EccC
Confidence 8764
No 81
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1e-14 Score=122.58 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=60.4
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
+++++||||||+.+++++||++.|++||+|.++.+.. +||||||+|.+.+||.+|++.|+|+.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 5789999999999999999999999999999999864 4899999999999999999999998643
No 82
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=9.9e-15 Score=132.60 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=89.7
Q ss_pred CCCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcce
Q 003170 204 NHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH 283 (842)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIes 283 (842)
-.|++|++.|.|..++..+|+..= .|..-.+-|. .+-.......+++|||+||+.++++++|++.|++||.|++
T Consensus 43 ~afV~f~~~~~a~~A~~~l~~~~~---~g~~i~v~~~---~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 116 (166)
T 3md3_A 43 YAFVEYHQSHDANIALQTLNGKQI---ENNIVKINWA---FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLS 116 (166)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEE---TTEECEEEEC---CCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEE
T ss_pred EEEEEeCCHHHHHHHHHHcCCCcc---CCCeeEEEEc---CCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeE
Confidence 369999999999999988776531 2332222231 2222344567889999999999999999999999999999
Q ss_pred EEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEec
Q 003170 284 FFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 322 (842)
Q Consensus 284 V~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r 322 (842)
+.+.+ ++|||||+|.+.+||.+|++.|+|..+. +|+|++
T Consensus 117 ~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 117 GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 99864 5899999999999999999999999765 666654
No 83
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=122.26 Aligned_cols=74 Identities=16% Similarity=0.304 Sum_probs=64.8
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcc-eEEEec------CCceEEEEecChHHHHHHHHHhcCCcce-------
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW------- 316 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIe-sV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~------- 316 (842)
..++++||||||+.+++|+||+++|++||+|. +|.+.+ +||||||+|.+.+||++|++.|+|..+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45789999999999999999999999999999 999865 4599999999999999999999998653
Q ss_pred -EEEEeccc
Q 003170 317 -RVKFMDVG 324 (842)
Q Consensus 317 -RIrF~r~~ 324 (842)
+|+|++.+
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 55666543
No 84
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.3e-14 Score=126.35 Aligned_cols=75 Identities=24% Similarity=0.275 Sum_probs=66.9
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec----CCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~----~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
.....+++||||||+.+++++||++.|++||+|++|.+.. +||||||+|++.+||++|++.|+|..+. +|++
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3455789999999999999999999999999999999975 4899999999999999999999999765 6666
Q ss_pred ecc
Q 003170 321 MDV 323 (842)
Q Consensus 321 ~r~ 323 (842)
++.
T Consensus 104 a~~ 106 (109)
T 2err_A 104 ATA 106 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 85
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.51 E-value=2.5e-14 Score=126.34 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=66.4
Q ss_pred ccCCCCCeEEecCCCCc-cCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEecc
Q 003170 249 DIFSASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 323 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~d-vtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~ 323 (842)
+....+++||||||+.+ ++++||+++|++||+|++|.+ .||||||+|++.+||++|++.|+|..+. +|++++.
T Consensus 22 ~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 22 DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34456799999999999 999999999999999999999 7999999999999999999999999775 7787764
No 86
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.2e-14 Score=122.19 Aligned_cols=73 Identities=18% Similarity=0.281 Sum_probs=66.3
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
..++++||||||+.+++++||+++|++||+|++|.+.. +||||||+|.+.++|++|++ |+|..+. +|++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 35789999999999999999999999999999999854 68999999999999999999 9998775 8888
Q ss_pred eccc
Q 003170 321 MDVG 324 (842)
Q Consensus 321 ~r~~ 324 (842)
++..
T Consensus 86 a~~~ 89 (99)
T 2dgs_A 86 AEPR 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 87
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.51 E-value=3.1e-14 Score=124.30 Aligned_cols=74 Identities=18% Similarity=0.131 Sum_probs=65.7
Q ss_pred cccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce----EE
Q 003170 248 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RV 318 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RI 318 (842)
..-..++++||||||+.+++++||+++|++||+|.+|.+.. ++|||||+|.+.+||.+|++.|+|..+. +|
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34457789999999999999999999999999999999873 5899999999999999999999999765 55
Q ss_pred EEe
Q 003170 319 KFM 321 (842)
Q Consensus 319 rF~ 321 (842)
+|+
T Consensus 103 ~~a 105 (107)
T 3ulh_A 103 QLV 105 (107)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 88
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.7e-14 Score=123.12 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=66.1
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
.++++||||||+.+++++||+++|++||+|++|.+.. .||||||+|.+.+||.+|++.|+|..+. +|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5689999999999999999999999999999999864 5699999999999999999999998765 77777
Q ss_pred ccc
Q 003170 322 DVG 324 (842)
Q Consensus 322 r~~ 324 (842)
+..
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 89
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.51 E-value=3.2e-14 Score=129.88 Aligned_cols=74 Identities=18% Similarity=0.292 Sum_probs=67.2
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
...+++||||||+.+++|+||+++|++||+|++|.+.+ .||||||+|++.+||++|++.|+|..++ +|+|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45679999999999999999999999999999999864 4899999999999999999999999876 7888
Q ss_pred eccc
Q 003170 321 MDVG 324 (842)
Q Consensus 321 ~r~~ 324 (842)
++..
T Consensus 119 a~~~ 122 (139)
T 1u6f_A 119 AASG 122 (139)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8664
No 90
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.51 E-value=4.2e-14 Score=127.08 Aligned_cols=82 Identities=22% Similarity=0.257 Sum_probs=70.7
Q ss_pred CCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 243 EDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 243 g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
++.........+++||||||+.++|++||+++|++||+|.+|.+.. ++|||||+|.+.++|++|++.|+|..+.
T Consensus 11 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 11 GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp ---CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 3334455667789999999999999999999999999999999864 3899999999999999999999999876
Q ss_pred ----EEEEeccc
Q 003170 317 ----RVKFMDVG 324 (842)
Q Consensus 317 ----RIrF~r~~ 324 (842)
+|+|+...
T Consensus 91 g~~l~v~~a~~~ 102 (126)
T 3ex7_B 91 GQPISVDWCFVR 102 (126)
T ss_dssp SSBCEEEESEES
T ss_pred CeEEEEEEecCC
Confidence 88888664
No 91
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-14 Score=126.02 Aligned_cols=71 Identities=25% Similarity=0.318 Sum_probs=61.7
Q ss_pred CCeEEecCCCCccCHHHHHHhccccC-CcceEEEe------cCCceEEEEecChHHHHHHHHHhcCC-cce----EEEEe
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNH-FSW----RVKFM 321 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfG-pIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~-~~~----RIrF~ 321 (842)
|+.|||+||+.++||+||+++|++|| .|.+|++. ++||||||+|.+.+||++|++.|++. .+. +|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 68999999999999999999999999 89999974 47899999999999999999998654 332 77777
Q ss_pred ccc
Q 003170 322 DVG 324 (842)
Q Consensus 322 r~~ 324 (842)
++.
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 653
No 92
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.50 E-value=3.2e-14 Score=127.00 Aligned_cols=72 Identities=21% Similarity=0.330 Sum_probs=65.5
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEecc
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 323 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~ 323 (842)
-...+++||||||+.+++++||++.|++||+|++|.+. ||||||+|.+.+||++|++.|+|..+. +|+|++.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 35678999999999999999999999999999999998 999999999999999999999999765 6676654
No 93
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.50 E-value=4e-14 Score=124.49 Aligned_cols=78 Identities=24% Similarity=0.273 Sum_probs=68.7
Q ss_pred ccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----
Q 003170 247 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW---- 316 (842)
Q Consensus 247 ~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~---- 316 (842)
.......+++||||||+.++++++|+++|++||+|++|.+.. .||||||+|.+.++|.+|++.|+|..+.
T Consensus 19 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 19 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp CBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 334456789999999999999999999999999999999864 4799999999999999999999999775
Q ss_pred EEEEeccc
Q 003170 317 RVKFMDVG 324 (842)
Q Consensus 317 RIrF~r~~ 324 (842)
+|+|++..
T Consensus 99 ~V~~a~~~ 106 (110)
T 1oo0_B 99 QVDWCFVK 106 (110)
T ss_dssp EEEESEES
T ss_pred EEEEcccC
Confidence 77777653
No 94
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.6e-14 Score=122.08 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=65.9
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEeccc
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 324 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~ 324 (842)
...++++|||||| ++|++||+++|++||+|.+|.+.+.||||||+|++.+||.+|++.|+|..+. +|+|++..
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3456899999996 9999999999999999999999999999999999999999999999999765 67776653
No 95
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.3e-14 Score=122.32 Aligned_cols=74 Identities=18% Similarity=0.206 Sum_probs=66.3
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
..++++||||||+.+++++||+++|++||+|++|++.. .||||||+|.+.+||++|++.|+|..+. +|+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 35679999999999999999999999999999999975 4599999999999999999999998765 77777
Q ss_pred ccc
Q 003170 322 DVG 324 (842)
Q Consensus 322 r~~ 324 (842)
++.
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 96
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.9e-14 Score=121.89 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=64.0
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcc-eEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEecc
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 323 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIe-sV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~ 323 (842)
...+++||||||+.+++++||+++|++||+|+ .+...+.||||||+|.+.+||.+|++.|+|..+. +|++++.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 34588999999999999999999999999996 3333468999999999999999999999999775 7777765
No 97
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.4e-14 Score=123.48 Aligned_cols=75 Identities=11% Similarity=0.136 Sum_probs=66.8
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcc--------
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFS-------- 315 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~-------- 315 (842)
......++||||||+.+++++||+++|++||.|.++.+.. +||||||+|.+.+||.+|++.|+|+.+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 4445779999999999999999999999999999999865 489999999999999999999999976
Q ss_pred ----eEEEEecc
Q 003170 316 ----WRVKFMDV 323 (842)
Q Consensus 316 ----~RIrF~r~ 323 (842)
.+|+|+++
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 26777765
No 98
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=2e-14 Score=123.34 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=70.7
Q ss_pred CCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEE-ecCCceEEEEecChHHHHHHHHHhcCCcce----E
Q 003170 243 EDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF-FPIKGFALVEYINIIDAIRAREYIRNHFSW----R 317 (842)
Q Consensus 243 g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~-~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----R 317 (842)
-+|..+....++++||||||+.+++++||+++|++||.|..+.. ..+||||||+|.+.+||.+|++.|+|..+. +
T Consensus 5 ~~p~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 5 EDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp SCTTTTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred cCccccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 35566667778999999999999999999999999999998822 247899999999999999999999998765 7
Q ss_pred EEEeccc
Q 003170 318 VKFMDVG 324 (842)
Q Consensus 318 IrF~r~~ 324 (842)
|+|++..
T Consensus 85 v~~a~~~ 91 (96)
T 1fjc_A 85 LYYTGEK 91 (96)
T ss_dssp EEECSSS
T ss_pred EEEcCCC
Confidence 7777654
No 99
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3.6e-14 Score=123.43 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=67.5
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
..++++||||||+.+++++||+++|++||+|++|.+.. .||||||+|.+.++|++|++.|+|..+. +|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45689999999999999999999999999999999854 5899999999999999999999999875 8888
Q ss_pred eccc
Q 003170 321 MDVG 324 (842)
Q Consensus 321 ~r~~ 324 (842)
++..
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 8754
No 100
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.50 E-value=2.6e-14 Score=119.97 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=61.6
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhcccc----C-------CcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRF----G-------PLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rf----G-------pIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
..++++||||||+.+++++||++.|++| | +|.++++.++||||||+|.+.+||.+|+ .|+|..+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4568999999999999999999999999 8 9999999999999999999999999999 99999765
No 101
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.49 E-value=3.7e-14 Score=123.91 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=65.8
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEeccc
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 324 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~ 324 (842)
..++++||||||+.++|++||+++|++||+|.+|.+. ||||||+|.+.+||.+|++.|+|..+. +|+|++..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 4678999999999999999999999999999999986 689999999999999999999999765 77887653
No 102
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.9e-14 Score=124.84 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=65.8
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
...+++||||||+.+++++||++.|++||+|.++.+.. +||||||+|.+.+||++|++.|+|..+. +|++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 45679999999999999999999999999999999874 3899999999999999999999998765 7777
Q ss_pred ecc
Q 003170 321 MDV 323 (842)
Q Consensus 321 ~r~ 323 (842)
++.
T Consensus 85 a~~ 87 (104)
T 1p1t_A 85 AAS 87 (104)
T ss_dssp TTC
T ss_pred CCC
Confidence 754
No 103
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=3e-14 Score=126.80 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=65.0
Q ss_pred CCCCeEEecCCCCccCHHHHH---HhccccCCcceEEEec---------CCceEEEEecChHHHHHHHHHhcCCcce---
Q 003170 252 SASKQLWLGSFGPEASEAHIR---FQIDRFGPLEHFFFFP---------IKGFALVEYINIIDAIRAREYIRNHFSW--- 316 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~---~~F~rfGpIesV~~~~---------~RGFAFVeF~~i~DA~~A~~~L~G~~~~--- 316 (842)
...++||||||+.+++|+||+ ++|++||+|.+|.+.+ +||||||+|++.+||.+|++.|+|..+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 357899999999999999999 9999999999999874 4489999999999999999999999775
Q ss_pred -EEEEeccc
Q 003170 317 -RVKFMDVG 324 (842)
Q Consensus 317 -RIrF~r~~ 324 (842)
+|+|+...
T Consensus 93 l~V~~a~~k 101 (111)
T 2cpi_A 93 LKASLGTTK 101 (111)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccc
Confidence 66766553
No 104
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.8e-14 Score=121.77 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=69.0
Q ss_pred cccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----E
Q 003170 248 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----R 317 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----R 317 (842)
..-..++++||||||+.+++++||+++|++||+|.+|.+.. +||||||+|.+.+||++|++.|+|..+. +
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556789999999999999999999999999999999864 6799999999999999999999998775 8
Q ss_pred EEEeccc
Q 003170 318 VKFMDVG 324 (842)
Q Consensus 318 IrF~r~~ 324 (842)
|++++..
T Consensus 89 v~~a~~~ 95 (105)
T 1x5u_A 89 VNKASAH 95 (105)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 8888664
No 105
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.8e-14 Score=124.16 Aligned_cols=74 Identities=22% Similarity=0.317 Sum_probs=66.1
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCC-cceEEEe-------cCCceEEEEecChHHHHHHHHHhc--CCcce----
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFF-------PIKGFALVEYINIIDAIRAREYIR--NHFSW---- 316 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGp-IesV~~~-------~~RGFAFVeF~~i~DA~~A~~~L~--G~~~~---- 316 (842)
..+.++||||||+.+++++||+++|++||+ |.+|.+. ++||||||+|.+.+||.+|++.|+ |..++
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 356899999999999999999999999999 9999987 689999999999999999999996 46554
Q ss_pred EEEEeccc
Q 003170 317 RVKFMDVG 324 (842)
Q Consensus 317 RIrF~r~~ 324 (842)
+|+++++.
T Consensus 85 ~V~~a~~~ 92 (109)
T 2dis_A 85 AVDWAEPE 92 (109)
T ss_dssp EEEESCSS
T ss_pred EEEEcCCC
Confidence 88888764
No 106
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.4e-14 Score=120.90 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=66.5
Q ss_pred cccCCCCCeEEecCCCCccCHHHHHHhcccc--CCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 248 MDIFSASKQLWLGSFGPEASEAHIRFQIDRF--GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rf--GpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
.+...++++||||||+.+++++||+++|++| |.|.+|.+ .||||||+|.+.+||.+|++.|+|..+. +|+|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3556789999999999999999999999999 88988876 4799999999999999999999999775 77777
Q ss_pred ccc
Q 003170 322 DVG 324 (842)
Q Consensus 322 r~~ 324 (842)
+..
T Consensus 87 ~~~ 89 (99)
T 2cpd_A 87 KPV 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 107
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.49 E-value=7.4e-14 Score=123.93 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=66.9
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEE
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 319 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIr 319 (842)
...++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.+||++|++.|+|..+. +|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345679999999999999999999999999999999864 4599999999999999999999999775 778
Q ss_pred Eeccc
Q 003170 320 FMDVG 324 (842)
Q Consensus 320 F~r~~ 324 (842)
|++..
T Consensus 101 ~a~~~ 105 (115)
T 2cpz_A 101 LKRSK 105 (115)
T ss_dssp CCCCS
T ss_pred EcCCC
Confidence 77653
No 108
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=7.3e-14 Score=130.19 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=64.8
Q ss_pred ccCCCCC--eEEecCCCCccCHHHHHHhccccCCcceEEEecCCce-EEEEecChHHHHHHHHHhcCCcce------EEE
Q 003170 249 DIFSASK--QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGF-ALVEYINIIDAIRAREYIRNHFSW------RVK 319 (842)
Q Consensus 249 ~v~s~Sr--~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGF-AFVeF~~i~DA~~A~~~L~G~~~~------RIr 319 (842)
|...+++ .||||||+..+|+++|+++|++||.|.+|++...+|| |||+|.+.+||++|++.|+|+.+. +|.
T Consensus 18 ~~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 18 DPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp CCCCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred CCCCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3334454 4679999999999999999999999999999765697 999999999999999999999762 677
Q ss_pred Eecc
Q 003170 320 FMDV 323 (842)
Q Consensus 320 F~r~ 323 (842)
|++.
T Consensus 98 ~Ak~ 101 (124)
T 2e5i_A 98 YARP 101 (124)
T ss_dssp CCSC
T ss_pred EecC
Confidence 7765
No 109
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=9.9e-14 Score=122.64 Aligned_cols=72 Identities=17% Similarity=0.142 Sum_probs=65.1
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce---------EEEEe
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW---------RVKFM 321 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~---------RIrF~ 321 (842)
....++||||||+.++|++||+++|++||+|.++.+... |||||+|++.+||++|++.|+|+.+. +|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 456899999999999999999999999999999999887 99999999999999999999998652 66666
Q ss_pred cc
Q 003170 322 DV 323 (842)
Q Consensus 322 r~ 323 (842)
..
T Consensus 91 ~~ 92 (108)
T 1x4c_A 91 GP 92 (108)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 110
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.49 E-value=2.5e-14 Score=119.95 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=57.7
Q ss_pred CCeEEecCCCCcc------CHHHHHHhccccCCcceEEEe----cCCceEEEEecChHHHHHHHHHhcCCcc
Q 003170 254 SKQLWLGSFGPEA------SEAHIRFQIDRFGPLEHFFFF----PIKGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 254 Sr~LwVGnL~~dv------tE~dL~~~F~rfGpIesV~~~----~~RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
++.||||||+.++ ++++|+++|++||+|.++.+. ++||||||+|.+.+||.+|++.|+|..+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 72 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 72 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCccc
Confidence 5789999999999 789999999999999999986 3689999999999999999999999864
No 111
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.49 E-value=9.3e-15 Score=135.77 Aligned_cols=120 Identities=15% Similarity=0.136 Sum_probs=88.1
Q ss_pred CCCCCCCccccccccCCCCCCCC----Ccccccccc-eeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccC
Q 003170 205 HFPGRSSSEGASNALLSPNHHLP----VPYASTTSQ-IVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFG 279 (842)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~p----~~~~g~~~~-~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfG 279 (842)
.||.|.+.+.|..++..++.... ..+.+.... ..+...............++||||||+.+++++||+++|++||
T Consensus 16 ~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 95 (158)
T 2kn4_A 16 TTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYG 95 (158)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHS
T ss_pred hHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 47888888999888865543211 111111111 1111122223344556689999999999999999999999999
Q ss_pred CcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEeccc
Q 003170 280 PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 324 (842)
Q Consensus 280 pIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~ 324 (842)
.|++|.+.+ +||||||+|.+.++|++|++.|+|..+. +|+|++..
T Consensus 96 ~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 96 RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 999999854 7899999999999999999999998765 77887764
No 112
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.49 E-value=9.4e-14 Score=125.02 Aligned_cols=74 Identities=18% Similarity=0.133 Sum_probs=67.1
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
...++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|++.+||++|++.|+|..+. +|++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999965 6899999999999999999999998765 6777
Q ss_pred ecc
Q 003170 321 MDV 323 (842)
Q Consensus 321 ~r~ 323 (842)
+..
T Consensus 111 a~~ 113 (124)
T 2kt5_A 111 VAS 113 (124)
T ss_dssp ECC
T ss_pred eCC
Confidence 654
No 113
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.48 E-value=3.7e-14 Score=126.15 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=64.0
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEE
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 319 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIr 319 (842)
....+++||||||+.+++++||++.|++||+|.++.+.+ .||||||+|.+.+||++|++.|+|..+. +|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345689999999999999999999999999999999864 5899999999999999999999998764 555
Q ss_pred Ee
Q 003170 320 FM 321 (842)
Q Consensus 320 F~ 321 (842)
|+
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 114
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.48 E-value=2.6e-14 Score=122.08 Aligned_cols=71 Identities=10% Similarity=-0.061 Sum_probs=61.4
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
..+++||||||+.+++++||++.|++||+|.++.+. +.||||||+|.+.+||++|++.|+|+.+. +|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 346899999999999999999999999999977764 36899999999999999999999999765 55554
Q ss_pred c
Q 003170 322 D 322 (842)
Q Consensus 322 r 322 (842)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 115
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.48 E-value=5.1e-14 Score=124.51 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=60.8
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCC--cceEEEe------cCCceEEEEecChHHHHHHHHHhcCCc----c----e
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGP--LEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHF----S----W 316 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGp--IesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~----~----~ 316 (842)
.-++||||||++++||++|+++|++||. +.+|++. ++||||||+|.+.+||.+|++.|+|.. + .
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4578999999999999999999999996 5688874 378999999999999999999999973 2 2
Q ss_pred EEEEecc
Q 003170 317 RVKFMDV 323 (842)
Q Consensus 317 RIrF~r~ 323 (842)
+|+|++.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 6666653
No 116
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.48 E-value=1.2e-14 Score=141.64 Aligned_cols=113 Identities=14% Similarity=0.083 Sum_probs=89.3
Q ss_pred CCCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcce
Q 003170 204 NHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH 283 (842)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIes 283 (842)
-.|+.|++.|.|..||..+|+..- .|.. ++..............+++||||||+.++|++||+++|++||.|++
T Consensus 59 ~afV~F~~~~~A~~Ai~~~~~~~~---~g~~---i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~ 132 (213)
T 4f02_A 59 YAYVNFQQPADAERALDTMNFDVI---KGKP---VRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 132 (213)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEE---TTEE---CEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred cccceeCCHHHHHHHHHHhhhhhc---CCcc---cccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEE
Confidence 359999999999999998886542 2322 2222222233334456789999999999999999999999999999
Q ss_pred EEEec----CCceEEEEecChHHHHHHHHHhcCCcce----EEEEec
Q 003170 284 FFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 322 (842)
Q Consensus 284 V~~~~----~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r 322 (842)
+.+.+ +||||||+|.+.+||.+|++.|+|+.+. +|++++
T Consensus 133 ~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 133 CKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp EEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 99864 6899999999999999999999999765 555554
No 117
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.48 E-value=6.5e-14 Score=126.80 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=63.3
Q ss_pred ccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 247 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 247 ~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
..+-..++++||||||+.+++++||+++|++||+|++|.+.+ .||||||+|.+.+||++|++.|+|..+.
T Consensus 56 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 56 SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 344556799999999999999999999999999999999854 6899999999999999999999998654
No 118
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.47 E-value=7.7e-14 Score=124.31 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=66.3
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EE
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 318 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RI 318 (842)
.-..++++||||||+.++++++|++.|++||+|.+|.+.+ +||||||+|.+.+||.+|++.|+|..+. +|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456789999999999999999999999999999999863 5799999999999999999999998765 66
Q ss_pred EEecc
Q 003170 319 KFMDV 323 (842)
Q Consensus 319 rF~r~ 323 (842)
++++.
