Query 003171
Match_columns 842
No_of_seqs 446 out of 2523
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 18:23:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0566 Inositol-1,4,5-triphos 100.0 3.7E-65 8E-70 579.2 21.6 276 516-841 506-789 (1080)
2 PLN03191 Type I inositol-1,4,5 100.0 5.7E-58 1.2E-62 511.9 25.3 192 617-838 348-541 (621)
3 smart00128 IPPc Inositol polyp 100.0 1.9E-56 4E-61 486.3 24.7 247 551-840 2-257 (310)
4 COG5411 Phosphatidylinositol 5 100.0 3.7E-48 8.1E-53 414.0 16.8 270 527-841 5-283 (460)
5 KOG0271 Notchless-like WD40 re 100.0 6.7E-40 1.4E-44 341.5 27.0 325 142-524 127-479 (480)
6 KOG0271 Notchless-like WD40 re 100.0 6.9E-36 1.5E-40 311.5 27.7 320 191-566 115-466 (480)
7 KOG0272 U4/U6 small nuclear ri 100.0 1E-33 2.2E-38 299.3 21.8 266 191-524 175-458 (459)
8 KOG0281 Beta-TrCP (transducin 100.0 9E-33 2E-37 284.7 15.9 268 135-530 200-481 (499)
9 KOG0295 WD40 repeat-containing 100.0 6.8E-30 1.5E-34 266.1 23.7 267 191-525 108-405 (406)
10 KOG0281 Beta-TrCP (transducin 100.0 1.8E-31 3.9E-36 275.1 11.5 231 191-527 197-429 (499)
11 KOG0286 G-protein beta subunit 100.0 1.5E-28 3.4E-33 249.6 29.9 268 139-524 64-343 (343)
12 KOG0263 Transcription initiati 100.0 2.8E-29 6E-34 283.9 24.9 242 191-528 378-651 (707)
13 KOG0319 WD40-repeat-containing 100.0 6.3E-29 1.4E-33 278.0 27.2 362 135-524 108-617 (775)
14 KOG0279 G protein beta subunit 100.0 5.5E-28 1.2E-32 244.5 29.3 261 148-527 35-314 (315)
15 KOG0315 G-protein beta subunit 100.0 7.4E-28 1.6E-32 239.8 25.3 257 148-528 17-290 (311)
16 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-28 5E-33 258.8 21.0 256 142-485 187-458 (459)
17 KOG0319 WD40-repeat-containing 100.0 1.8E-27 4E-32 266.3 28.8 372 138-564 70-579 (775)
18 KOG0263 Transcription initiati 100.0 6.1E-27 1.3E-31 265.0 26.5 240 144-487 391-649 (707)
19 KOG0279 G protein beta subunit 100.0 1.7E-26 3.7E-31 233.7 25.5 245 191-534 15-270 (315)
20 KOG0285 Pleiotropic regulator 100.0 5.4E-27 1.2E-31 243.4 21.8 233 191-528 151-391 (460)
21 KOG0273 Beta-transducin family 99.9 1.9E-26 4.1E-31 247.0 25.1 296 142-566 190-508 (524)
22 KOG0266 WD40 repeat-containing 99.9 5.4E-26 1.2E-30 261.9 30.9 265 142-525 171-453 (456)
23 KOG0274 Cdc4 and related F-box 99.9 3E-26 6.5E-31 264.6 27.1 268 142-535 218-491 (537)
24 KOG0313 Microtubule binding pr 99.9 2.1E-26 4.6E-31 241.2 22.9 284 191-566 105-404 (423)
25 KOG0315 G-protein beta subunit 99.9 2E-25 4.3E-30 222.5 26.2 265 126-506 24-308 (311)
26 KOG0318 WD40 repeat stress pro 99.9 1.9E-24 4.1E-29 234.2 35.3 346 133-526 191-602 (603)
27 KOG0266 WD40 repeat-containing 99.9 3.6E-25 7.9E-30 255.0 29.3 238 191-529 159-412 (456)
28 KOG0313 Microtubule binding pr 99.9 2.5E-25 5.3E-30 233.2 24.5 288 133-524 106-416 (423)
29 KOG0291 WD40-repeat-containing 99.9 1.3E-24 2.7E-29 243.6 30.4 270 134-527 309-613 (893)
30 KOG0318 WD40 repeat stress pro 99.9 1.5E-23 3.2E-28 227.4 37.4 332 191-530 190-564 (603)
31 KOG0265 U5 snRNP-specific prot 99.9 4.1E-25 8.9E-30 225.7 23.5 264 191-522 47-334 (338)
32 KOG0274 Cdc4 and related F-box 99.9 3.2E-25 7E-30 256.0 24.2 235 191-534 208-449 (537)
33 KOG0285 Pleiotropic regulator 99.9 2E-24 4.4E-29 224.4 25.7 268 132-524 151-437 (460)
34 KOG0306 WD40-repeat-containing 99.9 1.7E-23 3.6E-28 234.6 34.8 370 135-534 68-630 (888)
35 PLN00181 protein SPA1-RELATED; 99.9 1.4E-23 3E-28 258.4 37.3 275 133-525 484-792 (793)
36 KOG0295 WD40 repeat-containing 99.9 4.3E-24 9.3E-29 222.9 25.8 266 148-485 127-404 (406)
37 KOG0284 Polyadenylation factor 99.9 3.3E-25 7.1E-30 234.0 17.4 263 139-526 105-380 (464)
38 cd00200 WD40 WD40 domain, foun 99.9 6.8E-23 1.5E-27 215.2 33.5 266 191-524 9-289 (289)
39 KOG0292 Vesicle coat complex C 99.9 6.3E-24 1.4E-28 240.7 25.4 299 191-531 9-326 (1202)
40 KOG0291 WD40-repeat-containing 99.9 2.3E-22 5.1E-27 225.5 37.2 360 136-527 100-509 (893)
41 KOG0286 G-protein beta subunit 99.9 2.4E-23 5.3E-28 212.0 26.4 239 191-527 55-304 (343)
42 KOG0276 Vesicle coat complex C 99.9 1.2E-23 2.5E-28 231.5 25.6 269 112-521 12-294 (794)
43 KOG0645 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 205.1 29.8 260 148-526 34-311 (312)
44 KOG0306 WD40-repeat-containing 99.9 2.5E-23 5.5E-28 233.1 27.0 277 134-525 375-663 (888)
45 KOG0293 WD40 repeat-containing 99.9 1E-23 2.2E-28 222.5 22.1 272 191-526 224-513 (519)
46 KOG0308 Conserved WD40 repeat- 99.9 3.1E-24 6.6E-29 237.5 17.6 246 196-529 29-288 (735)
47 KOG0296 Angio-associated migra 99.9 1.8E-22 4E-27 211.0 27.7 299 191-526 64-398 (399)
48 PLN00181 protein SPA1-RELATED; 99.9 4.7E-22 1E-26 244.9 35.8 242 191-530 483-742 (793)
49 KOG0276 Vesicle coat complex C 99.9 5.7E-23 1.2E-27 226.1 24.1 239 191-533 13-264 (794)
50 KOG0284 Polyadenylation factor 99.9 5.7E-24 1.2E-28 224.6 15.5 236 192-531 97-342 (464)
51 KOG0301 Phospholipase A2-activ 99.9 1.2E-22 2.5E-27 226.6 24.6 264 136-527 18-289 (745)
52 KOG0282 mRNA splicing factor [ 99.9 9.8E-24 2.1E-28 227.3 14.2 266 191-524 214-503 (503)
53 KOG0565 Inositol polyphosphate 99.9 1.2E-23 2.6E-28 204.6 12.4 143 632-799 2-145 (145)
54 KOG0275 Conserved WD40 repeat- 99.9 1.4E-22 2.9E-27 207.9 16.2 270 142-524 225-507 (508)
55 KOG0645 WD40 repeat protein [G 99.9 9.9E-21 2.2E-25 191.3 29.0 264 191-562 14-291 (312)
56 KOG0316 Conserved WD40 repeat- 99.9 2.6E-21 5.6E-26 191.8 23.3 266 191-527 17-300 (307)
57 KOG0273 Beta-transducin family 99.9 6.5E-21 1.4E-25 204.8 28.0 277 133-526 236-523 (524)
58 KOG0275 Conserved WD40 repeat- 99.9 5.5E-22 1.2E-26 203.5 15.9 243 191-528 213-469 (508)
59 KOG0265 U5 snRNP-specific prot 99.9 2.7E-20 5.9E-25 190.6 27.3 272 135-484 50-335 (338)
60 PTZ00312 inositol-1,4,5-tripho 99.9 2.1E-22 4.5E-27 205.5 10.3 119 673-827 64-219 (356)
61 cd00200 WD40 WD40 domain, foun 99.9 2.6E-19 5.5E-24 188.0 33.6 264 134-485 11-289 (289)
62 KOG0288 WD40 repeat protein Ti 99.9 1.3E-21 2.9E-26 207.2 15.9 254 144-524 189-459 (459)
63 KOG0283 WD40 repeat-containing 99.9 1.1E-20 2.4E-25 216.2 22.4 241 191-530 267-580 (712)
64 KOG0301 Phospholipase A2-activ 99.9 7.9E-21 1.7E-25 212.1 20.4 229 191-526 14-249 (745)
65 PTZ00421 coronin; Provisional 99.9 7.1E-20 1.5E-24 211.3 28.9 248 193-529 22-293 (493)
66 KOG0640 mRNA cleavage stimulat 99.9 1.8E-20 3.8E-25 192.0 20.3 277 191-524 112-424 (430)
67 KOG0292 Vesicle coat complex C 99.9 9.9E-20 2.1E-24 207.0 27.4 277 150-487 30-321 (1202)
68 PTZ00420 coronin; Provisional 99.9 1.9E-19 4E-24 209.1 30.4 223 208-527 49-294 (568)
69 PTZ00420 coronin; Provisional 99.9 1.8E-19 3.8E-24 209.2 29.9 227 191-510 74-318 (568)
70 KOG0300 WD40 repeat-containing 99.9 3.6E-20 7.8E-25 189.9 20.4 289 191-529 148-479 (481)
71 KOG0278 Serine/threonine kinas 99.8 9.4E-21 2E-25 189.2 14.9 231 191-527 59-298 (334)
72 KOG0277 Peroxisomal targeting 99.8 8.9E-20 1.9E-24 182.9 21.8 230 191-524 60-307 (311)
73 KOG0294 WD40 repeat-containing 99.8 2.4E-19 5.3E-24 184.6 24.6 233 184-488 37-282 (362)
74 KOG0308 Conserved WD40 repeat- 99.8 2.6E-20 5.7E-25 206.5 18.8 277 144-527 39-328 (735)
75 PTZ00421 coronin; Provisional 99.8 9.3E-19 2E-23 202.0 31.9 223 191-509 75-314 (493)
76 KOG0296 Angio-associated migra 99.8 1.2E-18 2.6E-23 182.6 29.5 295 135-486 67-397 (399)
77 KOG0316 Conserved WD40 repeat- 99.8 2.4E-19 5.1E-24 177.9 21.5 233 232-527 8-258 (307)
78 KOG0268 Sof1-like rRNA process 99.8 3.7E-20 8.1E-25 193.4 15.9 262 182-526 56-345 (433)
79 KOG0305 Anaphase promoting com 99.8 1.8E-18 3.9E-23 193.8 26.2 262 142-528 188-463 (484)
80 KOG0278 Serine/threonine kinas 99.8 1.3E-19 2.8E-24 181.1 14.7 238 126-489 43-300 (334)
81 KOG1446 Histone H3 (Lys4) meth 99.8 1.4E-17 3E-22 172.4 29.8 265 191-525 14-302 (311)
82 KOG0643 Translation initiation 99.8 5.4E-18 1.2E-22 171.2 25.0 268 191-525 10-316 (327)
83 KOG0641 WD40 repeat protein [G 99.8 6.4E-17 1.4E-21 159.5 31.4 294 126-525 29-348 (350)
84 KOG0310 Conserved WD40 repeat- 99.8 1.9E-18 4.1E-23 187.0 22.4 226 192-524 69-307 (487)
85 KOG0277 Peroxisomal targeting 99.8 1.1E-18 2.3E-23 175.1 18.8 245 119-486 43-308 (311)
86 KOG0299 U3 snoRNP-associated p 99.8 1.5E-18 3.3E-23 186.5 20.9 239 191-527 142-411 (479)
87 KOG0973 Histone transcription 99.8 2.8E-18 6.1E-23 201.0 24.3 304 191-595 13-360 (942)
88 KOG0641 WD40 repeat protein [G 99.8 3.8E-17 8.2E-22 161.1 27.4 245 191-526 32-303 (350)
89 KOG0299 U3 snoRNP-associated p 99.8 1.3E-17 2.8E-22 179.5 26.0 274 141-524 153-454 (479)
90 KOG1407 WD40 repeat protein [F 99.8 1.9E-17 4.2E-22 166.8 25.1 250 191-510 20-284 (313)
91 KOG0282 mRNA splicing factor [ 99.8 2E-18 4.3E-23 186.6 18.4 258 148-485 234-503 (503)
92 KOG0646 WD40 repeat protein [G 99.8 5.6E-18 1.2E-22 182.6 19.7 207 191-534 81-315 (476)
93 KOG0289 mRNA splicing factor [ 99.8 5.5E-17 1.2E-21 173.1 26.2 268 191-524 219-504 (506)
94 KOG0293 WD40 repeat-containing 99.8 1.7E-17 3.7E-22 175.8 22.1 257 148-487 243-513 (519)
95 KOG0310 Conserved WD40 repeat- 99.8 3.4E-17 7.3E-22 177.5 22.5 221 142-487 80-309 (487)
96 KOG1408 WD40 repeat protein [F 99.8 2E-16 4.3E-21 176.7 28.6 385 138-527 266-714 (1080)
97 KOG0647 mRNA export protein (c 99.8 1.6E-16 3.6E-21 163.1 25.0 256 134-478 29-315 (347)
98 KOG0288 WD40 repeat protein Ti 99.8 3.8E-18 8.2E-23 181.1 13.4 258 191-564 175-444 (459)
99 KOG0321 WD40 repeat-containing 99.8 2.5E-17 5.3E-22 182.8 20.3 304 144-527 66-392 (720)
100 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6.8E-16 1.5E-20 166.3 30.5 254 148-530 8-283 (300)
101 KOG2445 Nuclear pore complex c 99.7 9.1E-16 2E-20 158.0 25.6 255 191-524 13-316 (361)
102 KOG0973 Histone transcription 99.7 7.9E-16 1.7E-20 180.7 28.5 296 134-527 15-356 (942)
103 KOG2048 WD40 repeat protein [G 99.7 3.2E-15 6.8E-20 167.6 31.9 279 134-527 27-320 (691)
104 KOG2096 WD40 repeat protein [G 99.7 7.5E-16 1.6E-20 158.9 24.0 286 191-524 86-400 (420)
105 KOG0640 mRNA cleavage stimulat 99.7 1.5E-16 3.3E-21 163.3 18.8 284 134-486 114-425 (430)
106 KOG0647 mRNA export protein (c 99.7 1.5E-15 3.3E-20 156.0 25.6 257 191-517 27-315 (347)
107 KOG0300 WD40 repeat-containing 99.7 5.5E-17 1.2E-21 166.7 14.9 259 204-534 125-395 (481)
108 KOG0772 Uncharacterized conser 99.7 1.2E-16 2.6E-21 173.5 18.2 254 233-566 159-436 (641)
109 KOG1539 WD repeat protein [Gen 99.7 4E-15 8.7E-20 169.7 31.2 358 145-562 176-638 (910)
110 KOG0305 Anaphase promoting com 99.7 3.3E-16 7.1E-21 175.7 22.3 221 142-487 229-461 (484)
111 KOG1446 Histone H3 (Lys4) meth 99.7 5.2E-15 1.1E-19 153.5 28.9 269 132-487 14-303 (311)
112 KOG0772 Uncharacterized conser 99.7 7.2E-16 1.6E-20 167.5 22.7 291 133-523 168-484 (641)
113 KOG0639 Transducin-like enhanc 99.7 2.8E-16 6E-21 169.9 19.1 267 137-524 426-702 (705)
114 KOG0267 Microtubule severing p 99.7 2.1E-17 4.5E-22 185.6 10.4 220 191-514 28-256 (825)
115 KOG0639 Transducin-like enhanc 99.7 2.2E-16 4.8E-21 170.6 16.8 235 191-524 419-661 (705)
116 KOG1036 Mitotic spindle checkp 99.7 8.5E-15 1.8E-19 151.2 26.5 251 135-477 16-294 (323)
117 KOG2096 WD40 repeat protein [G 99.7 9.7E-16 2.1E-20 158.1 17.5 101 426-526 194-308 (420)
118 KOG0646 WD40 repeat protein [G 99.7 1.2E-15 2.7E-20 164.6 18.9 233 134-467 83-327 (476)
119 KOG0264 Nucleosome remodeling 99.7 2.1E-15 4.5E-20 162.7 19.9 249 191-526 124-404 (422)
120 KOG0294 WD40 repeat-containing 99.7 8.5E-15 1.8E-19 151.4 23.6 233 232-527 34-282 (362)
121 KOG1332 Vesicle coat complex C 99.7 3.2E-15 6.9E-20 149.7 19.2 243 193-524 13-284 (299)
122 KOG2048 WD40 repeat protein [G 99.7 4.3E-14 9.2E-19 158.6 27.8 235 191-526 25-275 (691)
123 KOG1407 WD40 repeat protein [F 99.7 1.3E-14 2.8E-19 146.5 21.2 241 235-534 14-269 (313)
124 KOG0267 Microtubule severing p 99.6 1.5E-16 3.2E-21 178.8 7.8 215 205-529 6-229 (825)
125 KOG0269 WD40 repeat-containing 99.6 9.3E-16 2E-20 173.7 14.2 224 202-526 99-340 (839)
126 KOG0642 Cell-cycle nuclear pro 99.6 2.1E-15 4.5E-20 166.1 16.4 265 133-498 295-573 (577)
127 KOG0283 WD40 repeat-containing 99.6 2.1E-14 4.6E-19 165.1 24.6 198 191-487 369-576 (712)
128 KOG1036 Mitotic spindle checkp 99.6 9E-14 1.9E-18 143.8 26.5 252 192-516 14-294 (323)
129 KOG1408 WD40 repeat protein [F 99.6 1.2E-14 2.7E-19 162.5 21.2 225 191-487 459-713 (1080)
130 KOG0302 Ribosome Assembly prot 99.6 5.3E-15 1.1E-19 155.9 17.3 112 415-527 253-379 (440)
131 KOG0650 WD40 repeat nucleolar 99.6 2.8E-14 6E-19 157.7 22.9 289 188-523 398-732 (733)
132 KOG0643 Translation initiation 99.6 1.9E-14 4.1E-19 145.8 19.7 196 235-527 4-221 (327)
133 KOG0270 WD40 repeat-containing 99.6 1.4E-14 3.1E-19 155.6 19.6 228 202-530 191-453 (463)
134 KOG0268 Sof1-like rRNA process 99.6 8.1E-15 1.7E-19 153.8 15.6 257 235-564 60-328 (433)
135 KOG1063 RNA polymerase II elon 99.6 1.5E-13 3.2E-18 154.5 24.7 111 417-527 523-649 (764)
136 KOG4283 Transcription-coupled 99.6 3.7E-14 8E-19 145.2 17.6 209 239-527 41-277 (397)
137 KOG1273 WD40 repeat protein [G 99.6 3E-13 6.6E-18 139.7 22.9 271 193-527 25-323 (405)
138 KOG4283 Transcription-coupled 99.6 2.3E-13 5.1E-18 139.4 21.4 292 191-527 43-366 (397)
139 KOG1274 WD40 repeat protein [G 99.6 6.6E-13 1.4E-17 153.5 27.1 233 191-527 13-263 (933)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.2E-12 2.6E-17 141.0 27.1 216 204-527 2-238 (300)
141 KOG0649 WD40 repeat protein [G 99.6 3.7E-13 8.1E-18 134.7 20.9 245 192-525 11-273 (325)
142 KOG0642 Cell-cycle nuclear pro 99.6 3.9E-14 8.4E-19 156.2 15.3 79 191-269 294-373 (577)
143 KOG1539 WD repeat protein [Gen 99.6 1.2E-12 2.5E-17 149.9 27.3 334 135-524 247-646 (910)
144 KOG2106 Uncharacterized conser 99.6 9E-12 2E-16 135.7 32.6 294 142-524 212-519 (626)
145 KOG0270 WD40 repeat-containing 99.5 2.6E-13 5.6E-18 146.0 19.3 256 112-487 172-449 (463)
146 KOG1332 Vesicle coat complex C 99.5 3E-13 6.5E-18 135.7 18.4 237 142-490 23-291 (299)
147 KOG0264 Nucleosome remodeling 99.5 7.2E-13 1.6E-17 143.3 22.6 236 148-489 144-406 (422)
148 KOG1274 WD40 repeat protein [G 99.5 1.7E-12 3.6E-17 150.3 25.8 251 87-467 21-278 (933)
149 KOG0321 WD40 repeat-containing 99.5 6.5E-13 1.4E-17 148.1 17.0 260 202-529 63-350 (720)
150 KOG1538 Uncharacterized conser 99.5 1.3E-12 2.9E-17 145.4 19.1 261 193-526 14-293 (1081)
151 KOG1007 WD repeat protein TSSC 99.5 9.4E-12 2E-16 127.5 22.4 246 191-525 63-360 (370)
152 KOG1063 RNA polymerase II elon 99.5 1.5E-11 3.3E-16 138.5 25.9 316 144-524 26-389 (764)
153 KOG1445 Tumor-specific antigen 99.5 7.8E-12 1.7E-16 138.7 23.3 107 421-527 629-751 (1012)
154 KOG2445 Nuclear pore complex c 99.5 1.9E-11 4.1E-16 126.5 24.3 115 141-271 24-145 (361)
155 KOG0289 mRNA splicing factor [ 99.5 1.6E-11 3.5E-16 131.8 24.3 230 191-486 261-505 (506)
156 KOG0649 WD40 repeat protein [G 99.4 2.7E-11 5.8E-16 121.6 23.4 179 132-350 62-245 (325)
157 KOG2919 Guanine nucleotide-bin 99.4 1.1E-11 2.4E-16 128.8 20.5 252 194-529 52-330 (406)
158 KOG0307 Vesicle coat complex C 99.4 6.1E-13 1.3E-17 157.3 12.8 242 193-528 66-329 (1049)
159 KOG0269 WD40 repeat-containing 99.4 1.8E-12 4E-17 147.3 15.4 217 148-483 107-336 (839)
160 COG2319 FOG: WD40 repeat [Gene 99.4 1E-10 2.2E-15 128.8 29.2 235 191-528 65-316 (466)
161 KOG0644 Uncharacterized conser 99.4 7.4E-13 1.6E-17 151.0 11.8 267 191-524 190-466 (1113)
162 KOG0650 WD40 repeat nucleolar 99.4 7.6E-12 1.6E-16 138.7 19.0 257 233-528 392-682 (733)
163 KOG2106 Uncharacterized conser 99.4 2.9E-10 6.3E-15 124.2 30.6 267 191-527 200-478 (626)
164 COG2319 FOG: WD40 repeat [Gene 99.4 6.9E-10 1.5E-14 122.1 34.3 273 134-529 67-362 (466)
165 KOG4328 WD40 protein [Function 99.4 2.9E-11 6.3E-16 130.8 21.7 272 191-524 186-493 (498)
166 KOG2919 Guanine nucleotide-bin 99.4 3.8E-11 8.2E-16 124.9 21.4 221 200-517 120-361 (406)
167 KOG4378 Nuclear protein COP1 [ 99.4 1.4E-11 3.1E-16 133.7 17.5 241 148-509 54-304 (673)
168 KOG2055 WD40 repeat protein [G 99.4 3.1E-11 6.7E-16 130.6 20.0 239 191-530 213-471 (514)
169 KOG0302 Ribosome Assembly prot 99.4 1.8E-11 3.9E-16 129.5 17.0 238 191-523 151-435 (440)
170 PRK11028 6-phosphogluconolacto 99.3 6.6E-10 1.4E-14 123.1 29.5 266 148-526 9-304 (330)
171 KOG2055 WD40 repeat protein [G 99.3 2E-10 4.3E-15 124.4 23.8 271 134-526 215-512 (514)
172 KOG1034 Transcriptional repres 99.3 1.2E-11 2.7E-16 128.8 13.3 249 203-525 105-382 (385)
173 KOG0322 G-protein beta subunit 99.3 3.9E-11 8.4E-16 121.8 16.2 268 191-525 14-322 (323)
174 KOG0303 Actin-binding protein 99.3 8.9E-11 1.9E-15 124.9 19.0 126 191-347 81-210 (472)
175 KOG1034 Transcriptional repres 99.3 6.9E-11 1.5E-15 123.3 14.4 96 148-271 112-212 (385)
176 KOG1963 WD40 repeat protein [G 99.3 3.9E-09 8.4E-14 122.7 29.7 355 144-527 174-584 (792)
177 KOG1517 Guanine nucleotide bin 99.3 8E-10 1.7E-14 129.5 24.1 278 193-527 1066-1382(1387)
178 KOG0303 Actin-binding protein 99.2 3.5E-11 7.5E-16 128.0 11.2 172 415-599 77-267 (472)
179 KOG4328 WD40 protein [Function 99.2 6.6E-10 1.4E-14 120.4 21.1 158 142-340 199-399 (498)
180 KOG1188 WD40 repeat protein [G 99.2 3.5E-10 7.7E-15 118.7 18.2 257 204-525 41-345 (376)
181 KOG4378 Nuclear protein COP1 [ 99.2 4.3E-10 9.3E-15 122.4 19.0 262 144-527 5-281 (673)
182 KOG1007 WD repeat protein TSSC 99.2 5.1E-10 1.1E-14 115.0 16.8 233 211-527 38-290 (370)
183 KOG0307 Vesicle coat complex C 99.2 1.7E-10 3.7E-15 136.9 14.1 231 144-488 81-328 (1049)
184 KOG0771 Prolactin regulatory e 99.2 2.8E-10 6.1E-15 122.6 14.3 70 195-273 148-218 (398)
185 KOG1587 Cytoplasmic dynein int 99.2 5.3E-09 1.1E-13 121.2 25.7 281 149-526 220-516 (555)
186 KOG0644 Uncharacterized conser 99.2 8.1E-11 1.8E-15 134.6 9.9 260 232-550 181-450 (1113)
187 PRK01742 tolB translocation pr 99.1 2E-09 4.2E-14 123.9 19.6 208 191-508 203-425 (429)
188 KOG1240 Protein kinase contain 99.1 4E-09 8.7E-14 125.6 21.7 250 191-528 1048-1336(1431)
189 KOG1009 Chromatin assembly com 99.1 4.9E-10 1.1E-14 119.9 12.5 176 191-487 13-195 (434)
190 KOG1009 Chromatin assembly com 99.1 2.2E-08 4.8E-13 107.5 24.7 128 134-273 15-156 (434)
191 KOG1334 WD40 repeat protein [G 99.1 1.5E-09 3.2E-14 118.5 15.6 272 191-525 142-465 (559)
192 KOG1538 Uncharacterized conser 99.1 7.9E-09 1.7E-13 115.9 21.1 266 134-487 14-293 (1081)
193 KOG4227 WD40 repeat protein [G 99.1 7.3E-09 1.6E-13 110.0 19.1 284 191-524 56-385 (609)
194 PRK01742 tolB translocation pr 99.0 6E-09 1.3E-13 119.8 18.8 207 211-526 182-401 (429)
195 KOG0974 WD-repeat protein WDR6 99.0 5.1E-08 1.1E-12 115.3 26.0 111 417-527 173-289 (967)
196 KOG1273 WD40 repeat protein [G 99.0 8.6E-08 1.9E-12 99.9 24.5 259 142-487 35-322 (405)
197 KOG0771 Prolactin regulatory e 99.0 2.8E-09 6.1E-14 115.0 13.6 199 245-526 148-354 (398)
198 KOG0290 Conserved WD40 repeat- 99.0 1.5E-08 3.2E-13 104.5 17.8 112 416-527 193-319 (364)
199 PRK11028 6-phosphogluconolacto 99.0 1.2E-07 2.7E-12 105.0 26.4 242 141-487 45-304 (330)
200 KOG1445 Tumor-specific antigen 99.0 2.4E-09 5.2E-14 119.4 11.7 111 141-273 639-753 (1012)
201 PRK03629 tolB translocation pr 99.0 9.4E-08 2E-12 109.9 24.6 211 191-508 198-427 (429)
202 KOG1524 WD40 repeat-containing 98.9 5.8E-08 1.3E-12 107.1 19.5 200 203-520 75-280 (737)
203 KOG0322 G-protein beta subunit 98.9 2.7E-08 5.9E-13 101.5 14.2 257 233-535 6-290 (323)
204 KOG1240 Protein kinase contain 98.9 1.9E-07 4E-12 111.8 22.9 165 144-349 1062-1234(1431)
205 PRK04922 tolB translocation pr 98.8 3.6E-07 7.9E-12 105.3 23.0 73 191-272 203-282 (433)
206 KOG1310 WD40 repeat protein [G 98.8 1E-08 2.3E-13 113.1 7.9 130 399-528 30-180 (758)
207 KOG1188 WD40 repeat protein [G 98.8 1.3E-07 2.7E-12 99.9 15.3 96 433-528 87-198 (376)
208 KOG0974 WD-repeat protein WDR6 98.8 1.6E-07 3.4E-12 111.2 17.7 148 198-490 140-291 (967)
209 KOG4227 WD40 repeat protein [G 98.8 7.8E-07 1.7E-11 94.9 20.7 115 134-271 58-180 (609)
210 KOG1963 WD40 repeat protein [G 98.8 8.7E-07 1.9E-11 103.5 22.9 108 418-525 204-321 (792)
211 KOG1976 Inositol polyphosphate 98.7 1.2E-08 2.6E-13 105.5 6.2 128 673-837 153-333 (391)
212 KOG1517 Guanine nucleotide bin 98.7 2.9E-07 6.3E-12 108.6 17.6 158 142-348 1177-1340(1387)
213 PRK05137 tolB translocation pr 98.7 4.6E-06 1E-10 96.2 25.0 73 191-272 201-280 (435)
214 KOG0290 Conserved WD40 repeat- 98.6 3.7E-07 8E-12 94.4 13.5 114 144-273 114-230 (364)
215 KOG2110 Uncharacterized conser 98.6 6.9E-06 1.5E-10 87.8 23.1 89 439-527 152-249 (391)
216 PRK03629 tolB translocation pr 98.6 6.6E-06 1.4E-10 94.7 25.2 98 424-521 291-398 (429)
217 KOG2110 Uncharacterized conser 98.6 2.4E-06 5.3E-11 91.2 18.9 156 135-342 90-250 (391)
218 KOG1272 WD40-repeat-containing 98.6 9.7E-08 2.1E-12 104.0 8.5 100 433-532 224-329 (545)
219 KOG2394 WD40 protein DMR-N9 [G 98.6 6.8E-08 1.5E-12 106.8 7.2 87 421-507 292-383 (636)
220 TIGR03300 assembly_YfgL outer 98.6 4.8E-05 1E-09 86.0 30.2 306 138-523 61-376 (377)
221 KOG3881 Uncharacterized conser 98.6 5.6E-06 1.2E-10 89.1 20.2 105 430-534 216-328 (412)
222 PRK02889 tolB translocation pr 98.6 6.3E-06 1.4E-10 94.8 22.1 71 191-270 195-270 (427)
223 KOG2394 WD40 protein DMR-N9 [G 98.5 8.3E-07 1.8E-11 98.4 13.9 93 191-291 290-383 (636)
224 PRK05137 tolB translocation pr 98.5 1.3E-05 2.8E-10 92.5 24.8 197 214-517 183-397 (435)
225 TIGR02800 propeller_TolB tol-p 98.5 6.9E-06 1.5E-10 93.9 22.3 73 191-272 189-268 (417)
226 KOG1310 WD40 repeat protein [G 98.5 3.1E-07 6.8E-12 101.7 9.2 124 191-341 50-179 (758)
227 KOG1523 Actin-related protein 98.5 1.1E-05 2.3E-10 85.0 19.8 236 191-520 10-272 (361)
228 KOG1272 WD40-repeat-containing 98.5 3.6E-07 7.7E-12 99.7 9.0 222 195-524 133-360 (545)
229 PRK04922 tolB translocation pr 98.5 9.4E-06 2E-10 93.6 20.8 52 213-273 184-239 (433)
230 PF02239 Cytochrom_D1: Cytochr 98.4 5.5E-05 1.2E-09 85.1 25.1 295 207-563 10-339 (369)
231 KOG4190 Uncharacterized conser 98.4 7.1E-07 1.5E-11 98.5 8.9 246 191-524 735-986 (1034)
232 PF02239 Cytochrom_D1: Cytochr 98.4 0.00029 6.3E-09 79.4 30.0 97 148-274 13-112 (369)
233 KOG4547 WD40 repeat-containing 98.4 6.1E-06 1.3E-10 93.0 16.0 95 431-527 115-221 (541)
234 PF08662 eIF2A: Eukaryotic tra 98.4 2E-06 4.3E-11 88.0 11.3 103 420-526 60-179 (194)
235 KOG2111 Uncharacterized conser 98.4 8.8E-06 1.9E-10 85.6 15.6 142 121-271 83-257 (346)
236 KOG2111 Uncharacterized conser 98.4 9.7E-05 2.1E-09 77.9 23.2 72 417-488 179-257 (346)
237 TIGR02800 propeller_TolB tol-p 98.4 5.2E-05 1.1E-09 86.7 23.6 98 426-523 284-391 (417)
238 PRK02889 tolB translocation pr 98.4 6E-05 1.3E-09 86.8 24.1 96 425-520 289-394 (427)
239 KOG1354 Serine/threonine prote 98.4 2.2E-05 4.8E-10 83.2 18.2 281 191-487 25-359 (433)
240 PF08662 eIF2A: Eukaryotic tra 98.4 8.5E-06 1.8E-10 83.4 15.0 113 191-346 59-184 (194)
241 TIGR03300 assembly_YfgL outer 98.3 0.00013 2.8E-09 82.4 25.7 96 430-527 241-339 (377)
242 KOG1587 Cytoplasmic dynein int 98.3 6.1E-05 1.3E-09 87.9 21.6 93 433-526 363-472 (555)
243 PRK04792 tolB translocation pr 98.3 6.2E-05 1.3E-09 87.2 21.7 73 191-272 217-296 (448)
244 PF00400 WD40: WD domain, G-be 98.3 2E-06 4.4E-11 63.4 6.1 37 232-268 2-39 (39)
245 KOG2139 WD40 repeat protein [G 98.3 0.00036 7.8E-09 74.7 24.3 114 142-270 153-268 (445)
246 PRK00178 tolB translocation pr 98.2 0.00014 3E-09 83.8 23.5 73 191-272 198-277 (430)
247 PF03372 Exo_endo_phos: Endonu 98.2 2E-06 4.3E-11 89.4 6.7 61 642-704 72-135 (249)
248 KOG1064 RAVE (regulator of V-A 98.2 7.3E-06 1.6E-10 101.6 12.2 215 191-519 2208-2439(2439)
249 KOG0309 Conserved WD40 repeat- 98.2 9.8E-06 2.1E-10 92.8 12.3 72 194-271 70-146 (1081)
250 KOG2321 WD40 repeat protein [G 98.2 0.00013 2.9E-09 81.9 20.2 283 192-533 52-350 (703)
251 KOG3881 Uncharacterized conser 98.2 8.3E-05 1.8E-09 80.3 17.8 210 191-492 105-326 (412)
252 KOG1064 RAVE (regulator of V-A 98.2 1.4E-05 2.9E-10 99.3 13.3 91 438-538 2313-2410(2439)
253 KOG3914 WD repeat protein WDR4 98.1 1.1E-05 2.4E-10 87.3 9.7 76 191-274 151-227 (390)
254 KOG2315 Predicted translation 98.1 0.00093 2E-08 75.4 24.2 106 419-526 270-390 (566)
255 KOG4497 Uncharacterized conser 98.0 0.00027 5.8E-09 74.7 18.1 99 421-519 320-425 (447)
256 KOG1409 Uncharacterized conser 98.0 0.00025 5.5E-09 75.5 17.8 197 191-487 68-270 (404)
257 KOG1334 WD40 repeat protein [G 98.0 8.7E-05 1.9E-09 82.0 14.6 289 134-487 144-466 (559)
258 KOG1524 WD40 repeat-containing 98.0 0.00029 6.2E-09 78.6 18.5 125 396-521 117-250 (737)
259 KOG2321 WD40 repeat protein [G 98.0 0.00036 7.8E-09 78.6 19.3 131 399-530 150-306 (703)
260 PLN02919 haloacid dehalogenase 98.0 0.0019 4.1E-08 82.2 28.4 258 195-528 571-890 (1057)
261 PRK11138 outer membrane biogen 98.0 0.0031 6.7E-08 71.8 27.6 96 429-524 293-392 (394)
262 PRK00178 tolB translocation pr 98.0 0.0015 3.2E-08 75.3 24.3 93 425-517 292-394 (430)
263 KOG4547 WD40 repeat-containing 97.9 0.00026 5.5E-09 80.2 17.0 121 202-360 69-192 (541)
264 PLN02919 haloacid dehalogenase 97.9 0.0045 9.8E-08 78.8 30.3 275 137-488 572-889 (1057)
265 PRK04792 tolB translocation pr 97.9 0.002 4.4E-08 74.6 24.0 93 425-517 311-413 (448)
266 PRK11756 exonuclease III; Prov 97.9 4.3E-05 9.3E-10 82.3 9.3 127 555-718 2-135 (268)
267 KOG1523 Actin-related protein 97.9 0.00067 1.5E-08 71.8 17.4 113 417-529 98-239 (361)
268 KOG2139 WD40 repeat protein [G 97.9 0.0024 5.1E-08 68.7 21.5 124 194-345 101-231 (445)
269 PF00400 WD40: WD domain, G-be 97.8 4.1E-05 8.9E-10 56.3 5.7 37 449-485 1-39 (39)
270 PRK05421 hypothetical protein; 97.8 9.6E-05 2.1E-09 79.4 10.9 44 676-719 134-178 (263)
271 TIGR02658 TTQ_MADH_Hv methylam 97.8 0.037 7.9E-07 61.6 30.9 105 213-350 27-146 (352)
272 PF10282 Lactonase: Lactonase, 97.8 0.028 6E-07 62.9 30.0 208 191-486 86-321 (345)
273 KOG4190 Uncharacterized conser 97.8 0.00013 2.8E-09 81.1 10.5 226 144-486 750-987 (1034)
274 KOG1409 Uncharacterized conser 97.7 0.00094 2E-08 71.3 15.9 79 448-526 186-270 (404)
275 PF13360 PQQ_2: PQQ-like domai 97.7 0.0098 2.1E-07 62.1 24.0 96 430-528 122-232 (238)
276 COG5170 CDC55 Serine/threonine 97.7 0.00068 1.5E-08 71.2 14.4 77 191-270 26-117 (460)
277 KOG2695 WD40 repeat protein [G 97.6 0.00013 2.9E-09 77.5 7.8 198 99-349 185-385 (425)
278 TIGR03395 sphingomy sphingomye 97.6 0.00051 1.1E-08 74.5 12.6 76 641-719 88-169 (283)
279 KOG0280 Uncharacterized conser 97.6 0.0004 8.6E-09 72.7 10.7 103 425-527 127-242 (339)
280 PF13360 PQQ_2: PQQ-like domai 97.6 0.0083 1.8E-07 62.6 21.1 195 202-490 35-234 (238)
281 KOG3914 WD repeat protein WDR4 97.6 0.00019 4.2E-09 77.9 8.5 102 436-538 128-235 (390)
282 KOG2695 WD40 repeat protein [G 97.6 0.00012 2.5E-09 78.0 6.4 108 420-528 253-378 (425)
283 COG2706 3-carboxymuconate cycl 97.5 0.16 3.6E-06 55.1 29.5 245 191-487 39-321 (346)
284 COG3292 Predicted periplasmic 97.5 0.0054 1.2E-07 69.8 19.1 297 119-481 197-526 (671)
285 PF08450 SGL: SMP-30/Gluconola 97.5 0.066 1.4E-06 56.6 27.0 56 421-476 185-244 (246)
286 TIGR02658 TTQ_MADH_Hv methylam 97.5 0.066 1.4E-06 59.7 27.2 69 425-494 253-338 (352)
287 PF10282 Lactonase: Lactonase, 97.5 0.11 2.4E-06 58.0 29.4 252 192-526 37-322 (345)
288 COG5354 Uncharacterized protei 97.4 0.049 1.1E-06 61.3 24.1 109 419-527 274-396 (561)
289 TIGR00633 xth exodeoxyribonucl 97.3 0.0011 2.4E-08 70.5 10.4 124 555-718 2-133 (255)
290 PRK01029 tolB translocation pr 97.3 0.023 5.1E-07 65.5 22.0 66 424-489 331-405 (428)
291 KOG1354 Serine/threonine prote 97.3 0.0048 1E-07 66.0 14.0 104 422-526 216-359 (433)
292 TIGR00195 exoDNase_III exodeox 97.3 0.0015 3.2E-08 69.7 10.4 36 555-594 2-37 (254)
293 PRK01029 tolB translocation pr 97.2 0.038 8.3E-07 63.7 22.2 103 424-526 285-403 (428)
294 KOG2315 Predicted translation 97.0 0.061 1.3E-06 61.2 20.2 70 423-492 315-395 (566)
295 KOG4497 Uncharacterized conser 97.0 0.008 1.7E-07 63.9 12.1 207 197-485 14-238 (447)
296 COG4946 Uncharacterized protei 97.0 0.81 1.8E-05 51.4 27.7 125 191-348 359-485 (668)
297 PRK13911 exodeoxyribonuclease 97.0 0.0074 1.6E-07 64.3 12.0 37 555-595 2-39 (250)
298 PRK11138 outer membrane biogen 96.9 0.23 5E-06 56.5 25.0 95 430-527 256-354 (394)
299 smart00476 DNaseIc deoxyribonu 96.9 0.007 1.5E-07 65.1 11.7 128 553-701 17-154 (276)
300 COG3292 Predicted periplasmic 96.9 0.072 1.6E-06 61.0 19.2 112 125-266 157-271 (671)
301 KOG2756 Predicted Mg2+-depende 96.9 0.0085 1.8E-07 62.1 10.8 64 680-777 195-258 (349)
302 PF08450 SGL: SMP-30/Gluconola 96.8 0.73 1.6E-05 48.6 26.0 87 420-506 134-232 (246)
303 KOG0280 Uncharacterized conser 96.8 0.012 2.6E-07 61.9 11.6 115 194-341 124-242 (339)
304 PRK04043 tolB translocation pr 96.8 0.18 4E-06 57.9 22.6 71 193-272 189-267 (419)
305 KOG2041 WD40 repeat protein [G 96.8 0.09 1.9E-06 61.2 19.0 78 193-270 16-101 (1189)
306 KOG4714 Nucleoporin [Nuclear s 96.8 0.0017 3.6E-08 67.1 4.9 72 193-271 181-255 (319)
307 KOG0309 Conserved WD40 repeat- 96.7 0.0049 1.1E-07 71.4 8.9 68 196-271 163-233 (1081)
308 smart00320 WD40 WD40 repeats. 96.7 0.0038 8.1E-08 43.4 5.0 37 232-268 3-40 (40)
309 COG3568 ElsH Metal-dependent h 96.7 0.017 3.6E-07 61.0 11.6 55 657-718 101-158 (259)
310 PF15492 Nbas_N: Neuroblastoma 96.6 0.18 3.9E-06 53.4 18.9 66 195-269 47-126 (282)
311 COG4946 Uncharacterized protei 96.5 0.99 2.1E-05 50.7 24.3 108 419-526 359-477 (668)
312 KOG1912 WD40 repeat protein [G 96.4 0.47 1E-05 56.1 22.1 110 142-279 25-152 (1062)
313 COG0708 XthA Exonuclease III [ 96.4 0.015 3.3E-07 61.4 9.4 110 555-703 2-113 (261)
314 PRK04043 tolB translocation pr 96.2 1.4 3E-05 50.8 25.1 99 426-524 283-396 (419)
315 PLN03144 Carbon catabolite rep 96.2 0.022 4.8E-07 67.4 10.6 31 689-719 417-447 (606)
316 COG2706 3-carboxymuconate cycl 96.2 2.5 5.5E-05 46.2 27.3 117 193-341 90-222 (346)
317 PF11768 DUF3312: Protein of u 96.2 0.02 4.4E-07 65.7 9.7 71 191-271 259-330 (545)
318 COG5170 CDC55 Serine/threonine 96.1 0.097 2.1E-06 55.5 13.3 110 422-532 224-373 (460)
319 KOG1645 RING-finger-containing 96.1 0.11 2.4E-06 57.1 14.0 73 191-272 193-268 (463)
320 KOG4714 Nucleoporin [Nuclear s 95.9 0.011 2.4E-07 61.3 4.9 66 461-526 181-254 (319)
321 PF14783 BBS2_Mid: Ciliary BBS 95.8 0.28 6E-06 45.1 13.4 89 428-520 11-108 (111)
322 PF07433 DUF1513: Protein of u 95.8 2.3 5E-05 46.3 22.6 68 197-270 10-85 (305)
323 PF15492 Nbas_N: Neuroblastoma 95.8 1.4 3E-05 46.9 20.3 68 197-271 3-74 (282)
324 KOG2066 Vacuolar assembly/sort 95.8 0.1 2.2E-06 61.8 12.9 95 430-527 82-188 (846)
325 KOG2314 Translation initiation 95.7 2.6 5.6E-05 48.5 23.0 69 195-274 214-294 (698)
326 KOG1912 WD40 repeat protein [G 95.6 0.1 2.2E-06 61.4 12.0 47 205-259 439-485 (1062)
327 KOG2444 WD40 repeat protein [G 95.5 0.03 6.4E-07 57.4 6.6 98 430-527 70-178 (238)
328 smart00320 WD40 WD40 repeats. 95.4 0.038 8.3E-07 38.0 5.2 36 450-485 3-40 (40)
329 KOG1275 PAB-dependent poly(A) 95.4 0.05 1.1E-06 65.0 8.5 96 433-528 150-256 (1118)
330 KOG4532 WD40-like repeat conta 95.2 1.2 2.6E-05 46.9 17.0 73 194-271 161-234 (344)
331 KOG2114 Vacuolar assembly/sort 95.2 1.3 2.9E-05 53.1 19.6 80 420-501 172-259 (933)
332 KOG2066 Vacuolar assembly/sort 95.0 0.5 1.1E-05 56.2 15.2 110 200-350 80-197 (846)
333 KOG2338 Transcriptional effect 94.9 0.059 1.3E-06 61.0 7.2 74 646-719 204-282 (495)
334 KOG3621 WD40 repeat-containing 94.7 9.4 0.0002 45.4 24.2 115 135-271 38-155 (726)
335 PRK15251 cytolethal distending 94.6 0.38 8.2E-06 51.4 12.1 39 675-719 140-178 (271)
336 PF07433 DUF1513: Protein of u 94.6 3.7 8E-05 44.7 19.6 55 197-258 56-116 (305)
337 COG3386 Gluconolactonase [Carb 94.6 5.9 0.00013 43.5 21.7 56 422-477 215-275 (307)
338 PF04762 IKI3: IKI3 family; I 94.4 14 0.0003 47.0 26.9 68 191-268 75-148 (928)
339 KOG4649 PQQ (pyrrolo-quinoline 94.1 9.3 0.0002 40.3 23.5 111 126-265 46-160 (354)
340 KOG2041 WD40 repeat protein [G 93.9 3.6 7.7E-05 48.6 18.3 108 148-269 33-144 (1189)
341 KOG0882 Cyclophilin-related pe 93.8 0.49 1.1E-05 52.8 10.9 75 191-271 9-85 (558)
342 KOG3621 WD40 repeat-containing 93.6 13 0.00028 44.2 22.5 67 198-271 40-107 (726)
343 PF11768 DUF3312: Protein of u 93.4 0.25 5.5E-06 57.0 8.4 68 419-487 259-329 (545)
344 COG5354 Uncharacterized protei 93.4 6.2 0.00013 45.1 18.9 49 479-527 255-307 (561)
345 KOG1645 RING-finger-containing 93.2 0.28 6E-06 54.0 7.9 88 417-505 191-288 (463)
346 COG3386 Gluconolactonase [Carb 93.0 9.2 0.0002 42.1 19.6 97 419-515 162-274 (307)
347 KOG2444 WD40 repeat protein [G 92.6 0.41 8.8E-06 49.3 7.7 107 138-271 66-178 (238)
348 PF14783 BBS2_Mid: Ciliary BBS 92.6 0.78 1.7E-05 42.2 8.7 55 204-269 16-70 (111)
349 PF04053 Coatomer_WDAD: Coatom 92.4 26 0.00056 40.6 23.0 61 193-267 34-94 (443)
350 PF00780 CNH: CNH domain; Int 92.0 19 0.00042 38.3 24.5 61 141-223 6-66 (275)
351 KOG1832 HIV-1 Vpr-binding prot 91.8 0.11 2.5E-06 61.7 3.0 73 191-271 1101-1176(1516)
352 KOG3873 Sphingomyelinase famil 91.7 0.36 7.7E-06 52.6 6.3 122 622-780 58-188 (422)
353 KOG2114 Vacuolar assembly/sort 91.7 3.3 7.2E-05 50.0 14.7 127 191-349 125-252 (933)
354 KOG1920 IkappaB kinase complex 91.6 40 0.00087 42.8 23.9 105 424-528 200-324 (1265)
355 PTZ00297 pantothenate kinase; 91.6 1.9 4.2E-05 56.7 14.0 69 644-717 103-177 (1452)
356 PF08553 VID27: VID27 cytoplas 91.0 5.3 0.00011 49.1 15.9 65 421-486 579-646 (794)
357 KOG2079 Vacuolar assembly/sort 90.8 0.5 1.1E-05 57.9 7.0 69 191-269 130-202 (1206)
358 KOG4640 Anaphase-promoting com 90.7 0.81 1.8E-05 53.2 8.3 73 192-273 21-95 (665)
359 KOG2079 Vacuolar assembly/sort 90.2 0.53 1.2E-05 57.7 6.5 91 433-525 102-202 (1206)
360 KOG3617 WD40 and TPR repeat-co 90.2 1.8 3.9E-05 51.9 10.5 68 194-270 62-131 (1416)
361 KOG4532 WD40-like repeat conta 89.7 14 0.00031 39.1 15.5 76 193-272 205-284 (344)
362 KOG1832 HIV-1 Vpr-binding prot 89.6 0.25 5.4E-06 59.0 3.1 117 415-537 1097-1225(1516)
363 PF04841 Vps16_N: Vps16, N-ter 89.5 45 0.00097 38.3 26.1 49 214-271 62-110 (410)
364 PF08553 VID27: VID27 cytoplas 89.0 1.6 3.6E-05 53.4 9.6 93 432-525 544-646 (794)
365 KOG1275 PAB-dependent poly(A) 89.0 1.1 2.3E-05 54.2 7.7 55 433-487 190-254 (1118)
366 PF12894 Apc4_WD40: Anaphase-p 88.5 1.2 2.6E-05 34.4 5.2 32 191-222 11-42 (47)
367 KOG2314 Translation initiation 87.6 3.3 7.2E-05 47.6 10.1 106 424-533 215-341 (698)
368 PF06433 Me-amine-dh_H: Methyl 87.3 53 0.0011 36.5 20.3 106 213-352 17-138 (342)
369 cd00216 PQQ_DH Dehydrogenases 87.2 68 0.0015 37.7 26.5 69 203-279 61-137 (488)
370 KOG0882 Cyclophilin-related pe 86.8 13 0.00028 42.0 13.8 165 186-351 140-316 (558)
371 KOG4640 Anaphase-promoting com 86.5 3.2 6.9E-05 48.6 9.3 85 423-507 24-114 (665)
372 PRK13616 lipoprotein LpqB; Pro 86.3 36 0.00078 41.0 18.6 62 423-484 500-565 (591)
373 PF14870 PSII_BNR: Photosynthe 84.0 23 0.0005 38.8 14.3 66 191-268 144-213 (302)
374 KOG2395 Protein involved in va 83.2 4.1 9E-05 46.8 8.1 90 434-524 398-498 (644)
375 PRK02888 nitrous-oxide reducta 78.3 54 0.0012 39.3 15.5 68 420-487 321-404 (635)
376 cd00216 PQQ_DH Dehydrogenases 77.5 1.5E+02 0.0033 34.7 28.3 31 465-495 402-433 (488)
377 KOG1916 Nuclear protein, conta 75.9 3.2 6.9E-05 50.3 4.6 92 436-527 201-324 (1283)
378 PF00780 CNH: CNH domain; Int 74.3 1.2E+02 0.0027 32.0 24.2 62 201-272 5-66 (275)
379 PRK02888 nitrous-oxide reducta 73.3 38 0.00083 40.6 12.5 33 242-274 321-355 (635)
380 KOG4649 PQQ (pyrrolo-quinoline 72.2 1.4E+02 0.0031 31.8 24.6 107 203-350 23-133 (354)
381 COG3490 Uncharacterized protei 70.2 1.4E+02 0.0029 32.5 14.3 62 198-267 120-186 (366)
382 COG0823 TolB Periplasmic compo 68.3 12 0.00027 43.0 7.1 101 424-527 242-354 (425)
383 KOG1916 Nuclear protein, conta 66.9 4.3 9.3E-05 49.3 2.9 90 440-529 153-268 (1283)
384 PF12894 Apc4_WD40: Anaphase-p 66.0 15 0.00033 28.4 4.9 29 241-269 11-40 (47)
385 PF14583 Pectate_lyase22: Olig 65.5 2.4E+02 0.0053 32.0 24.6 67 199-274 43-114 (386)
386 PF04841 Vps16_N: Vps16, N-ter 64.7 69 0.0015 36.8 12.2 50 441-490 62-112 (410)
387 PLN00033 photosystem II stabil 64.0 2.5E+02 0.0055 32.1 16.4 127 396-523 251-396 (398)
388 KOG1900 Nuclear pore complex, 63.1 67 0.0014 41.3 12.2 67 419-487 178-272 (1311)
389 PF03178 CPSF_A: CPSF A subuni 62.4 1.1E+02 0.0025 33.4 13.2 104 421-526 90-202 (321)
390 PF04053 Coatomer_WDAD: Coatom 59.8 79 0.0017 36.7 11.6 96 424-525 73-172 (443)
391 PF04762 IKI3: IKI3 family; I 59.6 4.8E+02 0.01 33.4 27.8 106 423-529 213-336 (928)
392 PF14655 RAB3GAP2_N: Rab3 GTPa 58.1 45 0.00097 38.3 9.0 38 469-506 79-116 (415)
393 PF05694 SBP56: 56kDa selenium 57.0 2.3E+02 0.005 32.7 14.1 28 421-448 313-342 (461)
394 PF08596 Lgl_C: Lethal giant l 55.4 80 0.0017 36.1 10.5 70 191-269 86-172 (395)
395 KOG2377 Uncharacterized conser 55.2 3.1E+02 0.0066 31.7 14.4 131 119-271 10-141 (657)
396 KOG2395 Protein involved in va 52.9 36 0.00078 39.5 7.0 68 193-269 432-499 (644)
397 PF07569 Hira: TUP1-like enhan 51.3 69 0.0015 33.4 8.5 75 135-222 15-96 (219)
398 PF08596 Lgl_C: Lethal giant l 50.9 4.3E+02 0.0093 30.2 24.0 79 193-271 3-116 (395)
399 PF10313 DUF2415: Uncharacteri 49.8 43 0.00093 25.5 4.8 32 192-223 1-35 (43)
400 PF07494 Reg_prop: Two compone 49.6 32 0.0007 22.4 3.6 21 241-261 4-24 (24)
401 PF03178 CPSF_A: CPSF A subuni 48.9 1.6E+02 0.0035 32.2 11.5 116 127-270 83-202 (321)
402 KOG3870 Uncharacterized conser 48.9 6.6 0.00014 43.8 0.4 17 759-775 349-365 (434)
403 PF14655 RAB3GAP2_N: Rab3 GTPa 46.3 1.1E+02 0.0023 35.3 9.6 76 191-274 307-402 (415)
404 PF07569 Hira: TUP1-like enhan 45.1 1.2E+02 0.0027 31.5 9.3 73 192-269 13-94 (219)
405 PF05096 Glu_cyclase_2: Glutam 42.7 4.6E+02 0.01 28.2 20.2 79 242-350 45-128 (264)
406 PF11715 Nup160: Nucleoporin N 41.1 48 0.001 39.5 6.2 31 193-223 216-250 (547)
407 COG4257 Vgb Streptogramin lyas 40.6 4.6E+02 0.01 28.4 12.3 25 424-448 108-132 (353)
408 KOG4499 Ca2+-binding protein R 40.2 1.8E+02 0.0039 30.6 9.1 85 425-509 163-264 (310)
409 COG3391 Uncharacterized conser 39.4 6.1E+02 0.013 28.6 14.7 69 193-271 117-191 (381)
410 KOG3616 Selective LIM binding 39.3 55 0.0012 39.4 5.9 69 193-271 16-84 (1636)
411 PF08728 CRT10: CRT10; InterP 39.3 2.1E+02 0.0045 35.2 10.9 113 148-269 121-245 (717)
412 PF06433 Me-amine-dh_H: Methyl 39.3 1.4E+02 0.003 33.3 8.7 69 197-274 243-324 (342)
413 PF05096 Glu_cyclase_2: Glutam 39.0 5.2E+02 0.011 27.8 12.8 105 422-527 47-158 (264)
414 PF10168 Nup88: Nuclear pore c 38.0 5.5E+02 0.012 31.9 14.5 78 193-271 86-180 (717)
415 KOG4499 Ca2+-binding protein R 37.9 82 0.0018 33.1 6.3 45 426-470 218-264 (310)
416 PF12341 DUF3639: Protein of u 37.7 74 0.0016 21.7 3.9 24 461-484 3-26 (27)
417 TIGR03118 PEPCTERM_chp_1 conse 36.3 6.3E+02 0.014 27.9 21.9 65 434-499 216-292 (336)
418 KOG1900 Nuclear pore complex, 36.3 1.8E+02 0.0039 37.7 9.9 33 239-271 240-273 (1311)
419 PF07995 GSDH: Glucose / Sorbo 36.0 3.2E+02 0.007 30.2 11.4 57 421-477 3-71 (331)
420 TIGR03075 PQQ_enz_alc_DH PQQ-d 35.5 1.3E+02 0.0028 35.9 8.5 26 253-278 473-498 (527)
421 KOG1008 Uncharacterized conser 34.8 18 0.00039 42.7 1.2 96 149-269 127-224 (783)
422 PRK13616 lipoprotein LpqB; Pro 34.5 1.9E+02 0.0041 35.0 9.7 94 420-515 350-466 (591)
423 TIGR02604 Piru_Ver_Nterm putat 32.5 2E+02 0.0043 32.4 9.1 73 193-270 15-99 (367)
424 PRK13684 Ycf48-like protein; P 32.3 1.7E+02 0.0037 32.4 8.4 63 191-266 172-239 (334)
425 PF10647 Gmad1: Lipoprotein Lp 31.9 5.6E+02 0.012 27.1 12.0 65 193-268 25-93 (253)
426 PF14870 PSII_BNR: Photosynthe 31.7 7.3E+02 0.016 27.3 16.8 102 419-520 144-255 (302)
427 PF11715 Nup160: Nucleoporin N 30.8 55 0.0012 39.0 4.4 29 429-457 229-258 (547)
428 PLN00033 photosystem II stabil 30.8 7.6E+02 0.016 28.3 13.3 64 421-484 329-396 (398)
429 PF14761 HPS3_N: Hermansky-Pud 30.7 6.4E+02 0.014 26.3 12.8 127 204-341 29-164 (215)
430 KOG1920 IkappaB kinase complex 30.5 3.5E+02 0.0076 34.9 11.0 72 195-271 245-323 (1265)
431 KOG4441 Proteins containing BT 30.4 1.9E+02 0.004 34.9 8.8 91 440-530 444-545 (571)
432 COG5276 Uncharacterized conser 28.8 7.1E+02 0.015 27.3 11.5 95 433-528 99-201 (370)
433 PF10313 DUF2415: Uncharacteri 28.2 1.4E+02 0.0031 22.7 4.6 30 242-271 1-34 (43)
434 KOG4441 Proteins containing BT 28.2 2.2E+02 0.0049 34.2 8.9 101 433-533 336-454 (571)
435 TIGR03075 PQQ_enz_alc_DH PQQ-d 26.8 1.1E+03 0.024 27.9 26.5 69 203-279 120-198 (527)
436 TIGR03074 PQQ_membr_DH membran 26.7 1.3E+03 0.029 28.8 17.5 68 203-279 260-353 (764)
437 PHA02713 hypothetical protein; 26.7 2.4E+02 0.0053 33.7 8.9 78 441-518 433-523 (557)
438 PF07676 PD40: WD40-like Beta 26.6 2.1E+02 0.0047 20.3 5.4 27 241-267 8-38 (39)
439 KOG1008 Uncharacterized conser 26.5 42 0.00091 39.8 2.3 85 439-524 128-223 (783)
440 PRK13684 Ycf48-like protein; P 25.6 9.4E+02 0.02 26.6 15.1 105 420-524 215-329 (334)
441 COG3490 Uncharacterized protei 25.5 4.1E+02 0.009 28.9 9.1 57 426-484 120-186 (366)
442 COG0823 TolB Periplasmic compo 24.9 2.7E+02 0.0058 32.2 8.5 102 421-524 194-310 (425)
443 KOG3617 WD40 and TPR repeat-co 23.6 1.1E+02 0.0025 37.5 5.0 88 439-527 40-132 (1416)
444 PF14529 Exo_endo_phos_2: Endo 22.8 61 0.0013 29.3 2.3 13 764-776 32-44 (119)
445 PF03022 MRJP: Major royal jel 22.6 7.2E+02 0.016 26.9 10.9 73 422-494 3-104 (287)
446 TIGR02276 beta_rpt_yvtn 40-res 22.5 2.9E+02 0.0063 19.6 5.7 23 201-223 1-24 (42)
447 COG2133 Glucose/sorbosone dehy 22.3 1.5E+02 0.0033 33.8 5.6 65 193-258 178-256 (399)
448 PF10515 APP_amyloid: beta-amy 22.0 32 0.00069 27.1 0.2 6 822-827 45-50 (52)
449 PF10647 Gmad1: Lipoprotein Lp 21.3 9.8E+02 0.021 25.2 11.6 93 421-515 25-130 (253)
450 PF12234 Rav1p_C: RAVE protein 20.3 1E+03 0.023 28.9 12.3 128 440-588 1-145 (631)
451 smart00564 PQQ beta-propeller 20.1 1.7E+02 0.0036 19.8 3.6 22 430-451 6-28 (33)
No 1
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-65 Score=579.24 Aligned_cols=276 Identities=33% Similarity=0.565 Sum_probs=249.7
Q ss_pred CCCCeeeccccCCCCCcchhhhhhcccccccccccceeEEEEEEEeCCCCCC-cccccccccCC--C---CCceEEEEEe
Q 003171 516 NHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRAS-QDALISWLGSA--A---SDVGIVVVGL 589 (842)
Q Consensus 516 ~DgtIrvWd~~~~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~~-~~~l~~~l~~~--~---~~~di~vigl 589 (842)
.|..+.+ ++|+...+.++|.+++.+|+...+++||+||||||+..+. .++|.+||... . ..+|||||||
T Consensus 506 ~q~~v~L-----~dpv~~yv~~~L~er~~eyt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~ 580 (1080)
T KOG0566|consen 506 AQSAVIL-----YDPVHEYVLKELRERRSEYTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGF 580 (1080)
T ss_pred ccchhhh-----cCchhHHHHHHHHHhhhhhccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEee
Confidence 3555544 4568888999999999999999999999999999995443 36899999864 1 2489999999
Q ss_pred ecc-cCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccC-CCceEEEeeeeceeeEEEEEEeccccCccCceeeceee
Q 003171 590 QEV-EMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDD-GSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVP 667 (842)
Q Consensus 590 QE~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~-~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~ 667 (842)
||+ ++++|.+.. .+....+.|++.|+++|+. ...|+++.|.||+|++|++|+|.+..++|++|+.+++|
T Consensus 581 eEvVeLnag~iv~---------As~tk~~~Wee~i~~~Ln~~~~kYvlL~s~QlvGv~L~iF~r~~~~p~Ik~V~~~tkK 651 (1080)
T KOG0566|consen 581 EEVVELNAGNIVS---------ASTTKRRFWEEKILKTLNRYKNKYVLLRSEQLVGVCLLLFIRPDHAPYIKDVAGDTKK 651 (1080)
T ss_pred hhhhhcCccceec---------cChHHHHHHHHHHHHHhcCCCCceEEEehhhhheeeEEEEEcccccchhhhcccceee
Confidence 997 688875421 1234568999999999987 78999999999999999999999999999999999999
Q ss_pred cccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcchHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCC
Q 003171 668 CGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNP 747 (842)
Q Consensus 668 ~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (842)
|||||+.||||||+|||.+++|+|||||+||||+++|+++||.||.+|.++|+|++..
T Consensus 652 TGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~snv~ERn~DY~tI~r~l~Fp~Gr---------------------- 709 (1080)
T KOG0566|consen 652 TGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSNVEERNEDYKTIARKLRFPRGR---------------------- 709 (1080)
T ss_pred cccccccCCCceEEEEEEeccccEEEEecccccccchHhhhhhhHHHHHHhccccCCc----------------------
Confidence 9999999999999999999999999999999999999999999999999999999753
Q ss_pred CCCCccCCCCCcCcccEEEEeccceeeecCCChHHHHHHhhhcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCccc
Q 003171 748 LSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKF 827 (842)
Q Consensus 748 ~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~ 827 (842)
.|.+||+|||||||||||++ ++||++++|.+++|+.|+++|||+++|.+|.+|.||.|++|+|+|||||
T Consensus 710 ----------~I~~HD~ifW~GDFNYRI~l-~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKy 778 (1080)
T KOG0566|consen 710 ----------MIFSHDYIFWLGDFNYRIDL-SNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKY 778 (1080)
T ss_pred ----------cccCCceEEEecccceeecC-CHHHHHHHHHhccHHHHhhHHHHHHHHhcCcccccccccccccCCcccc
Confidence 36789999999999999996 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccccCC
Q 003171 828 EKHLAGLAEACSCL 841 (842)
Q Consensus 828 ~~~~~~~~~Ydt~~ 841 (842)
|.|| +.||||.
T Consensus 779 D~gT---d~YDTSe 789 (1080)
T KOG0566|consen 779 DPGT---DDYDTSE 789 (1080)
T ss_pred cCCC---Cccccch
Confidence 9998 7999985
No 2
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=5.7e-58 Score=511.92 Aligned_cols=192 Identities=32% Similarity=0.587 Sum_probs=172.0
Q ss_pred hhHHHHHhhhccCCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEee
Q 003171 617 HWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNC 696 (842)
Q Consensus 617 ~~w~~~l~~~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~ 696 (842)
|+|...+.........|++|.|.+|+||+|+||||+++.++|++|+++.|+||++|++||||||+|||+|++++||||||
T Consensus 348 ~~~~~~~~~~~~~~~~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~ 427 (621)
T PLN03191 348 QLPEDLIKDCRKVKQKYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCS 427 (621)
T ss_pred hhhhHHHHhhccCCCCEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEe
Confidence 34555555555556789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCcc--hHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCcccEEEEeccceee
Q 003171 697 HFAAHLE--AVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYR 774 (842)
Q Consensus 697 HLaa~~~--~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyR 774 (842)
|||||++ ++++||+||.+|++++.|...... .....|.+||+||||||||||
T Consensus 428 HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~--------------------------~~~~~I~dhD~vFWlGDLNYR 481 (621)
T PLN03191 428 HLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDT--------------------------DQPQTIPSHDQIFWFGDLNYR 481 (621)
T ss_pred ccccccccchHHHHHHHHHHHHhccccCccccc--------------------------CCCccccccceEEEecCcccc
Confidence 9999875 578999999999999999742211 001236789999999999999
Q ss_pred ecCCChHHHHHHhhhcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccccCCCCCCccc
Q 003171 775 LDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAEAC 838 (842)
Q Consensus 775 i~~~~~~~~~~~i~~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~Yd 838 (842)
|++ ++++++++|++++|+.|+++|||+++|++|++|.||.|++|+|||||||++|+ +.||
T Consensus 482 Idl-~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~GF~Eg~I~FpPTYKYd~gS---d~Yd 541 (621)
T PLN03191 482 LNM-LDTEVRKLVAQKRWDELINSDQLIKELRSGHVFDGWKEGPIKFPPTYKYEINS---DRYV 541 (621)
T ss_pred ccC-CHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccCCcccCCccCCCCcccccCC---cccc
Confidence 996 89999999999999999999999999999999999999999999999999998 6787
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=1.9e-56 Score=486.29 Aligned_cols=247 Identities=36% Similarity=0.640 Sum_probs=219.0
Q ss_pred ceeEEEEEEEeCCCC-CCcccccccccCC-----CCCceEEEEEeecc-cCccchhhhhhhhhhcccCCCcchhhHHHHH
Q 003171 551 NLKILAGTWNVGQGR-ASQDALISWLGSA-----ASDVGIVVVGLQEV-EMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623 (842)
Q Consensus 551 ~~~i~~~twNv~~~~-~~~~~l~~~l~~~-----~~~~di~viglQE~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l 623 (842)
+++|+++|||||+.+ +++++|.+||... ..+||||||||||+ ++.+..+.+ ..+.....|.+.+
T Consensus 2 ~~~v~v~TwNv~~~~~~p~~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~---------~~~~~~~~W~~~i 72 (310)
T smart00128 2 DIKVLVGTWNVGGLKADPKVDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLE---------TIAGKERLWSKLI 72 (310)
T ss_pred ceEEEEEEEECCCccCCChhhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhh---------ccchhHHHHHHHH
Confidence 478999999999875 5678899999853 25689999999999 554432211 2234568899999
Q ss_pred hhhccCCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcc
Q 003171 624 GKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (842)
Q Consensus 624 ~~~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~ 703 (842)
...|..+..|.++++.+|+||+|+||+|+++.++|++|+++.+++|+++.+||||||+++|++.+++||||||||+||++
T Consensus 73 ~~~l~~~~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~ 152 (310)
T smart00128 73 ESSLNGDGQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGAS 152 (310)
T ss_pred HHhcCCCCceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccc
Confidence 99997568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCcccEEEEeccceeeecCCCh-HH
Q 003171 704 AVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITY-DE 782 (842)
Q Consensus 704 ~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~-~~ 782 (842)
++++||+||+.|++++.|+.... ..+.++|++||||||||||++ ++ ++
T Consensus 153 ~~~~R~~~~~~I~~~~~f~~~~~------------------------------~~~~~~d~~f~~GDlNyRi~~-~~~~~ 201 (310)
T smart00128 153 NVEQRNQDYKTILRALSFPERAE------------------------------LSQFDHDVVFWFGDLNFRLDS-PSYEE 201 (310)
T ss_pred hhhhhHHHHHHHHHhcCCCCCcc------------------------------ccccccceEEEecCcceeecC-CCHHH
Confidence 99999999999999998875321 114579999999999999997 55 89
Q ss_pred HHHHhhhcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccc-cCCCCCCccccC
Q 003171 783 ARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE-KHLAGLAEACSC 840 (842)
Q Consensus 783 ~~~~i~~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~-~~~~~~~~Ydt~ 840 (842)
++++|++++|+.|+++|||+.+|+++++|.||.|++|+|||||||+ .++ ++|||+
T Consensus 202 v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~~t---~~Yd~~ 257 (310)
T smart00128 202 VRRKISKKEFDDLLEKDQLNRQKEAGKVFKGFQEGPITFPPTYKYDSVGT---ETYDTS 257 (310)
T ss_pred HHHHHhhCcHHHHhhhhhHHHHhhcccccCcCccCCcCCCCCeeecCCCC---ccccCc
Confidence 9999999999999999999999999999999999999999999999 776 789998
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-48 Score=414.01 Aligned_cols=270 Identities=31% Similarity=0.455 Sum_probs=239.2
Q ss_pred CCCCCcchhhhhhcccccccccccceeEEEEEEEeCCCCCCcccccccccC---CCCCceEEEEEeecc-cCccchhhhh
Q 003171 527 SPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGS---AASDVGIVVVGLQEV-EMGAGFLAMS 602 (842)
Q Consensus 527 ~~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~~~~~l~~~l~~---~~~~~di~viglQE~-~~~~~~~~~~ 602 (842)
.|+|..-.+.+.+.+++..|....++.+|++++|.+++.+ ...++.||.+ ...-+|+||+||||+ ++.++.+. +
T Consensus 5 i~~p~~~y~~~~l~~~~sk~~~~~~~~~f~~~~n~~~~~~-k~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sil-s 82 (460)
T COG5411 5 IYDPRHPYIVAVLRQRRSKYVIEKDVSIFVSTFNPPGKPP-KASTKRWLFPEIEATELADLYVVGLQEVVELTPGSIL-S 82 (460)
T ss_pred ccCCCchhHHHHHHHHhhhheeecceeeEeccccCCCCCc-hhhhhhhcccccccccccceEEeccceeeeccchhhc-c
Confidence 4567777788888889999999999999999999998766 7788999986 234589999999997 56665431 1
Q ss_pred hhhhhcccCCCcchhhHHHHHhhhcc---CCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCe
Q 003171 603 AAKETVGLEGSAVGHWWLDMIGKILD---DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGA 679 (842)
Q Consensus 603 ~~~~~~~~~~~~~~~~w~~~l~~~l~---~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~ 679 (842)
.......+.|+..+...|+ ....|.++.+.||+|+.+.||.+.+..+.+.+|+...-+||+||..+|||+
T Consensus 83 -------~~p~~rl~~wes~~~~~Ln~~~~~eky~~l~s~q~~~~~~~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGa 155 (460)
T COG5411 83 -------ADPYDRLRIWESKVLDCLNGAQSDEKYSLLRSPQLGGILLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGA 155 (460)
T ss_pred -------CCcccccchhHHHHHHHhcccccCCceEEecchhccCcceEEeeeccccceeccccccccccccceecccccc
Confidence 1112344789999999887 357899999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCeEEEEEeecCcCCcchHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCc
Q 003171 680 VGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPEL 759 (842)
Q Consensus 680 v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (842)
|+++|.+.++.+|||||||+||.+|+++|+.||+.|.+.++|.+.. .+
T Consensus 156 v~i~~~~~~t~~cFv~shlaag~~N~eeR~~Dy~~I~~~i~f~~g~--------------------------------~I 203 (460)
T COG5411 156 VAIRFNYERTSFCFVNSHLAAGVNNIEERIFDYRSIASNICFSRGL--------------------------------RI 203 (460)
T ss_pred cceeEEeecCCcEEEecchhcccccHHHHHHHHHHHHHheecCCCc--------------------------------ee
Confidence 9999999999999999999999999999999999999999998643 26
Q ss_pred CcccEEEEeccceeeecCCChHHHHHHhhhcc--hHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccccCCCCCCcc
Q 003171 760 SEADMVIFLGDFNYRLDGITYDEARDFISQRC--FDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAEA 837 (842)
Q Consensus 760 ~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~--~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~Y 837 (842)
.+||++||+|||||||.+ ++++++..+.... +++|+++|||.+||+.|++|.||.|..|+|||||||+.|+ ++|
T Consensus 204 ~~hdti~w~GDlNyRVts-~~e~v~~~~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~gt---~~y 279 (460)
T COG5411 204 YDHDTIFWLGDLNYRVTS-TNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDYGT---DEY 279 (460)
T ss_pred cccceEEEecccCceeec-CchhcchhhhCCcchhhhhhhhhhHhhhhcccccccceecccccCCCceEeecCC---ccc
Confidence 789999999999999997 8999998887766 8899999999999999999999999999999999999998 799
Q ss_pred ccCC
Q 003171 838 CSCL 841 (842)
Q Consensus 838 dt~~ 841 (842)
||++
T Consensus 280 dtsd 283 (460)
T COG5411 280 DTSD 283 (460)
T ss_pred cccc
Confidence 9986
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.7e-40 Score=341.47 Aligned_cols=325 Identities=18% Similarity=0.214 Sum_probs=248.5
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 142 ~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
+..|.. +.|.++|+||+.+-.+. |+-..| .++|+|++++|||+.||||+.||+|++||.
T Consensus 127 g~~l~tGsGD~TvR~WD~~TeTp~-------------------~t~KgH-~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 127 GSRLVTGSGDTTVRLWDLDTETPL-------------------FTCKGH-KNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CceEEecCCCceEEeeccCCCCcc-------------------eeecCC-ccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 456666 45999999999763321 222344 889999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecC-----C-CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeece
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-----G-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSY 294 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-----G-~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~ 294 (842)
.+|. +....|.||+.+|++|+|-|- . +|+|+|.||+|||||+..+.+.+.+.
T Consensus 187 ktg~-------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls--------------- 244 (480)
T KOG0271|consen 187 KTGQ-------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS--------------- 244 (480)
T ss_pred CCCC-------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec---------------
Confidence 9885 566789999999999999763 3 38999999999999996654444332
Q ss_pred eecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCC---Cccccc
Q 003171 295 IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP---DFAMED 370 (842)
Q Consensus 295 ~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~---~~~~~~ 370 (842)
+| +..|.|+..+ +.+.+++++ |+||++|++..|.+++.|.+|++++|.++++..- ...++.
T Consensus 245 ----gH----------T~~VTCvrwG-G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 245 ----GH----------TASVTCVRWG-GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred ----cC----------ccceEEEEEc-CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccc
Confidence 23 5568888876 456788887 7899999999999999999999999988776421 111111
Q ss_pred ceEEEEEecC-CCCccce--eeeEeecCcceEEecCCcEEEEee----c---CccccCCCceEEEEECCCCc-EEEEeCC
Q 003171 371 EFKTKIVTSS-KKDKAQS--SFGFFQRSRNAIMGAADAVRRVAA----K---GGFGDDNRRTEALTTSIDGM-IWTGGAN 439 (842)
Q Consensus 371 ~~~~~~~s~~-~~~~~~~--s~~~~~~~~~~~~g~~~~v~~v~~----~---g~~~~~~~~v~al~~s~dg~-l~Sgs~D 439 (842)
..+ +.-+.. .+.++.. ....-+.+.....|+.+...-+|. + ....+|...|..+.||||++ ++|+|-|
T Consensus 310 t~~-~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD 388 (480)
T KOG0271|consen 310 TGR-KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFD 388 (480)
T ss_pred ccc-cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecc
Confidence 100 000000 0000000 000111123456777777666664 1 23457889999999999998 8999999
Q ss_pred CeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEE
Q 003171 440 GLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFT 513 (842)
Q Consensus 440 gtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S 513 (842)
+.|||||. +|+.+.+|.||-.+|+.++. |.+.|+|||.|.|+++||+. .++...|.||.+.|.++. +||+.++|
T Consensus 389 kSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~s 468 (480)
T KOG0271|consen 389 KSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVAS 468 (480)
T ss_pred cceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeec
Confidence 99999999 89999999999999998864 77899999999999999998 467889999999999997 69999999
Q ss_pred EcCCCCeeecc
Q 003171 514 LANHGGIRGWN 524 (842)
Q Consensus 514 ~S~DgtIrvWd 524 (842)
|+.|+.+|+|.
T Consensus 469 ggkdkv~~lw~ 479 (480)
T KOG0271|consen 469 GGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEeec
Confidence 99999999995
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.9e-36 Score=311.53 Aligned_cols=320 Identities=17% Similarity=0.249 Sum_probs=221.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..+|.|++|+|+|..|+||+-|.|+|+||+.+. .+..+.+||...|.||+++|||+ |+||+.||+|++||.
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--------Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--------TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeeccCCC--------CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 789999999999999999999999999999997 57788999999999999999998 899999999999999
Q ss_pred CCcccee-ecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 270 EAIEKAL-SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 270 ~t~~~~l-~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
.+++... .+..+..++.++.-++- -..+..+++++++ |++++|||+..|.++.+
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~------------------------hl~p~~r~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPL------------------------HLVPPCRRLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred CCCCcccccccCcccceeEEeeccc------------------------ccCCCccceecccCCCCEEEEEccCceEEEE
Confidence 8765432 22333333333311110 0122334666665 78999999999999999
Q ss_pred eecCCceEeeeecccCC-CcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee-------cCccccCC
Q 003171 348 FNIDGQIENRVDMSLLP-DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-------KGGFGDDN 419 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-------~g~~~~~~ 419 (842)
+.+|...+..+..-... ..+...+-++++|.... ++- -+.+.||+..+..++. .|.|....
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~d-G~~----------~r~lkGHahwvN~lalsTdy~LRtgaf~~t~ 311 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALD-GKL----------CRELKGHAHWVNHLALSTDYVLRTGAFDHTG 311 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEEEEEccc-hhH----------HHhhcccchheeeeeccchhhhhcccccccc
Confidence 99987654332211100 00001111122222210 000 0123333333332221 12221100
Q ss_pred Cc--------------eEEEEECCCCcEEEEeCCCeEEEEcC-C-CCeeeeeecCCccEEEE--EecCCEEEEEecCcEE
Q 003171 420 RR--------------TEALTTSIDGMIWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIV 481 (842)
Q Consensus 420 ~~--------------v~al~~s~dg~l~Sgs~DgtIrlWD~-~-g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtI 481 (842)
.. -+++.-....+|+|||.|.++.+|+. . .+++..+.+|..-|+.+ +|||++||+||.|..|
T Consensus 312 ~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSV 391 (480)
T KOG0271|consen 312 RKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSV 391 (480)
T ss_pred ccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccce
Confidence 00 00011111135999999999999999 3 57899999999999976 5689999999999999
Q ss_pred EEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCCCcchhhhhhcccccccccccceeEEEEE
Q 003171 482 QVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGT 558 (842)
Q Consensus 482 rlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~t 558 (842)
||||.. |+++.+|+||-++|+.+++ |.+.|+|+|.|.|+|+|++++..-..++.. ..+ .||...
T Consensus 392 kLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG-----h~D--------EVf~vD 458 (480)
T KOG0271|consen 392 KLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG-----HAD--------EVFAVD 458 (480)
T ss_pred eeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC-----CCc--------eEEEEE
Confidence 999986 9999999999999999996 777999999999999999987654444321 222 289999
Q ss_pred EEeCCCCC
Q 003171 559 WNVGQGRA 566 (842)
Q Consensus 559 wNv~~~~~ 566 (842)
|...+.+.
T Consensus 459 wspDG~rV 466 (480)
T KOG0271|consen 459 WSPDGQRV 466 (480)
T ss_pred ecCCCcee
Confidence 99887765
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-33 Score=299.33 Aligned_cols=266 Identities=18% Similarity=0.201 Sum_probs=223.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--C-CEEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--G-DLWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G-~L~SgS~DgtIrvW 267 (842)
+.||..+.|+.+++.|+|||.+|.+++|+..+. ..+.+|.||++.|.++.|+|. + .|+|||.||++|+|
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCc--------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeee
Confidence 789999999999999999999999999999886 788999999999999999997 3 38999999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
++++..... ++.+| ...|..+++.++|..+.+++ |.+-+|||++|+..+.