T Consensus 101 ~~a~~ 105 (108)
T 2jrs_A 101 GHVTE 105 (108)
T ss_dssp ECSCS
T ss_pred EEccc
Confidence 66543
No 119
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.47 E-value=2.5e-14 Score=131.73 Aligned_cols=105 Identities=17% Similarity=0.273 Sum_probs=83.1
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcc
Q 003170 203 RNHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLE 282 (842)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIe 282 (842)
.-.|+.|++.|.|..++ .+|... ..|..-.+-| . ........+++||||||+.+++++||++.|++||+|+
T Consensus 52 g~afV~f~~~~~A~~A~-~~~~~~---~~g~~i~v~~---~--~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 122 (172)
T 2g4b_A 52 NFAFLEFRSVDETTQAM-AFDGII---FQGQSLKIRR---P--HDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK 122 (172)
T ss_dssp TEEEEEESSHHHHHHHG-GGTTCE---ETTEECEEEC---C--SSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred CEEEEEeCCHHHHHHHH-HhCCcE---ecCceeeecC---C--cccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce
Confidence 44699999999999999 777643 1233212212 0 1112234579999999999999999999999999999
Q ss_pred eEEEecC------CceEEEEecChHHHHHHHHHhcCCcce
Q 003170 283 HFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 283 sV~~~~~------RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
++.+.+. ||||||+|.+.+||.+|++.|+|..+.
T Consensus 123 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (172)
T 2g4b_A 123 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 162 (172)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET
T ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC
Confidence 9998654 799999999999999999999998765
No 120
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.5e-14 Score=122.71 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=65.9
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccc-cCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCc-ce----EEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDR-FGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHF-SW----RVK 319 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~r-fGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~-~~----RIr 319 (842)
..++++||||||+.++|++||+++|++ ||+|.+|.+.. +||||||+|.+.+||.+|++.|+|.. +. +|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 457899999999999999999999999 99999999875 58999999999999999999999987 65 666
Q ss_pred Eecc
Q 003170 320 FMDV 323 (842)
Q Consensus 320 F~r~ 323 (842)
++..
T Consensus 86 ~a~~ 89 (104)
T 2dhg_A 86 VAIP 89 (104)
T ss_dssp BCCC
T ss_pred EccC
Confidence 6654
No 121
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=120.76 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=65.4
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-------CCceEEEEecChHHHHHHHHHhcCCcce----EE
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 318 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RI 318 (842)
...++++||||||+.+++++||+++|++|| |.+|.+.. .||||||+|.+.+||++|+ .|+|..+. +|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 346789999999999999999999999999 99999853 4899999999999999999 99999775 78
Q ss_pred EEeccc
Q 003170 319 KFMDVG 324 (842)
Q Consensus 319 rF~r~~ 324 (842)
++++..
T Consensus 89 ~~a~~~ 94 (104)
T 1wi8_A 89 DVADQA 94 (104)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 888764
No 122
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.47 E-value=6e-14 Score=150.53 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=64.2
Q ss_pred cccccCCCCCeEEecCC--CCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcc
Q 003170 246 AAMDIFSASKQLWLGSF--GPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 246 ~~~~v~s~Sr~LwVGnL--~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
...-...++++|||||+ +.++||+||+++|++||.|++|++.++||||||+|++.+||++|+++|||+.+
T Consensus 10 ~v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 10 GIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp TCCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 44455789999999995 67899999999999999999999999999999999999999999999999864
No 123
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.46 E-value=4.2e-14 Score=134.72 Aligned_cols=117 Identities=16% Similarity=0.106 Sum_probs=88.8
Q ss_pred CCCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCcc-------ccccCCCCCeEEecCCCCccCHHHHHHhcc
Q 003170 204 NHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPA-------AMDIFSASKQLWLGSFGPEASEAHIRFQID 276 (842)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~-------~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~ 276 (842)
-.||.|++.|.|..+++.||...= -|..-.+-| .....- .......+++|||+||+.+++++||+++|+
T Consensus 72 ~afV~f~~~~~A~~A~~~l~~~~~---~g~~l~v~~-~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 147 (216)
T 2qfj_A 72 FAFVEYEVPEAAQLALEQMNSVML---GGRNIKVGR-PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE 147 (216)
T ss_dssp EEEEEESSHHHHHHHHHHHSSCCC---C-CCCEEEC-CSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHT
T ss_pred eEEEEeCCHHHHHHHHHHccCCee---CCeeEEEec-CCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHh
Confidence 359999999999999997776431 122111111 011000 012335679999999999999999999999
Q ss_pred ccCCcceEEEecC------CceEEEEecChHHHHHHHHHhcCCcce----EEEEeccc
Q 003170 277 RFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 324 (842)
Q Consensus 277 rfGpIesV~~~~~------RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~ 324 (842)
+||.|++|.+.+. +|||||+|.+.+||.+|++.|+|..+. +|+|+...
T Consensus 148 ~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 148 AFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp TSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred ccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 9999999999754 899999999999999999999999775 77887653
No 124
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.46 E-value=4.6e-14 Score=118.93 Aligned_cols=70 Identities=13% Similarity=0.232 Sum_probs=63.2
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEec
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 322 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r 322 (842)
.+++||||||+.+++++||++.|++||+|.++.+.. +||||||+|.+.++|.+|+ .|+|..+. +|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999864 4899999999999999999 99999765 666665
Q ss_pred c
Q 003170 323 V 323 (842)
Q Consensus 323 ~ 323 (842)
.
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 125
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.46 E-value=8.4e-14 Score=118.70 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=64.7
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEecc
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 323 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~ 323 (842)
..+++||||||+.+++|+||++.|++| .|.++.+.++||||||+|.+.+||++|++.|+|..+. +|+++..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 357899999999999999999999999 9999999899999999999999999999999999765 6666543
No 126
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.46 E-value=5.4e-14 Score=123.27 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=59.4
Q ss_pred CCCCeEEecCCCC------ccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcc
Q 003170 252 SASKQLWLGSFGP------EASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 252 s~Sr~LwVGnL~~------dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
..++.||||||+. ++++++|+++|++||+|.+|.+. ++||||||+|.+.+||.+|++.|+|+.+
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 79 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL 79 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc
Confidence 4578999999999 99999999999999999999984 3789999999999999999999999864
No 127
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.46 E-value=1.1e-13 Score=130.54 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=65.8
Q ss_pred ccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-CCce-EEEEecChHHHHHHHHHhcCCcc----e--EE
Q 003170 247 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGF-ALVEYINIIDAIRAREYIRNHFS----W--RV 318 (842)
Q Consensus 247 ~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-~RGF-AFVeF~~i~DA~~A~~~L~G~~~----~--RI 318 (842)
++.-.+.--.||||||+..+||++|+++|++||+|.+|++.. .||| |||+|++.+||++|++.|||+.+ | ||
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 444445556778999999999999999999999999999864 7899 99999999999999999999987 3 88
Q ss_pred EEecc
Q 003170 319 KFMDV 323 (842)
Q Consensus 319 rF~r~ 323 (842)
+|++.
T Consensus 101 ~~ak~ 105 (130)
T 3zzy_A 101 DFSKL 105 (130)
T ss_dssp EECSC
T ss_pred EecCC
Confidence 88876
No 128
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.46 E-value=9.1e-14 Score=128.08 Aligned_cols=75 Identities=23% Similarity=0.228 Sum_probs=66.6
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce----EE
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RV 318 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RI 318 (842)
.-..++++||||||+.+++++||+++|++||+|.+|++. +.||||||+|++.+||++|++.|+|..+. +|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999999999999999999999999999986 46899999999999999999999998765 66
Q ss_pred EEecc
Q 003170 319 KFMDV 323 (842)
Q Consensus 319 rF~r~ 323 (842)
+|++.
T Consensus 121 ~~a~~ 125 (129)
T 2kxn_B 121 DFSIT 125 (129)
T ss_dssp SCCSS
T ss_pred EEecC
Confidence 65543
No 129
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.46 E-value=8.6e-14 Score=136.00 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=65.9
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec--CCceEEEEecChHHHHHHHHHhcCCcc----e--EEEEec
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFS----W--RVKFMD 322 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~--~RGFAFVeF~~i~DA~~A~~~L~G~~~----~--RIrF~r 322 (842)
.+....||||||+.++||++|+++|++||.|++|+++. .||||||+|++.+||++|++.|+|+.+ + ||+|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 45556799999999999999999999999999999863 578999999999999999999999987 3 788887
Q ss_pred c
Q 003170 323 V 323 (842)
Q Consensus 323 ~ 323 (842)
.
T Consensus 123 ~ 123 (164)
T 1sjr_A 123 L 123 (164)
T ss_dssp S
T ss_pred C
Confidence 5
No 130
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.46 E-value=7.7e-14 Score=127.03 Aligned_cols=71 Identities=11% Similarity=-0.032 Sum_probs=63.7
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccC-CcceEEEe--cCCceEEEEecChHHHHHHHHHhcCCcce----EEEEec
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFF--PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 322 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfG-pIesV~~~--~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r 322 (842)
...++||||||+.+++++||++.|++|| .|..+.+. .+||||||+|++.+||++|++.|+|..+. +|++++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4568999999999999999999999999 89999985 58999999999999999999999998775 555554
No 131
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.45 E-value=5e-14 Score=120.54 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=57.9
Q ss_pred CeEEecCCCCccCHHHHHHhccccC--CcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEec
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFG--PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 322 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfG--pIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r 322 (842)
.+||||||+.++||+||+++|++|| .|.++++.. +||||||+|.+.+||++|++.|+|+.+. +|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999853 6899999999999999999999998765 555444
Q ss_pred c
Q 003170 323 V 323 (842)
Q Consensus 323 ~ 323 (842)
+
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 132
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.45 E-value=7.5e-14 Score=129.30 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=69.8
Q ss_pred CCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceE
Q 003170 205 HFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHF 284 (842)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV 284 (842)
||-..+.+..+-.++.+|++..-.- .|..+ .+.+ ..-..++++||||||+.++|++||+++|++||+|.+|
T Consensus 7 ~~~~~~~~~~~~~a~~~~~g~~~~g-~~~~~------~~~~--~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v 77 (135)
T 2lea_A 7 HHHHSSGLVPRGSHMASMTGGQQMG-RGSMS------YGRP--PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDV 77 (135)
T ss_dssp -----------------------------CC------SCCS--CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEE
T ss_pred ccccccCCCchhhhhhhccCCCCCC-CCCCC------cCCC--CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE
Confidence 4666677777788888887764311 11111 2222 3344568899999999999999999999999999999
Q ss_pred EEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEeccc
Q 003170 285 FFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 324 (842)
Q Consensus 285 ~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~ 324 (842)
.+.. +||||||+|++.+||++|++.|+|..+. +|++++..
T Consensus 78 ~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 78 YIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp ECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred EEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9853 6899999999999999999999999876 88888764
No 133
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.45 E-value=3.6e-14 Score=129.05 Aligned_cols=105 Identities=11% Similarity=0.160 Sum_probs=82.9
Q ss_pred CCCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcce
Q 003170 204 NHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH 283 (842)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIes 283 (842)
-.|+.|++.|.|..++..+|+..- .|..-.+-| ..+ .......++|||+||+.++++++|+++|++||+|++
T Consensus 46 ~afV~f~~~~~A~~a~~~l~~~~~---~g~~l~v~~---~~~--~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 117 (167)
T 1fxl_A 46 YGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVSY---ARP--SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 117 (167)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEE---TTEECEEEE---CCC--CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred EEEEEECCHHHHHHHHHHcCCCcc---CCceEEEEe---cCC--CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeE
Confidence 359999999999999988776321 232222222 111 112346789999999999999999999999999999
Q ss_pred EEEec------CCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 284 FFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 284 V~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
+.+.+ ++|||||+|.+.+||.+|++.|+|+.+.
T Consensus 118 ~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 118 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 99865 3799999999999999999999998653
No 134
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.44 E-value=2.2e-13 Score=127.06 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=68.4
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EE
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 318 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RI 318 (842)
....++++||||||+.++||+||+++|++||+|.+|.+.. .||||||+|++.+||++|++.|+|..+. +|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4456789999999999999999999999999999999853 5799999999999999999999999775 88
Q ss_pred EEeccc
Q 003170 319 KFMDVG 324 (842)
Q Consensus 319 rF~r~~ 324 (842)
++++..
T Consensus 114 ~~a~~~ 119 (156)
T 1h2v_Z 114 DWDAGF 119 (156)
T ss_dssp EEESCC
T ss_pred EECCCC
Confidence 888653
No 135
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.2e-13 Score=118.79 Aligned_cols=71 Identities=10% Similarity=-0.043 Sum_probs=62.1
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
...++||||||+.+++++||+++|++||+|.++.+. ++||||||+|.+.+||++|++.|+|..+. +|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456899999999999999999999999999866553 25899999999999999999999998765 66665
Q ss_pred c
Q 003170 322 D 322 (842)
Q Consensus 322 r 322 (842)
.
T Consensus 93 ~ 93 (98)
T 2cqp_A 93 S 93 (98)
T ss_dssp S
T ss_pred C
Confidence 4
No 136
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.2e-13 Score=120.04 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=66.5
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EE
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 318 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RI 318 (842)
.-..+.++||||||+.+++|+||+++|++||+|++|++.+ .||||||+|++.+||++|++.|+| .+. +|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3456789999999999999999999999999999999864 579999999999999999999998 443 88
Q ss_pred EEeccc
Q 003170 319 KFMDVG 324 (842)
Q Consensus 319 rF~r~~ 324 (842)
+++...
T Consensus 91 ~~a~~~ 96 (116)
T 2cqd_A 91 NLAYLG 96 (116)
T ss_dssp EESTTT
T ss_pred EEcccC
Confidence 888553
No 137
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=2.3e-13 Score=118.63 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=66.0
Q ss_pred cccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----E
Q 003170 248 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----R 317 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----R 317 (842)
.....++++||||||+.+++++||+++|++|| |.+|.+.. .||||||+|++.+||++|+ .|+|..+. +
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34456789999999999999999999999998 99999864 4799999999999999999 99998765 7
Q ss_pred EEEeccc
Q 003170 318 VKFMDVG 324 (842)
Q Consensus 318 IrF~r~~ 324 (842)
|++++..
T Consensus 87 V~~a~~~ 93 (103)
T 2dng_A 87 VDIAEGR 93 (103)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 8887654
No 138
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.44 E-value=4.8e-14 Score=132.63 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=88.9
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCcccccccceeeeccCC---------------ccccccCCCCCeEEecCCCCccC
Q 003170 203 RNHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDED---------------PAAMDIFSASKQLWLGSFGPEAS 267 (842)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~---------------~~~~~v~s~Sr~LwVGnL~~dvt 267 (842)
.-.||.|++.|.|..++ +||+.. ..|..-.+-|.-+-. .........+++||||||+.+++
T Consensus 52 g~afV~F~~~~~A~~Al-~l~g~~---~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 127 (198)
T 2yh0_A 52 NFAFLEFRSVDETTQAM-AFDGII---FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLN 127 (198)
T ss_dssp TEEEEEESCSHHHHHHG-GGTTEE---ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCC
T ss_pred CEEEEEeCCHHHHHHHH-HhcCCE---EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCC
Confidence 34699999999999999 777643 122211111111100 01112235789999999999999
Q ss_pred HHHHHHhccccCCcceEEEecC------CceEEEEecChHHHHHHHHHhcCCcce----EEEEeccc
Q 003170 268 EAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 324 (842)
Q Consensus 268 E~dL~~~F~rfGpIesV~~~~~------RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~ 324 (842)
++||+++|++||+|.++.+.+. +|||||+|.+.+||.+|++.|+|..+. +|+|+++.
T Consensus 128 ~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 128 DDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp HHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred HHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9999999999999999998754 899999999999999999999999775 77777653
No 139
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=2.4e-13 Score=117.82 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=67.0
Q ss_pred CccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceE-----EEecCCceEEEEecChHHHHHHHHHhcCCcce--
Q 003170 244 DPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHF-----FFFPIKGFALVEYINIIDAIRAREYIRNHFSW-- 316 (842)
Q Consensus 244 ~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV-----~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~-- 316 (842)
+|.......++++||||||+.++|++||+++|++||.|.+. ...++||||||+|++.+||.+|++ |+|..+.
T Consensus 7 ~p~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~ 85 (101)
T 1fj7_A 7 DPVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN 85 (101)
T ss_dssp CSCCSTTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB
T ss_pred CCCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc
Confidence 44444555678999999999999999999999999988772 224589999999999999999999 9999765
Q ss_pred --EEEEeccc
Q 003170 317 --RVKFMDVG 324 (842)
Q Consensus 317 --RIrF~r~~ 324 (842)
+|++++..
T Consensus 86 ~l~V~~a~~~ 95 (101)
T 1fj7_A 86 EIKLEKPKGR 95 (101)
T ss_dssp CCEEECCSCC
T ss_pred EEEEEEcCCC
Confidence 77777653
No 140
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=121.28 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=61.3
Q ss_pred ccCCCCCeEEecCCCCcc------CHHHHHHhccccCCcceEEEe----cCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 249 DIFSASKQLWLGSFGPEA------SEAHIRFQIDRFGPLEHFFFF----PIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dv------tE~dL~~~F~rfGpIesV~~~----~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
.....+++||||||+.++ |+++|+++|++||+|.+|.+. ++||||||+|.+.++|.+|++.|+|..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 344568999999999999 889999999999999999986 47899999999999999999999998653
No 141
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.44 E-value=2.2e-13 Score=124.45 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=66.6
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEeccc
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 324 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~ 324 (842)
...++++|||||| ++|++||+++|++||+|.+|.+.+.||||||+|++.++|.+|++.|+|..+. +|+|++..
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 3457899999996 7999999999999999999999999999999999999999999999999775 78887653
No 142
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.43 E-value=1.9e-13 Score=129.80 Aligned_cols=117 Identities=23% Similarity=0.262 Sum_probs=89.1
Q ss_pred CCCCCCCCccccccccCCCCCCCCCcccccccceeeecc------------------------------CCccccccCCC
Q 003170 204 NHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFD------------------------------EDPAAMDIFSA 253 (842)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~------------------------------g~~~~~~v~s~ 253 (842)
-.|+.|++.|.|..++..||+..= .|..-.+-|.-. +......+..+
T Consensus 43 ~afV~f~~~~~a~~A~~~l~~~~~---~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 119 (198)
T 1qm9_A 43 NALVQMADGNQAQLAMSHLNGHKL---HGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPP 119 (198)
T ss_dssp CCEEECTTTHHHHHHHHHHTTCCC---SSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCC
T ss_pred EEEEEECCHHHHHHHHHHhCCCee---cCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCC
Confidence 479999999999999987776431 122111111100 00011234567
Q ss_pred CCeEEecCCCCccCHHHHHHhccccC-CcceEEEec-CCceEEEEecChHHHHHHHHHhcCCcce-----EEEEecc
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW-----RVKFMDV 323 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfG-pIesV~~~~-~RGFAFVeF~~i~DA~~A~~~L~G~~~~-----RIrF~r~ 323 (842)
+++|||+||+.++++++|+++|++|| .|.+|.+.+ .||||||+|.+.+||.+|++.|+|+.+. +|+|+++
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 99999999999999999999999999 999999965 8999999999999999999999998754 6677654
No 143
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.2e-13 Score=122.39 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=64.2
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
...+++||||||+.+++++||+++|++||.|.+|.+. ..||||||+|.+.++|.+|+ .|+|..+. +|++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 3457899999999999999999999999999999985 47899999999999999999 99998765 6666
Q ss_pred ecc
Q 003170 321 MDV 323 (842)
Q Consensus 321 ~r~ 323 (842)
++.
T Consensus 101 a~~ 103 (114)
T 2cq4_A 101 SQA 103 (114)
T ss_dssp HHH
T ss_pred cCC
Confidence 654
No 144
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.6e-13 Score=122.40 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=59.4
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
....++||||||+.++|+++|++.|++||+|.+|.+.+ +||||||+|.+.++|.+|++ |+|..+.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~ 77 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK 77 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC
Confidence 34578999999999999999999999999999999965 78999999999999999999 8987653
No 145
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.43 E-value=6.3e-14 Score=128.25 Aligned_cols=103 Identities=14% Similarity=0.173 Sum_probs=82.4
Q ss_pred CCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceE
Q 003170 205 HFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHF 284 (842)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV 284 (842)
.|+.|++.|.|+.++..+|+..= .|..-.+-| ..+ .....++++|||+||+.++++++|+++|++||.|+++
T Consensus 48 afV~f~~~~~A~~a~~~l~~~~~---~g~~l~v~~---~~~--~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~ 119 (168)
T 1b7f_A 48 AFVDFTSEMDSQRAIKVLNGITV---RNKRLKVSY---ARP--GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQK 119 (168)
T ss_dssp EEEEESSHHHHHHHHHHHTTCEE---TTEECEEEE---CCC--CSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEE
T ss_pred EEEEECCHHHHHHHHHhcCCCEe---CCcEEEEEe---cCC--CcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEE
Confidence 69999999999999987775431 232222222 111 1123568999999999999999999999999999999
Q ss_pred EEecC------CceEEEEecChHHHHHHHHHhcCCcc
Q 003170 285 FFFPI------KGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 285 ~~~~~------RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
.+.+. +|||||+|.+.+||.+|++.|+|+.+
T Consensus 120 ~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 120 NILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP 156 (168)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred EEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe
Confidence 98753 59999999999999999999999865
No 146
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2e-13 Score=120.56 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=64.8
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcc----eEEEe--cCCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLE----HFFFF--PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIe----sV~~~--~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
..++++||||||+.++|++||+++|++||.|+ .+.+. .+||||||+|.+.++|.+|++.|+|..+. +|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35789999999999999999999999999995 44433 47899999999999999999999998775 8888
Q ss_pred eccc
Q 003170 321 MDVG 324 (842)
Q Consensus 321 ~r~~ 324 (842)
++..
T Consensus 102 a~~~ 105 (115)
T 2cpx_A 102 GKNK 105 (115)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8764
No 147
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.3e-13 Score=116.94 Aligned_cols=75 Identities=19% Similarity=0.128 Sum_probs=64.0
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEE--ecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEecc
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF--FPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 323 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~--~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~ 323 (842)
...++++||||||+.+++++||+++|++||.|.-++. .+.||||||+|.+.+||++|++.|+|..+. +|+|++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 4567999999999999999999999999999843222 237999999999999999999999998765 7777765
Q ss_pred c
Q 003170 324 G 324 (842)
Q Consensus 324 ~ 324 (842)
.
T Consensus 91 ~ 91 (101)
T 2fc9_A 91 R 91 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 148
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.41 E-value=1.8e-13 Score=126.00 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=64.7
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceE--------E---EecCCceEEEEecChHHHHHHHHHhcCCcce---
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHF--------F---FFPIKGFALVEYINIIDAIRAREYIRNHFSW--- 316 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV--------~---~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~--- 316 (842)
..++++||||||+.++|+++|+++|++||.|.++ . ..+.||||||+|.+.++|.+|++.|+|..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4678999999999999999999999999999874 2 2358999999999999999999999999765
Q ss_pred -EEEEecc
Q 003170 317 -RVKFMDV 323 (842)
Q Consensus 317 -RIrF~r~ 323 (842)
+|+|++.