T Consensus 247 ~~~~e~~l~-------------------~l~gH----------~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 247 KLSQETPLQ-------------------DLEGH----------LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred ccCCCcchh-------------------hhhcc----------hhhheeeeecCCCceeeecccccchhhcccccchhhH
Confidence 997633222 22233 22456688899999999988 5789999999998766
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCC
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNR 420 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~ 420 (842)
...+|...+ -++.|.+++..+.+|..|..-|+|. +| .|.+|.+
T Consensus 298 ~QEGHs~~v-------------------------------~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k 346 (459)
T KOG0272|consen 298 LQEGHSKGV-------------------------------FSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK 346 (459)
T ss_pred hhccccccc-------------------------------ceeEecCCCceeeccCccchhheeecccCcEEEEeccccc
Confidence 655654322 1345666666667777777777776 33 3567999
Q ss_pred ceEEEEECCCCc-EEEEeCCCeEEEEcCC-CCeeeeeecCCccEEEEEe---cCCEEEEEecCcEEEEEeCC-Ccccccc
Q 003171 421 RTEALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~~l 494 (842)
.|.+++|||+|+ |+|||.|+++|+||+. .+++.++.+|++-|..+.+ .|.+|++++.|++++||... +.+++++
T Consensus 347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL 426 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL 426 (459)
T ss_pred ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh
Confidence 999999999999 8999999999999995 5779999999999998865 47899999999999999987 7899999
Q ss_pred cccccCEEEEE--eCCCEEEEEcCCCCeeecc
Q 003171 495 VAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 495 ~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd 524 (842)
.||.+.|.++. .|++.++|+|.|.|+|+|.
T Consensus 427 aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999987 6899999999999999996
No 8
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9e-33 Score=284.74 Aligned_cols=268 Identities=22% Similarity=0.355 Sum_probs=207.7
Q ss_pred eEEEEecCCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 003171 135 LRTIVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (842)
Q Consensus 135 ~~~l~~~~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG 213 (842)
++++..+...+..| -|++|+|||..+.+.... -.+| +++|+|+.++. +.|+|||.|.
T Consensus 200 VYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GH-tGSVLCLqyd~--rviisGSSDs 257 (499)
T KOG0281|consen 200 VYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKI-------------------LTGH-TGSVLCLQYDE--RVIVSGSSDS 257 (499)
T ss_pred eEEEEecchhhhcccccCceEEeccccHHHHHh-------------------hhcC-CCcEEeeeccc--eEEEecCCCc
Confidence 33444445455554 499999999987554321 2244 89999999975 7999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
|||+||.++| +++.++.+|..+|..+.|+. |.++|+|.|.+|+|||+..... .++..
T Consensus 258 TvrvWDv~tg--------e~l~tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~-it~rr------------- 314 (499)
T KOG0281|consen 258 TVRVWDVNTG--------EPLNTLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTD-ITLRR------------- 314 (499)
T ss_pred eEEEEeccCC--------chhhHHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchH-HHHHH-------------
Confidence 9999999998 77888999999999999986 7899999999999999965321 11100
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEe-CCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccce
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
.+.|| -..|..+-++ ...+.++ +|.||++|++.|+++++++.+|..-
T Consensus 315 --VLvGH----------rAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRG------------------ 362 (499)
T KOG0281|consen 315 --VLVGH----------RAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG------------------ 362 (499)
T ss_pred --HHhhh----------hhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhccccc------------------
Confidence 12223 1234444443 2344554 4789999999999999888665311
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCC
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGN 450 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~ 450 (842)
+. ++. -.|+ ++|||.|.|||+||+ .|.
T Consensus 363 ---------------------------------IA----------------ClQ--Yr~rlvVSGSSDntIRlwdi~~G~ 391 (499)
T KOG0281|consen 363 ---------------------------------IA----------------CLQ--YRDRLVVSGSSDNTIRLWDIECGA 391 (499)
T ss_pred ---------------------------------ce----------------ehh--ccCeEEEecCCCceEEEEeccccH
Confidence 00 000 1234 789999999999999 799
Q ss_pred eeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-C---------cccccccccccCEEEEEeCCCEEEEEcCCCCe
Q 003171 451 RLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-G---------NLLGGWVAHSSPVIKMAVGAGYIFTLANHGGI 520 (842)
Q Consensus 451 ~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g---------~~i~~l~gH~~~V~sla~dg~~l~S~S~DgtI 520 (842)
|++.++||..-|.|+.+|.++|++|..||+|+|||+. + -|+.++..|++.|..+.+|.-.+++.+.|.+|
T Consensus 392 cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtI 471 (499)
T KOG0281|consen 392 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTI 471 (499)
T ss_pred HHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeE
Confidence 9999999999999999999999999999999999964 2 16888999999999999999999999999999
Q ss_pred eeccccCCCC
Q 003171 521 RGWNVTSPGP 530 (842)
Q Consensus 521 rvWd~~~~~~ 530 (842)
-+||+-...|
T Consensus 472 LiWdFl~~~~ 481 (499)
T KOG0281|consen 472 LIWDFLNGPP 481 (499)
T ss_pred EEEEcCCCCc
Confidence 9999866444
No 9
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.8e-30 Score=266.07 Aligned_cols=267 Identities=18% Similarity=0.208 Sum_probs=212.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..+|..+.+.|+--++++++.|++|++||..++ +....++||+++|.+|+|+..|+ |+|+|.|-.+++||.
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--------~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETG--------ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccch--------hhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 779999999999999999999999999999998 56788999999999999999998 789999999999999
Q ss_pred CCcccee-ecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 270 EAIEKAL-SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 270 ~t~~~~l-~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
++...++ .... | .-.+.++++-+.+..|.|++ |.+|+.|+..||.|+++
T Consensus 180 ~~~~~c~ks~~g-------------------h----------~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t 230 (406)
T KOG0295|consen 180 DTFFRCIKSLIG-------------------H----------EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT 230 (406)
T ss_pred HHHHHHHHHhcC-------------------c----------ccceeeEEEEecCCeeeecccccceeEEecccceeEEe
Confidence 7632221 1111 1 12344566666677888877 68999999999999999
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee------cCccccCCCc
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------KGGFGDDNRR 421 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------~g~~~~~~~~ 421 (842)
|.+|.+++..+....+ +.....+..+-..++|. +..+.+|...
T Consensus 231 ~~~h~ewvr~v~v~~D-------------------------------Gti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~ 279 (406)
T KOG0295|consen 231 FPGHSEWVRMVRVNQD-------------------------------GTIIASCSNDQTLRVWVVATKQCKAELREHEHP 279 (406)
T ss_pred ccCchHhEEEEEecCC-------------------------------eeEEEecCCCceEEEEEeccchhhhhhhccccc
Confidence 9999886543332221 11112223333344443 2345567777
Q ss_pred eEEEEECCC---------------Cc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEec--CCEEEEEecCcEEE
Q 003171 422 TEALTTSID---------------GM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQ 482 (842)
Q Consensus 422 v~al~~s~d---------------g~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~d--G~~LasGs~DgtIr 482 (842)
|+++++.|. ++ +.++|.|++||+||+ +|.|+-++.+|.++|..+++. |+||+|+..|++++
T Consensus 280 vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlr 359 (406)
T KOG0295|consen 280 VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLR 359 (406)
T ss_pred eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEE
Confidence 777776552 23 789999999999999 899999999999999998775 99999999999999
Q ss_pred EEeCC-CcccccccccccCEEEEEeC--CCEEEEEcCCCCeeeccc
Q 003171 483 VLDLE-GNLLGGWVAHSSPVIKMAVG--AGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 483 lWD~~-g~~i~~l~gH~~~V~sla~d--g~~l~S~S~DgtIrvWd~ 525 (842)
+||++ ++|..++.+|...|+++.++ .-+++|||-|.++++|..
T Consensus 360 vwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 360 VWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99997 78999999999999999964 348999999999999963
No 10
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.8e-31 Score=275.14 Aligned_cols=231 Identities=19% Similarity=0.273 Sum_probs=185.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (842)
...|+|+.+|. +.++||..|.||++||..+- .+...|.||++.|.|+.|..- -|+|||.|.||||||++
T Consensus 197 skgVYClQYDD--~kiVSGlrDnTikiWD~n~~--------~c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~ 265 (499)
T KOG0281|consen 197 SKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSL--------ECLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVN 265 (499)
T ss_pred CCceEEEEecc--hhhhcccccCceEEeccccH--------HHHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEecc
Confidence 44799999974 67899999999999999875 667789999999999998652 37899999999999999
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeec
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~ 350 (842)
+++...++..+ ...|..+.++ .+-.|.|+.|.+|++||+.+-.-+
T Consensus 266 tge~l~tlihH-----------------------------ceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~i----- 310 (499)
T KOG0281|consen 266 TGEPLNTLIHH-----------------------------CEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDI----- 310 (499)
T ss_pred CCchhhHHhhh-----------------------------cceeEEEEEe-CCEEEEecCCceeEEEeccCchHH-----
Confidence 98764433221 2234445554 355555566889999998542100
Q ss_pred CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC
Q 003171 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (842)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d 430 (842)
. -+.+ +.+|...|..+.|+ +
T Consensus 311 --------------------t-----------------------~rrV----------------LvGHrAaVNvVdfd-~ 330 (499)
T KOG0281|consen 311 --------------------T-----------------------LRRV----------------LVGHRAAVNVVDFD-D 330 (499)
T ss_pred --------------------H-----------------------HHHH----------------Hhhhhhheeeeccc-c
Confidence 0 0011 22333444444453 3
Q ss_pred CcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEeCC
Q 003171 431 GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGA 508 (842)
Q Consensus 431 g~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg 508 (842)
..++|+|.|.|||+|++ ++++++++.+|...|-|+...|+++++||+|.||||||.+ |.|++.+.||.+-|.+|.+|.
T Consensus 331 kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~ 410 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 410 (499)
T ss_pred ceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC
Confidence 36899999999999999 7999999999999999999999999999999999999998 999999999999999999999
Q ss_pred CEEEEEcCCCCeeeccccC
Q 003171 509 GYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 509 ~~l~S~S~DgtIrvWd~~~ 527 (842)
+.++||+.||+||+||+..
T Consensus 411 krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred ceeeeccccceEEEEeccc
Confidence 9999999999999999754
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=1.5e-28 Score=249.65 Aligned_cols=268 Identities=17% Similarity=0.226 Sum_probs=215.0
Q ss_pred EecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003171 139 VCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (842)
Q Consensus 139 ~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrl 217 (842)
+.+.+.+.. ++|+.+-|||.-+.... .+-| +. ..+|+.+||+|.|+.+|.|+-|...-|
T Consensus 64 s~Dsr~ivSaSqDGklIvWDs~TtnK~---------------haip----l~-s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 64 STDSRRIVSASQDGKLIVWDSFTTNKV---------------HAIP----LP-SSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred cCCcCeEEeeccCCeEEEEEcccccce---------------eEEe----cC-ceeEEEEEECCCCCeEEecCcCceeEE
Confidence 344555554 78999999998664321 1112 33 679999999999999999999999999
Q ss_pred EECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeec
Q 003171 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (842)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l 297 (842)
+++.+.. .+...+..+.+.||++.+.+..|.+|++|+|||.|.|.-+||+++++....+.
T Consensus 124 y~ls~~d--~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~------------------ 183 (343)
T KOG0286|consen 124 YPLSTRD--AEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFH------------------ 183 (343)
T ss_pred Eeccccc--ccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEec------------------
Confidence 9998641 11222345678999999999999999999999999999999999876544433
Q ss_pred ccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEE
Q 003171 298 RSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (842)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (842)
+| ..+|..|...+ ++..+.+++ |++.+|||++.+.+.++|.+|..
T Consensus 184 -GH----------~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes---------------------- 230 (343)
T KOG0286|consen 184 -GH----------TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES---------------------- 230 (343)
T ss_pred -CC----------cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc----------------------
Confidence 23 56788888877 666777777 78999999999999888766532
Q ss_pred EEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeee
Q 003171 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQ 453 (842)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~ 453 (842)
.|.+|.|-|+|. +++||.|++.|++|+ ..+.+.
T Consensus 231 ---------------------------------------------DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a 265 (343)
T KOG0286|consen 231 ---------------------------------------------DINSVRFFPSGDAFATGSDDATCRLYDLRADQELA 265 (343)
T ss_pred ---------------------------------------------ccceEEEccCCCeeeecCCCceeEEEeecCCcEEe
Confidence 234555667777 899999999999999 677888
Q ss_pred eeec--CCccEEEEEe--cCCEEEEEecCcEEEEEeC-CCcccccccccccCEEEEE--eCCCEEEEEcCCCCeeecc
Q 003171 454 DFQY--LPFAVQCLCT--FGSQIWVGYMNGIVQVLDL-EGNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 454 ~l~~--H~~~V~sls~--dG~~LasGs~DgtIrlWD~-~g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd 524 (842)
.|.. -..+|+++++ .|++|.+|+.|.++.+||. +++.+..|.||.+.|.+|. +||.-++|||+|.++|||.
T Consensus 266 ~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 266 VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 8763 2347888865 6999999999999999995 6889999999999999986 7999999999999999994
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=2.8e-29 Score=283.93 Aligned_cols=242 Identities=19% Similarity=0.341 Sum_probs=196.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------------c-----------CCCCCcceeEEecccCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL------------L-----------DSDDGFGEVLSWQAHRGPVLSL 247 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~------------~-----------~~~~~~~~~~~l~gH~~~V~sl 247 (842)
...|.|..|++|+.+||.|-.|-.|++|.+.... . .+...-....++.||++||.++
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 5579999999999999999999999999987411 0 1112223345689999999999
Q ss_pred EEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEE
Q 003171 248 CISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV 326 (842)
Q Consensus 248 afs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v 326 (842)
.|+|+.+ |+|+|+|++||+|.+.+..+.+.+. || ...|-.+.++|-|..+
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-------------------GH----------~~PVwdV~F~P~GyYF 508 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-------------------GH----------LAPVWDVQFAPRGYYF 508 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEec-------------------CC----------CcceeeEEecCCceEE
Confidence 9999998 7899999999999998765443332 23 2234455677778888
Q ss_pred EEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCc
Q 003171 327 WSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA 405 (842)
Q Consensus 327 ~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~ 405 (842)
++++ |+|.++|....-++++.
T Consensus 509 atas~D~tArLWs~d~~~PlRi---------------------------------------------------------- 530 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHNKPLRI---------------------------------------------------------- 530 (707)
T ss_pred EecCCCceeeeeecccCCchhh----------------------------------------------------------
Confidence 8877 57899998765443333
Q ss_pred EEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEE
Q 003171 406 VRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIV 481 (842)
Q Consensus 406 v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtI 481 (842)
|.+|...|.++.|.|+.. +++||.|.+||+||+ +|.+++.|.||..+|.+++ ++|++|++|+.||.|
T Consensus 531 ---------faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 531 ---------FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred ---------hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence 334455566778888876 899999999999999 8999999999999999885 689999999999999
Q ss_pred EEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCC
Q 003171 482 QVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 482 rlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
+|||+. |+++..+.+|++.|.+|.+ ||..|+++|.|++|++||+...
T Consensus 602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999997 7899999999999999985 8999999999999999998654
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=6.3e-29 Score=278.02 Aligned_cols=362 Identities=18% Similarity=0.185 Sum_probs=250.8
Q ss_pred eEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCC--CEEEEE
Q 003171 135 LRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS--GVVWSG 209 (842)
Q Consensus 135 ~~~l~~~~~-~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg--~~LaSG 209 (842)
+-.+++++. .|.+ |.|+.|+|||+...+... .|++ + .+.|.++.|.|+- .+|++|
T Consensus 108 vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th-----------------~fkG--~-gGvVssl~F~~~~~~~lL~sg 167 (775)
T KOG0319|consen 108 VITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH-----------------SFKG--H-GGVVSSLLFHPHWNRWLLASG 167 (775)
T ss_pred eEEEEEcCCCceEEeccccceEEEEEeeCCEEEE-----------------EecC--C-CceEEEEEeCCccchhheeec
Confidence 445666544 5555 679999999998755321 1322 2 7789999999865 469999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeE-
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA- 287 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~- 287 (842)
..|+++|+||+.... .+..++++|...|++++|++|+. ++|++.|+.|.|||+...++...+. ....+++
T Consensus 168 ~~D~~v~vwnl~~~~-------tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp-~ye~~E~v 239 (775)
T KOG0319|consen 168 ATDGTVRVWNLNDKR-------TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLP-LYESLESV 239 (775)
T ss_pred CCCceEEEEEcccCc-------hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheec-hhhheeeE
Confidence 999999999998752 46788999999999999999997 8999999999999985422111100 0000000
Q ss_pred -----------------------------------------------------------EEEeecee--ecc--------
Q 003171 288 -----------------------------------------------------------LIVERSYI--DLR-------- 298 (842)
Q Consensus 288 -----------------------------------------------------------l~~~~s~~--~l~-------- 298 (842)
+..+..++ +.+
T Consensus 240 v~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i 319 (775)
T KOG0319|consen 240 VRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI 319 (775)
T ss_pred EEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhh
Confidence 00000000 000
Q ss_pred -c-ceeccce----------------------------eee---ecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCc-
Q 003171 299 -S-HLSVNGF----------------------------SSI---LTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE- 343 (842)
Q Consensus 299 -~-~~~~~~~----------------------------~~~---~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~- 343 (842)
| +..+..+ |++ ++.-+.+|.....|..+++++ |+++++|-+..+.
T Consensus 320 vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~ 399 (775)
T KOG0319|consen 320 VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS 399 (775)
T ss_pred cCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc
Confidence 0 0000000 110 122244555445566788877 7899999764332
Q ss_pred ---EEEEeecCCceEeeeecccCC-----CcccccceEEEEEecC----------------CCCccceeeeEeecCcceE
Q 003171 344 ---LLKVFNIDGQIENRVDMSLLP-----DFAMEDEFKTKIVTSS----------------KKDKAQSSFGFFQRSRNAI 399 (842)
Q Consensus 344 ---~l~~l~~~~~~~~~~~~s~~~-----~~~~~~~~~~~~~s~~----------------~~~~~~~s~~~~~~~~~~~ 399 (842)
++....+|...+..+.++... ..+-|..+|+|....+ ..+|.++++...++.....
T Consensus 400 ~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA 479 (775)
T KOG0319|consen 400 KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA 479 (775)
T ss_pred hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEE
Confidence 233334554433333332211 1112333443332221 1355566788888888888
Q ss_pred EecCCcEEEEee------cCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cC
Q 003171 400 MGAADAVRRVAA------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FG 469 (842)
Q Consensus 400 ~g~~~~v~~v~~------~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG 469 (842)
+|+.|-...+|. .|++.+|.+.|.++.|++..+ ++|+|.|+|||+|.+ +..|+++|.||+++|.-.++ +|
T Consensus 480 T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~ 559 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG 559 (775)
T ss_pred ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC
Confidence 899988777775 467889999999999999887 799999999999999 89999999999999997665 79
Q ss_pred CEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeecc
Q 003171 470 SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 470 ~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd 524 (842)
++|+|+++||-|+||+.+ +.|+.++.+|++.||+++ +....++||+.|+.|-+|.
T Consensus 560 ~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 560 KQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred cEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999998 679999999999999998 4566889999999999996
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=5.5e-28 Score=244.52 Aligned_cols=261 Identities=20% Similarity=0.262 Sum_probs=194.9
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~ 227 (842)
+.|.++-+|++..-... .| .....|++ | .--|..+++++||++..|||.|+++|+||+.++
T Consensus 35 srDk~ii~W~L~~dd~~-----------~G-~~~r~~~G--H-sH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g---- 95 (315)
T KOG0279|consen 35 SRDKTIIVWKLTSDDIK-----------YG-VPVRRLTG--H-SHFVSDVVLSSDGNFALSASWDGTLRLWDLATG---- 95 (315)
T ss_pred ccceEEEEEEeccCccc-----------cC-ceeeeeec--c-ceEecceEEccCCceEEeccccceEEEEEecCC----
Confidence 56999999999532110 00 00111222 2 447889999999999999999999999999998
Q ss_pred CCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccce
Q 003171 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (842)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~ 306 (842)
+..+.|.||+.-|.+++|++|.+ ++|||.|+||++|++-+. +.++...+.
T Consensus 96 ----~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~------------------------ 146 (315)
T KOG0279|consen 96 ----ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDS------------------------ 146 (315)
T ss_pred ----cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCC------------------------
Confidence 77889999999999999999986 899999999999998542 222221110
Q ss_pred eeeecCCEEEEEEcCC--CCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCC
Q 003171 307 SSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (842)
Q Consensus 307 ~~~~s~~v~~las~~~--~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~ 383 (842)
...-|.|+.+.|. ...|.+++ |+++|+||+++.++...
T Consensus 147 ---~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~------------------------------------ 187 (315)
T KOG0279|consen 147 ---HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT------------------------------------ 187 (315)
T ss_pred ---CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc------------------------------------
Confidence 0234677888776 56788887 68999999987654322
Q ss_pred ccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCcc
Q 003171 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFA 461 (842)
Q Consensus 384 ~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~ 461 (842)
+.+|.+.+.++++||||. +++|+.||.+.|||+ +++++..+ .|...
T Consensus 188 -------------------------------~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~ 235 (315)
T KOG0279|consen 188 -------------------------------FIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDI 235 (315)
T ss_pred -------------------------------cccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCe
Confidence 334566678899999998 689999999999999 79998887 57889
Q ss_pred EEEEEecCC-EEEEEecCcEEEEEeCCC-ccccccc----cc---ccCEEE--EEe--CCCEEEEEcCCCCeeeccccC
Q 003171 462 VQCLCTFGS-QIWVGYMNGIVQVLDLEG-NLLGGWV----AH---SSPVIK--MAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 462 V~sls~dG~-~LasGs~DgtIrlWD~~g-~~i~~l~----gH---~~~V~s--la~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
|+++++..+ +...+..+..|+|||++. .++..++ +. .+.+.| +++ ||+.|++|-+|+.||+|.+..
T Consensus 236 v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 999999766 434445577899999984 4444443 22 123444 454 799999999999999998753
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=7.4e-28 Score=239.75 Aligned_cols=257 Identities=16% Similarity=0.230 Sum_probs=198.6
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~ 226 (842)
|.|.+||+|...++.+.+. +.+ .+-|..|.+.|+++.||.|+. ..||++|+.++.
T Consensus 17 ~YDhTIRfWqa~tG~C~rT---------------------iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n-- 72 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRT---------------------IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN-- 72 (311)
T ss_pred cCcceeeeeehhcCeEEEE---------------------EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC--
Confidence 6799999999988654321 112 567999999999999999887 479999999863
Q ss_pred CCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccc
Q 003171 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (842)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~ 305 (842)
+ ..+.++.+|++.|++|.|..||+ ++|||+||++||||+....+.-.+.
T Consensus 73 ---p-~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-------------------------- 122 (311)
T KOG0315|consen 73 ---P-NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-------------------------- 122 (311)
T ss_pred ---C-CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc--------------------------
Confidence 1 47889999999999999999999 7999999999999996632211110
Q ss_pred eeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCc
Q 003171 306 FSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDK 384 (842)
Q Consensus 306 ~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~ 384 (842)
....|..+...+....+.++. ++.|++||+.+..+...+-++
T Consensus 123 ----~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe--------------------------------- 165 (311)
T KOG0315|consen 123 ----HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE--------------------------------- 165 (311)
T ss_pred ----CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC---------------------------------
Confidence 123466677767666666665 578999999876553322111
Q ss_pred cceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CC------Ceeeeee
Q 003171 385 AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG------NRLQDFQ 456 (842)
Q Consensus 385 ~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g------~~l~~l~ 456 (842)
..-.|.++.+.|||. ++.+..-|+..+|++ ++ +.+..|+
T Consensus 166 ---------------------------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ 212 (311)
T KOG0315|consen 166 ---------------------------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ 212 (311)
T ss_pred ---------------------------------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee
Confidence 112345677788998 455556789999998 43 3566788
Q ss_pred cCCccEEE--EEecCCEEEEEecCcEEEEEeCCC--cccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCC
Q 003171 457 YLPFAVQC--LCTFGSQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 457 ~H~~~V~s--ls~dG~~LasGs~DgtIrlWD~~g--~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
.|...++. ++||+++||++|+|.+++||+.++ ++-.++++|+.+||.-++ ||+||+|||.|+++|+|++...
T Consensus 213 ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 213 AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence 89988885 378999999999999999999986 456788999999998764 8999999999999999998764
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.3e-28 Score=258.85 Aligned_cols=256 Identities=14% Similarity=0.158 Sum_probs=209.4
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC--CCEEEEEeCCCcEEEE
Q 003171 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWSGHRDGRIMCW 218 (842)
Q Consensus 142 ~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd--g~~LaSGs~DGtIrlW 218 (842)
++.|.. +-+|.++||+..+.... ..|+ .| ++.|.++.|.|. +..||||+.||++|+|
T Consensus 187 s~~laT~swsG~~kvW~~~~~~~~-----------------~~l~--gH-~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQCNLL-----------------QTLR--GH-TSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred CCeEEEeecCCceeEeecCCccee-----------------EEEe--cc-ccceeeEEEccCCCccceeeeccCCceeee
Confidence 335555 44999999998765221 1233 23 789999999997 5699999999999999
Q ss_pred ECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeec
Q 003171 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (842)
Q Consensus 219 dl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l 297 (842)
++++. .++..+.||...|..|+|.|+|+ |.|+|.|.|-|+||+.++...+- .
T Consensus 247 ~~~~e--------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~-------------------Q 299 (459)
T KOG0272|consen 247 KLSQE--------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL-------------------Q 299 (459)
T ss_pred ccCCC--------cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh-------------------h
Confidence 99986 67888999999999999999999 78999999999999988543321 1
Q ss_pred ccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEE
Q 003171 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (842)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (842)
+|| +..|..+++.++|..+.+|+ |..-+|||++||.++-.|.+|...+.
T Consensus 300 EGH----------s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~-------------------- 349 (459)
T KOG0272|consen 300 EGH----------SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEIL-------------------- 349 (459)
T ss_pred ccc----------ccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccccee--------------------
Confidence 223 44677888988999999988 56788999999999999987754322
Q ss_pred EecCCCCccceeeeEeecCcceEEecCCcEEEEee-c-----CccccCCCceEEEEECC-CCc-EEEEeCCCeEEEEcC-
Q 003171 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-K-----GGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP- 447 (842)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~-----g~~~~~~~~v~al~~s~-dg~-l~Sgs~DgtIrlWD~- 447 (842)
++.|.|++.+.++|+.|...++|. . -+...|..-|..|.|+| .|+ |+|+|.|+++++|..
T Consensus 350 -----------~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 350 -----------SVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred -----------eEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 356777777888888888888886 1 23456888899999998 566 899999999999999
Q ss_pred CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEe
Q 003171 448 NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 448 ~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD 485 (842)
+..+++.+.||.+.|.|+ ++||..|++++.|+||++|.
T Consensus 419 ~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 419 TWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 789999999999999987 57899999999999999996
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.8e-27 Score=266.31 Aligned_cols=372 Identities=19% Similarity=0.245 Sum_probs=243.2
Q ss_pred EEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003171 138 IVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIM 216 (842)
Q Consensus 138 l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIr 216 (842)
|.+++..|+. +...-+|+|.+.++..... . ...| .+||.-++|+|.|.+|++|+.||.++
T Consensus 70 l~~d~~~L~~a~rs~llrv~~L~tgk~irs-----------------w-Ka~H-e~Pvi~ma~~~~g~LlAtggaD~~v~ 130 (775)
T KOG0319|consen 70 LTPDEEVLVTASRSQLLRVWSLPTGKLIRS-----------------W-KAIH-EAPVITMAFDPTGTLLATGGADGRVK 130 (775)
T ss_pred ecCCccEEEEeeccceEEEEEcccchHhHh-----------------H-hhcc-CCCeEEEEEcCCCceEEeccccceEE
Confidence 3445555655 5567999999988754321 1 1124 88999999999999999999999999
Q ss_pred EEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC---EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 217 lWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~---L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
+||+..+ .+.+.|+||.+.|.++.|.|+-. |++|..|+++|+||+.+...++ .
T Consensus 131 VWdi~~~--------~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl--~-------------- 186 (775)
T KOG0319|consen 131 VWDIKNG--------YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCL--H-------------- 186 (775)
T ss_pred EEEeeCC--------EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHH--H--------------
Confidence 9999997 78999999999999999999864 6899999999999997543211 0
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeeccc----------
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSL---------- 362 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~---------- 362 (842)
.++.| .+.++.+++..++..+.+++ |+.+.|||+.+.+.++++....+++..+-+..
T Consensus 187 --~~~~H----------~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~ 254 (775)
T KOG0319|consen 187 --TMILH----------KSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYII 254 (775)
T ss_pred --HHHhh----------hhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEE
Confidence 01112 45677788777666666555 77889999987777666532211111000000
Q ss_pred --------------------------C-------------------CCc---ccc-cce---------------------
Q 003171 363 --------------------------L-------------------PDF---AME-DEF--------------------- 372 (842)
Q Consensus 363 --------------------------~-------------------~~~---~~~-~~~--------------------- 372 (842)
. +++ .++ ++.
T Consensus 255 TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~ 334 (775)
T KOG0319|consen 255 TAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGP 334 (775)
T ss_pred EecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCC
Confidence 0 000 000 000
Q ss_pred ---EEEEEecCCCCcc-----------------ceeeeEeecCcceEEecCCcEEEEee----------cCccccCCCce
Q 003171 373 ---KTKIVTSSKKDKA-----------------QSSFGFFQRSRNAIMGAADAVRRVAA----------KGGFGDDNRRT 422 (842)
Q Consensus 373 ---~~~~~s~~~~~~~-----------------~~s~~~~~~~~~~~~g~~~~v~~v~~----------~g~~~~~~~~v 422 (842)
.+.+.+++..-+. +-++..+..+...++++.|...++|. .+...+|...|
T Consensus 335 e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~sv 414 (775)
T KOG0319|consen 335 EESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSV 414 (775)
T ss_pred ccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccccc
Confidence 0111111100000 00111122222333444444333331 12334688899
Q ss_pred EEEEECCCCc--EEEEeCCCeEEEEcCCC----------CeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-
Q 003171 423 EALTTSIDGM--IWTGGANGLLLQWDPNG----------NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE- 487 (842)
Q Consensus 423 ~al~~s~dg~--l~Sgs~DgtIrlWD~~g----------~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~- 487 (842)
.+++++..+- ++++|.|++|++|++.+ ++..+...|...|+|++ +..+.||+||.|++.+||+++
T Consensus 415 gava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~ 494 (775)
T KOG0319|consen 415 GAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ 494 (775)
T ss_pred ceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC
Confidence 9999987765 79999999999999833 12223346999999985 567899999999999999998
Q ss_pred CcccccccccccCEEEEEeC--CCEEEEEcCCCCeeeccccCCCCCcchhhhhhcccccccccccce------eEEEEEE
Q 003171 488 GNLLGGWVAHSSPVIKMAVG--AGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENL------KILAGTW 559 (842)
Q Consensus 488 g~~i~~l~gH~~~V~sla~d--g~~l~S~S~DgtIrvWd~~~~~~~d~~l~~~l~~r~~~y~~~~~~------~i~~~tw 559 (842)
..+..+|.||.-.|++|.+. .+.++|+|.|+|||||.+.++.++..+-.+...--...|...++. .=.+=-|
T Consensus 495 ~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlW 574 (775)
T KOG0319|consen 495 LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLW 574 (775)
T ss_pred ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEE
Confidence 67899999999999999975 458999999999999999988876554422222222222222221 1234569
Q ss_pred EeCCC
Q 003171 560 NVGQG 564 (842)
Q Consensus 560 Nv~~~ 564 (842)
|+..+
T Consensus 575 nikt~ 579 (775)
T KOG0319|consen 575 NIKTN 579 (775)
T ss_pred eccch
Confidence 99755
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=6.1e-27 Score=265.04 Aligned_cols=240 Identities=19% Similarity=0.317 Sum_probs=188.9
Q ss_pred EEEE-e-cCCCEEEEeCCCCc--cccc--------cccccccCCCCCCCCCCeeeeeec-CCCeEEEEEcCCCCEEEEEe
Q 003171 144 QLWA-G-GENGLRVWNLKELY--DESE--------SDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 144 ~l~~-~-~D~~vrvWdl~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g-~~~V~~la~dpdg~~LaSGs 210 (842)
.+.| | .|..|++|.+.... .... +-+....-+..|+....-...+-| .+||+.+.|+|+.++|.|+|
T Consensus 391 smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScS 470 (707)
T KOG0263|consen 391 SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCS 470 (707)
T ss_pred chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeecc
Confidence 5555 4 38899999996311 1100 000011123344444443332323 89999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.|+++|+|.+.+- .+....+||..||+.|.|+|.|. ++|||.|+|.|+|..+..... +.
T Consensus 471 ED~svRLWsl~t~--------s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl-Ri----------- 530 (707)
T KOG0263|consen 471 EDSSVRLWSLDTW--------SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL-RI----------- 530 (707)
T ss_pred CCcceeeeecccc--------eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch-hh-----------
Confidence 9999999999996 56778899999999999999997 899999999999998652211 11
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
+.+| -+++.|+.+.|+...+++|+ |+|+++||+.+|..++.|.
T Consensus 531 -------fagh----------lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~------------------- 574 (707)
T KOG0263|consen 531 -------FAGH----------LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT------------------- 574 (707)
T ss_pred -------hccc----------ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-------------------
Confidence 1122 56899999999999999988 6799999999988766554
Q ss_pred ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC
Q 003171 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP 447 (842)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~ 447 (842)
+|...|.+|+|||+|+ |+||+.||.|++||+
T Consensus 575 ------------------------------------------------GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 575 ------------------------------------------------GHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred ------------------------------------------------CCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 3445677899999998 899999999999999
Q ss_pred -CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 448 -NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 448 -~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
.|+.+.++.+|++.|.++++ ||..||+|+.|.+|+|||+.
T Consensus 607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 78999999999999999864 89999999999999999975
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.7e-26 Score=233.73 Aligned_cols=245 Identities=18% Similarity=0.210 Sum_probs=196.8
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCE-EEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd 268 (842)
.+.|..++..+. -++|.++|.|.++.+|++.... -+.-...+.+.||+..|..++.++||.. +|+|+|+++|+||
T Consensus 15 ~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd---~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD 91 (315)
T KOG0279|consen 15 TDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD---IKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD 91 (315)
T ss_pred CceEEEEEeecCCCceEEEcccceEEEEEEeccCc---cccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence 789999998876 5899999999999999987641 1122446778999999999999999994 6999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
+++++....+ .+| ..+|.++++++++.++.+++ |+||++|+...+.. -+
T Consensus 92 l~~g~~t~~f-------------------~GH----------~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t 141 (315)
T KOG0279|consen 92 LATGESTRRF-------------------VGH----------TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YT 141 (315)
T ss_pred ecCCcEEEEE-------------------Eec----------CCceEEEEecCCCceeecCCCcceeeeeeecccEE-EE
Confidence 9886543322 223 56899999999999999998 78999999864322 11
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
...+ .+...|.++.|
T Consensus 142 ~~~~-----------------------------------------------------------------~~~~WVscvrf 156 (315)
T KOG0279|consen 142 IHED-----------------------------------------------------------------SHREWVSCVRF 156 (315)
T ss_pred EecC-----------------------------------------------------------------CCcCcEEEEEE
Confidence 1100 11345677888
Q ss_pred CCCC---cEEEEeCCCeEEEEcCC-CCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-CcccccccccccC
Q 003171 428 SIDG---MIWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (842)
Q Consensus 428 s~dg---~l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (842)
+|+. .|+++|.|++||+||+. -+..+++.||+..|+.+ ++||...++|+.||.+.|||++ ++.+.++ .|...
T Consensus 157 sP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~ 235 (315)
T KOG0279|consen 157 SPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDI 235 (315)
T ss_pred cCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCe
Confidence 8863 48999999999999995 57788899999999976 5799999999999999999997 8888877 57889
Q ss_pred EEEEEeCCC-EEEEEcCCCCeeeccccCCCCCcch
Q 003171 501 VIKMAVGAG-YIFTLANHGGIRGWNVTSPGPLDSI 534 (842)
Q Consensus 501 V~sla~dg~-~l~S~S~DgtIrvWd~~~~~~~d~~ 534 (842)
|.++++.++ +-+.++++.+|||||+.+...++.+
T Consensus 236 v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATATSIKIWDLESKAVVEEL 270 (315)
T ss_pred EeeEEecCCceeEeeccCCceEEEeccchhhhhhc
Confidence 999998766 4557888999999999887666654
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=5.4e-27 Score=243.39 Aligned_cols=233 Identities=19% Similarity=0.281 Sum_probs=191.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
-++|.|++++|.+++++||+.|++|+|||+++| +...++.||-..|..|++|+--- |+|+++|+.||-||+
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg--------~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATG--------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccC--------eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 789999999999999999999999999999998 78889999999999999998654 899999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
+..+-.-.+++ | -+.|.+|...+.-..|++++ |.++++||++|+..+.+|
T Consensus 223 e~nkvIR~YhG-------------------H----------lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l 273 (460)
T KOG0285|consen 223 EYNKVIRHYHG-------------------H----------LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL 273 (460)
T ss_pred hhhhhHHHhcc-------------------c----------cceeEEEeccccceeEEecCCcceEEEeeecccceEEEe
Confidence 76432211111 1 22467777777777777766 679999999998877777
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE-
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT- 427 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~- 427 (842)
.+|... |..+.+
T Consensus 274 ~GH~~~-------------------------------------------------------------------V~~V~~~ 286 (460)
T KOG0285|consen 274 SGHTNP-------------------------------------------------------------------VASVMCQ 286 (460)
T ss_pred cCCCCc-------------------------------------------------------------------ceeEEee
Confidence 655321 222222
Q ss_pred CCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecC--CEEEEEecCcEEEEEeCC-CcccccccccccCEEE
Q 003171 428 SIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (842)
Q Consensus 428 s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s 503 (842)
+-|+++++||.|++||+||+ .|+-..++..|...|.+++... ..+||++.| .|+-|++. |..++.+.+|++.|++
T Consensus 287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iint 365 (460)
T KOG0285|consen 287 PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINT 365 (460)
T ss_pred cCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeee
Confidence 24788999999999999999 8999999999999999997654 477787776 69999985 8999999999999999
Q ss_pred EEe-CCCEEEEEcCCCCeeeccccCC
Q 003171 504 MAV-GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 504 la~-dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
++. +...+++|+..|++..||.++.
T Consensus 366 l~~nsD~v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 366 LSVNSDGVLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred eeeccCceEEEcCCceEEEEEecCcC
Confidence 995 5668999999999999998763
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.9e-26 Score=247.01 Aligned_cols=296 Identities=18% Similarity=0.277 Sum_probs=209.8
Q ss_pred CCEEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec---CCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003171 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG---VSSVMCMVGDEASGVVWSGHRDGRIM 216 (842)
Q Consensus 142 ~~~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~V~~la~dpdg~~LaSGs~DGtIr 216 (842)
.+.+++ +.|.+.|+|++..-.. .+++ -+ +-..++++.++. ..-|+||+++.+|..||+|+.||.+|
T Consensus 190 ~~~llasg~~~s~ari~~l~e~~~-~~~~--q~------~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~r 260 (524)
T KOG0273|consen 190 RDGLLASGSGDSTARIWNLLENSN-IGST--QL------VLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEAR 260 (524)
T ss_pred hhhhhhccCCccceeeeeehhhcc-ccch--hh------hhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEE
Confidence 344666 3578999999964111 1100 00 001122221110 35799999999999999999999999
Q ss_pred EEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeecee
Q 003171 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (842)
Q Consensus 217 lWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~ 295 (842)
+|+..+ ..+.+|--|++||.+|.++..|. |+|++-|+|+-+||..+++....+..++
T Consensus 261 iw~~~G---------~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s------------- 318 (524)
T KOG0273|consen 261 IWNKDG---------NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS------------- 318 (524)
T ss_pred EEecCc---------hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeecc-------------
Confidence 999987 46788899999999999999997 8999999999999996643221111000
Q ss_pred ecccceeccceeeeecCCEEEEEEcCCCCEEEE-eCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEE
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s-~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (842)
.+.-+|... +...+++ ..++.|+++.+.-..++
T Consensus 319 -------------~~~lDVdW~----~~~~F~ts~td~~i~V~kv~~~~P~----------------------------- 352 (524)
T KOG0273|consen 319 -------------APALDVDWQ----SNDEFATSSTDGCIHVCKVGEDRPV----------------------------- 352 (524)
T ss_pred -------------CCccceEEe----cCceEeecCCCceEEEEEecCCCcc-----------------------------
Confidence 000112221 1112222 22344444433221111
Q ss_pred EEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCee
Q 003171 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRL 452 (842)
Q Consensus 375 ~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l 452 (842)
++|.+|.+.|.++.+.|-|. |+|+|.|+|+|||.. .+.+.
T Consensus 353 --------------------------------------~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 353 --------------------------------------KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred --------------------------------------eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 23556778888999999888 689999999999998 78899
Q ss_pred eeeecCCccEEEEE--e---------cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCC
Q 003171 453 QDFQYLPFAVQCLC--T---------FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHG 518 (842)
Q Consensus 453 ~~l~~H~~~V~sls--~---------dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~Dg 518 (842)
..|.+|+..|..+. | .+..|++++.|++|++||+. |.++.+|..|+.+|++|++ +|++++||+.||
T Consensus 395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG 474 (524)
T ss_pred hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCC
Confidence 99999999988873 3 24589999999999999997 8999999999999999985 799999999999
Q ss_pred CeeeccccCCCCCcchhhhhhcccccccccccceeEEEEEEEeCCCCC
Q 003171 519 GIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRA 566 (842)
Q Consensus 519 tIrvWd~~~~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~ 566 (842)
.|.+|+.+++.-... |..... ||..-||.++.+.
T Consensus 475 ~V~iws~~~~~l~~s------------~~~~~~--Ifel~Wn~~G~kl 508 (524)
T KOG0273|consen 475 CVHIWSTKTGKLVKS------------YQGTGG--IFELCWNAAGDKL 508 (524)
T ss_pred eeEeccccchheeEe------------ecCCCe--EEEEEEcCCCCEE
Confidence 999999766432222 222222 8999999998654
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=5.4e-26 Score=261.86 Aligned_cols=265 Identities=23% Similarity=0.334 Sum_probs=209.2
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 142 ~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
++.+.+ +.|+.+++|+...... .. ...+ ..| ...|.+++|+|+++.|++|+.|++||+||+
T Consensus 171 g~~l~~~~~~~~i~~~~~~~~~~-~~-------------~~~l---~~h-~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 171 GRALAAASSDGLIRIWKLEGIKS-NL-------------LREL---SGH-TRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred CCeEEEccCCCcEEEeecccccc-hh-------------hccc---ccc-ccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 445444 4799999999854331 00 0001 123 778999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeeccc
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~ 299 (842)
.... ..+++++||...|++++|+|+|+ ++|||.|++|||||+.+++....+. +
T Consensus 233 ~~~~-------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-------------------~ 286 (456)
T KOG0266|consen 233 KDDG-------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-------------------G 286 (456)
T ss_pred cCCC-------eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-------------------c
Confidence 4321 67889999999999999999997 6899999999999998754332222 2
Q ss_pred ceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE--EEEeecCCceEeeeecccCCCcccccceEEEE
Q 003171 300 HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL--LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (842)
Q Consensus 300 ~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~--l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (842)
| +..+..+++..++..+++++ |+.|++||+.+++. ++.+..+.
T Consensus 287 h----------s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~------------------------ 332 (456)
T KOG0266|consen 287 H----------SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE------------------------ 332 (456)
T ss_pred c----------CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC------------------------
Confidence 2 55688899999999999988 57899999999984 33322110
Q ss_pred EecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeee
Q 003171 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQD 454 (842)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~ 454 (842)
... .+..+.|+|++. +++++.|+++++||+ .+.++++
T Consensus 333 ----------------------------------------~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 333 ----------------------------------------NSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred ----------------------------------------CCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 011 355678999988 899999999999999 6899999
Q ss_pred eecCCccEEEE-----EecCCEEEEEecCcEEEEEeCC-Cccccccccc-ccCEEEEE--eCCCEEEEEc--CCCCeeec
Q 003171 455 FQYLPFAVQCL-----CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-SSPVIKMA--VGAGYIFTLA--NHGGIRGW 523 (842)
Q Consensus 455 l~~H~~~V~sl-----s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH-~~~V~sla--~dg~~l~S~S--~DgtIrvW 523 (842)
+.+|.+.++|+ ...|+++++|+.|+.|++||.. +..+..+.+| ...|..++ +...++++++ .|+.|++|
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence 99999987665 2368899999999999999998 6788999999 88888877 4677888888 79999999
Q ss_pred cc
Q 003171 524 NV 525 (842)
Q Consensus 524 d~ 525 (842)
..
T Consensus 452 ~~ 453 (456)
T KOG0266|consen 452 KY 453 (456)
T ss_pred cC
Confidence 74
No 23
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=3e-26 Score=264.56 Aligned_cols=268 Identities=21% Similarity=0.282 Sum_probs=216.8
Q ss_pred CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 142 EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 142 ~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
.+.+..+ .|.+|++||..+.+...+ ++ .+| .+.|.++++...+..|+|||.|.++|+||.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~----------------~l--~GH-~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILT----------------RL--VGH-FGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEe----------------ec--cCC-CCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 4455554 478999999987664321 11 133 889999999877899999999999999999
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccc
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~ 300 (842)
.+| ++..++.||.+.|.+|...+ ..+++||.|.+||||+++++.....+ ++|
T Consensus 279 ~sg--------~C~~~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~-------------------~~h 330 (537)
T KOG0274|consen 279 STG--------ECTHSLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLL-------------------RGH 330 (537)
T ss_pred CCC--------cEEEEecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEe-------------------ccc
Confidence 998 78999999999999998765 34789999999999999865432111 112
Q ss_pred eeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEec
Q 003171 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (842)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~ 379 (842)
...|+++..+ +..+.+++ |++|++||+.+++|+++|.+|..
T Consensus 331 ----------~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-------------------------- 372 (537)
T KOG0274|consen 331 ----------TGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-------------------------- 372 (537)
T ss_pred ----------cccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcc--------------------------
Confidence 4567777775 56677776 67899999999999888765532
Q ss_pred CCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CC-Ceeeeeec
Q 003171 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NG-NRLQDFQY 457 (842)
Q Consensus 380 ~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g-~~l~~l~~ 457 (842)
+|.++.+.....+++|+.|++|++||+ +. +|+.++.+
T Consensus 373 -----------------------------------------~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 373 -----------------------------------------RVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred -----------------------------------------eEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcC
Confidence 334444444456899999999999999 56 79999999
Q ss_pred CCccEEEEEecCCEEEEEecCcEEEEEeCC-Ccccccccc-cccCEEEEEeCCCEEEEEcCCCCeeeccccCCCCCcchh
Q 003171 458 LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA-HSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSIL 535 (842)
Q Consensus 458 H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g-H~~~V~sla~dg~~l~S~S~DgtIrvWd~~~~~~~d~~l 535 (842)
|..-|.++...+++|.+++.|++|++||.+ +++++++.+ |.+.|.++......+++++.|+++++||+.+..+...++
T Consensus 412 h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 412 HTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred CcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhhh
Confidence 999999999999999999999999999987 889999999 789999998877789999999999999998877766553
No 24
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.1e-26 Score=241.21 Aligned_cols=284 Identities=18% Similarity=0.294 Sum_probs=208.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEe-cCCC---EEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCIS-SYGD---LWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs-~dG~---L~SgS~DgtIrv 266 (842)
..+|.++... ++.|.||++||++|+||..+ +.+.+..||+++|.++++- ++.. ++|+|.|.|+++
T Consensus 105 dDWVSsv~~~--~~~IltgsYDg~~riWd~~G---------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L 173 (423)
T KOG0313|consen 105 DDWVSSVKGA--SKWILTGSYDGTSRIWDLKG---------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL 173 (423)
T ss_pred hhhhhhhccc--CceEEEeecCCeeEEEecCC---------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence 7788888776 69999999999999999987 6788999999999988763 4433 899999999999
Q ss_pred EeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEE
Q 003171 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELL 345 (842)
Q Consensus 267 Wd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l 345 (842)
|.++.++..+..... -+|| ...|.++.+.+++.++.++++ .+|+||+..+...
T Consensus 174 w~~~~~~~~~~~~~~---------------~~GH----------k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~- 227 (423)
T KOG0313|consen 174 WKWNVGENKVKALKV---------------CRGH----------KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE- 227 (423)
T ss_pred EEecCchhhhhHHhH---------------hccc----------ccceeEEEecCCCCeEEeecccceeeecccCCCcc-
Confidence 999764432221100 0122 345777888888999999995 6899999433211
Q ss_pred EEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEE
Q 003171 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (842)
Q Consensus 346 ~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al 425 (842)
..+... .. ..+ ...++++. .+....+ -.+.+|...|.++
T Consensus 228 ~~~E~~----------s~-------~rr----k~~~~~~~--------------~~~r~P~------vtl~GHt~~Vs~V 266 (423)
T KOG0313|consen 228 DELESS----------SN-------RRR----KKQKREKE--------------GGTRTPL------VTLEGHTEPVSSV 266 (423)
T ss_pred cccccc----------ch-------hhh----hhhhhhhc--------------ccccCce------EEecccccceeeE
Confidence 111100 00 000 00000000 0111111 1366899999999
Q ss_pred EECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC---Cc-ccccccccc
Q 003171 426 TTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE---GN-LLGGWVAHS 498 (842)
Q Consensus 426 ~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~---g~-~i~~l~gH~ 498 (842)
.+++.+.++|+|.|+|||.||+ .|.+..++.+ ....+|++. ..++|++|+.|..|||||.+ |. ..++|.||.
T Consensus 267 ~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~ 345 (423)
T KOG0313|consen 267 VWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK 345 (423)
T ss_pred EEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecch
Confidence 9999888999999999999999 7888888776 567888865 45699999999999999986 33 467899999
Q ss_pred cCEEEEEe---CCCEEEEEcCCCCeeeccccCCC-CCcchhhhhhcccccccccccceeEEEEEEEeCCCCC
Q 003171 499 SPVIKMAV---GAGYIFTLANHGGIRGWNVTSPG-PLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRA 566 (842)
Q Consensus 499 ~~V~sla~---dg~~l~S~S~DgtIrvWd~~~~~-~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~ 566 (842)
++|.++.+ +..+++|+|+|+++|+||+++.. |+.++..+ +-||+..+||-+....
T Consensus 346 nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-------------~DKvl~vdW~~~~~Iv 404 (423)
T KOG0313|consen 346 NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-------------NDKVLSVDWNEGGLIV 404 (423)
T ss_pred hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-------------CceEEEEeccCCceEE
Confidence 99999985 45579999999999999999877 88877543 3369999999875443
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.94 E-value=2e-25 Score=222.52 Aligned_cols=265 Identities=17% Similarity=0.224 Sum_probs=197.6
Q ss_pred CCccccCceeEEEEec------------CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCC
Q 003171 126 LRETQIGCFLRTIVCT------------EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSS 193 (842)
Q Consensus 126 ~~~~~~~~~~~~l~~~------------~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 193 (842)
+||..+|.|.|+|.-. ++.|.++..-.||+||+.+.... +.+.| .++ +..
T Consensus 24 fWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~---------------Pv~t~--e~h-~kN 85 (311)
T KOG0315|consen 24 FWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPN---------------PVATF--EGH-TKN 85 (311)
T ss_pred eeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCC---------------ceeEE--ecc-CCc
Confidence 5677778888887522 33444466779999999765431 11222 234 778
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-CEEEeeCCCcEEEEeCCCc
Q 003171 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPWEAI 272 (842)
Q Consensus 194 V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd~~t~ 272 (842)
|.++.|..+|++++|||.||++||||+... . +...-.|..+|++|+..|+. .|++|..+|.|||||+...
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~--------~-~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--------S-CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCc--------c-cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 999999999999999999999999999874 2 23334577999999999985 4999999999999999654
Q ss_pred cceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecC
Q 003171 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNID 351 (842)
Q Consensus 273 ~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~ 351 (842)
.+.-.+.++.. ..+..+...++|.+++.+.. ++..+|++-+++....|.+
T Consensus 157 ~c~~~liPe~~----------------------------~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P- 207 (311)
T KOG0315|consen 157 SCTHELIPEDD----------------------------TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEP- 207 (311)
T ss_pred ccccccCCCCC----------------------------cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceE-
Confidence 33333333221 24667788888888888876 5799999876432111100
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg 431 (842)
. -+|..|..-+....+|||+
T Consensus 208 ----------------------------~--------------------------------~k~~ah~~~il~C~lSPd~ 227 (311)
T KOG0315|consen 208 ----------------------------V--------------------------------HKFQAHNGHILRCLLSPDV 227 (311)
T ss_pred ----------------------------h--------------------------------hheecccceEEEEEECCCC
Confidence 0 0133455556677899999
Q ss_pred c-EEEEeCCCeEEEEcCCC--CeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE
Q 003171 432 M-IWTGGANGLLLQWDPNG--NRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA 505 (842)
Q Consensus 432 ~-l~Sgs~DgtIrlWD~~g--~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla 505 (842)
+ |+++|.|.++++|+.++ +.-..+++|..+|... +.||+||++|+.|+++|+||++ ++.++.+.||-..-.|++
T Consensus 228 k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 228 KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA 307 (311)
T ss_pred cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence 8 89999999999999965 4556788999999965 4589999999999999999997 889999999998887776
Q ss_pred e
Q 003171 506 V 506 (842)
Q Consensus 506 ~ 506 (842)
.
T Consensus 308 l 308 (311)
T KOG0315|consen 308 L 308 (311)
T ss_pred e
Confidence 4
No 26
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=1.9e-24 Score=234.20 Aligned_cols=346 Identities=15% Similarity=0.196 Sum_probs=244.2
Q ss_pred ceeEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~~~-~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
+|++++....+ .+++ |+|+.+.+||=.++...+. .+. ...| .+.|++|+++||++.++|.
T Consensus 191 kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~------------l~~----~~aH-kGsIfalsWsPDs~~~~T~ 253 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE------------LED----SDAH-KGSIFALSWSPDSTQFLTV 253 (603)
T ss_pred cceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE------------ecC----CCCc-cccEEEEEECCCCceEEEe
Confidence 58888887755 5555 7899999999877654432 110 1123 8899999999999999999
Q ss_pred eCCCcEEEEECCCCcc-----------------------------------CCCCCcceeEEecccCCcEEEEEEecCCC
Q 003171 210 HRDGRIMCWKMNARLL-----------------------------------DSDDGFGEVLSWQAHRGPVLSLCISSYGD 254 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~-----------------------------------~~~~~~~~~~~l~gH~~~V~slafs~dG~ 254 (842)
|.|.++||||+.+..+ -..........+.||..+|++++.++||+
T Consensus 254 SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~ 333 (603)
T KOG0318|consen 254 SADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK 333 (603)
T ss_pred cCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC
Confidence 9999999999988752 00012224556789999999999999998
Q ss_pred -EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCc
Q 003171 255 -LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLS 333 (842)
Q Consensus 255 -L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~t 333 (842)
|+|||.||.|.-|+..++... ++.+ ++| ++.++.++....+..+.++-|++
T Consensus 334 ~i~SgsyDG~I~~W~~~~g~~~-~~~g-----------------~~h----------~nqI~~~~~~~~~~~~t~g~Dd~ 385 (603)
T KOG0318|consen 334 TIYSGSYDGHINSWDSGSGTSD-RLAG-----------------KGH----------TNQIKGMAASESGELFTIGWDDT 385 (603)
T ss_pred EEEeeccCceEEEEecCCcccc-cccc-----------------ccc----------cceEEEEeecCCCcEEEEecCCe
Confidence 899999999999999765321 1111 112 55677788766565555555789
Q ss_pred EEEEEccCCcEEEE--eecCCceEeeeecccCCCccc---ccceEEEEEecCCC------CccceeeeEeecCcceEEec
Q 003171 334 FALWDARTRELLKV--FNIDGQIENRVDMSLLPDFAM---EDEFKTKIVTSSKK------DKAQSSFGFFQRSRNAIMGA 402 (842)
Q Consensus 334 I~lWD~~tg~~l~~--l~~~~~~~~~~~~s~~~~~~~---~~~~~~~~~s~~~~------~~~~~s~~~~~~~~~~~~g~ 402 (842)
+++-++..+.+-+. +....|.. .++........+ +.+ +.+++..++ .-....+++.+.+..+.+|.
T Consensus 386 l~~~~~~~~~~t~~~~~~lg~QP~-~lav~~d~~~avv~~~~~--iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG 462 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLGSQPK-GLAVLSDGGTAVVACISD--IVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG 462 (603)
T ss_pred EEEEecccCcccccceeecCCCce-eEEEcCCCCEEEEEecCc--EEEEecCCcceeeccccccceEEEcCCCCEEEEec
Confidence 99998865443222 12122221 111111100100 111 112222111 11223567778888889999
Q ss_pred CCcEEEEee-c-------CccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCe-eeeeecCCccEEEEE--ecC
Q 003171 403 ADAVRRVAA-K-------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNR-LQDFQYLPFAVQCLC--TFG 469 (842)
Q Consensus 403 ~~~v~~v~~-~-------g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~-l~~l~~H~~~V~sls--~dG 469 (842)
.++-..+.. . +.+.+|...++.+++|||+. |++|...+.|.+||+ +.+. ...+.-|+..|+|++ |+.
T Consensus 463 ~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n 542 (603)
T KOG0318|consen 463 QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN 542 (603)
T ss_pred ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence 888665543 2 24456888999999999998 788888899999999 4443 334556999999996 577
Q ss_pred CEEEEEecCcEEEEEeCC--CcccccccccccCEEEEEe-CCCEEEEEcCCCCeeecccc
Q 003171 470 SQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 470 ~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~-dg~~l~S~S~DgtIrvWd~~ 526 (842)
+++|+||.|-.|.||+++ .+.+....+|...|+.|.+ |...++|.|.|..||+|++.
T Consensus 543 ~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 543 KLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 899999999999999987 4667778899999999986 99999999999999999974
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=3.6e-25 Score=255.00 Aligned_cols=238 Identities=21% Similarity=0.352 Sum_probs=196.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..+|.|+.|+++|+.+++++.|++|++|+..+.. . ...+.+.+|...|++++|+|+|+ +++|+.|++|||||+
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~-----~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK-----S-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeeccccc-----c-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 5689999999999999999999999999996651 0 25666789999999999999997 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
......+. .+++| ...+.++++.+.+..+.|++ |.+|+|||+++++++++|
T Consensus 233 ~~~~~~~~------------------~l~gH----------~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l 284 (456)
T KOG0266|consen 233 KDDGRNLK------------------TLKGH----------STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL 284 (456)
T ss_pred cCCCeEEE------------------EecCC----------CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee
Confidence 33211111 12334 56788899999888999988 579999999999987776
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
.+|. ..|.+++|+
T Consensus 285 ~~hs-------------------------------------------------------------------~~is~~~f~ 297 (456)
T KOG0266|consen 285 KGHS-------------------------------------------------------------------DGISGLAFS 297 (456)
T ss_pred eccC-------------------------------------------------------------------CceEEEEEC
Confidence 5443 335567888
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCC--eeeeeecCCcc--EEEEE--ecCCEEEEEecCcEEEEEeCC-Cccccccccccc
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGN--RLQDFQYLPFA--VQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS 499 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~--~l~~l~~H~~~--V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~ 499 (842)
+||. |++++.|+.|++||+ ++. |+.++.++... |+++. ++|++|++++.|+++++||+. +++...+.+|..
T Consensus 298 ~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 298 PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 8887 789999999999999 677 67888887766 77765 579999999999999999998 889999999999
Q ss_pred CEEEEE-----eCCCEEEEEcCCCCeeeccccCCC
Q 003171 500 PVIKMA-----VGAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 500 ~V~sla-----~dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
.+.++. .++.++++++.|+.|.+|++.+..
T Consensus 378 ~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 378 LVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred cceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 776653 478999999999999999987643
No 28
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=2.5e-25 Score=233.23 Aligned_cols=288 Identities=18% Similarity=0.245 Sum_probs=199.4
Q ss_pred ceeEEEEecCCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEE---cCCCCEEEE
Q 003171 133 CFLRTIVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVG---DEASGVVWS 208 (842)
Q Consensus 133 ~~~~~l~~~~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~---dpdg~~LaS 208 (842)
.++.++...++.++.| .|+.+|+||++- . + .+....| +++|.++++ ++....++|
T Consensus 106 DWVSsv~~~~~~IltgsYDg~~riWd~~G-k---~----------------~~~~~Gh-t~~ik~v~~v~~n~~~~~fvs 164 (423)
T KOG0313|consen 106 DWVSSVKGASKWILTGSYDGTSRIWDLKG-K---S----------------IKTIVGH-TGPIKSVAWVIKNSSSCLFVS 164 (423)
T ss_pred hhhhhhcccCceEEEeecCCeeEEEecCC-c---e----------------EEEEecC-CcceeeeEEEecCCccceEEE
Confidence 3455555556666664 599999999852 1 1 1223344 778876554 333457999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcc-ceeecCCC-c---
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE-KALSLKPE-E--- 282 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~-~~l~~~~~-~--- 282 (842)
||.|.++++|..+.+. +..+.+..-+||.++|-+|...++|. +.|||.|.+|++|+.++.. ..+.-... .
T Consensus 165 as~Dqtl~Lw~~~~~~----~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~ 240 (423)
T KOG0313|consen 165 ASMDQTLRLWKWNVGE----NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKK 240 (423)
T ss_pred ecCCceEEEEEecCch----hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhh
Confidence 9999999999998862 33344444569999999999999997 7899999999999943311 11100000 0
Q ss_pred -eeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeec
Q 003171 283 -RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (842)
Q Consensus 283 -~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (842)
.........-+.+.+.|| ...|..+...+ ...+.+++ |.||+.||+.+|.++.++....
T Consensus 241 ~~~~~~~~~r~P~vtl~GH----------t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-------- 301 (423)
T KOG0313|consen 241 QKREKEGGTRTPLVTLEGH----------TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-------- 301 (423)
T ss_pred hhhhhcccccCceEEeccc----------ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc--------
Confidence 000000000123344444 55677777765 55667777 5799999999988755443211
Q ss_pred ccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCC
Q 003171 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGAN 439 (842)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~D 439 (842)
...++..+|... |++||.|
T Consensus 302 ------------------------------------------------------------sl~~i~~~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 302 ------------------------------------------------------------SLNCISYSPLSKLLASGSSD 321 (423)
T ss_pred ------------------------------------------------------------ceeEeecccccceeeecCCC
Confidence 112333444434 7899999
Q ss_pred CeEEEEcC-CC--C-eeeeeecCCccEEEEEe--c-CCEEEEEecCcEEEEEeCC-Cc-ccccccccccCEEEEEe-CCC
Q 003171 440 GLLLQWDP-NG--N-RLQDFQYLPFAVQCLCT--F-GSQIWVGYMNGIVQVLDLE-GN-LLGGWVAHSSPVIKMAV-GAG 509 (842)
Q Consensus 440 gtIrlWD~-~g--~-~l~~l~~H~~~V~sls~--d-G~~LasGs~DgtIrlWD~~-g~-~i~~l~gH~~~V~sla~-dg~ 509 (842)
..|||||+ ++ . ..++|.+|+++|.++.. . --++++|+.|++++|||++ .+ .+..+.+|.+.|.++.+ .+.
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~ 401 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG 401 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc
Confidence 99999999 43 3 45789999999999854 3 3489999999999999997 44 79999999999999996 677
Q ss_pred EEEEEcCCCCeeecc
Q 003171 510 YIFTLANHGGIRGWN 524 (842)
Q Consensus 510 ~l~S~S~DgtIrvWd 524 (842)
+++|||.|++||+..
T Consensus 402 ~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 402 LIVSGGADNKLRIFK 416 (423)
T ss_pred eEEeccCcceEEEec
Confidence 999999999999976
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.3e-24 Score=243.59 Aligned_cols=270 Identities=16% Similarity=0.276 Sum_probs=201.1
Q ss_pred eeEEEEec--CCEEEEecC--CCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 134 FLRTIVCT--EEQLWAGGE--NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~~~D--~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
.|.+++.. ++.+-.|.- +.+-||+...-. .-+++..| ...+.|++++|||++||||
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-------------------YVlKQQgH-~~~i~~l~YSpDgq~iaTG 368 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-------------------YVLKQQGH-SDRITSLAYSPDGQLIATG 368 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccc-------------------eeeecccc-ccceeeEEECCCCcEEEec
Confidence 45555544 655555543 589999986421 12344455 7789999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
+.||+|||||...| -|..+|..|+..|+++.|+..|+ |+|.|-|||||.||+....+--+++..
T Consensus 369 ~eDgKVKvWn~~Sg--------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P------- 433 (893)
T KOG0291|consen 369 AEDGKVKVWNTQSG--------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP------- 433 (893)
T ss_pred cCCCcEEEEeccCc--------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC-------
Confidence 99999999999988 57899999999999999999998 789999999999999653221111100
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCC--cEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL--SFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~--tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
. .....|++.++.|..|..|+-. .|.+|+++||+++.+|.+|.
T Consensus 434 ---------------~------p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE-------------- 478 (893)
T KOG0291|consen 434 ---------------E------PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE-------------- 478 (893)
T ss_pred ---------------C------ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC--------------
Confidence 0 1134578888888877766633 69999999999987766543
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEE
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQW 445 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlW 445 (842)
+.|..+.|+|+|. |+|||.|+|||+|
T Consensus 479 -----------------------------------------------------gPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 479 -----------------------------------------------------GPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred -----------------------------------------------------CcceeeEEccccCeEEeccccceEEEE
Confidence 3344567888887 8999999999999
Q ss_pred cC-CC-CeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Ccccc----------------ccc----ccccC
Q 003171 446 DP-NG-NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLG----------------GWV----AHSSP 500 (842)
Q Consensus 446 D~-~g-~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~----------------~l~----gH~~~ 500 (842)
|+ .. ....++. +...|+.++ |||+.|++++.||.|.+||.+ +..+. .++ +-...
T Consensus 506 ~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~ 584 (893)
T KOG0291|consen 506 DIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKT 584 (893)
T ss_pred EeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCc
Confidence 99 43 3445554 566777765 689999999999999999964 22111 111 12234
Q ss_pred EEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 501 VIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 501 V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.++|. +||..+++||..+.|+++++..
T Consensus 585 Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 585 FTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred eEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 55554 6999999999999999999754
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=1.5e-23 Score=227.37 Aligned_cols=332 Identities=15% Similarity=0.175 Sum_probs=218.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec---ccCCcEEEEEEecCCC-EEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ---AHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~---gH~~~V~slafs~dG~-L~SgS~DgtIrv 266 (842)
..-|.|+.++|||.+++|.+.||+|.++|-.+| +....+. +|++.|.+|+|+||++ ++|+|.|+++||
T Consensus 190 skFV~~VRysPDG~~Fat~gsDgki~iyDGktg--------e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 190 SKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG--------EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI 261 (603)
T ss_pred ccceeeEEECCCCCeEEEecCCccEEEEcCCCc--------cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence 668999999999999999999999999999988 5566665 9999999999999997 999999999999
Q ss_pred EeCCCccceeecC----CCceeeeEEEEeeceeec--cc--------ceeccceeeeecCCEEEEEEcCCCCEEEEeC-C
Q 003171 267 WPWEAIEKALSLK----PEERHTAALIVERSYIDL--RS--------HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-F 331 (842)
Q Consensus 267 Wd~~t~~~~l~~~----~~~~~~~~l~~~~s~~~l--~~--------~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~ 331 (842)
||+.+.+...++. .+..++..+.-...++.+ .| ...+..+.+-+.-.+.+|..++++..+.+++ |
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 9998754322221 112222222211111111 00 0011111122355688999999999999999 5
Q ss_pred CcEEEEEccCCcEEEEe-ecCCceEeeeecccCC---CcccccceEEEEEecCC--CCc-----cce-eeeEeecCcceE
Q 003171 332 LSFALWDARTRELLKVF-NIDGQIENRVDMSLLP---DFAMEDEFKTKIVTSSK--KDK-----AQS-SFGFFQRSRNAI 399 (842)
Q Consensus 332 ~tI~lWD~~tg~~l~~l-~~~~~~~~~~~~s~~~---~~~~~~~~~~~~~s~~~--~~~-----~~~-s~~~~~~~~~~~ 399 (842)
+.|.-||..+|..-+.. .+|...+..+..+... ...+|+.++..-..... +.. .|. .+....++..++
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 78999999998875443 3343333333333311 12345544421111110 000 000 111111122233
Q ss_pred EecCCcEEEEeec-Cccc-cCCCceEEEEECCCCc-EEEEeCCCeEEEEcCCC-Ce--eeeeecCCccEEEEE--ecCCE
Q 003171 400 MGAADAVRRVAAK-GGFG-DDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNG-NR--LQDFQYLPFAVQCLC--TFGSQ 471 (842)
Q Consensus 400 ~g~~~~v~~v~~~-g~~~-~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g-~~--l~~l~~H~~~V~sls--~dG~~ 471 (842)
......+..+... +.+. .-.....+++++|++. ++.|+.|+.|.++.++| +. ...+..|..+|++++ +||+|
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence 3333333333321 1111 1123456799999998 78999999999999976 32 224557999999885 68999
Q ss_pred EEEEecCcEEEEEeCCCcc--cccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCC
Q 003171 472 IWVGYMNGIVQVLDLEGNL--LGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 472 LasGs~DgtIrlWD~~g~~--i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
||+|...+.|-+||++.+. ...|.-|+..|.+|++ +.++++|||-|..|.+|++..|..
T Consensus 502 la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence 9999999999999998543 5567789999999995 677899999999999999886643
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=4.1e-25 Score=225.67 Aligned_cols=264 Identities=20% Similarity=0.241 Sum_probs=200.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.+.|+++.|+|+|..++||+.|..|.+|+..+.. +.-..++||+++|..|.|.+|+. |+|+|.|++|+.||.
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccccc-------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 8899999999999999999999999999987642 55677899999999999999998 899999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
+++++..++..+...+.+ +.-.. +-..|.|++ |+|++|||+++++++++
T Consensus 120 ~tG~~~rk~k~h~~~vNs-----------------------------~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNS-----------------------------LDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred ccceeeehhccccceeee-----------------------------cCccccCCeEEEecCCCceEEEEeecccchhhc
Confidence 998876665443332221 11111 122444555 47999999999999888
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee----cC--ccccCCCc
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA----KG--GFGDDNRR 421 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~----~g--~~~~~~~~ 421 (842)
+.-.-+. . +++|.+.+.+.+.|.-+....+|. .+ .+.+|...
T Consensus 171 ~~~kyql-t-------------------------------Av~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt 218 (338)
T KOG0265|consen 171 FENKYQL-T-------------------------------AVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT 218 (338)
T ss_pred cccceeE-E-------------------------------EEEecccccceeeccccCceeeeccccCcceEEeecccCc
Confidence 7432221 1 123333333444444444344443 11 34567788
Q ss_pred eEEEEECCCCc-EEEEeCCCeEEEEcCC----C-CeeeeeecCCc--cEEEE----EecCCEEEEEecCcEEEEEeCCC-
Q 003171 422 TEALTTSIDGM-IWTGGANGLLLQWDPN----G-NRLQDFQYLPF--AVQCL----CTFGSQIWVGYMNGIVQVLDLEG- 488 (842)
Q Consensus 422 v~al~~s~dg~-l~Sgs~DgtIrlWD~~----g-~~l~~l~~H~~--~V~sl----s~dG~~LasGs~DgtIrlWD~~g- 488 (842)
|+.+..+++|. +.+-+.|.++++||+. + +|++.+++|.. .++.| +++++.+.+|+.|+.+.+||..+
T Consensus 219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 89999999998 8999999999999983 3 57999998553 34433 57899999999999999999986
Q ss_pred cccccccccccCEEEEEeC--CCEEEEEcCCCCeee
Q 003171 489 NLLGGWVAHSSPVIKMAVG--AGYIFTLANHGGIRG 522 (842)
Q Consensus 489 ~~i~~l~gH~~~V~sla~d--g~~l~S~S~DgtIrv 522 (842)
.++..|.||.+.|+++++. ...|.|++.|++|.+
T Consensus 299 ~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 299 RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 6899999999999999964 457999999999865
No 32
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=3.2e-25 Score=256.00 Aligned_cols=235 Identities=22% Similarity=0.349 Sum_probs=193.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEE-ecccCCcEEEEEEecCC-CEEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS-WQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~-l~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd 268 (842)
...++|..+. .+.+.+|+.|++|++|+..++ ..+.. +.||.+.|.+++|..-+ .|+|||.|.|+||||
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccc--------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 5578999998 578999999999999999987 56666 99999999999998733 489999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
..++++...+.. | .+.+.++.. .+.++.+|+ |.+|++|++.++.++.+
T Consensus 278 ~~sg~C~~~l~g-------------------h----------~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l 326 (537)
T KOG0274|consen 278 CSTGECTHSLQG-------------------H----------TSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNL 326 (537)
T ss_pred cCCCcEEEEecC-------------------C----------CceEEEEEc--cCceEeeccCCceEEEEeccCcceEEE
Confidence 988776544432 2 223444433 234455544 67999999999999888
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
+.+|.. .|.++..
T Consensus 327 ~~~h~~-------------------------------------------------------------------~V~~v~~ 339 (537)
T KOG0274|consen 327 LRGHTG-------------------------------------------------------------------PVNCVQL 339 (537)
T ss_pred eccccc-------------------------------------------------------------------cEEEEEe
Confidence 764332 2233333
Q ss_pred CCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecC-CEEEEEecCcEEEEEeCC-C-cccccccccccCEEE
Q 003171 428 SIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG-SQIWVGYMNGIVQVLDLE-G-NLLGGWVAHSSPVIK 503 (842)
Q Consensus 428 s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG-~~LasGs~DgtIrlWD~~-g-~~i~~l~gH~~~V~s 503 (842)
. ++.+++|+.|++|++||+ +++|++++++|+.+|.++.+++ .++++|+.|++|++||++ . +|+.++.+|.+.|.+
T Consensus 340 ~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~ 418 (537)
T KOG0274|consen 340 D-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSS 418 (537)
T ss_pred c-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccc
Confidence 3 456899999999999999 8999999999999999999999 999999999999999998 4 599999999999999
Q ss_pred EEeCCCEEEEEcCCCCeeeccccCCCCCcch
Q 003171 504 MAVGAGYIFTLANHGGIRGWNVTSPGPLDSI 534 (842)
Q Consensus 504 la~dg~~l~S~S~DgtIrvWd~~~~~~~d~~ 534 (842)
+...++.|+|++.|++||+||......+..+
T Consensus 419 l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 419 LLLRDNFLVSSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred cccccceeEeccccccEEEeecccCceeeee
Confidence 9999999999999999999998877665554
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=2e-24 Score=224.35 Aligned_cols=268 Identities=15% Similarity=0.271 Sum_probs=204.8
Q ss_pred CceeEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE
Q 003171 132 GCFLRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 132 ~~~~~~l~~~~~-~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS 208 (842)
-.++|+++.+.. +.++ +.|++++|||++++.... +-.+| ...|..+++|+.--+|+|
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-------------------tltGh-i~~vr~vavS~rHpYlFs 210 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-------------------TLTGH-IETVRGVAVSKRHPYLFS 210 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-------------------eecch-hheeeeeeecccCceEEE
Confidence 347999998844 6665 469999999998864321 11122 668999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeE
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
++.|+.||.||++.. +-++..-||-..|.+|+..|.-+ |+||+.|.++||||+.+......+
T Consensus 211 ~gedk~VKCwDLe~n--------kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l--------- 273 (460)
T KOG0285|consen 211 AGEDKQVKCWDLEYN--------KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL--------- 273 (460)
T ss_pred ecCCCeeEEEechhh--------hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe---------
Confidence 999999999999986 66788899999999999999765 789999999999999774332222
Q ss_pred EEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
.|| .+.|..+.+.+.+..|.+++ |.||++||++.|+-..++..|
T Consensus 274 ----------~GH----------~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h--------------- 318 (460)
T KOG0285|consen 274 ----------SGH----------TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH--------------- 318 (460)
T ss_pred ----------cCC----------CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecc---------------
Confidence 233 44566667766667777777 789999999988765554332
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEE
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQW 445 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlW 445 (842)
...|.+++..|.-. ++|+|.|. |+.|
T Consensus 319 ----------------------------------------------------kksvral~lhP~e~~fASas~dn-ik~w 345 (460)
T KOG0285|consen 319 ----------------------------------------------------KKSVRALCLHPKENLFASASPDN-IKQW 345 (460)
T ss_pred ----------------------------------------------------cceeeEEecCCchhhhhccCCcc-ceec
Confidence 22344555556544 68899887 9999
Q ss_pred cC-CCCeeeeeecCCccEEEEEec-CCEEEEEecCcEEEEEeCC-Cc---ccccccc-----cccCEEEEEe--CCCEEE
Q 003171 446 DP-NGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLE-GN---LLGGWVA-----HSSPVIKMAV--GAGYIF 512 (842)
Q Consensus 446 D~-~g~~l~~l~~H~~~V~sls~d-G~~LasGs~DgtIrlWD~~-g~---~i~~l~g-----H~~~V~sla~--dg~~l~ 512 (842)
++ .|+.++.+.+|+.-|++++.. ..++++|+..|+|..||-+ |- ..++... ....|++-.+ .|..|+
T Consensus 346 ~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 346 KLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred cCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 99 899999999999999999874 4589999999999999976 42 2222221 1234665555 477899
Q ss_pred EEcCCCCeeecc
Q 003171 513 TLANHGGIRGWN 524 (842)
Q Consensus 513 S~S~DgtIrvWd 524 (842)
|+.+|++|++|.
T Consensus 426 t~eadKtIk~~k 437 (460)
T KOG0285|consen 426 TGEADKTIKMYK 437 (460)
T ss_pred eccCCcceEEEe
Confidence 999999999997
No 34
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=1.7e-23 Score=234.56 Aligned_cols=370 Identities=15% Similarity=0.188 Sum_probs=249.0
Q ss_pred eEEEEecCCEE--EEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 135 LRTIVCTEEQL--WAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 135 ~~~l~~~~~~l--~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
+.++....+.+ ..| .||.|++|++.+.. .+++..+| ..+|+|+.||..|..|+|||.
T Consensus 68 vt~l~~~~d~l~lAVGYaDGsVqif~~~s~~-------------------~~~tfngH-K~AVt~l~fd~~G~rlaSGsk 127 (888)
T KOG0306|consen 68 VTCLRSSDDILLLAVGYADGSVQIFSLESEE-------------------ILITFNGH-KAAVTTLKFDKIGTRLASGSK 127 (888)
T ss_pred EEEeeccCCcceEEEEecCceEEeeccCCCc-------------------eeeeeccc-ccceEEEEEcccCceEeecCC
Confidence 44444444433 334 69999999987421 12444566 889999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCce--e----
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEER--H---- 284 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~--~---- 284 (842)
|+.|.+||+-+. .-+..+.||...|+.+.|..+.+ |+|.|.|+.||+||+++..+-.++..+.. +
T Consensus 128 Dt~IIvwDlV~E--------~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~ 199 (888)
T KOG0306|consen 128 DTDIIVWDLVGE--------EGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVL 199 (888)
T ss_pred CccEEEEEeccc--------eeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEE
Confidence 999999999875 45778999999999999998555 78999999999999987442111100000 0
Q ss_pred -----------------------------------------------eeEEEEeec--e---------------------
Q 003171 285 -----------------------------------------------TAALIVERS--Y--------------------- 294 (842)
Q Consensus 285 -----------------------------------------------~~~l~~~~s--~--------------------- 294 (842)
...+....+ +
T Consensus 200 ~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~ 279 (888)
T KOG0306|consen 200 DEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEI 279 (888)
T ss_pred ecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHH
Confidence 000000000 0
Q ss_pred ----------------------------------------------eec-ccceec--------cceee-----------
Q 003171 295 ----------------------------------------------IDL-RSHLSV--------NGFSS----------- 308 (842)
Q Consensus 295 ----------------------------------------------~~l-~~~~~~--------~~~~~----------- 308 (842)
+++ .+.... +.++.
T Consensus 280 ~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p 359 (888)
T KOG0306|consen 280 AKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSP 359 (888)
T ss_pred HHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCc
Confidence 000 000000 00000
Q ss_pred -----------eecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc--ccceEEE
Q 003171 309 -----------ILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM--EDEFKTK 375 (842)
Q Consensus 309 -----------~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~--~~~~~~~ 375 (842)
.+-++|+.++++.+...++|++...|++|+..|.+|++++... .+..+ .|-+....-+ ....++.
T Consensus 360 ~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~-~Fvpgd~~Iv~G~k~Gel~ 437 (888)
T KOG0306|consen 360 EADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILAS-KFVPGDRYIVLGTKNGELQ 437 (888)
T ss_pred cccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEE-EecCCCceEEEeccCCceE
Confidence 0124688888888888888888889999999999999987532 11111 1111000000 0000000
Q ss_pred EE---ec------CCCCccceeeeEeecCcceEEecCCcEEEEee-----c--Cc-----------cccCCCceEEEEEC
Q 003171 376 IV---TS------SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-----K--GG-----------FGDDNRRTEALTTS 428 (842)
Q Consensus 376 ~~---s~------~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-----~--g~-----------~~~~~~~v~al~~s 428 (842)
++ +. ...+.+.-++...+++...++|++|.+.+.|. . |+ ..+-...|.++.+|
T Consensus 438 vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 438 VFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred EEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence 00 00 01233344556666677778888888777765 1 11 11223567889999
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEE
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s 503 (842)
|||+ |+.+=-|+||+++-+ +-+..-.+.||.-||.|+ ++|++.|++||.|++|++|-+. |.|.+++-+|.+.|.+
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~ 597 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS 597 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeE
Confidence 9999 566668999999999 567777888999999997 7899999999999999999999 9999999999999999
Q ss_pred EEe--CCCEEEEEcCCCCeeeccccCCCCCcch
Q 003171 504 MAV--GAGYIFTLANHGGIRGWNVTSPGPLDSI 534 (842)
Q Consensus 504 la~--dg~~l~S~S~DgtIrvWd~~~~~~~d~~ 534 (842)
|.+ ....++|+|.|+.||-||-..+..+..+
T Consensus 598 V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L 630 (888)
T KOG0306|consen 598 VQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL 630 (888)
T ss_pred EEEcccceeEEEecCcceEEeechhhhhhheee
Confidence 985 4456889999999999997665554443
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=1.4e-23 Score=258.43 Aligned_cols=275 Identities=15% Similarity=0.146 Sum_probs=195.8
Q ss_pred ceeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC-CCCEEEE
Q 003171 133 CFLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWS 208 (842)
Q Consensus 133 ~~~~~l~~~~~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp-dg~~LaS 208 (842)
..+.+++.+.+ .+.+ |.|+.|+|||+........ ....|..... +...|.++++++ ++.+|+|
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~------------~~~~~~~~~~-~~~~v~~l~~~~~~~~~las 550 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR------------DIHYPVVELA-SRSKLSGICWNSYIKSQVAS 550 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc------------ccccceEEec-ccCceeeEEeccCCCCEEEE
Confidence 34666776633 4444 6699999999864211110 1111222212 256799999987 4789999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec-CCC-EEEeeCCCcEEEEeCCCccceeecCCCceeee
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~ 286 (842)
|+.||+|++||+.++ +.+..+.+|.+.|++|+|+| ++. |+|||.|++|++||+.++.....+.