T Consensus 122 l~V~~a~~ 129 (143)
T 3egn_A 122 MVVQFARS 129 (143)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 7777765
No 149
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.41 E-value=2.3e-13 Score=136.19 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=65.0
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCC-ceEEEEecChHHHHHHHHHhcCCcce-----EEEEec
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK-GFALVEYINIIDAIRAREYIRNHFSW-----RVKFMD 322 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~R-GFAFVeF~~i~DA~~A~~~L~G~~~~-----RIrF~r 322 (842)
..++++||||||+.+++++||+++|++||.|.+|.+.+.+ |||||+|.+.+||.+|++.|+|..+. +|+|++
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3467899999999999999999999999999999999866 99999999999999999999998764 556553
No 150
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1.9e-13 Score=119.25 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=65.4
Q ss_pred ccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----
Q 003170 247 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW---- 316 (842)
Q Consensus 247 ~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~---- 316 (842)
.+.-..+.++||||||+.+++++||+++|++||+|++|.+.+ .||||||+|++.+||.+|++. +|..+.
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 344567889999999999999999999999999999999865 469999999999999999999 888765
Q ss_pred EEEEecc
Q 003170 317 RVKFMDV 323 (842)
Q Consensus 317 RIrF~r~ 323 (842)
+|+++.+
T Consensus 88 ~V~~a~~ 94 (105)
T 2dh8_A 88 DPKPCTP 94 (105)
T ss_dssp BCCCSCC
T ss_pred EEEEccC
Confidence 4455443
No 151
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.41 E-value=1.2e-13 Score=117.13 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=60.8
Q ss_pred CeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEecc
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 323 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~ 323 (842)
++||||||+.+++++||++.|++||+|+++.+.+ +||||||+|.+.+ |.+|++.|+|..+. +|+++..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 6899999999999999999999999999999853 5899999999999 99999999999765 7777654
No 152
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.40 E-value=1.9e-13 Score=122.46 Aligned_cols=72 Identities=11% Similarity=0.192 Sum_probs=64.6
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
..+++||||||+.++|++||++.|++||+|++|.+.. +||||||+|.+.++|.+|+ .|+|..+. +|+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3478999999999999999999999999999999864 5899999999999999999 89999775 77777
Q ss_pred ccc
Q 003170 322 DVG 324 (842)
Q Consensus 322 r~~ 324 (842)
+..
T Consensus 113 ~~~ 115 (124)
T 2jwn_A 113 RTN 115 (124)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 153
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.40 E-value=1.8e-13 Score=119.44 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=60.2
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-------CCceEEEEecChHHHHHHHHHhcCCcce----E
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW----R 317 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----R 317 (842)
......++||||||+.+++++||++.|++|| |.+|.+.. +||||||+|.+.+||.+|+ .|+|..+. +
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3456789999999999999999999999999 99999854 4799999999999999999 99998764 5
Q ss_pred EEEecc
Q 003170 318 VKFMDV 323 (842)
Q Consensus 318 IrF~r~ 323 (842)
|++++.
T Consensus 92 V~~a~~ 97 (100)
T 2j76_E 92 VDVADQ 97 (100)
T ss_dssp CEECCC
T ss_pred EEeccC
Confidence 565543
No 154
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.40 E-value=5.6e-13 Score=112.36 Aligned_cols=64 Identities=11% Similarity=0.259 Sum_probs=57.1
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCc
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF 314 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~ 314 (842)
-....++||||||+.++++++|++.|++||+|.++.+.. +||||||+|.+.++|.+|++. +|+.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~ 76 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHR 76 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCE
Confidence 346789999999999999999999999999999999864 489999999999999999976 4443
No 155
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.40 E-value=3.6e-13 Score=128.32 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=62.5
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccC--CcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEE
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFG--PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 319 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfG--pIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIr 319 (842)
...++||||||+.++||+||+++|++|| .|.+|++.. +||||||+|.+.+||.+|++.|+|..+. +|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4678999999999999999999999999 999999853 6899999999999999999999999765 666
Q ss_pred Eecc
Q 003170 320 FMDV 323 (842)
Q Consensus 320 F~r~ 323 (842)
++..
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 6654
No 156
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.40 E-value=2.1e-13 Score=124.64 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=64.1
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcce--EEEec------CCceEEEEecChHHHHHHHHHhcCC----cce--
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--FFFFP------IKGFALVEYINIIDAIRAREYIRNH----FSW-- 316 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIes--V~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~----~~~-- 316 (842)
..++++||||||+.++||+||+++|++||.|.. |++.+ +||||||+|.+. ||.+|++.|+|. .+.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356899999999999999999999999999976 88753 679999999999 999999999998 654
Q ss_pred --EEEEecc
Q 003170 317 --RVKFMDV 323 (842)
Q Consensus 317 --RIrF~r~ 323 (842)
+|+|++.
T Consensus 99 ~l~V~~a~~ 107 (131)
T 2m2b_A 99 TINVEFAKG 107 (131)
T ss_dssp CCCCEECCC
T ss_pred EEEEEECCC
Confidence 7788765
No 157
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=3.3e-13 Score=110.88 Aligned_cols=60 Identities=15% Similarity=0.362 Sum_probs=55.0
Q ss_pred CeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcc
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
++||||||+.+++++||++.|++||+|.++.+.+ +||||||+|.+.+||++|++.|+ ..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~ 66 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL 66 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc
Confidence 5799999999999999999999999999999864 47999999999999999999888 543
No 158
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.39 E-value=3e-13 Score=121.50 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=58.6
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
...++||||||+.+++++||+++|++||+|.++.+... |||||+|++.+||++|++.|+|+.+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~ 77 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFR 77 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35789999999999999999999999999999999877 99999999999999999999998764
No 159
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.39 E-value=2.5e-13 Score=133.76 Aligned_cols=117 Identities=23% Similarity=0.262 Sum_probs=88.8
Q ss_pred CCCCCCCCccccccccCCCCCCCCCcccccccceeeecc------------------------------CCccccccCCC
Q 003170 204 NHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFD------------------------------EDPAAMDIFSA 253 (842)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~------------------------------g~~~~~~v~s~ 253 (842)
-.||.|++.|.|..+++.||+..= -|..-.+-|.-. +.....++..+
T Consensus 74 ~afV~F~~~~~A~~Ai~~l~g~~~---~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (229)
T 2adc_A 74 NALVQMADGNQAQLAMSHLNGHKL---HGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPP 150 (229)
T ss_dssp CEEEEESCHHHHHHHHHHHTTCBC---SSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCS
T ss_pred EEEEEECCHHHHHHHHHHhCCCeE---CCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCC
Confidence 379999999999999987776431 121111111000 00011234566
Q ss_pred CCeEEecCCCCccCHHHHHHhccccC-CcceEEEec-CCceEEEEecChHHHHHHHHHhcCCcce-----EEEEecc
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW-----RVKFMDV 323 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfG-pIesV~~~~-~RGFAFVeF~~i~DA~~A~~~L~G~~~~-----RIrF~r~ 323 (842)
+++|||+||+.++++++|+++|++|| .|.+|.+.+ .||||||+|.+.+||.+|++.|+|..+. +|.|+++
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 89999999999999999999999999 999999965 9999999999999999999999998754 6777664
No 160
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5.6e-13 Score=119.10 Aligned_cols=68 Identities=15% Similarity=0.027 Sum_probs=61.5
Q ss_pred cccCCCCCeEEecCCCCccCHHHHHHhccccCCc-ceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 248 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPL-EHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpI-esV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
.+...+.++||||||+.++||+||++.|++||.| .+|.+.. +||||||+|.+.+||.+|++. +|+.+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~ 82 (114)
T 2cpy_A 9 GDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN 82 (114)
T ss_dssp CSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET
T ss_pred CCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC
Confidence 4566788999999999999999999999999999 8999853 799999999999999999988 987654
No 161
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.39 E-value=4.3e-13 Score=137.66 Aligned_cols=65 Identities=23% Similarity=0.367 Sum_probs=62.5
Q ss_pred CCCCCeEEecCCCCcc---------CHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcc
Q 003170 251 FSASKQLWLGSFGPEA---------SEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dv---------tE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
...+++||||||+.++ +|++|+++|++||+|++|++.++||||||.|.+.++|+.|+++|+|+.+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4578999999999998 8999999999999999999999999999999999999999999999988
No 162
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=7.3e-13 Score=115.18 Aligned_cols=75 Identities=13% Similarity=0.171 Sum_probs=62.8
Q ss_pred cccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHH---hcCCcceEE
Q 003170 248 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREY---IRNHFSWRV 318 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~---L~G~~~~RI 318 (842)
.....++++||||||+.+++++||+++|++||+|.+|.+.. +||||||+|++.+||.+|++. |+|+ .++|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~-~l~v 87 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGR-WCDC 87 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTE-EEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCe-EEEE
Confidence 34456789999999999999999999999999999999854 479999999999999999996 3332 1366
Q ss_pred EEecc
Q 003170 319 KFMDV 323 (842)
Q Consensus 319 rF~r~ 323 (842)
+++..
T Consensus 88 ~~a~~ 92 (103)
T 2cqg_A 88 KLPNS 92 (103)
T ss_dssp ECCCT
T ss_pred EecCC
Confidence 76655
No 163
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.39 E-value=3.5e-13 Score=110.74 Aligned_cols=60 Identities=15% Similarity=0.322 Sum_probs=55.4
Q ss_pred eEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 256 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 256 ~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
+||||||+.+++++||++.|++||+|.++.+.. +||||||+|.+.++|.+|++ |+|..+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~ 66 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN 66 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC
Confidence 599999999999999999999999999999854 57999999999999999998 9998754
No 164
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.38 E-value=1.2e-13 Score=128.29 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=85.7
Q ss_pred CCCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcce
Q 003170 204 NHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH 283 (842)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIes 283 (842)
-.|+.|++.|.|..++ +||+.. + .|..-.+-| ..+-.......+++||||||+.+++++||+++|++||.|..
T Consensus 56 ~afV~f~~~~~a~~A~-~l~g~~--~-~g~~l~v~~---~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~ 128 (175)
T 1fje_B 56 FGYVDFESAEDLEKAL-ELTGLK--V-FGNEIKLEK---PKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRL 128 (175)
T ss_dssp EEEEEESSHHHHHHHH-HGGGEE--E-TTEEEEEEC---CCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEE
T ss_pred EEEEEECCHHHHHHHH-hcCCCE--e-CCeEEEEec---CCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEE
Confidence 4599999999999999 466532 1 133212222 22222334457899999999999999999999999999988
Q ss_pred EE-EecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEecc
Q 003170 284 FF-FFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 323 (842)
Q Consensus 284 V~-~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~ 323 (842)
+. ...+||||||+|.+.++|.+|++.|+|+.+. +|+|+++
T Consensus 129 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 129 VSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp ECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred ecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 81 1248999999999999999999999998765 6666653
No 165
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.38 E-value=7.7e-13 Score=114.35 Aligned_cols=60 Identities=12% Similarity=0.243 Sum_probs=52.4
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-CCceEEEEecChHHHHHHHHHhcCCc
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHF 314 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-~RGFAFVeF~~i~DA~~A~~~L~G~~ 314 (842)
..+..+||||||+.++||+||++.|++||+|.+|++.+ +||||||+|++.+||.+ |+|..
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~ 68 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGED 68 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCC
Confidence 45789999999999999999999999999999999875 79999999999999983 66664
No 166
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.1e-12 Score=113.64 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=63.3
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe---cCCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~---~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
.-..++++||||||+.+++++||+++|+.|+.|.-+.-. ..||||||+|.+.+||.+|++.|+|+.+. +|+|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 345678999999999999999999999999654433321 35799999999999999999999999775 88888
Q ss_pred ccc
Q 003170 322 DVG 324 (842)
Q Consensus 322 r~~ 324 (842)
+..
T Consensus 90 ~~~ 92 (102)
T 2fc8_A 90 KPK 92 (102)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 167
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.7e-13 Score=120.24 Aligned_cols=62 Identities=24% Similarity=0.446 Sum_probs=55.8
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe---------cCCceEEEEecChHHHHHHHHHh---cCCc
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---------PIKGFALVEYINIIDAIRAREYI---RNHF 314 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~---------~~RGFAFVeF~~i~DA~~A~~~L---~G~~ 314 (842)
..+++||||||+.++||+||+++|++||+|. +.+. ++||||||+|++.+||.+|++.| +|+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~ 79 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKL 79 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcE
Confidence 4689999999999999999999999999999 5542 46899999999999999999999 6653
No 168
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.37 E-value=6e-13 Score=118.53 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=59.7
Q ss_pred cccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce---
Q 003170 246 AAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW--- 316 (842)
Q Consensus 246 ~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~--- 316 (842)
...+....+++||||||+.+++|+||++.|++||+|++|.+.+ +||||||+|++.+||.+|++.|+ ..+.
T Consensus 17 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~ 95 (109)
T 2rs2_A 17 RGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKT 95 (109)
T ss_dssp ---------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEE
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEE
Confidence 4556667889999999999999999999999999999999854 58999999999999999998873 4433
Q ss_pred -EEEEecc
Q 003170 317 -RVKFMDV 323 (842)
Q Consensus 317 -RIrF~r~ 323 (842)
+|+++.+
T Consensus 96 l~V~~a~~ 103 (109)
T 2rs2_A 96 IDPKVAFP 103 (109)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 6666654
No 169
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.37 E-value=9.6e-13 Score=124.55 Aligned_cols=74 Identities=26% Similarity=0.303 Sum_probs=66.0
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
...+++||||||+.++++++|+++|++||+|.+|.+.. ++|||||+|.+.++|++|++.|+|..+. +|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999975 4799999999999999999999998765 7777
Q ss_pred eccc
Q 003170 321 MDVG 324 (842)
Q Consensus 321 ~r~~ 324 (842)
+...
T Consensus 149 a~~~ 152 (165)
T 1rk8_A 149 CFVK 152 (165)
T ss_dssp SEEC
T ss_pred ecCC
Confidence 7653
No 170
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.8e-12 Score=114.86 Aligned_cols=75 Identities=15% Similarity=0.068 Sum_probs=62.8
Q ss_pred cccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe-----cCCceEEEEecChHHHHHHHHHhcCCcce----EE
Q 003170 248 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW----RV 318 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~-----~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RI 318 (842)
.......++||||||+.++||+||++.|++||.+ +|++. ++||||||+|++.+||++|+ .|+|+.+. +|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V 86 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVEL 86 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEE
Confidence 3455678999999999999999999999999955 88875 36899999999999999999 57998776 55
Q ss_pred EEeccc
Q 003170 319 KFMDVG 324 (842)
Q Consensus 319 rF~r~~ 324 (842)
..+...
T Consensus 87 ~~~~~~ 92 (102)
T 1wez_A 87 FLNSTA 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 554443
No 171
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=7.2e-13 Score=113.96 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=57.0
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCc-eEEEEecChHHHHHHHHHhcCCcce
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKG-FALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RG-FAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
..+++||||||+.++|++||++.|++||+|.+|.+.+..| ||||+|.+.++|.+|++ |+|..+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~ 70 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLG 70 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEEC
Confidence 4578999999999999999999999999999995544333 99999999999999999 9999765
No 172
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.2e-12 Score=116.24 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=63.9
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
....++||||||+.++++++|+++|++||+|.+|.+.. .||||||+|.+.++|.+|++. +|..+. +|++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34579999999999999999999999999999999865 579999999999999999998 887664 6676
Q ss_pred eccc
Q 003170 321 MDVG 324 (842)
Q Consensus 321 ~r~~ 324 (842)
+...
T Consensus 103 a~~~ 106 (116)
T 1x4b_A 103 AVAR 106 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6553
No 173
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-12 Score=110.15 Aligned_cols=71 Identities=10% Similarity=0.031 Sum_probs=62.9
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
....++||||||+.+++++||++.|++| .|.+|.+.. +||||||+|.+.+||.+|++ |+|..+. +|+++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3567999999999999999999999999 999999864 48999999999999999999 9999775 55665
Q ss_pred cc
Q 003170 322 DV 323 (842)
Q Consensus 322 r~ 323 (842)
..
T Consensus 85 ~~ 86 (91)
T 2dgw_A 85 KS 86 (91)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 174
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.35 E-value=1.7e-13 Score=125.58 Aligned_cols=109 Identities=11% Similarity=0.113 Sum_probs=82.1
Q ss_pred CCCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcce
Q 003170 204 NHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH 283 (842)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIes 283 (842)
-.|+.|++.|.|..++.++. ...|..-.+-|. .......++++||||||+.+++++||++.|++||.|++
T Consensus 47 ~afV~f~~~~~a~~A~~~~~-----~~~g~~i~v~~~-----~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~ 116 (167)
T 2cjk_A 47 FGFLSFEKPSSVDEVVKTQH-----ILDGKVIDPKRA-----IPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIID 116 (167)
T ss_dssp CEEEEESSTHHHHHHHHSCC-----EETTEECCCEEC-----CCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSE
T ss_pred eEEEEEccHHHHHHHHhccc-----ccCCeEcccccc-----cchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEE
Confidence 46999999999999998621 112221111110 01112245789999999999999999999999999999
Q ss_pred EEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEecc
Q 003170 284 FFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 323 (842)
Q Consensus 284 V~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~ 323 (842)
+.+.. +||||||+|.+.++|.+|++ |+|..+. +|+|+++
T Consensus 117 ~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 117 AQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp EECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred EEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 99864 57999999999999999998 8887654 6666653
No 175
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.8e-12 Score=111.15 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=63.3
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEE-Eec--CCceEEEEecChHHHHHHHHHhcCCcce----EEEEecc
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFF-FFP--IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 323 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~-~~~--~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~ 323 (842)
..+++||||||+.+++++||+++|++||+|.+++ +.. ..|.|||+|.+.+||.+|++.|+|..+. +|+|+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 4578999999999999999999999999999994 654 4566999999999999999999999765 7777654
No 176
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.35 E-value=1.8e-12 Score=125.69 Aligned_cols=74 Identities=18% Similarity=0.133 Sum_probs=66.8
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
...++++||||||+.+++++||+++|++||+|++|.+.. ++|||||+|.+.+||++|++.|+|..+. +|+|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 446789999999999999999999999999999999954 6899999999999999999999999765 7777
Q ss_pred ecc
Q 003170 321 MDV 323 (842)
Q Consensus 321 ~r~ 323 (842)
+..
T Consensus 164 a~~ 166 (177)
T 2f3j_A 164 VAS 166 (177)
T ss_dssp ESS
T ss_pred ecC
Confidence 654
No 177
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1e-12 Score=118.71 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=58.5
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceE-EEe-----cCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHF-FFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV-~~~-----~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
......++||||||+.++||+||+++|++||+|.++ .+. ++||||||+|.+.+||++|++ |+|+.+.
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 92 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG 92 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 345567999999999999999999999999999873 332 368999999999999999999 9998754
No 178
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.35 E-value=5.6e-13 Score=109.25 Aligned_cols=59 Identities=20% Similarity=0.402 Sum_probs=53.7
Q ss_pred eEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcc
Q 003170 256 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 256 ~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
+||||||+.+++++||++.|++||+|.++.+. .+||||||+|.+.++|.+|++. +|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~ 65 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV 65 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE
Confidence 58999999999999999999999999999984 3689999999999999999985 66654
No 179
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.34 E-value=4.2e-13 Score=134.87 Aligned_cols=107 Identities=20% Similarity=0.196 Sum_probs=89.1
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcc
Q 003170 203 RNHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLE 282 (842)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIe 282 (842)
.-.|+.|++.+.|..++..+|+.. ++|.++-+....++++||||||+.++|+++|+++|++||+|+
T Consensus 59 g~afV~f~~~~~A~~A~~~l~g~~--------------i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~ 124 (261)
T 3sde_A 59 GFGFIRLESRTLAEIAKAELDGTI--------------LKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVE 124 (261)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCE--------------ETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred cEEEEEECCHHHHHHHHHHcCCcE--------------ECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeE
Confidence 346999999999999998776542 145556666667889999999999999999999999999999
Q ss_pred eEEEec-----CCceEEEEecChHHHHHHHHHhcC-Ccc-------eEEEEecc
Q 003170 283 HFFFFP-----IKGFALVEYINIIDAIRAREYIRN-HFS-------WRVKFMDV 323 (842)
Q Consensus 283 sV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G-~~~-------~RIrF~r~ 323 (842)
+|.+.. ++|||||+|.+.+||.+|++.|+| ..+ ++|++++.
T Consensus 125 ~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 125 KAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp EEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred EEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 999864 489999999999999999999954 332 27777754
No 180
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.01 E-value=1.1e-13 Score=123.17 Aligned_cols=74 Identities=15% Similarity=0.222 Sum_probs=65.6
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcce--------EEEec------CCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIes--------V~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
..++++||||||+.+++++||+++|++||+|.+ |.+.. .||||||+|.+.+||.+|++.|+|..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 467899999999999999999999999999998 77643 5899999999999999999999998775
Q ss_pred ----EEEEeccc
Q 003170 317 ----RVKFMDVG 324 (842)
Q Consensus 317 ----RIrF~r~~ 324 (842)
+|++++..
T Consensus 84 g~~l~V~~a~~~ 95 (116)
T 2lcw_A 84 GNPIKVSFATRR 95 (116)
Confidence 77777553
No 181
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=9.8e-13 Score=111.62 Aligned_cols=55 Identities=20% Similarity=0.336 Sum_probs=51.0
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-CCceEEEEecChHHHHHH
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRA 306 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-~RGFAFVeF~~i~DA~~A 306 (842)
..+++||||||+.+++|+||++.|++||+|.+|++.. +||||||+|++.++|++|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH
Confidence 4689999999999999999999999999999999865 699999999999999754
No 182
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.32 E-value=5e-13 Score=116.01 Aligned_cols=63 Identities=19% Similarity=0.377 Sum_probs=57.1
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHH---HhcCCc
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRARE---YIRNHF 314 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~---~L~G~~ 314 (842)
..+++||||||+.+++++||++.|++||+|++|.+.. .||||||+|++.+||.+|++ .|+|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~ 77 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKK 77 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEE
Confidence 3568999999999999999999999999999999875 68999999999999999999 566653
No 183
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.31 E-value=2.6e-12 Score=116.12 Aligned_cols=66 Identities=14% Similarity=-0.058 Sum_probs=59.7
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCC---cceEEEe-----cCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGP---LEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGp---IesV~~~-----~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
.....++||||||+.++||+||++.|++||. |.+|++. ++||||||+|.+.+||++|++ |+|+.+.
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 86 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG 86 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC
Confidence 3456789999999999999999999999999 8999986 368999999999999999999 9998654
No 184
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.31 E-value=1.4e-12 Score=131.07 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=62.6
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccC--CcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFG--PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfG--pIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
..++||||||+.++||+||+++|++|| .|.+|++.. +||||||+|.+.+||.+|++.|+|+.+. +|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999853 6899999999999999999999999765 6666
Q ss_pred ecc
Q 003170 321 MDV 323 (842)
Q Consensus 321 ~r~ 323 (842)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 654
No 185
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.31 E-value=1.6e-12 Score=121.99 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=81.7
Q ss_pred CCCCCCCCccccccccCCCCCCCCCcccccccceeeecc-CCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcc
Q 003170 204 NHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFD-EDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLE 282 (842)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~-g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIe 282 (842)
-.||.|++.|.|..++.. +.. ...|..-.+-|... .+....+....+++||||||+.++|+++|+++|++||.|+
T Consensus 57 ~afV~f~~~~~A~~A~~~-~~~---~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 132 (196)
T 1l3k_A 57 FGFVTYATVEEVDAAMNA-RPH---KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132 (196)
T ss_dssp EEEEEESSHHHHHHHHHT-CSC---EETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEE
T ss_pred eEEEEeCCHHHHHHHHhc-CCC---EECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeE
Confidence 369999999999999975 221 12333222223111 1111223345679999999999999999999999999999
Q ss_pred eEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEecc
Q 003170 283 HFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 323 (842)
Q Consensus 283 sV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~ 323 (842)
+|.+.+ ++|||||+|.+.+||.+|++. +|+.+. +|+++.+
T Consensus 133 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALS 182 (196)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-
T ss_pred EEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCC
Confidence 999864 489999999999999999986 576554 7777755
No 186
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=6e-12 Score=110.77 Aligned_cols=64 Identities=13% Similarity=-0.007 Sum_probs=58.0
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcce-EEEe-----cCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH-FFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIes-V~~~-----~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
...++||||||+.++||+||++.|++||.|.+ |.+. ++||||||+|++.+||++|++. +|+.+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~ 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC
Confidence 56789999999999999999999999999987 7664 4789999999999999999998 888765
No 187
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.28 E-value=4.3e-12 Score=119.28 Aligned_cols=65 Identities=14% Similarity=-0.069 Sum_probs=59.2
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCC---cceEEEe-----cCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGP---LEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGp---IesV~~~-----~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
....++||||||+.++||+||++.|++||. |++|++. ++||||||+|.+.+||++|++ |+|+.+.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~ 113 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG 113 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC
Confidence 456789999999999999999999999999 8899986 368999999999999999999 9998654
No 188
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.28 E-value=3.2e-12 Score=113.02 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=59.1
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCC---cceEEEe-----cCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGP---LEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGp---IesV~~~-----~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
....+.||||||+.++|++||++.|+.||. |.+|.+. ++||||||+|.+.+||.+|++ |+|+.+.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC
Confidence 456789999999999999999999999999 8999985 378999999999999999999 9998643
No 189
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.26 E-value=1.1e-11 Score=111.33 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=61.8
Q ss_pred CCCCCeEEecCCCC-----ccCHHHHHHhccccCCcceEEEec-------CCceEEEEecChHHHHHHHHHhcCCcce--
Q 003170 251 FSASKQLWLGSFGP-----EASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW-- 316 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~-----dvtE~dL~~~F~rfGpIesV~~~~-------~RGFAFVeF~~i~DA~~A~~~L~G~~~~-- 316 (842)
..+|+.|+|+||-. +.+++||+++|++||+|.+|++.+ +||||||+|.+.+||.+|++.|+|+.+.
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 36799999999973 458999999999999999999863 5899999999999999999999999754
Q ss_pred --EEEEecc
Q 003170 317 --RVKFMDV 323 (842)
Q Consensus 317 --RIrF~r~ 323 (842)
+++|++.
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 5566543
No 190
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.24 E-value=1.7e-11 Score=113.89 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=82.5
Q ss_pred cCCceEEEEecChHHHHHHHHHhcCCcce--EEEEecccc------CCccccccccccccceEEEccCCCchhHHHHHHH
Q 003170 288 PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL------GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHE 359 (842)
Q Consensus 288 ~~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RIrF~r~~l------Gsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E 359 (842)
+.+|||||+|.+.++|++|++.++|.... .+.+..... .............++.|||||++..++.|+|.+.
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 48899999999999999999998875332 121111100 0000011122356899999999999999999999
Q ss_pred HhhccccCCceeee----cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 360 SYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 360 ~~k~g~~g~~~~~d----l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
|.++|.+..+.+.. =.++.+|||+|.+.++|..|+..|+++.++
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 138 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 138 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS
T ss_pred HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 99987654432211 124568999999999999999999998764
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.24 E-value=9.5e-12 Score=122.60 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=60.6
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCc--ceEEEecC----CceEEEEecChHHHHHHHHHhcCCcc
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPL--EHFFFFPI----KGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpI--esV~~~~~----RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
+..++++|||+||+.++|++||+++|++||.| .+|++.+. +|||||+|.+.+||.+|++.|+|..+
T Consensus 119 ~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~ 190 (205)
T 3tyt_A 119 IQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQM 190 (205)
T ss_dssp CCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred cCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCc
Confidence 45678999999999999999999999999999 89998763 59999999999999999999999853
No 192
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.23 E-value=1.1e-11 Score=135.62 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=66.7
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
..++++||||||+.++|+++|+++|++||+|..|.|.. ++|||||+|.+.++|.+|++.|+|..+. +|+|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45679999999999999999999999999999999864 5899999999999999999999999876 7778
Q ss_pred ecc
Q 003170 321 MDV 323 (842)
Q Consensus 321 ~r~ 323 (842)
+..
T Consensus 179 a~~ 181 (437)
T 3pgw_S 179 ERG 181 (437)
T ss_pred eCC
Confidence 764
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=3.9e-11 Score=107.08 Aligned_cols=74 Identities=12% Similarity=0.187 Sum_probs=63.6
Q ss_pred cCCCCCeEEecCCCCcc-----------CHHHHHHhccccCCcceEEEe--cCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 250 IFSASKQLWLGSFGPEA-----------SEAHIRFQIDRFGPLEHFFFF--PIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dv-----------tE~dL~~~F~rfGpIesV~~~--~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
...+++.|+|.||-... +++||+++|++||+|.+|.+. .+||||||+|.+.+||.+|++.|+|+.+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 45689999999995443 368999999999999999875 37999999999999999999999999765
Q ss_pred ----EEEEecc
Q 003170 317 ----RVKFMDV 323 (842)
Q Consensus 317 ----RIrF~r~ 323 (842)
+|+|++.
T Consensus 91 gr~l~v~~a~~ 101 (112)
T 2dit_A 91 GRQITAQAWDG 101 (112)
T ss_dssp TEECEEEECCS
T ss_pred CcEEEEEEeCC
Confidence 7777765
No 194
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=1.9e-11 Score=110.74 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=61.1
Q ss_pred CCCCCe-EEecCCCCccCHHH----HHHhcccc-CCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 251 FSASKQ-LWLGSFGPEASEAH----IRFQIDRF-GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 251 ~s~Sr~-LwVGnL~~dvtE~d----L~~~F~rf-GpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
..++.+ |||+||+.++++++ |+++|++| |+|.+|. .|||||.|.++++|.+|++.|||+.+. ||.|
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 356777 99999999999988 66899999 5999993 399999999999999999999999876 8888
Q ss_pred ecc
Q 003170 321 MDV 323 (842)
Q Consensus 321 ~r~ 323 (842)
+..
T Consensus 81 A~~ 83 (96)
T 2diu_A 81 TPK 83 (96)
T ss_dssp SCC
T ss_pred cCC
Confidence 865
No 195
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.19 E-value=8.8e-12 Score=117.69 Aligned_cols=66 Identities=14% Similarity=0.013 Sum_probs=57.0
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe-----cCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~-----~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
+.....++||||||+.++||+||++.|++|| |.+|++. ++||||||+|++.+||++|+ .|+|+.+.
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~ 111 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ 111 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC
Confidence 3445678999999999999999999999999 6789885 37999999999999999999 88998765
No 196
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.19 E-value=2e-11 Score=113.12 Aligned_cols=114 Identities=18% Similarity=0.101 Sum_probs=86.0
Q ss_pred cCCceEEEEecChHHHHHHHHHh-cCCcce---EEEEeccccC-------CccccccccccccceEEEccCCCchhHHHH
Q 003170 288 PIKGFALVEYINIIDAIRAREYI-RNHFSW---RVKFMDVGLG-------TKGVINGVAVGSCFHVYVGNIPNQWAKDEI 356 (842)
Q Consensus 288 ~~RGFAFVeF~~i~DA~~A~~~L-~G~~~~---RIrF~r~~lG-------srg~~~Gva~~~s~~LwVG~Iss~~~kEEi 356 (842)
.-+|+++|+|.+.++|++|++.| +|..+. +++++..... ............++.|||||++..++.++|
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCCEEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCCceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 46899999999999999999999 777653 5554432100 000011222357899999999999999999
Q ss_pred HHHHhhccccCCceeeecC-CCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 357 LHESYKVVYKGPYMVTDLS-CEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 357 ~~E~~k~g~~g~~~~~dl~-~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+-|.++|.+..+.+ .. +++++||+|.+.++|..|+..|+++.++
T Consensus 91 ~~~F~~~G~i~~v~i--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 136 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWV--ARNPPGFAFVEFEDPRDAADAVRELDGRTLC 136 (150)
T ss_dssp HHHHHHHSCEEEEEE--CSSSCSEEEEEESSHHHHHHHHHHHSSSCSS
T ss_pred HHHHHhhCCEEEEEE--eeCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 999999876544333 33 4889999999999999999999998763
No 197
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=2.9e-11 Score=109.47 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=56.6
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEe-----cCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~-----~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
..++||||||+.++||+||++.|+.| .|++|.+. ++||||||+|.+.+||++|+ .|+|+.+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~ 81 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI 81 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 35799999999999999999999999 89999985 47999999999999999999 79998654
No 198
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1.9e-11 Score=113.18 Aligned_cols=63 Identities=14% Similarity=0.098 Sum_probs=56.3
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCc----ceEEEe-----cCCceEEEEecChHHHHHHHHHhcCCcc
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPL----EHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpI----esV~~~-----~~RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
...++||||||+.++||+||++.|++||+| ++|++. ++||||||+|.+.+||++|++. +|+.+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 457899999999999999999999999986 688875 3789999999999999999996 88754
No 199
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.08 E-value=1.4e-10 Score=108.05 Aligned_cols=63 Identities=13% Similarity=0.013 Sum_probs=54.9
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcc--eEEEe-----cCCceEEEEecChHHHHHHHHHhcCCcc
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLE--HFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIe--sV~~~-----~~RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
....+.||||||+.++||+||++.|+.| .|. +|++. ++||||||+|++.+||++|++. +|+.+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l 108 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERI 108 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEE
Confidence 3567899999999999999999999999 566 88875 3799999999999999999985 66643
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.08 E-value=1.7e-10 Score=103.47 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=60.3
Q ss_pred CCCCeEEecCCCC--cc--------CHHHHHHhccccCCcceEEEec--------CCceEEEEecChHHHHHHHHHhcCC
Q 003170 252 SASKQLWLGSFGP--EA--------SEAHIRFQIDRFGPLEHFFFFP--------IKGFALVEYINIIDAIRAREYIRNH 313 (842)
Q Consensus 252 s~Sr~LwVGnL~~--dv--------tE~dL~~~F~rfGpIesV~~~~--------~RGFAFVeF~~i~DA~~A~~~L~G~ 313 (842)
.||+.|.|.|+-. +. .++||+++|++||+|++|++.+ ++|||||+|.+.+||.+|++.|+|+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 5788899999833 22 4579999999999999999863 5799999999999999999999999
Q ss_pred cce----EEEEecc
Q 003170 314 FSW----RVKFMDV 323 (842)
Q Consensus 314 ~~~----RIrF~r~ 323 (842)
.+. ++.|.+.
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 765 6666654
No 201
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.07 E-value=1.5e-10 Score=113.47 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=55.4
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcC
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRN 312 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G 312 (842)
..++||||||+.++|+++|++.|++||+|.+|++.+ .||||||+|++.++|.+|++.+++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~ 172 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ 172 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC
Confidence 458999999999999999999999999999999864 789999999999999999987754
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=7.1e-10 Score=99.56 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=53.6
Q ss_pred CccCHHHHHHhccccCCcceEEEe-cCCceEEEEecChHHHHHHHHHhcCCc--ceEEEEeccc
Q 003170 264 PEASEAHIRFQIDRFGPLEHFFFF-PIKGFALVEYINIIDAIRAREYIRNHF--SWRVKFMDVG 324 (842)
Q Consensus 264 ~dvtE~dL~~~F~rfGpIesV~~~-~~RGFAFVeF~~i~DA~~A~~~L~G~~--~~RIrF~r~~ 324 (842)
.+++|++|+++|++||.|.+|++. ++||||||+|++.+||++|++.++|.. ..+|+|++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccCC
Confidence 679999999999999999999996 699999999999999999999988752 2388887653
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.01 E-value=5.1e-10 Score=103.06 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=59.7
Q ss_pred CCCCeEEecCCCC-----ccCHHHHHHhccccCCcceEEEec----------CCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 252 SASKQLWLGSFGP-----EASEAHIRFQIDRFGPLEHFFFFP----------IKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 252 s~Sr~LwVGnL~~-----dvtE~dL~~~F~rfGpIesV~~~~----------~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
++|+.|.|.|+-. +-.++||+++|++||+|.+|++.+ ++|||||+|.+.+||.+|++.|+|+.+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3799999999853 234799999999999999999864 2499999999999999999999999754
Q ss_pred ----EEEEec
Q 003170 317 ----RVKFMD 322 (842)
Q Consensus 317 ----RIrF~r 322 (842)
+++|.+
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 556654
No 204
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.97 E-value=1.9e-10 Score=102.93 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=51.0
Q ss_pred ecCCCCccCHHHHHHhc------------cccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 259 LGSFGPEASEAHIRFQI------------DRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 259 VGnL~~dvtE~dL~~~F------------~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
+++|+.++++++|++.| ++||+|.+|++.+ +||||||+|.+.+||.+|++.|+|+.+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 67888888888887766 9999999999975 5899999999999999999999999754
No 205
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.96 E-value=5.1e-10 Score=106.97 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=59.2
Q ss_pred CeEEecCC----CCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecC----hHH----HHHHHH--HhcCCc
Q 003170 255 KQLWLGSF----GPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYIN----IID----AIRARE--YIRNHF 314 (842)
Q Consensus 255 r~LwVGnL----~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~----i~D----A~~A~~--~L~G~~ 314 (842)
.+|||||| +..++|.+|++.|+.||+|.++.+. ++||||||+|.| +++ |.+|++ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999974 589999999997 545 788888 789987
Q ss_pred ce----EEEEeccc
Q 003170 315 SW----RVKFMDVG 324 (842)
Q Consensus 315 ~~----RIrF~r~~ 324 (842)
+. ||++.+-+
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 65 66766653
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.95 E-value=1.7e-09 Score=99.08 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=59.2
Q ss_pred CCCCeEEecCCCCc----------cCHHHHHHhccccCCcceEEEec--CCceEEEEecChHHHHHHHHHhcCCcce---
Q 003170 252 SASKQLWLGSFGPE----------ASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFSW--- 316 (842)
Q Consensus 252 s~Sr~LwVGnL~~d----------vtE~dL~~~F~rfGpIesV~~~~--~RGFAFVeF~~i~DA~~A~~~L~G~~~~--- 316 (842)
.+|+.|-+-|+=.. -.++||+++|++||.|.+|++.+ +||||||+|.+.+||.+|++.|+|+.+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 35777777776543 24679999999999999999976 5899999999999999999999999765
Q ss_pred -EEEEecc
Q 003170 317 -RVKFMDV 323 (842)
Q Consensus 317 -RIrF~r~ 323 (842)
+++|...
T Consensus 85 i~v~~~~~ 92 (114)
T 3s6e_A 85 ITAAYVPL 92 (114)
T ss_dssp CEEEEECH
T ss_pred EEEEEEcH
Confidence 6666643
No 207
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.72 E-value=1e-08 Score=95.00 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=55.5
Q ss_pred eEEEEecChHHHHHHHHHhcCCcceEEEEeccccCCccccc-c---ccccccceEEEccCCCchhHHHHHHHHhhccccC
Q 003170 292 FALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTKGVIN-G---VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKG 367 (842)
Q Consensus 292 FAFVeF~~i~DA~~A~~~L~G~~~~RIrF~r~~lGsrg~~~-G---va~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g 367 (842)
++|.+|.|..=|..|+..|+|.... .+|.+. | -....+++|||||++..++.++|.+.|.++|.+-
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~----------g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQM----------GRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp ---------------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred cccccccCCCchhhhhhhccCCCCC----------CCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 4566666666777777777775311 111111 1 1125688999999999999999999999987665
Q ss_pred Cceeee----cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 368 PYMVTD----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 368 ~~~~~d----l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+.+.. =.++.+|||+|++.++|..|+..|++..++
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~ 115 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 115 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 433321 123458999999999999999999988764
No 208
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.65 E-value=2.4e-08 Score=94.49 Aligned_cols=109 Identities=13% Similarity=0.009 Sum_probs=54.2
Q ss_pred EEecChHHHHHHHHHhcCCcce------EEEEecccc-CCcccc----------ccccccccceEEEccCCCchhHHHHH
Q 003170 295 VEYINIIDAIRAREYIRNHFSW------RVKFMDVGL-GTKGVI----------NGVAVGSCFHVYVGNIPNQWAKDEIL 357 (842)
Q Consensus 295 VeF~~i~DA~~A~~~L~G~~~~------RIrF~r~~l-Gsrg~~----------~Gva~~~s~~LwVG~Iss~~~kEEi~ 357 (842)
++|++.+||.+|+..|++.... +.+.....- +....+ ......++++||||||+..++.++|.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7999999999999999998654 111111000 000001 11122567889999999999999999
Q ss_pred HHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 358 HESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 358 ~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..|.++|.+-.+.+..- .++++|||+|.+.++|..|+..|+++.+.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 140 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 140 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 99999866544333211 12578999999999999999999987763
No 209
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=6.2e-08 Score=90.72 Aligned_cols=61 Identities=7% Similarity=0.026 Sum_probs=57.8
Q ss_pred CCCCCeEEecCCCCc-cCHHHHHHhccccCCcceEEEecCCceEEEEecC-hHHHHHHHHHhc
Q 003170 251 FSASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYIN-IIDAIRAREYIR 311 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~d-vtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~-i~DA~~A~~~L~ 311 (842)
..+.+-||||||+.+ ++++||+++|+.||+|..|++.+.+-+|||.|.+ ..+|.+|++.|+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTT
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhh
Confidence 356788999999999 9999999999999999999999999999999999 899999999995
No 210
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.61 E-value=7.8e-08 Score=82.79 Aligned_cols=66 Identities=11% Similarity=0.164 Sum_probs=56.8
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++.|||||++..++.++|.+.|.++|.+.. +.....+.+|||+|.+.++|..|++.|+++.++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRT--IDHVKGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEE--EEECSSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--EEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 467899999999999999999999999876544 444556889999999999999999999988764
No 211
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.59 E-value=1.1e-08 Score=112.10 Aligned_cols=129 Identities=9% Similarity=0.022 Sum_probs=87.5
Q ss_pred HHHHhccccCCcceEEEe--------cCCceE-----EEEecChHHHHHHHHHhcCCcce-----------------EEE
Q 003170 270 HIRFQIDRFGPLEHFFFF--------PIKGFA-----LVEYINIIDAIRAREYIRNHFSW-----------------RVK 319 (842)
Q Consensus 270 dL~~~F~rfGpIesV~~~--------~~RGFA-----FVeF~~i~DA~~A~~~L~G~~~~-----------------RIr 319 (842)
+|.++|..+|||..+... ...+|+ |++|.+..+|..|+..++..... .+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 488999999999987321 123455 99999877776655444332111 111
Q ss_pred EeccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeee----cCCCceeeEEecChhhHHHHHH
Q 003170 320 FMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMA 395 (842)
Q Consensus 320 F~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d----l~~r~~afVEF~s~edAa~Am~ 395 (842)
...+.. ...+...++++||||||+..++.++|.+.|.+||.+-.+.|.. -.++++|||+|.+.++|..|+.
T Consensus 88 ~~~p~~-----~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 162 (437)
T 3pgw_S 88 MWDPHN-----DPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162 (437)
T ss_pred hcCCcc-----cccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHH
Confidence 111110 0011235678999999999999999999999987665543321 1136789999999999999999
Q ss_pred HhhhcccC
Q 003170 396 HLRQHRKS 403 (842)
Q Consensus 396 ~lrg~R~e 403 (842)
.|+++.+.
T Consensus 163 ~lng~~i~ 170 (437)
T 3pgw_S 163 HADGKKID 170 (437)
T ss_pred HcCCCEEC
Confidence 99988764
No 212
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.53 E-value=1.6e-07 Score=81.09 Aligned_cols=65 Identities=20% Similarity=0.154 Sum_probs=57.1
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+++.||||+|+..++.|+|.+.|.++|.+.. ++...++++|||+|.+.++|..|++.|+++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~ 77 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGE--VFIHKDKGFGFIRLETRTLAEIAKVELDNMPLR 77 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSE--EEEETTTTEEEEECSSSHHHHHHHHHHTTCCBT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEE--EEEecCCCEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 67899999999999999999999999876644 444577899999999999999999999988764
No 213
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=1.1e-07 Score=79.51 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=54.8
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++++|||||++..++.++|.+.|.++|.+..+.+..- .++.+|||+|.+.++|..|++.|+++..+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 46889999999999999999999998765544333211 22568999999999999999999998864
No 214
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.52 E-value=1.6e-07 Score=84.15 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=55.0
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R 401 (842)
.++++|||||++..++.++|.+.|.++|.+-. ++.+.++++|||||++.++|..|+..|++..
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~--v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~ 75 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICY--VMMMPFKRQALVEFENIDSAKECVTFAADVP 75 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEE--EEEETTTTEEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--EEEECCCCEEEEEECCHHHHHHHHHHhccCC
Confidence 67999999999999999999999999876654 4445678999999999999999999988764
No 215
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.5e-07 Score=81.40 Aligned_cols=65 Identities=15% Similarity=0.273 Sum_probs=56.7
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++|||||++..++.|+|.+.|.++|.+..+ +...++++|||+|.+.++|..|+..|+++..+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~--~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDF--KHYPEKGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEE--EEETTTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEE--EEecCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 457899999999999999999999998766554 44478999999999999999999999988764
No 216
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=1.6e-07 Score=79.73 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=55.3
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++++|||||++..++.++|.+.|.++|.+..+.+. +++|||+|.+.++|..|+..|+++.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~ 68 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLH 68 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccC
Confidence 3578999999999999999999999998765544443 789999999999999999999987764
No 217
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.51 E-value=1e-07 Score=79.47 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=55.3
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCcee-ee---cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~-~d---l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++.|||||++..++.++|.+.|.++|.+..+.+ ++ -..+++|||+|.+.++|..|++.|+++..+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 75 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 75 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 467899999999999999999999999876544322 11 114678999999999999999999988753
No 218
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=1.7e-07 Score=79.66 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=57.5
Q ss_pred cccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 331 INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 331 ~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
+.+....+++.||||||+..++.|+|.+.|.++|.+..+.+..- .++.+|||+|.+.++|..|++.|+++.++
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 8 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp CCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 34444578999999999999999999999999876544333211 13568999999999999999999987753
No 219
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=2.7e-07 Score=79.56 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=58.1
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
...++.|||||++..++.++|.+.|.++|.+. +.+..-.++.+|||+|.+.++|..|+..|++..+.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG 82 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45689999999999999999999999988775 44444467889999999999999999999998764
No 220
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.49 E-value=1.7e-07 Score=84.83 Aligned_cols=64 Identities=11% Similarity=0.044 Sum_probs=55.9
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcc
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R 401 (842)
..+|++|||||++..+++|||.+-|.+||.+-. ++.+.+++.|||||++.++|..|+..+++..