T Consensus 551 ~~~Dg~v~lWd~~~~--------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~------- 615 (793)
T PLN00181 551 SNFEGVVQVWDVARS--------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK------- 615 (793)
T ss_pred EeCCCeEEEEECCCC--------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-------
Confidence 999999999999986 67788899999999999997 666 7899999999999997643211110
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEE-cCCCCEEEEeC-CCcEEEEEccCCcE-EEEeecCCceEeeeecccC
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAG-FLSFALWDARTREL-LKVFNIDGQIENRVDMSLL 363 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las-~~~~~~v~s~s-~~tI~lWD~~tg~~-l~~l~~~~~~~~~~~~s~~ 363 (842)
. ...+.++.+ .+++..+++++ +++|++||++++.. +.++
T Consensus 616 ------------~-----------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~--------------- 657 (793)
T PLN00181 616 ------------T-----------KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM--------------- 657 (793)
T ss_pred ------------c-----------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe---------------
Confidence 0 123445555 34566777776 67999999876431 1111
Q ss_pred CCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEE
Q 003171 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLL 443 (842)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIr 443 (842)
..|...|.++.|.++..+++++.|++|+
T Consensus 658 ----------------------------------------------------~~h~~~V~~v~f~~~~~lvs~s~D~~ik 685 (793)
T PLN00181 658 ----------------------------------------------------IGHSKTVSYVRFVDSSTLVSSSTDNTLK 685 (793)
T ss_pred ----------------------------------------------------cCCCCCEEEEEEeCCCEEEEEECCCEEE
Confidence 1233345566676555689999999999
Q ss_pred EEcCC-------CCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Ccccc-------------cccccccC
Q 003171 444 QWDPN-------GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLG-------------GWVAHSSP 500 (842)
Q Consensus 444 lWD~~-------g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~-------------~l~gH~~~ 500 (842)
+||+. +++++++.+|...+++++ ++|.+|++|+.|++|+||+.. ...+. ....|...
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 99983 257889999999888775 468899999999999999975 22211 12345667
Q ss_pred EEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 501 VIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 501 V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
|.++++ ++..+++|+.||+|++|++
T Consensus 766 V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999885 6789999999999999985
No 36
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.3e-24 Score=222.95 Aligned_cols=266 Identities=15% Similarity=0.165 Sum_probs=205.0
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~ 227 (842)
+.|.+|++||..++..... ++ .| +.+|..++|+..|++|+|+|.|-.+++||.++-
T Consensus 127 s~d~tikv~D~~tg~~e~~-----------------Lr--GH-t~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~---- 182 (406)
T KOG0295|consen 127 SEDATIKVFDTETGELERS-----------------LR--GH-TDSVFDISFDASGKYLATCSSDLSAKLWDFDTF---- 182 (406)
T ss_pred cCCceEEEEEccchhhhhh-----------------hh--cc-ccceeEEEEecCccEEEecCCccchhheeHHHH----
Confidence 4699999999988654211 22 23 678999999999999999999999999999874
Q ss_pred CCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccce
Q 003171 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (842)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~ 306 (842)
++++..+.||.-.|.+++|-|.|. ++|+|.|.|||.|+++++.+..++.++.
T Consensus 183 ---~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~------------------------ 235 (406)
T KOG0295|consen 183 ---FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS------------------------ 235 (406)
T ss_pred ---HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch------------------------
Confidence 377888999999999999999997 8999999999999999987665554432
Q ss_pred eeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCcc
Q 003171 307 SSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKA 385 (842)
Q Consensus 307 ~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~ 385 (842)
.-++.+....+|..+++++ +.++++|-+.+++|...|..|..+...+.+.+....+- +. ...+. .+
T Consensus 236 -----ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~---i~--~at~~-~~-- 302 (406)
T KOG0295|consen 236 -----EWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS---IS--EATGS-TN-- 302 (406)
T ss_pred -----HhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcc---hh--hccCC-CC--
Confidence 2355666666677777766 68999999999998888888777554444433221110 00 00000 00
Q ss_pred ceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeec
Q 003171 386 QSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY 457 (842)
Q Consensus 386 ~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~ 457 (842)
.+.....++.|...++|. .| ++.+|...|..++|+|.|+ |+|+..|+++++||+ +++|.+++..
T Consensus 303 --------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 303 --------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA 374 (406)
T ss_pred --------CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC
Confidence 012345666777777765 23 4668999999999999998 899999999999999 7999999999
Q ss_pred CCccEEEEEec--CCEEEEEecCcEEEEEe
Q 003171 458 LPFAVQCLCTF--GSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 458 H~~~V~sls~d--G~~LasGs~DgtIrlWD 485 (842)
|..-|+++.++ -.++++|+.|.++++|.
T Consensus 375 h~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 375 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999875 45999999999999996
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=3.3e-25 Score=233.97 Aligned_cols=263 Identities=22% Similarity=0.245 Sum_probs=208.2
Q ss_pred EecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003171 139 VCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (842)
Q Consensus 139 ~~~~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrl 217 (842)
+.++++|..|+ -|.+-+||........+ ...| .++|.++.++++|.+++||+.||.||.
T Consensus 105 tPeGRRLltgs~SGEFtLWNg~~fnFEti-------------------lQaH-Ds~Vr~m~ws~~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 105 TPEGRRLLTGSQSGEFTLWNGTSFNFETI-------------------LQAH-DSPVRTMKWSHNGTWMISGDKGGMIKY 164 (464)
T ss_pred cCCCceeEeecccccEEEecCceeeHHHH-------------------hhhh-cccceeEEEccCCCEEEEcCCCceEEe
Confidence 34577888765 57999999854332222 1234 889999999999999999999999999
Q ss_pred EECCCCccCCCCCcceeEEecccC-CcEEEEEEecCC-CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeecee
Q 003171 218 WKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (842)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG-~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~ 295 (842)
|+.+- ..++..++|. ..|++|+|||+. +++|+|+||+|||||..-.+....
T Consensus 165 Wqpnm---------nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v------------------ 217 (464)
T KOG0284|consen 165 WQPNM---------NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV------------------ 217 (464)
T ss_pred cccch---------hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe------------------
Confidence 99776 3456667765 999999999965 489999999999999854221111
Q ss_pred ecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEE
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (842)
|+|| .-+|+++.=.+....|++++ |..|++||.++|.|+.++.+|
T Consensus 218 -L~GH----------gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~H----------------------- 263 (464)
T KOG0284|consen 218 -LRGH----------GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGH----------------------- 263 (464)
T ss_pred -eccC----------CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhc-----------------------
Confidence 2334 44678888888888899988 568999999999997665433
Q ss_pred EEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCee
Q 003171 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRL 452 (842)
Q Consensus 375 ~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l 452 (842)
...|.++.|++++. |+++|.|.+++++|+ .-+.+
T Consensus 264 --------------------------------------------KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 264 --------------------------------------------KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred --------------------------------------------cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 23455677888877 899999999999999 57889
Q ss_pred eeeecCCccEEEEE--e-cCCEEEEEecCcEEEEEeCC-Ccccc-cccccccCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 453 QDFQYLPFAVQCLC--T-FGSQIWVGYMNGIVQVLDLE-GNLLG-GWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 453 ~~l~~H~~~V~sls--~-dG~~LasGs~DgtIrlWD~~-g~~i~-~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
+++++|...|+++. | ....+.+|+.||.|..|.+. .+.+. .-.+|...|++++. =|..|+|||.|.++|+|.-
T Consensus 300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99999999999995 4 35689999999999999987 44444 44699999999995 5778999999999999974
Q ss_pred c
Q 003171 526 T 526 (842)
Q Consensus 526 ~ 526 (842)
.
T Consensus 380 ~ 380 (464)
T KOG0284|consen 380 N 380 (464)
T ss_pred C
Confidence 3
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=6.8e-23 Score=215.18 Aligned_cols=266 Identities=21% Similarity=0.329 Sum_probs=203.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|+.++|++++|++|+.||.|++|++.++ .....+.+|...|.++.|+|+++ |++++.|+.|++|++
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--------ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--------CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 779999999999999999999999999999886 45677889999999999999995 889999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.+.+....+.. + ...+.++...+.+..+++++ ++.+++||+.+++.+..+
T Consensus 81 ~~~~~~~~~~~-------------------~----------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 81 ETGECVRTLTG-------------------H----------TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred CcccceEEEec-------------------c----------CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe
Confidence 76422211110 1 22466677776667777777 789999999988887777
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee-c-----CccccCCCce
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-K-----GGFGDDNRRT 422 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~-----g~~~~~~~~v 422 (842)
..+......+.+.+ .+..++.+..++..+++. . ..+..+...+
T Consensus 132 ~~~~~~i~~~~~~~-------------------------------~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 180 (289)
T cd00200 132 RGHTDWVNSVAFSP-------------------------------DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180 (289)
T ss_pred ccCCCcEEEEEEcC-------------------------------cCCEEEEEcCCCcEEEEEccccccceeEecCcccc
Confidence 64433222222222 222223333233333322 1 1233455678
Q ss_pred EEEEECCCC-cEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cccccccccc
Q 003171 423 EALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (842)
Q Consensus 423 ~al~~s~dg-~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH 497 (842)
.++.+++++ .+++++.|+.|++||. .++.+..+..|...|.++.+ ++.++++++.|+.|++||+. ++.+..+.+|
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 260 (289)
T cd00200 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH 260 (289)
T ss_pred ceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc
Confidence 899999999 4888888999999999 58888888889999999875 46788888789999999987 7788888899
Q ss_pred ccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 498 SSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 498 ~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
...|.++.+ ++..+++++.|+.|++|+
T Consensus 261 ~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 261 TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999885 558999999999999996
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.3e-24 Score=240.68 Aligned_cols=299 Identities=13% Similarity=0.202 Sum_probs=236.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
++.|..++|.|.--+|.++...|.|++||..-+ .++..|.+|.+||..|+|+|.+- ++||++|..||||+.
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~--------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhh--------hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 456888999999999999999999999998776 57788999999999999999987 579999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l 348 (842)
.+..+.+++.+ | -..|+.+.+.+.-..|.|++| +||+||+..+++|+.++
T Consensus 81 k~rrclftL~G-------------------H----------lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl 131 (1202)
T KOG0292|consen 81 KTRRCLFTLLG-------------------H----------LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL 131 (1202)
T ss_pred ccceehhhhcc-------------------c----------cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE
Confidence 77555554433 2 235777888887788888885 79999999999999999
Q ss_pred ecCCceEeeeecccC----CCcccccceEEEEEecCCCCccceeeeEee--cCcc---eEEecCCcEEEEeecCccccCC
Q 003171 349 NIDGQIENRVDMSLL----PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ--RSRN---AIMGAADAVRRVAAKGGFGDDN 419 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~----~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~--~~~~---~~~g~~~~v~~v~~~g~~~~~~ 419 (842)
.+|.+.+....|.+. ...+.|+++|+|..++.++...... ++.+ .+.+ -+.|..|.|... .+.+|.
T Consensus 132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg-~~e~~~~~~~~~~dLfg~~DaVVK~----VLEGHD 206 (1202)
T KOG0292|consen 132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG-SLEDQMRGQQGNSDLFGQTDAVVKH----VLEGHD 206 (1202)
T ss_pred ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC-CchhhhhccccchhhcCCcCeeeee----eecccc
Confidence 999998777777663 4456788889888887754332211 1111 1111 144555555443 367899
Q ss_pred CceEEEEECCCC-cEEEEeCCCeEEEEcC-CCC--eeeeeecCCccEEEEEecC--CEEEEEecCcEEEEEeCC-Ccccc
Q 003171 420 RRTEALTTSIDG-MIWTGGANGLLLQWDP-NGN--RLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLE-GNLLG 492 (842)
Q Consensus 420 ~~v~al~~s~dg-~l~Sgs~DgtIrlWD~-~g~--~l~~l~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~-g~~i~ 492 (842)
..|...+|.|.- .++||+.|..||+|.. +.+ .+.+..||.+.|.|+-+++ ..|.|.|.|++|||||++ .+.++
T Consensus 207 RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~ 286 (1202)
T KOG0292|consen 207 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQ 286 (1202)
T ss_pred cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccccee
Confidence 999999998854 4799999999999999 343 4667889999999998887 599999999999999998 56799
Q ss_pred cccccccCEEEEEeCCCE-EEEEcCCCCeeeccccCCCCC
Q 003171 493 GWVAHSSPVIKMAVGAGY-IFTLANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 493 ~l~gH~~~V~sla~dg~~-l~S~S~DgtIrvWd~~~~~~~ 531 (842)
+++--.+.-|.|+..+.. |+.++.|+++.++.+..-.|.
T Consensus 287 tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa 326 (1202)
T KOG0292|consen 287 TFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPA 326 (1202)
T ss_pred eeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCce
Confidence 998888899999987664 778999999999998754443
No 40
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=2.3e-22 Score=225.51 Aligned_cols=360 Identities=16% Similarity=0.228 Sum_probs=247.4
Q ss_pred EEEEecCC--EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeee---cCCCeEEEEEcCCCCEEEEEe
Q 003171 136 RTIVCTEE--QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK---GVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 136 ~~l~~~~~--~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~V~~la~dpdg~~LaSGs 210 (842)
.+|..+.+ .+.++..+-+.||-..... + +.-.||..+.. +...|.++.|+.|.++|++||
T Consensus 100 ~~i~fSPng~~fav~~gn~lqiw~~P~~~-------------~--~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gs 164 (893)
T KOG0291|consen 100 GAIKFSPNGKFFAVGCGNLLQIWHAPGEI-------------K--NEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGS 164 (893)
T ss_pred ceEEECCCCcEEEEEecceeEEEecCcch-------------h--cccCcceEeeeecCCccceeEEEeccCCceEEecc
Confidence 34444433 4444777889999763311 1 13456644311 167899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeec-----------
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSL----------- 278 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~----------- 278 (842)
.|-++|+|.+..-. + -....+.||+++|-+..|..+.. |+|-|.||.|.+|..+.......-
T Consensus 165 rD~s~rl~~v~~~k----~--~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~ 238 (893)
T KOG0291|consen 165 RDLSARLFGVDGNK----N--LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDE 238 (893)
T ss_pred ccceEEEEEecccc----c--cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccc
Confidence 99999999998741 1 12456889999999999999886 999999999999987631100000
Q ss_pred ----CCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCCc
Q 003171 279 ----KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQ 353 (842)
Q Consensus 279 ----~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~ 353 (842)
..++ .+... .+...+-| .+.-.+.++++..+......|+.+-. +.+.|+.+-.-.++..+....+
T Consensus 239 ~~~~~~Ee-k~~~~----~~~k~~k~-----~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~ 308 (893)
T KOG0291|consen 239 EMDEDGEE-KTHKI----FWYKTKKH-----YLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ 308 (893)
T ss_pred cccccchh-hhcce----EEEEEEee-----eecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc
Confidence 0000 00000 00000000 01111256777777666666666543 5577999999889888877655
Q ss_pred eEeeeecccCCCcccccc-----eEEEEEecC-------CCCccceeeeEeecCcceEEecCCcEEEEeec------Ccc
Q 003171 354 IENRVDMSLLPDFAMEDE-----FKTKIVTSS-------KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGF 415 (842)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~-----~~~~~~s~~-------~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~ 415 (842)
.+..+.+....+...-.. ..+|-|... ..-....++..++++..+++|..|+-.++|.. .+|
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF 388 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF 388 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe
Confidence 444444443333211000 112223221 11223457888888888899999998888762 367
Q ss_pred ccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEE--EEEec--CCEEEEEecCc-EEEEEeCC-
Q 003171 416 GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTF--GSQIWVGYMNG-IVQVLDLE- 487 (842)
Q Consensus 416 ~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~--sls~d--G~~LasGs~Dg-tIrlWD~~- 487 (842)
.+|+..|.++.|+..|+ +++.|-||+||.||+ .+++.++|+. ..++. |++.| |..+.+|+.|. .|.||+++
T Consensus 389 teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT 467 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT 467 (893)
T ss_pred ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec
Confidence 88999999999999988 789999999999999 7899999986 34444 67766 88888888764 89999987
Q ss_pred CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 488 GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 488 g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
|+++..+.||.++|.+++ ++++.|+|+|+|+|||+||+-.
T Consensus 468 GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 468 GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred CeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence 899999999999999876 6899999999999999999744
No 41
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.92 E-value=2.4e-23 Score=211.96 Aligned_cols=239 Identities=18% Similarity=0.255 Sum_probs=185.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.+.|+|+-+++|.+.|+|+|.||.+.|||.-+. ...+-+.-...+|..+||+|.|+ ++.|+-|+..-|+++
T Consensus 55 ~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt--------nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 55 LNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT--------NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred ccceeeeEecCCcCeEEeeccCCeEEEEEcccc--------cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 779999999999999999999999999998886 34444455578999999999999 578999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEee
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~ 349 (842)
.+....... .+ . ..+.+| .+.+.+..+-+++..|-+++|.|..+||+++|+.+..|.
T Consensus 127 s~~d~~g~~-----~v-----~---r~l~gH----------tgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 127 STRDAEGNV-----RV-----S---RELAGH----------TGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred ccccccccc-----ee-----e---eeecCc----------cceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEec
Confidence 653211000 00 0 012223 334555556555666666668999999999999877776
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
+|. ..|.+|.++|
T Consensus 184 GH~-------------------------------------------------------------------gDV~slsl~p 196 (343)
T KOG0286|consen 184 GHT-------------------------------------------------------------------GDVMSLSLSP 196 (343)
T ss_pred CCc-------------------------------------------------------------------ccEEEEecCC
Confidence 543 2344556666
Q ss_pred -CCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Ccccccccc--cccCE
Q 003171 430 -DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA--HSSPV 501 (842)
Q Consensus 430 -dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g--H~~~V 501 (842)
+++ ++||+.|++.+|||+ .+.|.++|.+|...|+++. |+|.-+++|+.|++.|+||++ .+.+..+.. -..+|
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 555 799999999999999 8999999999999999986 589999999999999999997 555665542 23468
Q ss_pred EEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 502 IKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 502 ~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+++++ .|++|+.|..|.++.+||.-.
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk 304 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLK 304 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccc
Confidence 88885 799999999999999999543
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.2e-23 Score=231.49 Aligned_cols=269 Identities=17% Similarity=0.221 Sum_probs=200.4
Q ss_pred CCCCCCceeecCCCCCccccCceeEEEEecCCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec
Q 003171 112 HPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG 190 (842)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 190 (842)
+++|..++++ ||. +--+.++ ..|.|.+||.++..-... | .+.
T Consensus 12 rSdRVKsVd~--HPt---------------ePw~la~LynG~V~IWnyetqtmVks-----------------f--eV~- 54 (794)
T KOG0276|consen 12 RSDRVKSVDF--HPT---------------EPWILAALYNGDVQIWNYETQTMVKS-----------------F--EVS- 54 (794)
T ss_pred cCCceeeeec--CCC---------------CceEEEeeecCeeEEEecccceeeee-----------------e--eec-
Confidence 7788888888 551 1111222 367999999976543321 1 122
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.-||.+..|-+.-+++++||.|..||+++.+++ +.+.+|.+|.+.|++|+.+|.-- ++|+|+|-+||+||+
T Consensus 55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~--------ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w 126 (794)
T KOG0276|consen 55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG--------EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW 126 (794)
T ss_pred ccchhhheeeeccceEEEecCCceEEEEecccc--------eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeec
Confidence 558888888888899999999999999999997 78899999999999999999754 789999999999999
Q ss_pred CCc-cceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-CCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 270 EAI-EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 270 ~t~-~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
+.. .+..++. || +.-|..+++.|. ..+.+|++ |+|||+|.+-+..+..
T Consensus 127 e~~wa~~qtfe-------------------GH----------~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf 177 (794)
T KOG0276|consen 127 ENEWACEQTFE-------------------GH----------EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF 177 (794)
T ss_pred cCceeeeeEEc-------------------Cc----------ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce
Confidence 762 1222222 22 224667777774 45778877 8999999986655544
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
+|.+| .+.|.++.
T Consensus 178 Tl~gH-------------------------------------------------------------------ekGVN~Vd 190 (794)
T KOG0276|consen 178 TLEGH-------------------------------------------------------------------EKGVNCVD 190 (794)
T ss_pred eeecc-------------------------------------------------------------------ccCcceEE
Confidence 44433 22233333
Q ss_pred ECCCC---cEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCC--EEEEEecCcEEEEEeCCC-ccccccccccc
Q 003171 427 TSIDG---MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGS--QIWVGYMNGIVQVLDLEG-NLLGGWVAHSS 499 (842)
Q Consensus 427 ~s~dg---~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~--~LasGs~DgtIrlWD~~g-~~i~~l~gH~~ 499 (842)
+=+.| .|+||+.|.+||+||- +..|++++.||.+.|.++++..+ .|++||.|||+|||+..+ ++..++.---+
T Consensus 191 yy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle 270 (794)
T KOG0276|consen 191 YYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE 270 (794)
T ss_pred eccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc
Confidence 33333 6999999999999999 78999999999999999988764 899999999999999764 56677777778
Q ss_pred CEEEEE--eCCCEEEEEcCCCCee
Q 003171 500 PVIKMA--VGAGYIFTLANHGGIR 521 (842)
Q Consensus 500 ~V~sla--~dg~~l~S~S~DgtIr 521 (842)
.||+|+ .+...++.|...|.|-
T Consensus 271 RvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 271 RVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred eEEEEeecCCCCeEEEeccCCcEE
Confidence 999998 4555666666666553
No 43
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-22 Score=205.12 Aligned_cols=260 Identities=16% Similarity=0.193 Sum_probs=196.7
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeee---eecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKES---VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL 224 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~ 224 (842)
|+|..||+|+...+....| +.. .| ...|.++|++|.|++|++||.|.++-||.-..+
T Consensus 34 g~Dk~vriw~~~~~~s~~c------------------k~vld~~h-krsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~- 93 (312)
T KOG0645|consen 34 GTDKAVRIWSTSSGDSWTC------------------KTVLDDGH-KRSVRSVAWSPHGRYLASASFDATVVIWKKEDG- 93 (312)
T ss_pred cCCceEEEEecCCCCcEEE------------------EEeccccc-hheeeeeeecCCCcEEEEeeccceEEEeecCCC-
Confidence 6799999999875332223 111 23 779999999999999999999999999987654
Q ss_pred cCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceec
Q 003171 225 LDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (842)
Q Consensus 225 ~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~ 303 (842)
.|++..++.||.+.|.+++||++|. |+|+|.|+.|-||..+.... + .+.+ + |..|
T Consensus 94 -----efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-f------ec~a-V--------L~~H--- 149 (312)
T KOG0645|consen 94 -----EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-F------ECIA-V--------LQEH--- 149 (312)
T ss_pred -----ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-E------EEEe-e--------eccc---
Confidence 4788999999999999999999998 79999999999999863210 1 0111 1 1122
Q ss_pred cceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCC
Q 003171 304 NGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (842)
Q Consensus 304 ~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (842)
+.+|+.+...|....|+|++ |.||++|+-..+ ..++ -
T Consensus 150 -------tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d---------ddW~-----------------------c--- 187 (312)
T KOG0645|consen 150 -------TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD---------DDWE-----------------------C--- 187 (312)
T ss_pred -------cccccEEEEcCCcceeEEeccCCeEEEEeecCC---------CCee-----------------------E---
Confidence 56899999999889999999 579999974311 1110 0
Q ss_pred CccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC-cEEEEeCCCeEEEEcCC-CCeeeeeecCCc
Q 003171 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPN-GNRLQDFQYLPF 460 (842)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~ 460 (842)
..++.+|...|.+++|.+.| +|++++.|++|++|-.- +-. .-|+.
T Consensus 188 -----------------------------~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr 234 (312)
T KOG0645|consen 188 -----------------------------VQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSR 234 (312)
T ss_pred -----------------------------EEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhccc
Confidence 00134555677889999988 59999999999999852 210 13677
Q ss_pred cEEEEEecCCEEEEEecCcEEEEEeCCC-------cc-cccccccccCEEEEEeC---CCEEEEEcCCCCeeecccc
Q 003171 461 AVQCLCTFGSQIWVGYMNGIVQVLDLEG-------NL-LGGWVAHSSPVIKMAVG---AGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 461 ~V~sls~dG~~LasGs~DgtIrlWD~~g-------~~-i~~l~gH~~~V~sla~d---g~~l~S~S~DgtIrvWd~~ 526 (842)
+++.++-....|++|+.|+.|+|+--.. ++ ...-.+|...|++|.++ ++.|+|+|.||.|++|.+.
T Consensus 235 ~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 235 ALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 8888877766899999999999996431 22 34567899999999964 4689999999999999864
No 44
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=2.5e-23 Score=233.11 Aligned_cols=277 Identities=16% Similarity=0.226 Sum_probs=213.1
Q ss_pred eeEEEEecCCEEE--EecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 134 FLRTIVCTEEQLW--AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 134 ~~~~l~~~~~~l~--~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
-+|++....+.+. ++..+.+++||.++..+... +. .+-+.|..|-|.+++|++|..
T Consensus 375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRT---------------------i~-~~y~l~~~Fvpgd~~Iv~G~k 432 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRT---------------------IT-CGYILASKFVPGDRYIVLGTK 432 (888)
T ss_pred heeEEEeecCceeeeecCCCcEEEEEccCcceeEE---------------------ec-cccEEEEEecCCCceEEEecc
Confidence 4778877766433 35678999999988665431 22 557899999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
.|.+.++|+... ..+-+.++|.++|++|+.+||++ ++|||.|.|||.||..-.. ......... +.+
T Consensus 433 ~Gel~vfdlaS~--------~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~---~~~gt~~k~--lsl 499 (888)
T KOG0306|consen 433 NGELQVFDLASA--------SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVV---SVPGTQKKV--LSL 499 (888)
T ss_pred CCceEEEEeehh--------hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEe---ccCccccee--eee
Confidence 999999999986 44556789999999999999998 9999999999999974210 000000000 100
Q ss_pred eec-eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc
Q 003171 291 ERS-YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 291 ~~s-~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
... .+. ...++.|+.++|++..++.+- +.|++++-+.|=++--.
T Consensus 500 ~~~rtLe-------------l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfls--------------------- 545 (888)
T KOG0306|consen 500 KHTRTLE-------------LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLS--------------------- 545 (888)
T ss_pred ccceEEe-------------ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeee---------------------
Confidence 000 001 156788999998887776554 66787776654332111
Q ss_pred ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC
Q 003171 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP 447 (842)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~ 447 (842)
+-+|.-+|.++-+|||+. ++|||.|++||+|-+
T Consensus 546 ----------------------------------------------LYGHkLPV~smDIS~DSklivTgSADKnVKiWGL 579 (888)
T KOG0306|consen 546 ----------------------------------------------LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL 579 (888)
T ss_pred ----------------------------------------------ecccccceeEEeccCCcCeEEeccCCCceEEecc
Confidence 234555677888999998 789999999999999
Q ss_pred -CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCee
Q 003171 448 -NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIR 521 (842)
Q Consensus 448 -~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIr 521 (842)
-|.|-+.|-+|.+.|+++.+ ....+++++.|+.|+-||.+ =.+++++.+|...|++++ ++|++++|+|.|.+||
T Consensus 580 dFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIR 659 (888)
T KOG0306|consen 580 DFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIR 659 (888)
T ss_pred ccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeE
Confidence 59999999999999999965 44589999999999999987 468999999999999987 6899999999999999
Q ss_pred eccc
Q 003171 522 GWNV 525 (842)
Q Consensus 522 vWd~ 525 (842)
+|.-
T Consensus 660 lwE~ 663 (888)
T KOG0306|consen 660 LWER 663 (888)
T ss_pred eeec
Confidence 9984
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1e-23 Score=222.52 Aligned_cols=272 Identities=14% Similarity=0.143 Sum_probs=192.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
+..|.-+.||++|++|||||+|.|..+|.+... ..++...++.||..+|.-+.||||.+ |++|+.|..+++||+
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d-----~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD-----VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCceEEEEEEecC-----cceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence 789999999999999999999999999998763 34677889999999999999999987 899999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.++.....+.. ++ ...+.+.+=.+++..+.+|+ |++|.-||+.. ..+...
T Consensus 299 ~tgd~~~~y~~------------------~~----------~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W 349 (519)
T KOG0293|consen 299 DTGDLRHLYPS------------------GL----------GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNW 349 (519)
T ss_pred Ccchhhhhccc------------------Cc----------CCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcc
Confidence 88764322211 00 01223334445666666666 67899999853 333332
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCc-EEEEee----cCccccCCCceE
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAA----KGGFGDDNRRTE 423 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~-v~~v~~----~g~~~~~~~~v~ 423 (842)
.+-.. .++.. ++..+++...++-..+. ++.++. .-.+......+.
T Consensus 350 ~gvr~------------------~~v~d------------lait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~it 399 (519)
T KOG0293|consen 350 EGVRD------------------PKVHD------------LAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPIT 399 (519)
T ss_pred ccccc------------------ceeEE------------EEEcCCCcEEEEEecccceeeechhhhhhhccccccCcee
Confidence 21100 00000 11111111111111111 111111 111344567889
Q ss_pred EEEECCCCcEE-EEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--Ee---cCCEEEEEecCcEEEEEeCC-Cccccccc
Q 003171 424 ALTTSIDGMIW-TGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CT---FGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 424 al~~s~dg~l~-Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~---dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (842)
++.+|.||+++ +-=.+..|.+||+ +.+.++.+.||...-.-| ++ +.++|+|||+|+.|+||+.. |+++.++.
T Consensus 400 s~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls 479 (519)
T KOG0293|consen 400 SFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS 479 (519)
T ss_pred EEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec
Confidence 99999999964 4447889999999 677888999998653333 23 44699999999999999986 99999999
Q ss_pred ccccCEEEEEe---CCCEEEEEcCCCCeeecccc
Q 003171 496 AHSSPVIKMAV---GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 496 gH~~~V~sla~---dg~~l~S~S~DgtIrvWd~~ 526 (842)
||+..|++|++ ++.++||||.|||||||-..
T Consensus 480 GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 480 GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999995 66789999999999999854
No 46
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.1e-24 Score=237.48 Aligned_cols=246 Identities=21% Similarity=0.348 Sum_probs=188.8
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcc
Q 003171 196 CMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 196 ~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~ 273 (842)
++..|+ .+++|+||+.||.||+|+...... ...-..+.+++.|+.+|+.++...+|+ |+|+|.|-|||+|+.....
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~--~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN--EPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccC--CcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc
Confidence 445554 456799999999999999876420 001124677899999999999999996 9999999999999986532
Q ss_pred ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEE-cCCCCEEEEeC-CCcEEEEEccCCcE--EEEee
Q 003171 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAG-FLSFALWDARTREL--LKVFN 349 (842)
Q Consensus 274 ~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las-~~~~~~v~s~s-~~tI~lWD~~tg~~--l~~l~ 349 (842)
.++. . .++.| ...|+|++. ......|+||+ |+.|.|||+.+|.. +..+.
T Consensus 107 -~~c~-------s---------tir~H----------~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 107 -TFCM-------S---------TIRTH----------KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred -chhH-------h---------hhhcc----------cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc
Confidence 1111 1 12223 567888888 66777888988 78999999998732 11111
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccc-cCCCceEEEEEC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG-DDNRRTEALTTS 428 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~-~~~~~v~al~~s 428 (842)
.+ ... .+. ++...|++++..
T Consensus 160 ---~~-----------------------t~~---------------------------------sl~sG~k~siYSLA~N 180 (735)
T KOG0308|consen 160 ---NV-----------------------TVN---------------------------------SLGSGPKDSIYSLAMN 180 (735)
T ss_pred ---cc-----------------------ccc---------------------------------cCCCCCccceeeeecC
Confidence 00 000 011 334556788888
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEE
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s 503 (842)
+.|. +++|+..+.|++||. +++.+..++||+.-|.++- .||+++++||+||+|+|||+. .+|+.++..|.+.||+
T Consensus 181 ~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWa 260 (735)
T KOG0308|consen 181 QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWA 260 (735)
T ss_pred CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEE
Confidence 8887 688999999999999 7889999999999999984 589999999999999999998 6799999999999999
Q ss_pred EEe--CCCEEEEEcCCCCeeeccccCCC
Q 003171 504 MAV--GAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 504 la~--dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
+.. +=+.+++|+.|+.|..=|+++|.
T Consensus 261 L~~~~sf~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred EeeCCCcceEEecCCCCcEEecccCCch
Confidence 985 45679999999999999988863
No 47
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.91 E-value=1.8e-22 Score=210.96 Aligned_cols=299 Identities=15% Similarity=0.135 Sum_probs=188.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
+.+|+|++.+|+.++++||+.|...-+|+..+| .....+.||+..|+++.||.||. |+||..+|.|+||..
T Consensus 64 ~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--------e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 64 TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--------EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred CCceEEEEeCCCCceEEecCCCceEEEEEccCC--------cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 889999999999999999999999999999998 56788999999999999999998 689999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.++.....+..+. .++..+.-.+.+..++.|+ |+.+=.|.+.++...+++
T Consensus 136 stg~~~~~~~~e~-----------------------------~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~ 186 (399)
T KOG0296|consen 136 STGGEQWKLDQEV-----------------------------EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM 186 (399)
T ss_pred ccCceEEEeeccc-----------------------------CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe
Confidence 8865544442111 1122222222222222222 223334444443334444
Q ss_pred ecCCceEeeeecccCCCccc----ccceEEEEEecCCCCc--------cceeeeEeecCcceEEecCCcEEEEee--cCc
Q 003171 349 NIDGQIENRVDMSLLPDFAM----EDEFKTKIVTSSKKDK--------AQSSFGFFQRSRNAIMGAADAVRRVAA--KGG 414 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~----~~~~~~~~~s~~~~~~--------~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~ 414 (842)
.+|.+..+.-.+.+.....+ +..+++|..+...+.. ....+.+...+..++.|..++...+-. .|.
T Consensus 187 ~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 187 SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK 266 (399)
T ss_pred cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccce
Confidence 44443333223322222111 1111111111000000 000111111122223333333222211 110
Q ss_pred ------------cccCCCceEEEE---ECCCCc-EEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEecC-CEEEEEec
Q 003171 415 ------------FGDDNRRTEALT---TSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFG-SQIWVGYM 477 (842)
Q Consensus 415 ------------~~~~~~~v~al~---~s~dg~-l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~dG-~~LasGs~ 477 (842)
..++...++++. ++..=. .+.|+-||+|-|||.....++..-.|...|..+.+.+ .+|++++.
T Consensus 267 Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~ 346 (399)
T KOG0296|consen 267 VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACA 346 (399)
T ss_pred EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeecc
Confidence 011222333333 333323 4789999999999997666666667999999998877 69999999
Q ss_pred CcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeecccc
Q 003171 478 NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~ 526 (842)
+|.|++||.+ |++..+++||+..|.+++ ++.+.++|+|.|++.+|+++.
T Consensus 347 ~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 347 NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999986 999999999999999977 688999999999999999753
No 48
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=4.7e-22 Score=244.88 Aligned_cols=242 Identities=16% Similarity=0.176 Sum_probs=181.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC-CC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd 268 (842)
.+.|.+++|+|+|++|+||+.|++|++|+......+..........+.+ ...|.+++|++. +. |+||+.||+|+|||
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 7789999999999999999999999999976421000000011233333 468999999885 44 89999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
+.+++....+ .+| ...|.++++.+ ++..+++++ |++|++||+.++.++.
T Consensus 562 ~~~~~~~~~~-------------------~~H----------~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 562 VARSQLVTEM-------------------KEH----------EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred CCCCeEEEEe-------------------cCC----------CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 9764322211 112 44577888875 566788777 6799999999887765
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
++..+. .+.++.
T Consensus 613 ~~~~~~--------------------------------------------------------------------~v~~v~ 624 (793)
T PLN00181 613 TIKTKA--------------------------------------------------------------------NICCVQ 624 (793)
T ss_pred EEecCC--------------------------------------------------------------------CeEEEE
Confidence 543211 122344
Q ss_pred E-CCCCc-EEEEeCCCeEEEEcC-CCC-eeeeeecCCccEEEEEe-cCCEEEEEecCcEEEEEeCC-------Ccccccc
Q 003171 427 T-SIDGM-IWTGGANGLLLQWDP-NGN-RLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-------GNLLGGW 494 (842)
Q Consensus 427 ~-s~dg~-l~Sgs~DgtIrlWD~-~g~-~l~~l~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~-------g~~i~~l 494 (842)
+ +++|. +++|+.||+|++||+ +++ .+.++.+|...|.++.+ ++.+|++|+.|++|+|||+. ++++.++
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~ 704 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF 704 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEE
Confidence 4 34555 899999999999999 554 57788899999999976 78899999999999999985 2568899
Q ss_pred cccccCEEEEE--eCCCEEEEEcCCCCeeeccccCCCC
Q 003171 495 VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 495 ~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
.+|...|.+++ +++.++++|+.|++|++|+...+.+
T Consensus 705 ~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~ 742 (793)
T PLN00181 705 MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP 742 (793)
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc
Confidence 99999998876 4788999999999999999765544
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.7e-23 Score=226.08 Aligned_cols=239 Identities=13% Similarity=0.184 Sum_probs=199.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
+..|.|+.+.|.--++..+-+.|.+.||+.++. ....++.--.-||++..|-+--+ +++||+|..|||++.
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetq--------tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ--------TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccc--------eeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 567999999999999999999999999999986 56677776678999999988665 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCc-EEEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRE-LLKV 347 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~-~l~~ 347 (842)
.+.++...+.. | +..++++++.|....|.+++| .+||+||-+.+- |.++
T Consensus 85 nt~ekV~~FeA-------------------H----------~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt 135 (794)
T KOG0276|consen 85 NTGEKVKTFEA-------------------H----------SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT 135 (794)
T ss_pred ccceeeEEeec-------------------c----------ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeE
Confidence 98776554432 2 556889999998888888885 699999976431 2222
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
|.+|.+-|..++|
T Consensus 136 -------------------------------------------------------------------feGH~HyVMqv~f 148 (794)
T KOG0276|consen 136 -------------------------------------------------------------------FEGHEHYVMQVAF 148 (794)
T ss_pred -------------------------------------------------------------------EcCcceEEEEEEe
Confidence 5566666777788
Q ss_pred CCCC--cEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe----cCCEEEEEecCcEEEEEeCCC-ccccccccccc
Q 003171 428 SIDG--MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT----FGSQIWVGYMNGIVQVLDLEG-NLLGGWVAHSS 499 (842)
Q Consensus 428 s~dg--~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~----dG~~LasGs~DgtIrlWD~~g-~~i~~l~gH~~ 499 (842)
.|.. +++|+|-|+|||+|.+ ...+..+|++|...|+|+.. |..+|++|+.|.+|+|||-.+ .|++++.||+.
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~ 228 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN 228 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc
Confidence 7753 4899999999999999 77889999999999999965 234999999999999999874 68999999999
Q ss_pred CEEEEEeCCC--EEEEEcCCCCeeeccccCCCCCcc
Q 003171 500 PVIKMAVGAG--YIFTLANHGGIRGWNVTSPGPLDS 533 (842)
Q Consensus 500 ~V~sla~dg~--~l~S~S~DgtIrvWd~~~~~~~d~ 533 (842)
.|..+.+.+. .++|||.|||+|+|+-.+|...+.
T Consensus 229 Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 229 NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred cceEEEecCCCcEEEEecCCccEEEecCcceehhhh
Confidence 9999998776 588999999999999887765443
No 50
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.91 E-value=5.7e-24 Score=224.63 Aligned_cols=236 Identities=21% Similarity=0.310 Sum_probs=189.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (842)
-+|..|.+.|+|+.|.+|++-|.+-+|+..+- .-...+++|..+|++|.++++|. ++||+.||.||+|+..
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f--------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn 168 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF--------NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN 168 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCcee--------eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc
Confidence 47888999999999999999999999987541 22334689999999999999998 8899999999999974
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEee
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFN 349 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~ 349 (842)
-. ...... +| ....|+++++++.+.++.++++ ++|+|||..-.+...+|.
T Consensus 169 mn-nVk~~~-------------------ah---------h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~ 219 (464)
T KOG0284|consen 169 MN-NVKIIQ-------------------AH---------HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR 219 (464)
T ss_pred hh-hhHHhh-------------------Hh---------hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec
Confidence 21 000000 01 1356899999999999998885 789999987665544444
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
+|+ ..|.++.+.|
T Consensus 220 GHg-------------------------------------------------------------------wdVksvdWHP 232 (464)
T KOG0284|consen 220 GHG-------------------------------------------------------------------WDVKSVDWHP 232 (464)
T ss_pred cCC-------------------------------------------------------------------CCcceeccCC
Confidence 443 2233344444
Q ss_pred C-CcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEE
Q 003171 430 D-GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKM 504 (842)
Q Consensus 430 d-g~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sl 504 (842)
. |.|+|||.|..||+||. +|+|+.++.+|.+.|+.+.+ +|.+|+++|.|..++++|+. -+.+.+++||...|+++
T Consensus 233 ~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~ 312 (464)
T KOG0284|consen 233 TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSL 312 (464)
T ss_pred ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheee
Confidence 3 45899999999999999 89999999999999999865 67899999999999999998 56799999999999999
Q ss_pred Ee---CCCEEEEEcCCCCeeeccccCCCCC
Q 003171 505 AV---GAGYIFTLANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 505 a~---dg~~l~S~S~DgtIrvWd~~~~~~~ 531 (842)
.+ ..+.+.||+.||.|..|.+..-.|+
T Consensus 313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred ccccccccceeeccCCCceEEEeccccccc
Confidence 85 5678889999999999998644443
No 51
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.2e-22 Score=226.63 Aligned_cols=264 Identities=19% Similarity=0.255 Sum_probs=195.0
Q ss_pred EEEEecCCE-EEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEE-EEEc-CCCCEEEEEeC
Q 003171 136 RTIVCTEEQ-LWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMC-MVGD-EASGVVWSGHR 211 (842)
Q Consensus 136 ~~l~~~~~~-l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~-la~d-pdg~~LaSGs~ 211 (842)
|+++..... +.. |.|+++|||+-....-. +..+|.. + .+.|.+ +++. .++..|++|+.
T Consensus 18 r~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l---------------~~~~~~~--~-~g~i~~~i~y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 18 RAVAVTDGVCIISGSRDGTVKVWAKKGKQYL---------------ETHAFEG--P-KGFIANSICYAESDKGRLVVGGM 79 (745)
T ss_pred heeEecCCeEEeecCCCCceeeeeccCcccc---------------cceeccc--C-cceeeccceeccccCcceEeecc
Confidence 455544443 333 45999999997432111 1112211 1 333433 4444 36678999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEe
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~ 291 (842)
|++|.+|...+. .....|+||+..|.|+....++.|+|||+|.|+|||..... ..++.
T Consensus 80 D~~i~v~~~~~~--------~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l--~~~l~------------ 137 (745)
T KOG0301|consen 80 DTTIIVFKLSQA--------EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGEL--VYSLQ------------ 137 (745)
T ss_pred cceEEEEecCCC--------CchhhhhccccceeeeecCCcCceEecccccceEEecchhh--hcccC------------
Confidence 999999999886 67889999999999999988899999999999999987432 11111
Q ss_pred eceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccccc
Q 003171 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (842)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (842)
+| ...|-.+++-+.+ ++.+|+ |++||+|.. ++++++|.+
T Consensus 138 -------gH----------~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~g-------------------- 177 (745)
T KOG0301|consen 138 -------GH----------TASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSG-------------------- 177 (745)
T ss_pred -------Cc----------chheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhcc--------------------
Confidence 12 2233445555555 455554 789999976 555555443
Q ss_pred ceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcCCCC
Q 003171 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGN 450 (842)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~~g~ 450 (842)
|...|+.|++-+++.++|++.||.||+|+++|+
T Consensus 178 -----------------------------------------------HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge 210 (745)
T KOG0301|consen 178 -----------------------------------------------HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE 210 (745)
T ss_pred -----------------------------------------------chhheeeeEEecCCCeEeecCCceEEEEeccCc
Confidence 444566677778888999999999999999999
Q ss_pred eeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCcccccccccccCEEEEE-eCCCEEEEEcCCCCeeeccccC
Q 003171 451 RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA-VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 451 ~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla-~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
++.++.+|++-|+|++. ++..|+++++|+++|+|+.. .|.+.+...+-.||++. ....-++.|+.||.||||....
T Consensus 211 ~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 211 VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 99999999999999973 67799999999999999976 77777777777899987 4666788999999999998653
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.90 E-value=9.8e-24 Score=227.25 Aligned_cols=266 Identities=17% Similarity=0.199 Sum_probs=202.3
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
+-.|.|+.|.| .+.+|+||+.|+.|+||++-... +++++++||+.+|.+++|+.+|. ++|+|.|++||+||
T Consensus 214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-------RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD 286 (503)
T ss_pred ccccchhhhccceeeEEEecCCCceEEEEEEecCc-------ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence 77899999999 89999999999999999987632 78899999999999999999997 89999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCC-CEEEEeC-CCcEEEEEccCCcEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
++|+....++... .-..|+-+.+++ ..+.+|+ ++.|+.||+++|++++
T Consensus 287 tETG~~~~~f~~~------------------------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 287 TETGQVLSRFHLD------------------------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred cccceEEEEEecC------------------------------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH
Confidence 9998765554321 112344555555 3444444 6789999999999765
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCc-----cc--cCC
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG-----FG--DDN 419 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~-----~~--~~~ 419 (842)
.+..|-+. +.++.|.+.++.-+..+.+..+++|.-+. +. ...
T Consensus 337 eYd~hLg~-------------------------------i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~ 385 (503)
T KOG0282|consen 337 EYDRHLGA-------------------------------ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEM 385 (503)
T ss_pred HHHhhhhh-------------------------------eeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhh
Confidence 54333221 12345555555556666666666665211 11 123
Q ss_pred CceEEEEECCCCc-EEEEeCCCeEEEEcCC----CCeeeeeecCCccEEE----EEecCCEEEEEecCcEEEEEeCC-Cc
Q 003171 420 RRTEALTTSIDGM-IWTGGANGLLLQWDPN----GNRLQDFQYLPFAVQC----LCTFGSQIWVGYMNGIVQVLDLE-GN 489 (842)
Q Consensus 420 ~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~----g~~l~~l~~H~~~V~s----ls~dG~~LasGs~DgtIrlWD~~-g~ 489 (842)
....++...|++. ++.-+.|+-|.++.+. -+.-+.|+||..+=.+ +++||++|++|+.||.+.+||-+ .+
T Consensus 386 hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 386 HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK 465 (503)
T ss_pred ccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh
Confidence 4567788888887 6777889989999873 2455678888755333 46799999999999999999987 68
Q ss_pred ccccccccccCEEEEEeC---CCEEEEEcCCCCeeecc
Q 003171 490 LLGGWVAHSSPVIKMAVG---AGYIFTLANHGGIRGWN 524 (842)
Q Consensus 490 ~i~~l~gH~~~V~sla~d---g~~l~S~S~DgtIrvWd 524 (842)
++..|++|+.++..+.+. .+.++|+|.||.|++|+
T Consensus 466 l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 466 LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999864 46799999999999996
No 53
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.2e-23 Score=204.59 Aligned_cols=143 Identities=35% Similarity=0.520 Sum_probs=125.1
Q ss_pred ceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcchHHH-HHH
Q 003171 632 TFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR-RNA 710 (842)
Q Consensus 632 ~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~-Rn~ 710 (842)
.|+.+.+.+|+++.+.+|++.++..++.++++.++++|+++.+||||+|+++++++++.+|||+|||+||.++..+ ||+
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~~~r~~ 81 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVYERRNE 81 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhHHHhhc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999998888 999
Q ss_pred HHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCcccEEEEeccceeeecCCChHHHHHHhhhc
Q 003171 711 DFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQR 790 (842)
Q Consensus 711 ~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~ 790 (842)
||.+|++.+.|...... ..+......+|+|||+||||||+...++.++..++.++
T Consensus 82 d~~~i~~~~~~~~~~~~-------------------------~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~ 136 (145)
T KOG0565|consen 82 DYQEILNGLRFPSVSPA-------------------------SEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVK 136 (145)
T ss_pred cHHHHHhhccccccCcc-------------------------cccccccccccEEEEecceeeeecCcccccchhhhhhc
Confidence 99999999998753321 00000011289999999999999984488889999999
Q ss_pred chHHHHHhh
Q 003171 791 CFDWLRERD 799 (842)
Q Consensus 791 ~~~~L~~~D 799 (842)
.++.|+++|
T Consensus 137 ~~~~l~~~d 145 (145)
T KOG0565|consen 137 SRDGLLEKD 145 (145)
T ss_pred chhhhhccC
Confidence 998888876
No 54
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.4e-22 Score=207.91 Aligned_cols=270 Identities=18% Similarity=0.222 Sum_probs=202.4
Q ss_pred CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 142 EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 142 ~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
+.-|..| -||-|-|||.-++... +.-.-.+.-.-..+ ..+|+|+.|+.|..+||||+.||.|++|.+
T Consensus 225 gqyLvsgSvDGFiEVWny~~GKlr-----------KDLkYQAqd~fMMm-d~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 225 GQYLVSGSVDGFIEVWNYTTGKLR-----------KDLKYQAQDNFMMM-DDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred CceEeeccccceeeeehhccchhh-----------hhhhhhhhcceeec-ccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 4444444 4999999998664321 11010111011234 789999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEec-ccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecc
Q 003171 221 NARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~ 298 (842)
.+| .+++.|. +|+..|+|+.||.|+. ++|+|.|.|+|+--+.+++....+ |
T Consensus 293 ~tG--------~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf-------------------r 345 (508)
T KOG0275|consen 293 ETG--------QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF-------------------R 345 (508)
T ss_pred ecc--------hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh-------------------c
Confidence 999 6777775 9999999999999986 899999999999998776543322 3
Q ss_pred cceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEE
Q 003171 299 SHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (842)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (842)
|| ++.+.-..+.++|..|.+++ |++|++|+.+|.+|+.+|.+.+..
T Consensus 346 GH----------sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d----------------------- 392 (508)
T KOG0275|consen 346 GH----------SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD----------------------- 392 (508)
T ss_pred Cc----------cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc-----------------------
Confidence 33 34455566677777777766 789999999999999888653310
Q ss_pred ecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC-CcEEEEeCCCeEEEEcCCCCeeeeee
Q 003171 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-GMIWTGGANGLLLQWDPNGNRLQDFQ 456 (842)
Q Consensus 378 s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d-g~l~Sgs~DgtIrlWD~~g~~l~~l~ 456 (842)
..+.++-. +..+ ..++.+-..++|.+-++.|+.++.|.
T Consensus 393 ------~~vnsv~~-----------------------------------~PKnpeh~iVCNrsntv~imn~qGQvVrsfs 431 (508)
T KOG0275|consen 393 ------YPVNSVIL-----------------------------------LPKNPEHFIVCNRSNTVYIMNMQGQVVRSFS 431 (508)
T ss_pred ------ccceeEEE-----------------------------------cCCCCceEEEEcCCCeEEEEeccceEEeeec
Confidence 00000000 1111 13667777889999999999999886
Q ss_pred c----CCccEEE-EEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeecc
Q 003171 457 Y----LPFAVQC-LCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 457 ~----H~~~V~s-ls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd 524 (842)
. ...-|.| +++-|.+++..+.|+.++.+.+. |++-+++.-|...|..++ +..+.++|=|.||.+++|.
T Consensus 432 SGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 432 SGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 3 2234665 47899999999999999999975 999999999999999998 4667789999999999995
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9.9e-21 Score=191.34 Aligned_cols=264 Identities=17% Similarity=0.188 Sum_probs=193.4
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-cccCCcEEEEEEecCCC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (842)
.+.|..++++|. |.+|||++.|..||+|+...+ +.+.+...+ .+|+..|+++|++|.|+ |++||.|.|+-||
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-----~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-----DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIW 88 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCC-----CcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEe
Confidence 668999999998 789999999999999998853 223444444 58999999999999999 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCc---
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE--- 343 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~--- 343 (842)
.-...+.. +.. .+.|| .++|++++.+.+|..|++++ |+.+=||.+..+.
T Consensus 89 ~k~~~efe--------cv~---------~lEGH----------EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 89 KKEDGEFE--------CVA---------TLEGH----------ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred ecCCCcee--------EEe---------eeecc----------ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence 86543211 111 12344 67899999999999999887 6789999875332
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceE
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (842)
++.+|+ +|.+-|.
T Consensus 142 c~aVL~-------------------------------------------------------------------~HtqDVK 154 (312)
T KOG0645|consen 142 CIAVLQ-------------------------------------------------------------------EHTQDVK 154 (312)
T ss_pred EEeeec-------------------------------------------------------------------ccccccc
Confidence 223333 3334444
Q ss_pred EEEECCC-CcEEEEeCCCeEEEEcCC-C---CeeeeeecCCccEEEEEec--CCEEEEEecCcEEEEEeCCCcccccccc
Q 003171 424 ALTTSID-GMIWTGGANGLLLQWDPN-G---NRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGNLLGGWVA 496 (842)
Q Consensus 424 al~~s~d-g~l~Sgs~DgtIrlWD~~-g---~~l~~l~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g~~i~~l~g 496 (842)
.+.+.|- +.|+|+|-|+|||+|+-. + +|++++.+|.+.|.+++++ |.+|++++.|++|+||-.-. ..-.-
T Consensus 155 ~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~---~~~~~ 231 (312)
T KOG0645|consen 155 HVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT---DLSGM 231 (312)
T ss_pred EEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc---Ccchh
Confidence 4455553 458999999999999873 4 6999999999999999874 88999999999999998531 11124
Q ss_pred cccCEEEEEeCCCEEEEEcCCCCeeeccccCCCCCcchhhhhhcccccccccccceeEEEEEEEeC
Q 003171 497 HSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVG 562 (842)
Q Consensus 497 H~~~V~sla~dg~~l~S~S~DgtIrvWd~~~~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~ 562 (842)
|+..++.++++...|+|++.|+.|+++.-.. .|-+... +.+.+++.. .+..|-..-||-+
T Consensus 232 ~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~-~~d~p~~-~l~~~~~~a----He~dVNsV~w~p~ 291 (312)
T KOG0645|consen 232 HSRALYDVPWDNGVIASGGGDDAIRLFKESD-SPDEPSW-NLLAKKEGA----HEVDVNSVQWNPK 291 (312)
T ss_pred cccceEeeeecccceEeccCCCEEEEEEecC-CCCCchH-HHHHhhhcc----cccccceEEEcCC
Confidence 7889999999877899999999999997442 2222222 122222221 2224677788873
No 56
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.6e-21 Score=191.79 Aligned_cols=266 Identities=17% Similarity=0.225 Sum_probs=202.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.++.++-||++..+++.|.+||+|+.-.| .++.+..||...|..++.+.|.. ++||+.|+.|.+||+
T Consensus 17 qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 17 QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ccceEEEEEccCCCEEEEcCCCceEEeeccccc--------ceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 779999999999999999999999999999887 68999999999999999998875 999999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCc--EEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE--LLK 346 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~--~l~ 346 (842)
++++..-+ +++| ..+|+.+.+......|+|++ |.++++||-++.. +++
T Consensus 89 ~TGkv~Rr-------------------~rgH----------~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 89 NTGKVDRR-------------------FRGH----------LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred ccCeeeee-------------------cccc----------cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc
Confidence 88753322 2344 34577788877777888888 5799999998753 333
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cCccccC--CCce
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGGFGDD--NRRT 422 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~~~~~--~~~v 422 (842)
+|..... . +.++... ...++.|+.+|..|.-. +|++..+ ...|
T Consensus 140 ildea~D-----------------~--------------V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~pi 186 (307)
T KOG0316|consen 140 ILDEAKD-----------------G--------------VSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPI 186 (307)
T ss_pred hhhhhcC-----------------c--------------eeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCCcc
Confidence 3311000 0 0001111 12346778888766654 5655443 4688
Q ss_pred EEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEE----EEecCCEEEEEecCcEEEEEeCC-Cccccccc
Q 003171 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQC----LCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~s----ls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (842)
+++.||+||+ ++.++.|++|||-|- +|+.++.++||.+.=.. +.....++++||+||.|.+||+. +.++..+.
T Consensus 187 t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 187 TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec
Confidence 9999999999 678899999999999 79999999999986543 34456799999999999999986 78888898
Q ss_pred ccccC-EEEEEeCCCE--EEEEcCCCCeeeccccC
Q 003171 496 AHSSP-VIKMAVGAGY--IFTLANHGGIRGWNVTS 527 (842)
Q Consensus 496 gH~~~-V~sla~dg~~--l~S~S~DgtIrvWd~~~ 527 (842)
.|... |.+|+..++. ++++ .++.+..|--..
T Consensus 267 ~~~~v~v~dl~~hp~~~~f~~A-~~~~~~~~~~~~ 300 (307)
T KOG0316|consen 267 VVSTVIVTDLSCHPTMDDFITA-TGHGDLFWYQEN 300 (307)
T ss_pred cCCceeEEeeecccCccceeEe-cCCceeceeehh
Confidence 88887 7888876653 4444 455677776443
No 57
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.89 E-value=6.5e-21 Score=204.76 Aligned_cols=277 Identities=12% Similarity=0.196 Sum_probs=208.0
Q ss_pred ceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
+=+.+|+=. ++.|.. +.||.+|+|+...... ..+ .-| .+||++|.++.+|.+|+||
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~------------------~tl--~~H-kgPI~slKWnk~G~yilS~ 294 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI------------------STL--GQH-KGPIFSLKWNKKGTYILSG 294 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhh------------------hhh--hcc-CCceEEEEEcCCCCEEEec
Confidence 334555533 445554 4689999999753211 111 123 8899999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
+.||++.+||..+| .....+.-|..+-..|.|-.+..+++.+.|+.|+|..+....+..++.
T Consensus 295 ~vD~ttilwd~~~g--------~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~---------- 356 (524)
T KOG0273|consen 295 GVDGTTILWDAHTG--------TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFI---------- 356 (524)
T ss_pred cCCccEEEEeccCc--------eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeee----------
Confidence 99999999999887 556677788888677888888889999999999999985543332222
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
+| ++.|.++-..+.+..+++++| +|++||....+.+...|..|.+.+..+.
T Consensus 357 ---------GH----------~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~--------- 408 (524)
T KOG0273|consen 357 ---------GH----------HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIK--------- 408 (524)
T ss_pred ---------cc----------cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEe---------
Confidence 22 567888888888899999885 7999999887777666666654321111
Q ss_pred ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC-cEEEEeCCCeEEEEcC
Q 003171 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP 447 (842)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~l~Sgs~DgtIrlWD~ 447 (842)
|++.. ....+ +.++ .+++++.|++|++||+
T Consensus 409 --------wsp~g--------------------------------~v~~n---------~~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 409 --------WSPTG--------------------------------PVTSN---------PNMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred --------ecCCC--------------------------------CccCC---------CcCCceEEEeecCCeEEEEEc
Confidence 11110 00000 0122 3788999999999999
Q ss_pred -CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCee
Q 003171 448 -NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIR 521 (842)
Q Consensus 448 -~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIr 521 (842)
.|.++.+|..|..+|+++++ +|+|+|+|+.||.|.+|+.. +++.+..++- +.|..|.+ +|.++..+..|+.++
T Consensus 440 ~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vc 518 (524)
T KOG0273|consen 440 ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVC 518 (524)
T ss_pred cCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCce
Confidence 79999999999999999975 69999999999999999987 7888888764 55888875 788888888999999
Q ss_pred ecccc
Q 003171 522 GWNVT 526 (842)
Q Consensus 522 vWd~~ 526 (842)
+-|++
T Consensus 519 vldlr 523 (524)
T KOG0273|consen 519 VLDLR 523 (524)
T ss_pred EEEec
Confidence 98764
No 58
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=5.5e-22 Score=203.48 Aligned_cols=243 Identities=19% Similarity=0.288 Sum_probs=189.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.+-+-|..|+|||++|+|||.||.|.+|+..+|...-+-..+..-.|.-|..+|.|+.||.|.. |+||+.||.||||.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 5678999999999999999999999999998873100000111112334788999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.++.+.-++.. +| +..+.++.++.++..+.|++ |.+++|--+++|++++.|
T Consensus 293 ~tG~ClRrFdr------------------AH----------tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf 344 (508)
T KOG0275|consen 293 ETGQCLRRFDR------------------AH----------TKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF 344 (508)
T ss_pred ecchHHHHhhh------------------hh----------ccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh
Confidence 88765443321 12 45678888988888888888 579999999999998877
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
.+|... |....|+
T Consensus 345 rGHsSy-------------------------------------------------------------------vn~a~ft 357 (508)
T KOG0275|consen 345 RGHSSY-------------------------------------------------------------------VNEATFT 357 (508)
T ss_pred cCcccc-------------------------------------------------------------------ccceEEc
Confidence 766532 2233466
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeeeeec--CCccEEEEEe---cCCEEEEEecCcEEEEEeCCCccccccccc----
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQY--LPFAVQCLCT---FGSQIWVGYMNGIVQVLDLEGNLLGGWVAH---- 497 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~--H~~~V~sls~---dG~~LasGs~DgtIrlWD~~g~~i~~l~gH---- 497 (842)
+||. ++++|.||+||+|+. +++|+.+|+. ...+|+++-. +..+++++....+|.+-++.|+.++++..-
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREg 437 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREG 437 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccC
Confidence 7776 899999999999999 7999999984 4457888754 456888989999999999999988887532
Q ss_pred ccCEEEE-EeCCCEEEEEcCCCCeeeccccCC
Q 003171 498 SSPVIKM-AVGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 498 ~~~V~sl-a~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
.+.|.++ ++.|.+++..+.|+.+..+.+.+.
T Consensus 438 GdFi~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred CceEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 2456664 589999999999999998887653
No 59
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.88 E-value=2.7e-20 Score=190.57 Aligned_cols=272 Identities=18% Similarity=0.235 Sum_probs=193.6
Q ss_pred eEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 135 LRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 135 ~~~l~~~~~-~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
+.++.++.+ .+++ |.|..|-+|+... .| ++... ..+| .++|+.+.+.+|+..|+|++.
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~g----dc------------eN~~~--lkgH-sgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYG----DC------------ENFWV--LKGH-SGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccc----cc------------cceee--eccc-cceeEeeeeccCCCEEEEecC
Confidence 556666644 5555 6799999999632 12 33222 2355 899999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
|.+++.||+++| +.++.+++|++-|+++.-+.-|. | .|||.|+|+||||+...+...++. .
T Consensus 111 Dk~v~~wD~~tG--------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~-------- 173 (338)
T KOG0265|consen 111 DKTVRGWDAETG--------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-N-------- 173 (338)
T ss_pred CceEEEEecccc--------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-c--------
Confidence 999999999999 78899999999999999555564 4 599999999999997644322111 0
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
...+..+.+...+..+.+|+ ++.|++||++.++.+.++.+|...+..+..++......
T Consensus 174 ---------------------kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ll 232 (338)
T KOG0265|consen 174 ---------------------KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLL 232 (338)
T ss_pred ---------------------ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccc
Confidence 12355666777777888888 67899999999999999999988766666666555443
Q ss_pred ----ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEE
Q 003171 369 ----EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (842)
Q Consensus 369 ----~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIr 443 (842)
+..++++.+..- ...+..+..+ .|+.- .| .......++||+++ +-+|+.|+.+.
T Consensus 233 snsMd~tvrvwd~rp~--~p~~R~v~if-------~g~~h---------nf---eknlL~cswsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 233 SNSMDNTVRVWDVRPF--APSQRCVKIF-------QGHIH---------NF---EKNLLKCSWSPNGTKITAGSADRFVY 291 (338)
T ss_pred cccccceEEEEEeccc--CCCCceEEEe-------ecchh---------hh---hhhcceeeccCCCCccccccccceEE
Confidence 333332222111 1111111111 11100 01 11223467889988 67889999999
Q ss_pred EEcCCC-CeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEE
Q 003171 444 QWDPNG-NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVL 484 (842)
Q Consensus 444 lWD~~g-~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlW 484 (842)
+||.++ .++..+.||...|+++.+ .-..|.++++|++|.|=
T Consensus 292 vwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 292 VWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred EeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 999965 788899999999999876 45699999999999863
No 60
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.87 E-value=2.1e-22 Score=205.52 Aligned_cols=119 Identities=24% Similarity=0.288 Sum_probs=96.4
Q ss_pred ccCCCCeeEEEEEEeCeEEEEEeecCcCCcchH-----------HHHHHHHHHHHHhcCcCCCCCccchhccCCCceeee
Q 003171 673 AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV-----------NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQM 741 (842)
Q Consensus 673 ~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~-----------~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~ 741 (842)
.++.||.+.+|++++++.|||||+||.++.+|+ +.|.++|.+|+.++.
T Consensus 64 kwSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~--------------------- 122 (356)
T PTZ00312 64 GRSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECS--------------------- 122 (356)
T ss_pred CccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHh---------------------
Confidence 378999999999999999999999999998765 457888888887641
Q ss_pred cccCCCCCCCccCCCCCcCcccEEEEeccceeeecCCChHHHHH-------------HhhhcchHHHHHhhhHHHHhhc-
Q 003171 742 LRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARD-------------FISQRCFDWLRERDQLRAEMEA- 807 (842)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~-------------~i~~~~~~~L~~~DQL~~~~~~- 807 (842)
..+...+++|||||||||+++..+.+-.. +=...+|.+|+++|||.+|+++
T Consensus 123 ---------------~~~~~~~~lF~fGDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~f 187 (356)
T PTZ00312 123 ---------------AFISPSDPLFIFGDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRF 187 (356)
T ss_pred ---------------hccCCCCcEEEeccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhh
Confidence 11346799999999999999755533221 1113568999999999999995
Q ss_pred ------------CCcccCcccCCCCCCCCccc
Q 003171 808 ------------GNVFQGMREADIKFPPTYKF 827 (842)
Q Consensus 808 ------------~~~f~gf~E~~I~F~PTYK~ 827 (842)
.+.|.++.|+||+||||||-
T Consensus 188 d~e~q~l~~~va~~s~~eLaE~pI~FpPTYkr 219 (356)
T PTZ00312 188 DLELQRLMDVVAQQSGVELAEFAIRFPPTYPR 219 (356)
T ss_pred hhhhhhhhhhhhhhcccchhcccccCCCcchh
Confidence 56778999999999999994
No 61
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=2.6e-19 Score=187.98 Aligned_cols=264 Identities=20% Similarity=0.279 Sum_probs=188.9
Q ss_pred eeEEEEecC--CEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCTE--EQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~~--~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+.++.... +.++++ .|+.|++||+.+..... ....+ ..++.++.+.|+++.|++++
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~-~~~i~~~~~~~~~~~l~~~~ 70 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR-------------------TLKGH-TGPVRDVAASADGTYLASGS 70 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE-------------------EEecC-CcceeEEEECCCCCEEEEEc
Confidence 355555543 455554 48999999987532111 11123 56788999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCE-EEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.||.|++|++.++ +....+.+|...|.++.|++++++ ++++.|+.|++||+.+.+....+.
T Consensus 71 ~~~~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------- 132 (289)
T cd00200 71 SDKTIRLWDLETG--------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---------- 132 (289)
T ss_pred CCCeEEEEEcCcc--------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec----------
Confidence 9999999999886 567778899999999999999874 567779999999996533221111
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
.+ ...+.++...+.+..++++. ++.|++||+.+++++..+..+......
T Consensus 133 ---------~~----------~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~----------- 182 (289)
T cd00200 133 ---------GH----------TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS----------- 182 (289)
T ss_pred ---------cC----------CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccce-----------
Confidence 01 23467777777777888877 789999999988887777644322111
Q ss_pred ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec------CccccCCCceEEEEECCCCcEE-EEeCCCe
Q 003171 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGMIW-TGGANGL 441 (842)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~~~~~~~v~al~~s~dg~l~-Sgs~Dgt 441 (842)
+.+.+++...+++..++..+++.. ..+..+...+.++.+++++.++ +++.|+.
T Consensus 183 --------------------~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 242 (289)
T cd00200 183 --------------------VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242 (289)
T ss_pred --------------------EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc
Confidence 222233333344444444444331 1233456688899999998854 5555999
Q ss_pred EEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEe
Q 003171 442 LLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 442 IrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (842)
|++||. +++.+..+..|...|.+++. ++++|++++.|+.|++||
T Consensus 243 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999 68888899999999998865 568999999999999996
No 62
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.87 E-value=1.3e-21 Score=207.19 Aligned_cols=254 Identities=17% Similarity=0.274 Sum_probs=186.0
Q ss_pred EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003171 144 QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (842)
Q Consensus 144 ~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~ 221 (842)
.|.. |+|.-|++|+....... +...+.| .++|+++.++++++.+.+++.|+..|+|+++
T Consensus 189 tlatgg~Dr~Ik~W~v~~~k~~-------------------~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 189 TLATGGSDRIIKLWNVLGEKSE-------------------LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred hhhhcchhhhhhhhhcccchhh-------------------hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 4444 67999999998532211 1122333 5689999999999999999999999999999
Q ss_pred CCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccc
Q 003171 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (842)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~ 300 (842)
.. +...+|.||++.|+++-|..... .+|||.|.|||+||+....+..+..+...
T Consensus 250 ~~--------r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~----------------- 304 (459)
T KOG0288|consen 250 SL--------RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ----------------- 304 (459)
T ss_pred ch--------hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccc-----------------
Confidence 86 77889999999999999987654 88999999999999976544332221110
Q ss_pred eeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEec
Q 003171 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (842)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~ 379 (842)
-++| +.+ ...+.|+- |++|+.||.++..+..+...+
T Consensus 305 ----------cnDI---~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g---------------------------- 341 (459)
T KOG0288|consen 305 ----------CNDI---VCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG---------------------------- 341 (459)
T ss_pred ----------ccce---Eec--ceeeeecccccceEEEeccCCceeeEeecC----------------------------
Confidence 0111 111 22233433 578999999887764433211
Q ss_pred CCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCC-CCeeeeeec
Q 003171 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQY 457 (842)
Q Consensus 380 ~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~-g~~l~~l~~ 457 (842)
+.|.+|..+++|. |.+++.|.++++.|+. .+..++|..
T Consensus 342 ----------------------------------------g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 342 ----------------------------------------GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred ----------------------------------------cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec
Confidence 2355677778887 8888999999999994 566666653
Q ss_pred ------CCccEEEEEecCCEEEEEecCcEEEEEeCC-Cccccccccccc--CEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 458 ------LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS--PVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 458 ------H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~--~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
|.-.--+++|+++|+++||.||.|+||++. |++-..+..... .|+++++ .|.++++++.++.+++|.
T Consensus 382 ~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 332222467899999999999999999986 788777665444 5999996 578899999999999993
No 63
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.1e-20 Score=216.22 Aligned_cols=241 Identities=16% Similarity=0.147 Sum_probs=180.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------c------------------------------------CC-
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL------L------------------------------------DS- 227 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~------~------------------------------------~~- 227 (842)
.++|+|+.|++||++||||+.||.||||.+.... . ..
T Consensus 267 ~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 267 KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 7899999999999999999999999999976610 0 00
Q ss_pred -------CC--CcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecc
Q 003171 228 -------DD--GFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (842)
Q Consensus 228 -------~~--~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~ 298 (842)
.. .-+..+.++||.+-|..|.||.++-|+|+|.|+|||||.+...++...+
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-------------------- 406 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-------------------- 406 (712)
T ss_pred cccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE--------------------
Confidence 00 1122356789999999999999999999999999999999765433222
Q ss_pred cceeccceeeeecCCEEEEEEcCCC-CEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEE
Q 003171 299 SHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (842)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~-~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (842)
.+..-|+|+++.|-+ ..+.||+ |+.++||++...++. .
T Consensus 407 ----------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv------------------------------~ 446 (712)
T KOG0283|consen 407 ----------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV------------------------------D 446 (712)
T ss_pred ----------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE------------------------------e
Confidence 235679999998854 4566777 789999998654331 1
Q ss_pred EecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCCCCeee-e
Q 003171 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQ-D 454 (842)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~l~-~ 454 (842)
|... ..-|+++.+.|||+ .+.|+-+|.+++++..|..++ .
T Consensus 447 W~Dl--------------------------------------~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 447 WNDL--------------------------------------RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred ehhh--------------------------------------hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 1111 13467899999999 688999999999999775443 2
Q ss_pred ee---------cCCccEEEEEe---cCCEEEEEecCcEEEEEeCC-CcccccccccccC---EEE-EEeCCCEEEEEcCC
Q 003171 455 FQ---------YLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP---VIK-MAVGAGYIFTLANH 517 (842)
Q Consensus 455 l~---------~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~---V~s-la~dg~~l~S~S~D 517 (842)
+. .|. .|+.|-+ +...|.+.+.|..|||+|.. .+++..|+|+.+. +.+ +..||++|+++|.|
T Consensus 489 ~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seD 567 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASED 567 (712)
T ss_pred eeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecC
Confidence 22 133 7998854 23467888999999999986 5788999987653 332 33699999999999
Q ss_pred CCeeeccccCCCC
Q 003171 518 GGIRGWNVTSPGP 530 (842)
Q Consensus 518 gtIrvWd~~~~~~ 530 (842)
..|.+|+...+..
T Consensus 568 s~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 568 SWVYIWKNDSFNS 580 (712)
T ss_pred ceEEEEeCCCCcc
Confidence 9999999765443
No 64
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=7.9e-21 Score=212.15 Aligned_cols=229 Identities=20% Similarity=0.338 Sum_probs=180.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEE-EEEec--CCCEEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLS-LCISS--YGDLWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~s-lafs~--dG~L~SgS~DgtIrvW 267 (842)
.+-|..+++- ++..+++||.||++|+|+-.... .-+...+++|.+.|.. +++-+ .|+|++|+.|.+|.+|
T Consensus 14 ~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~~~------~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 14 KSDVRAVAVT-DGVCIISGSRDGTVKVWAKKGKQ------YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred ccchheeEec-CCeEEeecCCCCceeeeeccCcc------cccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 5567666665 45689999999999999976531 2334568899998877 87765 3459999999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~ 346 (842)
.+.+..+... |++| .++|.++.....+. +.|++| .|+++|-. +++..
T Consensus 87 ~~~~~~P~~~-------------------LkgH----------~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~ 134 (745)
T KOG0301|consen 87 KLSQAEPLYT-------------------LKGH----------KSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVY 134 (745)
T ss_pred ecCCCCchhh-------------------hhcc----------ccceeeeecCCcCc-eEecccccceEEecc--hhhhc
Confidence 9876554333 3334 45666677665554 778885 68999954 22211
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
+ +.+|...|.+++
T Consensus 135 ~-------------------------------------------------------------------l~gH~asVWAv~ 147 (745)
T KOG0301|consen 135 S-------------------------------------------------------------------LQGHTASVWAVA 147 (745)
T ss_pred c-------------------------------------------------------------------cCCcchheeeee
Confidence 1 234555666777
Q ss_pred ECCCCcEEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe-cCCEEEEEecCcEEEEEeCCCcccccccccccCEEEEE
Q 003171 427 TSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA 505 (842)
Q Consensus 427 ~s~dg~l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla 505 (842)
.-|++.++|||.|++||+|.. |+++++|.||++-|+.++. ++..++|++.||.|++||++|.++..+.||++-|++++
T Consensus 148 ~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 148 SLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred ecCCCcEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEE
Confidence 778889999999999999997 8999999999999999986 67789999999999999999999999999999999998
Q ss_pred --eCCCEEEEEcCCCCeeecccc
Q 003171 506 --VGAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 506 --~dg~~l~S~S~DgtIrvWd~~ 526 (842)
.+++.++|+|.|+++|+|+..
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecC
Confidence 477889999999999999943
No 65
>PTZ00421 coronin; Provisional
Probab=99.86 E-value=7.1e-20 Score=211.26 Aligned_cols=248 Identities=15% Similarity=0.174 Sum_probs=169.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc-----CCCCCcceeEEecccCCcEEEEEEec-CCC-EEEeeCCCcEE
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL-----DSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIK 265 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~-----~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIr 265 (842)
.|.+...++++..+++++.+..+..|+..++.. +..........+.||+++|++++|+| ++. |+|||.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 455566677777888888888888898765421 00000011224789999999999999 776 89999999999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCC-CEEEEeC-CCcEEEEEccCCc
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRE 343 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~v~s~s-~~tI~lWD~~tg~ 343 (842)
+||+.+....... ... ...+.+| ...|.++++.+.+ ..+++++ |++|+|||+.+++
T Consensus 102 IWdi~~~~~~~~~---~~~---------l~~L~gH----------~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~ 159 (493)
T PTZ00421 102 GWGIPEEGLTQNI---SDP---------IVHLQGH----------TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK 159 (493)
T ss_pred EEecCCCcccccc---Ccc---------eEEecCC----------CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe
Confidence 9999653210000 000 0112233 4567788888764 5777766 6799999999877
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceE
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (842)
.+..+.. |...|.
T Consensus 160 ~~~~l~~-------------------------------------------------------------------h~~~V~ 172 (493)
T PTZ00421 160 AVEVIKC-------------------------------------------------------------------HSDQIT 172 (493)
T ss_pred EEEEEcC-------------------------------------------------------------------CCCceE
Confidence 6444322 223456
Q ss_pred EEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEE--EE-EecCCEEEEEe----cCcEEEEEeCC--Ccccc
Q 003171 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ--CL-CTFGSQIWVGY----MNGIVQVLDLE--GNLLG 492 (842)
Q Consensus 424 al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~--sl-s~dG~~LasGs----~DgtIrlWD~~--g~~i~ 492 (842)
+++++|+|. |++|+.|++|++||+ +++.+.++.+|...+. ++ .+++.+|++++ .|++|+|||+. .+++.
T Consensus 173 sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 788889887 789999999999999 7899999999987543 22 34556666543 48999999986 34455
Q ss_pred ccccccc-CEEEEE--eCCCEEEEEc-CCCCeeeccccCCC
Q 003171 493 GWVAHSS-PVIKMA--VGAGYIFTLA-NHGGIRGWNVTSPG 529 (842)
Q Consensus 493 ~l~gH~~-~V~sla--~dg~~l~S~S-~DgtIrvWd~~~~~ 529 (842)
....|.. .+.... ++++.+++++ .|+.||+|++....
T Consensus 253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 253 TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 4444443 343333 4788888887 59999999987643
No 66
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=1.8e-20 Score=191.95 Aligned_cols=277 Identities=14% Similarity=0.144 Sum_probs=182.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----------cCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL----------LDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~----------~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS 259 (842)
.+++.|.+|++||.++||||.|..||+.|++.-. ++....-..+++|-.|...|+.|.|.|... |+|||
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s 191 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS 191 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence 8899999999999999999999999999987210 011122234678889999999999999877 78999
Q ss_pred CCCcEEEEeCCC--ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCC-cEEE
Q 003171 260 EGGGIKIWPWEA--IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFAL 336 (842)
Q Consensus 260 ~DgtIrvWd~~t--~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~-tI~l 336 (842)
.|+|||++|... .++.++... ....++++.+.+.|..|..+++. +++|
T Consensus 192 rD~tvKlFDfsK~saKrA~K~~q-----------------------------d~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 192 RDNTVKLFDFSKTSAKRAFKVFQ-----------------------------DTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred CCCeEEEEecccHHHHHHHHHhh-----------------------------ccceeeeEeecCCCceEEEecCCCceeE
Confidence 999999999853 111121111 13368889999999999999874 8999
Q ss_pred EEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cCc
Q 003171 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG 414 (842)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~ 414 (842)
||+.|-+|...-.++.|. ..++..+..+..+..-++++.||..++|. .+.
T Consensus 243 Ydv~T~QcfvsanPd~qh----------------------------t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r 294 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQH----------------------------TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR 294 (430)
T ss_pred EeccceeEeeecCccccc----------------------------ccceeEEEecCCccEEEEeccCCcEEeeccccHH
Confidence 999998874332222211 01112233444444446667777666664 122
Q ss_pred ----ccc--CCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCC--ccE----EEEEe-cCCEEEEEe-cC
Q 003171 415 ----FGD--DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLP--FAV----QCLCT-FGSQIWVGY-MN 478 (842)
Q Consensus 415 ----~~~--~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~--~~V----~sls~-dG~~LasGs-~D 478 (842)
+.. ....|.+..|+.+|+ ++|.+.|.+|+||.+ +|++++++.|-. +++ .++.- ...|+..-. ..
T Consensus 295 Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas 374 (430)
T KOG0640|consen 295 CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS 374 (430)
T ss_pred HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccccc
Confidence 222 123566677888777 677777888888888 778888877631 111 11111 233555444 25
Q ss_pred cEEEEEeCCC-cccccc-cccccCEEEEE--eCCCEEEEEcCCCCeeecc
Q 003171 479 GIVQVLDLEG-NLLGGW-VAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 479 gtIrlWD~~g-~~i~~l-~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd 524 (842)
+.+.-||... ..+..| .||+++|..+. +.+-.++++|.|-.+|+|-
T Consensus 375 ~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 375 NSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 6677788653 222222 47888888876 4455677888888888885
No 67
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=9.9e-20 Score=206.99 Aligned_cols=277 Identities=16% Similarity=0.160 Sum_probs=191.3
Q ss_pred CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCC
Q 003171 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDD 229 (842)
Q Consensus 150 D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~ 229 (842)
.|.|++||..=....- -|-+ | .+||..+.|.|++-+.+||+.|-+||+|+..+.
T Consensus 30 sG~IQlWDYRM~tli~-----------------rFde--H-dGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r------ 83 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGTLID-----------------RFDE--H-DGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR------ 83 (1202)
T ss_pred CceeeeehhhhhhHHh-----------------hhhc--c-CCccceeeecCCCCeEEecCCccEEEEEecccc------
Confidence 5789999975322211 1333 3 889999999999999999999999999999886
Q ss_pred CcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceee
Q 003171 230 GFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSS 308 (842)
Q Consensus 230 ~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~ 308 (842)
+++.+|.||-+.|..+.|++.-- ++|+|+|.|||||++.+..+.-.++ ||
T Consensus 84 --rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-------------------GH-------- 134 (1202)
T KOG0292|consen 84 --RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-------------------GH-------- 134 (1202)
T ss_pred --eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-------------------cC--------
Confidence 78899999999999999998643 8899999999999998755433332 33
Q ss_pred eecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccC-CCcccccceEEEEEecCCCCccc
Q 003171 309 ILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL-PDFAMEDEFKTKIVTSSKKDKAQ 386 (842)
Q Consensus 309 ~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~s~~~~~~~~ 386 (842)
+..|.|..+.+....|.|++ |.|||+||+..=+ .+...+ +..+..+..... .+..-..+.-++.+-.. .++.+
T Consensus 135 --nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLR-kk~~~p-g~~e~~~~~~~~~~dLfg~~DaVVK~VLEG-HDRGV 209 (1202)
T KOG0292|consen 135 --NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLR-KKNKAP-GSLEDQMRGQQGNSDLFGQTDAVVKHVLEG-HDRGV 209 (1202)
T ss_pred --ceEEEeeccCCccceEEEecccceEEEEeecchh-ccCCCC-CCchhhhhccccchhhcCCcCeeeeeeecc-ccccc
Confidence 33577777888888999998 8899999985311 111111 111111111111 11100001111121111 23444
Q ss_pred eeeeEeecCcceEEecCCcEEEEee--------cCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeee
Q 003171 387 SSFGFFQRSRNAIMGAADAVRRVAA--------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ 456 (842)
Q Consensus 387 ~s~~~~~~~~~~~~g~~~~v~~v~~--------~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~ 456 (842)
+-.+|.+.-+....|+.|-...+|. ..++.+|...|.++.|.|... ++|.|.|++||+||+ ....+++|.
T Consensus 210 NwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 210 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred ceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence 4566777666777788776555443 245678999999999999765 789999999999999 578999998
Q ss_pred cCCccEEEEEec--CCEEEEEecCcEEEEEeCC
Q 003171 457 YLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 457 ~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~ 487 (842)
-..++-++++.. ...+++ +.|+.+.|+-++
T Consensus 290 rendRFW~laahP~lNLfAA-gHDsGm~VFkle 321 (1202)
T KOG0292|consen 290 RENDRFWILAAHPELNLFAA-GHDSGMIVFKLE 321 (1202)
T ss_pred ccCCeEEEEEecCCcceeee-ecCCceEEEEEc
Confidence 767777777654 555555 567777788765
No 68
>PTZ00420 coronin; Provisional
Probab=99.86 E-value=1.9e-19 Score=209.06 Aligned_cols=223 Identities=17% Similarity=0.153 Sum_probs=158.9
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC-CC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 208 SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
.|+.++.|++|++... ..+..+.||.++|.+++|+|+ +. |+|||.|++|||||+.+.........+ ..
T Consensus 49 gGG~~gvI~L~~~~r~--------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~--p~ 118 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK--------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD--PQ 118 (568)
T ss_pred CCCceeEEEeeecCCC--------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccccc--ce
Confidence 3778899999998764 567789999999999999997 55 789999999999999653211000000 00
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCE-EEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccC
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK-VWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~-v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (842)
..+.+| ...|.++++++.+.. +++++ |++|+|||+++++.+..+.
T Consensus 119 ---------~~L~gH----------~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-------------- 165 (568)
T PTZ00420 119 ---------CILKGH----------KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-------------- 165 (568)
T ss_pred ---------EEeecC----------CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--------------
Confidence 011222 456888888887765 45655 7899999999876533221
Q ss_pred CCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeE
Q 003171 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLL 442 (842)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtI 442 (842)
+...|.+++|+++|. |++++.|++|
T Consensus 166 ------------------------------------------------------~~~~V~SlswspdG~lLat~s~D~~I 191 (568)
T PTZ00420 166 ------------------------------------------------------MPKKLSSLKWNIKGNLLSGTCVGKHM 191 (568)
T ss_pred ------------------------------------------------------cCCcEEEEEECCCCCEEEEEecCCEE
Confidence 012355778899998 5678889999
Q ss_pred EEEcC-CCCeeeeeecCCccEEE--E-----EecCCEEEEEecC----cEEEEEeCC--Ccccccccc--cccCEEEEE-
Q 003171 443 LQWDP-NGNRLQDFQYLPFAVQC--L-----CTFGSQIWVGYMN----GIVQVLDLE--GNLLGGWVA--HSSPVIKMA- 505 (842)
Q Consensus 443 rlWD~-~g~~l~~l~~H~~~V~s--l-----s~dG~~LasGs~D----gtIrlWD~~--g~~i~~l~g--H~~~V~sla- 505 (842)
++||+ +++++.++.+|.+.+.+ + +.++.+|++++.| ++|+|||+. ++++..+.. +.+.+....
T Consensus 192 rIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D 271 (568)
T PTZ00420 192 HIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD 271 (568)
T ss_pred EEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeee
Confidence 99999 78999999999886543 2 2467899988876 489999987 456655433 333333332
Q ss_pred e-CCCEEEEEcCCCCeeeccccC
Q 003171 506 V-GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 506 ~-dg~~l~S~S~DgtIrvWd~~~ 527 (842)
. ++.++++|+.|++||+|++..
T Consensus 272 ~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 272 ESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CCCCCEEEEEECCCeEEEEEccC
Confidence 2 477889999999999999753
No 69
>PTZ00420 coronin; Provisional
Probab=99.86 E-value=1.8e-19 Score=209.23 Aligned_cols=227 Identities=15% Similarity=0.137 Sum_probs=155.0
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (842)
.++|.+++|+|+ +.+|+||+.||+|++||+.++.............+.+|.+.|++|+|+|++. |+|||.|++|+||
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 789999999996 7899999999999999997641000000123446789999999999999986 4799999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
|+.++.....+. + ...+.++..++++..+++++ +++|+|||+++++++.
T Consensus 154 Dl~tg~~~~~i~--------------------~----------~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 154 DIENEKRAFQIN--------------------M----------PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred ECCCCcEEEEEe--------------------c----------CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 997654222111 0 22467788888888888765 6799999999999887
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
++.+|..... .+ .+....
T Consensus 204 tl~gH~g~~~-------------------------------------------------s~-------------~v~~~~ 221 (568)
T PTZ00420 204 SFHIHDGGKN-------------------------------------------------TK-------------NIWIDG 221 (568)
T ss_pred EEecccCCce-------------------------------------------------eE-------------EEEeee
Confidence 7765432100 00 001122
Q ss_pred ECCCC-cEEEEeCCC----eEEEEcCC--CCeeeeeecC--CccEEEE-Ee-cCCEEEEEecCcEEEEEeCC-Cc--ccc
Q 003171 427 TSIDG-MIWTGGANG----LLLQWDPN--GNRLQDFQYL--PFAVQCL-CT-FGSQIWVGYMNGIVQVLDLE-GN--LLG 492 (842)
Q Consensus 427 ~s~dg-~l~Sgs~Dg----tIrlWD~~--g~~l~~l~~H--~~~V~sl-s~-dG~~LasGs~DgtIrlWD~~-g~--~i~ 492 (842)
+++++ .|++++.|+ +|+|||+. ++++..+..+ .+.+..+ .+ +|.++++|+.|++|++|++. +. .+.
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 44554 477777664 79999994 5677665433 2333333 22 47899999999999999986 32 233
Q ss_pred cccccccCEEEEEeCCCE
Q 003171 493 GWVAHSSPVIKMAVGAGY 510 (842)
Q Consensus 493 ~l~gH~~~V~sla~dg~~ 510 (842)
.+. |..++.++++-++.
T Consensus 302 ~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 302 EYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred ccc-cCCCccceEEcccc
Confidence 333 56677777754443
No 70
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.6e-20 Score=189.88 Aligned_cols=289 Identities=17% Similarity=0.234 Sum_probs=200.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCE-EEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~ 269 (842)
...|.-++.+....++.|+|.|.+.++|.+++| .++.+..||.+.|++|.|++.+.| +++|.|++..||..
T Consensus 148 kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--------~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 148 KDGIWHVAADSTQPICGTASADHTARIWSLESG--------ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ccceeeehhhcCCcceeecccccceeEEeeccc--------cceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 667888988877789999999999999999998 789999999999999999999985 69999999999983
Q ss_pred CC----cc----ceeecCCCceee----e----EEEEee-----ceeecccceeccceeeeecCCEEEEEEcCCCCEEEE
Q 003171 270 EA----IE----KALSLKPEERHT----A----ALIVER-----SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS 328 (842)
Q Consensus 270 ~t----~~----~~l~~~~~~~~~----~----~l~~~~-----s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s 328 (842)
.- .. ...+...+..+. . ....+. .+..+.+|. .-|.+.---.++..+.+
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~----------~vV~a~dWL~gg~Q~vT 289 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHR----------AVVSACDWLAGGQQMVT 289 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccc----------cceEehhhhcCcceeee
Confidence 21 11 000000000000 0 000000 011111110 00111001124566777
Q ss_pred eCC-CcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEE
Q 003171 329 AGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVR 407 (842)
Q Consensus 329 ~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~ 407 (842)
++| .|..+||++||+++..|.+|.+..+-... .+..+.+++.+.+..+
T Consensus 290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcst-------------------------------HptQrLVvTsSrDtTF 338 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEVVNILTGHDSELTHCST-------------------------------HPTQRLVVTSSRDTTF 338 (481)
T ss_pred eeccccceeeeeccCceeccccCcchhcccccc-------------------------------CCcceEEEEeccCcee
Confidence 775 68999999999999999888763211110 1111223444455555
Q ss_pred EEee-------cCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-C-CCeeeeeecCCccEEEEEe--cCCEEEEEe
Q 003171 408 RVAA-------KGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCT--FGSQIWVGY 476 (842)
Q Consensus 408 ~v~~-------~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~-g~~l~~l~~H~~~V~sls~--dG~~LasGs 476 (842)
|+|. -..|++|...|.+++|..|.++++||.|.+||+||+ + ...+.++.. .++++-++. .++.|+.--
T Consensus 339 RLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPh 417 (481)
T KOG0300|consen 339 RLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPH 417 (481)
T ss_pred EeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEecc
Confidence 5554 235889999999999999999999999999999999 4 356777765 557776654 456888888
Q ss_pred cCcEEEEEeCCCcccc-----cccccccCEEEEEeCC----CEEEEEcCCCCeeeccccCCC
Q 003171 477 MNGIVQVLDLEGNLLG-----GWVAHSSPVIKMAVGA----GYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 477 ~DgtIrlWD~~g~~i~-----~l~gH~~~V~sla~dg----~~l~S~S~DgtIrvWd~~~~~ 529 (842)
..+.|||+|++|+.+. .-+||.-.|.|.++-. ..|++++-|..+--|++..|.
T Consensus 418 DNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 418 DNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred CCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 8999999999986433 4569999999998632 358899999999999987654
No 71
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.85 E-value=9.4e-21 Score=189.16 Aligned_cols=231 Identities=21% Similarity=0.297 Sum_probs=181.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.....+.+..+.|||+.|-+.++||.-+| .++++| .|.-.|.+++|+.|.. |+||+.++.+||+|+
T Consensus 59 kgavw~~~l~~na~~aasaaadftakvw~a~tg--------delhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 59 KGAVWSATLNKNATRAASAAADFTAKVWDAVTG--------DELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred CcceeeeecCchhhhhhhhcccchhhhhhhhhh--------hhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 889999999988899999999999999999998 566665 5888999999999987 999999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
+..+.. +. .+++| +..|+-+...+.+..+.|++ +++||+||.+||..+++|
T Consensus 130 n~p~Ap----p~--------------E~~gh----------tg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL 181 (334)
T KOG0278|consen 130 NRPKAP----PK--------------EISGH----------TGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL 181 (334)
T ss_pred cCCCCC----ch--------------hhcCC----------CCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE
Confidence 653211 00 01122 34566666666666666655 589999999999887665
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
.-. ..|.++.++
T Consensus 182 ~~~--------------------------------------------------------------------s~VtSlEvs 193 (334)
T KOG0278|consen 182 EFN--------------------------------------------------------------------SPVTSLEVS 193 (334)
T ss_pred ecC--------------------------------------------------------------------CCCcceeec
Confidence 321 123456677
Q ss_pred CCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEE--EEecCCEEEEEecCcEEEEEeCC-Ccccccc-cccccCEEE
Q 003171 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQC--LCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW-VAHSSPVIK 503 (842)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~s--ls~dG~~LasGs~DgtIrlWD~~-g~~i~~l-~gH~~~V~s 503 (842)
+||.+++-...++|++||. +-..++.+.- ...|.+ |.|....+++|+.|..++.+|.. |.-+..+ +||-++|.|
T Consensus 194 ~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhc 272 (334)
T KOG0278|consen 194 QDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHC 272 (334)
T ss_pred cCCCEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEE
Confidence 8999888777788999999 5677777654 344554 45666789999999999999976 7777775 999999999
Q ss_pred EE--eCCCEEEEEcCCCCeeeccccC
Q 003171 504 MA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 504 la--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
|. +||...+|||.||+||+|....
T Consensus 273 VrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 273 VRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred EEECCCCceeeccCCCceEEEEEecC
Confidence 97 5889999999999999999654
No 72
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=8.9e-20 Score=182.86 Aligned_cols=230 Identities=17% Similarity=0.201 Sum_probs=168.0
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (842)
...+..+++++.- ..+++++-||++|+||+.... ..++.|+.|...|.++-+.+-.+ ++++|+|+|||+|
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS-------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCC-------cchhHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence 4578899999854 688899999999999965543 67889999999999999988643 6788999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccC-CcE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDART-REL 344 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~t-g~~ 344 (842)
+........++.. | .+-|...+.++ ....+++++ |+++++||++. |+.
T Consensus 133 ~~~r~~Sv~Tf~g-------------------h----------~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~ 183 (311)
T KOG0277|consen 133 DPNRPNSVQTFNG-------------------H----------NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF 183 (311)
T ss_pred cCCCCcceEeecC-------------------C----------ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce
Confidence 9865332222221 1 11122233333 344555554 67999999864 333
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
+. +..|. ..+.+
T Consensus 184 ~~-i~ah~-------------------------------------------------------------------~Eil~ 195 (311)
T KOG0277|consen 184 MS-IEAHN-------------------------------------------------------------------SEILC 195 (311)
T ss_pred eE-EEecc-------------------------------------------------------------------ceeEe
Confidence 22 22111 11111
Q ss_pred EEEC--CCCcEEEEeCCCeEEEEcCC--CCeeeeeecCCccEEEEEec---CCEEEEEecCcEEEEEeCC-C-ccccccc
Q 003171 425 LTTS--IDGMIWTGGANGLLLQWDPN--GNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE-G-NLLGGWV 495 (842)
Q Consensus 425 l~~s--~dg~l~Sgs~DgtIrlWD~~--g~~l~~l~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~-g-~~i~~l~ 495 (842)
.-++ .+..+++|+.|+.||.||+. ...+.++.+|..+|..+.+. -..||+++.|-|+||||.+ + .++.+..
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~ 275 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD 275 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh
Confidence 1111 12348999999999999994 46788889999999999764 3589999999999999987 3 4688888
Q ss_pred ccccCEEEEE---eCCCEEEEEcCCCCeeecc
Q 003171 496 AHSSPVIKMA---VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 496 gH~~~V~sla---~dg~~l~S~S~DgtIrvWd 524 (842)
-|+..|..+. .++.++++.+.|..+.||+
T Consensus 276 ~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 276 HHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ccceEEeccccccccCceeeecccccceeeec
Confidence 9999999887 3789999999999999998
No 73
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.4e-19 Score=184.62 Aligned_cols=233 Identities=19% Similarity=0.227 Sum_probs=165.3
Q ss_pred eeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC---CEEEeeC
Q 003171 184 FKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSE 260 (842)
Q Consensus 184 ~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG---~L~SgS~ 260 (842)
|..+-| .++++|||++ +.++||||.|-+|+|+|+... .++..+..|.+.|+++.|.++- .|+||++
T Consensus 37 F~~~aH-~~sitavAVs--~~~~aSGssDetI~IYDm~k~--------~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 37 FAFSAH-AGSITALAVS--GPYVASGSSDETIHIYDMRKR--------KQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred cccccc-ccceeEEEec--ceeEeccCCCCcEEEEeccch--------hhhcceeccccceEEEEecCCcchhheeeecC
Confidence 444455 8899999996 799999999999999999986 6777788999999999999876 4999999
Q ss_pred CCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEc
Q 003171 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDA 339 (842)
Q Consensus 261 DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~ 339 (842)
||.|-+|+...-+..-+ +++| ...|+.++..|.+....+.+ |+.+++||+
T Consensus 106 DG~i~iw~~~~W~~~~s-------------------lK~H----------~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL 156 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKS-------------------LKAH----------KGQVTDLSIHPSGKLALSVGGDQVLRTWNL 156 (362)
T ss_pred CCcEEEEEcCCeEEeee-------------------eccc----------ccccceeEecCCCceEEEEcCCceeeeehh
Confidence 99999999855321111 2233 44577788888777666654 789999999
Q ss_pred cCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cCc--c
Q 003171 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG--F 415 (842)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~--~ 415 (842)
-+|+.-.++...... . .+.|.+.+.+-.++..+.+-.+.. .-. .
T Consensus 157 V~Gr~a~v~~L~~~a-t-------------------------------~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~ 204 (362)
T KOG0294|consen 157 VRGRVAFVLNLKNKA-T-------------------------------LVSWSPQGDHFVVSGRNKIDIYQLDNASVFRE 204 (362)
T ss_pred hcCccceeeccCCcc-e-------------------------------eeEEcCCCCEEEEEeccEEEEEecccHhHhhh
Confidence 998764444321110 0 122222222223333332221111 001 1
Q ss_pred ccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe----cCCEEEEEecCcEEEEEeCCC
Q 003171 416 GDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT----FGSQIWVGYMNGIVQVLDLEG 488 (842)
Q Consensus 416 ~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~----dG~~LasGs~DgtIrlWD~~g 488 (842)
.....++.++.|...+.|++|..|+.|++||. .+.++..|.+|.++|.++.+ ++.+|+++|+||.|+|||++.
T Consensus 205 i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 205 IENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred hhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 12335566677777778999999999999999 58889999999999999863 467999999999999999863
No 74
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.6e-20 Score=206.54 Aligned_cols=277 Identities=17% Similarity=0.275 Sum_probs=196.3
Q ss_pred EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeee-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003171 144 QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (842)
Q Consensus 144 ~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~ 221 (842)
-|+. |.|+.||+|+...-.. +...|+..++. |..+|..++.--+|+.|.|+|.|-+|++|+..
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~---------------~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~ 103 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSN---------------EPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAH 103 (735)
T ss_pred eEEecCCCceEEEeccccccC---------------CcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecc
Confidence 3776 6699999999854321 11122111111 27789888888889999999999999999987
Q ss_pred CCccCCCCCcceeEEecccCCcEEEEEE-ecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeeccc
Q 003171 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCI-SSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (842)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~~~V~slaf-s~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~ 299 (842)
.+. .-+..++.-|++.|.||+. -++.. ++||+-|+.|.|||++++...+......
T Consensus 104 ~~~------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~----------------- 160 (735)
T KOG0308|consen 104 KDN------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN----------------- 160 (735)
T ss_pred cCc------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc-----------------
Confidence 751 1345667889999999999 55555 5799999999999998764322211110
Q ss_pred ceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEe
Q 003171 300 HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVT 378 (842)
Q Consensus 300 ~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s 378 (842)
.++....+.+...+.+++..+.+..+++|+ .+-+++||.+|++.+-.|
T Consensus 161 -~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkL------------------------------ 209 (735)
T KOG0308|consen 161 -VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKL------------------------------ 209 (735)
T ss_pred -cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeee------------------------------
Confidence 111111112244577777777776777766 367999999887643222
Q ss_pred cCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeee
Q 003171 379 SSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ 456 (842)
Q Consensus 379 ~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~ 456 (842)
.+|...|.+|..++||+ ++|+|.||+||+||+ ..+|+.++.
T Consensus 210 -------------------------------------rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 210 -------------------------------------RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred -------------------------------------eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence 23445566778888987 999999999999999 689999999
Q ss_pred cCCccEEEEEec--CCEEEEEecCcEEEEEeCCC--cccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 457 YLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 457 ~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g--~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.|...|+++..+ =+++++|+.||.|..=|+.. ++...+ -...+|..+.. +.+.+..+.+|+.|+.|....
T Consensus 253 vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic-k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 253 VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC-KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred eccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee-cCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 999999999654 46999999999999999874 222222 23345666553 355567888999999998543
No 75
>PTZ00421 coronin; Provisional
Probab=99.84 E-value=9.3e-19 Score=202.02 Aligned_cols=223 Identities=13% Similarity=0.159 Sum_probs=152.5
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-C-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvW 267 (842)
.++|.+++|+| ++++|+||+.||+|++||+.++.. .......+..+.||...|.+|+|+|++ . |+||+.|++|+||
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~-~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGL-TQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcc-ccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 88999999999 889999999999999999976410 001113466789999999999999986 3 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
|+.++.....+ .+| ...+.+++.++++..+++++ |++|+|||+++++++.
T Consensus 154 Dl~tg~~~~~l-------------------~~h----------~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 154 DVERGKAVEVI-------------------KCH----------SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred ECCCCeEEEEE-------------------cCC----------CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence 99764322111 111 34577888888888888877 6799999999998877
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
.+..|.... +..+.
T Consensus 205 tl~~H~~~~------------------------------------------------------------------~~~~~ 218 (493)
T PTZ00421 205 SVEAHASAK------------------------------------------------------------------SQRCL 218 (493)
T ss_pred EEecCCCCc------------------------------------------------------------------ceEEE
Confidence 665443210 00011
Q ss_pred ECCC-CcEEEE----eCCCeEEEEcC-CC-CeeeeeecCCc-cEEEE--EecCCEEEEEec-CcEEEEEeCC-Ccccccc
Q 003171 427 TSID-GMIWTG----GANGLLLQWDP-NG-NRLQDFQYLPF-AVQCL--CTFGSQIWVGYM-NGIVQVLDLE-GNLLGGW 494 (842)
Q Consensus 427 ~s~d-g~l~Sg----s~DgtIrlWD~-~g-~~l~~l~~H~~-~V~sl--s~dG~~LasGs~-DgtIrlWD~~-g~~i~~l 494 (842)
+.++ +.++++ +.|++|++||+ +. +.+..+..+.. .+... .+++.+|++|+. |++|++||+. ++++..+
T Consensus 219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 2222 234433 35899999999 43 45555544433 33332 457889998875 9999999987 5655444
Q ss_pred cc-cccCEEEEEeCCC
Q 003171 495 VA-HSSPVIKMAVGAG 509 (842)
Q Consensus 495 ~g-H~~~V~sla~dg~ 509 (842)
.. +..++.++++-++
T Consensus 299 ~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 299 SYSSVEPHKGLCMMPK 314 (493)
T ss_pred eccCCCCCcceEeccc
Confidence 32 4455566654433
No 76
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.84 E-value=1.2e-18 Score=182.61 Aligned_cols=295 Identities=14% Similarity=0.157 Sum_probs=197.2
Q ss_pred eEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 135 LRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 135 ~~~l~~~~~-~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
+.+++.+.+ .|.+ |.|.--.||++.++... +.-..| ..+|.|+.|+.+|.+||||..
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-------------------~eltgH-KDSVt~~~FshdgtlLATGdm 126 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-------------------GELTGH-KDSVTCCSFSHDGTLLATGDM 126 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEccCCcce-------------------eEecCC-CCceEEEEEccCceEEEecCC
Confidence 334444423 3443 56889999999765422 112234 789999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
+|.|+||++.++ .....+.+--+.+-=|.++|-+. |+.|+.||.|-+|.+..+.....+.
T Consensus 127 sG~v~v~~~stg--------~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~----------- 187 (399)
T KOG0296|consen 127 SGKVLVFKVSTG--------GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS----------- 187 (399)
T ss_pred CccEEEEEcccC--------ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-----------
Confidence 999999999997 45555554556677789999888 6899999999999997642221111
Q ss_pred eeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEe-eeecccCCCccc
Q 003171 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIEN-RVDMSLLPDFAM 368 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~-~~~~s~~~~~~~ 368 (842)
|| +.++.+=.+.++|.++.++. +++|++||.+||+++.......+.+- .+.+.......+
T Consensus 188 --------Gh----------~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 188 --------GH----------NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT 249 (399)
T ss_pred --------CC----------CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence 11 22233333456677787776 57999999999999888763322110 011111111000
Q ss_pred ------------ccceEEEEEecC-------CCCccceeeeEeec---CcceEEecCCcEEEEeecC-----ccccCCCc
Q 003171 369 ------------EDEFKTKIVTSS-------KKDKAQSSFGFFQR---SRNAIMGAADAVRRVAAKG-----GFGDDNRR 421 (842)
Q Consensus 369 ------------~~~~~~~~~s~~-------~~~~~~~s~~~~~~---~~~~~~g~~~~v~~v~~~g-----~~~~~~~~ 421 (842)
....|+...... ..+....++.+.+. -+.+..|.-+|...++... ....|...
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~ 329 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG 329 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc
Confidence 001111111110 00111112233222 2455677777776666522 12357778
Q ss_pred eEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeC
Q 003171 422 TEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 422 v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~ 486 (842)
|..+.|-++..|++++.||+|++||. +|+++.++.||...|++++ +++++++++|.|++.+|++.
T Consensus 330 V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 330 VTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred eEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 99999988778999999999999999 8999999999999999875 68899999999999999985
No 77
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.4e-19 Score=177.95 Aligned_cols=233 Identities=15% Similarity=0.230 Sum_probs=167.6
Q ss_pred ceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003171 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (842)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~ 310 (842)
++...+..|+++|.++.|.-||+ .++++.|+|||+|+...+....++.. |
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-------------------h---------- 58 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-------------------H---------- 58 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-------------------C----------
Confidence 45667889999999999999998 67999999999999865443333222 1
Q ss_pred cCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceee
Q 003171 311 TSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSF 389 (842)
Q Consensus 311 s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~ 389 (842)
-.+|.-++.+.++.++++++ |+.+.+||+.||+.++.|.+|..-+|.+.+...
T Consensus 59 G~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNee-------------------------- 112 (307)
T KOG0316|consen 59 GHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEE-------------------------- 112 (307)
T ss_pred CceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCc--------------------------
Confidence 12455566666777777765 788999999999999999988765555444321
Q ss_pred eEeecCcceEEecCCcEEEEee-c-------CccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCc
Q 003171 390 GFFQRSRNAIMGAADAVRRVAA-K-------GGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPF 460 (842)
Q Consensus 390 ~~~~~~~~~~~g~~~~v~~v~~-~-------g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~ 460 (842)
+..++.|+-+...|+|. . ..+.+....|.++.++ +-.|++||.||++|.+|+ .|+....+-+|
T Consensus 113 -----sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~sDy~g~-- 184 (307)
T KOG0316|consen 113 -----SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH-- 184 (307)
T ss_pred -----ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-ccEEEeeccCCcEEEEEeecceeehhhcCC--
Confidence 11222233232222222 0 0111222334444442 224889999999999999 78887777665
Q ss_pred cEEEEE--ecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE----eCCCEEEEEcCCCCeeeccccC
Q 003171 461 AVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA----VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 461 ~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla----~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+|+|++ .||+...+++.|++|+|.|-+ |++++..+||.+.=+.+. .....++|||.||.|.+||+..
T Consensus 185 pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 185 PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 677765 589999999999999999987 999999999998877664 3567899999999999999754
No 78
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=3.7e-20 Score=193.36 Aligned_cols=262 Identities=19% Similarity=0.295 Sum_probs=168.3
Q ss_pred CCeeeeeec-CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEee
Q 003171 182 APFKESVKG-VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS 259 (842)
Q Consensus 182 ~~~~~~~~g-~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS 259 (842)
.||...+.| ...|.|++-+|.. ..++||+.||.|++||+... .++.++++|.+.|..|+++. +.++|++
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--------~~~~~f~AH~G~V~Gi~v~~-~~~~tvg 126 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--------ECIRTFKAHEGLVRGICVTQ-TSFFTVG 126 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh--------hhhheeecccCceeeEEecc-cceEEec
Confidence 456555554 7789999999977 78999999999999999986 67889999999999999998 6699999
Q ss_pred CCCcEEEEeCCCccceeecCCCce-----ee---eEEEEe---eceeecccceeccceeeee--cCCEEEEEEcCCC-CE
Q 003171 260 EGGGIKIWPWEAIEKALSLKPEER-----HT---AALIVE---RSYIDLRSHLSVNGFSSIL--TSDIKNLLSDHSR-AK 325 (842)
Q Consensus 260 ~DgtIrvWd~~t~~~~l~~~~~~~-----~~---~~l~~~---~s~~~l~~~~~~~~~~~~~--s~~v~~las~~~~-~~ 325 (842)
+|+|||.|..+.. ..-++..... +. ..+..- -++||.. ....+++.. ...+.++-+.+.. ..
T Consensus 127 dDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~---R~~Pv~smswG~Dti~svkfNpvETsI 202 (433)
T KOG0268|consen 127 DDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQ---RDNPVSSMSWGADSISSVKFNPVETSI 202 (433)
T ss_pred CCcceeeeeccCC-cceeeeccccccccccccccccccccCceeeecccc---cCCccceeecCCCceeEEecCCCcchh
Confidence 9999999997541 1101100000 00 000000 0001100 000000000 1112233333321 12
Q ss_pred EEEe-CCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCC
Q 003171 326 VWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD 404 (842)
Q Consensus 326 v~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~ 404 (842)
|+++ +|++|.|+|++++.+++.+.
T Consensus 203 Las~~sDrsIvLyD~R~~~Pl~KVi------------------------------------------------------- 227 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQASPLKKVI------------------------------------------------------- 227 (433)
T ss_pred eeeeccCCceEEEecccCCccceee-------------------------------------------------------
Confidence 2222 23444444444443332210
Q ss_pred cEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCC--CCeeeeeecCCccEEEEE--ecCCEEEEEecCc
Q 003171 405 AVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN--GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG 479 (842)
Q Consensus 405 ~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~--g~~l~~l~~H~~~V~sls--~dG~~LasGs~Dg 479 (842)
-.-+...++++|++- +.+|++|..+..+|+. ...++.+.+|.++|+++. |-|+-+++||.|.
T Consensus 228 -------------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 228 -------------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred -------------eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence 001223467778665 6789999999999993 478889999999999985 5699999999999
Q ss_pred EEEEEeCC-Ccccccccccc---cCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 480 IVQVLDLE-GNLLGGWVAHS---SPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 480 tIrlWD~~-g~~i~~l~gH~---~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
+|||+.+. +....+ -|+ ..|.+|.+ |.++++|||.|+.||+|...
T Consensus 295 sIRIf~~~~~~SRdi--YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 295 SIRIFPVNHGHSRDI--YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred eEEEeecCCCcchhh--hhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 99999986 432111 122 24888874 89999999999999999854
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.8e-18 Score=193.83 Aligned_cols=262 Identities=21% Similarity=0.259 Sum_probs=195.7
Q ss_pred CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003171 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (842)
Q Consensus 142 ~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~ 221 (842)
.+.|.++-...|.+|+..+..... . -..+ ...|+++.++++|+.|+.|..+|.|.|||..
T Consensus 188 ~n~laValg~~vylW~~~s~~v~~------------------l-~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~ 247 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSASSGSVTE------------------L-CSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVK 247 (484)
T ss_pred CCeEEEEecceEEEEecCCCceEE------------------e-EecC-CCceEEEEECCCCCEEEEeecCCeEEEEehh
Confidence 335555778899999986543110 0 0122 5689999999999999999999999999998
Q ss_pred CCccCCCCCcceeEEecc-cCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccc
Q 003171 222 ARLLDSDDGFGEVLSWQA-HRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (842)
Q Consensus 222 ~g~~~~~~~~~~~~~l~g-H~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~ 300 (842)
.. +.+..+.+ |...|.++++.. ..+.+|+.|+.|..+|+...+..... +++|
T Consensus 248 ~~--------k~~~~~~~~h~~rvg~laW~~-~~lssGsr~~~I~~~dvR~~~~~~~~------------------~~~H 300 (484)
T KOG0305|consen 248 EQ--------KKTRTLRGSHASRVGSLAWNS-SVLSSGSRDGKILNHDVRISQHVVST------------------LQGH 300 (484)
T ss_pred hc--------cccccccCCcCceeEEEeccC-ceEEEecCCCcEEEEEEecchhhhhh------------------hhcc
Confidence 85 66777888 999999999983 34779999999999999764432220 1112
Q ss_pred eeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEec
Q 003171 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (842)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~ 379 (842)
...|.-+..++++..++|++ |..+.|||..+.+++..+.
T Consensus 301 ----------~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~------------------------------ 340 (484)
T KOG0305|consen 301 ----------RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT------------------------------ 340 (484)
T ss_pred ----------cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe------------------------------
Confidence 33566677778888888887 6789999985444333332
Q ss_pred CCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC--CCcEEEEe--CCCeEEEEcC-CCCeeee
Q 003171 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI--DGMIWTGG--ANGLLLQWDP-NGNRLQD 454 (842)
Q Consensus 380 ~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~--dg~l~Sgs--~DgtIrlWD~-~g~~l~~ 454 (842)
+|...|.++++.| .|.||+|+ .|++|++||+ +|.+++.
T Consensus 341 -------------------------------------~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 341 -------------------------------------EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred -------------------------------------ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence 3334455566666 35577765 6999999999 7888887
Q ss_pred eecCCccEEEEEec--CCEEEE--EecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 455 FQYLPFAVQCLCTF--GSQIWV--GYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 455 l~~H~~~V~sls~d--G~~Las--Gs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
... ...|.+|... .+-|++ |..+..|.||+.. -+.+..+.||+..|..++ +||+.+++|+.|.|+|+|++-.
T Consensus 384 vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 384 VDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 754 5679998654 433443 5568899999976 578999999999999987 6999999999999999999866
Q ss_pred C
Q 003171 528 P 528 (842)
Q Consensus 528 ~ 528 (842)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
No 80
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.82 E-value=1.3e-19 Score=181.09 Aligned_cols=238 Identities=17% Similarity=0.275 Sum_probs=181.4
Q ss_pred CCccccCceeEEEEecCCEEEE-------------ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCC
Q 003171 126 LRETQIGCFLRTIVCTEEQLWA-------------GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVS 192 (842)
Q Consensus 126 ~~~~~~~~~~~~l~~~~~~l~~-------------~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 192 (842)
||.-.+|.++-+..++..-+|. +.|=+-+|||.-++...- .| ++ .-
T Consensus 43 lr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelh-----------------sf-~h---kh 101 (334)
T KOG0278|consen 43 LRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELH-----------------SF-EH---KH 101 (334)
T ss_pred hccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhh-----------------hh-hh---hh
Confidence 7778888888888877777774 347789999976543221 12 22 34
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
-|.+++|+.|...|.||+.+..+|++|++... .+...+.||++.|..+.|....+ ++|.+.|+|||+||..+
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~-------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT 174 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-------APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT 174 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCC-------CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc
Confidence 79999999999999999999999999998763 45566889999999999987655 88889999999999988
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecC
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNID 351 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~ 351 (842)
+....++.. ...++++-.+++|..|..+-..+|+.||+.+-.+++.+...
T Consensus 175 gt~v~sL~~------------------------------~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P 224 (334)
T KOG0278|consen 175 GTEVQSLEF------------------------------NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP 224 (334)
T ss_pred CcEEEEEec------------------------------CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCc
Confidence 653322210 33566677777777777666679999999987777765432
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg 431 (842)
-.+ ++....|+.
T Consensus 225 ~nV--------------------------------------------------------------------~SASL~P~k 236 (334)
T KOG0278|consen 225 CNV--------------------------------------------------------------------ESASLHPKK 236 (334)
T ss_pred ccc--------------------------------------------------------------------ccccccCCC
Confidence 211 111122333
Q ss_pred -cEEEEeCCCeEEEEcC-CCCeeeee-ecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Cc
Q 003171 432 -MIWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GN 489 (842)
Q Consensus 432 -~l~Sgs~DgtIrlWD~-~g~~l~~l-~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~ 489 (842)
.++.|+.|..+..+|- +|+.+..+ ++|-++|.|+. |||..-++||.||+||||... ++
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 3677889999999999 89888887 89999999984 689999999999999999976 44
No 81
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.4e-17 Score=172.42 Aligned_cols=265 Identities=15% Similarity=0.201 Sum_probs=194.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee--CCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS--EGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS--~DgtIrvW 267 (842)
.+.|.++.|+++|..|++.+.|.+++++|...+ +...++.-+.-.|..+.|..... +.-+| .|.+||.-
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--------~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--------KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--------ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 568999999999999999999999999999998 66777766677888899987655 54444 59999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
++.+.+.. ++ +.|| ...|..+..+|.+..+.|++ |++|++||+++.+|..
T Consensus 86 sl~dNkyl-RY------------------F~GH----------~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg 136 (311)
T KOG1446|consen 86 SLHDNKYL-RY------------------FPGH----------KKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG 136 (311)
T ss_pred EeecCceE-EE------------------cCCC----------CceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce
Confidence 99765432 22 1233 44577788888888888888 7899999999888866
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCC-cEEEEee----cCccc-----
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAA----KGGFG----- 416 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v~~v~~----~g~~~----- 416 (842)
.+...+.... ++ .|.+...+++... .+...+. +|.|.
T Consensus 137 ~l~~~~~pi~--Af-------------------------------Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~ 183 (311)
T KOG1446|consen 137 LLNLSGRPIA--AF-------------------------------DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT 183 (311)
T ss_pred EEecCCCcce--eE-------------------------------CCCCcEEEEecCCCeEEEEEecccCCCCceeEccC
Confidence 5543222111 11 1111111111111 1111111 23222
Q ss_pred -cCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccE----E-EEEecCCEEEEEecCcEEEEEeCC-
Q 003171 417 -DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAV----Q-CLCTFGSQIWVGYMNGIVQVLDLE- 487 (842)
Q Consensus 417 -~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V----~-sls~dG~~LasGs~DgtIrlWD~~- 487 (842)
....+...+.|||||+ |+.++..+.+.+-|. +|..++++.+|.+.- . ++.|||++|.+|+.||+|.+|+++
T Consensus 184 ~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 184 DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 2345667799999999 677777888999999 999999999877643 3 346899999999999999999998
Q ss_pred Ccccccccc-cccCEEEEEeCCCEEEEEcCCCCeeeccc
Q 003171 488 GNLLGGWVA-HSSPVIKMAVGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 488 g~~i~~l~g-H~~~V~sla~dg~~l~S~S~DgtIrvWd~ 525 (842)
|+.+..+.+ |.+++.++.+.+++..=++.+..+-+|-.
T Consensus 264 g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 264 GKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLP 302 (311)
T ss_pred CcEeeEecCCCCCCccccccCCceeeeeecCceEEEEec
Confidence 888888888 78999999999998887888888999964
No 82
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.81 E-value=5.4e-18 Score=171.18 Aligned_cols=268 Identities=17% Similarity=0.191 Sum_probs=187.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..|++-+.++-+|.+|+|+++|.++-+|-..+| +.+-++.||+++|+|+..+-+.+ |+|||.|.++||||+
T Consensus 10 ERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--------erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--------ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccceEEecCCCcEEEEecCCCCceEEEecCC--------ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 778999999999999999999999999998777 67889999999999999998887 899999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCC------cEEEEEccCCc
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL------SFALWDARTRE 343 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~------tI~lWD~~tg~ 343 (842)
++++....... ...|+.+-++.++..+..+.++ .|.++|++...
T Consensus 82 ~tGk~la~~k~------------------------------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 82 ETGKQLATWKT------------------------------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred CCCcEEEEeec------------------------------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 98764432211 2245666666666665555442 46677775321
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEe-ecCcceEEecCCcEEEEee--cC-cc----
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF-QRSRNAIMGAADAVRRVAA--KG-GF---- 415 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~-~~~~~~~~g~~~~v~~v~~--~g-~~---- 415 (842)
. +. ..++.-.++... +... +...| +.+..++.|+.+|-...+. .| .+
T Consensus 132 ~--------~~-------------~s~ep~~kI~t~---~ski-t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~ 186 (327)
T KOG0643|consen 132 S--------DI-------------DSEEPYLKIPTP---DSKI-TSALWGPLGETIIAGHEDGSISIYDARTGKELVDSD 186 (327)
T ss_pred h--------hh-------------cccCceEEecCC---ccce-eeeeecccCCEEEEecCCCcEEEEEcccCceeeech
Confidence 1 00 000000011111 0111 11222 2345667888887555543 22 12
Q ss_pred ccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC----
Q 003171 416 GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE---- 487 (842)
Q Consensus 416 ~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~---- 487 (842)
..|...|..+.+++|.. .++||.|.+-++||. +-++++++.. ..+|++.+ |.-.+++.|+- ..--|++
T Consensus 187 ~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGG---qeA~dVTTT~~ 262 (327)
T KOG0643|consen 187 EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGG---QEAMDVTTTST 262 (327)
T ss_pred hhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceecccccceEEecCC---ceeeeeeeecc
Confidence 34778899999999998 799999999999999 6799999975 56888765 44456665542 2222321
Q ss_pred --Cc------------ccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccc
Q 003171 488 --GN------------LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 488 --g~------------~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~ 525 (842)
|+ .+...+||=++|++|+ |+|+..+||+.||.||+--+
T Consensus 263 r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 263 RAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred cccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 32 3677889999999998 58899999999999998654
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.4e-17 Score=159.47 Aligned_cols=294 Identities=20% Similarity=0.283 Sum_probs=203.1
Q ss_pred CCccccCceeEEEEecCC-EEEE-ec-CCCEEEEeCCCCccccccccccccCCCCCCCC-CC----eeeeeecCCCeEEE
Q 003171 126 LRETQIGCFLRTIVCTEE-QLWA-GG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGT-AP----FKESVKGVSSVMCM 197 (842)
Q Consensus 126 ~~~~~~~~~~~~l~~~~~-~l~~-~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~g~~~V~~l 197 (842)
|-++| -+|+++++.. .||+ |+ ..++||.-..... ..|++.+.. .| ++...|+.++|+|.
T Consensus 29 l~dsq---airav~fhp~g~lyavgsnskt~ric~yp~l~----------~~r~~hea~~~pp~v~~kr~khhkgsiyc~ 95 (350)
T KOG0641|consen 29 LEDSQ---AIRAVAFHPAGGLYAVGSNSKTFRICAYPALI----------DLRHAHEAAKQPPSVLCKRNKHHKGSIYCT 95 (350)
T ss_pred ecchh---heeeEEecCCCceEEeccCCceEEEEcccccc----------CcccccccccCCCeEEeeeccccCccEEEE
Confidence 44455 6888888854 8887 44 5689987543211 123333322 11 33333448899999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC----CC-EEEee-CCCcEEEEeCCC
Q 003171 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY----GD-LWSGS-EGGGIKIWPWEA 271 (842)
Q Consensus 198 a~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d----G~-L~SgS-~DgtIrvWd~~t 271 (842)
+++|+|++|++||.|.+|++-..+...| +....-+.|.-|.+.|..++|-.+ |. |+|++ .|..|.+=|..+
T Consensus 96 ~ws~~geliatgsndk~ik~l~fn~dt~---~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 96 AWSPCGELIATGSNDKTIKVLPFNADTC---NATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred EecCccCeEEecCCCceEEEEecccccc---cccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 9999999999999999999887665321 222233556779999999999755 23 56654 466666666654
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeec
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (842)
++.-..+.. | ++.+..+.+- ++..+++++ |+||+.||++-..++.++.-
T Consensus 173 g~~~~a~sg-------------------h----------tghilalysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~ 222 (350)
T KOG0641|consen 173 GQGFHALSG-------------------H----------TGHILALYSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDN 222 (350)
T ss_pred CCcceeecC-------------------C----------cccEEEEEEe-cCcEEEccCCCceEEEEeeeccceeeeccC
Confidence 432222221 1 3345555554 466777777 78999999987777655421
Q ss_pred CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC
Q 003171 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (842)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d 430 (842)
+- ++ |.+ ....|.+++..|.
T Consensus 223 ~~-----------------------------~~-----------------------------~gl--essavaav~vdps 242 (350)
T KOG0641|consen 223 DF-----------------------------HD-----------------------------GGL--ESSAVAAVAVDPS 242 (350)
T ss_pred cc-----------------------------cC-----------------------------CCc--ccceeEEEEECCC
Confidence 00 00 000 1234678889999
Q ss_pred Cc-EEEEeCCCeEEEEcCC-CCeeeeeecCCccEEEEEec--CCEEEEEecCcEEEEEeCCCcc-----cccccccccCE
Q 003171 431 GM-IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGNL-----LGGWVAHSSPV 501 (842)
Q Consensus 431 g~-l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g~~-----i~~l~gH~~~V 501 (842)
|+ |++|..|....++|+. |+.++.|..|+..|.|+.+. ..|+.+++.|..|+|=|+.|.+ +.+...|.+.+
T Consensus 243 grll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~ 322 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKA 322 (350)
T ss_pred cceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCce
Confidence 98 6899999999999995 67899999999999999765 3499999999999999998754 44556788888
Q ss_pred EEEEeCCC--EEEEEcCCCCeeeccc
Q 003171 502 IKMAVGAG--YIFTLANHGGIRGWNV 525 (842)
Q Consensus 502 ~sla~dg~--~l~S~S~DgtIrvWd~ 525 (842)
..+.+.++ .++|.|.|+++.+|-+
T Consensus 323 i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 323 IQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred EEEEecCccceeeeccCcceEEEecc
Confidence 88877655 4779999999999974
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.9e-18 Score=187.05 Aligned_cols=226 Identities=20% Similarity=0.263 Sum_probs=171.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPW 269 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~ 269 (842)
..|+++.|-.||++++.|..-|.|+++|+.+. ..++++++|+.+|..+-|+|.+. |++||+|+.+|+||+
T Consensus 69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred cceeEEEeecCCeEEEccCCcCcEEEeccccH--------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 46888899889999999999999999997663 45677899999999999999876 679999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccCC-cEEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR-ELLK 346 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~tg-~~l~ 346 (842)
.+..-+.. +.+| ...|++.+..+... .|++|+ |++|++||+++. ..+.
T Consensus 141 s~a~v~~~-------------------l~~h----------tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 141 STAYVQAE-------------------LSGH----------TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV 191 (487)
T ss_pred CCcEEEEE-------------------ecCC----------cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE
Confidence 76432111 2223 55688888777544 788888 578999998764 2222
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
.| .|...|+.+.
T Consensus 192 el--------------------------------------------------------------------nhg~pVe~vl 203 (487)
T KOG0310|consen 192 EL--------------------------------------------------------------------NHGCPVESVL 203 (487)
T ss_pred Ee--------------------------------------------------------------------cCCCceeeEE
Confidence 22 1333455556
Q ss_pred ECCCCc-EEEEeCCCeEEEEcC-CCC-eeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccC
Q 003171 427 TSIDGM-IWTGGANGLLLQWDP-NGN-RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (842)
Q Consensus 427 ~s~dg~-l~Sgs~DgtIrlWD~-~g~-~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (842)
+-|.|. +++++.+ .||+||+ +|. .+..+..|...|+|+.. ++++|+||+.|+.|+++|++ -+.+..|+- .++
T Consensus 204 ~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~p 281 (487)
T KOG0310|consen 204 ALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGP 281 (487)
T ss_pred EcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-ccc
Confidence 656655 6777755 5999999 464 44555559999999965 67999999999999999965 467777754 578
Q ss_pred EEEEE--eCCCEEEEEcCCCCeeecc
Q 003171 501 VIKMA--VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 501 V~sla--~dg~~l~S~S~DgtIrvWd 524 (842)
|.+++ +|++.++-|-.||.+-+=+
T Consensus 282 vLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 282 VLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred eeeEEecCCCceEEEecccceeeeeh
Confidence 88876 5778999999999876543
No 85
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.1e-18 Score=175.15 Aligned_cols=245 Identities=20% Similarity=0.233 Sum_probs=167.3
Q ss_pred eee-cCCCCCcccc---CceeEEEEe---cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec
Q 003171 119 LEV-KPHPLRETQI---GCFLRTIVC---TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG 190 (842)
Q Consensus 119 ~~~-~~~~~~~~~~---~~~~~~l~~---~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 190 (842)
+|+ +|..++|.+. ...+..++= .++++++ +.||++|+||+.... .+...|+++
T Consensus 43 le~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s----------------~Pi~~~kEH--- 103 (311)
T KOG0277|consen 43 LEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS----------------KPIHKFKEH--- 103 (311)
T ss_pred EecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC----------------cchhHHHhh---
Confidence 455 4556666432 334444442 2557776 679999999964321 122235552
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-C-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvW 267 (842)
...|.++.+++ +++.+.++|.|||||+|+..-+ +-++++.||..-|...+|+|-- . ++|+|.|+++|+|
T Consensus 104 ~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lw 175 (311)
T KOG0277|consen 104 KREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLW 175 (311)
T ss_pred hhheEEeccccccceeEEeeccCCceEeecCCCC--------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEE
Confidence 66899999887 4567888899999999999876 6788999999999999999963 4 6799999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccCCc-E
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRE-L 344 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~tg~-~ 344 (842)
|+....+.+.+.. | ..++.+.--+. +...|++++ |+.|+.||++.-+ +
T Consensus 176 dvr~~gk~~~i~a-------------------h----------~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 176 DVRSPGKFMSIEA-------------------H----------NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP 226 (311)
T ss_pred EecCCCceeEEEe-------------------c----------cceeEeecccccCCcEEEecCCCceEEEEehhhcccc
Confidence 9865322222111 1 22233322222 344566655 6899999987522 1
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
+..+ .| |.-.|+.
T Consensus 227 l~eL---------------------------------------------------~g----------------h~~AVRk 239 (311)
T KOG0277|consen 227 LFEL---------------------------------------------------NG----------------HGLAVRK 239 (311)
T ss_pred ceee---------------------------------------------------cC----------------CceEEEE
Confidence 1111 12 2223344
Q ss_pred EEECCCC--cEEEEeCCCeEEEEcCC-C-CeeeeeecCCccEEEEE---ecCCEEEEEecCcEEEEEeC
Q 003171 425 LTTSIDG--MIWTGGANGLLLQWDPN-G-NRLQDFQYLPFAVQCLC---TFGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 425 l~~s~dg--~l~Sgs~DgtIrlWD~~-g-~~l~~l~~H~~~V~sls---~dG~~LasGs~DgtIrlWD~ 486 (842)
+.+||-- .|+|++-|-|+|+||.. + .++.+...|+.-|..+. .++.++|+.+-|+.+.||+.
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 5566643 38999999999999994 4 57788888999888773 26889999999999999985
No 86
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=1.5e-18 Score=186.50 Aligned_cols=239 Identities=20% Similarity=0.281 Sum_probs=173.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccC------------CCCCcceeEEecccCCcEEEEEEecCCC-EEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD------------SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS 257 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~------------~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S 257 (842)
.-+|.||+++|+++++++++.||+|--|++.+|... ....++. ..++|...|.+++.|+||+ |+|
T Consensus 142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~--~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKE--SRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCc--ccccccceeEEEEEcCCCcEEEe
Confidence 668999999999999999999999999999887411 0011111 1148999999999999999 899
Q ss_pred eeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEE
Q 003171 258 GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFAL 336 (842)
Q Consensus 258 gS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~l 336 (842)
|+.|..|-||+.++.+....+. +| ...|..|++-.+...+++++ |.++++
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~-------------------gh----------r~~V~~L~fr~gt~~lys~s~Drsvkv 270 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFK-------------------GH----------RGAVSSLAFRKGTSELYSASADRSVKV 270 (479)
T ss_pred cCCCceEEEecCcccchhhccc-------------------cc----------ccceeeeeeecCccceeeeecCCceEE
Confidence 9999999999998865432222 22 34566777766666666665 789999
Q ss_pred EEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccc
Q 003171 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (842)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~ 416 (842)
|++..-..+.+|-+|. +
T Consensus 271 w~~~~~s~vetlyGHq---------------------------------------------------d------------ 287 (479)
T KOG0299|consen 271 WSIDQLSYVETLYGHQ---------------------------------------------------D------------ 287 (479)
T ss_pred EehhHhHHHHHHhCCc---------------------------------------------------c------------
Confidence 9987555444443332 2
Q ss_pred cCCCceEEEEECCCCcEEE-EeCCCeEEEEcCCCCeeeeeecCCccEEEEEe-cCCEEEEEecCcEEEEEeCC-Cccccc
Q 003171 417 DDNRRTEALTTSIDGMIWT-GGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~l~S-gs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (842)
.|.++....-+++++ |+.|+|+++|++.-+..-+|.+|.+.+.|+++ +..++++||.+|.|.||++. -+++.+
T Consensus 288 ----~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 288 ----GVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFT 363 (479)
T ss_pred ----ceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeE
Confidence 222222223345555 44899999999965555578899999999987 67799999999999999975 333222
Q ss_pred c-cc-----------cccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 494 W-VA-----------HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 494 l-~g-----------H~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
. .+ |..+|++|+ +....++|||.+|.||+|.+..
T Consensus 364 ~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred eeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 1 12 223899988 4667899999999999998654
No 87
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.80 E-value=2.8e-18 Score=201.01 Aligned_cols=304 Identities=19% Similarity=0.217 Sum_probs=212.9
Q ss_pred CCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCcc----CCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCc
Q 003171 191 VSSVMCMVGDEASGVVWSGH--RDGRIMCWKMNARLL----DSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG 263 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs--~DGtIrlWdl~~g~~----~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt 263 (842)
...|.++.++|+|..++||+ .||.+++|+.+.-.. ...+.-+++.+..-|.+.|+|+.|||||+ |++||+|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 56799999999999999999 999999999764210 00111233456678999999999999998 899999999
Q ss_pred EEEEeCCCc-cceeecC-CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEcc
Q 003171 264 IKIWPWEAI-EKALSLK-PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR 340 (842)
Q Consensus 264 IrvWd~~t~-~~~l~~~-~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~ 340 (842)
|-||..... ....-.. ......+.. +....+++| .++|.-+.-++++..+++++ |.+|.|||.+
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~w---k~~~~l~~H----------~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~ 159 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESW---KVVSILRGH----------DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK 159 (942)
T ss_pred EEEeeecccCCccccccccccccccee---eEEEEEecC----------CCccceeccCCCccEEEEecccceEEEEccc
Confidence 999998631 0000000 111111100 111233444 67888888888888999988 7899999999
Q ss_pred CCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCC
Q 003171 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (842)
Q Consensus 341 tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~ 420 (842)
|.++++++.+|..
T Consensus 160 tF~~~~vl~~H~s------------------------------------------------------------------- 172 (942)
T KOG0973|consen 160 TFELLKVLRGHQS------------------------------------------------------------------- 172 (942)
T ss_pred cceeeeeeecccc-------------------------------------------------------------------
Confidence 9988877765432
Q ss_pred ceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCcc------EE--EEEecCCEEEEEec----CcEEEEEeC
Q 003171 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFA------VQ--CLCTFGSQIWVGYM----NGIVQVLDL 486 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~------V~--sls~dG~~LasGs~----DgtIrlWD~ 486 (842)
.|-.+.|+|-|+ ++|-+.|++|++|++ +-.+.+.++.+-.. .+ +.+|||++|++.-. -.++.|.+.
T Consensus 173 ~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 173 LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 222356777777 899999999999997 54566666554331 22 34789999998764 358899988
Q ss_pred C-CcccccccccccCEEEEEeCC-------C------------EEEEEcCCCCeeeccccCCCCCcchhhhhhccccccc
Q 003171 487 E-GNLLGGWVAHSSPVIKMAVGA-------G------------YIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLY 546 (842)
Q Consensus 487 ~-g~~i~~l~gH~~~V~sla~dg-------~------------~l~S~S~DgtIrvWd~~~~~~~d~~l~~~l~~r~~~y 546 (842)
. .+.-..|.||..+|.++.+.+ + .+++||.|++|.||....+.|+--+ +++...
T Consensus 253 ~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi--~~lf~~---- 326 (942)
T KOG0973|consen 253 GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI--HNLFNK---- 326 (942)
T ss_pred CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh--hhhhcC----
Confidence 6 467888999999999987421 1 4679999999999998888886532 223222
Q ss_pred ccccceeEEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCc
Q 003171 547 TRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMG 595 (842)
Q Consensus 547 ~~~~~~~i~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~~ 595 (842)
.|.-..|+-.+...-.-+ .|--|++|.|||=+++
T Consensus 327 ------SI~DmsWspdG~~LfacS---------~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 327 ------SIVDMSWSPDGFSLFACS---------LDGTVALIHFEEKELG 360 (942)
T ss_pred ------ceeeeeEcCCCCeEEEEe---------cCCeEEEEEcchHHhC
Confidence 377888987654321111 2345899999997654
No 88
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.8e-17 Score=161.07 Aligned_cols=245 Identities=16% Similarity=0.177 Sum_probs=167.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc-----CC--CCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL-----DS--DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG 262 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~-----~~--~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dg 262 (842)
+..|.+++|.|.|++.+.||...++|+--...-.. +. ..+......-+.|++.|.|.+|||+|+ |++||.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 67899999999999999999999999875322100 00 011122233467999999999999999 57999999
Q ss_pred cEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC----CCCEEEEeCCC--cEEE
Q 003171 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH----SRAKVWSAGFL--SFAL 336 (842)
Q Consensus 263 tIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~----~~~~v~s~s~~--tI~l 336 (842)
+||+-..+...+....+. ++ + ..+.+.++-+++-. .+..+++++-+ .|.+
T Consensus 112 ~ik~l~fn~dt~~~~g~d----le-~-------------------nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~ 167 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHD----LE-F-------------------NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI 167 (350)
T ss_pred eEEEEecccccccccCcc----ee-e-------------------eecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence 999998765333222211 00 0 01133444444421 34456665533 4555
Q ss_pred EEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccc
Q 003171 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (842)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~ 416 (842)
=|..+|+....+.+|. +.
T Consensus 168 tdc~~g~~~~a~sght---------------------------------------------------gh----------- 185 (350)
T KOG0641|consen 168 TDCGRGQGFHALSGHT---------------------------------------------------GH----------- 185 (350)
T ss_pred eecCCCCcceeecCCc---------------------------------------------------cc-----------
Confidence 5655555544443332 11
Q ss_pred cCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeec-------CCccEEEEEe--cCCEEEEEecCcEEEEEeC
Q 003171 417 DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY-------LPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~-------H~~~V~sls~--dG~~LasGs~DgtIrlWD~ 486 (842)
|.++.-=.+-.+++||.|.+||+||+ -..|+.++.. .++.|.++++ .|+.|++|-.|..-.|||+
T Consensus 186 -----ilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 186 -----ILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred -----EEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 11111101224789999999999999 5677777642 3467887775 5889999999999999999
Q ss_pred C-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 487 E-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 487 ~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
. |+.++.+..|+..|.++.+ ...+++++|.|..||+=|++
T Consensus 261 rg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 261 RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred eCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 8 5789999999999999986 45689999999999998864
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=1.3e-17 Score=179.46 Aligned_cols=274 Identities=18% Similarity=0.287 Sum_probs=178.3
Q ss_pred cCCEEEE-ecCCCEEEEeCCCCccccccc-cccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003171 141 TEEQLWA-GGENGLRVWNLKELYDESESD-SVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCW 218 (842)
Q Consensus 141 ~~~~l~~-~~D~~vrvWdl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlW 218 (842)
++...+. +.|++|-=|+..++.....-+ +.-...+++.....+- ..| ...++|+++++||++|+||..|..|.||
T Consensus 153 d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h-~keil~~avS~Dgkylatgg~d~~v~Iw 229 (479)
T KOG0299|consen 153 DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGH-VKEILTLAVSSDGKYLATGGRDRHVQIW 229 (479)
T ss_pred cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccc-cceeEEEEEcCCCcEEEecCCCceEEEe
Confidence 3445554 679999999997665321100 0000011232222111 134 6789999999999999999999999999
Q ss_pred ECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeec
Q 003171 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (842)
Q Consensus 219 dl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l 297 (842)
+..+. +.+..|.||+++|.+++|-... +|+|+|.|++||+|+++.....-+++.+.
T Consensus 230 ~~~t~--------ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHq--------------- 286 (479)
T KOG0299|consen 230 DCDTL--------EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQ--------------- 286 (479)
T ss_pred cCccc--------chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCc---------------
Confidence 99997 6788899999999999997643 49999999999999996533222222221
Q ss_pred ccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEE
Q 003171 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (842)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (842)
..|..+-.. ...++++.+ |.|++||++.. +..-+|
T Consensus 287 --------------d~v~~IdaL-~reR~vtVGgrDrT~rlwKi~e-esqlif--------------------------- 323 (479)
T KOG0299|consen 287 --------------DGVLGIDAL-SRERCVTVGGRDRTVRLWKIPE-ESQLIF--------------------------- 323 (479)
T ss_pred --------------cceeeechh-cccceEEeccccceeEEEeccc-cceeee---------------------------
Confidence 122222222 233444433 68999999832 111111
Q ss_pred EEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeee
Q 003171 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQD 454 (842)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~ 454 (842)
.++...+.+++|=.+..++|||.||+|.||++ +.+.+.+
T Consensus 324 ----------------------------------------rg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 324 ----------------------------------------RGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFT 363 (479)
T ss_pred ----------------------------------------eCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeE
Confidence 11223345666666778999999999999999 6666554
Q ss_pred ee-c-----------CCccEEEEEec--CCEEEEEecCcEEEEEeCC-C----cccccccccccCEEEEEe--CCCEEE-
Q 003171 455 FQ-Y-----------LPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE-G----NLLGGWVAHSSPVIKMAV--GAGYIF- 512 (842)
Q Consensus 455 l~-~-----------H~~~V~sls~d--G~~LasGs~DgtIrlWD~~-g----~~i~~l~gH~~~V~sla~--dg~~l~- 512 (842)
.. . +..||++|+.- ...+++|+.+|.||||-++ | +++..+. -.+.|++|++ +|+.++
T Consensus 364 ~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~iva 442 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVA 442 (479)
T ss_pred eeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEE
Confidence 43 1 22389999763 3599999999999999986 4 2455554 5678999884 777554
Q ss_pred EEcCCCCeeecc
Q 003171 513 TLANHGGIRGWN 524 (842)
Q Consensus 513 S~S~DgtIrvWd 524 (842)
..+....+=.|-
T Consensus 443 giGkEhRlGRW~ 454 (479)
T KOG0299|consen 443 GIGKEHRLGRWW 454 (479)
T ss_pred ecccccccceee
Confidence 444444444443
No 90
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=1.9e-17 Score=166.84 Aligned_cols=250 Identities=16% Similarity=0.198 Sum_probs=175.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC--CEEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrvWd 268 (842)
.+.|.++++.-+|..|++|+.|+++++|+++.. ++.......||.+.|-.++++|.. .++++|.|++||+||
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~------r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD------RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecch------hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 568999999999999999999999999999875 122234468999999999999865 378999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
...+++....... ..++ .+.-++++..++.++ ++-|...|+++.+....
T Consensus 94 ~r~~k~~~~i~~~-----------------------------~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 94 IRSGKCTARIETK-----------------------------GENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred eccCcEEEEeecc-----------------------------Ccce-EEEEcCCCCEEEEecCcccEEEEEecccceeeh
Confidence 9876554322110 1122 233345555555554 56788889988776554
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceE-EecCCcEEE---Eee---cCccccCCC
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAI-MGAADAVRR---VAA---KGGFGDDNR 420 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~-~g~~~~v~~---v~~---~g~~~~~~~ 420 (842)
.+..-.+ +-.. |... .+.+ +....|... +.. -..+..|..
T Consensus 144 ~~~~~e~-ne~~-----------------w~~~---------------nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s 190 (313)
T KOG1407|consen 144 EQFKFEV-NEIS-----------------WNNS---------------NDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS 190 (313)
T ss_pred hccccee-eeee-----------------ecCC---------------CCEEEEecCCceEEEEeccccccccccccCCc
Confidence 4321111 0000 1100 0011 111112111 111 123445777
Q ss_pred ceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cccccccc
Q 003171 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (842)
...++.|+|+|+ +++|+.|-.+-|||+ +--|++.|.-+..+|..|++ ||++||+||+|..|-|=+++ |..+...
T Consensus 191 nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI- 269 (313)
T KOG1407|consen 191 NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI- 269 (313)
T ss_pred ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-
Confidence 788899999998 899999999999999 67899999999999998876 89999999999999999987 6544433
Q ss_pred ccccCEEEEEeCCCE
Q 003171 496 AHSSPVIKMAVGAGY 510 (842)
Q Consensus 496 gH~~~V~sla~dg~~ 510 (842)
-|.++-.+|++++++
T Consensus 270 ~~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 270 PCEGPTFTVAWHPKR 284 (313)
T ss_pred eccCCceeEEecCCC
Confidence 477888999988774
No 91
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.79 E-value=2e-18 Score=186.60 Aligned_cols=258 Identities=13% Similarity=0.148 Sum_probs=168.7
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~ 227 (842)
|.|+.|+|||+-. ...| . ..| .+| ..+|..+.|+++|..+.|+|+|+++|+||.++|
T Consensus 234 gmD~~vklW~vy~--~~~~------------l--rtf--~gH-~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG---- 290 (503)
T KOG0282|consen 234 GMDGLVKLWNVYD--DRRC------------L--RTF--KGH-RKPVRDASFNNCGTSFLSASFDRFLKLWDTETG---- 290 (503)
T ss_pred CCCceEEEEEEec--Ccce------------e--hhh--hcc-hhhhhhhhccccCCeeeeeecceeeeeeccccc----
Confidence 5699999999854 1222 1 113 345 789999999999999999999999999999998
Q ss_pred CCCcceeEEecccC-CcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceecc
Q 003171 228 DDGFGEVLSWQAHR-GPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (842)
Q Consensus 228 ~~~~~~~~~l~gH~-~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~ 304 (842)
++...+ |. ..++++.|.||+. +++|..|+.|+.||..+++-.-.+ .+++
T Consensus 291 ----~~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY---d~hL------------------- 342 (503)
T KOG0282|consen 291 ----QVLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY---DRHL------------------- 342 (503)
T ss_pred ----eEEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH---Hhhh-------------------
Confidence 555444 43 4678999999994 679999999999999876522111 1111
Q ss_pred ceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCce-EeeeecccCCCcccccceEEEEEecCCC
Q 003171 305 GFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQI-ENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (842)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (842)
..+..+.+-+.+.+..+++ +++++||+......++-..-..+. .-.+...+.......+.+
T Consensus 343 -------g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~---------- 405 (503)
T KOG0282|consen 343 -------GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM---------- 405 (503)
T ss_pred -------hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----------
Confidence 1233344455667777766 479999999888776533211111 001111111111110000
Q ss_pred CccceeeeEeecCcceEEecCCcEEEEeecCccccCC--CceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecC
Q 003171 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN--RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL 458 (842)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~--~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H 458 (842)
...+.+-....-.+.+.+-.|.+|. +.-..+.|||||. |++|..||.+.+||- +-+.+..+++|
T Consensus 406 ------------dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 406 ------------DNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred ------------CceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence 0000111111111222223344443 2334578999998 899999999999999 67889999999
Q ss_pred CccEEEEEec---CCEEEEEecCcEEEEEe
Q 003171 459 PFAVQCLCTF---GSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 459 ~~~V~sls~d---G~~LasGs~DgtIrlWD 485 (842)
..++..+... ...+|+++.||.|++||
T Consensus 474 ~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 474 DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CcceEEEEecCCCcceeEecccCceeEecC
Confidence 9998887652 45999999999999997
No 92
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.6e-18 Score=182.55 Aligned_cols=207 Identities=16% Similarity=0.302 Sum_probs=158.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|++.+|.|.+|+.|+-.|.|.+|.+.+| ..+..|.+|..+|+++.|+.||. |+|||.||.|.+|.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG--------~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSG--------ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccc--------cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence 468999999999999999999999999999998 67778899999999999999998 789999999999987
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEee
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~ 349 (842)
.+ +++...+. +-+++..|.
T Consensus 153 ~~---------------------------------------------lv~a~~~~----------------~~~p~~~f~ 171 (476)
T KOG0646|consen 153 TD---------------------------------------------LVSADNDH----------------SVKPLHIFS 171 (476)
T ss_pred Ee---------------------------------------------ecccccCC----------------Cccceeeec
Confidence 22 01100000 011112222
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC-
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS- 428 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s- 428 (842)
.|. -.|..+.+.
T Consensus 172 ~Ht-------------------------------------------------------------------lsITDl~ig~ 184 (476)
T KOG0646|consen 172 DHT-------------------------------------------------------------------LSITDLQIGS 184 (476)
T ss_pred cCc-------------------------------------------------------------------ceeEEEEecC
Confidence 221 112222222
Q ss_pred --CCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEec--CCEEEEEecCcEEEEEeCC----------------
Q 003171 429 --IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE---------------- 487 (842)
Q Consensus 429 --~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~---------------- 487 (842)
.+++|+|+|.|.++|+||+ .|.++.++.- ...++++..| ++++++|+.+|.|.+-++.
T Consensus 185 Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 185 GGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred CCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc
Confidence 2457999999999999999 6888887754 5678888765 6799999999999888742
Q ss_pred -Cccccccccccc--CEEEEE--eCCCEEEEEcCCCCeeeccccCCCCCcch
Q 003171 488 -GNLLGGWVAHSS--PVIKMA--VGAGYIFTLANHGGIRGWNVTSPGPLDSI 534 (842)
Q Consensus 488 -g~~i~~l~gH~~--~V~sla--~dg~~l~S~S~DgtIrvWd~~~~~~~d~~ 534 (842)
+..+..+.||.+ .|+|++ .||+.|+||+.||.|+|||+.+...+..+
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 124678999999 999988 59999999999999999998876555444
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.78 E-value=5.5e-17 Score=173.15 Aligned_cols=268 Identities=16% Similarity=0.161 Sum_probs=207.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
...+.++...|....+.||+.|.++.++|...+ +.+..++||+..|+++.|+|+.. ..++|.|..||||..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~--------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~ 290 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN--------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSV 290 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh--------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecc
Confidence 446777777777688999999999999999886 66778999999999999999987 679999999999998
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
..........+ | ...|+.+...+.+..+.+++ +++...-|.++|.++.+.
T Consensus 291 ~~~s~~~~~~~-------------------h----------~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v 341 (506)
T KOG0289|consen 291 PLSSEPTSSRP-------------------H----------EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVV 341 (506)
T ss_pred ccccCcccccc-------------------c----------cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEE
Confidence 55321111111 1 34566666666666555554 678889999999887665
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee------cCccccCCCce
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------KGGFGDDNRRT 422 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------~g~~~~~~~~v 422 (842)
..... +....+..|.+++....+|+.+++.++|. ...|.+|...|
T Consensus 342 s~~~s-----------------------------~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 342 SDETS-----------------------------DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV 392 (506)
T ss_pred eeccc-----------------------------cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCce
Confidence 43211 11223456777777778889999999886 24688899999
Q ss_pred EEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCC-ccEEEEEec--CCEEEEEecCcEEEEEeCC---Ccccccc
Q 003171 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLP-FAVQCLCTF--GSQIWVGYMNGIVQVLDLE---GNLLGGW 494 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~-~~V~sls~d--G~~LasGs~DgtIrlWD~~---g~~i~~l 494 (842)
.++.|+.+|+ |++++.|+.|++||+ .-+..+++.... ..|.++++| |++|++++.|=+|.+.+-. .+++..+
T Consensus 393 k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 393 KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred eEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh
Confidence 9999999999 899999999999999 567777776433 468888875 8899999888777777743 4578889
Q ss_pred cccccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 495 VAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 495 ~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
.-|++..+++.+ +.++++++|-|...|+..
T Consensus 473 ~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 473 ADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred hhcccccceeeecccceEEeeccchhheEEee
Confidence 999999999986 567899999999988764
No 94
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.7e-17 Score=175.82 Aligned_cols=257 Identities=11% Similarity=0.064 Sum_probs=167.0
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~ 227 (842)
+.|.+.-+|.+..-..... -++-..| ..+|.-+.||||.++|++++.|..+++||+.+|
T Consensus 243 SkD~Taiiw~v~~d~~~kl----------------~~tlvgh-~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg---- 301 (519)
T KOG0293|consen 243 SKDSTAIIWIVVYDVHFKL----------------KKTLVGH-SQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG---- 301 (519)
T ss_pred cCCceEEEEEEecCcceee----------------eeeeecc-cCceEEEEECCCCCeEEecCchHheeeccCCcc----
Confidence 4599999998742111100 0111223 789999999999999999999999999999998
Q ss_pred CCCcceeEEe-cccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccc-eeecCCCceeeeEEEEeeceeecccceecc
Q 003171 228 DDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEK-ALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (842)
Q Consensus 228 ~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~-~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~ 304 (842)
...+.+ .+|...|.|+++.|||. +++||.|++|..||++.... ....
T Consensus 302 ----d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~g-------------------------- 351 (519)
T KOG0293|consen 302 ----DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEG-------------------------- 351 (519)
T ss_pred ----hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccc--------------------------
Confidence 333332 45678999999999997 99999999999999976321 1110
Q ss_pred ceeeeecCCEEEEEEcCCCCEEEEe-CCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCC
Q 003171 305 GFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (842)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~v~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~ 383 (842)
+..+.+..++..++|..|... .|..|++++.++...++..+-+ +...+..++.+... .++.-..
T Consensus 352 ----vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d~k~--------~LvnL~~-- 416 (519)
T KOG0293|consen 352 ----VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKDGKL--------ALVNLQD-- 416 (519)
T ss_pred ----cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc-CceeEEEEcCCCcE--------EEEEccc--
Confidence 012456678877777766554 4788999999887665433222 22223333222211 1111100
Q ss_pred ccceeeeEeecCc----ceEEecCCcEEEEeecCccccCCCceEEEEECC-C-CcEEEEeCCCeEEEEcC-CCCeeeeee
Q 003171 384 KAQSSFGFFQRSR----NAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI-D-GMIWTGGANGLLLQWDP-NGNRLQDFQ 456 (842)
Q Consensus 384 ~~~~s~~~~~~~~----~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~-d-g~l~Sgs~DgtIrlWD~-~g~~l~~l~ 456 (842)
..+..|+-.. ....|+.-+- .+..-.|.- + .-++|||+|+.|++|+. +|+.+.++.
T Consensus 417 ---qei~LWDl~e~~lv~kY~Ghkq~~--------------fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls 479 (519)
T KOG0293|consen 417 ---QEIHLWDLEENKLVRKYFGHKQGH--------------FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS 479 (519)
T ss_pred ---CeeEEeecchhhHHHHhhcccccc--------------eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec
Confidence 0011121110 1112222111 111112222 2 23899999999999999 899999999
Q ss_pred cCCccEEEEEe---cCCEEEEEecCcEEEEEeCC
Q 003171 457 YLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 457 ~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~ 487 (842)
||+..|+|++. +..++|||+.|||||||-..
T Consensus 480 GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 480 GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999985 45699999999999999764
No 95
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=3.4e-17 Score=177.45 Aligned_cols=221 Identities=20% Similarity=0.279 Sum_probs=163.6
Q ss_pred CCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 003171 142 EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWK 219 (842)
Q Consensus 142 ~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd-g~~LaSGs~DGtIrlWd 219 (842)
+..|.+|. .|.|+|+|..+- ..-. .+. .| ..||..+.|+|+ +.++++|+.|+.+++||
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r-~iLR----------------~~~--ah-~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSR-VILR----------------QLY--AH-QAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred CeEEEccCCcCcEEEeccccH-HHHH----------------HHh--hc-cCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 44444444 579999996541 1110 111 23 778999999985 57888899999999999
Q ss_pred CCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCc-cceeecCCCceeeeEEEEeeceee
Q 003171 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAI-EKALSLKPEERHTAALIVERSYID 296 (842)
Q Consensus 220 l~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~-~~~l~~~~~~~~~~~l~~~~s~~~ 296 (842)
+.+. .....+.||++.|.|.+++|-.. ++|||.||+||+||+.+. ....++.
T Consensus 140 ~s~a--------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln----------------- 194 (487)
T KOG0310|consen 140 LSTA--------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN----------------- 194 (487)
T ss_pred cCCc--------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-----------------
Confidence 9996 44668999999999999999654 689999999999999663 2222221
Q ss_pred cccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEE
Q 003171 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (842)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (842)
| .-.|..+++-++|..|++++...+++||+.+|..+.+.
T Consensus 195 ---h----------g~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~---------------------------- 233 (487)
T KOG0310|consen 195 ---H----------GCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS---------------------------- 233 (487)
T ss_pred ---C----------CCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh----------------------------
Confidence 1 11345566667788999999899999999876431110
Q ss_pred EecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeee
Q 003171 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQD 454 (842)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~ 454 (842)
+..|.+.|+++.+..+++ |+||+-|+.||++|. +-+.+..
T Consensus 234 --------------------------------------~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s 275 (487)
T KOG0310|consen 234 --------------------------------------MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS 275 (487)
T ss_pred --------------------------------------hhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEe
Confidence 123667788888877776 999999999999998 5677777
Q ss_pred eecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC
Q 003171 455 FQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 455 l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (842)
+. -.++|.+++ ++++.++.|-.+|.+-+-+..
T Consensus 276 ~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 276 WK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred ee-cccceeeEEecCCCceEEEecccceeeeehhh
Confidence 75 478999875 577899999999998777544
No 96
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.77 E-value=2e-16 Score=176.66 Aligned_cols=385 Identities=13% Similarity=0.112 Sum_probs=224.2
Q ss_pred EEecCCEEEE-ecCCCEEEEeCCCCccccc-cccccccCC--CCCCCCCCeeeeeec-CCCeEEEEEcCCCCEEEEEeCC
Q 003171 138 IVCTEEQLWA-GGENGLRVWNLKELYDESE-SDSVSVSKS--KGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 138 l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~g-~~~V~~la~dpdg~~LaSGs~D 212 (842)
|....+.++. ..++.||+++.++....+. -.+-.+|.. .+-+....+.++-.+ -.-..++.||+....|..-..|
T Consensus 266 IcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYnd 345 (1080)
T KOG1408|consen 266 ICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYND 345 (1080)
T ss_pred eeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcC
Confidence 3344544443 5799999999877643321 000011110 011111111111111 1224578899999999999999
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec------------CCCEEEeeCCCcEEEEeCCCccceeecC-
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS------------YGDLWSGSEGGGIKIWPWEAIEKALSLK- 279 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~------------dG~L~SgS~DgtIrvWd~~t~~~~l~~~- 279 (842)
..+.+||+..- +.......+.-|...|++|---| .+-+.|+|.|+|||||+++.....-.+.
T Consensus 346 hSlYvWDvrD~-----~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrR 420 (1080)
T KOG1408|consen 346 HSLYVWDVRDV-----NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRR 420 (1080)
T ss_pred ceEEEEecccc-----ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeec
Confidence 99999999874 33344566778999999885544 2447899999999999997622111100
Q ss_pred -CCceeeeEEEEeec-eeec--cc--ceeccce-eeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecC
Q 003171 280 -PEERHTAALIVERS-YIDL--RS--HLSVNGF-SSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNID 351 (842)
Q Consensus 280 -~~~~~~~~l~~~~s-~~~l--~~--~~~~~~~-~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~ 351 (842)
.-...+....++.+ ...+ .+ ....+++ ..-+-..+++++.++++..+++|.- ++++++|+..-+.+.....|
T Consensus 421 Nils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH 500 (1080)
T KOG1408|consen 421 NILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH 500 (1080)
T ss_pred ccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc
Confidence 00000000000000 0000 00 0000011 0012346899999999999998874 68999999876665555555
Q ss_pred CceEeeeecccCCC---c--ccccceEEEEEecCC----------CCccceeeeEeecCc--ceEEecCCc--EEEEee-
Q 003171 352 GQIENRVDMSLLPD---F--AMEDEFKTKIVTSSK----------KDKAQSSFGFFQRSR--NAIMGAADA--VRRVAA- 411 (842)
Q Consensus 352 ~~~~~~~~~s~~~~---~--~~~~~~~~~~~s~~~----------~~~~~~s~~~~~~~~--~~~~g~~~~--v~~v~~- 411 (842)
...+-.+.++.... . +...+..+.++...+ ...++.++.|--.+. +.+.-.+|. .+|++.
T Consensus 501 esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk 580 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQK 580 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcc
Confidence 44332333322100 0 000000011111110 111233455554442 222222222 122222
Q ss_pred --cC-ccccCC-----CceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeec---CCccEEEE--EecCCEEEEEe
Q 003171 412 --KG-GFGDDN-----RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY---LPFAVQCL--CTFGSQIWVGY 476 (842)
Q Consensus 412 --~g-~~~~~~-----~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~---H~~~V~sl--s~dG~~LasGs 476 (842)
.| .|..+. ..+..++..|.-. +++++.|..||++|+ +|+..+.|++ |.+..-.+ .|.|-|||+.+
T Consensus 581 ~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc 660 (1080)
T KOG1408|consen 581 ASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC 660 (1080)
T ss_pred ccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee
Confidence 12 233332 2455677878765 799999999999999 7999999986 43333333 56788999999
Q ss_pred cCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 477 MNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 477 ~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.|++|.++|.- |+|+..+.||...|+.+.+ |-+.|+|+|.||.|-+|.+..
T Consensus 661 sdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 661 SDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 99999999975 9999999999999999985 788999999999999999643
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=1.6e-16 Score=163.10 Aligned_cols=256 Identities=19% Similarity=0.252 Sum_probs=155.0
Q ss_pred eeEEEEecC--CEEE-Ee-cCCCEEEEeCCCC-ccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE
Q 003171 134 FLRTIVCTE--EQLW-AG-GENGLRVWNLKEL-YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~~--~~l~-~~-~D~~vrvWdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS 208 (842)
.|..|+++. ..+. +| -|++||+|+++.. ... +.+ ..-+ .+||+|++|+.||..+++
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~---------------~ka---~~~~-~~PvL~v~WsddgskVf~ 89 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV---------------PKA---QQSH-DGPVLDVCWSDDGSKVFS 89 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCccc---------------chh---hhcc-CCCeEEEEEccCCceEEe
Confidence 455666653 2444 44 4999999999752 111 111 1112 789999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC---EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~---L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
|+-|+.+++||+.++ +..+...|.++|.++.|-+... |+|||+|+|||.||........++...+
T Consensus 90 g~~Dk~~k~wDL~S~---------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--- 157 (347)
T KOG0647|consen 90 GGCDKQAKLWDLASG---------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--- 157 (347)
T ss_pred eccCCceEEEEccCC---------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc---
Confidence 999999999999995 4677889999999999987543 7899999999999996533222221111
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCC
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (842)
++.+.+-... .|.+..++.|.+++++.+.... .... ++.
T Consensus 158 -----------------------------RvYa~Dv~~pm~vVata~r~i~vynL~n~~te~--k~~~--------SpL- 197 (347)
T KOG0647|consen 158 -----------------------------RVYAADVLYPMAVVATAERHIAVYNLENPPTEF--KRIE--------SPL- 197 (347)
T ss_pred -----------------------------eeeehhccCceeEEEecCCcEEEEEcCCCcchh--hhhc--------Ccc-
Confidence 1111111111 2223345788899887653211 0000 000
Q ss_pred CcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEe---e---cC--ccc---------cCCCceEEEEE
Q 003171 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA---A---KG--GFG---------DDNRRTEALTT 427 (842)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~---~---~g--~~~---------~~~~~v~al~~ 427 (842)
+ -...+++.+++....++|+-.|-..+. . +. +|. .....|.+++|
T Consensus 198 --------k----------~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 198 --------K----------WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred --------c----------ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence 0 001133444443333444433322211 1 00 011 11334566888
Q ss_pred CCC-CcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEE-EEEecC
Q 003171 428 SID-GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQI-WVGYMN 478 (842)
Q Consensus 428 s~d-g~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~L-asGs~D 478 (842)
.|. |.|++++.||+..+||- ....|++...|..+|.|-++ +|+++ ++.+.|
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 774 67899999999999998 45678888888999988766 56633 343333
No 98
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.76 E-value=3.8e-18 Score=181.13 Aligned_cols=258 Identities=16% Similarity=0.215 Sum_probs=183.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.+.|..+.|-++...|++|+.|..|++|+...+. .....+|.|-.++|+++.|.++++ ++++|.|+.+++|++
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k------~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK------SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccch------hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 6678888898888999999999999999988752 235667888889999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
+.....-++ .+| +.+|.++-+.-....|.+++ |.+||+||+..+.|.+++
T Consensus 249 d~~r~~~TL-------------------sGH----------tdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 249 DSLRLRHTL-------------------SGH----------TDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred cchhhhhhh-------------------ccc----------ccceeeehhhccccceeeccccchhhhhhhhhhheeccc
Confidence 764321111 122 34444444443444477777 689999999998887664
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
-+-.+. ..++.+
T Consensus 300 l~~S~c--------------------------------------------------------------------nDI~~~ 311 (459)
T KOG0288|consen 300 LPGSQC--------------------------------------------------------------------NDIVCS 311 (459)
T ss_pred cccccc--------------------------------------------------------------------cceEec
Confidence 321110 011111
Q ss_pred CCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCCCc-cccccc------ccc
Q 003171 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEGN-LLGGWV------AHS 498 (842)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g~-~i~~l~------gH~ 498 (842)
.-.++||+.|++||+||. .+.+++....|. .|+++ +++|..|.+.+.|.++.+.|+.+. ..+++. +|.