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~--v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~ 81 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISY--VVVMPKKRQALVEFEDVLGACNAVNYAADNQ 81 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEE--EEEETTTTEEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEE--EEEEcCCCEEEEEECCHHHHHHHHHHhcCCC
Confidence 368999999999999999999999999766544 4456789999999999999999999998764
No 221
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.48 E-value=1.3e-07 Score=85.22 Aligned_cols=63 Identities=13% Similarity=0.015 Sum_probs=54.9
Q ss_pred cccceEEEccCCC-chhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcc
Q 003170 337 GSCFHVYVGNIPN-QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 337 ~~s~~LwVG~Iss-~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R 401 (842)
.++++|||||++. .++.+||.+.|..||.+-. ++.+.++++|||||++.++|..|+..|++..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~--v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~ 76 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISN--HLILNKINEAFIEMATTEDAQAAVDYYTTTP 76 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEE--EEECSSSSCEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEE--EEEEcCCCEEEEEECCHHHHHHHHHHHcCCC
Confidence 5799999999999 9999999999999766554 4446788999999999999999999988764
No 222
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.47 E-value=1.9e-07 Score=80.28 Aligned_cols=66 Identities=23% Similarity=0.256 Sum_probs=54.0
Q ss_pred ccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 338 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 338 ~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
+++.||||||+..++.++|.+.|.++|.+-.+.+..- .++++|||+|.+.++|..|++.|+|+..+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 70 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG 70 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 5789999999999999999999999876544333211 22678999999999999999999988764
No 223
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.46 E-value=2.8e-07 Score=79.66 Aligned_cols=62 Identities=23% Similarity=0.233 Sum_probs=53.0
Q ss_pred ceEEEccCCCchhHHHHHHHHhhccccCCceeeecC-CCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 340 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS-CEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 340 ~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~-~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
++|||||++..+++++|.+.|.++|.+-.+.+ .. ++.+|||+|.+.++|..|++.|++...+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 63 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWI--ARNPPGFAFVEFEDPRDAEDAVRGLDGKVIC 63 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEE--ESSSSSEEEEECSSHHHHHHHHHHHHHSCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--eeCCCCEEEEEECCHHHHHHHHHHHCCCeEC
Confidence 47999999999999999999999876554333 33 5889999999999999999999988764
No 224
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=2.3e-07 Score=79.70 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=55.3
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++++|||||++..++.|+|.+.|.++|.+..+.+..- ..+.+|||+|.+.++|..|+..|+++..+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ 76 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 357899999999999999999999999876544333211 13478999999999999999999998764
No 225
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=3.1e-07 Score=78.21 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=54.7
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+++.|||||++..++.++|.+.|.++|.+-.+.+..- .++.+|||+|.+.++|..|+..|+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA 73 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 47899999999999999999999999876544333211 12458999999999999999999988764
No 226
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.44 E-value=2.3e-07 Score=77.53 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=54.4
Q ss_pred ccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC-----CCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 338 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS-----CEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 338 ~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~-----~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+++|||||++..++.++|.+.|.++|.+..+.+..-. .+++|||+|.+.++|..|+..|++...+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID 73 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC
Confidence 46799999999999999999999998765543332211 5778999999999999999999988764
No 227
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.44 E-value=3.1e-07 Score=76.81 Aligned_cols=67 Identities=27% Similarity=0.344 Sum_probs=56.2
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhcccc-C-------C-ceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYK-G-------P-YMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~-g-------~-~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
...++.|||||++..++.+||.+.|.++|.+ | . ..+....++++|||+|.+.++|..|+ .|+++..+
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 3578999999999999999999999998322 3 3 35556677999999999999999999 99987753
No 228
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=4.6e-07 Score=78.60 Aligned_cols=68 Identities=13% Similarity=0.053 Sum_probs=55.4
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec--CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL--SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl--~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
...+++||||||+..++.++|.+.|.++|.+-.+.+..- .++.+|||+|.+.++|..|+..|+++.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 81 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 467899999999999999999999999766544333211 13678999999999999999999988764
No 229
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=2.9e-07 Score=78.49 Aligned_cols=67 Identities=7% Similarity=0.114 Sum_probs=55.6
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCc-eeee----cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTD----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~-~~~d----l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++++|||||++..++.++|.+.|.++|.+..+ .+.. =.++.+|||+|.+.++|..|+..|+++.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC 74 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 468999999999999999999999998777654 3321 113578999999999999999999988764
No 230
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.43 E-value=2.6e-07 Score=80.54 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=54.2
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++++||||||+..++.|+|.+-|.++|.+-.+.+ . +.+|||+|.+.++|..|+..|+++.++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~--~--~~~afV~f~~~~~a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK--L--KDYAFIHFDERDGAVKAMEEMNGKDLE 71 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEE--C--SSCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--E--CCEEEEEeCCHHHHHHHHHHHCCCccC
Confidence 357899999999999999999999999765544322 2 669999999999999999999988764
No 231
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=4.3e-07 Score=78.74 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=55.6
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeee--cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d--l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++.||||||+..++.++|.+.|.++|.+-.+.+.. -..+.+|||+|.+.++|..|+..|+++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL 81 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence 6789999999999999999999999987665433322 124678999999999999999999988764
No 232
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=2.3e-07 Score=79.76 Aligned_cols=68 Identities=10% Similarity=0.092 Sum_probs=55.7
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccC-Cceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKG-PYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g-~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++++|||||++..++.|+|.+.|.++|.+- .+.+..- .++.+|||+|.+.++|..|+..|+++..+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP 78 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 36789999999999999999999999987665 4433221 12367999999999999999999998764
No 233
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=4.5e-07 Score=79.58 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=55.8
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeee-cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD-LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d-l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
...+++||||||+..++.|||.+.|.++|.+..+.+.. -.++.+|||+|++.|+|..|++.|+++.++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 87 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD 87 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46789999999999999999999999987665543321 123558999999999999999999988764
No 234
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=2.3e-07 Score=77.53 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=55.1
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHh-hhccc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHL-RQHRK 402 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~l-rg~R~ 402 (842)
..++.|||||++..++.|+|.+.|.++|.+.. +....++++|||+|.+.++|..|+..| +++..
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~--~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~ 74 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRT--ITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIV 74 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEE--EEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeE--EEEECCCCEEEEEECCHHHHHHHHHHhcCCeeE
Confidence 67899999999999999999999999866544 444567899999999999999999988 77655
No 235
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=2.7e-07 Score=78.67 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=55.4
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccc-cCCceeeecCCCceeeEEecChhhHHHHHHHhhh-cccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVY-KGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ-HRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~-~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg-~R~e 403 (842)
...+++|||||++..++.|+|.+.|.++|. +..+.+ .++.+|||+|.+.++|..|++.|++ ...+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 71 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL---LKSGYAFVDYPDQNWAIRAIETLSGKVELH 71 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE---EETTEEEECCSCHHHHHHHHHHHTTTCEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE---cCCCEEEEEECCHHHHHHHHHHccCCeeEC
Confidence 357899999999999999999999999876 444333 5689999999999999999999999 5553
No 236
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=3.1e-07 Score=78.33 Aligned_cols=64 Identities=14% Similarity=0.095 Sum_probs=54.7
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
...+++|||||++..++.++|.+-|.++|.+..+.+ . +.+|||+|++.++|..|+..|+++..+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~--~--~~~afV~f~~~~~a~~A~~~l~g~~~~ 70 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDI--V--KDYAFVHMERAEDAVEAIRGLDNTEFQ 70 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEE--C--SSEEEEEESCHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--E--CCEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 367899999999999999999999999876554333 2 559999999999999999999988764
No 237
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.42 E-value=3.4e-07 Score=81.78 Aligned_cols=65 Identities=23% Similarity=0.147 Sum_probs=56.5
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++|||||++..++.++|.+.|.++|.+-. +....++++|||+|.+.++|..|+..|+++..+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 72 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGR--VLLPEGGITAIVEFLEPLEARKAFRHLAYSKFH 72 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEE--EECCSSSSCEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--EEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 46889999999999999999999999765543 444568889999999999999999999998864
No 238
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.42 E-value=2.7e-07 Score=77.17 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=53.4
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++++|||||++..++.++|.+.|.++|.+..+.+..- .++.+|||+|.+.++|..|+..|+++..+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 74 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46789999999999999999999999876655433221 12458999999999999999999987753
No 239
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.42 E-value=3.2e-07 Score=81.75 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=55.9
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++.|||||++..++++||.+.|.++|.+..+.+. +++|||+|.+.++|..|+..|+++..+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFA 91 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 578999999999999999999999998776654443 889999999999999999999998764
No 240
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=3.7e-07 Score=80.34 Aligned_cols=67 Identities=12% Similarity=-0.008 Sum_probs=54.9
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC---CCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS---CEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~---~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++++||||||+..++.++|.+.|.++|.+-.+.+..-. ++.+|||+|.+.++|..|+..|+++.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF 82 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 678999999999999999999999998765543332211 2458999999999999999999988764
No 241
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=2.6e-07 Score=82.53 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=54.2
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhc
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 400 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~ 400 (842)
..++++|||||++..++.|+|.+.|.+||.+-. ++.+.++++|||||++.++|..|+..+++.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~--v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~ 74 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTN--ILMLKGKNQAFLELATEEAAITMVNYYSAV 74 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEE--EEEETTTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--EEEECCCCEEEEEECCHHHHHHHHHHhccC
Confidence 468999999999999999999999999876644 444567999999999999999999987653
No 242
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.40 E-value=4.6e-07 Score=78.23 Aligned_cols=64 Identities=22% Similarity=0.206 Sum_probs=54.3
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCc-eeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~-~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+++.|||||++..++.++|.+.|.++|. |.+ .++. .+++|||+|.+.++|..|+..|+++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~-g~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKP-GAVERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTST-TCEEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCC-cceEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 67899999999999999999999999844 443 2322 3779999999999999999999998764
No 243
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.40 E-value=4.7e-07 Score=76.85 Aligned_cols=68 Identities=9% Similarity=-0.059 Sum_probs=55.7
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++.|||||++..++.|+|.+.|.++|.+..+.+..- ..+.+|||+|.+.++|..|+..|+++.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 467999999999999999999999999876655433221 22457999999999999999999988763
No 244
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.40 E-value=4e-07 Score=78.58 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=54.1
Q ss_pred cccceEEEccCCC-chhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPN-QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss-~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++++|||||++. .++.++|.+.|.++|.+-.+.+ .+++|||+|.+.++|..|+..|+++...
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIECESQEMNF 71 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE----ETTEEEEEESCHHHHHHHHHHHTCSSCB
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 5789999999998 9999999999999866655444 3889999999999999999999987753
No 245
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.40 E-value=2.4e-07 Score=77.41 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=51.9
Q ss_pred cceEEEccCCCch------hHHHHHHHHhhccccCCceeeec--CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 339 CFHVYVGNIPNQW------AKDEILHESYKVVYKGPYMVTDL--SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 339 s~~LwVG~Iss~~------~kEEi~~E~~k~g~~g~~~~~dl--~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
++.|||||++..+ ++++|.+.|.++|.+-.+.+..- .++++|||+|.+.++|..|++.|+|+..+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 73 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 73 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC
Confidence 4789999999988 67999999999766544333211 24678999999999999999999998764
No 246
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.40 E-value=3.4e-07 Score=79.50 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=55.1
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCC---CceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC---EGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~---r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++++||||||+..++.|+|.+.|.++|.+-.+.+..-.. +.+|||+|.+.++|..|++.|+++...
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 82 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM 82 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 5689999999999999999999999987665543322111 568999999999999999999988753
No 247
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.40 E-value=2.7e-07 Score=79.20 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=55.4
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec-------CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL-------SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl-------~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+++.|||||++..++.|+|.+.|.++|.+..+.+..- .++.+|||+|.+.++|..|+..|+++.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 57899999999999999999999999876655433321 23568999999999999999999988764
No 248
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=2.9e-07 Score=78.18 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=53.8
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++.|||||++..++.++|.+.|.++|.+..+.+ . +.+|||+|.+.++|..|+..|+++..+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~--~--~~~afV~f~~~~~a~~A~~~l~g~~~~ 69 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDV--V--KDYAFVHMEKEADAKAAIAQLNGKEVK 69 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEE--C--SSCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEE--E--CCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 57899999999999999999999999766544333 2 559999999999999999999988764
No 249
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.40 E-value=4e-07 Score=80.43 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=54.2
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec------CCCceeeEEecChhhHHHHHHHhhhcc
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL------SCEGALLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl------~~r~~afVEF~s~edAa~Am~~lrg~R 401 (842)
...-++|||||++..++.|+|.+.|.++|.+....++.. .++++|||+|.+.|+|..|++.|+++.
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCC
Confidence 345679999999999999999999999986554444333 345689999999999999999999863
No 250
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.39 E-value=4.5e-07 Score=76.78 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=56.1
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC--CCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS--CEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~--~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++.|||||++..++.++|.+.|.++|.+..+.+..-. ++.+|||+|.+.++|..|+..|+++.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 74 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS 74 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3678999999999999999999999998766554443211 3568999999999999999999988764
No 251
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.39 E-value=4e-07 Score=78.95 Aligned_cols=68 Identities=18% Similarity=0.158 Sum_probs=55.9
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec--CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL--SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl--~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
...+++||||||+..++.|+|.+.|.++|.+-.+.+..- ..+.+|||+|.+.++|..|+..|+++.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 81 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 357999999999999999999999999876555433221 23568999999999999999999998764
No 252
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=3.6e-07 Score=84.73 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=54.8
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhc
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 400 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~ 400 (842)
..++++|||||++..++++||.+.|.+||.+-. ++.+.++++|||||++.++|..|++.+++.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~--v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~ 90 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQAFIEMNTEEAANTMVNYYTSV 90 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCE--EEEEGGGTEEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--EEEeCCCCEEEEEECCHHHHHHHHHHhccC
Confidence 367999999999999999999999999876655 444567899999999999999999988864
No 253
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.38 E-value=3.9e-07 Score=75.54 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=52.6
Q ss_pred cceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 339 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 339 s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
+++|||||++..++.++|.+.|.++|.+..+.+..- .++++|||+|.+.++|..|+..|++...+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 69 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 69 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC
Confidence 468999999999999999999999876554333211 12567999999999999999999988763
No 254
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=4.2e-07 Score=79.94 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=56.1
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++.|||||++..++.++|.+.|.++|.+-. ++...++++|||+|.+.++|..|+..|+++.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIME--IRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEE--EEEETTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--EEEeCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46889999999999999999999999765443 444566899999999999999999999988764
No 255
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=4.7e-07 Score=78.69 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=54.9
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++++||||||+..++.++|.+.|.++|.+..+.+..- .++++|||+|.+.++|..|+..|+++.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 91 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 91 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 46789999999999999999999999876655433221 12567999999999999999999998764
No 256
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=4.2e-07 Score=80.11 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=56.2
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCc----eeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY----MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~----~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+++.||||||+..++.|+|.+.|.++|.+..+ .+..-.++.+|||+|.+.++|..|+..|+++.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 93 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY 93 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 578999999999999999999999999887432 2222345678999999999999999999988764
No 257
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.38 E-value=3.7e-07 Score=89.51 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=50.0
Q ss_pred cCHHHHHHhccccCCcceEEEe----------cCCceEEEEecChHHHHHHHHHhcCCcce----EEEEec
Q 003170 266 ASEAHIRFQIDRFGPLEHFFFF----------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 322 (842)
Q Consensus 266 vtE~dL~~~F~rfGpIesV~~~----------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r 322 (842)
-.++||+++|++||.|.+|.+. ++|||+||+|.+.++|.+|++.|+|+.+. ++.|.+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3578999999999999999986 57899999999999999999999999754 555554
No 258
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=6.2e-07 Score=77.44 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=55.7
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++++|||||++..++.++|.+.|.++|.+..+.+..- ..+.+|||+|.+.++|..|++.|+++.++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD 80 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 367899999999999999999999999876655433211 13568999999999999999999988763
No 259
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.38 E-value=5.4e-07 Score=77.29 Aligned_cols=69 Identities=22% Similarity=0.184 Sum_probs=56.4
Q ss_pred cccccceEEEccCCCchhHHHHHHHHhhccccCCce-eeecC---CCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 335 AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYM-VTDLS---CEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 335 a~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~-~~dl~---~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
+...++.|||||++..+++++|.+.|.++|.+-.+. +++-. ++.+|||+|.+.++|..|++.|+++.++
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 346789999999999999999999999988776533 32212 2567999999999999999999988763
No 260
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.38 E-value=5.2e-07 Score=78.46 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=55.2
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeee----cCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d----l~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
...+++||||||+..++.|+|.+.|.++|.+-.+.+.. -.++.+|||+|.+.++|..|++.|+++..
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 36789999999999999999999999987665533321 12457899999999999999999998764
No 261
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.37 E-value=4.1e-07 Score=77.45 Aligned_cols=68 Identities=22% Similarity=0.168 Sum_probs=54.3
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCcee-eec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~-~dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++.|||||++..++++||.+.|.++|.+..+.+ ++- .++.+|||+|.+.++|..|++.|+++.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 356799999999999999999999999988765333 221 13467999999999999999999988763
No 262
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.37 E-value=4.3e-07 Score=79.17 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=54.2
Q ss_pred ccccceEEEccCCC-chhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 336 VGSCFHVYVGNIPN-QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 336 ~~~s~~LwVG~Iss-~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
..++++|||||++. .+++++|.+.|.++|.+..+.+ .+++|||+|++.++|..|+..|++...
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMN 82 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 35799999999998 9999999999999765554333 388999999999999999999998775
No 263
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.37 E-value=3e-07 Score=84.98 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=56.1
Q ss_pred cccceEEE--ccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 337 GSCFHVYV--GNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 337 ~~s~~LwV--G~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.++++||| ||++..+++|+|.+.|.++|.+.. +....++.++||+|++.+||..|+..|+|+..
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~--v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--LLMPPNKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEE--EECCTTCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEE--EEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 57899999 889999999999999999876644 34446789999999999999999999999864
No 264
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.37 E-value=4.1e-07 Score=80.14 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=54.7
Q ss_pred cccceEEEccCCCc-hhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~-~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++.||||+++.. +++|+|.+.|.++|.+..+.+ .+.+|||+|++.++|..|+..|++..++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~ 88 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLA 88 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34689999999999 999999999999876655444 6899999999999999999999988764
No 265
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.37 E-value=3.5e-07 Score=78.99 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=56.2
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceee-e---cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~-d---l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++.||||||+..++.++|.+.|.++|.+..+.+. + =..+.+|||+|.+.++|..|++.|+++.++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 80 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3679999999999999999999999998776554331 1 124678999999999999999999988764
No 266
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.37 E-value=4.2e-07 Score=81.36 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=53.0
Q ss_pred ccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC--CCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 338 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS--CEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 338 ~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~--~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+.+||||||+..+++|+|.+-|.++|.+-.+.+..-. ++++|||+|.+.|+|..|+..|+++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~ 71 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 71 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35689999999999999999999998766544332111 2458999999999999999999998764
No 267
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.37 E-value=3.4e-07 Score=86.06 Aligned_cols=107 Identities=9% Similarity=0.085 Sum_probs=55.3
Q ss_pred CceEEEEecChHHHHHHHHHhcCCcceEEEEeccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccc---c
Q 003170 290 KGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVY---K 366 (842)
Q Consensus 290 RGFAFVeF~~i~DA~~A~~~L~G~~~~RIrF~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~---~ 366 (842)
+|+.|-+|..++.+......+.... ...+.|..+.+.+-.....+.|||||++..+++|+|.+-|.++|. +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~------gg~~~g~g~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v 74 (136)
T 2hgl_A 1 MGSSHHHHHHSSGLVPRGSHMASMT------GGQQMGRGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGA 74 (136)
T ss_dssp ----------------------------------------CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSS
T ss_pred CccccccccchHHHHhhccCCCccc------CCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCce
Confidence 4788999999999998888877653 111111111122223356899999999999999999999999987 3
Q ss_pred CCceee-ec--CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 367 GPYMVT-DL--SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 367 g~~~~~-dl--~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
-.+.+. +- .++.+|||+|.+.++|..|++ ++++.++
T Consensus 75 ~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~ 113 (136)
T 2hgl_A 75 AGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG 113 (136)
T ss_dssp TTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS
T ss_pred eEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC
Confidence 333332 21 234579999999999999999 8887753
No 268
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.37 E-value=5.6e-07 Score=77.71 Aligned_cols=67 Identities=10% Similarity=0.105 Sum_probs=55.0
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCC--------ceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--------YMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~--------~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++++|||||++..++++||.+.|.++|.+.. +.+..- .++++|||+|.+.++|..|++.|+++..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 56899999999999999999999999887654 333221 12458999999999999999999998753
No 269
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=4.8e-07 Score=82.45 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=53.8
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 400 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~ 400 (842)
.++++|||||++..+++|||.+-|.+||.+-. ++.+.++++|||||++.++|..|++.+++.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~--v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~ 75 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQAFIEMNTEEAANTMVNYYTSV 75 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEE--EEEETTTTEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--EEEEcCCCEEEEEECCHHHHHHHHHHhccC
Confidence 57899999999999999999999999876655 444567999999999999999999988753
No 270
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=4.3e-07 Score=79.31 Aligned_cols=66 Identities=23% Similarity=0.296 Sum_probs=53.1
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccc-cCCceee--ec---CCCceeeEEecChhhHHHHHHHhh--hccc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVY-KGPYMVT--DL---SCEGALLMEFRTPEEATTAMAHLR--QHRK 402 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~-~g~~~~~--dl---~~r~~afVEF~s~edAa~Am~~lr--g~R~ 402 (842)
.++++|||||++..++.|+|.+.|.++|. +-.+.+. +- .++.+|||+|.+.++|..|++.|+ +...
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~ 79 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL 79 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee
Confidence 57899999999999999999999999865 4433222 10 467899999999999999999995 3554
No 271
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.36 E-value=5.7e-07 Score=76.54 Aligned_cols=68 Identities=16% Similarity=0.109 Sum_probs=55.2
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC---CCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS---CEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~---~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
...++.||||||+..++.++|.+.|.++|.+..+.+..-. ++.+|||+|.+.++|..|+..|+++..+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY 83 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3678999999999999999999999998765544332211 2458999999999999999999987753
No 272
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=6e-07 Score=77.47 Aligned_cols=68 Identities=10% Similarity=0.110 Sum_probs=55.4
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC---CCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS---CEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~---~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++++||||||+..++.|||.+.|.++|.+..+.+..-. ++++|||+|.+.++|..|++.|+++.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 84 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK 84 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3678999999999999999999999998766544332211 2368999999999999999999988764
No 273
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.35 E-value=5.7e-07 Score=79.42 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=56.7
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCcee-eecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~-~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++++|||||++..++.++|.+.|.++|.+-.+.+ ++-.++++|||+|.+.++|..|+..|+|...+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS 73 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 357899999999999999999999999876655433 23344678999999999999999999998864
No 274
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=4.4e-07 Score=78.68 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=54.9
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeee----cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d----l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+++.||||||+..++.++|.+.|.++|.+..+.+.. =.++.+|||+|.+.++|..|+..|+++..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD 81 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5689999999999999999999999987654433321 123568999999999999999999988764
No 275
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=5.1e-07 Score=78.01 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=53.8
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeee---cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d---l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++.||||||+..++.|+|.+.|.++|.+ .+.. -..+.+|||+|.+.++|..|+..|+++.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 79 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 4679999999999999999999999987544 2222 134678999999999999999999988764
No 276
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.35 E-value=6.6e-07 Score=78.92 Aligned_cols=63 Identities=19% Similarity=0.099 Sum_probs=53.0
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
..++.|||||++..++.|||.+.|.++|.+-.+.+ +.+ .+|||+|.+.++|..|++.|+++.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i--~~~-g~afV~f~~~~~a~~Ai~~l~g~~~ 75 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV--YRD-GTGVVEFVRKEDMTYAVRKLDNTKF 75 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEE--ETT-TEEEEEESSHHHHHHHHHHSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE--ecC-CEEEEEECCHHHHHHHHHHHCcCCc
Confidence 56899999999999999999999999765443322 333 8999999999999999999998765
No 277
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.35 E-value=7.7e-07 Score=78.62 Aligned_cols=67 Identities=16% Similarity=0.205 Sum_probs=55.0
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++||||||+..++.|+|.+.|.++|.+..+.+..- ..+.+|||+|.+.++|..|++.|+++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 83 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 57899999999999999999999999877655433221 11458999999999999999999987764
No 278
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.35 E-value=3.5e-07 Score=84.06 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=54.9
Q ss_pred cccceEEEccCCCc-hhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcc
Q 003170 337 GSCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 337 ~~s~~LwVG~Iss~-~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R 401 (842)
.++++|||||++.. ++.+||.+.|.+||.+-.+ +.+.++++|||||++.++|..|+..|++..