T Consensus 312 -~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 312 -ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred -ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc
Confidence 113688999999999998 678888887766 89987 468889999999999999999864 334443 343
Q ss_pred cCEEEEEeCCCEEEEEcCCCCeeeccccCCCCCcchhhhhhcccccccccccceeEEEEEEEeCCC
Q 003171 499 SPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQG 564 (842)
Q Consensus 499 ~~V~sla~dg~~l~S~S~DgtIrvWd~~~~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~~~ 564 (842)
-.-..+++|+.|+++||.||.|.||++.+... ...+. .. ..+.-|+...||-.+.
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKl-E~~l~----~s------~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKL-EKVLS----LS------TSNAAITSLSWNPSGS 444 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCceE-EEEec----cC------CCCcceEEEEEcCCCc
Confidence 21222347999999999999999999866322 22211 11 0111489999998654
No 99
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.76 E-value=2.5e-17 Score=182.84 Aligned_cols=304 Identities=15% Similarity=0.169 Sum_probs=186.1
Q ss_pred EEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeee-eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003171 144 QLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE-SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (842)
Q Consensus 144 ~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~ 221 (842)
.|+.+ +||.|.++|........ |+ ..|+. ..| .++|..+.+-|....|++++-|.+||.||+.
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~-------------ee-~~lk~~~aH-~nAifDl~wapge~~lVsasGDsT~r~Wdvk 130 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRL-------------EE-RQLKKPLAH-KNAIFDLKWAPGESLLVSASGDSTIRPWDVK 130 (720)
T ss_pred eEEEecCCCceeeecchhhhcch-------------hh-hhhcccccc-cceeEeeccCCCceeEEEccCCceeeeeeec
Confidence 34444 58999999986432210 11 11222 244 8899999999977889999999999999999
Q ss_pred CCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccc-eeec---CCCceeeeEEEEeecee
Q 003171 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEK-ALSL---KPEERHTAALIVERSYI 295 (842)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~-~l~~---~~~~~~~~~l~~~~s~~ 295 (842)
++. +.....+.||++.|.++||.|+.. +++|+.||.|.|||+.-... .+.. .....+-.+ .......
T Consensus 131 ~s~------l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~-ptpskp~ 203 (720)
T KOG0321|consen 131 TSR------LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA-PTPSKPL 203 (720)
T ss_pred cce------eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC-CCCCchh
Confidence 862 122234899999999999999876 67999999999999853210 0000 000000000 0000000
Q ss_pred ecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceE
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (842)
.-+.+...+....+ ...|+.+++- +...|++++ |++|++||+++.........-+ . ...
T Consensus 204 ~kr~~k~kA~s~ti-~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~-~---------~~~------- 264 (720)
T KOG0321|consen 204 KKRIRKWKAASNTI-FSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRG-S---------DKY------- 264 (720)
T ss_pred hccccccccccCce-eeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCc-c---------cCc-------
Confidence 00001111111111 2236677775 455666655 6899999998765421111000 0 000
Q ss_pred EEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC-cEEEEeCCCeEEEEcCCC---
Q 003171 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPNG--- 449 (842)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~l~Sgs~DgtIrlWD~~g--- 449 (842)
-... .....+..|..+.-| +|.+.+.|++|.+|++.+
T Consensus 265 ---~t~s------------------------------------krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~ 305 (720)
T KOG0321|consen 265 ---PTHS------------------------------------KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI 305 (720)
T ss_pred ---cCcc------------------------------------cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc
Confidence 0000 001112233333334 466566699999999954
Q ss_pred CeeeeeecCCc---cEE-EEEecCCEEEEEecCcEEEEEeCC--CcccccccccccCEEEEEeCC---CEEEEEcCCCCe
Q 003171 450 NRLQDFQYLPF---AVQ-CLCTFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAVGA---GYIFTLANHGGI 520 (842)
Q Consensus 450 ~~l~~l~~H~~---~V~-sls~dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~dg---~~l~S~S~DgtI 520 (842)
..+..+.+|.. .|. ++++|+.+|++|+.|....+|.+. ......+.||+-.|+++.+.+ .-+++++.|-++
T Consensus 306 sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~ 385 (720)
T KOG0321|consen 306 SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRV 385 (720)
T ss_pred CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcce
Confidence 34455555443 233 347899999999999999999987 345788899999999998643 458899999999
Q ss_pred eeccccC
Q 003171 521 RGWNVTS 527 (842)
Q Consensus 521 rvWd~~~ 527 (842)
++|++..
T Consensus 386 kiW~l~~ 392 (720)
T KOG0321|consen 386 KIWRLSN 392 (720)
T ss_pred EEEeccC
Confidence 9999843
No 100
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.76 E-value=6.8e-16 Score=166.32 Aligned_cols=254 Identities=13% Similarity=0.115 Sum_probs=164.6
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~L-aSGs~DGtIrlWdl~~g~~~ 226 (842)
+.|+.|++||+.+...... + .+...+.+++++|+++.+ ++++.|++|++||..++
T Consensus 8 ~~d~~v~~~d~~t~~~~~~-----------------~----~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--- 63 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRT-----------------F----PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATG--- 63 (300)
T ss_pred cCCCEEEEEECCCCceEEE-----------------E----ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCC---
Confidence 5689999999876432211 1 112346779999999876 57788999999999886
Q ss_pred CCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceecc
Q 003171 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (842)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~ 304 (842)
+....+..|.. +..++|+|+|+ ++ +++.|+.|++||+.+......+..
T Consensus 64 -----~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~------------------------ 113 (300)
T TIGR03866 64 -----EVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV------------------------ 113 (300)
T ss_pred -----cEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC------------------------
Confidence 44555655544 46789999998 54 566799999999965321111100
Q ss_pred ceeeeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCC
Q 003171 305 GFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (842)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (842)
......++.++++..++.+.. ..+.+||..+++++..+...
T Consensus 114 ------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~------------------------------- 156 (300)
T TIGR03866 114 ------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD------------------------------- 156 (300)
T ss_pred ------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-------------------------------
Confidence 011234566677777666553 24667788766543221100
Q ss_pred CccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEE-eCCCeEEEEcC-CCCeeeeeecCC
Q 003171 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG-GANGLLLQWDP-NGNRLQDFQYLP 459 (842)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sg-s~DgtIrlWD~-~g~~l~~l~~H~ 459 (842)
.....++++++|+ ++.+ ..++.|++||+ ++++++.+..+.
T Consensus 157 -------------------------------------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 199 (300)
T TIGR03866 157 -------------------------------------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI 199 (300)
T ss_pred -------------------------------------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence 0112466788887 5444 46899999999 677777665332
Q ss_pred -----ccE--E--EEEecCCEEEEE-ecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEE-cCCCCeeeccc
Q 003171 460 -----FAV--Q--CLCTFGSQIWVG-YMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTL-ANHGGIRGWNV 525 (842)
Q Consensus 460 -----~~V--~--sls~dG~~LasG-s~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~-S~DgtIrvWd~ 525 (842)
..+ . +++++|++++++ +.+++|.+||++ ++.+..+ .+...+.+++ +++++|+++ +.++.|++||+
T Consensus 200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 111 1 245688876654 456789999987 5555443 3445687877 488888876 56999999998
Q ss_pred cCCCC
Q 003171 526 TSPGP 530 (842)
Q Consensus 526 ~~~~~ 530 (842)
.+..+
T Consensus 279 ~~~~~ 283 (300)
T TIGR03866 279 AALKV 283 (300)
T ss_pred CCCcE
Confidence 76443
No 101
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=9.1e-16 Score=158.00 Aligned_cols=255 Identities=13% Similarity=0.204 Sum_probs=164.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec--CCC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~-L~SgS~DgtIrvW 267 (842)
..-|.|+.||+-|+.+||+|.|++++|||...+ ...+.+..+|+.|.+.|..|.+-+ .|+ ++++|.|+|++||
T Consensus 13 ~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~----s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD----SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cceeeeeeecccCceeeeccCCCcEEEEeccCC----CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 667999999999999999999999999997654 245677788999999999999864 488 6899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC--CCCEEEEeC-CCcEEEEEccCCcE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~--~~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
.=.. +....+. ......- ++.+- .+.|..+.+.+ -|-++++++ |+++|||++-.---
T Consensus 89 EE~~--~~~~~~~-~~Wv~~t----tl~Ds-------------rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n 148 (361)
T KOG2445|consen 89 EEQE--KSEEAHG-RRWVRRT----TLVDS-------------RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN 148 (361)
T ss_pred eecc--ccccccc-ceeEEEE----EeecC-------------CcceeEEEecchhcceEEEEeccCcEEEEEecCCccc
Confidence 7521 1111110 0111100 01111 23455555544 455777766 78899998743211
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
+...+....+ .... .... .+....-+
T Consensus 149 Ls~W~Lq~Ei------~~~~-------------~pp~-----------------------------------~~~~~~~C 174 (361)
T KOG2445|consen 149 LSQWTLQHEI------QNVI-------------DPPG-----------------------------------KNKQPCFC 174 (361)
T ss_pred cccchhhhhh------hhcc-------------CCcc-----------------------------------cccCcceE
Confidence 1111100000 0000 0000 00001111
Q ss_pred EEECC----CCcEEEEeCC-----CeEEEEcC--CC-C--eeeeeecCCccEEEEEe--c-CC---EEEEEecCcEEEEE
Q 003171 425 LTTSI----DGMIWTGGAN-----GLLLQWDP--NG-N--RLQDFQYLPFAVQCLCT--F-GS---QIWVGYMNGIVQVL 484 (842)
Q Consensus 425 l~~s~----dg~l~Sgs~D-----gtIrlWD~--~g-~--~l~~l~~H~~~V~sls~--d-G~---~LasGs~DgtIrlW 484 (842)
|.+.+ ...|+.|+.+ +.++||.- .+ + .+.++.+|+.+|+.|++ . |+ .||+++.|| |+||
T Consensus 175 vsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~ 253 (361)
T KOG2445|consen 175 VSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIF 253 (361)
T ss_pred EeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEE
Confidence 22221 1236666654 36888876 34 2 34567799999999864 2 54 899999999 9999
Q ss_pred eCCC---------------------cccccccccccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 485 DLEG---------------------NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 485 D~~g---------------------~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
.++. +.+..+..|.+.|+.+.+ -|..|.|.|.||.||+|.
T Consensus 254 ~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 254 KVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred EEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 9652 135568899999999996 588999999999999998
No 102
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.73 E-value=7.9e-16 Score=180.68 Aligned_cols=296 Identities=18% Similarity=0.151 Sum_probs=194.0
Q ss_pred eeEEEEecCC-EEEE--e--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE
Q 003171 134 FLRTIVCTEE-QLWA--G--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~~~-~l~~--~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS 208 (842)
.+.+|..+.+ ..++ | .|+++++|+.+....... .+....+...++..- +.++|.|+.|+|||++||+
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~-------~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKE-------EKNENLPKHLCTMDD-HDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhh-------hhhcccchhheeecc-ccCceeEEEECCCCCeEee
Confidence 3667777755 3333 3 589999999865332110 000000111122222 3889999999999999999
Q ss_pred EeCCCcEEEEECCCC----ccCC------CCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceee
Q 003171 209 GHRDGRIMCWKMNAR----LLDS------DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALS 277 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g----~~~~------~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~ 277 (842)
||.|+.|.+|..... .+.+ -...+....+.||.+-|..|+++|++. |+|+|.|++|-||+..+.+..-.
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 999999999998731 1100 113456678899999999999999998 78999999999999876522111
Q ss_pred cCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEe
Q 003171 278 LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIEN 356 (842)
Q Consensus 278 ~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~ 356 (842)
+++| .+.|+-+..++-|..+++-+ |++|++|++.+-.+.+....+-+
T Consensus 167 -------------------l~~H----------~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~--- 214 (942)
T KOG0973|consen 167 -------------------LRGH----------QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE--- 214 (942)
T ss_pred -------------------eecc----------cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh---
Confidence 2233 45677888899998888877 57999999654333332221100
Q ss_pred eeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEE
Q 003171 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWT 435 (842)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~S 435 (842)
.. +. .-...-+.+||||+ |++
T Consensus 215 ----------------------~~--------------------~~----------------~T~f~RlSWSPDG~~las 236 (942)
T KOG0973|consen 215 ----------------------ES--------------------PL----------------TTFFLRLSWSPDGHHLAS 236 (942)
T ss_pred ----------------------hC--------------------CC----------------cceeeecccCCCcCeecc
Confidence 00 00 00012245778877 444
Q ss_pred EeC----CCeEEEEcC-CCCeeeeeecCCccEEEEEec----------C-----C----EEEEEecCcEEEEEeCC-Ccc
Q 003171 436 GGA----NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF----------G-----S----QIWVGYMNGIVQVLDLE-GNL 490 (842)
Q Consensus 436 gs~----DgtIrlWD~-~g~~l~~l~~H~~~V~sls~d----------G-----~----~LasGs~DgtIrlWD~~-g~~ 490 (842)
... -.++.|.+- +-++-..|.||..++.++.+. | . .+|+|+.|++|-||... -++
T Consensus 237 ~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 237 PNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred hhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence 321 125666666 335667788999998887542 1 1 57899999999999985 343
Q ss_pred c-ccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 491 L-GGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 491 i-~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+ ....--...|..+++ ||-.|+.+|.||+|.+..++.
T Consensus 317 l~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 317 LFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred hhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 2 222333567888885 788999999999999998643
No 103
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.2e-15 Score=167.57 Aligned_cols=279 Identities=16% Similarity=0.234 Sum_probs=206.9
Q ss_pred eeEEEEec--CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec--CCCeEEEEEcCCCCEEEE
Q 003171 134 FLRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG--VSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~V~~la~dpdg~~LaS 208 (842)
.++++|.. .++|.+| +|+.|-+||+....... ..++| .+.|-.++|. +++.|+|
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--------------------~vi~g~~drsIE~L~W~-e~~RLFS 85 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--------------------PVIHGPEDRSIESLAWA-EGGRLFS 85 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceee--------------------EEEecCCCCceeeEEEc-cCCeEEe
Confidence 47788876 3366665 59999999997543221 11233 6789999999 6788999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeE
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
.+-+|+|--||+.++ +.......-.++|++++.+|.+. ++.|++||.+...+...+. +++..
T Consensus 86 ~g~sg~i~EwDl~~l--------k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~--I~~~r------- 148 (691)
T KOG2048|consen 86 SGLSGSITEWDLHTL--------KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK--ITYKR------- 148 (691)
T ss_pred ecCCceEEEEecccC--------ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce--EEEEe-------
Confidence 999999999999997 66666777789999999999887 7789999977766664322 22210
Q ss_pred EEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
.+- ...+.+.++...+++.+|++|+. +-|++||+.++..+..... +.
T Consensus 149 -----~l~-------------rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~--~~------------ 196 (691)
T KOG2048|consen 149 -----SLM-------------RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM--QL------------ 196 (691)
T ss_pred -----ecc-------------cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee--cc------------
Confidence 000 01345778888888888998884 5599999998876542111 00
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEc
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWD 446 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD 446 (842)
...++ +..-.|.+|.+-.|++|++|..-|+|++||
T Consensus 197 -----------d~l~k----------------------------------~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 197 -----------DRLSK----------------------------------REPTIVWSVLFLRDSTIASGDSAGTVTFWD 231 (691)
T ss_pred -----------ccccc----------------------------------CCceEEEEEEEeecCcEEEecCCceEEEEc
Confidence 00000 011234567777899999999999999999
Q ss_pred C-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCc-----ccccccccccCEEEEEeCCCEEEEEcCCC
Q 003171 447 P-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGN-----LLGGWVAHSSPVIKMAVGAGYIFTLANHG 518 (842)
Q Consensus 447 ~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~-----~i~~l~gH~~~V~sla~dg~~l~S~S~Dg 518 (842)
. .|.+++.+..|...|.|++. ++.++.+++.|+.|-.+-.+++ ......+|...|.+++.-+..++||+.|.
T Consensus 232 ~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~ 311 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDF 311 (691)
T ss_pred ccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceee
Confidence 9 79999999999999999976 4679999999999999987643 23445689999999997667999999999
Q ss_pred CeeeccccC
Q 003171 519 GIRGWNVTS 527 (842)
Q Consensus 519 tIrvWd~~~ 527 (842)
++-+=..+.
T Consensus 312 ~l~i~~s~~ 320 (691)
T KOG2048|consen 312 TLAICSSRE 320 (691)
T ss_pred EEEEccccc
Confidence 998766554
No 104
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=7.5e-16 Score=158.92 Aligned_cols=286 Identities=18% Similarity=0.153 Sum_probs=168.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc--cCCcEEEEEEecCCC--EEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA--HRGPVLSLCISSYGD--LWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g--H~~~V~slafs~dG~--L~SgS~DgtIrv 266 (842)
...|+||+|+.||+.|+|.+.|++||+|++..=. + ++-+.++. ..+--+.|+|+||-+ +++.-...++++
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~----~--~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE----N--KEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCCceEEEEecchhh----h--hhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 7799999999999999999999999999986521 0 01011110 112357889999987 467778889999
Q ss_pred EeCCCccc-eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE
Q 003171 267 WPWEAIEK-ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 267 Wd~~t~~~-~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
+.+...+. .++++. .+ +| .+ + +.-.+.-++..+-...++..|.+++ +.+|.|||++ |+.
T Consensus 160 yk~~K~~dG~~~~~~--v~----------~D--~~-~---f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~ 220 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHF--VH----------ID--NL-E---FERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL 220 (420)
T ss_pred EEeeecccCCCCccc--cc----------cc--cc-c---cchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce
Confidence 98743211 111110 00 00 00 0 0000112233344444455566666 5689999999 888
Q ss_pred EEEeecCCceEeeeecccCCCcc----cccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCC
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFA----MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~----~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~ 420 (842)
+.+............+++...+. +-.++++| ... |-.+ |+-..+.|+ -.+.+|..
T Consensus 221 L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVw--E~~----------f~kd------G~fqev~rv---f~LkGH~s 279 (420)
T KOG2096|consen 221 LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVW--EPI----------FTKD------GTFQEVKRV---FSLKGHQS 279 (420)
T ss_pred eeeeccccccccceeeCCCCcEEEEecCCCCceEE--EEE----------eccC------cchhhhhhh---heeccchh
Confidence 77653221110111223322211 11111111 000 0000 000001111 12456888
Q ss_pred ceEEEEECCCCc-EEEEeCCCeEEEEcCC-----CC---eeeeee-----cCCccEE-EEEecCCEEEEEecCcEEEEEe
Q 003171 421 RTEALTTSIDGM-IWTGGANGLLLQWDPN-----GN---RLQDFQ-----YLPFAVQ-CLCTFGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~DgtIrlWD~~-----g~---~l~~l~-----~H~~~V~-sls~dG~~LasGs~DgtIrlWD 485 (842)
.|.+++||++.+ +++.|.||++|+||.+ ++ .+++.. ....++. +++|.|+.||. +...+|+++.
T Consensus 280 aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~ 358 (420)
T KOG2096|consen 280 AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV-SFGSDLKVFA 358 (420)
T ss_pred heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe-ecCCceEEEE
Confidence 999999999987 8999999999999974 22 333331 1233443 67889998887 4567899999
Q ss_pred CC-Ccccccc-cccccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 486 LE-GNLLGGW-VAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 486 ~~-g~~i~~l-~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
.+ |+-.-.+ ..|...|.+|++ +|++++|++ |.-+|+..
T Consensus 359 se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 359 SEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 87 7654444 579999999984 789999987 66777754
No 105
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.73 E-value=1.5e-16 Score=163.30 Aligned_cols=284 Identities=14% Similarity=0.212 Sum_probs=177.2
Q ss_pred eeEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCC-Ceeee--eecCCCeEEEEEcCCCCEEE
Q 003171 134 FLRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTA-PFKES--VKGVSSVMCMVGDEASGVVW 207 (842)
Q Consensus 134 ~~~~l~~~~~-~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~g~~~V~~la~dpdg~~La 207 (842)
..|+-++..+ +|++ +.|..|++.|.+....... ..-.-.|++.+. |.... -| ..+|.+|.|.|...+|+
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~----~~em~~~~~qa~hPvIRTlYDH-~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK----PKEMISGDTQARHPVIRTLYDH-VDEVNDLDFHPRETILI 188 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc----hhhhccCCcccCCceEeehhhc-cCcccceeecchhheEE
Confidence 3444555544 6666 5699999999963211000 000112333322 32111 23 77999999999999999
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeee
Q 003171 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (842)
Q Consensus 208 SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~ 286 (842)
||+.|++||++|..... .+.....-.-..+|.+|.|.|.|. |+.|.+--++||+|+++.++-++..+...|
T Consensus 189 S~srD~tvKlFDfsK~s------aKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh-- 260 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTS------AKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH-- 260 (430)
T ss_pred eccCCCeEEEEecccHH------HHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc--
Confidence 99999999999987641 111111112356899999999999 678999999999999886544433333222
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEee-cCCc-eEeeeecccC
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN-IDGQ-IENRVDMSLL 363 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~-~~~~-~~~~~~~s~~ 363 (842)
+..+.++-.++.+....+++ |+.|+|||-.+++|+.++. .|+. .+.+
T Consensus 261 ------------------------t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcS------ 310 (430)
T KOG0640|consen 261 ------------------------TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCS------ 310 (430)
T ss_pred ------------------------ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeee------
Confidence 34566677777777777777 6789999999999988874 2322 1111
Q ss_pred CCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccC--CC----ceEEEEECC-C
Q 003171 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDD--NR----RTEALTTSI-D 430 (842)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~--~~----~v~al~~s~-d 430 (842)
..|..+++.++....|.+..+|. .| .+.+. .+ +..++ |.. .
T Consensus 311 -------------------------a~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAv-FNhtE 364 (430)
T KOG0640|consen 311 -------------------------AVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAV-FNHTE 364 (430)
T ss_pred -------------------------EEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhh-hcCcc
Confidence 22333444445555556666664 22 22221 11 11121 221 1
Q ss_pred CcEEEEe-CCCeEEEEcC-CCCeeeee-ecCCccEEEE--EecCCEEEEEecCcEEEEEeC
Q 003171 431 GMIWTGG-ANGLLLQWDP-NGNRLQDF-QYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 431 g~l~Sgs-~DgtIrlWD~-~g~~l~~l-~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~ 486 (842)
..++.-. ..+.+.-||. ++.++..+ .+|+++|.++ +|.+.-+.+|+.|..+|.|-.
T Consensus 365 dyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 365 DYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 2222211 2356889999 56544433 3799999998 567888999999999999964
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=1.5e-15 Score=156.01 Aligned_cols=257 Identities=16% Similarity=0.230 Sum_probs=164.4
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
...|.+|+||| ...+++.||.||+||+|+++... . -.....+.|.++|.+++|+.||. +++|+-|+.+|+||
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-----~-~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-----Q-LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCC-----c-ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 45799999999 56778899999999999998721 1 11244567999999999999997 67999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCC--CEEEEeC-CCcEEEEEccCCcEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR--AKVWSAG-FLSFALWDARTRELL 345 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~--~~v~s~s-~~tI~lWD~~tg~~l 345 (842)
+.+++... .- .| ...++.+..-+.. ..|.+++ |+|||.||.+...++
T Consensus 101 L~S~Q~~~-v~-------------------~H----------d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv 150 (347)
T KOG0647|consen 101 LASGQVSQ-VA-------------------AH----------DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV 150 (347)
T ss_pred ccCCCeee-ee-------------------ec----------ccceeEEEEecCCCcceeEecccccceeecccCCCCee
Confidence 98753211 10 01 2234444432222 3677788 479999999998887
Q ss_pred EEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCC-cEEEEeecC---cccc----
Q 003171 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAKG---GFGD---- 417 (842)
Q Consensus 346 ~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v~~v~~~g---~~~~---- 417 (842)
.++....... .+..... + +.++.++ ++..++..+ .+..
T Consensus 151 ~t~~LPeRvY---a~Dv~~p--------m-----------------------~vVata~r~i~vynL~n~~te~k~~~Sp 196 (347)
T KOG0647|consen 151 ATLQLPERVY---AADVLYP--------M-----------------------AVVATAERHIAVYNLENPPTEFKRIESP 196 (347)
T ss_pred eeeeccceee---ehhccCc--------e-----------------------eEEEecCCcEEEEEcCCCcchhhhhcCc
Confidence 7765543321 1100000 0 1111111 111111100 0111
Q ss_pred CCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CC--CeeeeeecCC---------ccEEEEEec--CCEEEEEecCcEEE
Q 003171 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG--NRLQDFQYLP---------FAVQCLCTF--GSQIWVGYMNGIVQ 482 (842)
Q Consensus 418 ~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g--~~l~~l~~H~---------~~V~sls~d--G~~LasGs~DgtIr 482 (842)
-...+++|+.-.|+. .+.|+-.|.+-+-.+ .+ +.--+|+.|. .+|++|++. -..|++++.||++.
T Consensus 197 Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~ 276 (347)
T KOG0647|consen 197 LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFS 276 (347)
T ss_pred ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEE
Confidence 112355666545544 588999999988888 44 3334566665 246666764 34888999999999
Q ss_pred EEeCCC-cccccccccccCEEEEEe--CCCEEE-EEcCC
Q 003171 483 VLDLEG-NLLGGWVAHSSPVIKMAV--GAGYIF-TLANH 517 (842)
Q Consensus 483 lWD~~g-~~i~~l~gH~~~V~sla~--dg~~l~-S~S~D 517 (842)
.||-.. .-+.+..-|..+|.+-.+ +|+.++ ..|.|
T Consensus 277 FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 277 FWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred EecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 999763 346777789999998775 666655 56666
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=5.5e-17 Score=166.70 Aligned_cols=259 Identities=14% Similarity=0.151 Sum_probs=173.3
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCc
Q 003171 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (842)
Q Consensus 204 ~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~ 282 (842)
..|+|.-+|++++. ...+.+.||++.|+.|+.....- +.|+|.|.|.+||.++++.+..++.+
T Consensus 125 srivssFk~~t~~~--------------~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-- 188 (481)
T KOG0300|consen 125 SRIVSSFKDGTVKF--------------RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-- 188 (481)
T ss_pred chheeeecCCceeE--------------eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc--
Confidence 45778888888532 44566889999999998876444 56999999999999999877665543
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecc
Q 003171 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMS 361 (842)
Q Consensus 283 ~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s 361 (842)
| .+.|.++.+.+.+..+.+++ |.+..||...-.-. ...
T Consensus 189 -----------------H----------~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~-----vP~--------- 227 (481)
T KOG0300|consen 189 -----------------H----------TGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE-----VPS--------- 227 (481)
T ss_pred -----------------c----------ccceeeEEeccccceEEEccCCcchHHHHHhhcCc-----CCC---------
Confidence 2 34577788888888877776 67888997532111 000
Q ss_pred cCCC--cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeC
Q 003171 362 LLPD--FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA 438 (842)
Q Consensus 362 ~~~~--~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~ 438 (842)
+++. .+.+++.. -+ ..... +.+ + -....+...|+.. -.|.+|...|.+..+-..|+ ++++|.
T Consensus 228 ~~a~~~hSsEeE~e---~s-De~~~------d~d-~---~~~sD~~tiRvPl-~~ltgH~~vV~a~dWL~gg~Q~vTaSW 292 (481)
T KOG0300|consen 228 NNAPSDHSSEEEEE---HS-DEHNR------DTD-S---SEKSDGHTIRVPL-MRLTGHRAVVSACDWLAGGQQMVTASW 292 (481)
T ss_pred CCCCCCCCchhhhh---cc-ccccc------ccc-c---ccccCCceeeeee-eeeeccccceEehhhhcCcceeeeeec
Confidence 0000 01111110 00 00000 000 0 0000111222221 12455666666655545554 999999
Q ss_pred CCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC--CcccccccccccCEEEEEe-CCCEEE
Q 003171 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV-GAGYIF 512 (842)
Q Consensus 439 DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~-dg~~l~ 512 (842)
|.+..+||+ +|+.++.+.||....+-.+. .-+.+++.+.|.|.||||.. -..+.+|+||++.|+++.+ -+..++
T Consensus 293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vV 372 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVV 372 (481)
T ss_pred cccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCcee
Confidence 999999999 79999999999998886654 44577788889999999986 2458899999999999876 567899
Q ss_pred EEcCCCCeeeccccC-CCCCcch
Q 003171 513 TLANHGGIRGWNVTS-PGPLDSI 534 (842)
Q Consensus 513 S~S~DgtIrvWd~~~-~~~~d~~ 534 (842)
|+|.|.+||+||+++ ..|+..+
T Consensus 373 SgSDDrTvKvWdLrNMRsplATI 395 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSPLATI 395 (481)
T ss_pred ecCCCceEEEeeeccccCcceee
Confidence 999999999999876 4455544
No 108
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.72 E-value=1.2e-16 Score=173.51 Aligned_cols=254 Identities=19% Similarity=0.242 Sum_probs=164.7
Q ss_pred eeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeec
Q 003171 233 EVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILT 311 (842)
Q Consensus 233 ~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s 311 (842)
+..++++|+..|+++++.|.|. |+|||.|.+|+.||++.....+..... + .....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~---------------l---------~P~E~ 214 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQ---------------L---------QPCET 214 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhc---------------c---------Ccccc
Confidence 3467899999999999999995 999999999999999764322211100 0 00012
Q ss_pred CCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeee
Q 003171 312 SDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFG 390 (842)
Q Consensus 312 ~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~ 390 (842)
..++.+..+..+..+.+.+ ...++|+|-.--+......++.-+. + ..
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~---D-----------------m~------------ 262 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIR---D-----------------MY------------ 262 (641)
T ss_pred cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhh---h-----------------hh------------
Confidence 3566677776666554443 2356677643323222222211110 0 00
Q ss_pred EeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEeCCCeEEEEcCC--CCeeeeeec-----CCcc
Q 003171 391 FFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPN--GNRLQDFQY-----LPFA 461 (842)
Q Consensus 391 ~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~~--g~~l~~l~~-----H~~~ 461 (842)
...+|...+.+..+.|+.+ +++++.||++|+||++ .+.++.|+. -.-+
T Consensus 263 -----------------------nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 263 -----------------------NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred -----------------------ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 0123444555666777654 8999999999999994 344555542 2223
Q ss_pred EEEE--EecCCEEEEEecCcEEEEEeCCCc----cccccccccc--CEEEEEe--CCCEEEEEcCCCCeeeccccCCC-C
Q 003171 462 VQCL--CTFGSQIWVGYMNGIVQVLDLEGN----LLGGWVAHSS--PVIKMAV--GAGYIFTLANHGGIRGWNVTSPG-P 530 (842)
Q Consensus 462 V~sl--s~dG~~LasGs~DgtIrlWD~~g~----~i~~l~gH~~--~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~-~ 530 (842)
|++. .+||+.||+|..||.|++||..+. -...-.+|.. .|+||.+ ||++|+|-|.|+++|+||++.+. |
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 4443 568999999999999999997532 2345568998 8999985 89999999999999999998754 3
Q ss_pred Ccch--hhhhhcccccccccccceeEEEEEEEeCCCCC
Q 003171 531 LDSI--LCKELAGKEFLYTRMENLKILAGTWNVGQGRA 566 (842)
Q Consensus 531 ~d~~--l~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~ 566 (842)
+... +.+.+..-.++|+....+ |+.||=-.++..+
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kl-i~TGtS~~~~~~~ 436 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKL-ILTGTSAPNGMTA 436 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceE-EEecccccCCCCC
Confidence 3322 234455556777777665 6777766665544
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.72 E-value=4e-15 Score=169.72 Aligned_cols=358 Identities=18% Similarity=0.277 Sum_probs=216.3
Q ss_pred EEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 003171 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL 224 (842)
Q Consensus 145 l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~ 224 (842)
+.-+++|.+++||+.+....-. |.+ . .+.|+|+.-+|.-..+|.|..+|+|.+.++..+
T Consensus 176 vvGs~~G~lql~Nvrt~K~v~~-----------------f~~--~-~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d- 234 (910)
T KOG1539|consen 176 VVGSSQGRLQLWNVRTGKVVYT-----------------FQE--F-FSRITAIEQSPALDVVAIGLENGTVIIFNLKFD- 234 (910)
T ss_pred EEeecCCcEEEEEeccCcEEEE-----------------ecc--c-ccceeEeccCCcceEEEEeccCceEEEEEcccC-
Confidence 3336799999999987554311 221 2 568999999999999999999999999999987
Q ss_pred cCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeeccccee
Q 003171 225 LDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLS 302 (842)
Q Consensus 225 ~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~ 302 (842)
+.+.+++--.+.|++++|.-||. |++|..-|.+-+||++......... .+|
T Consensus 235 -------kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~------------------nah-- 287 (910)
T KOG1539|consen 235 -------KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR------------------NAH-- 287 (910)
T ss_pred -------cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee------------------ccc--
Confidence 67888876579999999999997 7899999999999997633211110 011
Q ss_pred ccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccC--C--cEEEEeecCCceEeeeec---------ccCCCc--
Q 003171 303 VNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART--R--ELLKVFNIDGQIENRVDM---------SLLPDF-- 366 (842)
Q Consensus 303 ~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~t--g--~~l~~l~~~~~~~~~~~~---------s~~~~~-- 366 (842)
.+.+....+-++...+.+++ |+.+++|=..+ | ..++.=.+|.+.-..+.+ +...+.
T Consensus 288 --------~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~ 359 (910)
T KOG1539|consen 288 --------YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTL 359 (910)
T ss_pred --------cCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcch
Confidence 11111122222233333332 44555443332 2 112221222221100000 111111
Q ss_pred ---cc-----ccce-EEEEEecCCC----------CccceeeeEee-cC---cceEEecCCcE-EEEee-----cCc---
Q 003171 367 ---AM-----EDEF-KTKIVTSSKK----------DKAQSSFGFFQ-RS---RNAIMGAADAV-RRVAA-----KGG--- 414 (842)
Q Consensus 367 ---~~-----~~~~-~~~~~s~~~~----------~~~~~s~~~~~-~~---~~~~~g~~~~v-~~v~~-----~g~--- 414 (842)
++ .++. +.......++ ...+..+++.. +. .++++.|.+.. .+.|. .|.
T Consensus 360 r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L 439 (910)
T KOG1539|consen 360 RSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL 439 (910)
T ss_pred hhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe
Confidence 00 0000 0000000000 00000111110 00 13344443321 22222 122
Q ss_pred ----cccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeee---ecCCccEEEEEecCC--EEEEEecCcEEEE
Q 003171 415 ----FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF---QYLPFAVQCLCTFGS--QIWVGYMNGIVQV 483 (842)
Q Consensus 415 ----~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l---~~H~~~V~sls~dG~--~LasGs~DgtIrl 483 (842)
+......+.+++.++-|. .+.|+..|+|-++++ .|-....| ..|..+|+.++.|+. .+++++.+|.++.
T Consensus 440 ~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkf 519 (910)
T KOG1539|consen 440 DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKF 519 (910)
T ss_pred cCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEE
Confidence 222346788899999998 567888999999999 68777777 479999999999864 6999999999999
Q ss_pred EeCCCc------------------------------------------ccccccccccCEEEEE--eCCCEEEEEcCCCC
Q 003171 484 LDLEGN------------------------------------------LLGGWVAHSSPVIKMA--VGAGYIFTLANHGG 519 (842)
Q Consensus 484 WD~~g~------------------------------------------~i~~l~gH~~~V~sla--~dg~~l~S~S~Dgt 519 (842)
||.+++ .++.|.||++.|+.+. +||++|+|++-|++
T Consensus 520 w~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t 599 (910)
T KOG1539|consen 520 WDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST 599 (910)
T ss_pred EecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc
Confidence 994321 2356789999999987 59999999999999
Q ss_pred eeeccccCCCCCcchhhhhhcccccccccccceeEEEEEEEeC
Q 003171 520 IRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVG 562 (842)
Q Consensus 520 IrvWd~~~~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~ 562 (842)
||+||+.+...+|.+....-.. ...|+++++ |..|-.++
T Consensus 600 Ir~wDlpt~~lID~~~vd~~~~-sls~SPngD---~LAT~Hvd 638 (910)
T KOG1539|consen 600 IRTWDLPTGTLIDGLLVDSPCT-SLSFSPNGD---FLATVHVD 638 (910)
T ss_pred EEEEeccCcceeeeEecCCcce-eeEECCCCC---EEEEEEec
Confidence 9999999988888876543222 223555555 44455554
No 110
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.3e-16 Score=175.75 Aligned_cols=221 Identities=21% Similarity=0.276 Sum_probs=162.9
Q ss_pred CCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 142 EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 142 ~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
+..|.+|. ++.|.|||.++...... +.. .| ..-|.|+++. +..+.+|+.||.|..+|+
T Consensus 229 G~~LavG~~~g~v~iwD~~~~k~~~~-----------------~~~-~h-~~rvg~laW~--~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 229 GSHLAVGTSDGTVQIWDVKEQKKTRT-----------------LRG-SH-ASRVGSLAWN--SSVLSSGSRDGKILNHDV 287 (484)
T ss_pred CCEEEEeecCCeEEEEehhhcccccc-----------------ccC-Cc-CceeEEEecc--CceEEEecCCCcEEEEEE
Confidence 34555554 78999999876443321 111 13 6679999997 588999999999999999
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeeccc
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~ 299 (842)
.... ....++++|+..|..+.+++|+. |+||+.|+.+.|||....+..+.+..
T Consensus 288 R~~~-------~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~------------------- 341 (484)
T KOG0305|consen 288 RISQ-------HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE------------------- 341 (484)
T ss_pred ecch-------hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec-------------------
Confidence 8762 12224899999999999999997 89999999999999855443333322
Q ss_pred ceeccceeeeecCCEEEEEEcC-CCCEEEEeC---CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEE
Q 003171 300 HLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG---FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (842)
Q Consensus 300 ~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s---~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (842)
| ...|+.++.++ ....|++|+ |++|++||..+|+.+....-..|
T Consensus 342 H----------~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ---------------------- 389 (484)
T KOG0305|consen 342 H----------TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ---------------------- 389 (484)
T ss_pred c----------ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc----------------------
Confidence 1 44577777766 445677765 57899999999987654422222
Q ss_pred EEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEE--EeCCCeEEEEcC-CCCe
Q 003171 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWT--GGANGLLLQWDP-NGNR 451 (842)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~S--gs~DgtIrlWD~-~g~~ 451 (842)
|..|.+++... |++ |..++.|.||+. +-+.
T Consensus 390 ----------------------------------------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 390 ----------------------------------------------VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred ----------------------------------------------eeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence 23344444442 443 335678999999 7789
Q ss_pred eeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC
Q 003171 452 LQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 452 l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~ 487 (842)
+..+.+|+.+|..+ ++||+.|++|+.|.|+++|++=
T Consensus 424 ~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 424 VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred eeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 99999999999987 5799999999999999999974
No 111
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.2e-15 Score=153.53 Aligned_cols=269 Identities=14% Similarity=0.125 Sum_probs=177.4
Q ss_pred CceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE
Q 003171 132 GCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 132 ~~~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS 208 (842)
+..+.+|..+ +..|.+ ++|.+|++||..++..... + .+- .-.|-++.|-.....+..
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t-i-----------------~sk--kyG~~~~~Fth~~~~~i~ 73 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT-I-----------------NSK--KYGVDLACFTHHSNTVIH 73 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE-e-----------------ecc--cccccEEEEecCCceEEE
Confidence 3466677776 335555 4577999999987654321 0 000 112334444334445555
Q ss_pred EeC--CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 209 GHR--DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 209 Gs~--DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
+|. |.+||.-++.+. +.++-|.||...|++|..+|-+. ++|+|.|++||+||+....++..+..
T Consensus 74 sStk~d~tIryLsl~dN--------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~----- 140 (311)
T KOG1446|consen 74 SSTKEDDTIRYLSLHDN--------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL----- 140 (311)
T ss_pred ccCCCCCceEEEEeecC--------ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-----
Confidence 555 889999999986 78899999999999999999776 78999999999999975433221111
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCC-cEEEEEccCC--cEEEEeecCCceEeeeeccc
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFALWDARTR--ELLKVFNIDGQIENRVDMSL 362 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~-tI~lWD~~tg--~~l~~l~~~~~~~~~~~~s~ 362 (842)
..--+.|+++.|-.++.+... .|+|+|++.- .+-.+|....
T Consensus 141 --------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---------- 184 (311)
T KOG1446|consen 141 --------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD---------- 184 (311)
T ss_pred --------------------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC----------
Confidence 011134567777666666543 8999998752 1222221110
Q ss_pred CCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEE-ee-cCc----cccCC--Cc-eEEEEECCCCc-
Q 003171 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRV-AA-KGG----FGDDN--RR-TEALTTSIDGM- 432 (842)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v-~~-~g~----~~~~~--~~-v~al~~s~dg~- 432 (842)
. .......+.|+++++..++.+..+...+ .. +|+ |..+. .. .....|+||++
T Consensus 185 ------~------------~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 185 ------N------------DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred ------C------------CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence 0 0111123567777777777776654333 32 343 22222 11 23456999999
Q ss_pred EEEEeCCCeEEEEcC-CCCeeeeeec-CCccEEEEEecCCEEEEEecCcEEEEEeCC
Q 003171 433 IWTGGANGLLLQWDP-NGNRLQDFQY-LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~-~g~~l~~l~~-H~~~V~sls~dG~~LasGs~DgtIrlWD~~ 487 (842)
+++|+.||+|.+|++ +|+.+..+.+ +..++.|+.+..++....+.+..+-.|=.+
T Consensus 247 vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 247 VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 788889999999999 7999988888 788999999888877777788889999654
No 112
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.71 E-value=7.2e-16 Score=167.48 Aligned_cols=291 Identities=13% Similarity=0.183 Sum_probs=187.6
Q ss_pred ceeEEEEec--CCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCT--EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~--~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
+.+.+|+.+ +-+|+.|+ |.+|++||++...... |. .....|. . +..|.++.+++.|.+|...
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~---------~~-fr~l~P~----E-~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM---------RS-FRQLQPC----E-THQINSLQYSVTGDQILVV 232 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccc---------hh-hhccCcc----c-ccccceeeecCCCCeEEEE
Confidence 356677776 44888865 9999999997543211 11 1111221 1 4589999999999998888
Q ss_pred eCCCcEEEEECCCCcc----CCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCce
Q 003171 210 HRDGRIMCWKMNARLL----DSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~----~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~ 283 (842)
+..-.+||.|-++-.. -.+....-....+||...+++.+|.|+.+ ++|+|.|||+|+||+..-+..+...
T Consensus 233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi---- 308 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI---- 308 (641)
T ss_pred ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE----
Confidence 8888899998765310 00011111223479999999999999875 8899999999999997643322211
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe-CCCcEEEEEccCCcEEEEeecCCceEeeeeccc
Q 003171 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (842)
Q Consensus 284 ~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (842)
-.+.. ++- --.+..-+.++++..|+.+ .|+.|.+||...... +..
T Consensus 309 ------------k~k~~---~g~----Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v------~p~--------- 354 (641)
T KOG0772|consen 309 ------------KTKPA---GGK----RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV------RPV--------- 354 (641)
T ss_pred ------------eeccC---CCc----ccCceeeecCCCcchhhhcccCCceeeeecCCccc------ccc---------
Confidence 00000 110 0123334456666665554 378999999733211 000
Q ss_pred CCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCe
Q 003171 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGL 441 (842)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~Dgt 441 (842)
++ +... | .....|.+|+||+||+ |+|-+.|++
T Consensus 355 ---------~~---vk~A---------------------H--------------~~g~~Itsi~FS~dg~~LlSRg~D~t 387 (641)
T KOG0772|consen 355 ---------MK---VKDA---------------------H--------------LPGQDITSISFSYDGNYLLSRGFDDT 387 (641)
T ss_pred ---------eE---eeec---------------------c--------------CCCCceeEEEeccccchhhhccCCCc
Confidence 00 0000 0 0123578899999998 899999999
Q ss_pred EEEEcC-C-CCeeeeeecCC----ccEEEEEecCCEEEEEec------CcEEEEEeCCC-cccccccccccCEEEEEeCC
Q 003171 442 LLQWDP-N-GNRLQDFQYLP----FAVQCLCTFGSQIWVGYM------NGIVQVLDLEG-NLLGGWVAHSSPVIKMAVGA 508 (842)
Q Consensus 442 IrlWD~-~-g~~l~~l~~H~----~~V~sls~dG~~LasGs~------DgtIrlWD~~g-~~i~~l~gH~~~V~sla~dg 508 (842)
+|+||+ + .+++.+..+-. ..=.|++|+.+.|++|++ .|++.++|... ..++.+.-.+..|..+.+++
T Consensus 388 LKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 388 LKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred eeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc
Confidence 999999 3 47777665422 223467889999999874 47899999753 34555444466677777776
Q ss_pred C--EEEEEcCCCCeeec
Q 003171 509 G--YIFTLANHGGIRGW 523 (842)
Q Consensus 509 ~--~l~S~S~DgtIrvW 523 (842)
+ +|+.++.||+++++
T Consensus 468 kLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 468 KLNQIFAGSGDGTAHVY 484 (641)
T ss_pred hhhheeeecCCCceEEE
Confidence 5 58889999999986
No 113
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.71 E-value=2.8e-16 Score=169.85 Aligned_cols=267 Identities=16% Similarity=0.230 Sum_probs=163.7
Q ss_pred EEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCee--eeeecCCCeEEEEEcCCCCEEEEEeCCCc
Q 003171 137 TIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK--ESVKGVSSVMCMVGDEASGVVWSGHRDGR 214 (842)
Q Consensus 137 ~l~~~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~V~~la~dpdg~~LaSGs~DGt 214 (842)
+|....+.+|.+.-++|+|||+..... ..|.. .-+...+-+.++...|||+.|.+|+.-.+
T Consensus 426 tIS~~trhVyTgGkgcVKVWdis~pg~-----------------k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeast 488 (705)
T KOG0639|consen 426 TISNPTRHVYTGGKGCVKVWDISQPGN-----------------KSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAST 488 (705)
T ss_pred EecCCcceeEecCCCeEEEeeccCCCC-----------------CCccccccccCcccceeeeEecCCCceEEeccccce
Confidence 333346689999999999999964311 11110 01111567888999999999999999999
Q ss_pred EEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCE-EEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 215 IrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
+-|||+.... .+.+. .+..-.-+-.+++.+||.++ +++..||.|+|||+......
T Consensus 489 lsiWDLAapT----prika--eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V------------------ 544 (705)
T KOG0639|consen 489 LSIWDLAAPT----PRIKA--ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV------------------ 544 (705)
T ss_pred eeeeeccCCC----cchhh--hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee------------------
Confidence 9999998852 11111 12222235678899999995 68999999999999663221
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccce
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
.++.|| ...+.|+..+++|.++|+++ |.++|-||++++..+....-..|+
T Consensus 545 -rqfqGh----------tDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQI------------------ 595 (705)
T KOG0639|consen 545 -RQFQGH----------TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQI------------------ 595 (705)
T ss_pred -ecccCC----------CCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhh------------------
Confidence 123333 44567888889999999999 789999999988654322111111
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCCCCe
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNR 451 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~ 451 (842)
-+|-..|.+. ++.|=.++.+.+-..++..
T Consensus 596 --------------------------------------------------fSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 596 --------------------------------------------------FSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred --------------------------------------------------eecccCCCccceeeecccCcEEEEecCCcc
Confidence 1112223333 4455555555555555544
Q ss_pred eeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEE--EEeCCCEEEEEcCCCCeeecc
Q 003171 452 LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK--MAVGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 452 l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s--la~dg~~l~S~S~DgtIrvWd 524 (842)
...+..|.+-|.++.+ .|+++++.+.|.-+..|..- |.-+-..+. .+.|++ |..|.++++|||.|+...++.
T Consensus 626 kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 626 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEE
Confidence 4445556666666543 46666666666666666653 433322222 233443 345666666666666555543
No 114
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.1e-17 Score=185.55 Aligned_cols=220 Identities=21% Similarity=0.322 Sum_probs=165.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
...|.|+..-..++.+++|+.|-.+-+|..... ..+..|.||..+|.||.|+++-. |++|+.||+||+||+
T Consensus 28 saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 28 SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhceeeeeccceeeccCCCceeeccccccCC--------chhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 446677766556789999999999999998775 45677999999999999999766 679999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
+..+..-++. +| ..++..+.+.+-+...++++ +..+++||.+..-|...+
T Consensus 100 eeAk~vrtLt-------------------gh----------~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~ 150 (825)
T KOG0267|consen 100 EEAKIVRTLT-------------------GH----------LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY 150 (825)
T ss_pred hhhhhhhhhh-------------------cc----------ccCcceeeeccceEEeccccccccceehhhhccCceeee
Confidence 7543111111 11 22344555666665555554 456899998765554444
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
.+ |...|..+.|+
T Consensus 151 ~s-------------------------------------------------------------------~~~vv~~l~ls 163 (825)
T KOG0267|consen 151 KS-------------------------------------------------------------------HTRVVDVLRLS 163 (825)
T ss_pred cC-------------------------------------------------------------------CcceeEEEeec
Confidence 32 33345567899
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecC--CEEEEEecCcEEEEEeCCC-cccccccccccCEEE
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLEG-NLLGGWVAHSSPVIK 503 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~g-~~i~~l~gH~~~V~s 503 (842)
|+|+ +++|+.|.++++||+ .|+.+.+|..|.+.|.++.++. -.+++|+.|++|++||++. ..+.....-...|.+
T Consensus 164 P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~ 243 (825)
T KOG0267|consen 164 PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRS 243 (825)
T ss_pred CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCcee
Confidence 9997 789999999999999 7999999999999999987653 3888999999999999984 556666666888998
Q ss_pred EEe--CCCEEEEE
Q 003171 504 MAV--GAGYIFTL 514 (842)
Q Consensus 504 la~--dg~~l~S~ 514 (842)
+++ ++..+++|
T Consensus 244 ~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 244 LAFNPDGKIVLSG 256 (825)
T ss_pred eeecCCceeeecC
Confidence 886 45555544
No 115
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.70 E-value=2.2e-16 Score=170.55 Aligned_cols=235 Identities=19% Similarity=0.308 Sum_probs=172.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..-|.+++++...+.++||++ |.|||||+.... ...+...+- ...-.+.|.++.+.|||+ |++|++-.++-|||+
T Consensus 419 GEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg--~k~PvsqLd-cl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG--NKSPVSQLD-CLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred CcEEEEEEecCCcceeEecCC-CeEEEeeccCCC--CCCcccccc-ccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 456777889988999999987 789999997641 111111111 122357899999999998 999999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCE-EEEeCCCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK-VWSAGFLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~-v~s~s~~tI~lWD~~tg~~l~~l 348 (842)
..-...+.... +.. ......|+.+++... +.|++|+.|.|||+++..+++.|
T Consensus 495 AapTprikael---------------------tss------apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf 547 (705)
T KOG0639|consen 495 AAPTPRIKAEL---------------------TSS------APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF 547 (705)
T ss_pred cCCCcchhhhc---------------------CCc------chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecc
Confidence 76433222111 000 012233455554443 34567899999999876665554
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
.+ |...+.++.++
T Consensus 548 qG-------------------------------------------------------------------htDGascIdis 560 (705)
T KOG0639|consen 548 QG-------------------------------------------------------------------HTDGASCIDIS 560 (705)
T ss_pred cC-------------------------------------------------------------------CCCCceeEEec
Confidence 43 33334567788
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCCCcccccccccccCEEEE
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKM 504 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sl 504 (842)
+||+ ||+|+-|++||.||+ +|+.++... -++.|.++ ++.|.+|++|=..+.+.|....+..-..+..|.+-|.+|
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSl 639 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSL 639 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEE
Confidence 8997 999999999999999 787665432 24568887 678999999999999999998877777788999999998
Q ss_pred Ee--CCCEEEEEcCCCCeeecc
Q 003171 505 AV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 505 a~--dg~~l~S~S~DgtIrvWd 524 (842)
.+ .|++.+|.+.|+-+-.|.
T Consensus 640 KFa~cGkwfvStGkDnlLnawr 661 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGKDNLLNAWR 661 (705)
T ss_pred EecccCceeeecCchhhhhhcc
Confidence 74 899999999999999998
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=8.5e-15 Score=151.24 Aligned_cols=251 Identities=14% Similarity=0.178 Sum_probs=153.2
Q ss_pred eEEEEec--CCEEE-EecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 135 LRTIVCT--EEQLW-AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 135 ~~~l~~~--~~~l~-~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
|..+.+. .+.|+ ++-|+++|+||........ .| .+ ..|+++++|-+ -..+++|+-
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~-----------------~~---~~-~~plL~c~F~d-~~~~~~G~~ 73 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL-----------------KF---KH-GAPLLDCAFAD-ESTIVTGGL 73 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh-----------------he---ec-CCceeeeeccC-CceEEEecc
Confidence 4444444 33444 4669999999986532111 12 22 77999999985 578999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC-CCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
||.||..|++++ ....+..|..+|++|.+++. |.++|||+|++||+||.........+..
T Consensus 74 dg~vr~~Dln~~---------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~---------- 134 (323)
T KOG1036|consen 74 DGQVRRYDLNTG---------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ---------- 134 (323)
T ss_pred CceEEEEEecCC---------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc----------
Confidence 999999999996 34566789999999999974 5589999999999999854111111100
Q ss_pred eeceeecccceeccceeeeecCCEEEEEEcCCCCEEEE-eCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccc
Q 003171 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s-~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (842)
...|.++.. .+.+|.. +.+..+.+||+++-..-..-. ..+. ..
T Consensus 135 --------------------~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~r-eS~l----ky--------- 178 (323)
T KOG1036|consen 135 --------------------GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRR-ESSL----KY--------- 178 (323)
T ss_pred --------------------CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhc-cccc----ee---------
Confidence 112333333 3444444 557889999998743210000 0000 00
Q ss_pred cceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee---c-----C--ccc---------cCCCceEEEEECCC
Q 003171 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA---K-----G--GFG---------DDNRRTEALTTSID 430 (842)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~---~-----g--~~~---------~~~~~v~al~~s~d 430 (842)
...++.+.|+...-..++-+|-..+.. . - .|. .....|.+++|+|-
T Consensus 179 ---------------qtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 179 ---------------QTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred ---------------EEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 000112222111111222222111110 0 0 010 12246788999885
Q ss_pred -CcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEec
Q 003171 431 -GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYM 477 (842)
Q Consensus 431 -g~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~ 477 (842)
|+++||+.||.|-+||+ +.+.+..|......|-++++ +|..||+|+.
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 66999999999999999 67888888776667777765 7999998874
No 117
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=9.7e-16 Score=158.10 Aligned_cols=101 Identities=20% Similarity=0.225 Sum_probs=81.9
Q ss_pred EECCCCc-EEEEeCCCeEEEEcCCCCeeeeeecCC--ccEEEEEecCCEEEEEecCcEEEEEeC----CCc-----cccc
Q 003171 426 TTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLP--FAVQCLCTFGSQIWVGYMNGIVQVLDL----EGN-----LLGG 493 (842)
Q Consensus 426 ~~s~dg~-l~Sgs~DgtIrlWD~~g~~l~~l~~H~--~~V~sls~dG~~LasGs~DgtIrlWD~----~g~-----~i~~ 493 (842)
-+..++. |.|++.|.+|.||++.|+.++++.... +.-..++|+|++|++++.---|+||.+ .|. ..-.
T Consensus 194 GiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~ 273 (420)
T KOG2096|consen 194 GIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS 273 (420)
T ss_pred eecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhe
Confidence 3344444 789999999999999999998886432 233467899999999998888999995 243 3557
Q ss_pred ccccccCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 494 WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 494 l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
|+||.+.|.++++ +.+.++|.|.||++|+||..
T Consensus 274 LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 274 LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred eccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 8999999999986 66789999999999999964
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=164.62 Aligned_cols=233 Identities=20% Similarity=0.257 Sum_probs=156.2
Q ss_pred eeEEEEecCC--EEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCTEE--QLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~~~--~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+.+|+.++. -|++| .-+.|++|.+.++..... + +.| -.+|+|+.|+.||.+|+|||
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v-----------------~--~aH-YQ~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV-----------------L--SAH-YQSITCLKFSDDGSHIITGS 142 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHH-----------------H--Hhh-ccceeEEEEeCCCcEEEecC
Confidence 3667777655 44456 478999999988654321 1 233 67999999999999999999
Q ss_pred CCCcEEEEECCCCcc-CCCCCcceeEEecccCCcEEEEEEecCC---CEEEeeCCCcEEEEeCCCccceeecCCCceeee
Q 003171 211 RDGRIMCWKMNARLL-DSDDGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~-~~~~~~~~~~~l~gH~~~V~slafs~dG---~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~ 286 (842)
+||.|.+|.+..-.. +.....+..+.|..|+-+|+++...+.| +|+|+|.|.|+|+||+..+.-.++..
T Consensus 143 kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~------- 215 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT------- 215 (476)
T ss_pred CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-------
Confidence 999999998654211 1122346678899999999999998754 59999999999999997653222211
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCCceEeeeecccCCC
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (842)
....+.+++.++.+..+++|+. +.|.+-++.+- .++..
T Consensus 216 -----------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~--------~~~~~---------- 254 (476)
T KOG0646|consen 216 -----------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL--------SGQSA---------- 254 (476)
T ss_pred -----------------------cCCcceeEEEcccccEEEecCCcceEEeeehhcC--------Ccccc----------
Confidence 1334678888888888888874 44544443210 11100
Q ss_pred cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCC--CceEEEEECCCCc-EEEEeCCCeE
Q 003171 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN--RRTEALTTSIDGM-IWTGGANGLL 442 (842)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~--~~v~al~~s~dg~-l~Sgs~DgtI 442 (842)
.++ .... .+.....+. +.+|. ..|.+|+++.||. |+||+.||.|
T Consensus 255 -----~v~---~k~~---------~~~~t~~~~----------------~~Gh~~~~~ITcLais~DgtlLlSGd~dg~V 301 (476)
T KOG0646|consen 255 -----GVN---QKGR---------HEENTQINV----------------LVGHENESAITCLAISTDGTLLLSGDEDGKV 301 (476)
T ss_pred -----ccc---cccc---------ccccceeee----------------eccccCCcceeEEEEecCccEEEeeCCCCCE
Confidence 000 0000 000001112 23333 3788899999998 6899999999
Q ss_pred EEEcC-CCCeeeeeecCCccEEEEEe
Q 003171 443 LQWDP-NGNRLQDFQYLPFAVQCLCT 467 (842)
Q Consensus 443 rlWD~-~g~~l~~l~~H~~~V~sls~ 467 (842)
++||+ .-+|++++....++|+.+..
T Consensus 302 cvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 302 CVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred EEEecchHHHHHHHhhhccccceeEe
Confidence 99999 67888888766778887643
No 119
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.67 E-value=2.1e-15 Score=162.72 Aligned_cols=249 Identities=16% Similarity=0.169 Sum_probs=170.8
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCC--CCCcceeEEecccCCcEEEEEEecC--CCEEEeeCCCcEE
Q 003171 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDS--DDGFGEVLSWQAHRGPVLSLCISSY--GDLWSGSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g~~~~--~~~~~~~~~l~gH~~~V~slafs~d--G~L~SgS~DgtIr 265 (842)
.+.|..+..=|+. .+|||++..+.|.|||...-.... ...+..-+.|.||++.=++|+|++. |.|+||+.|++|+
T Consensus 124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~ 203 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC 203 (422)
T ss_pred CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEE
Confidence 5566666666654 788889999999999987642100 0133445688999987888999986 5599999999999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-CCEEEEeC-CCcEEEEEccCCc
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRE 343 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s-~~tI~lWD~~tg~ 343 (842)
+||+...... ...+. ....+.+| ...|.-++...- ...+.+++ ++.+.|||++++.
T Consensus 204 lwdi~~~~~~------~~~~~------p~~~~~~h----------~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~ 261 (422)
T KOG0264|consen 204 LWDINAESKE------DKVVD------PKTIFSGH----------EDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT 261 (422)
T ss_pred EEeccccccC------Ccccc------ceEEeecC----------CcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence 9999653221 00000 00011122 222333333332 23444555 4678999998631
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceE
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (842)
. .. + . ....|...+.
T Consensus 262 ~----~~--~-------------------------~----------------------------------~~~ah~~~vn 276 (422)
T KOG0264|consen 262 S----KP--S-------------------------H----------------------------------SVKAHSAEVN 276 (422)
T ss_pred C----CC--c-------------------------c----------------------------------cccccCCcee
Confidence 0 00 0 0 0123456677
Q ss_pred EEEECCCCc--EEEEeCCCeEEEEcC-C-CCeeeeeecCCccEEEEEe--c-CCEEEEEecCcEEEEEeCC--Cc-----
Q 003171 424 ALTTSIDGM--IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCT--F-GSQIWVGYMNGIVQVLDLE--GN----- 489 (842)
Q Consensus 424 al~~s~dg~--l~Sgs~DgtIrlWD~-~-g~~l~~l~~H~~~V~sls~--d-G~~LasGs~DgtIrlWD~~--g~----- 489 (842)
+++|+|-+- ||+||.|++|+|||+ + .+++.+|.+|...|.+|.. . ...|||++.|+.+.|||+. |+
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 888877443 799999999999999 4 5789999999999999954 3 3589999999999999975 32
Q ss_pred --------ccccccccccCEEEEEeCC---CEEEEEcCCCCeeecccc
Q 003171 490 --------LLGGWVAHSSPVIKMAVGA---GYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 490 --------~i~~l~gH~~~V~sla~dg---~~l~S~S~DgtIrvWd~~ 526 (842)
++-.-.||++.|..+.+++ -.++|++.|+.+.||...
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 2456679999999998754 468999999999999854
No 120
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=8.5e-15 Score=151.36 Aligned_cols=233 Identities=20% Similarity=0.268 Sum_probs=162.2
Q ss_pred ceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeec
Q 003171 232 GEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILT 311 (842)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s 311 (842)
..+..+.+|.++|++||.+. -.++|||.|-||+|+|+......-.+. .+.
T Consensus 34 ~~lF~~~aH~~sitavAVs~-~~~aSGssDetI~IYDm~k~~qlg~ll-----------------------------~Ha 83 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVSG-PYVASGSSDETIHIYDMRKRKQLGILL-----------------------------SHA 83 (362)
T ss_pred eccccccccccceeEEEecc-eeEeccCCCCcEEEEeccchhhhccee-----------------------------ccc
Confidence 44667789999999999863 237899999999999996532211110 113
Q ss_pred CCEEEEEEcCCCC--EEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCcccee
Q 003171 312 SDIKNLLSDHSRA--KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSS 388 (842)
Q Consensus 312 ~~v~~las~~~~~--~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s 388 (842)
+.++++-+.++-. .+.|++ |+.|.+|++..-++++++.+|..-++-+
T Consensus 84 gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~l------------------------------ 133 (362)
T KOG0294|consen 84 GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDL------------------------------ 133 (362)
T ss_pred cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccccee------------------------------
Confidence 4566666655443 555665 5789999999999999988775433322
Q ss_pred eeEeecCcceEEecCCcEEEEee----cCccccC-CCceEEEEECCCCc-EEEEeCCCeEEEEcCC-CCeeeeeecCCcc
Q 003171 389 FGFFQRSRNAIMGAADAVRRVAA----KGGFGDD-NRRTEALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQYLPFA 461 (842)
Q Consensus 389 ~~~~~~~~~~~~g~~~~v~~v~~----~g~~~~~-~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~~ 461 (842)
...|.++.++.-..|++.|.|. ++.+.-. ......|.|+|.|. .+.++.++ |-+|.+. -....++.- ...
T Consensus 134 -siHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~-~~r 210 (362)
T KOG0294|consen 134 -SIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIEN-PKR 210 (362)
T ss_pred -EecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhc-ccc
Confidence 3333344444444555555554 1222211 12223477889887 77777676 9999984 444444432 245
Q ss_pred EEEEEe-cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE----eCCCEEEEEcCCCCeeeccccC
Q 003171 462 VQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA----VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 462 V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla----~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+.|+-+ ++..|++|..|+.|++||.. +.+...+.+|...|..+. +++.+|+|+|.||.|++||+..
T Consensus 211 ~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 211 ILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 667755 68899999999999999987 788999999999999987 3568999999999999999753
No 121
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=3.2e-15 Score=149.68 Aligned_cols=243 Identities=14% Similarity=0.118 Sum_probs=155.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec--CCC-EEEeeCCCcEEEEeC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~-L~SgS~DgtIrvWd~ 269 (842)
.|-.+..|=-|++|||++.|++|||+..... ...+.+.+|.||++||+.++|-. .|. |+|+|.||.|-||.-
T Consensus 13 ~IHda~lDyygkrlATcsSD~tVkIf~v~~n-----~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCSSDGTVKIFEVRNN-----GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhHhhhhhhcceeeeecCCccEEEEEEcCC-----CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 3444455556899999999999999998764 22356788999999999999976 677 789999999999997
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC--CCEEEEeC-CCcEEEEEccCC-cEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTR-ELL 345 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~v~s~s-~~tI~lWD~~tg-~~l 345 (842)
+++.-... +... .| ...+++++..+. +-.|+|++ |++|.|.+.++. .-.
T Consensus 88 ~~g~w~k~-~e~~----------------~h----------~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~ 140 (299)
T KOG1332|consen 88 ENGRWTKA-YEHA----------------AH----------SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWT 140 (299)
T ss_pred CCCchhhh-hhhh----------------hh----------cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCcc
Confidence 66421100 0000 01 223444444332 23455554 567777665432 100
Q ss_pred --EEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEe-e----cCccccC
Q 003171 346 --KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA-A----KGGFGDD 418 (842)
Q Consensus 346 --~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~-~----~g~~~~~ 418 (842)
+....| .-|+..+. . .|.+.++
T Consensus 141 t~ki~~aH---------------------------------------------------~~GvnsVswapa~~~g~~~~~ 169 (299)
T KOG1332|consen 141 TSKIVFAH---------------------------------------------------EIGVNSVSWAPASAPGSLVDQ 169 (299)
T ss_pred chhhhhcc---------------------------------------------------ccccceeeecCcCCCcccccc
Confidence 000001 11111110 0 0111111
Q ss_pred CCceEEEEECCCCcEEEEeCCCeEEEEcC-CC--CeeeeeecCCccEEEEE--ec---C-CEEEEEecCcEEEEEeCC--
Q 003171 419 NRRTEALTTSIDGMIWTGGANGLLLQWDP-NG--NRLQDFQYLPFAVQCLC--TF---G-SQIWVGYMNGIVQVLDLE-- 487 (842)
Q Consensus 419 ~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g--~~l~~l~~H~~~V~sls--~d---G-~~LasGs~DgtIrlWD~~-- 487 (842)
.. ..+-.+++||+.|++|++|+. ++ +.-++|.+|+++|+.++ |. + .+||++|.||++-||-..
T Consensus 170 ~~------~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 170 GP------AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred Cc------ccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 00 001135899999999999999 44 44566999999999884 42 2 499999999999999754
Q ss_pred Ccc--cccccccccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 488 GNL--LGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 488 g~~--i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
+.. ...+.--...++.+.+ .|..|+-++.|+.|.+|.
T Consensus 244 ~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 221 2333345678999874 788999899999999997
No 122
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.3e-14 Score=158.61 Aligned_cols=235 Identities=18% Similarity=0.244 Sum_probs=166.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc-CCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
.++|.|||++.+.+.||.+=.||.|.+|++..+= -+...+.|| .+.|-+++|++.|+|+|.+.+|.|.-||+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w-------~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW-------FLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc-------eeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEec
Confidence 4589999999999999999999999999998752 345566777 47899999999899999999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.+++.......- .+.+-.++..+.+..+..+- ++.+...+..+++..
T Consensus 98 ~~lk~~~~~d~~-----------------------------gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~--- 145 (691)
T KOG2048|consen 98 HTLKQKYNIDSN-----------------------------GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT--- 145 (691)
T ss_pred ccCceeEEecCC-----------------------------CcceeEEEeCCccceEEeecCCceEEEEecCCceEE---
Confidence 876543322110 11122233333333333332 222222222222110
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
+ +-.|-....++.+|.+.
T Consensus 146 ------------------------------------------~--------------------~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 146 ------------------------------------------Y--------------------KRSLMRQKSRVLSLSWN 163 (691)
T ss_pred ------------------------------------------E--------------------EeecccccceEEEEEec
Confidence 0 00022234677889999
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeee--ee---ecCC---ccEEEEEe-cCCEEEEEecCcEEEEEeCC-Ccccccccc
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGNRLQ--DF---QYLP---FAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~--~l---~~H~---~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (842)
+++. |++||.||.||+||+ .+..+. ++ .... .-|+++.+ ....|++|.+-|+|+.||.. |.+++....
T Consensus 164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSC 243 (691)
T ss_pred CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhh
Confidence 9998 999999999999999 676554 22 1122 23556654 45689999999999999987 899999999
Q ss_pred cccCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 497 HSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 497 H~~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
|..-|.+|+. ++++++++|.|+.|-.+...
T Consensus 244 h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 244 HDADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred hhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 9999999984 56899999999998776643
No 123
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.65 E-value=1.3e-14 Score=146.55 Aligned_cols=241 Identities=17% Similarity=0.153 Sum_probs=157.6
Q ss_pred EEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCC
Q 003171 235 LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSD 313 (842)
Q Consensus 235 ~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~ 313 (842)
+.+++|.+.|.+|+|..+|. |++||.|++++||+++......... .++| +..
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~-----------------~~gh----------~~s 66 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELV-----------------YRGH----------TDS 66 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhc-----------------ccCC----------Ccc
Confidence 56789999999999999997 9999999999999997642221111 1122 222
Q ss_pred EEEEEEcCC-CCEEEEe-CCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeE
Q 003171 314 IKNLLSDHS-RAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (842)
Q Consensus 314 v~~las~~~-~~~v~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~ 391 (842)
|.-++-++. ...++++ ++++|++||.++++++....-.+...+ .. .
T Consensus 67 vdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~-------------------------------w 114 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN-IT-------------------------------W 114 (313)
T ss_pred hhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE-EE-------------------------------E
Confidence 333343332 2234443 468999999999999876543332111 11 1
Q ss_pred eecCcceEEecCC-cEEEEeecC--cc--ccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEE
Q 003171 392 FQRSRNAIMGAAD-AVRRVAAKG--GF--GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQC 464 (842)
Q Consensus 392 ~~~~~~~~~g~~~-~v~~v~~~g--~~--~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~s 464 (842)
++.+.+.+.+..+ -+.-+.... .. .+....+.-+.+..++. +......|+|.+-.- .-+.+++++.|+....|
T Consensus 115 sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCic 194 (313)
T KOG1407|consen 115 SPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCIC 194 (313)
T ss_pred cCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEE
Confidence 1112222222211 111111100 00 01112233455555555 344455788988887 78999999999977667
Q ss_pred EE--ecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCCCcch
Q 003171 465 LC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSI 534 (842)
Q Consensus 465 ls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~~d~~ 534 (842)
|. |+|+++|+|+.|-.+.|||++ --|.+.+.-|.-+|..|++ ||++|+|||.|..|-|=++.+.+.+..+
T Consensus 195 I~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 195 IEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI 269 (313)
T ss_pred EEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe
Confidence 65 479999999999999999997 4578999999999999985 8999999999999977776665555444
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.5e-16 Score=178.81 Aligned_cols=215 Identities=18% Similarity=0.265 Sum_probs=164.4
Q ss_pred EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCce
Q 003171 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (842)
Q Consensus 205 ~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~ 283 (842)
.+..+..+-..|+|+... +.+|...|.++..-..++ +++|++|-.+.||....--...++
T Consensus 6 ~~m~~~~~t~Lr~~~~~~--------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~----- 66 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE--------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL----- 66 (825)
T ss_pred ccceeeeeeccccccchh--------------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee-----
Confidence 444555566677776433 457899999998866666 689999999999987331111111
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeeccc
Q 003171 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (842)
Q Consensus 284 ~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (842)
.+| ...|.++.++.....|..|+ +++||+||++.++.+++|.+|-
T Consensus 67 --------------~~h----------espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~---------- 112 (825)
T KOG0267|consen 67 --------------TGH----------ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHL---------- 112 (825)
T ss_pred --------------ecc----------CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccc----------
Confidence 122 55688888888777777776 6799999999877666654432
Q ss_pred CCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCe
Q 003171 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGL 441 (842)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~Dgt 441 (842)
..+..|.|.|-+. .++|+.|+.
T Consensus 113 ---------------------------------------------------------~~~~sv~f~P~~~~~a~gStdtd 135 (825)
T KOG0267|consen 113 ---------------------------------------------------------LNITSVDFHPYGEFFASGSTDTD 135 (825)
T ss_pred ---------------------------------------------------------cCcceeeeccceEEecccccccc
Confidence 1223344555554 578999999
Q ss_pred EEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEeCCC--EEEEEc
Q 003171 442 LLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAG--YIFTLA 515 (842)
Q Consensus 442 IrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~--~l~S~S 515 (842)
+++||. ...|..++.+|...|.++ .|+|+++++|+.|.+++|||+. |+++..|.+|++.|.++.+++. .+++||
T Consensus 136 ~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs 215 (825)
T KOG0267|consen 136 LKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS 215 (825)
T ss_pred ceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC
Confidence 999999 478999999999888876 5799999999999999999986 9999999999999999987654 577999
Q ss_pred CCCCeeeccccCCC
Q 003171 516 NHGGIRGWNVTSPG 529 (842)
Q Consensus 516 ~DgtIrvWd~~~~~ 529 (842)
.|++||+||++++.
T Consensus 216 ~d~tv~f~dletfe 229 (825)
T KOG0267|consen 216 SDRTVRFWDLETFE 229 (825)
T ss_pred CCceeeeeccceeE
Confidence 99999999987643
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=9.3e-16 Score=173.70 Aligned_cols=224 Identities=18% Similarity=0.231 Sum_probs=160.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-C-EEEeeCCCcEEEEeCCCccceeecC
Q 003171 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLK 279 (842)
Q Consensus 202 dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvWd~~t~~~~l~~~ 279 (842)
+.++|||++..|.|-+||+.... +-+.+..|..|+..|+++.|++.- . |+|||+||+||+||+.......++
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~-----rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~- 172 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSI-----RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF- 172 (839)
T ss_pred hhhhheeecCCCcEEEEecCccc-----cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-
Confidence 45899999999999999998721 114556789999999999999864 3 789999999999999653221111
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-CCEEEEeCC-CcEEEEEccCCcEEEEeecCCceEee
Q 003171 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENR 357 (842)
Q Consensus 280 ~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (842)
++ -+..++-+.+++. +.+++++.+ +.+++||++.-.. .
T Consensus 173 ------------------~~----------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r---------~--- 212 (839)
T KOG0269|consen 173 ------------------RS----------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR---------C--- 212 (839)
T ss_pred ------------------cc----------cchhhhceeeccCCCceEEEecCCceEEEeeccCchh---------H---
Confidence 11 0334566666654 445666665 5789999863211 0
Q ss_pred eecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEE
Q 003171 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (842)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sg 436 (842)
. -.+..|.+.|.++-+.|++. ||||
T Consensus 213 -------------------------~-----------------------------~k~~AH~GpV~c~nwhPnr~~lATG 238 (839)
T KOG0269|consen 213 -------------------------E-----------------------------KKLTAHNGPVLCLNWHPNREWLATG 238 (839)
T ss_pred -------------------------H-----------------------------HHhhcccCceEEEeecCCCceeeec
Confidence 0 01445777888899999877 8999
Q ss_pred eCCCeEEEEcCCC-C--eeeeeecCCccEEEEEe--cC-CEEEEEec--CcEEEEEeCCCcc--cccccccccCEEEEEe
Q 003171 437 GANGLLLQWDPNG-N--RLQDFQYLPFAVQCLCT--FG-SQIWVGYM--NGIVQVLDLEGNL--LGGWVAHSSPVIKMAV 506 (842)
Q Consensus 437 s~DgtIrlWD~~g-~--~l~~l~~H~~~V~sls~--dG-~~LasGs~--DgtIrlWD~~g~~--i~~l~gH~~~V~sla~ 506 (842)
+.|++|||||.++ + .+.++. -..+|.++.. +- .+||+++. |-.|+|||++..+ -+++..|++.|+.+++
T Consensus 239 GRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W 317 (839)
T KOG0269|consen 239 GRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAW 317 (839)
T ss_pred CCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceec
Confidence 9999999999964 2 223332 1346777754 33 37888774 8899999998653 6899999999999997
Q ss_pred CC---CEEEEEcCCCCeeecccc
Q 003171 507 GA---GYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 507 dg---~~l~S~S~DgtIrvWd~~ 526 (842)
++ ..++|+|.|++|..=.+.
T Consensus 318 ~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 318 DSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred cCCCceeeEeecCccHHHHhhhh
Confidence 43 568899999998655443
No 126
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2.1e-15 Score=166.11 Aligned_cols=265 Identities=22% Similarity=0.285 Sum_probs=162.0
Q ss_pred ceeEEEEecCC--EEE-EecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCTEE--QLW-AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~~~--~l~-~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
.++|.+++... .|+ ++.|++|++|++++..... -+..++...|+. | .+||+|+++.+.+..++||
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~---------~~~~epi~tfra--H-~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSA---------EKDVEPILTFRA--H-EGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCcc---------ccceeeeEEEec--c-cCceEEEEecCCceEEEee
Confidence 46777776533 344 4679999999996532211 112233334443 3 8899999999999999999
Q ss_pred eCCCcEEEEECCCCccC---CCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 210 HRDGRIMCWKMNARLLD---SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~---~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
+.||+||.|++.. ..+ ...+....-++.||++.|+.+++|+... |+++|.|||+|+|+...... ..+.....+.
T Consensus 363 g~Dg~I~~w~~p~-n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g 440 (577)
T KOG0642|consen 363 GIDGTIRCWNLPP-NQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHG 440 (577)
T ss_pred ccCceeeeeccCC-CCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccC
Confidence 9999999998773 222 1223344567899999999999999765 99999999999999855333 1111111111
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccC
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (842)
..+ ++........+..++ .+---+.|..++.-+.+|.....
T Consensus 441 ~Pl---------------------------svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~---------- 483 (577)
T KOG0642|consen 441 YPL---------------------------SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS---------- 483 (577)
T ss_pred Ccc---------------------------eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC----------
Confidence 111 111111110000000 00111223333322222210000
Q ss_pred CCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC-CCcEEEEeCCCeE
Q 003171 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI-DGMIWTGGANGLL 442 (842)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~-dg~l~Sgs~DgtI 442 (842)
.+.++ ...+.-++.-| .+..+++..|++|
T Consensus 484 ----------------------------------------~~~~~----------~~~in~vVs~~~~~~~~~~hed~~I 513 (577)
T KOG0642|consen 484 ----------------------------------------PGPRR----------YPQINKVVSHPTADITFTAHEDRSI 513 (577)
T ss_pred ----------------------------------------Ccccc----------cCccceEEecCCCCeeEecccCCce
Confidence 00000 00011112222 2346889999999
Q ss_pred EEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Ccccccccccc
Q 003171 443 LQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (842)
Q Consensus 443 rlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (842)
+++|. +|+.+..+..|...|++++. .|-+|.+|+.|+.|++|.+. -.|+....+|.
T Consensus 514 r~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 514 RFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred ecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 99999 89999999999999999876 57799999999999999986 44666666664
No 127
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=2.1e-14 Score=165.11 Aligned_cols=198 Identities=15% Similarity=0.207 Sum_probs=140.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (842)
++-|+.|.|+ ..++|.|+|.|.|||||.+... .++..-.|.+-||||+|.|-.. ++|||-|+-||||+
T Consensus 369 t~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~---------~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWs 438 (712)
T KOG0283|consen 369 TADILDLSWS-KNNFLLSSSMDKTVRLWHPGRK---------ECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWS 438 (712)
T ss_pred chhheecccc-cCCeeEeccccccEEeecCCCc---------ceeeEEecCCeeEEEEecccCCCcEeecccccceEEee
Confidence 7899999999 5689999999999999999873 4455557999999999999653 89999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~ 347 (842)
+.. +.+..- -|+ ..-|+.+++.|+|.-+..|+. +.+++|++..-++...
T Consensus 439 I~d--~~Vv~W---------------~Dl-------------~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 439 ISD--KKVVDW---------------NDL-------------RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred cCc--CeeEee---------------hhh-------------hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 843 222111 111 123667788888877777774 5688998876554333
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
+..+. ... .+. .+ ++|+.+.+
T Consensus 489 ~~I~~-------------------------~~~--Kk~-------------------------------~~-~rITG~Q~ 509 (712)
T KOG0283|consen 489 FHIRL-------------------------HNK--KKK-------------------------------QG-KRITGLQF 509 (712)
T ss_pred eeEee-------------------------ccC--ccc-------------------------------cC-ceeeeeEe
Confidence 21110 000 010 11 24555555
Q ss_pred CCCC--cEEEEeCCCeEEEEcC-CCCeeeeeecCCc---cEE-EEEecCCEEEEEecCcEEEEEeCC
Q 003171 428 SIDG--MIWTGGANGLLLQWDP-NGNRLQDFQYLPF---AVQ-CLCTFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 428 s~dg--~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~---~V~-sls~dG~~LasGs~DgtIrlWD~~ 487 (842)
.|.. .+++.+.|..|||+|+ +-+++..|+|+.+ .+. ++..||++|++|+.|..|+||+..
T Consensus 510 ~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 510 FPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 4432 4777788999999999 6678888887543 233 355699999999999999999975
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=9e-14 Score=143.76 Aligned_cols=252 Identities=13% Similarity=0.192 Sum_probs=169.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t 271 (842)
..|..|.|+|.++.|..++.||++|+++.... ..+..--|..|+.+.+|.++.++++|+-||.||+.|+.+
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---------~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---------SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccch---------hhhhheecCCceeeeeccCCceEEEeccCceEEEEEecC
Confidence 46889999999999999999999999999873 233334589999999999988899999999999999987
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeec
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNI 350 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~ 350 (842)
+....... | ...++++........|.+++| ++|++||.+...+..++..
T Consensus 85 ~~~~~igt--------------------h----------~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~ 134 (323)
T KOG1036|consen 85 GNEDQIGT--------------------H----------DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ 134 (323)
T ss_pred Ccceeecc--------------------C----------CCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc
Confidence 54322111 1 335677777766778888885 6999999987444333321
Q ss_pred CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec----Ccccc----CCCce
Q 003171 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK----GGFGD----DNRRT 422 (842)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~----g~~~~----~~~~v 422 (842)
...+ +..+. .+..+++|..+.-..++.. -.++. -...+
T Consensus 135 ~kkV-y~~~v---------------------------------~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqt 180 (323)
T KOG1036|consen 135 GKKV-YCMDV---------------------------------SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQT 180 (323)
T ss_pred CceE-EEEec---------------------------------cCCEEEEeecCceEEEEEcccccchhhhccccceeEE
Confidence 1111 11110 1223345454433333321 11111 11245
Q ss_pred EEEEECCCCc-EEEEeCCCeEEEEcCC-C----CeeeeeecCC---------ccEEEEEecC--CEEEEEecCcEEEEEe
Q 003171 423 EALTTSIDGM-IWTGGANGLLLQWDPN-G----NRLQDFQYLP---------FAVQCLCTFG--SQIWVGYMNGIVQVLD 485 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs~DgtIrlWD~~-g----~~l~~l~~H~---------~~V~sls~dG--~~LasGs~DgtIrlWD 485 (842)
++++.-|++. .+.+|-||-|-+=..+ . +.-..|+.|. .+|++|++.. ..+|+|+.||.|-+||
T Consensus 181 R~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 181 RCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred EEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 6777767655 6778889977665542 2 3344566664 3688888764 4899999999999999
Q ss_pred CC-CcccccccccccCEEEEEe--CCCEEEEEcC
Q 003171 486 LE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLAN 516 (842)
Q Consensus 486 ~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~ 516 (842)
+. .+.+..+..-...|.++++ ||..||.++.
T Consensus 261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 87 4566666666677888885 7888887653
No 129
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.64 E-value=1.2e-14 Score=162.52 Aligned_cols=225 Identities=14% Similarity=0.088 Sum_probs=153.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC---C-EEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---D-LWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG---~-L~SgS~DgtIrv 266 (842)
...+.|++++|+|+.||+|..-|++|++++..- ++.....+|...|.|+.||..- + |+|||.|..|.|
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l--------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV 530 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL--------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHV 530 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhh--------hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEE
Confidence 557999999999999999999999999999874 5667789999999999999642 3 689999999999
Q ss_pred EeCCCcc-ceeecCCCceeeeEEEEeece-------------eecccce-eccce------eeeecCCEEEEEEcCCCCE
Q 003171 267 WPWEAIE-KALSLKPEERHTAALIVERSY-------------IDLRSHL-SVNGF------SSILTSDIKNLLSDHSRAK 325 (842)
Q Consensus 267 Wd~~t~~-~~l~~~~~~~~~~~l~~~~s~-------------~~l~~~~-~~~~~------~~~~s~~v~~las~~~~~~ 325 (842)
+|+...- ...++..+...+.++-+.... +.++... ...+. ..+....+.-++.++.-..
T Consensus 531 ~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~ 610 (1080)
T KOG1408|consen 531 YDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL 610 (1080)
T ss_pred EecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce
Confidence 9985411 111122222222222221111 1111100 00011 1112233445666665555
Q ss_pred EEE-eCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCC
Q 003171 326 VWS-AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD 404 (842)
Q Consensus 326 v~s-~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~ 404 (842)
+++ +.|+.|+|+|+++|+..++|++.-..
T Consensus 611 v~t~cQDrnirif~i~sgKq~k~FKgs~~~-------------------------------------------------- 640 (1080)
T KOG1408|consen 611 VVTVCQDRNIRIFDIESGKQVKSFKGSRDH-------------------------------------------------- 640 (1080)
T ss_pred EEEEecccceEEEeccccceeeeecccccC--------------------------------------------------
Confidence 544 44778888888888887777643211
Q ss_pred cEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcE
Q 003171 405 AVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGI 480 (842)
Q Consensus 405 ~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~Dgt 480 (842)
.+...-+...|.|. |++.+.|+++.++|. .|+|+.++.||+..|+.+.+ |-++|++.+.||.
T Consensus 641 --------------eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC 706 (1080)
T KOG1408|consen 641 --------------EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC 706 (1080)
T ss_pred --------------CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce
Confidence 01111233445554 888899999999999 89999999999999999865 6789999999999
Q ss_pred EEEEeCC
Q 003171 481 VQVLDLE 487 (842)
Q Consensus 481 IrlWD~~ 487 (842)
|-||.+.
T Consensus 707 IFvW~lp 713 (1080)
T KOG1408|consen 707 IFVWKLP 713 (1080)
T ss_pred EEEEECc
Confidence 9999964
No 130
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.64 E-value=5.3e-15 Score=155.86 Aligned_cols=112 Identities=18% Similarity=0.299 Sum_probs=96.4
Q ss_pred cccCCCceEEEEECCC--CcEEEEeCCCeEEEEcC-CC---CeeeeeecCCccEEEEEecCC--EEEEEecCcEEEEEeC
Q 003171 415 FGDDNRRTEALTTSID--GMIWTGGANGLLLQWDP-NG---NRLQDFQYLPFAVQCLCTFGS--QIWVGYMNGIVQVLDL 486 (842)
Q Consensus 415 ~~~~~~~v~al~~s~d--g~l~Sgs~DgtIrlWD~-~g---~~l~~l~~H~~~V~sls~dG~--~LasGs~DgtIrlWD~ 486 (842)
|.+|...|+.|.+||. +.++|||.||+|||||+ .+ .|+.+ +.|...|+.|+.+++ +||+|+.||+++|||+
T Consensus 253 f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDL 331 (440)
T KOG0302|consen 253 FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDL 331 (440)
T ss_pred ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEh
Confidence 5567788888999884 55899999999999999 56 45554 789999999998654 8999999999999998
Q ss_pred C----CcccccccccccCEEEEEeC---CCEEEEEcCCCCeeeccccC
Q 003171 487 E----GNLLGGWVAHSSPVIKMAVG---AGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 487 ~----g~~i~~l~gH~~~V~sla~d---g~~l~S~S~DgtIrvWd~~~ 527 (842)
+ ++++++++-|..+|++|.+. .+.++.+|.|..|.+||+..
T Consensus 332 R~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 332 RQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred hhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 5 57899999999999999974 66788999999999999764
No 131
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2.8e-14 Score=157.67 Aligned_cols=289 Identities=15% Similarity=0.130 Sum_probs=181.9
Q ss_pred eecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEE
Q 003171 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIK 265 (842)
Q Consensus 188 ~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIr 265 (842)
+| ++-|.|+.++|.|.+|+||+.||++|+|.+.+| .++.+++- -+.|.||+|+|.+. ++..+.+.++-
T Consensus 398 GH-tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--------Rcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 398 GH-TGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--------RCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred cc-CCeEEEEEecCCcceeeecCCCCcEEEEEeecc--------eEEEEEee-cceeEEEEecCCCCceeEEEEecCceE
Confidence 44 899999999999999999999999999999998 67766542 34799999999987 45555555566
Q ss_pred EEeCCCccceee---------cCCCceeeeEEEEeeceeecccc---eeccceeee--ecCCEEEEEEcCCCCEEEEeC-
Q 003171 266 IWPWEAIEKALS---------LKPEERHTAALIVERSYIDLRSH---LSVNGFSSI--LTSDIKNLLSDHSRAKVWSAG- 330 (842)
Q Consensus 266 vWd~~t~~~~l~---------~~~~~~~~~~l~~~~s~~~l~~~---~~~~~~~~~--~s~~v~~las~~~~~~v~s~s- 330 (842)
|-+..-+..... ...+.....+ .+.+... .-..++|.. ....++.+.-...|..+++..
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~------~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~ 541 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAA------VVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP 541 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCccc------ceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence 665432211100 0000000000 0000000 000011110 112233333333333333221
Q ss_pred ---CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEE
Q 003171 331 ---FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVR 407 (842)
Q Consensus 331 ---~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~ 407 (842)
.+.|.|.++..+....-|. +.......+.|.+.....++.++..|+
T Consensus 542 ~~~~~~VliHQLSK~~sQ~PF~-------------------------------kskG~vq~v~FHPs~p~lfVaTq~~vR 590 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKRKSQSPFR-------------------------------KSKGLVQRVKFHPSKPYLFVATQRSVR 590 (733)
T ss_pred CCCcceEEEEecccccccCchh-------------------------------hcCCceeEEEecCCCceEEEEeccceE
Confidence 1233344433222111010 011122245677766777888887777
Q ss_pred EEee-cC----ccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC--CCCeeeeeecCCccEEEEEecCC--EEEEEec
Q 003171 408 RVAA-KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCTFGS--QIWVGYM 477 (842)
Q Consensus 408 ~v~~-~g----~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~--~g~~l~~l~~H~~~V~sls~dG~--~LasGs~ 477 (842)
..+. ++ .+......|..+++.|.|- |+.|+.|+.+..+|+ ..+..+++..|...|+++++.++ .+++|+.
T Consensus 591 iYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sd 670 (733)
T KOG0650|consen 591 IYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSD 670 (733)
T ss_pred EEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecC
Confidence 7664 22 2233456788899999775 899999999999999 45788999999999999999887 8999999
Q ss_pred CcEEEEEeC------CCc----ccccccccccC----EEEEEeCCC--EEEEEcCCCCeeec
Q 003171 478 NGIVQVLDL------EGN----LLGGWVAHSSP----VIKMAVGAG--YIFTLANHGGIRGW 523 (842)
Q Consensus 478 DgtIrlWD~------~g~----~i~~l~gH~~~----V~sla~dg~--~l~S~S~DgtIrvW 523 (842)
||++.|+-. -.+ .+..++||.-. |....++++ +|+|++.||+||+|
T Consensus 671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 999999852 112 47889999876 777667665 79999999999998
No 132
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.63 E-value=1.9e-14 Score=145.81 Aligned_cols=196 Identities=17% Similarity=0.232 Sum_probs=148.2
Q ss_pred EEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCC
Q 003171 235 LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSD 313 (842)
Q Consensus 235 ~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~ 313 (842)
..++||..+++-|.+..+|. |+|++.|.++.||--..++..-++. || ++.
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~-------------------GH----------tGa 54 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD-------------------GH----------TGA 54 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec-------------------CC----------Cce
Confidence 45799999999999999999 5799999999999875555433332 22 345
Q ss_pred EEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEe
Q 003171 314 IKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF 392 (842)
Q Consensus 314 v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~ 392 (842)
|-++..+-+...+.+++ |++++|||+.||+++.++....
T Consensus 55 vW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~---------------------------------------- 94 (327)
T KOG0643|consen 55 VWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNS---------------------------------------- 94 (327)
T ss_pred EEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCC----------------------------------------
Confidence 66666666677777776 7899999999999877654211
Q ss_pred ecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCC------CeEEEEcCC-------C-CeeeeeecC
Q 003171 393 QRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN------GLLLQWDPN-------G-NRLQDFQYL 458 (842)
Q Consensus 393 ~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~D------gtIrlWD~~-------g-~~l~~l~~H 458 (842)
.|..+.|+.+|.++..+.| +.|-++|+. + +++..+..+
T Consensus 95 ----------------------------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 95 ----------------------------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred ----------------------------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence 1223345566665544444 467778773 2 346666667
Q ss_pred CccEEEE--EecCCEEEEEecCcEEEEEeCC-C-cccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 459 PFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-G-NLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 459 ~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g-~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.+.+++. .+.+++|++|..||.|..||++ | +++.+-.-|+..|+.|. +|..+.+++|.|.+.++||+.+
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence 7777765 4679999999999999999997 5 46788899999999986 5899999999999999999765
No 133
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=1.4e-14 Score=155.56 Aligned_cols=228 Identities=16% Similarity=0.147 Sum_probs=154.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEE------------------ecccCCcEEEEEEecCCC--EEEeeCC
Q 003171 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS------------------WQAHRGPVLSLCISSYGD--LWSGSEG 261 (842)
Q Consensus 202 dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~------------------l~gH~~~V~slafs~dG~--L~SgS~D 261 (842)
.|+++|.|+.|-.|.|||+.-.. ......+ -+||+.+|.+|++..+-+ |+|||.|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d-----~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD 265 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVD-----AVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD 265 (463)
T ss_pred CcceEEEeccCceeEEecccccc-----ccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC
Confidence 46799999999999999986431 1111111 247999999999987755 8999999
Q ss_pred CcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEc
Q 003171 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDA 339 (842)
Q Consensus 262 gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~ 339 (842)
.||++||++++++..++..+ ..+|.++...+... .+.+|+ +++++|.|.
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~-----------------------------~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHH-----------------------------GKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ceEEEEEcCCCCcceehhhc-----------------------------CCceeEEEecCCCceEEEeccccceEEeeec
Confidence 99999999987765444322 33455555544333 455666 578999998
Q ss_pred cCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCC
Q 003171 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (842)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (842)
+.-.. .... |+- .
T Consensus 317 R~~~~-------s~~~---------------------wk~---------------------------------------~ 329 (463)
T KOG0270|consen 317 RDPSN-------SGKE---------------------WKF---------------------------------------D 329 (463)
T ss_pred cCccc-------cCce---------------------EEe---------------------------------------c
Confidence 63110 0000 000 0
Q ss_pred CceEEEEECCCC--cEEEEeCCCeEEEEcC--CCCeeeeeecCCccEEEEEecC---CEEEEEecCcEEEEEeCCCcccc
Q 003171 420 RRTEALTTSIDG--MIWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCTFG---SQIWVGYMNGIVQVLDLEGNLLG 492 (842)
Q Consensus 420 ~~v~al~~s~dg--~l~Sgs~DgtIrlWD~--~g~~l~~l~~H~~~V~sls~dG---~~LasGs~DgtIrlWD~~g~~i~ 492 (842)
+.|+.+++.+.. .+++++.||+|+=+|+ .|+++-+++.|...|.+|+..+ ..+++++.|++|+||++.+..-+
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 112233333332 3567889999999999 3799999999999999998754 48999999999999998743322
Q ss_pred ccccccc---CEEEEEeCC---CEEEEEcCCCCeeeccccCCCC
Q 003171 493 GWVAHSS---PVIKMAVGA---GYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 493 ~l~gH~~---~V~sla~dg---~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
.-..|.- ...|.+.++ ..++.|+..+.+|+||+.+..+
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 2333432 234455443 4677888888999999876544
No 134
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.61 E-value=8.1e-15 Score=153.76 Aligned_cols=257 Identities=12% Similarity=0.120 Sum_probs=165.2
Q ss_pred EEecccCCcEEEEEEecCC--CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecC
Q 003171 235 LSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (842)
Q Consensus 235 ~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~ 312 (842)
..|.||++.|.+++=.|.. .++|||.||.||+||+....+..++..+ .+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH-----------------------------~G 110 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAH-----------------------------EG 110 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecc-----------------------------cC
Confidence 3568999999999999975 3789999999999999764443333222 22
Q ss_pred CEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeeccc-CCCcccccceEEEEEecCCCCccceeeeE
Q 003171 313 DIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSL-LPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (842)
Q Consensus 313 ~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~s~~~~~~~~~s~~~ 391 (842)
-|+-++.+. +..+.+|.|++|+.|.+.- .+++++.+.+... .++... ...+ ..+. . .+..
T Consensus 111 ~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~-gIdh~~~~~~F-----------aTcG---e--~i~I 171 (433)
T KOG0268|consen 111 LVRGICVTQ-TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYL-GIDHHRKNSVF-----------ATCG---E--QIDI 171 (433)
T ss_pred ceeeEEecc-cceEEecCCcceeeeeccC-Ccceeeecccccc-ccccccccccc-----------cccC---c--eeee
Confidence 344555543 5566667789999998764 4556665443221 000000 0000 0000 0 0112
Q ss_pred eecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--E
Q 003171 392 FQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--C 466 (842)
Q Consensus 392 ~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s 466 (842)
|+..+...+ ..+.=....+.++.|+|-.+ |++|.+|++|.|+|+ .+..++.... .-.-+.| .
T Consensus 172 WD~~R~~Pv------------~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~Iswn 238 (433)
T KOG0268|consen 172 WDEQRDNPV------------SSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWN 238 (433)
T ss_pred cccccCCcc------------ceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecC
Confidence 221110000 00111224566788888765 678889999999999 6766654432 1122344 4
Q ss_pred ecCCEEEEEecCcEEEEEeCC--CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCCCcchhhhhhccc
Q 003171 467 TFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGK 542 (842)
Q Consensus 467 ~dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~~d~~l~~~l~~r 542 (842)
|.+-.+.+|++|..++.+|.. ...+.+..+|.++|.+|++ -|+-++|||.|++|||+.+.- ..+|
T Consensus 239 PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~-----------~~SR 307 (433)
T KOG0268|consen 239 PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH-----------GHSR 307 (433)
T ss_pred ccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCC-----------Ccch
Confidence 545578889999999999987 5689999999999999985 577899999999999998643 3456
Q ss_pred ccccccccceeEEEEEEEeCCC
Q 003171 543 EFLYTRMENLKILAGTWNVGQG 564 (842)
Q Consensus 543 ~~~y~~~~~~~i~~~twNv~~~ 564 (842)
+.+|++... +|+++-|.+..+
T Consensus 308 diYhtkRMq-~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 308 DIYHTKRMQ-HVFCVKYSMDSK 328 (433)
T ss_pred hhhhHhhhh-eeeEEEEecccc
Confidence 666665444 689999998754
No 135
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.60 E-value=1.5e-13 Score=154.46 Aligned_cols=111 Identities=15% Similarity=0.205 Sum_probs=91.5
Q ss_pred cCCCceEEEEECCCCc-EEEEeCC-----CeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC
Q 003171 417 DDNRRTEALTTSIDGM-IWTGGAN-----GLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~-l~Sgs~D-----gtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (842)
+|...|.+++.+|+|. ++|++.. -.|+||+. +=...+.+.+|+-.|+-++ +||++|++.+.|+++.||...
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~ 602 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQ 602 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeee
Confidence 4777899999999999 5676643 25999999 4566778999999999875 589999999999999999864
Q ss_pred -Cc----ccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 488 -GN----LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 488 -g~----~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+. -....+.|+-.||.-. +++.+++|+|.|++|++|....
T Consensus 603 ~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 603 EDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred cccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 21 2345789999999876 5888999999999999998643
No 136
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.59 E-value=3.7e-14 Score=145.16 Aligned_cols=209 Identities=21% Similarity=0.258 Sum_probs=139.0
Q ss_pred ccCCcEEEEEEecC-CC-EEEeeCCCcEEEEeCCCccc-eeec-CCCceeeeEEEEeeceeecccceeccceeeeecCCE
Q 003171 239 AHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEK-ALSL-KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDI 314 (842)
Q Consensus 239 gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~t~~~-~l~~-~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v 314 (842)
-|.+.|+++.+.+. |+ ++||+.||.|-|||++.... .-+. .....+.. + ..+.++... .+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v-----------~-~~h~~~Hky----~i 104 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIV-----------A-KQHENGHKY----AI 104 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeec-----------c-ccCCcccee----ee
Confidence 57899999999884 66 78999999999999975320 0000 00000000 0 001111111 11
Q ss_pred EEE-EEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEe
Q 003171 315 KNL-LSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF 392 (842)
Q Consensus 315 ~~l-as~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~ 392 (842)
..+ -...+.+.+.+++ |.++|+||..|-+...+|+..+.+ .+-++++.+
T Consensus 105 ss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~V-YshamSp~a---------------------------- 155 (397)
T KOG4283|consen 105 SSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKV-YSHAMSPMA---------------------------- 155 (397)
T ss_pred eeeEEeeecCceeecccccceEEEeecccceeeEEeecCcee-ehhhcChhh----------------------------
Confidence 111 1233566666766 579999999998776666654432 111111100
Q ss_pred ecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cC
Q 003171 393 QRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FG 469 (842)
Q Consensus 393 ~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG 469 (842)
. ..-.+++|..|-.|+|-|+ .|.+-+++.||...|.++.. ..
T Consensus 156 ----------------------------------~-sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 156 ----------------------------------M-SHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred ----------------------------------h-cceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 0 0012677888889999999 79999999999999999964 44
Q ss_pred C-EEEEEecCcEEEEEeCC---C----------c---ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 470 S-QIWVGYMNGIVQVLDLE---G----------N---LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 470 ~-~LasGs~DgtIrlWD~~---g----------~---~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+ .||+|+.||+||+||+. | + .+++-.+|.+.|.++++ |+.++++.++|..+|+|+..+
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 4 78899999999999964 2 1 23456688899999985 899999999999999999654
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=3e-13 Score=139.74 Aligned_cols=271 Identities=16% Similarity=0.149 Sum_probs=161.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
...|+.|++-|.+||+|..||.|.+||+.+. ...+.+.+|..+|+|+++|+||+ |+|+|.|..|++||+..
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTF--------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEcccc--------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence 4889999999999999999999999999985 45567899999999999999998 78999999999999966
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecC
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNID 351 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~ 351 (842)
+.......-. ..+.+....+...-++++.-= ...-.+-+...+.. .+|..
T Consensus 97 gs~l~rirf~-------------------spv~~~q~hp~k~n~~va~~~---------~~sp~vi~~s~~~h-~~Lp~- 146 (405)
T KOG1273|consen 97 GSPLKRIRFD-------------------SPVWGAQWHPRKRNKCVATIM---------EESPVVIDFSDPKH-SVLPK- 146 (405)
T ss_pred CCceeEEEcc-------------------CccceeeeccccCCeEEEEEe---------cCCcEEEEecCCce-eeccC-
Confidence 5422111000 000000000111111111100 00001111111000 11110
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCc------cccC-CCceEE
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG------FGDD-NRRTEA 424 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~------~~~~-~~~v~a 424 (842)
+.+.... .+.+ ..-|..++..+++|+..|-..+-..-+ +.-. ...|..
T Consensus 147 -----------d~d~dln-------~sas-------~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~ 201 (405)
T KOG1273|consen 147 -----------DDDGDLN-------SSAS-------HGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQ 201 (405)
T ss_pred -----------CCccccc-------cccc-------cccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeE
Confidence 0000000 0000 012334456778888777554432111 1111 245666
Q ss_pred EEECCCCc-EEEEeCCCeEEEEcCC-----C---C--eeeeeec---CCccE-EEEEecCCEEEEEec-CcEEEEEeCC-
Q 003171 425 LTTSIDGM-IWTGGANGLLLQWDPN-----G---N--RLQDFQY---LPFAV-QCLCTFGSQIWVGYM-NGIVQVLDLE- 487 (842)
Q Consensus 425 l~~s~dg~-l~Sgs~DgtIrlWD~~-----g---~--~l~~l~~---H~~~V-~sls~dG~~LasGs~-DgtIrlWD~~- 487 (842)
+.++..|. ++.-+.|..||.+++. | + ..+.++. -..+= .|++-+|.|+.+|+. -..++||...
T Consensus 202 I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 202 IIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred EEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence 88888888 7899999999999873 2 1 1122221 01111 134557889988885 6789999987
Q ss_pred Ccccccccccc-cCEEEEEeCCCE--EEEEcCCCCeeeccccC
Q 003171 488 GNLLGGWVAHS-SPVIKMAVGAGY--IFTLANHGGIRGWNVTS 527 (842)
Q Consensus 488 g~~i~~l~gH~-~~V~sla~dg~~--l~S~S~DgtIrvWd~~~ 527 (842)
|.+++.|.|.. .....|.+++-. ++|. ..|+|++|....
T Consensus 282 GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 282 GSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 99999998887 455667776543 5555 678999998644
No 138
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.57 E-value=2.3e-13 Score=139.35 Aligned_cols=292 Identities=18% Similarity=0.182 Sum_probs=179.3
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcc-C-CCCCc--cee---EEecccCCcEEEEEEecC--CCEEEeeC
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLL-D-SDDGF--GEV---LSWQAHRGPVLSLCISSY--GDLWSGSE 260 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~-~-~~~~~--~~~---~~l~gH~~~V~slafs~d--G~L~SgS~ 260 (842)
.++|.+|.+++ .|+++.||+.||.|-+||++.... + ..-.. .++ ..-.+|+-+|.++-|=|- |-+.|+|.
T Consensus 43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSF 122 (397)
T KOG4283|consen 43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSF 122 (397)
T ss_pred CCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccc
Confidence 78899999998 689999999999999999987420 0 00000 010 112478888999988874 44679999
Q ss_pred CCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEc
Q 003171 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDA 339 (842)
Q Consensus 261 DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~ 339 (842)
|.|+||||..|.+....+..++.. . .| ....++.. ...|+.+.+ -.|+|-|+
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me~~V-Y------------sh------------amSp~a~s--HcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKMEGKV-Y------------SH------------AMSPMAMS--HCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred cceEEEeecccceeeEEeecCcee-e------------hh------------hcChhhhc--ceEEEEecCCCcEEEEec
Confidence 999999999886555444332210 0 00 01112221 234555554 37999999
Q ss_pred cCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEE-ee-------
Q 003171 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRV-AA------- 411 (842)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v-~~------- 411 (842)
++|.+-.+|++|.+.+-.++.++..+.-. .+++ +.+.+.+|+..+ +.|.+++ ..
T Consensus 176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vL--------atgs----aDg~irlWDiRr------asgcf~~lD~hn~k~~p 237 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVL--------ATGS----ADGAIRLWDIRR------ASGCFRVLDQHNTKRPP 237 (397)
T ss_pred cCCcceeeeccccCceEEEEeccCceeEE--------EecC----CCceEEEEEeec------ccceeEEeecccCccCc
Confidence 99999999999887554555554332211 1111 111223333211 0011111 00
Q ss_pred -cCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCC-eeeeee--cCCcc----EEEEEecCCEEEEEecCcEE
Q 003171 412 -KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGN-RLQDFQ--YLPFA----VQCLCTFGSQIWVGYMNGIV 481 (842)
Q Consensus 412 -~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~-~l~~l~--~H~~~----V~sls~dG~~LasGs~DgtI 481 (842)
..+-..|.++|..++++.||. +|+++.|..+++|+. +|+ -++.+- .|... +.--+.+...++---.++++
T Consensus 238 ~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~l 317 (397)
T KOG4283|consen 238 ILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSL 317 (397)
T ss_pred cccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeE
Confidence 001234778899999999987 899999999999998 664 233321 12221 11002222222222345889
Q ss_pred EEEeC-CCcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 482 QVLDL-EGNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 482 rlWD~-~g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.|+++ +|..++.|.+|-..|.+-+. +=+...+++-|+.|--|-...
T Consensus 318 all~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~l 366 (397)
T KOG4283|consen 318 ALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPAL 366 (397)
T ss_pred EEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccccc
Confidence 99986 58889999999888888775 445788999999999998643
No 139
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=6.6e-13 Score=153.51 Aligned_cols=233 Identities=19% Similarity=0.196 Sum_probs=166.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (842)
+..-+.+.++|+|..|.+++.||.||+|+..... .+..++.-|...|.+++... +.|++|+.+++|.++...
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-------e~P~ti~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-------EEPETIDISGELVSSIACYS-NHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-------cCCchhhccCceeEEEeecc-cceEEeeccceEEEeeCC
Confidence 5567889999999999999999999999866531 11222222778898888765 379999999999999986
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCC-cEEEEEccCCcEEEEee
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFALWDARTRELLKVFN 349 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~-tI~lWD~~tg~~l~~l~ 349 (842)
.++..- -+. ..+-.++.++++.+|..++.|++. .|++-++.+....+++
T Consensus 85 s~~~~~-------iL~----------------------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l- 134 (933)
T KOG1274|consen 85 SGEEDT-------ILA----------------------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL- 134 (933)
T ss_pred CCCccc-------eee----------------------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee-
Confidence 643210 011 113467888888888888888864 6877776554333322
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
.+|...|.+|.++|
T Consensus 135 ------------------------------------------------------------------rgh~apVl~l~~~p 148 (933)
T KOG1274|consen 135 ------------------------------------------------------------------RGHDAPVLQLSYDP 148 (933)
T ss_pred ------------------------------------------------------------------cccCCceeeeeEcC
Confidence 23445567788889
Q ss_pred CCc-EEEEeCCCeEEEEcC-CCCeeeeeec-------CCccEEE-E--EecCCEEEEEecCcEEEEEeCCC-ccccccc-
Q 003171 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQY-------LPFAVQC-L--CTFGSQIWVGYMNGIVQVLDLEG-NLLGGWV- 495 (842)
Q Consensus 430 dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~-------H~~~V~s-l--s~dG~~LasGs~DgtIrlWD~~g-~~i~~l~- 495 (842)
.+. |++.+.||+|++||+ ++.+..++.+ -...+.+ + .|+|..++.-..|++|++++..| .....+.
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc
Confidence 888 688889999999999 7888777764 1123332 2 46777777778999999999874 3333332
Q ss_pred -ccccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 496 -AHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 496 -gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
-|...+..+. +.|+|||+++.||.|-|||+.+
T Consensus 229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 3444455555 6899999999999999999876
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.56 E-value=1.2e-12 Score=140.98 Aligned_cols=216 Identities=14% Similarity=0.151 Sum_probs=140.0
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecCCC
Q 003171 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPE 281 (842)
Q Consensus 204 ~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~~~ 281 (842)
.+++|++.|+++++||+.++ +....+.+|.. +.+++|+|+|+ + ++++.|++|++||..+++....+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~--------~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~- 71 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL--------EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS- 71 (300)
T ss_pred cEEEEecCCCEEEEEECCCC--------ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-
Confidence 57889999999999999886 55666776654 67899999997 5 5778899999999976432211110
Q ss_pred ceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeee
Q 003171 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVD 359 (842)
Q Consensus 282 ~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (842)
......++.++++..++.+. ++.+++||+.+++++..+...
T Consensus 72 -----------------------------~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-------- 114 (300)
T TIGR03866 72 -----------------------------GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-------- 114 (300)
T ss_pred -----------------------------CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC--------
Confidence 01123455666676665443 578999999887654433210
Q ss_pred cccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeC
Q 003171 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA 438 (842)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~ 438 (842)
..+..++++|||. +++++.
T Consensus 115 ------------------------------------------------------------~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 115 ------------------------------------------------------------VEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred ------------------------------------------------------------CCcceEEECCCCCEEEEEec
Confidence 0112466788887 556665
Q ss_pred CC-eEEEEcC-CCCeeeeeecCCccEE--EEEecCCEEEEEe-cCcEEEEEeCC-Ccccccccccc-----cCE--EEEE
Q 003171 439 NG-LLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAHS-----SPV--IKMA 505 (842)
Q Consensus 439 Dg-tIrlWD~-~g~~l~~l~~H~~~V~--sls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~gH~-----~~V--~sla 505 (842)
++ .+..||. +++++..+..+ ..+. +++++|++|++++ .++.|++||++ ++++..+..+. ..+ ..++
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 213 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIK 213 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceE
Confidence 54 5677899 56665544322 2233 3456898886554 59999999997 56655554332 111 2343
Q ss_pred --eCCCEEE-EEcCCCCeeeccccC
Q 003171 506 --VGAGYIF-TLANHGGIRGWNVTS 527 (842)
Q Consensus 506 --~dg~~l~-S~S~DgtIrvWd~~~ 527 (842)
++++.++ +.+.+++|.+||+.+
T Consensus 214 ~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 214 LTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCC
Confidence 5777754 445677899999765
No 141
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=3.7e-13 Score=134.74 Aligned_cols=245 Identities=15% Similarity=0.220 Sum_probs=170.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc-CCCC-CcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL-DSDD-GFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~-~~~~-~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
..|.+-+++|-+++++.|+.+|+|-+..+..-.. ..+. .-..+...++|.++|+.|+|. |..|+||+. |.|+-|.+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-hhheeeccC-ceEEEeee
Confidence 3566678889999999999999999998754210 0011 112345569999999999998 445778865 99999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-CCEEEEeCCCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAGFLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s~~tI~lWD~~tg~~l~~l 348 (842)
...+++....+ .+.+...-. ...++-++++.+..++. +..+..++|..+.-||+++|+..++|
T Consensus 89 ~E~~es~~~K~-------------lwe~~~P~~---~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 89 NEEEESLATKR-------------LWEVKIPMQ---VDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred hhhhhhccchh-------------hhhhcCccc---cCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE
Confidence 65332211100 000000000 11234567888888754 45666777889999999999998888
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE-
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT- 427 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~- 427 (842)
.+|.... .+++-
T Consensus 153 rGHtDYv-------------------------------------------------------------------H~vv~R 165 (325)
T KOG0649|consen 153 RGHTDYV-------------------------------------------------------------------HSVVGR 165 (325)
T ss_pred cCCccee-------------------------------------------------------------------eeeeec
Confidence 7776532 11111
Q ss_pred CCCCcEEEEeCCCeEEEEcC-CCCeeeeeec---------C-CccEEEEEecCCEEEEEecCcEEEEEeCC-Ccc--ccc
Q 003171 428 SIDGMIWTGGANGLLLQWDP-NGNRLQDFQY---------L-PFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNL--LGG 493 (842)
Q Consensus 428 s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~---------H-~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~--i~~ 493 (842)
+..++++||++||++|+||. ++++++++.. | ..+|.+++.+...|+.|+ ...+.||.+. ..+ +-.
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEe
Confidence 34678999999999999999 7899888753 2 246888888889998875 5679999987 444 444
Q ss_pred ccccccCEEEEEeCCCEEEEEcCCCCeeeccc
Q 003171 494 WVAHSSPVIKMAVGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 494 l~gH~~~V~sla~dg~~l~S~S~DgtIrvWd~ 525 (842)
+.+| |.-+.++.+.+++++..+.|.-|.+
T Consensus 245 ipa~---v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 245 IPAR---VHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred cccc---eeEeeeecceEEEeccccceeeeee
Confidence 4454 6667788889999998888888874
No 142
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=3.9e-14 Score=156.24 Aligned_cols=79 Identities=23% Similarity=0.520 Sum_probs=67.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
...|..++|.|-...|++++.||++++|++..........++.+.+|.||.++|.|++++++++ ++||+.||+||.|++
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence 5678888998888999999999999999994321122346788999999999999999999998 899999999999997
No 143
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.55 E-value=1.2e-12 Score=149.89 Aligned_cols=334 Identities=11% Similarity=0.112 Sum_probs=210.1
Q ss_pred eEEEEec--CCEEEEe-c-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 135 LRTIVCT--EEQLWAG-G-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 135 ~~~l~~~--~~~l~~~-~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
+.+|.+. +..+.++ . .|.+-+||++.-..... ....| .++|..+.|-|..-.|+|++
T Consensus 247 VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v------------------~~nah-~~sv~~~~fl~~epVl~ta~ 307 (910)
T KOG1539|consen 247 VTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV------------------TRNAH-YGSVTGATFLPGEPVLVTAG 307 (910)
T ss_pred eeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee------------------eeccc-cCCcccceecCCCceEeecc
Confidence 3344443 5555553 3 36799999976433321 12233 55677777778888999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEe-cCCC-EEEeeCCCcEEEEeCCCcc--ce-----------
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCIS-SYGD-LWSGSEGGGIKIWPWEAIE--KA----------- 275 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs-~dG~-L~SgS~DgtIrvWd~~t~~--~~----------- 275 (842)
.|...|+|=.+++. ..-+.++.-.||+.|-.+|.|- ..|. +.+++.|++.|..++-... +.
T Consensus 308 ~DnSlk~~vfD~~d----g~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k 383 (910)
T KOG1539|consen 308 ADNSLKVWVFDSGD----GVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK 383 (910)
T ss_pred CCCceeEEEeeCCC----CcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence 99999999776552 1113344557999999999997 5676 7899999999999874210 00
Q ss_pred -eecC-C---CceeeeEEEEeec-------------------eeecccceeccceeeeec------CCEEEEEEcCCCCE
Q 003171 276 -LSLK-P---EERHTAALIVERS-------------------YIDLRSHLSVNGFSSILT------SDIKNLLSDHSRAK 325 (842)
Q Consensus 276 -l~~~-~---~~~~~~~l~~~~s-------------------~~~l~~~~~~~~~~~~~s------~~v~~las~~~~~~ 325 (842)
+... . .-.....+..+.. .|.++.. +.+....-+. ..+++++.+.+|..
T Consensus 384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~-~~G~~~L~~~~~~~~~~~~~av~vs~CGNF 462 (910)
T KOG1539|consen 384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK-TSGRHVLDPKRFKKDDINATAVCVSFCGNF 462 (910)
T ss_pred cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc-ccccEEecCccccccCcceEEEEEeccCce
Confidence 0000 0 0001111111110 0111110 1111111112 45788888999998
Q ss_pred EEEeCC-CcEEEEEccCCcEEEEeec---CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEe
Q 003171 326 VWSAGF-LSFALWDARTRELLKVFNI---DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMG 401 (842)
Q Consensus 326 v~s~s~-~tI~lWD~~tg~~l~~l~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g 401 (842)
+..|.. ++|-++++++|-..+.|.. |...+ ..++.-...+..+.+
T Consensus 463 ~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V-------------------------------~gla~D~~n~~~vsa 511 (910)
T KOG1539|consen 463 VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEV-------------------------------TGLAVDGTNRLLVSA 511 (910)
T ss_pred EEEeccCCeEEEEEcccCeeecccccCccccCce-------------------------------eEEEecCCCceEEEc
Confidence 888764 6899999999988777731 11110 011111112234555
Q ss_pred cCCcEEEEeec--Ccccc---CCCceEEEEECC-CCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEE
Q 003171 402 AADAVRRVAAK--GGFGD---DNRRTEALTTSI-DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQI 472 (842)
Q Consensus 402 ~~~~v~~v~~~--g~~~~---~~~~v~al~~s~-dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~L 472 (842)
..+|+...|.- ..+.. -...+..+.... .+.++.+..|-.|++.|. +-+.++.|.||++.|+++ ++||++|
T Consensus 512 ~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWl 591 (910)
T KOG1539|consen 512 GADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWL 591 (910)
T ss_pred cCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEE
Confidence 56676666651 12211 112233333332 245778888999999999 788999999999999977 4689999
Q ss_pred EEEecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCC-CCeeecc
Q 003171 473 WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANH-GGIRGWN 524 (842)
Q Consensus 473 asGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~D-gtIrvWd 524 (842)
++++.|++||+||+- |.++..+.- ..+..+|. +.|++|+++.-| ..|.+|-
T Consensus 592 isasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 592 ISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999999999999985 777776643 34555554 789999999988 7899996
No 144
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.55 E-value=9e-12 Score=135.71 Aligned_cols=294 Identities=17% Similarity=0.202 Sum_probs=183.6
Q ss_pred CCEEE-EecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 142 EEQLW-AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 142 ~~~l~-~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
...|. ...-+.+.+|+++....... ...|.. -. ..-|+|++|.++|.. +||.++|.|-||+.
T Consensus 212 d~nliit~Gk~H~~Fw~~~~~~l~k~--------------~~~fek-~e-kk~Vl~v~F~engdv-iTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 212 DPNLIITCGKGHLYFWTLRGGSLVKR--------------QGIFEK-RE-KKFVLCVTFLENGDV-ITGDSGGNILIWSK 274 (626)
T ss_pred CCcEEEEeCCceEEEEEccCCceEEE--------------eecccc-cc-ceEEEEEEEcCCCCE-EeecCCceEEEEeC
Confidence 44444 45678999999875432211 111211 11 347999999987765 69999999999998
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccce--eecCCCceeeeEEEEeeceeecc
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKA--LSLKPEERHTAALIVERSYIDLR 298 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~--l~~~~~~~~~~~l~~~~s~~~l~ 298 (842)
.+. +-..+-.+|.+.|.+++.-.+|.|+||+.|..|-+||- ...+. ..+..+
T Consensus 275 ~~~--------~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~-~y~k~r~~elPe~----------------- 328 (626)
T KOG2106|consen 275 GTN--------RISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDD-NYRKLRETELPEQ----------------- 328 (626)
T ss_pred CCc--------eEEeEeeecCCceEEEEEecCccEeecCccceEEeccc-cccccccccCchh-----------------
Confidence 663 33444459999999999999999999999999999993 21111 111110
Q ss_pred cceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEE
Q 003171 299 SHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (842)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (842)
.+.++.++-...+ +..++ .++|.-=.++++--+.++ +|+.....++
T Consensus 329 ------------~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v~-gh~delwgla------------------ 375 (626)
T KOG2106|consen 329 ------------FGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTVQ-GHGDELWGLA------------------ 375 (626)
T ss_pred ------------cCCeeEEecCCCc--EEEeeccceEEEeeecCCceEEEE-ecccceeeEE------------------
Confidence 2234555544333 33333 233433334443332222 2222111111
Q ss_pred ecCCCCccceeeeEeecCcceEEecCCcEEEEeecCc--ccc-CCCceEEEEECCCCcEEEEeCCCeEEEEcCCCCeeee
Q 003171 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG--FGD-DNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQD 454 (842)
Q Consensus 378 s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~--~~~-~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~~g~~l~~ 454 (842)
..+...+.++...+...++|.+.. +.. -...+.++.|.|-|.++.|+..|...+.|.+.+.+-+
T Consensus 376 -------------~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~ 442 (626)
T KOG2106|consen 376 -------------THPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVT 442 (626)
T ss_pred -------------cCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEE
Confidence 111122333444444444443211 111 1245678889999999999999988888985554444
Q ss_pred eecCCccEEEE--EecCCEEEEEecCcEEEEEeCC--Ccc-cccccccccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 455 FQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE--GNL-LGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 455 l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~--g~~-i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
+...+.++.++ +++|.+||.|+.|+.|.||-+. |+. .+.-+-|-.+|+.+.+ |++++.+-|.|--|-.|.
T Consensus 443 ~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 443 IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 44446777776 5689999999999999999875 543 3333344478998874 899999999999999994
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.54 E-value=2.6e-13 Score=146.04 Aligned_cols=256 Identities=16% Similarity=0.243 Sum_probs=157.0
Q ss_pred CCCCCCceeecCCCCCccccCceeEEEEecCCEEEEec-CCCEEEEeCCCCccccccccccccCC----CCCCCCCCeee
Q 003171 112 HPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKS----KGEDGTAPFKE 186 (842)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 186 (842)
.|+-|-|+|-.-+|+.+...|.++ .+|+ |..|-|||++-...... -+.+|.. +.......+..
T Consensus 172 lpafPLC~ewld~~~~~~~~gNyv----------AiGtmdp~IeIWDLDI~d~v~P--~~~LGs~~sk~~~k~~k~~~~~ 239 (463)
T KOG0270|consen 172 LPAFPLCIEWLDHGSKSGGAGNYV----------AIGTMDPEIEIWDLDIVDAVLP--CVTLGSKASKKKKKKGKRSNSA 239 (463)
T ss_pred ccCcchhhhhhhcCCCCCCCcceE----------EEeccCceeEEecccccccccc--ceeechhhhhhhhhhccccccc
Confidence 566666777666666665554444 3354 78999999953222111 0123311 11111111222
Q ss_pred eeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-C-EEEeeCCCc
Q 003171 187 SVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGG 263 (842)
Q Consensus 187 ~~~g~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~Dgt 263 (842)
+.| +.+|.+|++.-. ...|||||.|.||++||+++| ++..++..|.+.|.++.|.|.- . |+|||.|++
T Consensus 240 ~gH-Tdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g--------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~ 310 (463)
T KOG0270|consen 240 SGH-TDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG--------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT 310 (463)
T ss_pred ccc-hHHHHHHHhccccceeEEecCCCceEEEEEcCCC--------CcceehhhcCCceeEEEecCCCceEEEeccccce
Confidence 334 778888887653 378999999999999999998 6777888899999999999975 3 889999999
Q ss_pred EEEEeCCCcc---ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-CCEEEEeC-CCcEEEEE
Q 003171 264 IKIWPWEAIE---KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWD 338 (842)
Q Consensus 264 IrvWd~~t~~---~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s-~~tI~lWD 338 (842)
|++.|..... ..+++ .++|..++-.+. ...+.+++ +++++-.|
T Consensus 311 V~l~D~R~~~~s~~~wk~--------------------------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D 358 (463)
T KOG0270|consen 311 VALKDCRDPSNSGKEWKF--------------------------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFD 358 (463)
T ss_pred EEeeeccCccccCceEEe--------------------------------ccceEEEEecCCCceeEEEecCCceEEeee
Confidence 9999986311 11111 223333333322 12223333 46788888
Q ss_pred ccC-CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCcccc
Q 003171 339 ART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD 417 (842)
Q Consensus 339 ~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~ 417 (842)
++. |+++-++..|.+
T Consensus 359 ~R~~~~~vwt~~AHd~---------------------------------------------------------------- 374 (463)
T KOG0270|consen 359 IRNPGKPVWTLKAHDD---------------------------------------------------------------- 374 (463)
T ss_pred cCCCCCceeEEEeccC----------------------------------------------------------------
Confidence 875 344444433322
Q ss_pred CCCceEEEEEC--CCCcEEEEeCCCeEEEEcCCCCeeeeeecCC---ccEEEEEecC---CEEEEEecCcEEEEEeCC
Q 003171 418 DNRRTEALTTS--IDGMIWTGGANGLLLQWDPNGNRLQDFQYLP---FAVQCLCTFG---SQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 418 ~~~~v~al~~s--~dg~l~Sgs~DgtIrlWD~~g~~l~~l~~H~---~~V~sls~dG---~~LasGs~DgtIrlWD~~ 487 (842)
.|..|.++ .-|.+.+++.|++|++|+..+..-+....|. +...|++++. -.++.|+..+.++|||+.
T Consensus 375 ---~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 375 ---EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ---CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 22222222 2356889999999999998543322222332 2344555543 388889988899999975
No 146
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=3e-13 Score=135.65 Aligned_cols=237 Identities=14% Similarity=0.208 Sum_probs=150.2
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec-CCCeEEEEEcC--CCCEEEEEeCCCcEEE
Q 003171 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDE--ASGVVWSGHRDGRIMC 217 (842)
Q Consensus 142 ~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~V~~la~dp--dg~~LaSGs~DGtIrl 217 (842)
+.+|.. ++|++|||+........ .+. ..+.| .+||.-+++-. -|.+|||+|+||+|.|
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s-----------------~ll-~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQS-----------------KLL-AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCc-----------------eee-eEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 555654 78999999998542211 111 11223 89999999976 7899999999999999
Q ss_pred EECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC---EEEeeCCCcEEEEeCCCc-ccee-e-cCCCceeeeEEEEe
Q 003171 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAI-EKAL-S-LKPEERHTAALIVE 291 (842)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~---L~SgS~DgtIrvWd~~t~-~~~l-~-~~~~~~~~~~l~~~ 291 (842)
|+-++| ++.+...+.+|...|++|+|-|.+. |+.||.||.|.|-+.++. .-.. + ...+.
T Consensus 85 Wke~~g------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~--------- 149 (299)
T KOG1332|consen 85 WKEENG------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE--------- 149 (299)
T ss_pred EecCCC------chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc---------
Confidence 998775 4566777889999999999998754 689999999999988652 1000 0 00000
Q ss_pred eceeecccceeccceeeeecC-CEEEEEEcC--CCCEEEEeC-CCcEEEEEccCCcEE--EEeecCCceEeeeecccCCC
Q 003171 292 RSYIDLRSHLSVNGFSSILTS-DIKNLLSDH--SRAKVWSAG-FLSFALWDARTRELL--KVFNIDGQIENRVDMSLLPD 365 (842)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~-~v~~las~~--~~~~v~s~s-~~tI~lWD~~tg~~l--~~l~~~~~~~~~~~~s~~~~ 365 (842)
.-++.++-.|.. ....+-..+ .-.++++++ |..|+||+...++-+ ++
T Consensus 150 ---------~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~------------------ 202 (299)
T KOG1332|consen 150 ---------IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERT------------------ 202 (299)
T ss_pred ---------cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhh------------------
Confidence 011111111110 011111111 113577776 788999987664210 11
Q ss_pred cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC-----CcEEEEeCCC
Q 003171 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-----GMIWTGGANG 440 (842)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d-----g~l~Sgs~Dg 440 (842)
|.+|...|+.++..|. .+|+|+|.||
T Consensus 203 -------------------------------------------------l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 203 -------------------------------------------------LEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred -------------------------------------------------hhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 2233333444444432 3589999999
Q ss_pred eEEEEcCC--C-----CeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEe--CCCcc
Q 003171 441 LLLQWDPN--G-----NRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLD--LEGNL 490 (842)
Q Consensus 441 tIrlWD~~--g-----~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD--~~g~~ 490 (842)
+|.||... + +++++| ...+..+ ++.|..|++++.|..|.||- ++|+-
T Consensus 234 ~viIwt~~~e~e~wk~tll~~f---~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw 291 (299)
T KOG1332|consen 234 TVIIWTKDEEYEPWKKTLLEEF---PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKW 291 (299)
T ss_pred cEEEEEecCccCcccccccccC---CcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcE
Confidence 99999773 2 233332 3567766 45799999999999999996 45664
No 147
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.54 E-value=7.2e-13 Score=143.25 Aligned_cols=236 Identities=17% Similarity=0.216 Sum_probs=156.6
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCC-eeeeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcc
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAP-FKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLL 225 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~ 225 (842)
+..+.|.|||..+...... ..| +..| ++-.+| ...=+.|.+++. ...|+||+.|++|.+||+.....
T Consensus 144 t~~~dv~Vfd~tk~~s~~~--------~~~--~~~Pdl~L~gH-~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~ 212 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPK--------ASG--ECRPDLRLKGH-EKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESK 212 (422)
T ss_pred CCCCCEEEEEeccCCCccc--------ccc--cCCCceEEEee-cccccccccccccceeEeeccCCCcEEEEecccccc
Confidence 4467999999865322110 111 1112 122223 333455777764 47899999999999999987521
Q ss_pred CCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceec
Q 003171 226 DSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (842)
Q Consensus 226 ~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~ 303 (842)
+ .........+.+|+..|..++|++-.. +.|+++|+.+.|||+.+.+... .+. ..+|
T Consensus 213 ~-~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~------~~~-----------~~ah--- 271 (422)
T KOG0264|consen 213 E-DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP------SHS-----------VKAH--- 271 (422)
T ss_pred C-CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC------ccc-----------cccc---
Confidence 0 112334556789999999999999654 5799999999999997521100 000 0112
Q ss_pred cceeeeecCCEEEEEEcCCC-CEEEEeC-CCcEEEEEccCC-cEEEEeecCCceEeeeecccCCCcccccceEEEEEecC
Q 003171 304 NGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTR-ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSS 380 (842)
Q Consensus 304 ~~~~~~~s~~v~~las~~~~-~~v~s~s-~~tI~lWD~~tg-~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~ 380 (842)
+.++.|+++.+-+ ..|++++ |++|+|||+++= +++.+
T Consensus 272 -------~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~--------------------------------- 311 (422)
T KOG0264|consen 272 -------SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT--------------------------------- 311 (422)
T ss_pred -------CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee---------------------------------
Confidence 5678899998754 4677777 789999999752 11222
Q ss_pred CCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEeCCCeEEEEcCC--CCe-----
Q 003171 381 KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPN--GNR----- 451 (842)
Q Consensus 381 ~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~~--g~~----- 451 (842)
+.+|...|..|.+||+.. |+|++.|+.+.+||+. |+.
T Consensus 312 ----------------------------------~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed 357 (422)
T KOG0264|consen 312 ----------------------------------FEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED 357 (422)
T ss_pred ----------------------------------ccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence 223444455666777643 7899999999999993 432
Q ss_pred --------eeeeecCCccEEEEEec---CCEEEEEecCcEEEEEeCCCc
Q 003171 452 --------LQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLEGN 489 (842)
Q Consensus 452 --------l~~l~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~g~ 489 (842)
+-+--||...|..++.+ .-.|+|.+.|+.++||.....
T Consensus 358 a~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 358 AEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred hccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 23334799999988654 348999999999999997643
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.7e-12 Score=150.26 Aligned_cols=251 Identities=17% Similarity=0.241 Sum_probs=173.3
Q ss_pred CCCcccccccCCCcccccccccccC---CCCCCCceeecCCCCCccccCceeEEEEecCCEEEEe-cCCCEEEEeCCCCc
Q 003171 87 SSSLPEYIGKGGDIPMFKPPVRAAL---HPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAG-GENGLRVWNLKELY 162 (842)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~D~~vrvWdl~~~~ 162 (842)
..+-.|||-.+|.+|. ||.+- ..+.|+.++. .|.++..|++....|.++ .+++|.+|.+.++.
T Consensus 21 ~d~~gefi~tcgsdg~----ir~~~~~sd~e~P~ti~~---------~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 21 YDPDGEFICTCGSDGD----IRKWKTNSDEEEPETIDI---------SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred EcCCCCEEEEecCCCc----eEEeecCCcccCCchhhc---------cCceeEEEeecccceEEeeccceEEEeeCCCCC
Confidence 3566789988888776 45432 3356666554 457899999998877775 58899999997765
Q ss_pred cccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC
Q 003171 163 DESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG 242 (842)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~ 242 (842)
..+. .++| +-|+.+++++.+|+++|.||.|-.||+-++.+. ....+++||.+
T Consensus 88 ~~~i--------------L~Rf------tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~--------s~~~~lrgh~a 139 (933)
T KOG1274|consen 88 EDTI--------------LARF------TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS--------SQEKVLRGHDA 139 (933)
T ss_pred ccce--------------eeee------eccceEEEEecCCcEEEeecCceeEEEEecccc--------chheeecccCC
Confidence 4321 2233 458999999999999999999999999999886 56788999999
Q ss_pred cEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC
Q 003171 243 PVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH 321 (842)
Q Consensus 243 ~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~ 321 (842)
+|.+|.|+|.|. |++.+-||.|++|+++++....++..-.. .+.+. .+.-...++-.+
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k-------------------~n~~~--~s~i~~~~aW~P 198 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK-------------------DNEFI--LSRICTRLAWHP 198 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCc-------------------ccccc--ccceeeeeeecC
Confidence 999999999999 67999999999999987654433322110 00000 011223455566
Q ss_pred CCCEE-EEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEE
Q 003171 322 SRAKV-WSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (842)
Q Consensus 322 ~~~~v-~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~ 400 (842)
.++.+ +.+.+++|++++..+.+....|..+
T Consensus 199 k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~------------------------------------------------- 229 (933)
T KOG1274|consen 199 KGGTLAVPPVDNTVKVYSRKGWELQFKLRDK------------------------------------------------- 229 (933)
T ss_pred CCCeEEeeccCCeEEEEccCCceeheeeccc-------------------------------------------------
Confidence 64544 4445778888887776654443211
Q ss_pred ecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe
Q 003171 401 GAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT 467 (842)
Q Consensus 401 g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~ 467 (842)
.+...+..+.+||.|+ |++++.||.|-+||.+.-..+.+ ...|+|+++
T Consensus 230 ----------------~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~---~~~Vc~~aw 278 (933)
T KOG1274|consen 230 ----------------LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEF---KRAVCCEAW 278 (933)
T ss_pred ----------------ccccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccc---cceeEEEec
Confidence 0112245678999998 89999999999999953211222 245666653
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.48 E-value=6.5e-13 Score=148.13 Aligned_cols=260 Identities=15% Similarity=0.186 Sum_probs=157.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcce--eEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceee
Q 003171 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGE--VLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALS 277 (842)
Q Consensus 202 dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~--~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~ 277 (842)
...+||.+..||.|.++|...-. .+.++ ...|.+|.++|..+.+-| |+ |++++.|.|||+||+.+.+..-.
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~----fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~ 137 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIV----FRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGG 137 (720)
T ss_pred ccceEEEecCCCceeeecchhhh----cchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecc
Confidence 34689999999999999976531 11111 355789999999999999 75 78999999999999966321100
Q ss_pred cCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceE
Q 003171 278 LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIE 355 (842)
Q Consensus 278 ~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~ 355 (842)
. . ..|| ...++.+++.+.+..|++.+ |+.|.|||++-... ..+.-. .
T Consensus 138 ------~-~----------~~GH----------~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~-d~~e~~---~ 186 (720)
T KOG0321|consen 138 ------R-L----------NLGH----------TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV-DALEEF---D 186 (720)
T ss_pred ------e-e----------eccc----------ccccchhhhccCCCcceeeccCCCcEEEEEEeccch-hhHHHH---h
Confidence 0 0 0112 44567777777666555544 67899999864321 111000 0
Q ss_pred eeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEE
Q 003171 356 NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWT 435 (842)
Q Consensus 356 ~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~S 435 (842)
+........ . .... +.. +. ....+..+. +++ ...|+.+.|-.+..|+|
T Consensus 187 ~~~~~~~n~--~-ptps-----kp~---~k---------r~~k~kA~s---------~ti---~ssvTvv~fkDe~tlaS 234 (720)
T KOG0321|consen 187 NRIYGRHNT--A-PTPS-----KPL---KK---------RIRKWKAAS---------NTI---FSSVTVVLFKDESTLAS 234 (720)
T ss_pred hhhhccccC--C-CCCC-----chh---hc---------ccccccccc---------Cce---eeeeEEEEEeccceeee
Confidence 000000000 0 0000 000 00 000000000 011 12356677777778999
Q ss_pred EeC-CCeEEEEcC-CCC------eeee--eecC---CccEEEEEec--CCEEEEEecCcEEEEEeCCC---ccccccccc
Q 003171 436 GGA-NGLLLQWDP-NGN------RLQD--FQYL---PFAVQCLCTF--GSQIWVGYMNGIVQVLDLEG---NLLGGWVAH 497 (842)
Q Consensus 436 gs~-DgtIrlWD~-~g~------~l~~--l~~H---~~~V~sls~d--G~~LasGs~DgtIrlWD~~g---~~i~~l~gH 497 (842)
++. |++||+||+ +.. .++. +..| ...+.+|..| |.+|.+.+.|++|.+||+.+ ..+..+.+|
T Consensus 235 aga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~ 314 (720)
T KOG0321|consen 235 AGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGK 314 (720)
T ss_pred ccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCc
Confidence 887 999999999 432 2222 2223 2346677665 78888888899999999863 356666666
Q ss_pred ccC---EEE-EEeCCCEEEEEcCCCCeeeccccCCC
Q 003171 498 SSP---VIK-MAVGAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 498 ~~~---V~s-la~dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
... |.+ +.+|+.+++||+.|..+.+|.+.++.
T Consensus 315 ~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 315 LNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred ccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 432 333 44899999999999999999987653
No 150
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.48 E-value=1.3e-12 Score=145.38 Aligned_cols=261 Identities=14% Similarity=0.202 Sum_probs=189.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
.|..++|-|||..|+.+.. ..+-++|.+.| ....+++||.+.|++|+++.||+ ++||+.|+.|-+|+-.-
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG--------~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDG--------TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCc--------ccccccccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence 6888999999988777654 46779999988 67889999999999999999998 68999999999998632
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecC
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNID 351 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~ 351 (842)
+..+++ ++...+.|+.+.|....+++++-.-+-+|......+.+.-. .
T Consensus 85 -EG~LkY------------------------------SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~ks-s 132 (1081)
T KOG1538|consen 85 -EGILKY------------------------------SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKS-S 132 (1081)
T ss_pred -cceeee------------------------------ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhh-h
Confidence 111211 11445778888888888888876667788776544322100 0
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee-----cCccc---cCCCceE
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-----KGGFG---DDNRRTE 423 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-----~g~~~---~~~~~v~ 423 (842)
. + ..+.....++...++|+.+|...+.. ++... +.+..|.
T Consensus 133 ~--------------------R------------~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiw 180 (1081)
T KOG1538|consen 133 S--------------------R------------IICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIW 180 (1081)
T ss_pred e--------------------e------------EEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCce
Confidence 0 0 00011122344567788887766653 22222 3667889
Q ss_pred EEEECCCC------cEEEEeCCCeEEEEcCCCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCCCccccccc
Q 003171 424 ALTTSIDG------MIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEGNLLGGWV 495 (842)
Q Consensus 424 al~~s~dg------~l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g~~i~~l~ 495 (842)
+++++|.. .++......|+-++.+.|+.+..-+.-.-.-.|+ .++|.++..|+.|+.+.++-.+|-.+.++.
T Consensus 181 si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg 260 (1081)
T KOG1538|consen 181 SICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVG 260 (1081)
T ss_pred EEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeecc
Confidence 99998752 3677777888988888887664222112223455 458999999999999999999998888888
Q ss_pred ccccCEEEEE--eCCCEEEEEcCCCCeeecccc
Q 003171 496 AHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 496 gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~ 526 (842)
....+||+|+ +++++++-|..||||-.+++.
T Consensus 261 ~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 261 EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 8889999987 688999999999999999964
No 151
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.46 E-value=9.4e-12 Score=127.55 Aligned_cols=246 Identities=16% Similarity=0.183 Sum_probs=163.6
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCC-------cEEEEECCCCcc-CCCCCcceeEEec-ccCCcEEEEEEecCCCEEEeeC
Q 003171 191 VSSVMCMVGDEA-SGVVWSGHRDG-------RIMCWKMNARLL-DSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLWSGSE 260 (842)
Q Consensus 191 ~~~V~~la~dpd-g~~LaSGs~DG-------tIrlWdl~~g~~-~~~~~~~~~~~l~-gH~~~V~slafs~dG~L~SgS~ 260 (842)
.+.|..++.+|. .++|+|...|. .+-||.+..... .....++++..|. .|-+.|.||.|.|++.-..+-.
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~ 142 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD 142 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence 678999999984 46777766542 577999876421 0111233444443 5567999999999987333334
Q ss_pred CCcEEEEeCCCcccee-ecC-CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEE
Q 003171 261 GGGIKIWPWEAIEKAL-SLK-PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWD 338 (842)
Q Consensus 261 DgtIrvWd~~t~~~~l-~~~-~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD 338 (842)
|..|-+|+++...+.. .+. .....+. +....|..+ | .+++..|++.++.++..||
T Consensus 143 dn~i~l~~l~ess~~vaev~ss~s~e~~-------------~~ftsg~Ws-p---------HHdgnqv~tt~d~tl~~~D 199 (370)
T KOG1007|consen 143 DNNIVLWSLDESSKIVAEVLSSESAEMR-------------HSFTSGAWS-P---------HHDGNQVATTSDSTLQFWD 199 (370)
T ss_pred cCceEEEEcccCcchheeeccccccccc-------------ceecccccC-C---------CCccceEEEeCCCcEEEEE
Confidence 8999999997643311 000 0000000 000011000 0 2356677777888999999
Q ss_pred ccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccC
Q 003171 339 ARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (842)
Q Consensus 339 ~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~ 418 (842)
++|-++.-... ..|
T Consensus 200 ~RT~~~~~sI~------------------------------------------------------------------dAH 213 (370)
T KOG1007|consen 200 LRTMKKNNSIE------------------------------------------------------------------DAH 213 (370)
T ss_pred ccchhhhcchh------------------------------------------------------------------hhh
Confidence 98754321110 013
Q ss_pred CCceEEEEECCCCc--EEEEeCCCeEEEEcC--CCCeeeeeecCCccEEEEEec---CCEEEEEecCcEEEEEeCC--C-
Q 003171 419 NRRTEALTTSIDGM--IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE--G- 488 (842)
Q Consensus 419 ~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~--~g~~l~~l~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~--g- 488 (842)
.+.|..+-|.|+.+ |++|+.||.||+||. +...++++.+|+.+|.++.+. .+.|.+|++|..|.||... .
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 33455566777765 789999999999999 357899999999999999764 5689999999999999621 0
Q ss_pred ---------------------------cccccccccccCEEEEEe---CCCEEEEEcCCCCeeeccc
Q 003171 489 ---------------------------NLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 489 ---------------------------~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrvWd~ 525 (842)
.++.++..|.+.|+++++ |+=.++|.|.||.+.|=.+
T Consensus 294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 135578899999999996 6667889999999877543
No 152
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.46 E-value=1.5e-11 Score=138.54 Aligned_cols=316 Identities=16% Similarity=0.166 Sum_probs=183.4
Q ss_pred EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCC---EEEEEeCCCcEEEEE
Q 003171 144 QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG---VVWSGHRDGRIMCWK 219 (842)
Q Consensus 144 ~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~---~LaSGs~DGtIrlWd 219 (842)
.+++ |....|-+||-.+.... ....+| ..+|.|+.+=|..+ .++||+.|+.|++|.
T Consensus 26 ~~vafGa~~~Iav~dp~k~~i~-------------------t~l~GH-~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~ 85 (764)
T KOG1063|consen 26 GLVAFGAGPAIAVADPEKILIV-------------------TTLDGH-VARVNCVHWLPTSEIVAEMVSGDSDGRVILWK 85 (764)
T ss_pred ceEEecCCceEEEeCcccceeE-------------------EeccCC-ccceEEEEEcccccccceEEEccCCCcEEEEE
Confidence 3444 77789999997653111 112233 88999999988777 799999999999999
Q ss_pred CCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEe-eCCCcEEEEeCCCcc--c--e----------eec--CC-C
Q 003171 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSG-SEGGGIKIWPWEAIE--K--A----------LSL--KP-E 281 (842)
Q Consensus 220 l~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~Sg-S~DgtIrvWd~~t~~--~--~----------l~~--~~-~ 281 (842)
+.. ..+.++.+++||...+.++ ...-...++ +.|+++.+|+.+..+ . . +++ .. .
T Consensus 86 l~~------~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~ 157 (764)
T KOG1063|consen 86 LRD------EYLIKIYTIQGHCKECVCV--VARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNN 157 (764)
T ss_pred Eee------hheEEEEeecCcceeEEEE--EeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccC
Confidence 984 2346677889987776655 433334443 789999999984322 0 0 111 11 0
Q ss_pred ceeeeEEEEeeceeecccceeccce---ee--eecCCEEEEEEcCC---CCEEEEeC-CCcEEEEEccCCcEEEEeecCC
Q 003171 282 ERHTAALIVERSYIDLRSHLSVNGF---SS--ILTSDIKNLLSDHS---RAKVWSAG-FLSFALWDARTRELLKVFNIDG 352 (842)
Q Consensus 282 ~~~~~~l~~~~s~~~l~~~~~~~~~---~~--~~s~~v~~las~~~---~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~ 352 (842)
...+.++-...-.+.+.+.. .... +. -+..-|+.+++... ...|+|++ |..||||.+.-+......
T Consensus 158 ~~~lla~Ggs~~~v~~~s~~-~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~---- 232 (764)
T KOG1063|consen 158 KTFLLACGGSKFVVDLYSSS-ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSN---- 232 (764)
T ss_pred CcEEEEecCcceEEEEeccC-CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccc----
Confidence 00111000000011221111 0000 00 01333555555432 33666666 678999987432211100
Q ss_pred ceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC-
Q 003171 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG- 431 (842)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg- 431 (842)
..+..... .. +... |. ...+ -.+++....-+.+|...|.++.+.|++
T Consensus 233 ~~e~~~t~----------------~~----~~~~----f~------~l~~--i~~~is~eall~GHeDWV~sv~W~p~~~ 280 (764)
T KOG1063|consen 233 EREDSLTT----------------LS----NLPV----FM------ILEE--IQYRISFEALLMGHEDWVYSVWWHPEGL 280 (764)
T ss_pred cccccccc----------------cc----CCce----ee------eeee--EEEEEehhhhhcCcccceEEEEEccchh
Confidence 00000000 00 0000 00 0000 012222233345788888899999999
Q ss_pred cEEEEeCCCeEEEEcCC---CC-----eeeeeecCCccEEE-E-EecCCEEEEEecCcEEEEEeCC--C--ccccccccc
Q 003171 432 MIWTGGANGLLLQWDPN---GN-----RLQDFQYLPFAVQC-L-CTFGSQIWVGYMNGIVQVLDLE--G--NLLGGWVAH 497 (842)
Q Consensus 432 ~l~Sgs~DgtIrlWD~~---g~-----~l~~l~~H~~~V~s-l-s~dG~~LasGs~DgtIrlWD~~--g--~~i~~l~gH 497 (842)
.|+|+|.|+++.+|... |- ++..+-|....-.. + ++++..|++-+..|..++|-.+ + .+.....||
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH 360 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH 360 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc
Confidence 59999999999999872 32 33444333333333 2 4577888888889999999843 2 345677899
Q ss_pred ccCEEEEEeC--CCEEEEEcCCCCeeecc
Q 003171 498 SSPVIKMAVG--AGYIFTLANHGGIRGWN 524 (842)
Q Consensus 498 ~~~V~sla~d--g~~l~S~S~DgtIrvWd 524 (842)
.+.|..|+++ |++++|+|.|.|-|++-
T Consensus 361 ~~~V~dv~W~psGeflLsvs~DQTTRlFa 389 (764)
T KOG1063|consen 361 VDGVKDVDWDPSGEFLLSVSLDQTTRLFA 389 (764)
T ss_pred cccceeeeecCCCCEEEEeccccceeeec
Confidence 9999999976 88999999999999975
No 153
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.46 E-value=7.8e-12 Score=138.74 Aligned_cols=107 Identities=17% Similarity=0.215 Sum_probs=89.8
Q ss_pred ceEEEEECC--CCcEEEEeCCCeEEEEcC-C-C------CeeeeeecCCccEEEEEec---CCEEEEEecCcEEEEEeCC
Q 003171 421 RTEALTTSI--DGMIWTGGANGLLLQWDP-N-G------NRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 421 ~v~al~~s~--dg~l~Sgs~DgtIrlWD~-~-g------~~l~~l~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~ 487 (842)
.|..+.+.| +.+|+.++.||.|+||.+ . | ..-..+++|...|++|.+. ...|++++.|-||+|||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 355566665 235999999999999998 3 3 2345678999999999764 4689999999999999997
Q ss_pred -CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 488 -GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 488 -g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
++....|.||++.|.++++ ||+.++|.+.||+||+++-++
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 7788889999999999985 899999999999999998654
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.9e-11 Score=126.49 Aligned_cols=115 Identities=12% Similarity=0.126 Sum_probs=79.5
Q ss_pred cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC--CCCEEEEEeCCCcEEE
Q 003171 141 TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWSGHRDGRIMC 217 (842)
Q Consensus 141 ~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp--dg~~LaSGs~DGtIrl 217 (842)
.++++.+ ++|.+|+|||+.+...... -++. -..| .++|..+.+-+ =|+.||++|+|++++|
T Consensus 24 ~GRRmAtCSsDq~vkI~d~~~~s~~W~-------------~Ts~--Wrah-~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 24 YGRRMATCSSDQTVKIWDSTSDSGTWS-------------CTSS--WRAH-DGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCceeeeccCCCcEEEEeccCCCCceE-------------Eeee--EEec-CCcEEEEEecCccccceEEEEecCCceee
Confidence 4778887 6799999999744221110 0011 1133 78899998864 4799999999999999
Q ss_pred EECCCCccC-CCCCcceeEEecccCCcEEEEEEecCC--C-EEEeeCCCcEEEEeCCC
Q 003171 218 WKMNARLLD-SDDGFGEVLSWQAHRGPVLSLCISSYG--D-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 218 Wdl~~g~~~-~~~~~~~~~~l~gH~~~V~slafs~dG--~-L~SgS~DgtIrvWd~~t 271 (842)
|.=....-+ ...+...+.++..-+..|+.|.|.|-- - |++++.||+|||++.-.
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d 145 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD 145 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence 974211000 012334455667778999999999964 2 78999999999999744
No 155
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.45 E-value=1.6e-11 Score=131.83 Aligned_cols=230 Identities=13% Similarity=0.130 Sum_probs=166.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.-.|+.+.++|+...++++|.|-.||+|..... .+......|.++|+.+...|.|+ |+++|.|++.-.-|.
T Consensus 261 ~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~--------s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~ 332 (506)
T KOG0289|consen 261 TKKITSVKFHKDLDTVITASADEIIRVWSVPLS--------SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI 332 (506)
T ss_pred ceEEEEEEeccchhheeecCCcceEEeeccccc--------cCccccccccccceeeeeccCCcEEEEecCCceEEEEEc
Confidence 568999999999999999999999999998775 45566789999999999999998 899999999988888
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.++........+. . .-.+.+.++.++|-.+..+. ++.++|||+.++.....|
T Consensus 333 ~~g~~lt~vs~~~---------------------s------~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F 385 (506)
T KOG0289|consen 333 SSGSQLTVVSDET---------------------S------DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF 385 (506)
T ss_pred cCCcEEEEEeecc---------------------c------cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC
Confidence 7654322211100 0 11356677877777776666 568999999998876667
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee-c-----Cccc-cCCCc
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-K-----GGFG-DDNRR 421 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~-----g~~~-~~~~~ 421 (842)
.+|...+ .++.|..++-...+++.++-.++|. + .++. .....
T Consensus 386 pght~~v-------------------------------k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~ 434 (506)
T KOG0289|consen 386 PGHTGPV-------------------------------KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKE 434 (506)
T ss_pred CCCCCce-------------------------------eEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccc
Confidence 6654432 2356666666666677776333333 1 1111 23346
Q ss_pred eEEEEECCCCc-EEEEeCCCeEEEEcC-C--CCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeC
Q 003171 422 TEALTTSIDGM-IWTGGANGLLLQWDP-N--GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 422 v~al~~s~dg~-l~Sgs~DgtIrlWD~-~--g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~ 486 (842)
+.++.|++-|+ |++++.|=.|.+.+- + -.++.++..|++..+++.+ ..+++++++.|..++|+-+
T Consensus 435 v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 435 VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 88999999998 677766655555554 2 2577778888888888877 4579999999999988754
No 156
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=2.7e-11 Score=121.60 Aligned_cols=179 Identities=18% Similarity=0.247 Sum_probs=126.5
Q ss_pred CceeEEEEecCCEEEEecCCCEEEEeCCCCcc-ccccccccccCCCCCCCCCCeee-eeecCCCeEEEEEcCCCCEEEEE
Q 003171 132 GCFLRTIVCTEEQLWAGGENGLRVWNLKELYD-ESESDSVSVSKSKGEDGTAPFKE-SVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 132 ~~~~~~l~~~~~~l~~~~D~~vrvWdl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~V~~la~dpdg~~LaSG 209 (842)
.-+++.++++.+.|..+.||-||=|.-.+... ..+ .+-=+...|++. .+. ...|.+|-++|..+-|..+
T Consensus 62 dgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~~~--------K~lwe~~~P~~~~~~e-vPeINam~ldP~enSi~~A 132 (325)
T KOG0649|consen 62 DGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESLAT--------KRLWEVKIPMQVDAVE-VPEINAMWLDPSENSILFA 132 (325)
T ss_pred CCCeeeeeeehhheeeccCceEEEeeehhhhhhccc--------hhhhhhcCccccCccc-CCccceeEeccCCCcEEEe
Confidence 34788999998899999999999998754332 111 111122233322 111 4468999999988888888
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEE-ecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI-SSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slaf-s~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
+-|+.+.-||+++| +-.++++||++.|.+|+- +.+++++||++|||+||||..++++...+.+... -.
T Consensus 133 gGD~~~y~~dlE~G--------~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~-~~-- 201 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDG--------RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN-PN-- 201 (325)
T ss_pred cCCeEEEEEEecCC--------EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccC-hh--
Confidence 89999999999998 677889999999999998 7778999999999999999988654333221100 00
Q ss_pred EEeeceeecccceeccceeeee--cCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeec
Q 003171 289 IVERSYIDLRSHLSVNGFSSIL--TSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~--s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~ 350 (842)
+..| ..-+-+++. +...+.|++...+.||.+++-++..+|..
T Consensus 202 ------------------~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 202 ------------------LLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred ------------------hcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEEEec
Confidence 0011 112334444 45678888878899999999888777653
No 157
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.43 E-value=1.1e-11 Score=128.80 Aligned_cols=252 Identities=15% Similarity=0.192 Sum_probs=169.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc----CCCCCcceeEEecc-cCCcEEEEEEe-------cCCCE-EEeeC
Q 003171 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLL----DSDDGFGEVLSWQA-HRGPVLSLCIS-------SYGDL-WSGSE 260 (842)
Q Consensus 194 V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~----~~~~~~~~~~~l~g-H~~~V~slafs-------~dG~L-~SgS~ 260 (842)
...+.++|||.-|.+-+.|..+++|++..... +....+.+..+++= -...|..-++= |+..| ++.|.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 34578999999999999999999999865311 00011111111111 12345555542 44445 57889
Q ss_pred CCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEc-
Q 003171 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA- 339 (842)
Q Consensus 261 DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~- 339 (842)
|.-|++||.-+++...++..... +.. -....+|+++++|..|.++-..+|+++|+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh-------------------~de-----~taAhsL~Fs~DGeqlfaGykrcirvFdt~ 187 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDH-------------------QDE-----YTAAHSLQFSPDGEQLFAGYKRCIRVFDTS 187 (406)
T ss_pred cCceeeeeccccccccchhhhhh-------------------HHh-----hhhheeEEecCCCCeEeecccceEEEeecc
Confidence 99999999987654433322111 111 01234788999999999887789999998
Q ss_pred cCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCC
Q 003171 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (842)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (842)
++|....+.. ...+ |. .+..
T Consensus 188 RpGr~c~vy~-----------------------------t~~~------------------------------~k-~gq~ 207 (406)
T KOG2919|consen 188 RPGRDCPVYT-----------------------------TVTK------------------------------GK-FGQK 207 (406)
T ss_pred CCCCCCcchh-----------------------------hhhc------------------------------cc-cccc
Confidence 5554211110 0000 00 0122
Q ss_pred CceEEEEECCCC--cEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEec-CcEEEEEeCC--Cccc
Q 003171 420 RRTEALTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYM-NGIVQVLDLE--GNLL 491 (842)
Q Consensus 420 ~~v~al~~s~dg--~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~-DgtIrlWD~~--g~~i 491 (842)
+.+.+++++|-. .++.|+--.++-|+.- .++.++.+-+|.+.|+-+ .+||.+|++|+. |-.|-+||++ +..+
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 334567777753 4788887778888877 567888888999999976 569999999995 8899999987 5678
Q ss_pred ccccccccCE-----EEEEeCCCEEEEEcCCCCeeeccccCCC
Q 003171 492 GGWVAHSSPV-----IKMAVGAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 492 ~~l~gH~~~V-----~sla~dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
-.|..|.+.- ..++++++.|+||++||.|++||+..++
T Consensus 288 ~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 8888887732 2345789999999999999999987754
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=6.1e-13 Score=157.29 Aligned_cols=242 Identities=16% Similarity=0.215 Sum_probs=171.5
Q ss_pred CeEEEEEcCCC----CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEE
Q 003171 193 SVMCMVGDEAS----GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKI 266 (842)
Q Consensus 193 ~V~~la~dpdg----~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrv 266 (842)
.-.+|+|.+-| ++||.|..||.|.+||...-. .......+.+..-|+++|..|-|.+.+. |+||+.||.|.|
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~--~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII--ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhc--cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 44567777655 459999999999999976510 0122234566788999999999999865 789999999999
Q ss_pred EeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeCC-CcEEEEEccCCcE
Q 003171 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAGF-LSFALWDARTREL 344 (842)
Q Consensus 267 Wd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s~-~tI~lWD~~tg~~ 344 (842)
||+...+..+... . . .+..+|++++=...-. .++|++. +.+.|||++..+.
T Consensus 144 WDlnn~~tP~~~~-~------------------~--------~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p 196 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG-S------------------Q--------APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP 196 (1049)
T ss_pred eccCCcCCCCCCC-C------------------C--------CCcccceEeccchhhhHHhhccCCCCCceeccccCCCc
Confidence 9996533222110 0 0 0134566655432222 3455554 4788999987665
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
+..|..++. ...+..
T Consensus 197 ii~ls~~~~-----------------------------------------------------------------~~~~S~ 211 (1049)
T KOG0307|consen 197 IIKLSDTPG-----------------------------------------------------------------RMHCSV 211 (1049)
T ss_pred ccccccCCC-----------------------------------------------------------------ccceee
Confidence 433321110 001223
Q ss_pred EEECCCC--cEEEEeCCC---eEEEEcCC--CCeeeeeecCCccEEEEEe---cCCEEEEEecCcEEEEEeCC-Cccccc
Q 003171 425 LTTSIDG--MIWTGGANG---LLLQWDPN--GNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (842)
Q Consensus 425 l~~s~dg--~l~Sgs~Dg---tIrlWD~~--g~~l~~l~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (842)
|++.|+. +|++++.|. .|.+||+. ...++++++|...|.+++. |.++|+|++.|+.|.+|+.+ |+.+..
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~ 291 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE 291 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee
Confidence 5566665 377777654 69999993 5788999999999999964 55799999999999999997 788999
Q ss_pred ccccccCEEEEEe---CCCEEEEEcCCCCeeeccccCC
Q 003171 494 WVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 494 l~gH~~~V~sla~---dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
+....+++..+.+ ++..++.++-||.|.|..+...
T Consensus 292 ~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 292 LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred cCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 9888899999986 5567889999999999998763
No 159
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.42 E-value=1.8e-12 Score=147.33 Aligned_cols=217 Identities=15% Similarity=0.234 Sum_probs=150.0
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~ 226 (842)
+..|.|-+||+....... ....|.+ | ...|.|+.|++- -.+|.|||+||+||+||+...
T Consensus 107 s~nG~i~vWdlnk~~rnk--------------~l~~f~E--H-~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--- 166 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNK--------------LLTVFNE--H-ERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK--- 166 (839)
T ss_pred cCCCcEEEEecCccccch--------------hhhHhhh--h-ccceeeeeeccCCccEEEecCCCceEEEEeeecc---
Confidence 668999999996531110 0012444 3 678999999873 489999999999999999875
Q ss_pred CCCCcceeEEecccCCcEEEEEEecC-C-CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceecc
Q 003171 227 SDDGFGEVLSWQAHRGPVLSLCISSY-G-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (842)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~d-G-~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~ 304 (842)
....++.+...+|..|.|+|. + .++++.+.|.+++||+..-... ...+.+|
T Consensus 167 -----~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------------------~~k~~AH---- 219 (839)
T KOG0269|consen 167 -----KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------------------EKKLTAH---- 219 (839)
T ss_pred -----cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH------------------HHHhhcc----
Confidence 456677888899999999984 3 3889999999999999542111 0112223
Q ss_pred ceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCC
Q 003171 305 GFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (842)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~ 383 (842)
.+.|.++--.|++..|++|+ |++|+|||..+++.-.....+
T Consensus 220 ------~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-------------------------------- 261 (839)
T KOG0269|consen 220 ------NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-------------------------------- 261 (839)
T ss_pred ------cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe--------------------------------
Confidence 55677888888888888887 789999999765431110000
Q ss_pred ccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC--cEEEEe--CCCeEEEEcCCC--Ceeeeeec
Q 003171 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG--MIWTGG--ANGLLLQWDPNG--NRLQDFQY 457 (842)
Q Consensus 384 ~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg--~l~Sgs--~DgtIrlWD~~g--~~l~~l~~ 457 (842)
....|..|.+-|+. .|++++ .|-.|++||+.. -.-.+|..
T Consensus 262 ----------------------------------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e 307 (839)
T KOG0269|consen 262 ----------------------------------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE 307 (839)
T ss_pred ----------------------------------ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec
Confidence 00011122232332 266655 377899999964 45678899
Q ss_pred CCccEEEEEecC---CEEEEEecCcEEEE
Q 003171 458 LPFAVQCLCTFG---SQIWVGYMNGIVQV 483 (842)
Q Consensus 458 H~~~V~sls~dG---~~LasGs~DgtIrl 483 (842)
|+..|+.++.++ ..+|+++.|++|..