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v--~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~ 86 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNY--ILMRMKSQAFIEMETREDAMAMVDHCLKKA 86 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEE--EEETTTTEEEEECSSHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEE--EEecCCCEEEEEECCHHHHHHHHHHhccCC
Confidence 57999999999997 9999999999998766554 445789999999999999999999988654
No 279
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.35 E-value=4.4e-07 Score=79.84 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=52.2
Q ss_pred cceEEEccCCCchhHHHHHHHHhhccccCCceee-ec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 339 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 339 s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~-dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++||||||+..++.|||.+-|.++|.+-.+.+. +- .++++|||+|.+.++|..|++.|+|+..+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 87 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ 87 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4579999999999999999999998765443332 11 13447999999999999999999998763
No 280
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.34 E-value=9.8e-07 Score=77.70 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=55.4
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCc------eeeecCC------CceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY------MVTDLSC------EGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~------~~~dl~~------r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
...+++||||||+..++.|+|.+.|.++|.+-.+ .++.+.+ +.+|||+|.+.++|..|+..|+++.+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 4678999999999999999999999998776510 1232333 568999999999999999999988764
No 281
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.34 E-value=6e-07 Score=77.98 Aligned_cols=65 Identities=20% Similarity=0.121 Sum_probs=54.4
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCC-------CceeeEEecChhhHHHHHHHh-hhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC-------EGALLMEFRTPEEATTAMAHL-RQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~-------r~~afVEF~s~edAa~Am~~l-rg~R~e 403 (842)
..+++||||||+..++.++|.+.|.++|.+-.+.+ ..+ +.+|||+|.+.++|..|+..| +++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i--~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRL--PKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEC--CCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEE--ecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 67899999999999999999999999765544332 333 678999999999999999999 787764
No 282
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=6.9e-07 Score=76.93 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=54.2
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeee----cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d----l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
...+++||||||+..+++++|.+.|.++|.+-.+.+.. =.++.+|||+|.+.++|..|+. ++++.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 77 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM 77 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC
Confidence 46789999999999999999999999987654433321 1246789999999999999998 8887764
No 283
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.34 E-value=4.3e-07 Score=80.65 Aligned_cols=71 Identities=15% Similarity=0.104 Sum_probs=56.5
Q ss_pred cccccccceEEEccCCCchhHHHHH---HHHhhccccCCceeeec-------CCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 333 GVAVGSCFHVYVGNIPNQWAKDEIL---HESYKVVYKGPYMVTDL-------SCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 333 Gva~~~s~~LwVG~Iss~~~kEEi~---~E~~k~g~~g~~~~~dl-------~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.+.....+.|||||++..++.|+|. +.|.++|.+..+.+..- .++.+|||+|++.|+|..|++.|+++.+
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 3445678999999999999999999 88888776655433211 2235899999999999999999999886
Q ss_pred C
Q 003170 403 S 403 (842)
Q Consensus 403 e 403 (842)
+
T Consensus 89 ~ 89 (111)
T 2cpi_A 89 D 89 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 284
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.33 E-value=4.7e-07 Score=78.50 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=54.6
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++++||||||+..++.++|.+.|.++|.+..+.+..- .++.+|||+|.+.++|..|+..|+++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD 83 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 57899999999999999999999999876555433221 12347999999999999999999988764
No 285
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.33 E-value=6.1e-07 Score=77.89 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=54.3
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeee----cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d----l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++.||||||+..++.++|.+.|.++|.+-.+.+.. =.++.+|||+|.+.++|..|+..|++..++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY 83 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 5789999999999999999999999987654432211 113458999999999999999999987764
No 286
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=9.8e-07 Score=78.26 Aligned_cols=69 Identities=13% Similarity=0.045 Sum_probs=56.8
Q ss_pred cccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec--CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 335 AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL--SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 335 a~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl--~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
....++.|||||++..++.|+|.+.|.++|.+..+.+..- .++++|||+|++.++|..|++.|+++.++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3467899999999999999999999999877665433211 23678999999999999999999988763
No 287
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.31 E-value=7.1e-07 Score=78.00 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=54.7
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhh------hcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLR------QHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lr------g~R~e 403 (842)
.++++||||||+..++.|+|.+.|.++|.+..+.+..- .++.+|||+|.+.++|..|+..++ +..++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 57899999999999999999999999876544333211 246789999999999999999998 66653
No 288
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=5.9e-07 Score=77.66 Aligned_cols=67 Identities=24% Similarity=0.224 Sum_probs=55.2
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++|||||++..++.++|.+.|.++|.+-.+.+..- .++++|||+|.+.++|..|++.|+++...
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS 76 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 46789999999999999999999999876655433221 12568999999999999999999988764
No 289
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.30 E-value=7.6e-07 Score=80.02 Aligned_cols=67 Identities=9% Similarity=-0.049 Sum_probs=55.7
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceee-ec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~-dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+.++|||||++..+++++|.+.|.++|.+..+.+. +- .++.+|||+|++.|+|..|++.|+++..+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~ 74 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM 74 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 578999999999999999999999998776654332 21 23567999999999999999999998764
No 290
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.30 E-value=1e-06 Score=79.58 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=55.3
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeee----cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d----l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++.|||||++..+++|+|.+.|.++|.+..+.+.. -..+++|||+|.+.++|..|++.|+++.++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46799999999999999999999999987654433211 124678999999999999999999987653
No 291
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.30 E-value=1.2e-06 Score=78.62 Aligned_cols=68 Identities=15% Similarity=0.033 Sum_probs=56.3
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
...++.||||||+..++++||.+.|.++|.+-.+.+..- .++.+|||+|.+.++|..|+..|+++.++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 102 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD 102 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 467899999999999999999999999876654433221 14678999999999999999999998764
No 292
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.30 E-value=6.5e-07 Score=77.37 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=49.0
Q ss_pred cceEEEccCCCchhHHHHHHHHhhcc-ccCCcee-ee---cCCCceeeEEecChhhHHHHHHHhh
Q 003170 339 CFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLR 398 (842)
Q Consensus 339 s~~LwVG~Iss~~~kEEi~~E~~k~g-~~g~~~~-~d---l~~r~~afVEF~s~edAa~Am~~lr 398 (842)
|++|||+|+|..+++|||.+.|.++| .+-.+.+ ++ -.++++|||+|.+.|+|..|++.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~ 65 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ 65 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcC
Confidence 67999999999999999999999987 4444333 12 2456789999999999999998764
No 293
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.30 E-value=6.9e-07 Score=79.08 Aligned_cols=67 Identities=9% Similarity=0.109 Sum_probs=55.0
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+++.|||||++..++.|+|.+.|.++|.+..+.+..- .++.+|||+|.+.++|..|+..|+++.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 93 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG 93 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46799999999999999999999999877655433221 12357999999999999999999988764
No 294
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.29 E-value=4.9e-07 Score=77.25 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=53.5
Q ss_pred cccceEEEccCCCchhHHHHH----HHHhhccccCCceee-ecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEIL----HESYKVVYKGPYMVT-DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~----~E~~k~g~~g~~~~~-dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++++|||||++..++.|+|. +.|.++|.+..+.+. .-.++++|||+|.+.++|..|+..|+|+...
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 77 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 578999999999999999999 788776544432221 1135688999999999999999999988763
No 295
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.29 E-value=7.1e-07 Score=77.69 Aligned_cols=68 Identities=15% Similarity=0.007 Sum_probs=55.2
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++.|||||++..++.++|.+.|.++|.+..+.+..- .++.+|||+|.+.++|..|++.|+++.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 96 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD 96 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 367899999999999999999999999876644333221 23457999999999999999999988753
No 296
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.29 E-value=8.4e-07 Score=79.53 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=54.4
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCC------CceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC------EGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~------r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++++||||||+..++.++|.+.|.++|.+..+.+ ..+ +.+|||+|.+.++|..|++.|+++.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i--~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHL--NLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC--CBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--EecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 56889999999999999999999999765544322 222 668999999999999999999998864
No 297
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.28 E-value=7.1e-07 Score=79.18 Aligned_cols=67 Identities=9% Similarity=0.112 Sum_probs=54.7
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++||||||+..++.|||.+.|.++|.+..+.+..- .++.++||+|.+.++|..|++.|+++.++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 108 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG 108 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46899999999999999999999999876655333211 23568999999999999999999987753
No 298
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.28 E-value=1e-06 Score=77.21 Aligned_cols=67 Identities=19% Similarity=0.163 Sum_probs=54.5
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceee-ec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~-dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+++.|||||++..++.++|.+.|.++|.+..+.+. +- .++++|||+|.+.++|..|+..|+++.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 94 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 94 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 568999999999999999999999998765443331 11 12578999999999999999999998763
No 299
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.28 E-value=1.2e-06 Score=76.67 Aligned_cols=67 Identities=18% Similarity=0.118 Sum_probs=54.7
Q ss_pred cccceEEEccCCC------chhHHHHHHHHhhccccCCceee-ec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPN------QWAKDEILHESYKVVYKGPYMVT-DL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss------~~~kEEi~~E~~k~g~~g~~~~~-dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++|||||+|. .+++++|.+.|.++|.+-.+.+. +- .++.+|||+|.+.++|..|++.|+|+.++
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 4578999999999 99999999999998765543322 21 24678999999999999999999998764
No 300
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.28 E-value=7.4e-07 Score=75.75 Aligned_cols=64 Identities=14% Similarity=0.056 Sum_probs=54.7
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++.|||||++..++++||.+.|.++ .+..+.+ ..++.+|||+|.+.++|..|++.|+++..+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i--~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 66 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV--DRNKRTAFVTLLNGEQAQNAIQMFHQYSFR 66 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE--EGGGTEEEECCSCHHHHHHHHHHHTTEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE--eCCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 467899999999999999999999998 4444444 277889999999999999999999988764
No 301
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.28 E-value=1.2e-06 Score=75.78 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=53.4
Q ss_pred cccceEEEccCCCchhHHHHH----HHHhhccccCCceeeecCC---CceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEIL----HESYKVVYKGPYMVTDLSC---EGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~----~E~~k~g~~g~~~~~dl~~---r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
...+.|||||++..++.|+|. +.|.++|.+-.+ +...+ +.+|||+|.+.++|..|++.|+++..+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v--~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSV--ELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEE--EECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEE--EEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 467899999999999999999 888887655443 33322 778999999999999999999998764
No 302
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=8.7e-07 Score=76.00 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=53.3
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++.|||||++..++.++|.+.|.++|.+..+ +.+-....+|||+|.+.++|..|+. |+++.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~ 70 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLG 70 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEEC
Confidence 567899999999999999999999998766554 3332222389999999999999999 9988764
No 303
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.25 E-value=1.2e-06 Score=75.62 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=54.9
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeee---cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d---l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++.||||||+..++.++|.+.|.++|.+....+++ -.++.+|||+|.+.++|..|++ |+++.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~ 83 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF 83 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC
Confidence 5689999999999999999999999998764322222 2457899999999999999999 9988764
No 304
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.25 E-value=9.7e-07 Score=80.40 Aligned_cols=67 Identities=13% Similarity=0.054 Sum_probs=55.2
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++||||||+..+++|+|.+.|.++|.+..+.+..- .++.+|||+|.+.++|..|++.|++..+.
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 110 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 56899999999999999999999999876655433221 12568999999999999999999988764
No 305
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.25 E-value=1.5e-06 Score=78.24 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=54.8
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++.||||||+..++.++|..-|.++|.+-.+.+..- .++.+|||+|.+.++|..|++.|+++.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 74 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH 74 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46789999999999999999999999876654333221 13478999999999999999999988764
No 306
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=1.1e-06 Score=76.12 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=55.2
Q ss_pred cccceEEEccCCCchhHHHHHHHHhh-ccccCCceeeec---CCCceeeEEecChhhHHHHHHHhhhcc-cC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYK-VVYKGPYMVTDL---SCEGALLMEFRTPEEATTAMAHLRQHR-KS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k-~g~~g~~~~~dl---~~r~~afVEF~s~edAa~Am~~lrg~R-~e 403 (842)
.+++.|||||++..++.|+|.+.|.+ +|.+..+.+..- .++.+|||+|.+.++|..|++.|+++. ++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 78 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG 78 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC
Confidence 57899999999999999999999999 876655433211 135689999999999999999999887 64
No 307
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.24 E-value=1.3e-06 Score=77.59 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=54.9
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+++.|||||++..++.++|.+.|.++|.+-.+.+..- .++++|||+|.+.++|..|++.++++.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 57899999999999999999999999876654433221 12458999999999999999999998764
No 308
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.24 E-value=8.5e-07 Score=75.80 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=53.8
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+++.|||||++..++.++|.+.|.++|.+..+ -..-.++++|||+|.+.++|..|+..|+++.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 79 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 79 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 578999999999999999999999997654332 111234568999999999999999999987764
No 309
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.24 E-value=1.5e-06 Score=77.93 Aligned_cols=64 Identities=17% Similarity=0.079 Sum_probs=51.4
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++.||||||+..+++|+|.+.|.++|.+-.+ ..+.+ .+|||+|++.++|..|++.|+++.++
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~--~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~ 77 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYA--DVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFR 77 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEE--EECTT-SEEEEEESSHHHHHHHHHHHTTCBCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEE--EEecC-CEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 457899999999999999999999987654432 22333 89999999999999999999988764
No 310
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.24 E-value=1.1e-06 Score=77.79 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=52.2
Q ss_pred cccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC------CCceeeEEecChhhHHHHHHHhhh
Q 003170 335 AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS------CEGALLMEFRTPEEATTAMAHLRQ 399 (842)
Q Consensus 335 a~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~------~r~~afVEF~s~edAa~Am~~lrg 399 (842)
....+++||||||+..++.|+|.+.|.++|.+-.+ +.+. ++.+|||+|.+.++|..|++.+++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v--~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~ 81 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEA--VVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 81 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEE--EESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEE--EEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC
Confidence 34679999999999999999999999998665443 3233 345899999999999999998886
No 311
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.23 E-value=1.4e-06 Score=80.28 Aligned_cols=68 Identities=9% Similarity=-0.059 Sum_probs=56.3
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++.||||||+..++.++|.+.|.++|.+..+.+..- ..+.+|||+|.+.++|..|+..|+++.++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~ 114 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 114 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 367999999999999999999999999876655433211 34668999999999999999999998764
No 312
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.23 E-value=1.3e-06 Score=79.57 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=55.0
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhcc-ccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g-~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
...+.|||||++..++.|+|.+-|.++| .+..+.+..-.++++|||+|++.|||..|++.|+++.++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~ 93 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR 93 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5678999999999999999999999987 343333321146889999999999999999999988764
No 313
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=8.4e-07 Score=79.12 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=51.9
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec------CCCceeeEEecChhhHHHHHHHh---hhcc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL------SCEGALLMEFRTPEEATTAMAHL---RQHR 401 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl------~~r~~afVEF~s~edAa~Am~~l---rg~R 401 (842)
..+++|||||++..+++|+|.+.|.++|.+....+.+- .++.+|||+|++.++|..|++.| +|+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~ 79 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKL 79 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcE
Confidence 56899999999999999999999999876552111111 34678999999999999999988 5554
No 314
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=1.9e-06 Score=73.57 Aligned_cols=66 Identities=9% Similarity=0.037 Sum_probs=53.3
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCce--eeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGA--LLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~--afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++|||||++..++.++|.+-|.++|.+..+. ....++.. |||+|.+.++|..|+..|+++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~-~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~ 80 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCE-QVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE 80 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEE-EECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEE-EeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4589999999999999999999999976554431 12333333 999999999999999999998864
No 315
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.22 E-value=1.4e-06 Score=76.60 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=54.0
Q ss_pred cccceEEEccCCCch------hHHHHHHHHhhccccCCceeeec--CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQW------AKDEILHESYKVVYKGPYMVTDL--SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~------~kEEi~~E~~k~g~~g~~~~~dl--~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++.|||||++..+ ++++|.+.|.++|.+-.+.+..- .++++|||+|.+.++|..|+..|+|+..+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 457899999999988 77999999998766554433311 34678999999999999999999998764
No 316
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=1.5e-06 Score=76.65 Aligned_cols=67 Identities=10% Similarity=0.117 Sum_probs=55.3
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++|||||++..++.|+|.+.|.++|.+..+.+..- .++.+|||+|.+.++|..|+..|+++.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 92 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIK 92 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 56899999999999999999999999876655433221 12457999999999999999999998874
No 317
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.20 E-value=1.3e-06 Score=74.61 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=49.5
Q ss_pred ceEEEccCCCchhHHHHHHHHhhcc--ccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 340 FHVYVGNIPNQWAKDEILHESYKVV--YKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 340 ~~LwVG~Iss~~~kEEi~~E~~k~g--~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+|||||++..++.|+|.+.|.++| .+-.+.+..- .++++|||+|.+.++|..|++.|+|+..+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~ 71 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 71 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 3799999999999999999999988 4444333221 23457999999999999999999998764
No 318
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.19 E-value=1.8e-06 Score=72.46 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=53.4
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++|||||++..++.++|.+.|.++|.+..+.+..- .++.+|||+|.+.++|..|+ .++++..+
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~ 73 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR 73 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 45789999999999999999999999876554433221 22568999999999999999 89988763
No 319
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=1.6e-06 Score=75.40 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=53.3
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceee-e----cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~-d----l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++.||||||+..+++|+|.+.|.++| +-.+.+. + =.++.+|||+|.+.++|..|+ .|+++.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 82 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 82 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 36789999999999999999999999987 4443322 1 123568999999999999999 89887753
No 320
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.18 E-value=1.7e-06 Score=76.43 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=53.4
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeee----cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d----l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++.||||||+..++.++|.+.|.++|.+-.+.+.. =..+.+|||+|.+.++|..|+ .|+++.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 92 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL 92 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC
Confidence 4578999999999999999999999987654433321 124568999999999999999 99988763
No 321
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=1.7e-06 Score=75.26 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=54.1
Q ss_pred cccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 335 AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 335 a~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.....+.||||||+..++.|+|.+.|.++|.+-.+.+..- .++.+|||+|++.++|..|+.. +++.++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD 83 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 3467899999999999999999999999876555433221 1235899999999999999998 777654
No 322
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.18 E-value=1.6e-06 Score=72.82 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=48.7
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHH
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAH 396 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~ 396 (842)
.+++.|||||++..++.++|.+.|.++|.+..+.+..- .++.+|||+|.+.++|..|++.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 57899999999999999999999999876555433221 1245799999999999999976
No 323
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=2.4e-06 Score=74.06 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=48.9
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHH
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAH 396 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~ 396 (842)
..++++||||||+..+++++|.+.|.++|.+-.+.+..- .++.+|||+|.+.++|..|+..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 467899999999999999999999999866544333221 1234899999999999999985
No 324
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.17 E-value=1.9e-06 Score=80.32 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=54.8
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC----CCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS----CEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~----~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++++||||||+..++.|+|.+.|.++|.+-.+.+..-. ++.+|||+|.+.++|..|+..|+++.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 107 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD 107 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 478999999999999999999999998766554332211 2358999999999999999999988763
No 325
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.16 E-value=2e-06 Score=70.33 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=50.3
Q ss_pred ceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 340 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 340 ~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
++|||||++..++.++|.+.|.++|.+..+.+..- .++++|||+|.+.++|..|+..++ ...
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~ 66 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL 66 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc
Confidence 57999999999999999999999877665444221 225689999999999999999887 444
No 326
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=2e-06 Score=74.30 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=51.8
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceee-ec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~-dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++++||||||+..+++++|.+.|.++ +.+.+. +- .++.+|||+|.+.++|..|+..|+++.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 3678999999999999999999988865 332222 21 12368999999999999999999998764
No 327
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.15 E-value=1.2e-06 Score=76.15 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=51.0
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec-----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL-----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl-----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
...++|||||++..+++++|.+.|.++| +..+.+..- .++++|||+|.+.++|..|+ .|+++.++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~ 86 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 86 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 5689999999999999999999999988 544333211 13568999999999999999 89987763
No 328
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.14 E-value=2.1e-06 Score=74.59 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=52.1
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCC------CceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC------EGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~------r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++.|||||++..+++|+|.+.|.++| +-. +..+.+ +.+|||+|.+.++|..|+ .|++..++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 81 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRS--VRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG 81 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEE--EEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceE--EEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC
Confidence 36789999999999999999999999985 333 333333 348999999999999999 89987763
No 329
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.13 E-value=2.3e-06 Score=88.05 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=56.2
Q ss_pred cccceEEEccCCCch---------hHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 337 GSCFHVYVGNIPNQW---------AKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~---------~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
..+++||||+|+..+ ++|+|...|.++|-+.. ++.+.++++|||+|.+.++|..|++.|+++.+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~--v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDR--IRYVESKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEE--EEEEGGGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEE--EEEECCCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 679999999999988 78999999998766554 55567899999999999999999999999886
No 330
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.13 E-value=2.1e-06 Score=78.95 Aligned_cols=68 Identities=10% Similarity=0.057 Sum_probs=56.9
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCc------ee---eecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY------MV---TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~------~~---~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++.|||||++..++.++|.+.|.++|.+..+ .+ ..-.++++|||+|.+.++|..|+..|+++.+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3678999999999999999999999998866542 12 23356778999999999999999999998864
No 331
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=3.2e-06 Score=75.23 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=53.1
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeee---cCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD---LSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d---l~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
....++|||||++..++.|+|.+.|.++|.+-.+.+.. =.++++|||+|.+.++|..|+. +++...
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~ 76 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKY 76 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEE
Confidence 35689999999999999999999999987654433322 1257789999999999999998 776654
No 332
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.11 E-value=3.5e-06 Score=72.59 Aligned_cols=63 Identities=11% Similarity=-0.020 Sum_probs=53.5
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++++|||||. .+++|+|.+.|.++|.+..+.+ ..++.+|||+|.+.++|..|+..|+++.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i--~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 75 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM--DPPRNCAFVTYEKMESADQAVAELNGTQVE 75 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE--ETTTTEEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe--cCCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 56899999996 7889999999999876655433 477899999999999999999999988764
No 333
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.11 E-value=2.9e-06 Score=77.33 Aligned_cols=63 Identities=16% Similarity=0.102 Sum_probs=53.2
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCC--ceeee----cCCCceeeEEecChhhHHHHHHHhhhc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--YMVTD----LSCEGALLMEFRTPEEATTAMAHLRQH 400 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~--~~~~d----l~~r~~afVEF~s~edAa~Am~~lrg~ 400 (842)
..+++|||||++..++.|+|.+.|.++|.+.. +.+.. =.+++++||+|.+. ||..|+..|+++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 57899999999999999999999999987754 33321 12457899999999 999999999998
No 334
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.11 E-value=1.7e-06 Score=73.08 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=51.5
Q ss_pred ceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 340 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 340 ~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
++|||||++..++.++|.+.|.++|.+..+.+..- .++++|||+|.+.+ |..|+..|+++..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~ 68 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM 68 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC
Confidence 58999999999999999999999876655433211 23668999999999 99999999988764
No 335
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.09 E-value=3.8e-06 Score=78.01 Aligned_cols=67 Identities=15% Similarity=0.049 Sum_probs=51.2
Q ss_pred cccceEEEccCCCchhHHHHHH----HHhhccccCCcee-eecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILH----ESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~----E~~k~g~~g~~~~-~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++++|||||++..++.++|.. -|.++|.+-.+.+ +.-.++++|||+|.+.++|..|+..|+|+...