T Consensus 308 H~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 308 HTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred cCccccceeccCCCceeeEeecCccHHHH
Confidence 999999998754 48999999998753
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.42 E-value=1e-10 Score=128.79 Aligned_cols=235 Identities=23% Similarity=0.361 Sum_probs=170.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC-cEEEEEE-ecCCC-E-EE-eeCCCcEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-PVLSLCI-SSYGD-L-WS-GSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~-~V~slaf-s~dG~-L-~S-gS~DgtIr 265 (842)
...+.++.+++.+..+..++.|+.+.+|+...+. .....+.++.. .+..+.+ ++++. + .. +..|++++
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 6789999999999999999999999999998851 25666777544 7888888 77776 4 34 34499999
Q ss_pred EEeCCC-ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCC
Q 003171 266 IWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTR 342 (842)
Q Consensus 266 vWd~~t-~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg 342 (842)
+|+... ......+. .| ...+..+.+.+.+..+.+++ +..+++|++.++
T Consensus 138 ~~~~~~~~~~~~~~~-------------------~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (466)
T COG2319 138 LWDLSTPGKLIRTLE-------------------GH----------SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188 (466)
T ss_pred EEEecCCCeEEEEEe-------------------cC----------cccEEEEEECCCCCEEEecCCCCCceEEEEcCCC
Confidence 999865 21111111 11 33455677777666555554 678999999875
Q ss_pred cEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCce
Q 003171 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (842)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (842)
..+..+.. |...+
T Consensus 189 ~~~~~~~~-------------------------------------------------------------------~~~~v 201 (466)
T COG2319 189 KPLSTLAG-------------------------------------------------------------------HTDPV 201 (466)
T ss_pred ceEEeecc-------------------------------------------------------------------CCCce
Confidence 55444322 22334
Q ss_pred EEEEECCCCc-EE-EEeCCCeEEEEcC-CCCeee-eeecCCcc-EEEEEecCCEEEEEecCcEEEEEeCCC-c-cccccc
Q 003171 423 EALTTSIDGM-IW-TGGANGLLLQWDP-NGNRLQ-DFQYLPFA-VQCLCTFGSQIWVGYMNGIVQVLDLEG-N-LLGGWV 495 (842)
Q Consensus 423 ~al~~s~dg~-l~-Sgs~DgtIrlWD~-~g~~l~-~l~~H~~~-V~sls~dG~~LasGs~DgtIrlWD~~g-~-~i~~l~ 495 (842)
..++++|++. ++ +++.|++|++||. .+.++. .+.+|... +.++.+++.++++++.|+.+++||... . .+..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 281 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe
Confidence 4566667775 44 4488999999998 588888 68888887 555677888888999999999999873 2 244447
Q ss_pred ccccCEEEEEe--CCCEEEEEcCCCCeeeccccCC
Q 003171 496 AHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 496 gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
+|...|.++.+ ++..+++++.|+.+++|+....
T Consensus 282 ~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 89999999875 4578888999999999987654
No 161
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.42 E-value=7.4e-13 Score=150.96 Aligned_cols=267 Identities=18% Similarity=0.190 Sum_probs=167.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|+|++||..|.+|.+|+.|..+|||.++++ .+..+..||.+.|+.++.+.+.. ++++|.|..||||-+
T Consensus 190 ~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 190 RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred hhheeeeeeccccceEeecCccceeeeeeccch--------hhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 789999999999999999999999999999997 67888999999999999998776 689999999999998
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEee
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~ 349 (842)
.++...- .+++| ++.|+.+++++-. .++.++|+++||.+ -+.+. +.
T Consensus 262 ~~~~pvs-------------------vLrgh----------tgavtaiafsP~~---sss~dgt~~~wd~r-~~~~~-y~ 307 (1113)
T KOG0644|consen 262 PDGAPVS-------------------VLRGH----------TGAVTAIAFSPRA---SSSDDGTCRIWDAR-LEPRI-YV 307 (1113)
T ss_pred CCCchHH-------------------HHhcc----------ccceeeeccCccc---cCCCCCceEecccc-ccccc-cC
Confidence 7643211 13334 5567778887633 34446899999987 11111 11
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
+.+. .+.. .. ...++-|..+.....+|+.++..+.+.--.+..+...+.-+..+.
T Consensus 308 prp~-----~~~~--~~------------------~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ss 362 (1113)
T KOG0644|consen 308 PRPL-----KFTE--KD------------------LVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSS 362 (1113)
T ss_pred CCCC-----Cccc--cc------------------ceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccc
Confidence 1000 0000 00 000001111111112222222111111000111111111122222
Q ss_pred C--CcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe---cCCEEEEEecCcEEEEEeCC-Ccccc-cccccccCE
Q 003171 430 D--GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLG-GWVAHSSPV 501 (842)
Q Consensus 430 d--g~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~-~l~gH~~~V 501 (842)
| ...+++-.+.-+++|++ +|..++.+.+|...+..+.+ +.+...+++.||.+-|||.. |-.++ -+.+|...|
T Consensus 363 d~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~ 442 (1113)
T KOG0644|consen 363 DLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLV 442 (1113)
T ss_pred cccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceee
Confidence 2 12455556777999999 89999999999998887754 34455688899999999985 75544 346787777
Q ss_pred EEE-EeCCCEEEEEcCCCCeeecc
Q 003171 502 IKM-AVGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 502 ~sl-a~dg~~l~S~S~DgtIrvWd 524 (842)
.+- ..||+.++-....|.+.+..
T Consensus 443 d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 443 DGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred ccccCCCCceEecCCCCCceEEec
Confidence 663 35777766555566666655
No 162
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=7.6e-12 Score=138.69 Aligned_cols=257 Identities=14% Similarity=0.128 Sum_probs=154.9
Q ss_pred eeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeec
Q 003171 233 EVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILT 311 (842)
Q Consensus 233 ~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s 311 (842)
+...++||++.|.+|..+|.|. |+|||.|||||||.+.|+.+..+... .
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~------------------------------d 441 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF------------------------------D 441 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee------------------------------c
Confidence 3455799999999999999998 89999999999999988765432221 2
Q ss_pred CCEEEEEEcCCCC--EEEEeCCCcEEEEEccCCcEEEE------eecCCceEeeeecccCCCccc--------ccceEEE
Q 003171 312 SDIKNLLSDHSRA--KVWSAGFLSFALWDARTRELLKV------FNIDGQIENRVDMSLLPDFAM--------EDEFKTK 375 (842)
Q Consensus 312 ~~v~~las~~~~~--~v~s~s~~tI~lWD~~tg~~l~~------l~~~~~~~~~~~~s~~~~~~~--------~~~~~~~ 375 (842)
+.|++++..+... .|+.+....+.|-+..=|..+.. |..-... .....+...+ +..+++.
T Consensus 442 ~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~----~~p~~~~~~W~~~~~~e~~~~v~~~ 517 (733)
T KOG0650|consen 442 SEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNE----SEPDAAVVTWSRASLDELEKGVCIV 517 (733)
T ss_pred ceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCc----cCCcccceeechhhhhhhccceEEE
Confidence 2355555554332 23333222333433333321111 0000000 0000000011 0001111
Q ss_pred EEecCCCCccceeeeEeecCcceEEecCC-cE--EEEee--c----CccccCCCceEEEEECCCCc-EEEEeCCCeEEEE
Q 003171 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AV--RRVAA--K----GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQW 445 (842)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v--~~v~~--~----g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlW 445 (842)
+ +..+.+..+....++....+-..+ +. ..+.. + -.|....+.|.++.|.|-.- ++.++ ...||++
T Consensus 518 I----~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiY 592 (733)
T KOG0650|consen 518 I----KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIY 592 (733)
T ss_pred E----ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEE
Confidence 1 112233334444444433322221 11 11111 1 12333445677788887654 66665 5569999
Q ss_pred cC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC--CcccccccccccCEEEEEeCCCE--EEEEcCCC
Q 003171 446 DP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAVGAGY--IFTLANHG 518 (842)
Q Consensus 446 D~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~dg~~--l~S~S~Dg 518 (842)
|+ .++.++.+.....+|.+++. .|..|+.|+.|+.+..+|+. .+..+++.-|...|.+|++++++ ++|||.|+
T Consensus 593 dL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDg 672 (733)
T KOG0650|consen 593 DLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDG 672 (733)
T ss_pred ehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCC
Confidence 99 77778887777778887764 68999999999999999986 67999999999999999998885 77999999
Q ss_pred CeeeccccCC
Q 003171 519 GIRGWNVTSP 528 (842)
Q Consensus 519 tIrvWd~~~~ 528 (842)
++.|+--..|
T Consensus 673 tv~Vfhg~VY 682 (733)
T KOG0650|consen 673 TVIVFHGMVY 682 (733)
T ss_pred cEEEEeeeee
Confidence 9999875444
No 163
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.41 E-value=2.9e-10 Score=124.15 Aligned_cols=267 Identities=16% Similarity=0.192 Sum_probs=164.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc-CCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
...|....|.|.+..|..-.-.|.+-.|+..++. -++..-.+++| +.-|.||+|.++|+.+||-.+|+|-||+.
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~-----l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGS-----LVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSK 274 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCCceEEEEEccCCc-----eEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeC
Confidence 3467888999976555555556889999998862 22333445555 46899999999999999999999999998
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.+..-.... +++ ...|-+|..-.+| ++.|++ |+.|.+||-.-.+ ++..
T Consensus 275 ~~~~~~k~~---------------------~aH--------~ggv~~L~~lr~G-tllSGgKDRki~~Wd~~y~k-~r~~ 323 (626)
T KOG2106|consen 275 GTNRISKQV---------------------HAH--------DGGVFSLCMLRDG-TLLSGGKDRKIILWDDNYRK-LRET 323 (626)
T ss_pred CCceEEeEe---------------------eec--------CCceEEEEEecCc-cEeecCccceEEeccccccc-cccc
Confidence 552211110 111 3345556655444 455555 6789999922111 1111
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCc-EEEEeecC----ccccCCCceE
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAKG----GFGDDNRRTE 423 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~-v~~v~~~g----~~~~~~~~v~ 423 (842)
+...+. . . ++.+...+ ...++|+... +..-.... ...+|.....
T Consensus 324 elPe~~-----------G----~--iRtv~e~~--------------~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw 372 (626)
T KOG2106|consen 324 ELPEQF-----------G----P--IRTVAEGK--------------GDILVGTTRNFILQGTLENGFTLTVQGHGDELW 372 (626)
T ss_pred cCchhc-----------C----C--eeEEecCC--------------CcEEEeeccceEEEeeecCCceEEEEeccccee
Confidence 111100 0 0 01111111 1123333221 11111111 1234666677
Q ss_pred EEEECCCC-cEEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCcccccccccccC
Q 003171 424 ALTTSIDG-MIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSP 500 (842)
Q Consensus 424 al~~s~dg-~l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~ 500 (842)
.++..|+. ++++++.|++++||+ .-+.+=+.. -.+++.|+.+ .| .||.|+..|..-|.|.+.+.+.+..--+.+
T Consensus 373 gla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ 449 (626)
T KOG2106|consen 373 GLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQ 449 (626)
T ss_pred eEEcCCChhheeeccCcceEEEcc-CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCc
Confidence 78877764 589999999999999 322221111 1356677755 57 999999999999999986543333333778
Q ss_pred EEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 501 VIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 501 V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
++.++ ++|.+++-||.|+.|.++.+..
T Consensus 450 ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 450 LSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred eEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 88876 6999999999999999998754
No 164
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.40 E-value=6.9e-10 Score=122.11 Aligned_cols=273 Identities=22% Similarity=0.366 Sum_probs=178.0
Q ss_pred eeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEE-cCCCC-EEEE
Q 003171 134 FLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVG-DEASG-VVWS 208 (842)
Q Consensus 134 ~~~~l~~~~~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~-dpdg~-~LaS 208 (842)
.+..+..... .+.. +.|+.+.+|+......... .+.. .+ ...+..+.+ ++++. .+..
T Consensus 67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----------------~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 128 (466)
T COG2319 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK----------------SLEG-LH-DSSVSKLALSSPDGNSILLA 128 (466)
T ss_pred eEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE----------------EEec-cC-CCceeeEEEECCCcceEEec
Confidence 4555555433 3333 4599999999865431100 0000 00 114555555 77777 5555
Q ss_pred EeC-CCcEEEEECCC-CccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeC-CCcEEEEeCCCccceeecCCCcee
Q 003171 209 GHR-DGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE-GGGIKIWPWEAIEKALSLKPEERH 284 (842)
Q Consensus 209 Gs~-DGtIrlWdl~~-g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~-DgtIrvWd~~t~~~~l~~~~~~~~ 284 (842)
.+. |+.+++|+... . .....+.+|...|.+++|+|++. +++++. |+++++|+.........+.
T Consensus 129 ~~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 195 (466)
T COG2319 129 SSSLDGTVKLWDLSTPG--------KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA----- 195 (466)
T ss_pred cCCCCccEEEEEecCCC--------eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-----
Confidence 444 99999999987 3 56777899999999999999997 677775 9999999996522111111
Q ss_pred eeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEE-eCCCcEEEEEccCCcEEE-EeecCCceEeeeecc
Q 003171 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWS-AGFLSFALWDARTRELLK-VFNIDGQIENRVDMS 361 (842)
Q Consensus 285 ~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s-~s~~tI~lWD~~tg~~l~-~l~~~~~~~~~~~~s 361 (842)
+ +...+..+...+.+. .+.+ +.+++|++||..++.++. .+..+.
T Consensus 196 --------------~----------~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~--------- 242 (466)
T COG2319 196 --------------G----------HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS--------- 242 (466)
T ss_pred --------------c----------CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCC---------
Confidence 0 133455666665554 4444 346789999887666544 222111
Q ss_pred cCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC-cEEEEeCCC
Q 003171 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANG 440 (842)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~l~Sgs~Dg 440 (842)
..+ ...+++++ .+++++.|+
T Consensus 243 ----------------------------------------------------------~~~-~~~~~~~~~~~~~~~~d~ 263 (466)
T COG2319 243 ----------------------------------------------------------DSV-VSSFSPDGSLLASGSSDG 263 (466)
T ss_pred ----------------------------------------------------------cce-eEeECCCCCEEEEecCCC
Confidence 110 01456666 467899999
Q ss_pred eEEEEcCC-CCe-eeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCC-cccccc--cccccCEEEEEeC--CCEE
Q 003171 441 LLLQWDPN-GNR-LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-NLLGGW--VAHSSPVIKMAVG--AGYI 511 (842)
Q Consensus 441 tIrlWD~~-g~~-l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g-~~i~~l--~gH~~~V~sla~d--g~~l 511 (842)
.+++||.. ... +..+.+|...|.++.. ++..+++++.|+.+++||... ...... .+|...|..+.+. +..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (466)
T COG2319 264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL 343 (466)
T ss_pred cEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEE
Confidence 99999994 433 5555788899998865 467888888899999999873 344444 3888888888762 2455
Q ss_pred EEE-cCCCCeeeccccCCC
Q 003171 512 FTL-ANHGGIRGWNVTSPG 529 (842)
Q Consensus 512 ~S~-S~DgtIrvWd~~~~~ 529 (842)
+.+ ..|+.+++|++....
T Consensus 344 ~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 344 VSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEeecCCCcEEeeecCCCc
Confidence 555 788999999976543
No 165
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.39 E-value=2.9e-11 Score=130.75 Aligned_cols=272 Identities=15% Similarity=0.140 Sum_probs=165.0
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC--CEEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEAS--GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg--~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrv 266 (842)
...|+|++|.|.- ++|++|..-|.|-+||+.+.. ........+..|.++|.+|.|+|.. ++++.|.|||||+
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~----~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE----KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCC----CccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 6789999999954 699999999999999996421 1223456688999999999999976 4899999999999
Q ss_pred EeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE-
Q 003171 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL- 344 (842)
Q Consensus 267 Wd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~- 344 (842)
=|+++......+...... .. ...+-+......|..+. .+.+.+||++++.-
T Consensus 262 ~D~~~~i~e~v~s~~~d~-------------------~~--------fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDN-------------------IW--------FSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred eeecchhhHHHhhcCccc-------------------ee--------eeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence 999763221111110000 00 00111222333333333 46788999988643
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee------cCc----
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------KGG---- 414 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------~g~---- 414 (842)
...+..|..-++.+++.+.... ..+++..+...++|. +..
T Consensus 315 ~~~~~lh~kKI~sv~~NP~~p~------------------------------~laT~s~D~T~kIWD~R~l~~K~sp~ls 364 (498)
T KOG4328|consen 315 YENLRLHKKKITSVALNPVCPW------------------------------FLATASLDQTAKIWDLRQLRGKASPFLS 364 (498)
T ss_pred chhhhhhhcccceeecCCCCch------------------------------heeecccCcceeeeehhhhcCCCCccee
Confidence 2222333333334444443221 112233333333332 111
Q ss_pred cccCCCceEEEEECCCC-cEEEEeCCCeEEEEcCC----C-CeeeeeecCCc----cEEEE----EecCCEEEEEecCcE
Q 003171 415 FGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPN----G-NRLQDFQYLPF----AVQCL----CTFGSQIWVGYMNGI 480 (842)
Q Consensus 415 ~~~~~~~v~al~~s~dg-~l~Sgs~DgtIrlWD~~----g-~~l~~l~~H~~----~V~sl----s~dG~~LasGs~Dgt 480 (842)
...|...|.+..|||.| .|++.+.|..|||||.. . +.+.++ .|.+ +++-+ .++-.+|++|-.-..
T Consensus 365 t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~ 443 (498)
T KOG4328|consen 365 TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP 443 (498)
T ss_pred cccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-eccCcccccccchhheeCCCccEEEEeccCcc
Confidence 23577889999999965 59999999999999983 2 223333 3443 33322 246679999999889
Q ss_pred EEEEeCCC-ccccccccccc-CEEEEE-eC--CCEEEEEc-CCCCeeecc
Q 003171 481 VQVLDLEG-NLLGGWVAHSS-PVIKMA-VG--AGYIFTLA-NHGGIRGWN 524 (842)
Q Consensus 481 IrlWD~~g-~~i~~l~gH~~-~V~sla-~d--g~~l~S~S-~DgtIrvWd 524 (842)
|-|+|.+| +.+..+..... .|.++- ++ +..+++|| ..|.|.||.
T Consensus 444 IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 444 IDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred eeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 99999985 44665554443 566653 33 33355555 344555553
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.39 E-value=3.8e-11 Score=124.85 Aligned_cols=221 Identities=16% Similarity=0.176 Sum_probs=143.6
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc--cCC---cEEEEEEecCCCEEEeeCCCcEEEEeCCC-cc
Q 003171 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA--HRG---PVLSLCISSYGDLWSGSEGGGIKIWPWEA-IE 273 (842)
Q Consensus 200 dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g--H~~---~V~slafs~dG~L~SgS~DgtIrvWd~~t-~~ 273 (842)
.|+..+.++.+.|.-|++||.-+| +...++.+ |.. +-.||+|+|||.-+-++...+||++|+.. +.
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG--------~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTG--------KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGR 191 (406)
T ss_pred CCccceeeeccccCceeeeecccc--------ccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCC
Confidence 477889999999999999999998 44444443 433 34689999999855566788999999843 22
Q ss_pred ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeCC-CcEEEEEccCCcEEEEeecC
Q 003171 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAGF-LSFALWDARTRELLKVFNID 351 (842)
Q Consensus 274 ~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s~-~tI~lWD~~tg~~l~~l~~~ 351 (842)
..- ...++ .++. ....+-+.++++++-.. .++.+++ +++-|+.-..+.++.++
T Consensus 192 ~c~-------vy~t~--------~~~k-------~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll--- 246 (406)
T KOG2919|consen 192 DCP-------VYTTV--------TKGK-------FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL--- 246 (406)
T ss_pred CCc-------chhhh--------hccc-------ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee---
Confidence 110 00000 0000 00022245666666443 3444443 22223322222222221
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg 431 (842)
-+|.+.|+.|.+-+||
T Consensus 247 ----------------------------------------------------------------ggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 247 ----------------------------------------------------------------GGHGGGVTHLQWCEDG 262 (406)
T ss_pred ----------------------------------------------------------------cccCCCeeeEEeccCc
Confidence 1344556677788888
Q ss_pred c-EEEEeC-CCeEEEEcCC--CCeeeeeecCCc----cEE-EEEecCCEEEEEecCcEEEEEeCC--CcccccccccccC
Q 003171 432 M-IWTGGA-NGLLLQWDPN--GNRLQDFQYLPF----AVQ-CLCTFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSP 500 (842)
Q Consensus 432 ~-l~Sgs~-DgtIrlWD~~--g~~l~~l~~H~~----~V~-sls~dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~ 500 (842)
. |.+|+. |-.|-.||+. +..+-.+..|.. +|. .+.+.|+.|++|+.||.|++||++ |+...++..|++.
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~ 342 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDT 342 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccc
Confidence 7 888884 5679999993 567777777765 333 356679999999999999999997 6888999999999
Q ss_pred EEEEEeCCC--EEEEEcCC
Q 003171 501 VIKMAVGAG--YIFTLANH 517 (842)
Q Consensus 501 V~sla~dg~--~l~S~S~D 517 (842)
|+.++..+- .++++|..
T Consensus 343 vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 343 VNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccceecCcccceeeeccCc
Confidence 999997665 45555544
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.37 E-value=1.4e-11 Score=133.72 Aligned_cols=241 Identities=15% Similarity=0.197 Sum_probs=162.4
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~ 227 (842)
+.|.-+++|.-... .+..|..+.+. ...-.|+++.....++.+|+..++|+|||+...
T Consensus 54 ~gdk~~~~~~K~g~-----------------~~~Vp~~~k~~-gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k---- 111 (673)
T KOG4378|consen 54 AGDKVMRIKEKDGK-----------------TPEVPRVRKLT-GDNAFCVACASQSLYEISGGQSGCVKIWDLRAK---- 111 (673)
T ss_pred CCceeEEEecccCC-----------------CCccceeeccc-cchHHHHhhhhcceeeeccCcCceeeehhhHHH----
Confidence 56889999974321 11223333333 335667776666799999999999999999863
Q ss_pred CCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccce
Q 003171 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (842)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~ 306 (842)
...+.+++|+..|++|.+.-... |+++|..|-|-|-.+.++.+.-.+.....+
T Consensus 112 ----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq---------------------- 165 (673)
T KOG4378|consen 112 ----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ---------------------- 165 (673)
T ss_pred ----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCC----------------------
Confidence 33456899999999999987654 999999999999999876544333211111
Q ss_pred eeeecCCEEEEEEcCCCC-EEEEeCC-CcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCc
Q 003171 307 SSILTSDIKNLLSDHSRA-KVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDK 384 (842)
Q Consensus 307 ~~~~s~~v~~las~~~~~-~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~ 384 (842)
.++.|-+++... .+.+++| ++|.|||+.....+..+.
T Consensus 166 ------svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~----------------------------------- 204 (673)
T KOG4378|consen 166 ------SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS----------------------------------- 204 (673)
T ss_pred ------eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh-----------------------------------
Confidence 133444544433 3445555 578999986543321110
Q ss_pred cceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEeCCCeEEEEcCC-CCeeeeeecCCcc
Q 003171 385 AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPN-GNRLQDFQYLPFA 461 (842)
Q Consensus 385 ~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~~ 461 (842)
..|......+.|+|-.. +++.+.|+.|.+||.. .+....+.. ..+
T Consensus 205 -------------------------------~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~P 252 (673)
T KOG4378|consen 205 -------------------------------EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHP 252 (673)
T ss_pred -------------------------------hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cCC
Confidence 01112222355666543 6899999999999994 444444443 344
Q ss_pred EEEEE--ecCCEEEEEecCcEEEEEeCCC--cccccccccccCEEEEEeCCC
Q 003171 462 VQCLC--TFGSQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVIKMAVGAG 509 (842)
Q Consensus 462 V~sls--~dG~~LasGs~DgtIrlWD~~g--~~i~~l~gH~~~V~sla~dg~ 509 (842)
..+++ .+|.+|++|+..|.|.-||+.+ .++.++.+|...|++|++...
T Consensus 253 lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 253 LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred cceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 55554 5799999999999999999985 379999999999999997543
No 168
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=3.1e-11 Score=130.62 Aligned_cols=239 Identities=17% Similarity=0.247 Sum_probs=167.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (842)
.++|.||.|.|...+|.+|+.||++|++-+++.. +. .++++.=-.-||.+.+|.|+|+ +++++.-..+..||
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~----N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV----NP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCcc----Ch--hheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence 5689999999999999999999999999998742 22 2233222367999999999997 78999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
+.+.+.. .+.+. .++ ....+.....++++..|+..+ .+-|.|.-+.|++++.+
T Consensus 287 le~ak~~-k~~~~----------------~g~---------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s 340 (514)
T KOG2055|consen 287 LETAKVT-KLKPP----------------YGV---------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS 340 (514)
T ss_pred ccccccc-cccCC----------------CCc---------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe
Confidence 9774321 11110 011 011233445556666666555 35677777777777666
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
+...+ .|..+.|
T Consensus 341 ~KieG--------------------------------------------------------------------~v~~~~f 352 (514)
T KOG2055|consen 341 FKIEG--------------------------------------------------------------------VVSDFTF 352 (514)
T ss_pred eeecc--------------------------------------------------------------------EEeeEEE
Confidence 54322 2334567
Q ss_pred CCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccE----EEEEecCCEEEEEecCcEEEEEeCC-----C--cccccc
Q 003171 428 SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAV----QCLCTFGSQIWVGYMNGIVQVLDLE-----G--NLLGGW 494 (842)
Q Consensus 428 s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V----~sls~dG~~LasGs~DgtIrlWD~~-----g--~~i~~l 494 (842)
+.||+ ||+.+.+|.|.+||+ ...|++++.. .+.| .|++.+|+++|+||..|.|.|||.+ + +++.++
T Consensus 353 sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~ 431 (514)
T KOG2055|consen 353 SSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV 431 (514)
T ss_pred ecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh
Confidence 77777 788888999999999 5689988874 2223 2556789999999999999999953 2 467777
Q ss_pred cccccCEEEEEe--CCCEEEE--EcCCCCeeeccccCCCC
Q 003171 495 VAHSSPVIKMAV--GAGYIFT--LANHGGIRGWNVTSPGP 530 (842)
Q Consensus 495 ~gH~~~V~sla~--dg~~l~S--~S~DgtIrvWd~~~~~~ 530 (842)
.--+..|++|.+ |.+.|+- -..+..+|+=.+.+...
T Consensus 432 dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV 471 (514)
T KOG2055|consen 432 DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV 471 (514)
T ss_pred hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee
Confidence 666778888885 6676664 44677888876655433
No 169
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.36 E-value=1.8e-11 Score=129.48 Aligned_cols=238 Identities=19% Similarity=0.289 Sum_probs=153.0
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcc--------CCCCCcceeEEecccCCcEEEEEEec--CCCEEEe
Q 003171 191 VSSVMCMVGDEAS--GVVWSGHRDGRIMCWKMNARLL--------DSDDGFGEVLSWQAHRGPVLSLCISS--YGDLWSG 258 (842)
Q Consensus 191 ~~~V~~la~dpdg--~~LaSGs~DGtIrlWdl~~g~~--------~~~~~~~~~~~l~gH~~~V~slafs~--dG~L~Sg 258 (842)
.+.+..+..++-+ -+.+|=|..|.|.||++....- -....++++.++.+|.+.=++|.||| .|.|+||
T Consensus 151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG 230 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG 230 (440)
T ss_pred ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence 3445555555543 5666777889999999864310 01245677889999999999999999 5779999
Q ss_pred eCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEE
Q 003171 259 SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFAL 336 (842)
Q Consensus 259 S~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~l 336 (842)
---+.|++|...++. ...... . +.+| +..|.-|.-++ ....++|++ |++|+|
T Consensus 231 Dc~~~I~lw~~~~g~--W~vd~~--P------------f~gH----------~~SVEDLqWSptE~~vfaScS~DgsIrI 284 (440)
T KOG0302|consen 231 DCVKGIHLWEPSTGS--WKVDQR--P------------FTGH----------TKSVEDLQWSPTEDGVFASCSCDGSIRI 284 (440)
T ss_pred ccccceEeeeeccCc--eeecCc--c------------cccc----------ccchhhhccCCccCceEEeeecCceEEE
Confidence 888999999986632 111100 0 0011 11222333333 234556666 789999
Q ss_pred EEccCCcE---EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecC
Q 003171 337 WDARTREL---LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG 413 (842)
Q Consensus 337 WD~~tg~~---l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g 413 (842)
||++.+.. +.+ .
T Consensus 285 WDiRs~~~~~~~~~-k---------------------------------------------------------------- 299 (440)
T KOG0302|consen 285 WDIRSGPKKAAVST-K---------------------------------------------------------------- 299 (440)
T ss_pred EEecCCCccceeEe-e----------------------------------------------------------------
Confidence 99987632 111 1
Q ss_pred ccccCCCceEEEEECCCC-cEEEEeCCCeEEEEcCC----CCeeeeeecCCccEEEEEec---CCEEEEEecCcEEEEEe
Q 003171 414 GFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPN----GNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 414 ~~~~~~~~v~al~~s~dg-~l~Sgs~DgtIrlWD~~----g~~l~~l~~H~~~V~sls~d---G~~LasGs~DgtIrlWD 485 (842)
.|..-|..+.++.+- .|++|+.||+++|||+. ++.+.+|+.|..+|+||... ...|++++.|..|.|||
T Consensus 300 ---Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 300 ---AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred ---ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 112223334443332 48999999999999993 57889999999999999753 56888999999999999
Q ss_pred CCC--c-------cc--------cccccccc--CEEEEEeC---CCEEEEEcCCCCeeec
Q 003171 486 LEG--N-------LL--------GGWVAHSS--PVIKMAVG---AGYIFTLANHGGIRGW 523 (842)
Q Consensus 486 ~~g--~-------~i--------~~l~gH~~--~V~sla~d---g~~l~S~S~DgtIrvW 523 (842)
+.- . -. +-+--|.+ .|..|.++ +.+++|.+.|| +.||
T Consensus 377 lsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 377 LSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred eeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 631 0 01 12223432 35555553 56788888887 3444
No 170
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.34 E-value=6.6e-10 Score=123.09 Aligned_cols=266 Identities=13% Similarity=0.188 Sum_probs=151.6
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Ccc
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH-RDGRIMCWKMNA-RLL 225 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs-~DGtIrlWdl~~-g~~ 225 (842)
+.+++|++||+.+...... ...+...+....++++|++++|+.++ .++.|.+|+++. +.
T Consensus 9 ~~~~~I~~~~~~~~g~l~~------------------~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~- 69 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTL------------------LQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA- 69 (330)
T ss_pred CCCCCEEEEEECCCCceee------------------eeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-
Confidence 4589999999953211110 01111123566789999999987765 578899999863 21
Q ss_pred CCCCCcceeEEecccCCcEEEEEEecCCC-EEEee-CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceec
Q 003171 226 DSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (842)
Q Consensus 226 ~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~ 303 (842)
+...... .+.+....|+|+|+|+ |++++ .++.|.+|++++....... ... +.+
T Consensus 70 -----l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~------~~~---------~~~---- 124 (330)
T PRK11028 70 -----LTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP------IQI---------IEG---- 124 (330)
T ss_pred -----eEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc------eee---------ccC----
Confidence 1111111 1233567899999998 66555 4899999998632111000 000 000
Q ss_pred cceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCC
Q 003171 304 NGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSK 381 (842)
Q Consensus 304 ~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~ 381 (842)
......++.++++..++.+. ++.|.+||+.+...+.. ..... ...
T Consensus 125 -------~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~---~~~~~---------------------~~~-- 171 (330)
T PRK11028 125 -------LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA---QEPAE---------------------VTT-- 171 (330)
T ss_pred -------CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc---cCCCc---------------------eec--
Confidence 01123345566777766554 36899999876322110 00000 000
Q ss_pred CCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeC-CCeEEEEcCC---C--Ceeee
Q 003171 382 KDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLLLQWDPN---G--NRLQD 454 (842)
Q Consensus 382 ~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~-DgtIrlWD~~---g--~~l~~ 454 (842)
........++++|||+ ++++.. +++|.+||++ + +.+++
T Consensus 172 -----------------------------------~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 172 -----------------------------------VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred -----------------------------------CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence 0001123577889988 566665 8899999984 2 23444
Q ss_pred eecCC------ccEE--EEEecCCEEEEEec-CcEEEEEeCC--Cccccccccccc---CEE--EEEeCCCEEEEEc-CC
Q 003171 455 FQYLP------FAVQ--CLCTFGSQIWVGYM-NGIVQVLDLE--GNLLGGWVAHSS---PVI--KMAVGAGYIFTLA-NH 517 (842)
Q Consensus 455 l~~H~------~~V~--sls~dG~~LasGs~-DgtIrlWD~~--g~~i~~l~gH~~---~V~--sla~dg~~l~S~S-~D 517 (842)
+..+. .... .+.++|++|+++.. +++|.+|+++ +. ..++.+|.. ... .+.+||++|+.+. .+
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~-~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~ 295 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS-VLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS 295 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC-eEEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence 43221 1222 34579999999864 7899999974 22 112223321 122 3447899988666 48
Q ss_pred CCeeecccc
Q 003171 518 GGIRGWNVT 526 (842)
Q Consensus 518 gtIrvWd~~ 526 (842)
++|.+|++.
T Consensus 296 ~~v~v~~~~ 304 (330)
T PRK11028 296 HHISVYEID 304 (330)
T ss_pred CcEEEEEEc
Confidence 999999875
No 171
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=2e-10 Score=124.45 Aligned_cols=271 Identities=14% Similarity=0.217 Sum_probs=185.5
Q ss_pred eeEEEEecCC-EE--EEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeee--eecCCCeEEEEEcCCCC-EEE
Q 003171 134 FLRTIVCTEE-QL--WAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKES--VKGVSSVMCMVGDEASG-VVW 207 (842)
Q Consensus 134 ~~~~l~~~~~-~l--~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~V~~la~dpdg~-~La 207 (842)
.|+++.++.. +| .+|.|+++|+|-++--. .|+..+ +. ..||.|+.|.|+|. .|+
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~-------------------N~~lqS~~l~-~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV-------------------NPKLQSIHLE-KFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCcc-------------------Chhheeeeec-cCccceeeecCCCceEEE
Confidence 4667777744 33 34889999999885311 112222 33 77999999999998 999
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEecccC-CcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 208 SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
+++.-.....||+.++. +..+..+.||. ..+.....|+++. |+..+..|.|.|--..|++...++..
T Consensus 275 ~s~rrky~ysyDle~ak------~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki----- 343 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAK------VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI----- 343 (514)
T ss_pred ecccceEEEEeeccccc------cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-----
Confidence 99999999999999863 12333345664 5677888999998 68899999998877655432221111
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe-CCCcEEEEEccCCcEEEEeecCCceEeeeecccCC
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (842)
.+.+..+++++++.+||++ +++.|.+||+.+..|+..|..++.+
T Consensus 344 -------------------------eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v---------- 388 (514)
T KOG2055|consen 344 -------------------------EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV---------- 388 (514)
T ss_pred -------------------------ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc----------
Confidence 2234445555566666654 5788999999998887776533321
Q ss_pred CcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEE
Q 003171 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (842)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIr 443 (842)
.-++++.|++|. +++||..|.|-
T Consensus 389 --------------------------------------------------------~gts~~~S~ng~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 389 --------------------------------------------------------HGTSLCISLNGSYLATGSDSGIVN 412 (514)
T ss_pred --------------------------------------------------------ceeeeeecCCCceEEeccCcceEE
Confidence 012456677776 78999999999
Q ss_pred EEcCCC-------CeeeeeecCCccEEEEEe--cCCEEEEEec--CcEEEEEeCCC-ccccccccc---ccCEEEEEe--
Q 003171 444 QWDPNG-------NRLQDFQYLPFAVQCLCT--FGSQIWVGYM--NGIVQVLDLEG-NLLGGWVAH---SSPVIKMAV-- 506 (842)
Q Consensus 444 lWD~~g-------~~l~~l~~H~~~V~sls~--dG~~LasGs~--DgtIrlWD~~g-~~i~~l~gH---~~~V~sla~-- 506 (842)
|||.+. +.+.++..-+..|+++.+ |++.||.+|. +..+||--+.. .....|... -+-|+||++
T Consensus 413 IYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP 492 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP 492 (514)
T ss_pred EeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC
Confidence 999631 445555444567887765 6788887774 77899888653 223333322 245889885
Q ss_pred CCCEEEEEcCCCCeeecccc
Q 003171 507 GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 507 dg~~l~S~S~DgtIrvWd~~ 526 (842)
.+.+++-|-.+|.|.+|.+.
T Consensus 493 ~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 493 NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCceEEeecCCCceeeEeec
Confidence 56789999999999999864
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.33 E-value=1.2e-11 Score=128.82 Aligned_cols=249 Identities=14% Similarity=0.206 Sum_probs=156.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-C-EEEeeCCCcEEEEeCCCccceeecCC
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvWd~~t~~~~l~~~~ 280 (842)
.-+||.|++-|.|||-|+..+ +....+.||.++|+.|.|.|+. + ++|||.|.+||+|++++..+...+-+
T Consensus 105 ~p~la~~G~~GvIrVid~~~~--------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSG--------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred CeeEEeecceeEEEEEecchh--------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 357888889999999999987 6677899999999999999987 3 67999999999999987554433322
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeee
Q 003171 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (842)
Q Consensus 281 ~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (842)
.+. | -..|.++-++.++.+++|++ |.+|++|++.+.++-..+ +.+..
T Consensus 177 ~eg----------------H----------rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~l------E~s~~ 224 (385)
T KOG1034|consen 177 VEG----------------H----------RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKL------ELSIT 224 (385)
T ss_pred ccc----------------c----------cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhh------hhhcc
Confidence 111 2 34577788888888999888 679999999876542211 11112
Q ss_pred cccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCC
Q 003171 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN 439 (842)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~D 439 (842)
+++..... + -......| +. +. + -.-|...|.++.+= ...++|=|.+
T Consensus 225 ~~~~~t~~--------------p-fpt~~~~f-p~----fs-t------------~diHrnyVDCvrw~-gd~ilSksce 270 (385)
T KOG1034|consen 225 YSPNKTTR--------------P-FPTPKTHF-PD----FS-T------------TDIHRNYVDCVRWF-GDFILSKSCE 270 (385)
T ss_pred cCCCCccC--------------c-CCcccccc-cc----cc-c------------cccccchHHHHHHH-hhheeecccC
Confidence 22111000 0 00000000 00 00 0 00122223222221 1246777778
Q ss_pred CeEEEEcC-C-CC-------------eeeeeecCCccEEEE--Eec--CCEEEEEecCcEEEEEeCCCc-c--ccccccc
Q 003171 440 GLLLQWDP-N-GN-------------RLQDFQYLPFAVQCL--CTF--GSQIWVGYMNGIVQVLDLEGN-L--LGGWVAH 497 (842)
Q Consensus 440 gtIrlWD~-~-g~-------------~l~~l~~H~~~V~sl--s~d--G~~LasGs~DgtIrlWD~~g~-~--i~~l~gH 497 (842)
+.|..|-. + ++ .+.+|......|.-+ ++| ++.||.|...|.|.+||++.. . ..++.-+
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 88999976 3 22 233444444555554 344 689999999999999999732 2 2233222
Q ss_pred c--cCEEE--EEeCCCEEEEEcCCCCeeeccc
Q 003171 498 S--SPVIK--MAVGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 498 ~--~~V~s--la~dg~~l~S~S~DgtIrvWd~ 525 (842)
. ..|.. ++.|+..|+-...|++|..||.
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 1 23433 4469999999999999999984
No 173
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.32 E-value=3.9e-11 Score=121.84 Aligned_cols=268 Identities=15% Similarity=0.148 Sum_probs=162.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-ccCCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
.+.|+|+.|..++ +|.+|..-|.+++|++.+. +....|+ .|+..|+.+--.|++.|.|=+.|.++.+|++
T Consensus 14 ~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~--------r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 14 SSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTE--------RDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI 84 (323)
T ss_pred cchheehhhccch-hhhcccccceEEEEEeecC--------ccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence 6789999998655 5899999999999999985 5566777 5688999999999988999999999999998
Q ss_pred CCcc--------------ceeecCCCceeeeEEEE-eeceeecccceeccc-eeee--e-------cCCEEEEEE--cCC
Q 003171 270 EAIE--------------KALSLKPEERHTAALIV-ERSYIDLRSHLSVNG-FSSI--L-------TSDIKNLLS--DHS 322 (842)
Q Consensus 270 ~t~~--------------~~l~~~~~~~~~~~l~~-~~s~~~l~~~~~~~~-~~~~--~-------s~~v~~las--~~~ 322 (842)
.... +.+++.+.......+.. ..-..+. .|....+ .+.+ + .+.+.+.-- ...
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccch-hhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 6411 11111111111100000 0000000 0100000 0000 0 111222221 111
Q ss_pred CCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEE
Q 003171 323 RAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (842)
Q Consensus 323 ~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~ 400 (842)
...+..++ ++.+.+||+.++..+..|.....++ .
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~----------------------~---------------------- 199 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVE----------------------S---------------------- 199 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccc----------------------c----------------------
Confidence 22333344 3567788887775433332111000 0
Q ss_pred ecCCcEEEEeecCccccCCCceEEEEECCC-CcEEEEeCCCeEEEEcCC---CCee--eeeecCCccEE--EEEecCCEE
Q 003171 401 GAADAVRRVAAKGGFGDDNRRTEALTTSID-GMIWTGGANGLLLQWDPN---GNRL--QDFQYLPFAVQ--CLCTFGSQI 472 (842)
Q Consensus 401 g~~~~v~~v~~~g~~~~~~~~v~al~~s~d-g~l~Sgs~DgtIrlWD~~---g~~l--~~l~~H~~~V~--sls~dG~~L 472 (842)
....|...|.++.+.+- .+=++|+.+..+..|.++ |.+. .+++.-.-.|. .|.+|++.+
T Consensus 200 -------------~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIl 266 (323)
T KOG0322|consen 200 -------------PNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKIL 266 (323)
T ss_pred -------------chhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEE
Confidence 01133444555554432 123567777778889873 4321 22222222344 457899999
Q ss_pred EEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 473 WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 473 asGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
|+++.|+.||||.-+ .+.+..++-|.+.|+++++ |...++.+|.|++|.+|++
T Consensus 267 ATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 267 ATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999965 7899999999999999996 4568999999999999985
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.31 E-value=8.9e-11 Score=124.90 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=97.9
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (842)
+++|+.++|+| +...|||||.|.+|+||.+..+. -..+..+.+..|.||+..|..|+++|... |+|++.|.+|.+|
T Consensus 81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~-l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENG-LTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred cccccccccCccCCceeecCCCCceEEEEECCCcc-cccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 88999999999 56899999999999999987642 11122355677899999999999999875 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe-CCCcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~-s~~tI~lWD~~tg~~l~ 346 (842)
|+.+++..+++. + ...+..+.+..+|.++.++ .|+.|+|||.++|+++.
T Consensus 160 nv~tgeali~l~-h-----------------------------pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 160 NVGTGEALITLD-H-----------------------------PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred eccCCceeeecC-C-----------------------------CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee
Confidence 999887655443 1 2234455566666666554 47899999999998865
Q ss_pred E
Q 003171 347 V 347 (842)
Q Consensus 347 ~ 347 (842)
.
T Consensus 210 e 210 (472)
T KOG0303|consen 210 E 210 (472)
T ss_pred e
Confidence 4
No 175
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.26 E-value=6.9e-11 Score=123.29 Aligned_cols=96 Identities=21% Similarity=0.266 Sum_probs=80.4
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g~~~ 226 (842)
|.-|-|||-|+.+....+. ++ .| +.+|..+.+.|+. ++|.|||.|.+||+|++.+.
T Consensus 112 G~~GvIrVid~~~~~~~~~-----------------~~--gh-G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--- 168 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKN-----------------YR--GH-GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--- 168 (385)
T ss_pred cceeEEEEEecchhhhccc-----------------ee--cc-CccchhhhcCCCCCcEEEEecCCceEEEEeccCC---
Confidence 5678999999976554432 22 23 6789999999965 79999999999999999997
Q ss_pred CCCCcceeEEe---cccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 227 SDDGFGEVLSW---QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 227 ~~~~~~~~~~l---~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
.++..+ .||++.|.++.|+.+|. |+|++.|.+|++|++..
T Consensus 169 -----~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 169 -----VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred -----eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 566655 68999999999999997 89999999999999974
No 176
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=3.9e-09 Score=122.67 Aligned_cols=355 Identities=16% Similarity=0.180 Sum_probs=181.6
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003171 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNAR 223 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g 223 (842)
-..+..++.+.+|+..+.....+ ++.-.++|+-++.|.+++|.++++|+|..||.|.+|.--+.
T Consensus 174 ~~~i~~~~~~~~~~v~~~~~~~~----------------~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~ 237 (792)
T KOG1963|consen 174 FKGIVHMCKIHIYFVPKHTKHTS----------------SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS 237 (792)
T ss_pred EEEEEEeeeEEEEEecccceeec----------------cchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc
Confidence 34456678899999865332221 11112233456899999999999999999999999974431
Q ss_pred ccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcccee-----------ecCCCceeeeEEEEe
Q 003171 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKAL-----------SLKPEERHTAALIVE 291 (842)
Q Consensus 224 ~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l-----------~~~~~~~~~~~l~~~ 291 (842)
. ..-.....|.=|...|++++|+++|. |+||+..+.+-+|.++++++.+ ...++........-+
T Consensus 238 ~----~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 238 S----DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred c----cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecC
Confidence 0 11122344555899999999999997 8999999999999999866432 112211111111112
Q ss_pred eceeeccc-----ceeccceeee-------ecCCEEEEEEcC-CCCEEEEeCCCcEEEEEccCCcEEEEeecC------C
Q 003171 292 RSYIDLRS-----HLSVNGFSSI-------LTSDIKNLLSDH-SRAKVWSAGFLSFALWDARTRELLKVFNID------G 352 (842)
Q Consensus 292 ~s~~~l~~-----~~~~~~~~~~-------~s~~v~~las~~-~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~------~ 352 (842)
.++..+++ ..++.|..+. +..-...+..++ .+..+..+..+.|.+||+.+.+.+..+..- +
T Consensus 314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~ 393 (792)
T KOG1963|consen 314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDG 393 (792)
T ss_pred ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCC
Confidence 22222221 1222332221 111234555666 445666777789999999887766544321 1
Q ss_pred ceEeeeeccc---CCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE-EEEC
Q 003171 353 QIENRVDMSL---LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA-LTTS 428 (842)
Q Consensus 353 ~~~~~~~~s~---~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a-l~~s 428 (842)
.....+.... .....+-.+..+++-.-...++ ...+.||+...+.- .+.+.++- ...|.....+ +..+
T Consensus 394 ~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~-e~~LKFW~~n~~~k------t~~L~T~I-~~PH~~~~vat~~~~ 465 (792)
T KOG1963|consen 394 DVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG-EVSLKFWQYNPNSK------TFILNTKI-NNPHGNAFVATIFLN 465 (792)
T ss_pred cceeEEeeeeehhhccceEEEEeeeeehhhhccCc-eEEEEEEEEcCCcc------eeEEEEEE-ecCCCceeEEEEEec
Confidence 1000000000 0001110010111000000010 12345554321100 00000000 0123222222 2233
Q ss_pred CC-C-cEEEEeCCCeEEEEcCCC-----------CeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCC-c-cc
Q 003171 429 ID-G-MIWTGGANGLLLQWDPNG-----------NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-N-LL 491 (842)
Q Consensus 429 ~d-g-~l~Sgs~DgtIrlWD~~g-----------~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g-~-~i 491 (842)
+- . ++++++.||.+|+|-.++ .|...-..|..++++.++ ||+.|+. +.|++|.+||... + +.
T Consensus 466 ~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~~~~~l~ 544 (792)
T KOG1963|consen 466 PTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV-SFDDTITIWDYDTKNELL 544 (792)
T ss_pred CcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE-ecCCEEEEecCCChhhhh
Confidence 22 2 578999999999997632 132222236777776654 7877766 5688999999764 2 21
Q ss_pred ccccccccCEEEEEe----CCCEEEEEcCCCCeeeccccC
Q 003171 492 GGWVAHSSPVIKMAV----GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 492 ~~l~gH~~~V~sla~----dg~~l~S~S~DgtIrvWd~~~ 527 (842)
-+...-..++..+.+ .....+...+-..+.+|++-+
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~ 584 (792)
T KOG1963|consen 545 CTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLS 584 (792)
T ss_pred ccccccccchHhHhhhcccccccceeeccCceEehHhhhh
Confidence 122111112222221 222344555667778888643
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=8e-10 Score=129.48 Aligned_cols=278 Identities=14% Similarity=0.135 Sum_probs=163.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc---CCcEEEEEEecCCC---EEEeeCCCcEEE
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH---RGPVLSLCISSYGD---LWSGSEGGGIKI 266 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH---~~~V~slafs~dG~---L~SgS~DgtIrv 266 (842)
+-..+.++|=...|+++...-+|++||.+.+ +....|.-+ ...|+.|.+-.+-. |++||.||.|||
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--------~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKG--------RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccC--------ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence 3455677776677888776778999999886 333333322 35799999876543 689999999999
Q ss_pred EeCC-CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEE-cCCCCEEEEeCC-CcEEEEEccCCc
Q 003171 267 WPWE-AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAGF-LSFALWDARTRE 343 (842)
Q Consensus 267 Wd~~-t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las-~~~~~~v~s~s~-~tI~lWD~~tg~ 343 (842)
|+-- ++.+.. .+++. +..+.++. ....+.. ++.. ....+.+.++++ +.|+|||+.+..
T Consensus 1138 wk~y~~~~~~~-------eLVTa-----w~~Ls~~~------~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~ 1198 (1387)
T KOG1517|consen 1138 WKDYADKWKKP-------ELVTA-----WSSLSDQL------PGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ 1198 (1387)
T ss_pred ecccccccCCc-------eeEEe-----eccccccC------ccCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccce
Confidence 9742 110100 11100 00011110 0001111 2221 223345555554 789999998876
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec---------Cc
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---------GG 414 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~---------g~ 414 (842)
++......... ... ..+.. ...+.....|-+||..|+-.+ -.
T Consensus 1199 ~~~diP~~s~t---------~vT---------aLS~~-----------~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1199 VVADIPYGSST---------LVT---------ALSAD-----------LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred eEeecccCCCc---------cce---------eeccc-----------ccCCceEEEeecCCceEEeecccCCcccccee
Confidence 65443211100 000 00110 011234456667776666541 12
Q ss_pred cccCCCc--eEEEEECCCC--cEEEEeCCCeEEEEcCCCCeee---eeecCC--c-cEEEEEe--cCCEEEEEecCcEEE
Q 003171 415 FGDDNRR--TEALTTSIDG--MIWTGGANGLLLQWDPNGNRLQ---DFQYLP--F-AVQCLCT--FGSQIWVGYMNGIVQ 482 (842)
Q Consensus 415 ~~~~~~~--v~al~~s~dg--~l~Sgs~DgtIrlWD~~g~~l~---~l~~H~--~-~V~sls~--dG~~LasGs~DgtIr 482 (842)
+..|+.. |..+.+-+.| .|+|||.||.|++||+.+.... ++..|. + .++++.. +...||+|+. +.|+
T Consensus 1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ik 1328 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIK 1328 (1387)
T ss_pred ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEE
Confidence 3345554 6666666644 5999999999999999653222 222333 2 4777765 5679999988 9999
Q ss_pred EEeCCCcccccccccc-------cCEEEEEeCCC--EEEEEcCCCCeeeccccC
Q 003171 483 VLDLEGNLLGGWVAHS-------SPVIKMAVGAG--YIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 483 lWD~~g~~i~~l~gH~-------~~V~sla~dg~--~l~S~S~DgtIrvWd~~~ 527 (842)
||++.|+.+..++-+. +.+.|+++++- .++.|+.|.+|.|+....
T Consensus 1329 Iy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1329 IYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred EEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 9999987665555332 45688888765 467889999999987543
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.24 E-value=3.5e-11 Score=127.99 Aligned_cols=172 Identities=14% Similarity=0.145 Sum_probs=119.7
Q ss_pred cccCCCceEEEEECC--CCcEEEEeCCCeEEEEcC-CC-------CeeeeeecCCccEEEEEec---CCEEEEEecCcEE
Q 003171 415 FGDDNRRTEALTTSI--DGMIWTGGANGLLLQWDP-NG-------NRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIV 481 (842)
Q Consensus 415 ~~~~~~~v~al~~s~--dg~l~Sgs~DgtIrlWD~-~g-------~~l~~l~~H~~~V~sls~d---G~~LasGs~DgtI 481 (842)
+.+|...|..+.+.| |..|+|||.|.+|++|++ ++ +.+..|.||...|--+... ...|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 456777788888877 345899999999999998 43 4567788999999988753 4589999999999
Q ss_pred EEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCCCcchhhhhhcccccccccccceeEEEEE
Q 003171 482 QVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGT 558 (842)
Q Consensus 482 rlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~t 558 (842)
.+||+. |..+-++. |.+.|+++.+ ||++++|.+.|+.|||||.+.......-...+-.+. ..-||++.
T Consensus 157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~--------~Raifl~~ 227 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP--------ARAIFLAS 227 (472)
T ss_pred EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCc--------ceeEEecc
Confidence 999997 66666676 9999999985 899999999999999999776544332222211111 11233332
Q ss_pred EEeC---CCCCCcccccccccCCCCCceEEEEEeecccCccchh
Q 003171 559 WNVG---QGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFL 599 (842)
Q Consensus 559 wNv~---~~~~~~~~l~~~l~~~~~~~di~viglQE~~~~~~~~ 599 (842)
-++. -.+.+..++.=|=......| ++|||++-+.|.+
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~nl~eP----~~~~elDtSnGvl 267 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPNNLEEP----IALQELDTSNGVL 267 (472)
T ss_pred CceeeeccccccccceeccCcccccCc----ceeEEeccCCceE
Confidence 2221 12333334444544444455 8999998665543
No 179
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.24 E-value=6.6e-10 Score=120.43 Aligned_cols=158 Identities=16% Similarity=0.234 Sum_probs=99.7
Q ss_pred CCEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCC-CEEEEEeCCCcEEEE
Q 003171 142 EEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCW 218 (842)
Q Consensus 142 ~~~l~~~~--D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg-~~LaSGs~DGtIrlW 218 (842)
+..+.+.. -|.|-+||+.+-... ++. -+....| .++|.||.|+|.+ ..|++.|+||+||+=
T Consensus 199 ~~~lva~GdK~G~VG~Wn~~~~~~d--------------~d~-v~~f~~h-s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 199 NRKLVAVGDKGGQVGLWNFGTQEKD--------------KDG-VYLFTPH-SGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred cceEEEEccCCCcEEEEecCCCCCc--------------cCc-eEEeccC-CccccceEecCCChhheeeeccCceeeee
Confidence 33666644 469999999521111 111 1222234 7899999999965 789999999999999
Q ss_pred ECCCCcc----------------------------CCCCCc---------ceeEEecccCCcEEEEEEecCCC--EEEee
Q 003171 219 KMNARLL----------------------------DSDDGF---------GEVLSWQAHRGPVLSLCISSYGD--LWSGS 259 (842)
Q Consensus 219 dl~~g~~----------------------------~~~~~~---------~~~~~l~gH~~~V~slafs~dG~--L~SgS 259 (842)
|+++..- +....| .+.-.|.-|...|++|++.|-.. |+|||
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s 342 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATAS 342 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecc
Confidence 9887631 000000 01112345778999999999764 89999
Q ss_pred CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe-CCCcEEEEE
Q 003171 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWD 338 (842)
Q Consensus 260 ~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~-s~~tI~lWD 338 (842)
.|+|+||||+......-+ + .+..+ .| .-.|....+++.++.|++. .|..|+|||
T Consensus 343 ~D~T~kIWD~R~l~~K~s----p-~lst~----------~H----------rrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 343 LDQTAKIWDLRQLRGKAS----P-FLSTL----------PH----------RRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred cCcceeeeehhhhcCCCC----c-ceecc----------cc----------cceeeeeEEcCCCCceEeeccCCceEEee
Confidence 999999999965211100 0 00000 01 2235566677777666654 478999999
Q ss_pred cc
Q 003171 339 AR 340 (842)
Q Consensus 339 ~~ 340 (842)
..
T Consensus 398 ss 399 (498)
T KOG4328|consen 398 SS 399 (498)
T ss_pred cc
Confidence 74
No 180
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=3.5e-10 Score=118.72 Aligned_cols=257 Identities=11% Similarity=0.133 Sum_probs=164.3
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEEeCCCccceeecCC
Q 003171 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (842)
Q Consensus 204 ~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~t~~~~l~~~~ 280 (842)
..+|++-..|+||++|..++ +.+..++||...++.|.|..+ +. +.|||.||+||+||+.+....-..
T Consensus 41 ~~vav~lSngsv~lyd~~tg--------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~-- 110 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG--------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI-- 110 (376)
T ss_pred eeEEEEecCCeEEEEeccch--------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe--
Confidence 56889999999999999997 677889999999999999875 23 679999999999999763221110
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-----CcEEEEEccCCcE-EEEee-cCCc
Q 003171 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-----LSFALWDARTREL-LKVFN-IDGQ 353 (842)
Q Consensus 281 ~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-----~tI~lWD~~tg~~-l~~l~-~~~~ 353 (842)
....+ . .....+++..-.+..+.+++- -.+.+||++..+. ++.+. .|.
T Consensus 111 ---------------~~~~~--~-------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~- 165 (376)
T KOG1188|consen 111 ---------------SWTQQ--S-------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN- 165 (376)
T ss_pred ---------------eccCC--C-------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc-
Confidence 11111 0 112234444334445555542 2588999987654 43332 111
Q ss_pred eEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCc-ceEEecCCcEEEEee-cCc-----c---ccCCCceE
Q 003171 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAA-KGG-----F---GDDNRRTE 423 (842)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~-~g~-----~---~~~~~~v~ 423 (842)
-.+..+.|.|..+ ..+.|+.||...+-. ++. + ..+...|.
T Consensus 166 ------------------------------DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~ 215 (376)
T KOG1188|consen 166 ------------------------------DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIH 215 (376)
T ss_pred ------------------------------CcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceee
Confidence 1122356776655 446788888766543 221 1 12345577
Q ss_pred EEEECCCC--cEEEEeCCCeEEEEcC-CCCeeeeeec-------------CCccEEEEEe-cCCEEEEEec-CcEEEEEe
Q 003171 424 ALTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDFQY-------------LPFAVQCLCT-FGSQIWVGYM-NGIVQVLD 485 (842)
Q Consensus 424 al~~s~dg--~l~Sgs~DgtIrlWD~-~g~~l~~l~~-------------H~~~V~sls~-dG~~LasGs~-DgtIrlWD 485 (842)
.+.|..++ +|+.-+..++..+|++ .|.+...+.. -.+-|.+.++ ++...+.++. -+..+++-
T Consensus 216 ~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~ 295 (376)
T KOG1188|consen 216 LIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFP 295 (376)
T ss_pred eeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEE
Confidence 78898888 6888888999999999 5765443331 1223445555 3344444443 45555543
Q ss_pred ---CC-C---cccccccc-cccCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 486 ---LE-G---NLLGGWVA-HSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 486 ---~~-g---~~i~~l~g-H~~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
.. + +.+..+.| |...|.++.+ .+..++|||.||.+.+|..
T Consensus 296 ~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 296 LVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 22 2 35677777 7777788775 4668999999999999985
No 181
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.23 E-value=4.3e-10 Score=122.45 Aligned_cols=262 Identities=15% Similarity=0.145 Sum_probs=161.8
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE--eCCCcEEEEECC
Q 003171 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG--HRDGRIMCWKMN 221 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG--s~DGtIrlWdl~ 221 (842)
.+.+++-..+++||+.......| -.+.+. ...+.++.+..... |+++ +.|..|++|.-.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~--------------~~~~t~----~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~ 65 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSE--------------YVHQTA----EPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKD 65 (673)
T ss_pred eeeeccCCceEEeecccccCccc--------------cccCCC----CCcceeeeccccce-EEEeecCCceeEEEeccc
Confidence 45567777999999965432222 011100 22377777875442 4444 466789999765
Q ss_pred CCccCCCCCcceeEEeccc-CCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccc
Q 003171 222 ARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (842)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~ 300 (842)
+.. ........+.|- .--|.+..+| -.+++|+..++|||||+..... +. -+++|
T Consensus 66 g~~----~~Vp~~~k~~gd~~~Cv~~~s~S--~y~~sgG~~~~Vkiwdl~~kl~---hr----------------~lkdh 120 (673)
T KOG4378|consen 66 GKT----PEVPRVRKLTGDNAFCVACASQS--LYEISGGQSGCVKIWDLRAKLI---HR----------------FLKDH 120 (673)
T ss_pred CCC----CccceeeccccchHHHHhhhhcc--eeeeccCcCceeeehhhHHHHH---hh----------------hccCC
Confidence 531 111122223332 1223333443 1378999999999999964211 10 12223
Q ss_pred eeccceeeeecCCEEEEEEcCCCCEEEEeCCC-cEEEEEccCCcEEEEeecC-CceEeeeecccCCCcccccceEEEEEe
Q 003171 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFALWDARTRELLKVFNID-GQIENRVDMSLLPDFAMEDEFKTKIVT 378 (842)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~-tI~lWD~~tg~~l~~l~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~s 378 (842)
...|.++.....+..|++++++ -|.|-.+.|+..-.+|..+ +|
T Consensus 121 ----------~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq------------------------- 165 (673)
T KOG4378|consen 121 ----------QSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ------------------------- 165 (673)
T ss_pred ----------cceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCC-------------------------
Confidence 3457777777777788888864 5777777776554444321 11
Q ss_pred cCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEeCCCeEEEEcCCCCe-e-ee
Q 003171 379 SSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPNGNR-L-QD 454 (842)
Q Consensus 379 ~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~~g~~-l-~~ 454 (842)
.|.-|.+++-.+ |.+++.+|+|.|||++|.. + .-
T Consensus 166 ------------------------------------------svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 166 ------------------------------------------SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred ------------------------------------------eEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence 112233444443 6788999999999998743 3 33
Q ss_pred eecCCccEEEEE--ec-CCEEEEEecCcEEEEEeCCCc-ccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 455 FQYLPFAVQCLC--TF-GSQIWVGYMNGIVQVLDLEGN-LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 455 l~~H~~~V~sls--~d-G~~LasGs~DgtIrlWD~~g~-~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
...|+.+-..|+ +. ...|++-+.|..|.+||...+ ....+. -..+..+|+ ++|.+|+.|...|.|..+|++.
T Consensus 204 ~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 204 SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 456887766554 43 458889999999999998744 333332 345677777 4889999999999999999875
No 182
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.20 E-value=5.1e-10 Score=115.01 Aligned_cols=233 Identities=15% Similarity=0.117 Sum_probs=145.5
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCC-------CcEEEEeCCCccceeecCCC
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEG-------GGIKIWPWEAIEKALSLKPE 281 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~D-------gtIrvWd~~t~~~~l~~~~~ 281 (842)
.|+.|.+-+++.+. + .-....|..|.+.|..|+-+|-.. |+|+-.| ..+-||.+......-...+
T Consensus 38 ~dNqVhll~~d~e~----s-~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~t- 111 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEG----S-ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSST- 111 (370)
T ss_pred CcceeEEEEecCcc----c-hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccch-
Confidence 45666666665541 1 112334667788999999888654 4554332 3567898753211100000
Q ss_pred ceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEE-EEeecCCceEeeeec
Q 003171 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELL-KVFNIDGQIENRVDM 360 (842)
Q Consensus 282 ~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l-~~l~~~~~~~~~~~~ 360 (842)
-.++.. |. ....+++.|+...|++.++++..+..|.+|++..+..+ ..+......
T Consensus 112 lE~v~~---------Ld---------teavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~------ 167 (370)
T KOG1007|consen 112 LECVAS---------LD---------TEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESA------ 167 (370)
T ss_pred hhHhhc---------CC---------HHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccc------
Confidence 000000 00 00134788999999999999999999999999765432 111100000
Q ss_pred ccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCC
Q 003171 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANG 440 (842)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~Dg 440 (842)
+++ ..| + .|.+..| .||..+....|+
T Consensus 168 ----------e~~---------------~~f--------t-----------sg~WspH----------Hdgnqv~tt~d~ 193 (370)
T KOG1007|consen 168 ----------EMR---------------HSF--------T-----------SGAWSPH----------HDGNQVATTSDS 193 (370)
T ss_pred ----------ccc---------------cee--------c-----------ccccCCC----------CccceEEEeCCC
Confidence 000 000 0 1122221 245544445689
Q ss_pred eEEEEcC-CCCeeeee-ecCCccEEEEEecCC---EEEEEecCcEEEEEeCC-C-cccccccccccCEEEEEe---CCCE
Q 003171 441 LLLQWDP-NGNRLQDF-QYLPFAVQCLCTFGS---QIWVGYMNGIVQVLDLE-G-NLLGGWVAHSSPVIKMAV---GAGY 510 (842)
Q Consensus 441 tIrlWD~-~g~~l~~l-~~H~~~V~sls~dG~---~LasGs~DgtIrlWD~~-g-~~i~~l~gH~~~V~sla~---dg~~ 510 (842)
+++.||+ +-++.-.+ ..|...|..+.++.+ +|++|+.||.||+||.+ . .+++++.+|+.+||+|.+ ..+.
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL 273 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE
Confidence 9999999 54443333 468889999876532 89999999999999987 3 479999999999999985 4578
Q ss_pred EEEEcCCCCeeeccccC
Q 003171 511 IFTLANHGGIRGWNVTS 527 (842)
Q Consensus 511 l~S~S~DgtIrvWd~~~ 527 (842)
++|+|.|..|.+|...+
T Consensus 274 iLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASS 290 (370)
T ss_pred EEecCCCceeEEEeccc
Confidence 99999999999998644
No 183
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.7e-10 Score=136.93 Aligned_cols=231 Identities=19% Similarity=0.266 Sum_probs=150.6
Q ss_pred EEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC
Q 003171 144 QLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG-VVWSGHRDGRIMCWKM 220 (842)
Q Consensus 144 ~l~~~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~-~LaSGs~DGtIrlWdl 220 (842)
.|.+| .||.|-+||........ +.....+...| .++|..|.|++.++ +||||+.||.|-|||+
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~-------------~~~~la~~~~h-~G~V~gLDfN~~q~nlLASGa~~geI~iWDl 146 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANA-------------SEEVLATKSKH-TGPVLGLDFNPFQGNLLASGADDGEILIWDL 146 (1049)
T ss_pred ceeeccccCCceEEecchhhccCc-------------chHHHhhhccc-CCceeeeeccccCCceeeccCCCCcEEEecc
Confidence 46764 59999999987642111 11111122345 88999999999766 9999999999999999
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecc
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~ 298 (842)
..-. .++... -+.-.+.|.+|+|...-. |+||+.+|.+-|||+...+..+.+......+
T Consensus 147 nn~~----tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~------------- 207 (1049)
T KOG0307|consen 147 NKPE----TPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM------------- 207 (1049)
T ss_pred CCcC----CCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc-------------
Confidence 8742 122111 122356799999976433 7899999999999997654444443221100
Q ss_pred cceeccceeeeecCCEEEEEEcCCCC-EEEEeC-C---CcEEEEEccCCc-EEEEeecCCceEeeeecccCCCcccccce
Q 003171 299 SHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-F---LSFALWDARTRE-LLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~---~tI~lWD~~tg~-~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
.+..++-.++.. .|+.++ + -.|.+||++.-. .+++
T Consensus 208 --------------~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~------------------------- 248 (1049)
T KOG0307|consen 208 --------------HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI------------------------- 248 (1049)
T ss_pred --------------ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh-------------------------
Confidence 011122222221 233333 2 268999986311 1111
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC-c-EEEEeCCCeEEEEcC-CC
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NG 449 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~-l~Sgs~DgtIrlWD~-~g 449 (842)
+..|...|.++.+.+.+ . |+|++.|+.|.+|+. +|
T Consensus 249 ------------------------------------------~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 249 ------------------------------------------LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred ------------------------------------------hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 22344445555554433 4 789999999999999 79
Q ss_pred CeeeeeecCCccEEEEEe---cCCEEEEEecCcEEEEEeCCC
Q 003171 450 NRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLEG 488 (842)
Q Consensus 450 ~~l~~l~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~g 488 (842)
+.+.++-...+++..+.+ +...+++++.||.|.|+.+.|
T Consensus 287 Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 287 EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 999999888888888765 345899999999999999863
No 184
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=2.8e-10 Score=122.57 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=61.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcc
Q 003171 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 195 ~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~ 273 (842)
.+++|+++|..|++|..||++|+|+...- ..+....+|.+.|.+|.|||||+ |+|-+.| ..+||+++++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence 78999999999999999999999997663 45666789999999999999998 6888888 89999998863
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.17 E-value=5.3e-09 Score=121.20 Aligned_cols=281 Identities=14% Similarity=0.093 Sum_probs=162.4
Q ss_pred cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCC
Q 003171 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDS 227 (842)
Q Consensus 149 ~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~ 227 (842)
.+..+.|||+..... |... +.-.++|.|+.|.| +..+|+.|+++|.|-+||+..+..
T Consensus 220 ~~~~~~vW~~~~p~~-------------------Pe~~-~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~-- 277 (555)
T KOG1587|consen 220 PDGVLLVWSLKNPNT-------------------PELV-LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSD-- 277 (555)
T ss_pred CCceEEEEecCCCCC-------------------ceEE-EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCC--
Confidence 345899999976421 1111 11167899999999 558999999999999999987630
Q ss_pred CCCcceeEEecccCCcEEEEEEecCC---CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceecc
Q 003171 228 DDGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (842)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG---~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~ 304 (842)
..+......--.|+.+|+.+.+..+- .++|+|.||.|..|+++...........+... ........
T Consensus 278 ~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~--------~~~~~~~~--- 346 (555)
T KOG1587|consen 278 TPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK--------HKGQQSSK--- 346 (555)
T ss_pred CCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc--------cccccccc---
Confidence 00222222334689999999997652 39999999999999875422100000000000 00000000
Q ss_pred ceeeeecCCEEEEEEcCCC-CEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCC
Q 003171 305 GFSSILTSDIKNLLSDHSR-AKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (842)
Q Consensus 305 ~~~~~~s~~v~~las~~~~-~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~ 383 (842)
...+..+.+.+.. ..+..|++. |.+.+ +.+++
T Consensus 347 ------~~~~t~~~F~~~~p~~FiVGTe~---------G~v~~--------------------------------~~r~g 379 (555)
T KOG1587|consen 347 ------AVGATSLKFEPTDPNHFIVGTEE---------GKVYK--------------------------------GCRKG 379 (555)
T ss_pred ------ccceeeEeeccCCCceEEEEcCC---------cEEEE--------------------------------EeccC
Confidence 1112223322211 112222211 11100 00000
Q ss_pred ccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCC--CCeeeeeecCCc
Q 003171 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN--GNRLQDFQYLPF 460 (842)
Q Consensus 384 ~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~--g~~l~~l~~H~~ 460 (842)
.... .. ....++ ..+.-|.+.|.++.++|-+. +...+.|-+||||... ...+-.+..+..
T Consensus 380 ~~~~-~~------~~~~~~----------~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~ 442 (555)
T KOG1587|consen 380 YTPA-PE------VSYKGH----------STFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD 442 (555)
T ss_pred Cccc-cc------cccccc----------ccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccc
Confidence 0000 00 000000 01334667788888888765 4333348899999874 456666777888
Q ss_pred cEEEEEec---CCEEEEEecCcEEEEEeCCC---cccccccccccCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 461 AVQCLCTF---GSQIWVGYMNGIVQVLDLEG---NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 461 ~V~sls~d---G~~LasGs~DgtIrlWD~~g---~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
.|++++.. ...++++..||.|.+||+.- .++.+..-+......+.+ .|+.|+.|...|+|.+|++.
T Consensus 443 ~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 443 YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 89998754 34888999999999999852 355555555444455553 58889999999999999973
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.16 E-value=8.1e-11 Score=134.62 Aligned_cols=260 Identities=15% Similarity=0.166 Sum_probs=169.2
Q ss_pred ceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003171 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (842)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~ 310 (842)
+.+..+.||.++|+|++|+..|+ +++||+|..+|||..++..+.- +++||
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA-------------------s~rGh---------- 231 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA-------------------SCRGH---------- 231 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc-------------------cCCCC----------
Confidence 33456789999999999999998 8999999999999987754322 23344
Q ss_pred cCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceee
Q 003171 311 TSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSF 389 (842)
Q Consensus 311 s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~ 389 (842)
+++++-++.+..+..+++++ |..|++|-+.+|.++.++.+|...+..+++++.+..+-+++.+.|.+.-. . .
T Consensus 232 s~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~sss~dgt~~~wd~r~~----~---~ 304 (1113)
T KOG0644|consen 232 SGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRASSSDDGTCRIWDARLE----P---R 304 (1113)
T ss_pred ccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccccCCCCCceEecccccc----c---c
Confidence 66777888877777888887 56899999999999999999887777778877654333333222111100 0 0
Q ss_pred eEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCCCCeeeeeecCCccE---EEE
Q 003171 390 GFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAV---QCL 465 (842)
Q Consensus 390 ~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V---~sl 465 (842)
.+.++- -.+.+. ..+.++.+-..+. .+||+.|++-+.|...-. ..|...+ +..
T Consensus 305 ~y~prp-----------------~~~~~~-~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l-----~~~~~~lif~t~s 361 (1113)
T KOG0644|consen 305 IYVPRP-----------------LKFTEK-DLVDSILFENNGDRFLTGSRDGEARNHEFEQL-----AWRSNLLIFVTRS 361 (1113)
T ss_pred ccCCCC-----------------CCcccc-cceeeeeccccccccccccCCcccccchhhHh-----hhhccceEEEecc
Confidence 000000 001111 2233344444444 789999998888876311 1111111 111
Q ss_pred EecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe---CCCEEEEEcCCCCeeeccccCCCCCcchhhhhhcc
Q 003171 466 CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAG 541 (842)
Q Consensus 466 s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrvWd~~~~~~~d~~l~~~l~~ 541 (842)
+....+.+++=.+-.+.+|++. |.+.+.+.+|.+.++.|.. ++....|++.||.+.|||+....|+.-........
T Consensus 362 sd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl 441 (1113)
T KOG0644|consen 362 SDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKL 441 (1113)
T ss_pred ccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccccee
Confidence 1112456666678899999985 8999999999999998873 66677799999999999987766654433222222
Q ss_pred ccccccccc
Q 003171 542 KEFLYTRME 550 (842)
Q Consensus 542 r~~~y~~~~ 550 (842)
-.+.|++.+
T Consensus 442 ~d~kFSqdg 450 (1113)
T KOG0644|consen 442 VDGKFSQDG 450 (1113)
T ss_pred eccccCCCC
Confidence 234444443
No 187
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=2e-09 Score=123.86 Aligned_cols=208 Identities=13% Similarity=0.061 Sum_probs=126.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEE-eeCCCcEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS-GSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DG---tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S-gS~DgtIr 265 (842)
..+|.+..|+|||+.|+..+.++ .|++||+.++. .+.+..+.+|. .+++|+|||+ |+. .+.||.++
T Consensus 203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~------~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA------RKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc------eEEEecCCCcc---CceeECCCCCEEEEEEecCCcEE
Confidence 55789999999999999887653 69999998862 12233355554 3679999997 654 45788887
Q ss_pred EEeC--CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccC
Q 003171 266 IWPW--EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART 341 (842)
Q Consensus 266 vWd~--~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~t 341 (842)
||.+ .++. ...+.. + ...+.....++++..++.++ ++...||++..
T Consensus 274 Iy~~d~~~~~-~~~lt~-------------------~----------~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 274 IYVMGANGGT-PSQLTS-------------------G----------AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred EEEEECCCCC-eEeecc-------------------C----------CCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 7754 3321 111110 0 11122344556666555443 24566666432
Q ss_pred CcE-EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCC
Q 003171 342 REL-LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (842)
Q Consensus 342 g~~-l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~ 420 (842)
... ...+ + +..
T Consensus 324 ~~~~~~~l----------------------------------------------------~----------------~~~ 335 (429)
T PRK01742 324 SGGGASLV----------------------------------------------------G----------------GRG 335 (429)
T ss_pred CCCCeEEe----------------------------------------------------c----------------CCC
Confidence 100 0000 0 000
Q ss_pred ceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEe---CCCccccccc
Q 003171 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLD---LEGNLLGGWV 495 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD---~~g~~i~~l~ 495 (842)
....++|||+ |+.++.++ +.+||+ +|+.......+...-.++++||++|+.++.++.+++|+ .+|+.++.+.
T Consensus 336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 1235788887 66666666 566998 56544322222222235688999999999999888776 4688889999
Q ss_pred ccccCEEEEEeCC
Q 003171 496 AHSSPVIKMAVGA 508 (842)
Q Consensus 496 gH~~~V~sla~dg 508 (842)
+|.+.+...++.+
T Consensus 413 ~~~g~~~~p~wsp 425 (429)
T PRK01742 413 GSDGQVKFPAWSP 425 (429)
T ss_pred CCCCCCCCcccCC
Confidence 9988887776554
No 188
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.12 E-value=4e-09 Score=125.61 Aligned_cols=250 Identities=16% Similarity=0.218 Sum_probs=145.8
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
.+.|..++.++. +.+++|||.||+||+|+...-.++. ..++...++.--.+.|.++.+.+.|+ ++.|+.||.|++-+
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence 566777777664 4999999999999999976432110 12234455544467899999999887 88889999999999
Q ss_pred CCCc--cceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC--CC-CEEEEeCCCcEEEEEccCCc
Q 003171 269 WEAI--EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SR-AKVWSAGFLSFALWDARTRE 343 (842)
Q Consensus 269 ~~t~--~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~--~~-~~v~s~s~~tI~lWD~~tg~ 343 (842)
++-. .+.. . ... + ..+++.. +. -+.+-++.. .. ..++......|..||+++..
T Consensus 1127 id~~~~~~~~-~-------~~~---r-i~n~~~~---g~-------vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1127 IDHYNVSKRV-A-------TQV---R-IPNLKKD---GV-------VVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred ccccccccce-e-------eee---e-cccccCC---Cc-------eEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 8641 1100 0 000 0 0000000 00 011111111 11 12223334567788876532
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceE
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (842)
-+-+++ +....+.|+
T Consensus 1185 ~~w~lk-----------------------------------------------------------------~~~~hG~vT 1199 (1431)
T KOG1240|consen 1185 DAWRLK-----------------------------------------------------------------NQLRHGLVT 1199 (1431)
T ss_pred hHHhhh-----------------------------------------------------------------cCcccccee
Confidence 211100 111234577
Q ss_pred EEEECCCCc-EEEEeCCCeEEEEcCC-CCeeeeee-cCCccEEEEE--e-cC--CEEEEEe--cCcEEEEEeCC-Ccccc
Q 003171 424 ALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQ-YLPFAVQCLC--T-FG--SQIWVGY--MNGIVQVLDLE-GNLLG 492 (842)
Q Consensus 424 al~~s~dg~-l~Sgs~DgtIrlWD~~-g~~l~~l~-~H~~~V~sls--~-dG--~~LasGs--~DgtIrlWD~~-g~~i~ 492 (842)
+++.+|.+. +++|+..|.+.+||+. +..+.... ++..+|+-+. + -+ ..+++++ ..+.|.+|+.+ |.+-.
T Consensus 1200 Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred EEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence 888999888 7899999999999995 55555443 3445666543 3 23 4555555 47899999987 54333
Q ss_pred ccccc-----------c------c---CEEE-EEeCCCEEEEEcCCCCeeeccccCC
Q 003171 493 GWVAH-----------S------S---PVIK-MAVGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 493 ~l~gH-----------~------~---~V~s-la~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
++-.. . . .+.+ +...+..+++|+.|..||.||...|
T Consensus 1280 vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1280 VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 33222 1 1 1111 2223456889999999999997654
No 189
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.11 E-value=4.9e-10 Score=119.95 Aligned_cols=176 Identities=19% Similarity=0.177 Sum_probs=126.8
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCC-CCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSD-DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~-~LaSGs~DGtIrlWdl~~g~~~~~-~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (842)
..||..+.|.+++. .|+||+.|..||+|.++.+..... ...+....|..|..+|+.|.|+|+|. |+||+++|.|-+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56899999988776 999999999999999877532110 12333456789999999999999998 6899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKV 347 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~ 347 (842)
...... .. |.++ +. ..
T Consensus 93 k~~~~~------------------------------------------~~--------------------~~d~-e~-~~ 108 (434)
T KOG1009|consen 93 KQGDVR------------------------------------------IF--------------------DADT-EA-DL 108 (434)
T ss_pred EecCcC------------------------------------------Cc--------------------cccc-hh-hh
Confidence 752200 00 0001 00 00
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
..+ .|.+.. .+.+|...+..+++
T Consensus 109 ---~ke--------------------~w~v~k----------------------------------~lr~h~~diydL~W 131 (434)
T KOG1009|consen 109 ---NKE--------------------KWVVKK----------------------------------VLRGHRDDIYDLAW 131 (434)
T ss_pred ---Ccc--------------------ceEEEE----------------------------------Eecccccchhhhhc
Confidence 000 000000 02234455667888
Q ss_pred CCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEec--CCEEEEEecCcEEEEEeCC
Q 003171 428 SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 428 s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~ 487 (842)
+||++ +++|+.|+++++||+ .|+.+..+..|...|+-++.| ++++++=+.|...+...+.
T Consensus 132 s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 132 SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred cCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 99998 789999999999999 899999999999999988765 6899999999877777764
No 190
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.11 E-value=2.2e-08 Score=107.49 Aligned_cols=128 Identities=19% Similarity=0.318 Sum_probs=89.6
Q ss_pred eeEEEEecCCE--EEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeee-cCCCeEEEEEcCCCCEEEE
Q 003171 134 FLRTIVCTEEQ--LWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~~~~--l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~V~~la~dpdg~~LaS 208 (842)
++..+.+..+. ..+ |.|..||+|-+......+. ....-|...+. |..+|.++.|+|+|.+|||
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~------------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLAS 82 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG------------DMKVEYLSSLSRHTRAVNVVRFSPDGELLAS 82 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCC------------ceeEEEeecccCCcceeEEEEEcCCcCeeee
Confidence 45556655432 333 6799999998865443321 01111222233 2889999999999999999
Q ss_pred EeCCCcEEEEECCCCc---cCC-----CCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcc
Q 003171 209 GHRDGRIMCWKMNARL---LDS-----DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~---~~~-----~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~ 273 (842)
|+.+|.|.+|....-. ++. .....-...+.+|..-|..++++|++. +.+||-|.++++||+..+.