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~ 98 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ 98 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 5789999999999998888764 4555544432222 11256789999999999999999999998763
No 336
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.08 E-value=4.5e-06 Score=74.81 Aligned_cols=64 Identities=16% Similarity=0.044 Sum_probs=55.7
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
-.+.-|||||++.+++.++|.+=|+++|-+-. +....++.++||||.+.+||..|++.||+...
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~--~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l 68 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVS--FHPYLNQGIALCKYTTREEANKAQMALNNCVL 68 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEE--EEEETTTTEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEE--EEEcCCCcEEEEEECCHHHHHHHHHHhcCCEE
Confidence 45789999999999999999999999655544 55566899999999999999999999998775
No 337
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.08 E-value=4.5e-06 Score=75.31 Aligned_cols=67 Identities=10% Similarity=0.130 Sum_probs=53.6
Q ss_pred cccccceEEEccCCCchhHHHHHHHHhhccccCC-ceeeecC-----CCceeeEEecChhhHHHHHHHhhhccc
Q 003170 335 AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YMVTDLS-----CEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 335 a~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~-~~~~dl~-----~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.....+.|||||++..+++|||.+.|.++|..+. ..++.+. ++.+|||+|.+.++|..|++ ++++.+
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 3467899999999999999999999999988543 2222222 24579999999999999999 888765
No 338
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.07 E-value=3.5e-06 Score=90.74 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=56.7
Q ss_pred ccccceEEEcc--CCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 336 VGSCFHVYVGN--IPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 336 ~~~s~~LwVG~--Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
..++++||||| ++..+++|+|.+.|.++|.+.. ++...+++++||+|++.|||..||+.|+|+..
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~--v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--LLMPPNKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEE--EECCTTCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEE--EEEeCCCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 47899999998 5788999999999999876643 44456899999999999999999999999886
No 339
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.06 E-value=3.7e-06 Score=68.75 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=48.9
Q ss_pred eEEEccCCCchhHHHHHHHHhhccccCCceeee----cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 341 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 341 ~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d----l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.|||||++..++.|+|...|.++|.+-.+.+.. =.++.+|||+|.+.++|..|++ ++++.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~ 66 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN 66 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC
Confidence 489999999999999999999987665533321 1235689999999999999987 7776653
No 340
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.06 E-value=3.9e-06 Score=79.97 Aligned_cols=66 Identities=9% Similarity=0.035 Sum_probs=51.8
Q ss_pred ccceEEEccCCCchhHHHHHHHHhhcc--ccCCceee-ec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 338 SCFHVYVGNIPNQWAKDEILHESYKVV--YKGPYMVT-DL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 338 ~s~~LwVG~Iss~~~kEEi~~E~~k~g--~~g~~~~~-dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+.|||||++..+++|+|.+.|.++| .+-.+.+. +- .+++++||+|.+.++|..|+..|+++.++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 568999999999999999999999987 44333321 11 12458999999999999999999988764
No 341
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.05 E-value=1.8e-06 Score=74.68 Aligned_cols=66 Identities=12% Similarity=0.049 Sum_probs=52.5
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec---CCCceeeEEecChhhHHHHHH---Hhhhccc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL---SCEGALLMEFRTPEEATTAMA---HLRQHRK 402 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl---~~r~~afVEF~s~edAa~Am~---~lrg~R~ 402 (842)
..++.|||||++..++.|+|.+.|.++|.+-.+.+..- .++++|||+|.+.++|..|+. .++|+++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l 78 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKL 78 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEEE
Confidence 46899999999999999999999999876544333221 135789999999999999999 6776665
No 342
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.03 E-value=6e-06 Score=70.03 Aligned_cols=66 Identities=12% Similarity=0.188 Sum_probs=51.8
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCC---CceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC---EGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~---r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
....+.|||||++..++.+||.+.|.++ .+..+.+..-.. +.+|||+|.+.++|..|+. ++++.+.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~ 75 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG 75 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC
Confidence 3568999999999999999999999997 333332221122 4579999999999999999 9987763
No 343
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.03 E-value=4.6e-06 Score=75.21 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=54.3
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCC-ceeeecC---CCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YMVTDLS---CEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~-~~~~dl~---~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
...+.|||||++..++.++|.+.|.++|.+.. +.+.+-. ++.+|||+|.+.++|..|+. ++++.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 92 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG 92 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 56789999999999999999999999887765 3343322 24579999999999999999 8887753
No 344
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.02 E-value=7.6e-06 Score=72.18 Aligned_cols=66 Identities=14% Similarity=0.186 Sum_probs=53.7
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCC-ceeeecC-----CCceeeEEecChhhHHHHHHHhhhccc
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YMVTDLS-----CEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~-~~~~dl~-----~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
....+.|||||++..+++|+|.+-|..+|..|. ..+..+. ++.+|||+|.+.++|..|+. ++++.+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~ 79 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYM 79 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCccee
Confidence 357889999999999999999999999888553 2333332 35589999999999999999 887665
No 345
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.02 E-value=5.9e-06 Score=80.90 Aligned_cols=66 Identities=14% Similarity=0.035 Sum_probs=55.1
Q ss_pred ccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 338 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 338 ~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
....|||||++..+++|+|...|.++|.+..+.+..-..+.+|||||++.++|..|++.|+|+.+.
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~ 110 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 110 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 356689999999999999999999988776655433234558999999999999999999999873
No 346
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.01 E-value=7.6e-06 Score=79.29 Aligned_cols=68 Identities=15% Similarity=0.031 Sum_probs=55.7
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeee---cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d---l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++++||||||+..++.++|.+.|.++|.+-.+.+.. =.++.+|||+|.+.++|..|++.++++.++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 155 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD 155 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 36789999999999999999999999987665443322 123578999999999999999999988764
No 347
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.01 E-value=2.8e-06 Score=75.96 Aligned_cols=66 Identities=14% Similarity=0.060 Sum_probs=53.1
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeee----cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d----l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+++||||||+..++.|+|.+.|.++|.+..+.+.. =.++.+|||+|.+.++|..|+ .|+++.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 103 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR 103 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 3589999999999999999999999987665433321 123568999999999999999 78887764
No 348
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=4.4e-06 Score=74.00 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=52.0
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
...+.|||||++..+++++|.+.|.++|.+-.+.+..- .++.+|||+|.+.++|..|+.. +++.+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~ 93 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI 93 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE
Confidence 45799999999999999999999999876655433221 1356899999999999999987 66554
No 349
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.01 E-value=2.8e-06 Score=80.18 Aligned_cols=103 Identities=16% Similarity=0.033 Sum_probs=49.6
Q ss_pred CceEEEEecChHHHHHHHHHhcCCcceEEEEeccccCCccc--cccccccccceEEEccCCCchhHHHHHHHHhhccccC
Q 003170 290 KGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTKGV--INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKG 367 (842)
Q Consensus 290 RGFAFVeF~~i~DA~~A~~~L~G~~~~RIrF~r~~lGsrg~--~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g 367 (842)
.|+||-+|+-..-+..|+..+.... ...+.|..+. -........+.|||||++..+++|||.+.|.++|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~------gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~- 73 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASMT------GGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV- 73 (139)
T ss_dssp --------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCCCS-
T ss_pred CCcccccccCccccchhcccchhcc------CCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-
Confidence 4789999999999998888877652 1111111110 011122467899999999999999999999998732
Q ss_pred CceeeecC-----CCceeeEEecChhhHHHHHHHhhhccc
Q 003170 368 PYMVTDLS-----CEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 368 ~~~~~dl~-----~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.++.+. ++.+|||+|++.|||..|+ .++++.+
T Consensus 74 --~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l 110 (139)
T 2hgn_A 74 --RVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANM 110 (139)
T ss_dssp --EEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSS
T ss_pred --EEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEE
Confidence 333332 3568999999999999998 6666554
No 350
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.00 E-value=5.5e-06 Score=71.40 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=45.3
Q ss_pred ccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHH
Q 003170 334 VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATT 392 (842)
Q Consensus 334 va~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~ 392 (842)
.+..+.++|||||++..++.|+|.+.|.++|.+-.+.+.. .++++|||+|++.++|..
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~-~srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK-PFRAFAFVTFADDKVAQS 63 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS-SCCSEEEEEESCHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee-CCCCEEEEEECCHHHHHH
Confidence 3457889999999999999999999999987766544432 368999999999999873
No 351
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=4.5e-06 Score=70.53 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=45.7
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHH
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTA 393 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~A 393 (842)
..+++|||||++..++.|+|.+.|.++|.+-.+.+.. .++++|||+|.+.++|..|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK-PFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS-SCCSCCEEECSCHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec-CCCCEEEEEECCHHHHHHH
Confidence 4689999999999999999999999987665543321 3588999999999999654
No 352
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.98 E-value=5.5e-06 Score=73.62 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=48.2
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeee----cCCCceeeEEecChhhHHHHHHHhh
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAHLR 398 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d----l~~r~~afVEF~s~edAa~Am~~lr 398 (842)
..++.|||||++..+++++|.+.|.++|.+..+.+.. =.++++|||+|.+.++|..|+..++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 4688999999999999999999999987665543321 1235689999999999999998653
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.97 E-value=1.1e-05 Score=73.47 Aligned_cols=63 Identities=11% Similarity=-0.020 Sum_probs=54.5
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++++|||||. .++.|+|...|.++|.+-.+.+ ..++++|||+|++.++|..|+..|++..++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i--~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 99 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM--DPPRNCAFVTYEKMESADQAVAELNGTQVE 99 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE--ETTTTEEEEECSSHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE--eCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 57899999996 5889999999999887766544 478899999999999999999999988764
No 354
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.96 E-value=1e-05 Score=72.86 Aligned_cols=69 Identities=12% Similarity=0.088 Sum_probs=54.1
Q ss_pred CCCCeEEecCCCC----ccC----HHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEE
Q 003170 252 SASKQLWLGSFGP----EAS----EAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVK 319 (842)
Q Consensus 252 s~Sr~LwVGnL~~----dvt----E~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIr 319 (842)
++.-++.|-..+. +.. -.+|.+.|..||.|.+++|...+ +||+|++.+.|.+|++ |+|..++ +|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 4455666665542 222 37899999999999999999877 8999999999999999 9999887 555
Q ss_pred Eecc
Q 003170 320 FMDV 323 (842)
Q Consensus 320 F~r~ 323 (842)
.+.+
T Consensus 82 lkt~ 85 (91)
T 2dnr_A 82 LKSP 85 (91)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 5443
No 355
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.96 E-value=6.3e-06 Score=73.45 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=52.6
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhcccc-CCceee-e--cCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYK-GPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~-g~~~~~-d--l~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
...+.|||||++..+++++|.+-|.++|.+ ..+.+. + =.++.+|||+|.+.|+|..|+.. +++.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~ 81 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKL 81 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCcc
Confidence 568899999999999999999999998777 443332 1 12567899999999999999876 76654
No 356
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.19 E-value=1.1e-06 Score=77.98 Aligned_cols=67 Identities=10% Similarity=0.103 Sum_probs=54.5
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCC--------ceeee----cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--------YMVTD----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~--------~~~~d----l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+++.|||||++..+++++|.+.|.++|.+.. +.+.. -.++.+|||+|.+.++|..|++.|+++.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 46889999999999999999999999887654 32211 123568999999999999999999988764
No 357
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.92 E-value=1.2e-05 Score=75.97 Aligned_cols=70 Identities=14% Similarity=0.011 Sum_probs=53.3
Q ss_pred cccccccceE--EEccCCCchhHHHHHHHHhhccccCCceeeecCCCce-eeEEecChhhHHHHHHHhhhcccC
Q 003170 333 GVAVGSCFHV--YVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGA-LLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 333 Gva~~~s~~L--wVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~-afVEF~s~edAa~Am~~lrg~R~e 403 (842)
|+...+++.| ||||++-.++.|+|.+-|.++|.+-.+.+.. ..+.. |||||++.++|..||+.|+|+-+.
T Consensus 20 ~~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~-~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~ 92 (130)
T 3zzy_A 20 MAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIY 92 (130)
T ss_dssp -----CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHHTTCEEE
T ss_pred cccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHcCCCeec
Confidence 4445566655 5999999999999999999988776653332 33556 999999999999999999998874
No 358
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.90 E-value=1.5e-05 Score=69.98 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=51.5
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCC-cee-ee--cCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~-~~~-~d--l~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
...+.|||||++..++.++|.+-|.++|.+.. +.+ ++ =.++.+|||+|.+.++|..|+.. +++.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~ 81 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERI 81 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccchh
Confidence 56899999999999999999999999876543 322 12 12456899999999999999986 66554
No 359
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.90 E-value=1.5e-05 Score=74.31 Aligned_cols=64 Identities=16% Similarity=0.033 Sum_probs=53.1
Q ss_pred ccce--EEEccCCCchhHHHHHHHHhhccccCCceeeecCCCce-eeEEecChhhHHHHHHHhhhcccC
Q 003170 338 SCFH--VYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGA-LLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 338 ~s~~--LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~-afVEF~s~edAa~Am~~lrg~R~e 403 (842)
+++. |||||++-.++.|+|...|.++|.+-.+.+.. . .+. |||||++.++|..||+.|+|+.+.
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~ 88 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-NGIQAMVEFESVLCAQKAKAALNGADIY 88 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-SSEEEEEEESSHHHHHHHHHHHTTCCCB
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-CCCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 4544 68999999999999999999988776654433 2 364 999999999999999999999874
No 360
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.86 E-value=1.2e-05 Score=65.61 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=47.5
Q ss_pred eEEEccCCCchhHHHHHHHHhhccccCCceeee----cCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 341 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 341 ~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d----l~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
+|||||++..++.|+|.+-|.++|.+..+.+.. =.++++|||+|.+.++|..|++. ++..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~ 65 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV 65 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE
Confidence 489999999999999999999987665433321 12467899999999999999874 44443
No 361
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=1.9e-05 Score=69.76 Aligned_cols=64 Identities=20% Similarity=0.125 Sum_probs=50.6
Q ss_pred cccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCC-----CceeeEEecChhhHHHHHHHhhhccc
Q 003170 335 AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC-----EGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 335 a~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~-----r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.....+.|||||++..+++|||.+-|.++|.. .++.+.+ +.+|||+|.+.|+|..|+. ++++.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~---~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~ 79 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM---RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANM 79 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS---EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce---EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeE
Confidence 34678999999999999999999999998743 3333322 3479999999999999995 676654
No 362
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.85 E-value=9.5e-06 Score=81.58 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=51.5
Q ss_pred ccceEEEccCCCchhHHHHHHHHhhcc--ccCCceeeec----CCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 338 SCFHVYVGNIPNQWAKDEILHESYKVV--YKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 338 ~s~~LwVG~Iss~~~kEEi~~E~~k~g--~~g~~~~~dl----~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
..++|||||++..+++++|.+.|.++| .+-.+.|..- .++.++||+|.+.++|..||+.|+++.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~ 137 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL 137 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE
Confidence 567899999999999999999999988 4444333221 1345799999999999999999998875
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.81 E-value=4.5e-05 Score=67.86 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=54.4
Q ss_pred cccceEEEccCCCchh-----------HHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWA-----------KDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~-----------kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++++|+|.|+-.... +|+|.++|.++|.+-.+.+.+-.++.++||+|.+.++|..|+..|+|+..+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 6799999999954432 578888999887776665544456789999999999999999999998764
No 364
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.81 E-value=1.7e-05 Score=72.07 Aligned_cols=67 Identities=7% Similarity=0.015 Sum_probs=56.5
Q ss_pred ccccCCCCCeEEecCCCCc-----cCH----HHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 247 AMDIFSASKQLWLGSFGPE-----ASE----AHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 247 ~~~v~s~Sr~LwVGnL~~d-----vtE----~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
....-++.-++.|-.++++ ... .+|.+.|..||.|..|+|...| +||+|++-++|.+|++ |+|..++
T Consensus 8 i~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 8 SSFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp SCCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEET
T ss_pred ceecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeC
Confidence 3455677788888888643 222 6799999999999999999988 9999999999999999 9999876
No 365
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.73 E-value=5.4e-05 Score=67.92 Aligned_cols=68 Identities=18% Similarity=0.111 Sum_probs=54.5
Q ss_pred ccccceEEEccCCCc-----hhHHHHHHHHhhccccCCceeeec-----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQ-----WAKDEILHESYKVVYKGPYMVTDL-----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~-----~~kEEi~~E~~k~g~~g~~~~~dl-----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++++|+|.|+-.. -.+|+|.++|.++|.+-.+.+..- .++..+||+|.+.++|..|+..|+|+..+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 368999999999742 367899999999887766554331 34678999999999999999999998753
No 366
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.66 E-value=6.3e-05 Score=68.42 Aligned_cols=63 Identities=14% Similarity=0.296 Sum_probs=50.1
Q ss_pred cccce-EEEccCCCchhHHHHHHHHhhccccCCc--eeeecCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 337 GSCFH-VYVGNIPNQWAKDEILHESYKVVYKGPY--MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 337 ~~s~~-LwVG~Iss~~~kEEi~~E~~k~g~~g~~--~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.+|.+ |||+|++-.++.|+|-+.++.+ |+++ .+.++. ...|||+|.+.|+|.+|++.|+|+-.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~l--F~~yGG~Vl~Vt-gG~AfV~F~~~esA~~A~~~l~G~~l 71 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRL--SDNCGGKVLSIT-GCSAILRFINQDSAERAQKRMENEDV 71 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHH--HHTTTCCEEECC-TTCEEEEESSHHHHHHHHHHHTTCCS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHH--HHHcCCeeEEEe-cCEEEEEECCHHHHHHHHHHhcCCcc
Confidence 56777 9999999999988877666543 3333 255553 48899999999999999999999775
No 367
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.61 E-value=4.8e-05 Score=70.33 Aligned_cols=65 Identities=14% Similarity=0.070 Sum_probs=50.3
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhcccc-C---Cceee-ec--CCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYK-G---PYMVT-DL--SCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~-g---~~~~~-dl--~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
...+.|||||++-.+++|+|.+.|.++|.+ | .+.+. +- .++.+|||+|.+.|||..|+.. +++.+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 456899999999999999999999999865 2 23222 21 1345799999999999999985 65544
No 368
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.52 E-value=9.8e-05 Score=68.83 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=48.8
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec-----CCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL-----SCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl-----~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
...+.|||||++..+++|+|.+-|..++... ..++.. .++.+|||+|.+.|||..|++. +++.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~-~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l 108 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLEIVP-NGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERI 108 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSCEEE-EEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCcee-eEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEE
Confidence 4578999999999999999999999974331 023323 2467899999999999999984 44433
No 369
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.50 E-value=0.00013 Score=65.95 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=49.0
Q ss_pred ccceEEEccCCCchhHHHHHHHHhhccccCCceeeec-----CCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 338 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL-----SCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 338 ~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl-----~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
..+.|||||++..++.|+|.+-|..+ .+- .++.. .++.+|||+|.+.+||..|+ .++++.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~--~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~ 80 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVD--AVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLM 80 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCC--EEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-Cee--EEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeE
Confidence 46899999999999999999999987 332 33333 24678999999999999999 5777665
No 370
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=97.42 E-value=9.9e-05 Score=72.30 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=49.5
Q ss_pred ccceEEEccCCCchhHHHHHHHHhhccccCCceeeec---CCCceeeEEecChhhHHHHHHHhh
Q 003170 338 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL---SCEGALLMEFRTPEEATTAMAHLR 398 (842)
Q Consensus 338 ~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl---~~r~~afVEF~s~edAa~Am~~lr 398 (842)
.+++|||||++..++.|+|.+-|.++|.+-.+.+..- ..+++|||||++.++|..|+..++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC
Confidence 4789999999999999999999999876655433321 245789999999999999998654
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.14 E-value=0.00069 Score=62.06 Aligned_cols=70 Identities=19% Similarity=0.094 Sum_probs=51.9
Q ss_pred ccccccceEEEccCCCc----------hhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 334 VAVGSCFHVYVGNIPNQ----------WAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 334 va~~~s~~LwVG~Iss~----------~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
+...+++.|.+-|+=.. -.+|+|.+||.++|.+..+.+..-..++.+||+|.+.++|..|+..|+|+..+
T Consensus 2 ~~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 2 VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34457788888887553 23567788888887776544433234688999999999999999999998753
No 372
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.07 E-value=0.00084 Score=60.05 Aligned_cols=67 Identities=13% Similarity=0.100 Sum_probs=51.0
Q ss_pred cccceEEEccCCCc--h--------hHHHHHHHHhhccccCCceeeec------CCCceeeEEecChhhHHHHHHHhhhc
Q 003170 337 GSCFHVYVGNIPNQ--W--------AKDEILHESYKVVYKGPYMVTDL------SCEGALLMEFRTPEEATTAMAHLRQH 400 (842)
Q Consensus 337 ~~s~~LwVG~Iss~--~--------~kEEi~~E~~k~g~~g~~~~~dl------~~r~~afVEF~s~edAa~Am~~lrg~ 400 (842)
++|+.|.+-|+-.. . .+|+|.+||.++|.+..+.+..- .++..+||+|.+.++|..|+..|+|+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 68899999998442 2 34789999998877655433211 24678999999999999999999998
Q ss_pred ccC
Q 003170 401 RKS 403 (842)
Q Consensus 401 R~e 403 (842)
..+
T Consensus 83 ~f~ 85 (105)
T 3v4m_A 83 KFA 85 (105)
T ss_dssp EET
T ss_pred EeC
Confidence 753
No 373
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=96.90 E-value=0.0013 Score=60.58 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=50.6
Q ss_pred cccceEEEccCCCc-----hhHHHHHHHHhhccccCCceeeec-C-------CCceeeEEecChhhHHHHHHHhhhccc
Q 003170 337 GSCFHVYVGNIPNQ-----WAKDEILHESYKVVYKGPYMVTDL-S-------CEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 337 ~~s~~LwVG~Iss~-----~~kEEi~~E~~k~g~~g~~~~~dl-~-------~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.+++.|++.|+-.. -.+|||.+||.++|.+-.+.|..- . ++..+||+|.+.++|..|+..|+|+..
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 47999999998543 246889999999877665433221 1 125799999999999999999999875
No 374
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.80 E-value=0.002 Score=59.49 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=59.4
Q ss_pred CCeEEecCCCCccC-----HHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEecc
Q 003170 254 SKQLWLGSFGPEAS-----EAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 323 (842)
Q Consensus 254 Sr~LwVGnL~~dvt-----E~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~ 323 (842)
.++|.|-||..+|- ++.+|++|..|+++.++-..++=.=.-|+|.+.++|++|+..|+|..+. |+.|+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 46799999988773 3678999999999999998886667799999999999999999999654 7777764
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.70 E-value=0.0028 Score=59.41 Aligned_cols=60 Identities=8% Similarity=-0.008 Sum_probs=49.7
Q ss_pred ccccceEEEccCCCc-hhHHHHHHHHhhccccCCceeee-cCCCceeeEEecC-hhhHHHHHHHhh
Q 003170 336 VGSCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMVTD-LSCEGALLMEFRT-PEEATTAMAHLR 398 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~-~~kEEi~~E~~k~g~~g~~~~~d-l~~r~~afVEF~s-~edAa~Am~~lr 398 (842)
-...+.|||||++.. +++|+|...|.++ |++.+++ ..++..+||+|.+ .++|..|++.++
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~---G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNH---GEIKWIDFVRGAKEGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSS---CCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTT
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhc---CCEEEEEEecCCCEEEEEECCChHHHHHHHHHhh
Confidence 367899999999999 9999999998885 5654444 4566679999999 799999999885
No 376
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=96.34 E-value=0.0029 Score=56.42 Aligned_cols=60 Identities=20% Similarity=0.191 Sum_probs=40.3
Q ss_pred EccCCCchhHHHH-----------HHHH-hhccccCCceeeec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 344 VGNIPNQWAKDEI-----------LHES-YKVVYKGPYMVTDL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 344 VG~Iss~~~kEEi-----------~~E~-~k~g~~g~~~~~dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
+++++..++.++| ..|| .++|.+-.+.+..- .+++++||+|.+.++|..|+..|+|+..+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4555555555544 4555 77766554433221 23678999999999999999999998753
No 377
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.21 E-value=0.014 Score=52.38 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=54.2
Q ss_pred CeEEecCCCCccCHHHHHHhccccCCcceEEEecC--------CceEEEEecChHHHHHHHHHhcCCc
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI--------KGFALVEYINIIDAIRAREYIRNHF 314 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~--------RGFAFVeF~~i~DA~~A~~~L~G~~ 314 (842)
.+|-|.+|+++.||+++++.++.+..++-+.+.++ .+-|+|.|.+.+|+.+=.+.++|+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 47889999999999999999999999888877653 3789999999999999999999985
No 378
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.01 E-value=0.0052 Score=55.01 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=40.5
Q ss_pred CchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhc
Q 003170 349 NQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 400 (842)
Q Consensus 349 s~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~ 400 (842)
..+++++|...|.++|.+-.+.+.. .++.+|||||++.++|..|+..+++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~~ 77 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVGL 77 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCBC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCCC
Confidence 3478899999999987665554432 57889999999999999999986553
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.023 Score=53.39 Aligned_cols=61 Identities=8% Similarity=-0.011 Sum_probs=58.3
Q ss_pred CCeEEecCCCCccCHHHHHHhcccc-----CCcceEEEecCCceEEEEecChHHHHHHHHHhcCCc
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRF-----GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF 314 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rf-----GpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~ 314 (842)
.+.|=+=||+.-++++.|+.+.+.| |+|..+...+.-+=|+|+|+|..+|-+|.=+|+|..
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~e 86 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQ 86 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCee
Confidence 5678888999999999999999999 999999999999999999999999999999999985
No 380
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.026 Score=54.33 Aligned_cols=64 Identities=11% Similarity=-0.043 Sum_probs=47.6
Q ss_pred ceEEEccC----CCchhHHHHHHHHhhccccCCc-eeeec---CCCceeeEEecC----hhh----HHHHHH--Hhhhcc
Q 003170 340 FHVYVGNI----PNQWAKDEILHESYKVVYKGPY-MVTDL---SCEGALLMEFRT----PEE----ATTAMA--HLRQHR 401 (842)
Q Consensus 340 ~~LwVG~I----ss~~~kEEi~~E~~k~g~~g~~-~~~dl---~~r~~afVEF~s----~ed----Aa~Am~--~lrg~R 401 (842)
..||||++ +..++.++|.+-|..||-+-.+ .+.|= .+++++||+|.+ +++ |..|++ .+++++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999997755443 22222 236679999996 766 677777 678888
Q ss_pred cC
Q 003170 402 KS 403 (842)
Q Consensus 402 ~e 403 (842)
++
T Consensus 83 I~ 84 (136)
T 2j8a_A 83 IM 84 (136)
T ss_dssp ET
T ss_pred ec
Confidence 76
No 381
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.20 E-value=0.024 Score=63.58 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=44.6
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCc-eEEEEecChHHHHHH
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKG-FALVEYINIIDAIRA 306 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RG-FAFVeF~~i~DA~~A 306 (842)
.-..+.|.|+|- .++.+++.+|.+-|.+||+|.++.++..+| ||.|||.+.+.|..+
T Consensus 48 r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~ 105 (464)
T 3pq1_A 48 RREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSL 105 (464)
T ss_dssp HHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHH
T ss_pred HHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHH
Confidence 345678999996 799999999999999999999999999777 999999998776654
No 382
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=93.40 E-value=0.13 Score=48.42 Aligned_cols=73 Identities=12% Similarity=0.166 Sum_probs=53.9
Q ss_pred eccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCc
Q 003170 240 YFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF 314 (842)
Q Consensus 240 ~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~ 314 (842)
|-.|++...+.....+-|-|-..++.. ...+...|++||.|.+.......++-.|.|.+..+|++|+.. +|+.
T Consensus 10 ~~~~~~l~~~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~i 82 (119)
T 1wwh_A 10 YTQGDSLTSEDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRI 82 (119)
T ss_dssp -----------CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCE
T ss_pred eeCCcccCCCCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeE
Confidence 446777777766667778888888885 677888999999999999877889999999999999999987 7774
No 383
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.82 E-value=0.13 Score=47.01 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=50.9
Q ss_pred CCeEEecCCCCccCHHHHHHhccccCCcceEEEec--------CCceEEEEecChHHHHHHHHHhcCCc
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--------IKGFALVEYINIIDAIRAREYIRNHF 314 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~--------~RGFAFVeF~~i~DA~~A~~~L~G~~ 314 (842)
|-+|-|..|+|+.||+++.++++..=+++-+.+.+ --+-|+|+|.+.+|..+-.+..+|..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~ 77 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYI 77 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcE
Confidence 56799999999999999999988776655444433 23779999999999999999999985
No 384
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=92.54 E-value=0.087 Score=51.46 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=39.9
Q ss_pred hhHHHHHHHHhhccccCCceee-ec-------CCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 351 WAKDEILHESYKVVYKGPYMVT-DL-------SCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 351 ~~kEEi~~E~~k~g~~g~~~~~-dl-------~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
...|+|.+||.++|..-...+. +. .++...||+|.+.++|..|+..|+|+-.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 4578899999998766554332 11 3346799999999999999999999764
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=91.52 E-value=0.56 Score=43.17 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=51.7
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcceEEE
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSWRVK 319 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~RIr 319 (842)
...|+++=+.++.....||+.+|+.||-|.==|+- -.-|||-|.+.+.|..|+..|.-...++|+
T Consensus 14 ~r~HVf~l~FP~ewKt~DI~~lFs~fggv~I~Wid--DTsAlvvf~~~~~a~~al~~i~k~~~y~i~ 78 (100)
T 1whv_A 14 KRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWID--DTSAFVSLSQPEQVQIAVNTSKYAESYRIQ 78 (100)
T ss_dssp CCCSEEEEECCTTCCHHHHHHHHTTTCSCCCEEEE--TTEEEEECSCHHHHHHHHHHHHHCCSSEEE
T ss_pred CCCeEEEEeCChhhhhHHHHHHhhccCCEEEEEEc--CCeEEEEecCHHHHHHHHHhcccCCceEEE
Confidence 34455555999999999999999999966655554 478999999999999999998755545554
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.28 E-value=0.5 Score=43.75 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=54.6
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccc-c----CCcceEEEecCCceEEEEecChHHHHHHHHH----hcCCcce
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDR-F----GPLEHFFFFPIKGFALVEYINIIDAIRAREY----IRNHFSW 316 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~r-f----GpIesV~~~~~RGFAFVeF~~i~DA~~A~~~----L~G~~~~ 316 (842)
+..+.|-|-||++++.++.|+--|+. - |+|++|...+ +-|+|.|.+..+|.+-++. |+|..+.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 45688999999999999999999998 3 8999999877 9999999999999888766 7776544
No 387
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.79 E-value=0.39 Score=43.35 Aligned_cols=57 Identities=14% Similarity=0.185 Sum_probs=38.8
Q ss_pred eEEEccCCC----chhHHH----HHHHHhhccccCC-ceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 341 HVYVGNIPN----QWAKDE----ILHESYKVVYKGP-YMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 341 ~LwVG~Iss----~~~kEE----i~~E~~k~g~~g~-~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
+|.|--.++ .+-.|+ |+..|.. +|. +.++...++ +||+|++-++|.+|+. |+|+.+.
T Consensus 9 tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~---~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 9 TVLVSIKSSLPENNFFDDALIDELLQQFAS---FGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp EEEEEEECSSTTTCSCCHHHHHHHHHHHHT---TCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEET
T ss_pred eEEEEeccCccccccCCHHHHHHHHHHHHh---CCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeC
Confidence 555655552 355544 4445555 454 456666554 8999999999999998 9999863
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=89.53 E-value=0.99 Score=41.56 Aligned_cols=53 Identities=11% Similarity=0.224 Sum_probs=43.9
Q ss_pred ceEEEccCCCchhHHHHHHHHhhccccCC-ceeeecCCCceeeEEecChhhHHHHHHHhh
Q 003170 340 FHVYVGNIPNQWAKDEILHESYKVVYKGP-YMVTDLSCEGALLMEFRTPEEATTAMAHLR 398 (842)
Q Consensus 340 ~~LwVG~Iss~~~kEEi~~E~~k~g~~g~-~~~~dl~~r~~afVEF~s~edAa~Am~~lr 398 (842)
..++| +.|+.|...+|++-|+.|| |- |+.+ ++..|||-|.+.+.|..||..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fg--gv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFG--NIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTC--SCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccC--CEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999986 33 3443 48899999999999999999885
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=88.81 E-value=0.3 Score=45.01 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=45.7
Q ss_pred EEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 257 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 257 LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
|+| +.++.-...||+.+|+.||-|.==|+ .-.-|||-|.+.+.|..|+..|.-...+
T Consensus 9 ~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi--dDTsAlvvf~~~~~a~~al~~i~~~~~y 65 (101)
T 3ctr_A 9 LHV-TFPKEWKTSDLYQLFSAFGNIQISWI--DDTSAFVSLSQPEQVKIAVNTSKYAESY 65 (101)
T ss_dssp EEE-ECCTTCCHHHHHHHTTTSEEEEEEEE--ETTEEEEEEEEECHHHHHHHHHTTCSSC
T ss_pred EEE-eCChhhhhHHHHHHHhccCCEEEEEE--cCCeEEEEecCHHHHHHHHHhcccCCce
Confidence 455 99999999999999999994333333 4578999999999999999998644433
No 390
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.07 E-value=0.6 Score=42.52 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=41.8
Q ss_pred ccceEEEccCCC-----chhHHHHHHHHh-hccccCC-ceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 338 SCFHVYVGNIPN-----QWAKDEILHESY-KVVYKGP-YMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 338 ~s~~LwVG~Iss-----~~~kEEi~~E~~-k~g~~g~-~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
+--+|.|--.++ .|-.|++..+++ +|.-+|. +.++...++ +||+|++-++|.+|+. |+|+.+.
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeC
Confidence 344777776654 244544444332 2222454 566666555 9999999999999998 9999874
No 391
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=83.60 E-value=0.2 Score=53.43 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=4.3
Q ss_pred HHHHHHHhhh
Q 003170 52 LKRIFESFSE 61 (842)
Q Consensus 52 ~~~~~~~~~~ 61 (842)
++.+++-|.+
T Consensus 20 ~~~~~~~F~~ 29 (449)
T 3iot_A 20 LAEVGKKFEK 29 (449)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 4444444443
No 392
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=83.47 E-value=1.9 Score=48.67 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=49.8
Q ss_pred CCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcceEE
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSWRV 318 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~RI 318 (842)
..-|+|+ ++......||++.|+.||.++=.|+ ....|||.|.+.++|..|++.+.-...++|
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi--ddt~a~V~~~~~~~a~~~l~~~~~~~~~~i 501 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI--DDTSAFVSLSQPEQVQIAVNTSKYAESYRI 501 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC--SSSEEEEECSCHHHHHHHHHHHTTCSSCEE
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE--cCCeEEEEECCHHHHHHHHHHHHhCCceEE
Confidence 4567777 8888999999999999995433332 667899999999999999999976655554
No 393
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=83.42 E-value=0.22 Score=50.50 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=77.4
Q ss_pred cccccccccccc-ccCcceeeEEEeeecccccccccCCCCCCCCCccccccccchhccc--ccccccC-CCCCcceeEec
Q 003170 691 QLLQYQWQGALC-KSGVHYCTIYAQREESDICKYTHDISEPAEWPAKLDMTKRTDFRHV--KSTFTST-PPNKREVCRLV 766 (842)
Q Consensus 691 s~~~~~WqG~la-KsG~~~C~~~~~~v~~~~~k~~~~~~ep~~WP~~lD~T~RTdld~L--e~lFa~t-p~~~r~v~~l~ 766 (842)
+..-..|||.|+ |.-.-.+.+.+..++.++..-. .+++.. -..+-.|.|.-++.. +...... .++...++--+
T Consensus 34 ~~~p~~WqG~L~LKn~~f~v~mh~v~Gn~~l~~~~--L~~~~~-~~~LRItQRmRLd~~qLe~V~rRi~~~~~~cilLAl 110 (195)
T 1ow1_A 34 KKYPIVWQGLLALKNDTAAVQLHFVSGNNVLAHRS--LPLSEG-GPPLRIAQRMRLEATQLEGVARRMTVETDYCLLLAL 110 (195)
T ss_dssp HHSCEEEEEEEEETTEEEEEEEEEEEECHHHHHHH--SCCC----CCEEECEEEECSHHHHHHHHHHTSSTTTEEEEEEE
T ss_pred hhCchhceeeeeeecchhhhEEEEEeCcHHHHHHh--CCCCCC-CCceeeehhhccChHHHHHHHHHHhCCCCceEEEEe
Confidence 445678999986 7777788888888886655211 112111 133445555544432 3222222 12344554444
Q ss_pred CCCCCC-------CchHHHHHHHHhhcCccceeeccchh-hhHhhhhhccCCchhhhccccc
Q 003170 767 PSSPGD-------HKGFQDFVSYLKQRECAGVIKIPAVK-SIWARLMFILPYSQDICSMLSI 820 (842)
Q Consensus 767 P~S~~d-------~~~~qdFI~yLkqk~rAgVik~~~~~-~~~~rlL~llP~s~e~~~~L~v 820 (842)
|+.... ..-...||+||++|+-||||-++... ..-.-.|||.|+-++..+.|+=
T Consensus 111 p~~~~~~d~~~q~~~L~~~fV~YL~qKqAAGIisl~~~~s~~~~~vlhiFPPCeFs~~~L~~ 172 (195)
T 1ow1_A 111 PCGRDQEDVVSQTESLKAAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCEFSESHLSR 172 (195)
T ss_dssp ECCSSHHHHHHHHHHHHHHTHHHHHHHTEEEEEEECCTTCCSCCEEEEEECSSHHHHHHHHH
T ss_pred cCCCCchhhHhhhhHHHHHHHHHHHhCccceEEecCCCCCCCcceEEEEcCCcHHHHHHHHH
Confidence 544321 22246699999999999999998633 2233589999999999887765
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=80.59 E-value=1.4 Score=40.54 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=43.7
Q ss_pred eEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhh
Q 003170 341 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 398 (842)
Q Consensus 341 ~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lr 398 (842)
||++=+.|+.|...+|+.-|+.+| .+.|.- -++..|||-|.+.+.|..||..++
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fg---gv~I~W-idDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFG---NIQISW-IDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSE---EEEEEE-EETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccC---CEEEEE-EcCCeEEEEecCHHHHHHHHHhcc
Confidence 444449999999999999999986 333332 348899999999999999999875
No 395
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=77.57 E-value=4.8 Score=37.99 Aligned_cols=65 Identities=9% Similarity=-0.028 Sum_probs=52.9
Q ss_pred cceEEEccCCCchhHHHHHHHHhhcccc--CCc-eeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 339 CFHVYVGNIPNQWAKDEILHESYKVVYK--GPY-MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 339 s~~LwVG~Iss~~~kEEi~~E~~k~g~~--g~~-~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
-++|=+=+||..+.++.|..-+..+..+ |++ .+.-.++-+.|+|||.+..+|..|+..|+|+-.+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEET
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeec
Confidence 5678888999999999997777765333 554 5666667777999999999999999999998765
No 396
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=69.78 E-value=12 Score=34.57 Aligned_cols=68 Identities=7% Similarity=-0.005 Sum_probs=51.1
Q ss_pred ceEEEccCCCch-----hHHHHHHHHhhccccCC-ceeeecCCCceeeEEecChhhHHHHHHHhhhcccC----CCCCCC
Q 003170 340 FHVYVGNIPNQW-----AKDEILHESYKVVYKGP-YMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS----RSNYLP 409 (842)
Q Consensus 340 ~~LwVG~Iss~~-----~kEEi~~E~~k~g~~g~-~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e----rSsf~~ 409 (842)
++|+|-+++..+ .|+++++-|+.+ ++ ..|--|.+=.-..|.|.+.|+|++|...|++.... ++.|+|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~---~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTY---DKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTT---CSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhh---CcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 468899997743 246666666664 43 35666766667899999999999999999988853 788886
Q ss_pred C
Q 003170 410 P 410 (842)
Q Consensus 410 r 410 (842)
.
T Consensus 83 ~ 83 (104)
T 1wey_A 83 T 83 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 397
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=42.76 E-value=38 Score=38.14 Aligned_cols=56 Identities=11% Similarity=0.215 Sum_probs=45.5
Q ss_pred cceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhh
Q 003170 339 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 399 (842)
Q Consensus 339 s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg 399 (842)
...++|+ .++.|...+|.+-+..+| ...|. .-++++|||.|.+.|.|..|+..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg---~v~V~-widdt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFG---NIQIS-WIDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGC---CCEEE-ECSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcC---CEEEE-EEcCCeEEEEECCHHHHHHHHHHHHh
Confidence 5577777 778888999999998865 44454 46788999999999999999998863
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=37.54 E-value=16 Score=35.14 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=34.8
Q ss_pred CccCHHHHHHhccccCCcce-EEE----------------e---cCCceEEEEecChHHHHHHHHH
Q 003170 264 PEASEAHIRFQIDRFGPLEH-FFF----------------F---PIKGFALVEYINIIDAIRAREY 309 (842)
Q Consensus 264 ~dvtE~dL~~~F~rfGpIes-V~~----------------~---~~RGFAFVeF~~i~DA~~A~~~ 309 (842)
+......+-+.|++||.|.. +-. + ...+.--|.|.+..+|.+|++.
T Consensus 16 p~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~ 81 (132)
T 3p3d_A 16 PETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE 81 (132)
T ss_dssp CGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh
Confidence 44556677889999999976 311 1 2467889999999999999764
No 399
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=34.03 E-value=66 Score=30.26 Aligned_cols=60 Identities=12% Similarity=-0.016 Sum_probs=41.8
Q ss_pred cceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 339 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 339 s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.+.|-|=|.+.. ....|+++|.++|-+-... .-...|-..|.|.+..+|.+|+.. ||+.+
T Consensus 24 ~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~--~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii 83 (119)
T 1wwh_A 24 DTWVTVFGFPQA-SASYILLQFAQYGNILKHV--MSNTGNWMHIRYQSKLQARKALSK-DGRIF 83 (119)
T ss_dssp GGEEEEECCCGG-GHHHHHHHHHTTSCEEEEE--ECSSSSEEEEEESSHHHHHHHHTT-TTCEE
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhhCcEEEec--cCCCCCeEEEEeCCHHHHHHHHHh-CCeEe
Confidence 455666566555 4799999999975553321 223567799999999999999653 55554
No 400
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=33.98 E-value=55 Score=29.21 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=43.0
Q ss_pred eEEEccCCCchhHHHHHHHHhhcccc-------CCceeeecCCCce-eeEEecChhhHHHHHHHhhhcc
Q 003170 341 HVYVGNIPNQWAKDEILHESYKVVYK-------GPYMVTDLSCEGA-LLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 341 ~LwVG~Iss~~~kEEi~~E~~k~g~~-------g~~~~~dl~~r~~-afVEF~s~edAa~Am~~lrg~R 401 (842)
.|-|=++|+..++||+++.+.-.... |..... ....+ |||.|.+.|++..-+..++|+.
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~--~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLY--PHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSST--TCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCC--CCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 56778899999999999888765422 211110 11122 9999999999999999999887
No 401
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=31.64 E-value=24 Score=39.77 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=38.0
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCC-ceeeecCCCceeeEEecChhhHHHHH
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YMVTDLSCEGALLMEFRTPEEATTAM 394 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~-~~~~dl~~r~~afVEF~s~edAa~Am 394 (842)
+..|.|+|- .++..+..|+.+-|.++|-+-. .+++ ...++|.|||.+.|+|..++
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~--~~g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYE--SFGLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEEC--SSSEEEEEECC---CCHHHH
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEc--cCCeEEEEEeCCHHHHHHHH
Confidence 568899997 7889999999999999766654 3443 33567999999999888663
No 402
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.91 E-value=96 Score=28.71 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=39.8
Q ss_pred cceEEEccCCCchhHHHHHHHHhhcccc--CCceeeecCCCceeeEEecChhhHHHHHHH
Q 003170 339 CFHVYVGNIPNQWAKDEILHESYKVVYK--GPYMVTDLSCEGALLMEFRTPEEATTAMAH 396 (842)
Q Consensus 339 s~~LwVG~Iss~~~kEEi~~E~~k~g~~--g~~~~~dl~~r~~afVEF~s~edAa~Am~~ 396 (842)
-+.|.|=|+++.+.+|-|+==|.+---. |++.-..... +.|+|+|...+.|.++++.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-TEEEEEESSHHHHHHHHTC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-CcEEEEEcChHHHHHHhcC
Confidence 4689999999999877666555552111 4443333333 8899999999999887664
No 403
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=27.07 E-value=30 Score=39.95 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=52.3
Q ss_pred ccccCCCCCeEEec-CCCCccCHHHHHHhc----cccCCcceEEEe--c---CCceEEEEecChHHHHHHHHHhcCCc--
Q 003170 247 AMDIFSASKQLWLG-SFGPEASEAHIRFQI----DRFGPLEHFFFF--P---IKGFALVEYINIIDAIRAREYIRNHF-- 314 (842)
Q Consensus 247 ~~~v~s~Sr~LwVG-nL~~dvtE~dL~~~F----~rfGpIesV~~~--~---~RGFAFVeF~~i~DA~~A~~~L~G~~-- 314 (842)
.+.+..+.-.|+-+ ....+++--||..+| +-+|-|+.+++. + .+.+++|.|.+.+||.+|++.+....
T Consensus 335 gleVVlpdG~i~~~~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~~~~~ 414 (658)
T 4bby_A 335 HMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCA 414 (658)
T ss_dssp EEEEEETTEEEECSCCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred eEEEEeCCCcccccccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHHcCCC
Confidence 34444455555432 333444445677776 478999988874 2 45788999999999999999886543
Q ss_pred ceEEEEecc
Q 003170 315 SWRVKFMDV 323 (842)
Q Consensus 315 ~~RIrF~r~ 323 (842)
+..+||+|.
T Consensus 415 psa~El~D~ 423 (658)
T 4bby_A 415 PASIRLMDN 423 (658)
T ss_dssp CSEEEEECH
T ss_pred ccccccccH
Confidence 348888864
No 404
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=21.29 E-value=19 Score=37.99 Aligned_cols=7 Identities=14% Similarity=-0.296 Sum_probs=3.5
Q ss_pred cccccCc
Q 003170 700 ALCKSGV 706 (842)
Q Consensus 700 ~laKsG~ 706 (842)
.|-+|+.
T Consensus 69 ~LG~G~~ 75 (400)
T 1nxk_A 69 VLGLGIN 75 (400)
T ss_dssp EEEEETT
T ss_pred eeeeccC
Confidence 4555554
Done!