T Consensus 83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence 9999999999876210 011 011223456789999999999999998 6899999999999997654
No 191
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=1.5e-09 Score=118.48 Aligned_cols=272 Identities=17% Similarity=0.201 Sum_probs=172.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-cccCCcEEEEEEecCC---CEEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYG---DLWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG---~L~SgS~DgtIrv 266 (842)
.+-|..|-|...|..|+|||.|..|.+||...+ ...+.+ .||...|.--.|-|.. .|++++.||.||+
T Consensus 142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~--------~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSG--------SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred CCccceeeecccCceeeccCccceEEeehhhcc--------CcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 677888999999999999999999999999886 444454 5898888877787753 4899999999999
Q ss_pred EeCCCccc---eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEe-CCCcEEEEEccC
Q 003171 267 WPWEAIEK---ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSA-GFLSFALWDART 341 (842)
Q Consensus 267 Wd~~t~~~---~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~-s~~tI~lWD~~t 341 (842)
=.+....+ ...+.+ +.+.+..+++.+... .+.++ .+..+.=.|+++
T Consensus 214 s~i~~t~~~e~t~rl~~-----------------------------h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~ 264 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAP-----------------------------HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ 264 (559)
T ss_pred eeeccccceecceeccc-----------------------------ccCccceeeecCCCCCcccccccccceeeeeecc
Confidence 76633111 111111 123444555555443 33333 356677778777
Q ss_pred CcEEEEeecCCceEe-eeecccCCCcccccceEEEEEecCCCCccceeeeEeecCc-ceEEecCCcEEEEee--------
Q 003171 342 RELLKVFNIDGQIEN-RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAA-------- 411 (842)
Q Consensus 342 g~~l~~l~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~-------- 411 (842)
+.....+.....-.. ++.+. +++..+... ...+|..+-..|+..
T Consensus 265 ~~pa~~~~cr~~~~~~~v~L~--------------------------~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~ 318 (559)
T KOG1334|consen 265 DVPAEKFVCREADEKERVGLY--------------------------TIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEE 318 (559)
T ss_pred CCccceeeeeccCCccceeee--------------------------eEecCCCCccccccCChhhhhhhhcccchhhcc
Confidence 655333321000000 00000 000111000 011111111111111
Q ss_pred -cC---ccc------cCCCceEEEEECCCCc-EEEEeCCCeEEEEcCC---C----------Ceeee-eecCCcc--EEE
Q 003171 412 -KG---GFG------DDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN---G----------NRLQD-FQYLPFA--VQC 464 (842)
Q Consensus 412 -~g---~~~------~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~---g----------~~l~~-l~~H~~~--V~s 464 (842)
.| .|. ...-.|++++++.++. |++.-.|--|.|+..+ | ..++. ++||.+. |..
T Consensus 319 ~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKg 398 (559)
T KOG1334|consen 319 NNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKG 398 (559)
T ss_pred ccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccce
Confidence 00 111 2234678899997665 7666678789999652 4 23333 8898864 667
Q ss_pred EEecC---CEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEeCCC--EEEEEcCCCCeeeccc
Q 003171 465 LCTFG---SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAG--YIFTLANHGGIRGWNV 525 (842)
Q Consensus 465 ls~dG---~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~--~l~S~S~DgtIrvWd~ 525 (842)
+.+-| .|++|||.-|.|-+|+-. +++++-+.|-...|+||.+.+- .|+|.|-|.-||||--
T Consensus 399 VNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 399 VNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred eeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 77765 599999999999999987 6889999998889999998765 5889999999999974
No 192
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.09 E-value=7.9e-09 Score=115.86 Aligned_cols=266 Identities=16% Similarity=0.161 Sum_probs=164.9
Q ss_pred eeEEEEe--cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 134 FLRTIVC--TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 134 ~~~~l~~--~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
++..++. ++.+|..+.++.+.+||..++.... +++ .| ...|+|++++.||++.|||+.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llq-----------------tLK--gH-KDtVycVAys~dGkrFASG~a 73 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQ-----------------PLK--GH-KDTVYCVAYAKDGKRFASGSA 73 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCccccc-----------------ccc--cc-cceEEEEEEccCCceeccCCC
Confidence 6666765 5679999999999999987653321 222 23 778999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
|..+.+|...-. -++. -.|.+.|.||.|.|-.. |+|+|-. -.-+|..+.. .+.-+
T Consensus 74 DK~VI~W~~klE---------G~Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK--~V~K~----------- 129 (1081)
T KOG1538|consen 74 DKSVIIWTSKLE---------GILK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK--SVSKH----------- 129 (1081)
T ss_pred ceeEEEeccccc---------ceee-eccCCeeeEeecCchHHHhhhcchh-hccccChhhh--hHHhh-----------
Confidence 999999975431 1222 36999999999999776 7888853 2457877432 11100
Q ss_pred eeceeecccceeccc-eeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeec---CCceEeeeecccCCCc
Q 003171 291 ERSYIDLRSHLSVNG-FSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI---DGQIENRVDMSLLPDF 366 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~-~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~---~~~~~~~~~~s~~~~~ 366 (842)
..... .+...+++..+++.+.. ++||.|-+. +|+.-..... +...+.++.+++....
T Consensus 130 ----------kss~R~~~CsWtnDGqylalG~~--------nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~ 190 (1081)
T KOG1538|consen 130 ----------KSSSRIICCSWTNDGQYLALGMF--------NGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGE 190 (1081)
T ss_pred ----------hhheeEEEeeecCCCcEEEEecc--------CceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCC
Confidence 00111 11223444455554433 356766654 4443222221 2223334444333222
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCC----ceEEEEECCCCc-EEEEeCCCe
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR----RTEALTTSIDGM-IWTGGANGL 441 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~----~v~al~~s~dg~-l~Sgs~Dgt 441 (842)
..++.+-+..|+. ++.|..- .|++.+... ...++.+=++|. ++.|+.|+.
T Consensus 191 G~~di~aV~DW~q--------TLSFy~L-----------------sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 191 GRNDILAVADWGQ--------TLSFYQL-----------------SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred CccceEEEEeccc--------eeEEEEe-----------------cceeecccccCCCCchhheeccCCcEEEEccCCCc
Confidence 2222222111211 2333321 233332111 122344446676 889999999
Q ss_pred EEEEcCCCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC
Q 003171 442 LLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 442 IrlWD~~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (842)
++++.-+|-++.++-.-..+|+++. |++++++.|..||||-.+++.
T Consensus 246 L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 246 LSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 9999999999998877788999885 689999999999999999964
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=7.3e-09 Score=109.97 Aligned_cols=284 Identities=13% Similarity=0.117 Sum_probs=158.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc--cCCcEEEEEEecCCC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA--HRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g--H~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (842)
.+-|.++.|+.++++|+||+.|..+++|.++.... ...-+.+ .+++ |+..|.||+|....+ |+||..+++|-+-
T Consensus 56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~--~k~~KPI-~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV--RKTPKPI-GVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred ccccceeeeccCCeEEeecCCcceeeeechHHHHh--hcCCCCc-eeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 78899999999999999999999999999875310 0000222 2333 578999999988665 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCc-EE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE-LL 345 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~-~l 345 (842)
|+++.+....+. +... -++|..+...+.+..+++.+ ++-|.+||.+... .+
T Consensus 133 DiEt~qsi~V~~-~~~~--------------------------~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~ 185 (609)
T KOG4227|consen 133 DIETKQSIYVAN-ENNN--------------------------RGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI 185 (609)
T ss_pred ecccceeeeeec-ccCc--------------------------ccceeecccCCCCceEEEEecCceEEEEeccCCCCCC
Confidence 998754322111 1000 12344555555555666555 4678899997654 11
Q ss_pred EEe--ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCC---
Q 003171 346 KVF--NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR--- 420 (842)
Q Consensus 346 ~~l--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~--- 420 (842)
..+ .-.+....++.|.+... ++..+... ++. ++.|+...++ ..+++ .+.+.+-..
T Consensus 186 ~~~~~AN~~~~F~t~~F~P~~P-------~Li~~~~~-~~G----~~~~D~R~~~-----~~~~~---~~~~~~L~~~~~ 245 (609)
T KOG4227|consen 186 SLVLPANSGKNFYTAEFHPETP-------ALILVNSE-TGG----PNVFDRRMQA-----RPVYQ---RSMFKGLPQENT 245 (609)
T ss_pred ceeeecCCCccceeeeecCCCc-------eeEEeccc-cCC----CCceeecccc-----chHHh---hhccccCcccch
Confidence 111 00011001111111110 11111111 110 1122111000 00000 111111111
Q ss_pred ceEEEEECCCCc-EEEEeCCCeEEEEcCCCCeeeeeec-CC-------ccEEEEEecC-CEEEEEecCcEEEEEeCC---
Q 003171 421 RTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQY-LP-------FAVQCLCTFG-SQIWVGYMNGIVQVLDLE--- 487 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~l~~l~~-H~-------~~V~sls~dG-~~LasGs~DgtIrlWD~~--- 487 (842)
.-..+.|+|.|. +.+--.-..=.++|.-.+++-.|+- |. ..+.++++-| ..|++|+.+-.|.+|-+-
T Consensus 246 ~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 246 EWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred hhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCc
Confidence 112355777775 4433222334566773322223331 22 2344556644 479999999999999741
Q ss_pred ---C-----c-------------ccccccccccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 488 ---G-----N-------------LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 488 ---g-----~-------------~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
| . .+.+|+||.+.++.|.+ ....|+|.+-.+.+|+|.
T Consensus 326 ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 326 DSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 2 1 24578999999999986 556788999999999997
No 194
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=6e-09 Score=119.84 Aligned_cols=207 Identities=11% Similarity=-0.028 Sum_probs=123.8
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCC---CcEEEEeCCCccceeecCCCceeee
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG---GGIKIWPWEAIEKALSLKPEERHTA 286 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D---gtIrvWd~~t~~~~l~~~~~~~~~~ 286 (842)
.+..|.+||.++. ..+.+..|...|.+.+|||||+ |+.++.+ ..|++||+.+++... +..
T Consensus 182 ~~~~i~i~d~dg~---------~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~------ 245 (429)
T PRK01742 182 QPYEVRVADYDGF---------NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VAS------ 245 (429)
T ss_pred ceEEEEEECCCCC---------CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Eec------
Confidence 3578999998774 3456778888999999999998 6665543 479999997653211 000
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcE--EEEEccCCcEEEEeecCCceEeeeeccc
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSF--ALWDARTRELLKVFNIDGQIENRVDMSL 362 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI--~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (842)
+.++ ......++++.+|+.+. ++.+ .+||+.+++..+ +..
T Consensus 246 ----------~~g~-------------~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt~------------ 289 (429)
T PRK01742 246 ----------FRGH-------------NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-LTS------------ 289 (429)
T ss_pred ----------CCCc-------------cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe-ecc------------
Confidence 0011 11244566666555432 3333 444555544311 110
Q ss_pred CCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe-CCC
Q 003171 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANG 440 (842)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs-~Dg 440 (842)
+...+..+.++|||+ |+.++ .++
T Consensus 290 -------------------------------------------------------~~~~~~~~~wSpDG~~i~f~s~~~g 314 (429)
T PRK01742 290 -------------------------------------------------------GAGNNTEPSWSPDGQSILFTSDRSG 314 (429)
T ss_pred -------------------------------------------------------CCCCcCCEEECCCCCEEEEEECCCC
Confidence 011123456889987 55444 567
Q ss_pred eEEEEcC--CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEeCCCEEEEEcCC
Q 003171 441 LLLQWDP--NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGYIFTLANH 517 (842)
Q Consensus 441 tIrlWD~--~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~~l~S~S~D 517 (842)
...+|++ .+...+.+ .+.....++++||++|+.++.++ |.+||+. |+.......+...-.+.++||++++.++.+
T Consensus 315 ~~~I~~~~~~~~~~~~l-~~~~~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 315 SPQVYRMSASGGGASLV-GGRGYSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred CceEEEEECCCCCeEEe-cCCCCCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcC
Confidence 8888876 34333333 33332234678999998887765 4559987 543221122222222356799999999999
Q ss_pred CCeeecccc
Q 003171 518 GGIRGWNVT 526 (842)
Q Consensus 518 gtIrvWd~~ 526 (842)
+++++|.+.
T Consensus 393 g~~~~l~~~ 401 (429)
T PRK01742 393 GLGKVLQLV 401 (429)
T ss_pred CCceEEEEE
Confidence 999999864
No 195
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=5.1e-08 Score=115.27 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=92.0
Q ss_pred cCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeee-eeecCCccEEEEEecCCEEEEEecCcEEEEEeCCCccccc
Q 003171 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQ-DFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGG 493 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~-~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~g~~i~~ 493 (842)
+|.+.+-++.++.||. ++|.|+|.++|+|++ +++.+. +.-+|+.+|..+.+...+|++++.|.|.++|+.+++.+.+
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~~~l~~ 252 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNGTQLEV 252 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEecccceehh
Confidence 4445555677888887 899999999999999 666655 6678999999888766699999999999999999888889
Q ss_pred cccccc-CEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 494 WVAHSS-PVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 494 l~gH~~-~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+.+|.. .|+.++. +.-.++|++.|+++|+|++..
T Consensus 253 y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 253 YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999986 5888874 344677999999999999643
No 196
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=8.6e-08 Score=99.94 Aligned_cols=259 Identities=14% Similarity=0.130 Sum_probs=152.3
Q ss_pred CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 142 EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 142 ~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
+..|..| .||.|-+||+.+...... +. .| ..||.|+++|+||+.|.|+|.|..|++||+
T Consensus 35 G~~lAvGc~nG~vvI~D~~T~~iar~-----------------ls--aH-~~pi~sl~WS~dgr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFDTFRIARM-----------------LS--AH-VRPITSLCWSRDGRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred cceeeeeccCCcEEEEEccccchhhh-----------------hh--cc-ccceeEEEecCCCCEeeeecCCceeEEEec
Confidence 3344444 599999999987543221 22 23 669999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccc-eeecCCCceeeeEEEEeeceeec
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEK-ALSLKPEERHTAALIVERSYIDL 297 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~-~l~~~~~~~~~~~l~~~~s~~~l 297 (842)
..|. +...++ -..+|+...|.|-.+ . +..-.+..--+-++..... .+....+
T Consensus 95 ~~gs--------~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d---------------- 149 (405)
T KOG1273|consen 95 LKGS--------PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD---------------- 149 (405)
T ss_pred cCCC--------ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCc----------------
Confidence 9873 222211 257899999988543 2 2222222222222221000 0000000
Q ss_pred ccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCC-ceEeeeecccCCCcccccceEEE
Q 003171 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDG-QIENRVDMSLLPDFAMEDEFKTK 375 (842)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~-~~~~~~~~s~~~~~~~~~~~~~~ 375 (842)
+.. +..-.+..++..|..+.+|+. +.+.++|+.|-+++..|.... +.
T Consensus 150 ---~dl-------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~--------------------- 198 (405)
T KOG1273|consen 150 ---GDL-------NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQA--------------------- 198 (405)
T ss_pred ---ccc-------ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechhee---------------------
Confidence 000 000112244566777888876 468999999998877765322 11
Q ss_pred EEecCCCCccceeeeEeecCcceEEecCCcEEEEeec---------Cccc------cCCCce--EEEEECCCCc-EEEE-
Q 003171 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---------GGFG------DDNRRT--EALTTSIDGM-IWTG- 436 (842)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~---------g~~~------~~~~~v--~al~~s~dg~-l~Sg- 436 (842)
+..+-+..+++..++.+.|-+.|.-.. |... .-..+. ..+.||.||. +..|
T Consensus 199 ----------IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 199 ----------IKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS 268 (405)
T ss_pred ----------eeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc
Confidence 112344445556677777777766431 1111 001111 2377899997 4333
Q ss_pred eCCCeEEEEcC-CCCeeeeeecCC-ccEEEEEecC--CEEEEEecCcEEEEEeCC
Q 003171 437 GANGLLLQWDP-NGNRLQDFQYLP-FAVQCLCTFG--SQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 437 s~DgtIrlWD~-~g~~l~~l~~H~-~~V~sls~dG--~~LasGs~DgtIrlWD~~ 487 (842)
+..+.+.+|.- .|.+++.+.|.. .....+..+. ..|++- ..|+|++|...
T Consensus 269 ~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 269 ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 34678999999 799999998866 3344554443 234443 67899999853
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=2.8e-09 Score=114.99 Aligned_cols=199 Identities=19% Similarity=0.205 Sum_probs=124.0
Q ss_pred EEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCC
Q 003171 245 LSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR 323 (842)
Q Consensus 245 ~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~ 323 (842)
..|+|+.+|. |++|+.||++|||++......+... .| ..+|+.+.+++++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~-------------------~~----------~~eV~DL~FS~dg 198 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI-------------------AH----------HAEVKDLDFSPDG 198 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH-------------------hh----------cCccccceeCCCC
Confidence 6789999976 7899999999999986533222111 11 4578899999999
Q ss_pred CEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecC
Q 003171 324 AKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA 403 (842)
Q Consensus 324 ~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~ 403 (842)
..|++.+....+|||+.+|.++....+....+ .++. ..|..+. +.
T Consensus 199 k~lasig~d~~~VW~~~~g~~~a~~t~~~k~~--------------------~~~~---------cRF~~d~------~~ 243 (398)
T KOG0771|consen 199 KFLASIGADSARVWSVNTGAALARKTPFSKDE--------------------MFSS---------CRFSVDN------AQ 243 (398)
T ss_pred cEEEEecCCceEEEEeccCchhhhcCCcccch--------------------hhhh---------ceecccC------CC
Confidence 88888775699999999997765543211100 0011 1222110 11
Q ss_pred CcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcCC-CCeeeeeecCCccEEEEE--ecCCEEEEEecCcE
Q 003171 404 DAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGI 480 (842)
Q Consensus 404 ~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~~V~sls--~dG~~LasGs~Dgt 480 (842)
..+++.+ .. .|.+.+... .+.+|+-. --..++...-.+.|.|++ .||+++|.|+.||.
T Consensus 244 -~~l~laa-------------~~-~~~~~v~~~----~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 244 -ETLRLAA-------------SQ-FPGGGVRLC----DISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred -ceEEEEE-------------ec-CCCCceeEE----EeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 1111110 00 111212111 23344442 111222222234677765 58999999999999
Q ss_pred EEEEeCCC-cc-cccccccccCEEEEE--eCCCEEEEEcCCCCeeecccc
Q 003171 481 VQVLDLEG-NL-LGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 481 IrlWD~~g-~~-i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~ 526 (842)
|-|++... ++ ...-.+|...|+.|. +|.+++++.|.|.++.+-.+.
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999873 43 445579999999998 578899999999998887653
No 198
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.01 E-value=1.5e-08 Score=104.51 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=84.0
Q ss_pred ccCCCceEEEEECCCCc--EEEEeCCCeEEEEcCCCCeeeee--ec--CCccEEEEEe---cCCEEEEEec-CcEEEEEe
Q 003171 416 GDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPNGNRLQDF--QY--LPFAVQCLCT---FGSQIWVGYM-NGIVQVLD 485 (842)
Q Consensus 416 ~~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~~g~~l~~l--~~--H~~~V~sls~---dG~~LasGs~-DgtIrlWD 485 (842)
..|.+.|..++|+.++. ++|.+.||+||++|+....-.++ +. ...+..-++. |..++|+=.. ...|.+.|
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 34556677788887665 78999999999999954322222 22 1345555654 5567776554 46899999
Q ss_pred CC--CcccccccccccCEEEEEe---CCCEEEEEcCCCCeeeccccC
Q 003171 486 LE--GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 486 ~~--g~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrvWd~~~ 527 (842)
++ ...+..|.+|.+.|++|++ .+..|.|+|.|..+-+||+..
T Consensus 273 iR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 273 IRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 87 6789999999999999985 567899999999999999864
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.00 E-value=1.2e-07 Score=104.97 Aligned_cols=242 Identities=10% Similarity=0.109 Sum_probs=135.2
Q ss_pred cCCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC-CCcEEE
Q 003171 141 TEEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR-DGRIMC 217 (842)
Q Consensus 141 ~~~~l~~~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~-DGtIrl 217 (842)
+++.||++ .++.|.+|+++....... ....+ . .+....++++|++++|++++. ++.|.+
T Consensus 45 d~~~lyv~~~~~~~i~~~~~~~~g~l~~------------~~~~~-----~-~~~p~~i~~~~~g~~l~v~~~~~~~v~v 106 (330)
T PRK11028 45 DKRHLYVGVRPEFRVLSYRIADDGALTF------------AAESP-----L-PGSPTHISTDHQGRFLFSASYNANCVSV 106 (330)
T ss_pred CCCEEEEEECCCCcEEEEEECCCCceEE------------eeeec-----C-CCCceEEEECCCCCEEEEEEcCCCeEEE
Confidence 45577775 368999999862110000 00000 1 223567999999999998875 789999
Q ss_pred EECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeecee
Q 003171 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (842)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~ 295 (842)
|++++.. ........+.++ ....+++|+|+|+ | ++...++.|++||+++... +... .......
T Consensus 107 ~~~~~~g----~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~-l~~~--~~~~~~~------- 171 (330)
T PRK11028 107 SPLDKDG----IPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH-LVAQ--EPAEVTT------- 171 (330)
T ss_pred EEECCCC----CCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc-cccc--CCCceec-------
Confidence 9997420 001122222332 3457789999998 5 4666789999999965221 1100 0000000
Q ss_pred ecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccC--CcEEEEeecCCceEeeeecccCCCcccccc
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART--RELLKVFNIDGQIENRVDMSLLPDFAMEDE 371 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~t--g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~ 371 (842)
.. ....+.+++++++..++++. +++|.+||+.. ++. .....
T Consensus 172 ------~~-------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~-~~~~~--------------------- 216 (330)
T PRK11028 172 ------VE-------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI-ECVQT--------------------- 216 (330)
T ss_pred ------CC-------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE-EEEEE---------------------
Confidence 00 11234567778888887765 46899999863 332 11100
Q ss_pred eEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe-CCCeEEEEcC-C
Q 003171 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP-N 448 (842)
Q Consensus 372 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs-~DgtIrlWD~-~ 448 (842)
+... .. .+. .......+.++|||+ ++++. .+++|.+|++ .
T Consensus 217 -----~~~~-p~------------------------------~~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 217 -----LDMM-PA------------------------------DFS-DTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred -----EecC-CC------------------------------cCC-CCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 0000 00 000 001123467889987 66664 4789999998 2
Q ss_pred -CCe---eeeeecCC-ccEEEEEecCCEEEEEec-CcEEEEEeCC
Q 003171 449 -GNR---LQDFQYLP-FAVQCLCTFGSQIWVGYM-NGIVQVLDLE 487 (842)
Q Consensus 449 -g~~---l~~l~~H~-~~V~sls~dG~~LasGs~-DgtIrlWD~~ 487 (842)
+.. ++...... -+-..+.+||++|+++.. +++|.+|+++
T Consensus 260 ~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 260 DGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 322 22222111 111245678999998775 8999999864
No 200
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.98 E-value=2.4e-09 Score=119.36 Aligned_cols=111 Identities=14% Similarity=0.229 Sum_probs=85.2
Q ss_pred cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCee-eeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 003171 141 TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK-ESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMC 217 (842)
Q Consensus 141 ~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~V~~la~dp-dg~~LaSGs~DGtIrl 217 (842)
+..+|-. +.|+.|++|-+...-... ....|-. -.+| ...|+++.|.| ....|+++++|-||++
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e-------------~~~tPe~~lt~h-~eKI~slRfHPLAadvLa~asyd~Ti~l 704 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPE-------------NEMTPEKILTIH-GEKITSLRFHPLAADVLAVASYDSTIEL 704 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCc-------------ccCCcceeeecc-cceEEEEEecchhhhHhhhhhccceeee
Confidence 3445554 568899999985321110 1111211 1233 66899999998 5589999999999999
Q ss_pred EECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcc
Q 003171 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~ 273 (842)
||+.++ .....|.||++.|.+++|||||+ ++|.+.||+|||++....+
T Consensus 705 WDl~~~--------~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 705 WDLANA--------KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred eehhhh--------hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 999997 66778999999999999999998 7899999999999987644
No 201
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=9.4e-08 Score=109.92 Aligned_cols=211 Identities=10% Similarity=0.021 Sum_probs=121.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCC--c
Q 003171 191 VSSVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGG--G 263 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~---DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dg--t 263 (842)
...+.+.+|+|||+.|+..+. +..|.+|++.++. .+.+..+.+| +.+++|||||+ |+ +.+.++ .
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~------~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~ 268 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA------VRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLN 268 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC------eEEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcE
Confidence 457899999999998886553 3468899998862 0122223444 45689999998 54 555555 4
Q ss_pred EEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--Cc--EEEEEc
Q 003171 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LS--FALWDA 339 (842)
Q Consensus 264 IrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~t--I~lWD~ 339 (842)
|.+||+++++.. .+... .........++++..|+..++ +. |.++|+
T Consensus 269 I~~~d~~tg~~~-~lt~~-----------------------------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 269 LYVMDLASGQIR-QVTDG-----------------------------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred EEEEECCCCCEE-EccCC-----------------------------CCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 888888664321 11110 001122344555555544332 22 333344
Q ss_pred cCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCC
Q 003171 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (842)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (842)
.+++... +.. ..
T Consensus 319 ~~g~~~~-lt~-------------------------------------------------------------------~~ 330 (429)
T PRK03629 319 NGGAPQR-ITW-------------------------------------------------------------------EG 330 (429)
T ss_pred CCCCeEE-eec-------------------------------------------------------------------CC
Confidence 4443211 100 00
Q ss_pred CceEEEEECCCCc-EEEEeCC---CeEEEEcCCCCeeeeeec-CCccEEEEEecCCEEEEEecCcE---EEEEeCCCccc
Q 003171 420 RRTEALTTSIDGM-IWTGGAN---GLLLQWDPNGNRLQDFQY-LPFAVQCLCTFGSQIWVGYMNGI---VQVLDLEGNLL 491 (842)
Q Consensus 420 ~~v~al~~s~dg~-l~Sgs~D---gtIrlWD~~g~~l~~l~~-H~~~V~sls~dG~~LasGs~Dgt---IrlWD~~g~~i 491 (842)
.......++|||+ |+..+.+ ..|.+||+.+...+.+.. +...--++++||++|+.++.++. +.+|+++|+..
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~ 410 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 410 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe
Confidence 0112345778886 5444432 358899994333344432 21222356789999998887664 78888988888
Q ss_pred ccccccccCEEEEEeCC
Q 003171 492 GGWVAHSSPVIKMAVGA 508 (842)
Q Consensus 492 ~~l~gH~~~V~sla~dg 508 (842)
+.+.+|.+.+...++.+
T Consensus 411 ~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 411 ARLPATDGQVKFPAWSP 427 (429)
T ss_pred EECccCCCCcCCcccCC
Confidence 88888888777665543
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.93 E-value=5.8e-08 Score=107.06 Aligned_cols=200 Identities=18% Similarity=0.214 Sum_probs=124.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCC
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPE 281 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~ 281 (842)
...++..+.||.+.+-+-.+ +-.....+|.++|.+-.++|||. |+|+++||.||+|...+...+.
T Consensus 75 ~d~~~i~s~DGkf~il~k~~---------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRSt----- 140 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSA---------RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRST----- 140 (737)
T ss_pred cceEEEEcCCceEEEecccc---------hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHH-----
Confidence 35688889999998877554 33456789999999999999998 9999999999999975421110
Q ss_pred ceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCE-EEEeCCCcEEEEEccCCcEEEEeecCCceEeeeec
Q 003171 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK-VWSAGFLSFALWDARTRELLKVFNIDGQIENRVDM 360 (842)
Q Consensus 282 ~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~-v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (842)
.... ...+.|++-+++... |+|.++ .+. ++-|.+...
T Consensus 141 -------------------l~Q~------~~~v~c~~W~p~S~~vl~c~g~-h~~---------IKpL~~n~k------- 178 (737)
T KOG1524|consen 141 -------------------VVQN------EESIRCARWAPNSNSIVFCQGG-HIS---------IKPLAANSK------- 178 (737)
T ss_pred -------------------Hhhc------CceeEEEEECCCCCceEEecCC-eEE---------Eeecccccc-------
Confidence 0000 224566665554332 222221 111 111111110
Q ss_pred ccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCC
Q 003171 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGAN 439 (842)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~D 439 (842)
+.+ +..|.+-|.++.+++... ++||++|
T Consensus 179 ---------------------------------------------~i~------WkAHDGiiL~~~W~~~s~lI~sgGED 207 (737)
T KOG1524|consen 179 ---------------------------------------------IIR------WRAHDGLVLSLSWSTQSNIIASGGED 207 (737)
T ss_pred ---------------------------------------------eeE------EeccCcEEEEeecCccccceeecCCc
Confidence 001 123444455666776655 7899999
Q ss_pred CeEEEEcCCCCeeeeeecCCccEEEEEecCC-EEEEEecCcEEEEEeCCCcccccccccccCEEEEE--eCCCEEEEEcC
Q 003171 440 GLLLQWDPNGNRLQDFQYLPFAVQCLCTFGS-QIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLAN 516 (842)
Q Consensus 440 gtIrlWD~~g~~l~~l~~H~~~V~sls~dG~-~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla--~dg~~l~S~S~ 516 (842)
-..|+||.-|..+-+-..|..+|+++++... ..+.|| -.++|+=. ...+.|..++ +||++++.|..
T Consensus 208 ~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S-~nt~R~~~----------p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 208 FRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWS-YNTARFSS----------PRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred eeEEeecccCcccccCChhccceeeeeeccccceeeee-eeeeeecC----------CCccceEEEEEcCCCceeecccc
Confidence 9999999999999888899999999987544 444444 44555211 1234555555 36666665555
Q ss_pred CCCe
Q 003171 517 HGGI 520 (842)
Q Consensus 517 DgtI 520 (842)
.|.+
T Consensus 277 ~G~v 280 (737)
T KOG1524|consen 277 TGQL 280 (737)
T ss_pred CceE
Confidence 5544
No 203
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.89 E-value=2.7e-08 Score=101.45 Aligned_cols=257 Identities=15% Similarity=0.152 Sum_probs=139.6
Q ss_pred eeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecC
Q 003171 233 EVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (842)
Q Consensus 233 ~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~ 312 (842)
....|++|.+.|+++.|..+++|++|..-|.|++|++++......+ ++++ ..
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~-------------------r~~g---------~~ 57 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLI-------------------RLFG---------RL 57 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhh-------------------hhhc---------cc
Confidence 3456789999999999999999999999999999999774321111 1010 01
Q ss_pred CEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEe
Q 003171 313 DIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF 392 (842)
Q Consensus 313 ~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~ 392 (842)
.+..+-.-+++..+.-+.|..+.+|++.-+..+..-+ -..|++.|-.. + +.... +...-..+.
T Consensus 58 ~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~S---i~~nslgFCrf---S--------l~~~~---k~~eqll~y 120 (323)
T KOG0322|consen 58 FITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHS---IVVNSLGFCRF---S--------LVKKP---KNSEQLLEY 120 (323)
T ss_pred eeeceeecCCcchhhcCCCceEEEEEccCcceEEEee---eeccccccccc---e--------eccCC---Ccchhheec
Confidence 1222333333333333446678899988766654422 11122222110 0 00000 000000011
Q ss_pred ecCc----ceEEecCCcEEEEeecCccccCCCceEEEEEC-CCC-c--EEEEeCCCeEEEEcC-CCCe----------ee
Q 003171 393 QRSR----NAIMGAADAVRRVAAKGGFGDDNRRTEALTTS-IDG-M--IWTGGANGLLLQWDP-NGNR----------LQ 453 (842)
Q Consensus 393 ~~~~----~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s-~dg-~--l~Sgs~DgtIrlWD~-~g~~----------l~ 453 (842)
+... +..-+....-.++... .-....+.+.+.... .++ + ++.|-++|.+.+||+ ++.. ..
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~dd-~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~ 199 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIADD-SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVES 199 (323)
T ss_pred CCcccchhhhhccCccceeEccCc-hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccccc
Confidence 1000 0000000000111100 000111222222211 122 2 567889999999999 5632 22
Q ss_pred eeecCCccEEEEEecC--CEEEEEecCcEEEEEeCC---Ccc-cc-cccccccCEEE--EEeCCCEEEEEcCCCCeeecc
Q 003171 454 DFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLE---GNL-LG-GWVAHSSPVIK--MAVGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 454 ~l~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~---g~~-i~-~l~gH~~~V~s--la~dg~~l~S~S~DgtIrvWd 524 (842)
....|..+|+++.++. .+=++|+.+..+..|.++ |.+ ++ ...--.-.|.. |.+|++.++|+|+|+.||++.
T Consensus 200 ~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVys 279 (323)
T KOG0322|consen 200 PNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYS 279 (323)
T ss_pred chhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEE
Confidence 3346899999997753 356788888889999875 332 22 22222334554 458999999999999999999
Q ss_pred ccCCCCCcchh
Q 003171 525 VTSPGPLDSIL 535 (842)
Q Consensus 525 ~~~~~~~d~~l 535 (842)
.++-.|+.-+.
T Consensus 280 wrtl~pLAVLk 290 (323)
T KOG0322|consen 280 WRTLNPLAVLK 290 (323)
T ss_pred eccCCchhhhh
Confidence 98877766443
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.88 E-value=1.9e-07 Score=111.83 Aligned_cols=165 Identities=18% Similarity=0.199 Sum_probs=102.0
Q ss_pred EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003171 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (842)
Q Consensus 144 ~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~ 221 (842)
.+++ |.||+||+||+.+....+. ..|. -.+++.. .+.+.++..-+.+..+|.|+.||.|++-+++
T Consensus 1062 s~FvsgS~DGtVKvW~~~k~~~~~~------s~rS------~ltys~~-~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEGG------SARS------ELTYSPE-GSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred ceEEEecCCceEEEeeehhhhcCcc------eeee------eEEEecc-CCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence 5665 5699999999976433211 0111 1223323 6789999999999999999999999999887
Q ss_pred CCccCCCCCcceeEEeccc-CCcEEEE-EEecCC-C--EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceee
Q 003171 222 ARLLDSDDGFGEVLSWQAH-RGPVLSL-CISSYG-D--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (842)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH-~~~V~sl-afs~dG-~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~ 296 (842)
.-... .....+.+....| .+.|.+| +|.... . |+-+..-+.|-.||+.......++.....
T Consensus 1129 ~~~~~-~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~------------- 1194 (1431)
T KOG1240|consen 1129 HYNVS-KRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR------------- 1194 (1431)
T ss_pred ccccc-cceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc-------------
Confidence 62100 0001111222233 3445444 454432 2 56777788899999866433333222111
Q ss_pred cccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEee
Q 003171 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFN 349 (842)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~ 349 (842)
++-+..++.++.+..+..|+. +.+.+||++=+.++....
T Consensus 1195 --------------hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1195 --------------HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred --------------ccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence 345677888888887777775 568899999888776654
No 205
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=3.6e-07 Score=105.29 Aligned_cols=73 Identities=12% Similarity=-0.001 Sum_probs=53.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCC--c
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGG--G 263 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DG---tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~Dg--t 263 (842)
..++.+.+++|||+.|+..+.++ .|.+|++.++. ...+..+.+.+.+++|+|||+ | ++.+.++ .
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---------~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---------RELVASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---------EEEeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 45788999999999999887543 69999998862 233344455566789999997 5 4666666 5
Q ss_pred EEEEeCCCc
Q 003171 264 IKIWPWEAI 272 (842)
Q Consensus 264 IrvWd~~t~ 272 (842)
|.+||+.++
T Consensus 274 Iy~~d~~~g 282 (433)
T PRK04922 274 IYVMDLGSR 282 (433)
T ss_pred EEEEECCCC
Confidence 888898764
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=1e-08 Score=113.06 Aligned_cols=130 Identities=18% Similarity=0.362 Sum_probs=107.9
Q ss_pred EEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeee-ecCCccEEEEEe----cCCE
Q 003171 399 IMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLCT----FGSQ 471 (842)
Q Consensus 399 ~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l-~~H~~~V~sls~----dG~~ 471 (842)
.+++...++++.....+.+|.++|.+|.++.||. |+|||.|-.+.+||. .-+.+..+ +||..-|-|+.+ ..+.
T Consensus 30 y~~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 30 YMGNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRI 109 (758)
T ss_pred hccccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeE
Confidence 4455556677776778999999999999999998 789999999999999 67776655 589999999865 3458
Q ss_pred EEEEecCcEEEEEeCCC-----------cccccccccccCEEEEEe--C-CCEEEEEcCCCCeeeccccCC
Q 003171 472 IWVGYMNGIVQVLDLEG-----------NLLGGWVAHSSPVIKMAV--G-AGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 472 LasGs~DgtIrlWD~~g-----------~~i~~l~gH~~~V~sla~--d-g~~l~S~S~DgtIrvWd~~~~ 528 (842)
+++|+.|.-|+|+|+.. ..++-|..|++.|..|+. + +..++|+|.||+||-.|++.|
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 88999999999999751 246788999999999884 3 467899999999999998764
No 207
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=1.3e-07 Score=99.86 Aligned_cols=96 Identities=15% Similarity=0.224 Sum_probs=74.1
Q ss_pred EEEEeCCCeEEEEcCC--CC-eeeeeecCC-ccEEEEEe--cCCEEEEEec----CcEEEEEeCC--Ccccccc-ccccc
Q 003171 433 IWTGGANGLLLQWDPN--GN-RLQDFQYLP-FAVQCLCT--FGSQIWVGYM----NGIVQVLDLE--GNLLGGW-VAHSS 499 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~~--g~-~l~~l~~H~-~~V~sls~--dG~~LasGs~----DgtIrlWD~~--g~~i~~l-~gH~~ 499 (842)
+.||+.||+||+||+. ++ ....+++|+ .+-.|+.. .+..++.|+. +-.|.+||++ .++++.+ ..|.+
T Consensus 87 v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D 166 (376)
T KOG1188|consen 87 VISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND 166 (376)
T ss_pred eEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC
Confidence 7899999999999993 33 334455666 45556655 4567888773 7789999986 3446655 68999
Q ss_pred CEEEEEe---CCCEEEEEcCCCCeeeccccCC
Q 003171 500 PVIKMAV---GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 500 ~V~sla~---dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
-|++|.+ +++.|+|||.||-|.++|+...
T Consensus 167 DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 167 DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 9999985 6789999999999999998765
No 208
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.78 E-value=1.6e-07 Score=111.21 Aligned_cols=148 Identities=21% Similarity=0.266 Sum_probs=109.1
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcccee
Q 003171 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKAL 276 (842)
Q Consensus 198 a~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l 276 (842)
..+++-=++++|+.-+.|.+|+.... +.-..+.||.+.|.++.++.||+ ++|.|+|.++|+|++++.+..
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~d--------n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~- 210 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHED--------NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL- 210 (967)
T ss_pred eccCcEEEEEeccccccEEEEecccc--------CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc-
Confidence 34555568999999999999998743 12225889999999999999998 799999999999999663210
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEe
Q 003171 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIEN 356 (842)
Q Consensus 277 ~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~ 356 (842)
.++.++
T Consensus 211 --------------------------------------~~~~fg------------------------------------ 216 (967)
T KOG0974|consen 211 --------------------------------------GCTGFG------------------------------------ 216 (967)
T ss_pred --------------------------------------Cccccc------------------------------------
Confidence 011111
Q ss_pred eeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEE
Q 003171 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG 436 (842)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sg 436 (842)
|..+|..+.+.|+ .++|+
T Consensus 217 -------------------------------------------------------------HsaRvw~~~~~~n-~i~t~ 234 (967)
T KOG0974|consen 217 -------------------------------------------------------------HSARVWACCFLPN-RIITV 234 (967)
T ss_pred -------------------------------------------------------------ccceeEEEEeccc-eeEEe
Confidence 1222223344455 78899
Q ss_pred eCCCeEEEEcCCCCeeeeeecCCc-cEEEEEe-cCC-EEEEEecCcEEEEEeCCCcc
Q 003171 437 GANGLLLQWDPNGNRLQDFQYLPF-AVQCLCT-FGS-QIWVGYMNGIVQVLDLEGNL 490 (842)
Q Consensus 437 s~DgtIrlWD~~g~~l~~l~~H~~-~V~sls~-dG~-~LasGs~DgtIrlWD~~g~~ 490 (842)
+.|.|.++|+.++..+.++.+|.. .|..+.. .+. .+++++.|++|++||+.+..
T Consensus 235 gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 235 GEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 999999999889988889988875 4776654 344 77788899999999976543
No 209
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=7.8e-07 Score=94.86 Aligned_cols=115 Identities=16% Similarity=0.235 Sum_probs=85.7
Q ss_pred eeEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeee-cCCCeEEEEEcCCCCEEEEE
Q 003171 134 FLRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 134 ~~~~l~~~~~-~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~V~~la~dpdg~~LaSG 209 (842)
|+.+|.+..+ ++++ |.|..++||++++...... ..|+.-..+ +.+.|.||+|+..++.|+||
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~--------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT--------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHHHhhcC--------------CCCceeccCccccceEEEEEccCCeeEecC
Confidence 7778887755 5555 4577999999976543211 122211111 26889999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccC---CcEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR---GPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~---~~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
..+|+|.+-|+++. +.+-..+|. +.|+.|..+|... |++.+.++.|-+||...
T Consensus 124 ~~~~~VI~HDiEt~---------qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 124 ERWGTVIKHDIETK---------QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred CCcceeEeeecccc---------eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence 99999999999984 344444554 5999999999765 78999999999999854
No 210
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=8.7e-07 Score=103.52 Aligned_cols=108 Identities=15% Similarity=0.181 Sum_probs=78.6
Q ss_pred CCCceEEEEECCCCc-EEEEeCCCeEEEEcCCC-----CeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCc
Q 003171 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDPNG-----NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGN 489 (842)
Q Consensus 418 ~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g-----~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~ 489 (842)
|...+.+.+++|.++ +++|..||.|.+|.--| .-.+.+.=|...|+++++ +|.+|+||+..|.+-+|.++..
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 445578899999998 78888999999997643 123445558889998864 8999999999999999998732
Q ss_pred ccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccc
Q 003171 490 LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 490 ~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~ 525 (842)
--+=|.--.++|..+. +|+++.+..-.|+.|.+-..
T Consensus 284 ~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 284 KKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred CcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 1222222245677665 67877766667888877653
No 211
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=98.74 E-value=1.2e-08 Score=105.47 Aligned_cols=128 Identities=24% Similarity=0.380 Sum_probs=84.4
Q ss_pred ccCCCCeeEEEEEEeCeEEEEEeecCcCCcchH-----------HHHHHHHHHHHHhcCcCCCCCccchhccCCCceeee
Q 003171 673 AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV-----------NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQM 741 (842)
Q Consensus 673 ~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~-----------~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~ 741 (842)
.++.||-.-.|++|.+..|.|||.||-...+|+ ..|.+.+..++.+|.=+
T Consensus 153 ~~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~------------------- 213 (391)
T KOG1976|consen 153 ANQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEE------------------- 213 (391)
T ss_pred hhhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhh-------------------
Confidence 368899999999999999999999996555544 45888888888876211
Q ss_pred cccCCCCCCCccCCCCCcCcccEEEEeccceeeecCCChH------------------HHHHH---------------hh
Q 003171 742 LRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYD------------------EARDF---------------IS 788 (842)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~------------------~~~~~---------------i~ 788 (842)
. ...+.+|+|||||||++..+.- .+.+. |.
T Consensus 214 ----------------~-~~~~~~fVfGdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vE 276 (391)
T KOG1976|consen 214 ----------------G-LRNDAIFVFGDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVE 276 (391)
T ss_pred ----------------c-cCceEEEEecccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEee
Confidence 0 2457999999999999952110 00011 11
Q ss_pred hcchHHHHHhhhHHHHh--------hcCCcccC-cccCCCCCCCCcccccCCCCCCcc
Q 003171 789 QRCFDWLRERDQLRAEM--------EAGNVFQG-MREADIKFPPTYKFEKHLAGLAEA 837 (842)
Q Consensus 789 ~~~~~~L~~~DQL~~~~--------~~~~~f~g-f~E~~I~F~PTYK~~~~~~~~~~Y 837 (842)
++.|+ -..||-+...- ++-..|+. +.|..|.|||||.|..+..|-.+|
T Consensus 277 kk~FD-yfnh~~f~d~~r~~~~~~dkEl~nf~~kl~E~~i~FpPsypysed~~~~E~~ 333 (391)
T KOG1976|consen 277 KKRFD-YFNHDWFFDLGRGMVKRYDKELANFAFKLKEETIFFPPSYPYSEDDSGKEEF 333 (391)
T ss_pred hhhcc-hhhhHHHHHcCchhhhhcchHHHHHHHHHhheeecCCCCCCCCcCccchHHH
Confidence 23343 22333322110 11124554 899999999999999988765555
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=2.9e-07 Score=108.60 Aligned_cols=158 Identities=17% Similarity=0.302 Sum_probs=104.4
Q ss_pred CCEEEEecC-CCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 003171 142 EEQLWAGGE-NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWK 219 (842)
Q Consensus 142 ~~~l~~~~D-~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp-dg~~LaSGs~DGtIrlWd 219 (842)
...|+++.| ..|||||...-.... .-|+. . ...|++|..+. .|++|+.|-.||.+|++|
T Consensus 1177 ~G~Ll~tGd~r~IRIWDa~~E~~~~---------------diP~~---s-~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD 1237 (1387)
T KOG1517|consen 1177 SGHLLVTGDVRSIRIWDAHKEQVVA---------------DIPYG---S-STLVTALSADLVHGNIIAAGFADGSVRVYD 1237 (1387)
T ss_pred CCeEEecCCeeEEEEEecccceeEe---------------ecccC---C-CccceeecccccCCceEEEeecCCceEEee
Confidence 556666554 599999996532211 11221 1 44677776654 469999999999999999
Q ss_pred CCCCccCCCCCcceeEEecccCCc--EEEEEEecCC--CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeecee
Q 003171 220 MNARLLDSDDGFGEVLSWQAHRGP--VLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (842)
Q Consensus 220 l~~g~~~~~~~~~~~~~l~gH~~~--V~slafs~dG--~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~ 295 (842)
..... +-..+..++.|+.. |..+.+-+.| +|+|||.||.|++||+..... .++.
T Consensus 1238 ~R~a~-----~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~---------------- 1295 (1387)
T KOG1517|consen 1238 RRMAP-----PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFL---------------- 1295 (1387)
T ss_pred cccCC-----ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccc----------------
Confidence 87642 11356778999877 9999998876 499999999999999965211 0000
Q ss_pred ecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEe
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVF 348 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l 348 (842)
++..+-.. -+..+++........++||+.+.|+||++. |+.+..+
T Consensus 1296 ~iv~~~~y-------Gs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~ 1340 (1387)
T KOG1517|consen 1296 TIVAHWEY-------GSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNII 1340 (1387)
T ss_pred eeeecccc-------CccceeeeeccCCCeeeecCcceEEEEecC-hhhhccc
Confidence 00000000 113567777777778888888889999985 4444444
No 213
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=4.6e-06 Score=96.21 Aligned_cols=73 Identities=15% Similarity=0.002 Sum_probs=55.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCc--
Q 003171 191 VSSVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGG-- 263 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~---DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~Dgt-- 263 (842)
..++.+.+|+|||+.|+..+. +..|.+||+.++. ...+..+.+.+.+.+|||||+ | ++.+.++.
T Consensus 201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~---------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ---------RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc---------EEEeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence 568999999999999888774 3579999998862 334556677888999999997 5 47777776
Q ss_pred EEEEeCCCc
Q 003171 264 IKIWPWEAI 272 (842)
Q Consensus 264 IrvWd~~t~ 272 (842)
|.+||++++
T Consensus 272 Iy~~d~~~~ 280 (435)
T PRK05137 272 IYTMDLRSG 280 (435)
T ss_pred EEEEECCCC
Confidence 555576553
No 214
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.64 E-value=3.7e-07 Score=94.43 Aligned_cols=114 Identities=16% Similarity=0.233 Sum_probs=77.5
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 003171 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~ 222 (842)
.|+|.++..+|+|.+..-....+-.+ .++..+ .+-. ..|+++..+.. +-++|.+.|-|.|..|||+++
T Consensus 114 dlLATs~D~LRlWri~~ee~~~~~~~-~L~~~k---------ns~~-~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~ 182 (364)
T KOG0290|consen 114 DLLATSSDFLRLWRIGDEESRVELQS-VLNNNK---------NSEF-CAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIET 182 (364)
T ss_pred chhhcccCeEEEEeccCcCCceehhh-hhccCc---------cccc-CCcccccccccCCcceeEeecccCeEEEEEEee
Confidence 56777778899998853111100000 010000 0011 45777766654 448999999999999999998
Q ss_pred CccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCcc
Q 003171 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~ 273 (842)
+. ......+|.+|...|..|+|...|. ++|.+.||.||++|+...+
T Consensus 183 ~~-----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 183 GV-----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred cc-----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 62 1123456899999999999999775 6899999999999996543
No 215
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.63 E-value=6.9e-06 Score=87.84 Aligned_cols=89 Identities=11% Similarity=0.194 Sum_probs=73.0
Q ss_pred CCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcE-EEEEeCC-Cccccccccc--ccCEEEEEe--CCC
Q 003171 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGI-VQVLDLE-GNLLGGWVAH--SSPVIKMAV--GAG 509 (842)
Q Consensus 439 DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~Dgt-IrlWD~~-g~~i~~l~gH--~~~V~sla~--dg~ 509 (842)
.|.|.|||+ +-+.+.++..|.++|-|+++ +|.+||++|..|| |||+.+. |+.+..|+-- .-.|++|++ |++
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ 231 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC
Confidence 578999999 77888899999999999875 7999999998775 6899986 7776666532 234678875 788
Q ss_pred EEEEEcCCCCeeeccccC
Q 003171 510 YIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 510 ~l~S~S~DgtIrvWd~~~ 527 (842)
+|...|..+||.++.+..
T Consensus 232 ~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 232 FLAASSNTETVHIFKLEK 249 (391)
T ss_pred eEEEecCCCeEEEEEecc
Confidence 999999999999998753
No 216
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.63 E-value=6.6e-06 Score=94.73 Aligned_cols=98 Identities=12% Similarity=-0.016 Sum_probs=57.8
Q ss_pred EEEECCCCc-EEEEeC-CCeEEEE--cCCCCeeeeeecCCccE--EEEEecCCEEEEEecC---cEEEEEeCCCcccccc
Q 003171 424 ALTTSIDGM-IWTGGA-NGLLLQW--DPNGNRLQDFQYLPFAV--QCLCTFGSQIWVGYMN---GIVQVLDLEGNLLGGW 494 (842)
Q Consensus 424 al~~s~dg~-l~Sgs~-DgtIrlW--D~~g~~l~~l~~H~~~V--~sls~dG~~LasGs~D---gtIrlWD~~g~~i~~l 494 (842)
...++|||+ |+..+. ++...+| |+++...+.+..+...+ .++++||++|+..+.+ ..|.+||+++...+.+
T Consensus 291 ~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L 370 (429)
T PRK03629 291 EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL 370 (429)
T ss_pred ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEe
Confidence 346788887 655554 3444444 66543444444333333 3567899988876543 4688999874333333
Q ss_pred cc-cccCEEEEEeCCCEEEEEcCCCCee
Q 003171 495 VA-HSSPVIKMAVGAGYIFTLANHGGIR 521 (842)
Q Consensus 495 ~g-H~~~V~sla~dg~~l~S~S~DgtIr 521 (842)
.. +...-.++++||++++.++.|+...
T Consensus 371 t~~~~~~~p~~SpDG~~i~~~s~~~~~~ 398 (429)
T PRK03629 371 TDTFLDETPSIAPNGTMVIYSSSQGMGS 398 (429)
T ss_pred CCCCCCCCceECCCCCEEEEEEcCCCce
Confidence 22 2222234568999999988888643
No 217
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.61 E-value=2.4e-06 Score=91.23 Aligned_cols=156 Identities=15% Similarity=0.220 Sum_probs=108.9
Q ss_pred eEEEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE-Ee-CC
Q 003171 135 LRTIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS-GH-RD 212 (842)
Q Consensus 135 ~~~l~~~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS-Gs-~D 212 (842)
+-++.-..++|...=...|.|||+.+....- +| +.+.| + ...+.++.+++++-+||- ++ .-
T Consensus 90 IL~VrmNr~RLvV~Lee~IyIydI~~MklLh-TI----------~t~~~-----n-~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 90 ILAVRMNRKRLVVCLEESIYIYDIKDMKLLH-TI----------ETTPP-----N-PKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred eEEEEEccceEEEEEcccEEEEecccceeeh-hh----------hccCC-----C-ccceEeeccCCCCceEEecCCCCC
Confidence 3344445667777656669999998765432 11 22222 1 234677777776667765 33 34
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCc-EEEEeCCCccceeecCCCceeeeEEEE
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG-IKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt-IrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
|.|.+||..+- +....+.+|.++|.+|+|+++|. |+|+|+-|| |||+.+.++++...+.....
T Consensus 153 GdV~l~d~~nl--------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~------- 217 (391)
T KOG2110|consen 153 GDVVLFDTINL--------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY------- 217 (391)
T ss_pred ceEEEEEcccc--------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-------
Confidence 78999999874 66778889999999999999998 689998886 69999988776655532211
Q ss_pred eeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCC
Q 003171 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTR 342 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg 342 (842)
-..+..+++++++..+.+++. +||.++.+.+.
T Consensus 218 --------------------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 218 --------------------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred --------------------eeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 114667888888887777664 68999887653
No 218
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.60 E-value=9.7e-08 Score=104.04 Aligned_cols=100 Identities=20% Similarity=0.292 Sum_probs=51.2
Q ss_pred EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCC-cccccccccccCEEEEEe--
Q 003171 433 IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-NLLGGWVAHSSPVIKMAV-- 506 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g-~~i~~l~gH~~~V~sla~-- 506 (842)
|++++..|-++--|+ .|+.+..+..-.+.+..++. -...|-.|...|+|.+|..+. .++..+..|.++|.+|+.
T Consensus 224 L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~ 303 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR 303 (545)
T ss_pred eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC
Confidence 344555555555555 45555554443444433332 233445555555666665552 345555555566655553
Q ss_pred CCCEEEEEcCCCCeeeccccCCCCCc
Q 003171 507 GAGYIFTLANHGGIRGWNVTSPGPLD 532 (842)
Q Consensus 507 dg~~l~S~S~DgtIrvWd~~~~~~~d 532 (842)
+|.|++|.|.|..++|||++.+..+.
T Consensus 304 ~G~YMaTtG~Dr~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 304 GGRYMATTGLDRKVKIWDLRNFYQLH 329 (545)
T ss_pred CCcEEeecccccceeEeeeccccccc
Confidence 45555555666666666655544333
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.60 E-value=6.8e-08 Score=106.83 Aligned_cols=87 Identities=22% Similarity=0.205 Sum_probs=75.8
Q ss_pred ceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-Cccccccc
Q 003171 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (842)
.+...+|+|||+ |++.|.||.+||+|- +-+++..++..-+..+|+ ++||+||++|++|.-|.||... .+.+..=.
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence 566789999998 899999999999999 556666676556677877 5799999999999999999986 78888889
Q ss_pred ccccCEEEEEeC
Q 003171 496 AHSSPVIKMAVG 507 (842)
Q Consensus 496 gH~~~V~sla~d 507 (842)
||.++|..|++|
T Consensus 372 GHkSWVs~VaFD 383 (636)
T KOG2394|consen 372 GHKSWVSVVAFD 383 (636)
T ss_pred ccccceeeEeec
Confidence 999999999988
No 220
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.58 E-value=4.8e-05 Score=85.96 Aligned_cols=306 Identities=14% Similarity=0.161 Sum_probs=158.0
Q ss_pred EEecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003171 138 IVCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIM 216 (842)
Q Consensus 138 l~~~~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIr 216 (842)
.+..++.++++. ++.|..+|.+++..... ..+. .......++ +++.++.|+.||.+.
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~-------------------~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~ 118 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETGKRLWR-------------------VDLD-ERLSGGVGA--DGGLVFVGTEKGEVI 118 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCCcEeee-------------------ecCC-CCcccceEE--cCCEEEEEcCCCEEE
Confidence 344577888754 67899999877654432 0010 000011222 467888999999999
Q ss_pred EEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceee
Q 003171 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (842)
Q Consensus 217 lWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~ 296 (842)
.+|..+| +.+-+..- .+.+.+.....++.++.++.|+.|..||.++++...+.........
T Consensus 119 ald~~tG--------~~~W~~~~-~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~---------- 179 (377)
T TIGR03300 119 ALDAEDG--------KELWRAKL-SSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT---------- 179 (377)
T ss_pred EEECCCC--------cEeeeecc-CceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee----------
Confidence 9999887 33322211 1223222222345677788899999999988765444321110000
Q ss_pred cccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEE
Q 003171 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (842)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (842)
+++ . ... +.. ++ .+..+. ++.+..+|+++|+.+-........ .......... .....
T Consensus 180 ~~~-----~-----~sp---~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~-g~~~~~~~~~--~~~~p--- 237 (377)
T TIGR03300 180 LRG-----S-----ASP---VIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPK-GRTELERLVD--VDGDP--- 237 (377)
T ss_pred ecC-----C-----CCC---EEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCC-CCCchhhhhc--cCCcc---
Confidence 000 0 000 111 12 333333 457788888888765432210000 0000000000 00000
Q ss_pred EEecCCCCccceeeeEeecCcceEEecCC-cEEEEee-cCccc--cCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCC
Q 003171 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAA-KGGFG--DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGN 450 (842)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v~~v~~-~g~~~--~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~ 450 (842)
++. +..++++..+ .++.+.. .|... .........+. .+++++.++.||.|..+|. +|+
T Consensus 238 ~~~----------------~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 238 VVD----------------GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAV-DDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred EEE----------------CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceE-eCCEEEEECCCCeEEEEECCCCc
Confidence 000 0111222211 1222221 11100 00011111222 3677888889999999999 787
Q ss_pred eeeeeecCCc-cEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEE-EEeCCCEEEEEcCCCCeeec
Q 003171 451 RLQDFQYLPF-AVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-MAVGAGYIFTLANHGGIRGW 523 (842)
Q Consensus 451 ~l~~l~~H~~-~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s-la~dg~~l~S~S~DgtIrvW 523 (842)
.+-....-.. .+.+....|.+|++++.+|.|.++|.+ |+.+..+..|...+.+ .+.-++.|+-++.||.|..+
T Consensus 301 ~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 301 ELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 6644421111 122334468899999999999999986 8888888777755443 33444568889999988654
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=5.6e-06 Score=89.06 Aligned_cols=105 Identities=15% Similarity=0.204 Sum_probs=87.7
Q ss_pred CCcEEEEeCCCeEEEEcC-CC-CeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Cccccc-ccccccCEEE
Q 003171 430 DGMIWTGGANGLLLQWDP-NG-NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGG-WVAHSSPVIK 503 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g-~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~-l~gH~~~V~s 503 (842)
..++++++.-+.||+||. .+ +.+..|.--.++|.++. ++|.+|++|..-+.+..+|+. ++++.. ++|-++.|.+
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs 295 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS 295 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcce
Confidence 345899999999999999 45 56777777778888874 689999999999999999998 566655 8999999999
Q ss_pred EEeCCC--EEEEEcCCCCeeeccccCCCCCcch
Q 003171 504 MAVGAG--YIFTLANHGGIRGWNVTSPGPLDSI 534 (842)
Q Consensus 504 la~dg~--~l~S~S~DgtIrvWd~~~~~~~d~~ 534 (842)
|-.+++ +++|+|-|..|||.|+.+..++..+
T Consensus 296 ih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 296 IHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred EEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 986655 8999999999999999886665543
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=6.3e-06 Score=94.85 Aligned_cols=71 Identities=10% Similarity=0.013 Sum_probs=53.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCCcEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DG---tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~DgtIr 265 (842)
..++.+.+|+|||+.|+..+.+. .|.+||+.++. ...+....+.+.+.+|||||+ |+ +.+.|+..+
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 265 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---------RRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQ 265 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC---------EEEeecCCCCccceEECCCCCEEEEEEccCCCce
Confidence 45788999999999998877543 59999998862 223333345567899999997 54 778899888
Q ss_pred EEeCC
Q 003171 266 IWPWE 270 (842)
Q Consensus 266 vWd~~ 270 (842)
||.++
T Consensus 266 Iy~~d 270 (427)
T PRK02889 266 IYTVN 270 (427)
T ss_pred EEEEE
Confidence 88764
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.55 E-value=8.3e-07 Score=98.44 Aligned_cols=93 Identities=13% Similarity=0.215 Sum_probs=72.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|...+|+|||++||+-|.||.+||++..+. +.+..++.--+...||+|||||+ |++|++|..|-||.+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--------eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--------ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHH--------HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 568888999999999999999999999999884 33333444568999999999999 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVE 291 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~ 291 (842)
....-.-..+.+..++..+.++
T Consensus 362 ~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 362 EERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred ccceEEEeccccccceeeEeec
Confidence 6544333445555555555443
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=1.3e-05 Score=92.47 Aligned_cols=197 Identities=13% Similarity=-0.002 Sum_probs=111.7
Q ss_pred cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee---CCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS---EGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS---~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.|.+||.++. ....+..|...|.+.+|||||+ |+..+ .+..|.+||+.+++... +...
T Consensus 183 ~l~~~d~dg~---------~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~-------- 244 (435)
T PRK05137 183 RLAIMDQDGA---------NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNF-------- 244 (435)
T ss_pred EEEEECCCCC---------CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecC--------
Confidence 6777887663 3455678888999999999998 66544 34689999997653211 1000
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEE-EeC-C--CcEEEEEccCCcEEEEeecCCceEeeeecccCCC
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-F--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~-s~s-~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (842)
...+.....++++.+|+ +.+ + ..|.+||+.++++.+ +..+.
T Consensus 245 ---------------------~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~------------- 289 (435)
T PRK05137 245 ---------------------PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSP------------- 289 (435)
T ss_pred ---------------------CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCC-------------
Confidence 00112234455555443 322 2 247777887765422 11100
Q ss_pred cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeC-CC--e
Q 003171 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NG--L 441 (842)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~-Dg--t 441 (842)
.......++|||+ |+..+. +| .
T Consensus 290 ------------------------------------------------------~~~~~~~~spDG~~i~f~s~~~g~~~ 315 (435)
T PRK05137 290 ------------------------------------------------------AIDTSPSYSPDGSQIVFESDRSGSPQ 315 (435)
T ss_pred ------------------------------------------------------CccCceeEcCCCCEEEEEECCCCCCe
Confidence 0011245677876 555442 32 5
Q ss_pred EEEEcCCCCeeeeeecCCccEE--EEEecCCEEEEEecC---cEEEEEeCCCccccccc-ccccCEEEEEeCCCEEEEEc
Q 003171 442 LLQWDPNGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMN---GIVQVLDLEGNLLGGWV-AHSSPVIKMAVGAGYIFTLA 515 (842)
Q Consensus 442 IrlWD~~g~~l~~l~~H~~~V~--sls~dG~~LasGs~D---gtIrlWD~~g~~i~~l~-gH~~~V~sla~dg~~l~S~S 515 (842)
|.+||+++...+.+..+...+. .+++||++|+..+.+ ..|.+||+++...+.+. ++...-.+.++||+.|+..+
T Consensus 316 Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 316 LYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred EEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEE
Confidence 8888986655555554333333 457899988876643 47889998754333332 22111123457888877554
Q ss_pred CC
Q 003171 516 NH 517 (842)
Q Consensus 516 ~D 517 (842)
.+
T Consensus 396 ~~ 397 (435)
T PRK05137 396 QT 397 (435)
T ss_pred cc
Confidence 43
No 225
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.55 E-value=6.9e-06 Score=93.92 Aligned_cols=73 Identities=12% Similarity=0.007 Sum_probs=54.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCC--c
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGG--G 263 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DG---tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dg--t 263 (842)
...+.+.+++|||+.|+.++.++ .|.+|++.++ + ...+..+.+.+.+++|+|||+ |+ +.+.++ .
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g--------~-~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG--------Q-REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC--------C-EEEeecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 44688889999999998877653 7999999886 2 233445666778899999997 54 666555 5
Q ss_pred EEEEeCCCc
Q 003171 264 IKIWPWEAI 272 (842)
Q Consensus 264 IrvWd~~t~ 272 (842)
|.+|++.++
T Consensus 260 i~~~d~~~~ 268 (417)
T TIGR02800 260 IYVMDLDGK 268 (417)
T ss_pred EEEEECCCC
Confidence 788888653
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.50 E-value=3.1e-07 Score=101.67 Aligned_cols=124 Identities=19% Similarity=0.277 Sum_probs=92.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-cccCCcEEEEEEecCC--C-EEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYG--D-LWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG--~-L~SgS~DgtIrv 266 (842)
++-|.||.|+.+|.+|+|||.|-.+.|||.-.. +.++.. .||++.|.|+.|-|.. + ++||+.|..|||
T Consensus 50 ~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~--------KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 50 TGCVNCLEWNADGELLASGSDDTRLIVWDPFEY--------KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred cceecceeecCCCCEEeecCCcceEEeecchhc--------ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 889999999999999999999999999998753 444444 6999999999999964 2 679999999999
Q ss_pred EeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCC-CEEEEeC-CCcEEEEEccC
Q 003171 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDART 341 (842)
Q Consensus 267 Wd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~v~s~s-~~tI~lWD~~t 341 (842)
+|+...+. ......+. .....+..+...|+-++..+.+ ..+|+++ |++|+-+|++-
T Consensus 122 fdl~~~~~----~~~d~~~~---------------~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 122 FDLDSSKE----GGMDHGME---------------ETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred Eecccccc----cccccCcc---------------chhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 99975211 00000000 0111112235668888887776 6899998 78999999864
No 227
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.50 E-value=1.1e-05 Score=84.99 Aligned_cols=236 Identities=11% Similarity=0.077 Sum_probs=156.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-CEEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd~ 269 (842)
..||+|.++++|+..+|.+-....|.|+.+.+. ...+..++++-|...|+.|.++|.+ +|+||+.|..-.||..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~-----~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA-----DLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCC-----CCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 459999999999999999999999999998774 3346778899999999999999988 5999999999999987
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l 348 (842)
..+. ....++ +.+| .+...+++-=++.+.+++.++. +.|.||-.+.
T Consensus 85 ~~~~---------~Wkptl------vLlR-----------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~------- 131 (361)
T KOG1523|consen 85 PSGG---------TWKPTL------VLLR-----------INRAATCVKWSPKENKFAVGSGARLISVCYYEQ------- 131 (361)
T ss_pred CCCC---------eeccce------eEEE-----------eccceeeEeecCcCceEEeccCccEEEEEEEec-------
Confidence 3211 011111 1111 1234455665677777777664 4555654321
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
... |.-++.-+ ......|.++.+.
T Consensus 132 --ENd-----------------------WWVsKhik-------------------------------kPirStv~sldWh 155 (361)
T KOG1523|consen 132 --END-----------------------WWVSKHIK-------------------------------KPIRSTVTSLDWH 155 (361)
T ss_pred --ccc-----------------------eehhhhhC-------------------------------Cccccceeeeecc
Confidence 111 11110000 0122446677787
Q ss_pred CCCc-EEEEeCCCeEEEEcC--C-----------------CCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeC
Q 003171 429 IDGM-IWTGGANGLLLQWDP--N-----------------GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~--~-----------------g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~ 486 (842)
|++. |+.||.|+..|++.. + |+++.++....++|..+.+ +|.+|+=.+.|.+|.+=|.
T Consensus 156 pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 156 PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 8887 678889999999853 1 2233444445678887754 6999998899999999998
Q ss_pred CCc--ccccccccccCEEEEEe-CCCEEEEEcCCCCe
Q 003171 487 EGN--LLGGWVAHSSPVIKMAV-GAGYIFTLANHGGI 520 (842)
Q Consensus 487 ~g~--~i~~l~gH~~~V~sla~-dg~~l~S~S~DgtI 520 (842)
.+. ...+...-.-+..++.+ ....++.++.|..=
T Consensus 236 ~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P 272 (361)
T KOG1523|consen 236 AGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGP 272 (361)
T ss_pred CCCchhccchhhccCCceeeEeecCCceeecCCCCCc
Confidence 743 34443333356666664 56677777777543
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.49 E-value=3.6e-07 Score=99.73 Aligned_cols=222 Identities=14% Similarity=0.161 Sum_probs=147.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccc
Q 003171 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEK 274 (842)
Q Consensus 195 ~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~ 274 (842)
+.+.++.+|+.|+.|+..|.+-..|..++ +....+. =...|.++.|-.+-+++....-+-+.|+|-.+.+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~--------~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE- 202 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTK--------KLHFEIN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE- 202 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccc--------eeeeeee-hhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE-
Confidence 45778889999999999999999999885 2322221 1567899999887777777778888999875432
Q ss_pred eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCCc
Q 003171 275 ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQ 353 (842)
Q Consensus 275 ~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~ 353 (842)
.-++.. ...+..+-+-+---.+++++. +-++.-|+.+|+++..+....
T Consensus 203 lHClk~------------------------------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~- 251 (545)
T KOG1272|consen 203 LHCLKR------------------------------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA- 251 (545)
T ss_pred Eeehhh------------------------------cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC-
Confidence 111110 112222333333334444443 456777888887643332100
Q ss_pred eEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC-CCc
Q 003171 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI-DGM 432 (842)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~-dg~ 432 (842)
+.+..+...| +..
T Consensus 252 ------------------------------------------------------------------G~~~vm~qNP~NaV 265 (545)
T KOG1272|consen 252 ------------------------------------------------------------------GRTDVMKQNPYNAV 265 (545)
T ss_pred ------------------------------------------------------------------CccchhhcCCccce
Confidence 0000111112 223
Q ss_pred EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCC-cccccccccccCEEEEEeCC
Q 003171 433 IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-NLLGGWVAHSSPVIKMAVGA 508 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g-~~i~~l~gH~~~V~sla~dg 508 (842)
+-+|..+|+|-+|.. ..+.+..+..|.++|.+|++ .|.|+++.+.|..++|||+.+ ..+.+... .-+...++.+.
T Consensus 266 ih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq 344 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ 344 (545)
T ss_pred EEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccc
Confidence 567899999999999 46788888899999999987 488999999999999999974 33333322 23456677777
Q ss_pred CEEEEEcCCCCeeecc
Q 003171 509 GYIFTLANHGGIRGWN 524 (842)
Q Consensus 509 ~~l~S~S~DgtIrvWd 524 (842)
+.++.+|.-.-|.+|.
T Consensus 345 kglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 345 KGLLALSYGDHVQIWK 360 (545)
T ss_pred ccceeeecCCeeeeeh
Confidence 7788888888899996
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=9.4e-06 Score=93.61 Aligned_cols=52 Identities=15% Similarity=-0.002 Sum_probs=38.9
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeC---CCcEEEEeCCCcc
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE---GGGIKIWPWEAIE 273 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~---DgtIrvWd~~t~~ 273 (842)
.+|.+||.++. ..+.+..|...|.+.+|+|||+ |+..+. +..|.+||+.+++
T Consensus 184 ~~l~i~D~~g~---------~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~ 239 (433)
T PRK04922 184 YALQVADSDGY---------NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ 239 (433)
T ss_pred EEEEEECCCCC---------CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC
Confidence 36888998763 3455667788999999999997 766553 3469999997654
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.43 E-value=5.5e-05 Score=85.14 Aligned_cols=295 Identities=12% Similarity=0.067 Sum_probs=146.8
Q ss_pred EEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 207 aSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
++-..+|.+.+.|..+. +.+..+..+.+.-..++|+|||+ ++.++.||.|-++|+.+.+..-+...
T Consensus 10 V~~~~~~~v~viD~~t~--------~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----- 76 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATN--------KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----- 76 (369)
T ss_dssp EEEGGGTEEEEEETTT---------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------
T ss_pred EEecCCCEEEEEECCCC--------eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----
Confidence 45556899999999885 55666655444445678999998 77888999999999977542211110
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccC
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (842)
-.....++.+++|..++.+. ..++.++|.+|.++++.+...+... ..
T Consensus 77 -------------------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~---~~--- 125 (369)
T PF02239_consen 77 -------------------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV---DG--- 125 (369)
T ss_dssp -------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T---TT---
T ss_pred -------------------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc---cc---
Confidence 11235577778888888776 4789999999999988765321100 00
Q ss_pred CCcccccceEE-EEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecC------ccccCCCceEEEEECCCCc-EEE
Q 003171 364 PDFAMEDEFKT-KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GFGDDNRRTEALTTSIDGM-IWT 435 (842)
Q Consensus 364 ~~~~~~~~~~~-~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g------~~~~~~~~v~al~~s~dg~-l~S 435 (842)
.+.|. .++....+..-. ++..+ .+.+..+.... +............++|+|+ ++.
T Consensus 126 ------~~~Rv~aIv~s~~~~~fV--v~lkd---------~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 126 ------PESRVAAIVASPGRPEFV--VNLKD---------TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp ------S---EEEEEE-SSSSEEE--EEETT---------TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred ------cCCCceeEEecCCCCEEE--EEEcc---------CCeEEEEEeccccccceeeecccccccccccCcccceeee
Confidence 00000 000000000000 00000 01111111000 0111122334577899987 444
Q ss_pred -EeCCCeEEEEcC-CCCeeeeee----cCCccEEEE-----------EecCCEEEEEecCcEEEEEeCC-Cccccccccc
Q 003171 436 -GGANGLLLQWDP-NGNRLQDFQ----YLPFAVQCL-----------CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (842)
Q Consensus 436 -gs~DgtIrlWD~-~g~~l~~l~----~H~~~V~sl-----------s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH 497 (842)
...++.|-++|. +++.+..+. .|..++..+ .-.+....+.-....+.+||.. .+.++++...
T Consensus 189 a~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~ 268 (369)
T PF02239_consen 189 AANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ 268 (369)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred cccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence 345678999999 565554443 244444433 2233333222223345567765 6778887776
Q ss_pred ccCEEE-EEeCCCEEEEE----cCCCCeeeccccCCCCCcchhh-hhhcccccccccccceeEEEEEEEeCC
Q 003171 498 SSPVIK-MAVGAGYIFTL----ANHGGIRGWNVTSPGPLDSILC-KELAGKEFLYTRMENLKILAGTWNVGQ 563 (842)
Q Consensus 498 ~~~V~s-la~dg~~l~S~----S~DgtIrvWd~~~~~~~d~~l~-~~l~~r~~~y~~~~~~~i~~~twNv~~ 563 (842)
.+++.- ..+++.+++.. ...++|.++|.++......+-. ....--+.+|++.+. .+++..|+.++
T Consensus 269 G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~-~v~vS~~~~~~ 339 (369)
T PF02239_consen 269 GGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGK-EVWVSVWDGNG 339 (369)
T ss_dssp SSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSS-EEEEEEE--TT
T ss_pred CCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCC-EEEEEEecCCC
Confidence 666432 23788888866 4568999999877533332211 001122556777766 48888888774
No 231
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=7.1e-07 Score=98.53 Aligned_cols=246 Identities=15% Similarity=0.139 Sum_probs=141.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (842)
...|.+++.-.+.+-.+|+|+|.|+|+|.+.... |......+..+.++|+.+|.++.|-.+-+ ..+|-||.|.+||.=
T Consensus 735 ~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg-D~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~ScD~giHlWDPF 812 (1034)
T KOG4190|consen 735 QEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG-DEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASCDGGIHLWDPF 812 (1034)
T ss_pred HHHhHHHHhcccccceeeccCCceEEEEEecccc-CccccceeeeEhhhccCcccceeeeeccc-eeeeccCcceeeccc
Confidence 5567776654466778899999999999986531 11122235677899999999999988654 345569999999973
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEee
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~ 349 (842)
-+...-...-.++ ++. .+.++++-.-+..-.++.++ ..|+++.|.+.++....+.
T Consensus 813 igr~Laq~~dapk----------------~~a--------~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k 868 (1034)
T KOG4190|consen 813 IGRLLAQMEDAPK----------------EGA--------GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK 868 (1034)
T ss_pred ccchhHhhhcCcc----------------cCC--------CceeEecccCcchheeeeccchhhheeeecccccceeeEE
Confidence 2211000000000 100 22345544322221222223 3689999998876543332
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
.-. . ...+..+.+++..+
T Consensus 869 Vcn--------------------------a------------------------------------~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 869 VCN--------------------------A------------------------------------PGPNALTRAIAVAD 886 (1034)
T ss_pred ecc--------------------------C------------------------------------CCCchheeEEEecc
Confidence 100 0 01122344566666
Q ss_pred CCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE-EecCCEEEEEecCcEEEE-EeCC-CcccccccccccCEEEE
Q 003171 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL-CTFGSQIWVGYMNGIVQV-LDLE-GNLLGGWVAHSSPVIKM 504 (842)
Q Consensus 430 dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl-s~dG~~LasGs~DgtIrl-WD~~-g~~i~~l~gH~~~V~sl 504 (842)
.|. ++.|-.+|+|.+-|. +|+.+..+..-......+ ++..+.|+....|.++-| |-.- |......+....+..=+
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl 966 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL 966 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh
Confidence 665 777888999999999 888776665433444444 456678888778989988 8743 54333333333322222
Q ss_pred EeCCCEEEEEcCCCCeeecc
Q 003171 505 AVGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 505 a~dg~~l~S~S~DgtIrvWd 524 (842)
..-|-.++++-+-+.++++.
T Consensus 967 qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 967 QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred hccCceeEEeccCcEEEEEe
Confidence 22233455555555555553
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.40 E-value=0.00029 Score=79.35 Aligned_cols=97 Identities=13% Similarity=0.173 Sum_probs=65.0
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeee-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~ 226 (842)
..++.|.|.|.++...... +. +..+-..++++|||++++..+.||.|-++|+.+.
T Consensus 13 ~~~~~v~viD~~t~~~~~~---------------------i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--- 68 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVAR---------------------IPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--- 68 (369)
T ss_dssp GGGTEEEEEETTT-SEEEE---------------------EE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS---
T ss_pred cCCCEEEEEECCCCeEEEE---------------------EcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc---
Confidence 4578999999876443221 11 1222234678999999999999999999999996
Q ss_pred CCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCCcEEEEeCCCccc
Q 003171 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIKIWPWEAIEK 274 (842)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~DgtIrvWd~~t~~~ 274 (842)
+.+.+.+.-. .-.++++|+||+ ++ +...++++.++|.++.+.
T Consensus 69 -----~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~ 112 (369)
T PF02239_consen 69 -----KVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP 112 (369)
T ss_dssp -----SEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--E
T ss_pred -----cEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccc
Confidence 5566665433 357899999998 44 566899999999987553
No 233
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.39 E-value=6.1e-06 Score=92.99 Aligned_cols=95 Identities=22% Similarity=0.309 Sum_probs=77.1
Q ss_pred CcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe
Q 003171 431 GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV 506 (842)
Q Consensus 431 g~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~ 506 (842)
|.|.|++.|+.+..|+. +++.++.+.+....+.++ ++||+.+++|| +.|++||.+ ++.+.+|+||.++|.++++
T Consensus 115 ~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 115 GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 45889999999999999 688888888877777765 56888998864 689999998 6789999999999999874
Q ss_pred --C-----CCEEE-EEcCCCCeeeccccC
Q 003171 507 --G-----AGYIF-TLANHGGIRGWNVTS 527 (842)
Q Consensus 507 --d-----g~~l~-S~S~DgtIrvWd~~~ 527 (842)
+ |.+++ ++..+..|.+|-+..
T Consensus 193 ~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 193 TTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEeccccccceeeeccccccceeEEEEEc
Confidence 3 55655 566777888897654
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.39 E-value=2e-06 Score=88.00 Aligned_cols=103 Identities=16% Similarity=0.268 Sum_probs=78.0
Q ss_pred CceEEEEECCCCc-EE--EEeCCCeEEEEcCCCCeeeeeecCCccEEEE--EecCCEEEEEec---CcEEEEEeCC-Ccc
Q 003171 420 RRTEALTTSIDGM-IW--TGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYM---NGIVQVLDLE-GNL 490 (842)
Q Consensus 420 ~~v~al~~s~dg~-l~--Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~---DgtIrlWD~~-g~~ 490 (842)
..|.+++++|+|. ++ +|..++.|.+||++++.+.++. ...++.+ +|+|++|++|+. .|.|++||++ .+.
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~ 137 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK 137 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence 3588999999987 43 4556789999999988887774 4566666 578999999874 4779999997 456
Q ss_pred cccccccccCEEEEE--eCCCEEEEEcC------CCCeeecccc
Q 003171 491 LGGWVAHSSPVIKMA--VGAGYIFTLAN------HGGIRGWNVT 526 (842)
Q Consensus 491 i~~l~gH~~~V~sla--~dg~~l~S~S~------DgtIrvWd~~ 526 (842)
+.+.. |.. +..++ +||+++++++. |++++||++.
T Consensus 138 i~~~~-~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 138 ISTFE-HSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eeccc-cCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 66654 333 45555 68999998764 8899999974
No 235
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.38 E-value=8.8e-06 Score=85.57 Aligned_cols=142 Identities=14% Similarity=0.172 Sum_probs=96.7
Q ss_pred ecCCCCCccccCceeEEEEecCCEEEEecCCCEEEEeCC-CCccccc--ccc-----------ccc------cCCCC---
Q 003171 121 VKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLRVWNLK-ELYDESE--SDS-----------VSV------SKSKG--- 177 (842)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~~vrvWdl~-~~~~~~~--~~~-----------~~~------~~~~~--- 177 (842)
.+..+.-|..-...++++....+.+.+--++.|.||.+. +.....+ +++ +.. |-+.|
T Consensus 83 ~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 83 LKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred ccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 334444554555567778778888888889999999874 2211100 000 000 11223
Q ss_pred ------CCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCccCCCCCcceeEEec-cc-CCcEEEEE
Q 003171 178 ------EDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR-IMCWKMNARLLDSDDGFGEVLSWQ-AH-RGPVLSLC 248 (842)
Q Consensus 178 ------~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGt-IrlWdl~~g~~~~~~~~~~~~~l~-gH-~~~V~sla 248 (842)
....+|..=..| .+.|.|++.+-+|.+|||+|..|| |||||..+| ..+..++ |- ...|.+|+
T Consensus 163 i~dL~~~~~~~p~~I~AH-~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g--------~~l~E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 163 IVDLASTKPNAPSIINAH-DSDIACVALNLQGTLVATASTKGTLIRIFDTEDG--------TLLQELRRGVDRADIYCIA 233 (346)
T ss_pred EEEhhhcCcCCceEEEcc-cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC--------cEeeeeecCCchheEEEEE
Confidence 111133322344 789999999999999999999998 899999998 4555553 32 45799999
Q ss_pred EecCCC-EEEeeCCCcEEEEeCCC
Q 003171 249 ISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 249 fs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
|||++. |+.+|+-|||.|+.+..
T Consensus 234 FSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eCCCccEEEEEcCCCeEEEEEeec
Confidence 999998 67888889999998854
No 236
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.38 E-value=9.7e-05 Score=77.91 Aligned_cols=72 Identities=17% Similarity=0.318 Sum_probs=59.1
Q ss_pred cCCCceEEEEECCCCc-EEEEeCCCe-EEEEcC-CCCeeeeeecCC--ccEEEEEe--cCCEEEEEecCcEEEEEeCCC
Q 003171 417 DDNRRTEALTTSIDGM-IWTGGANGL-LLQWDP-NGNRLQDFQYLP--FAVQCLCT--FGSQIWVGYMNGIVQVLDLEG 488 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~-l~Sgs~Dgt-IrlWD~-~g~~l~~l~~H~--~~V~sls~--dG~~LasGs~DgtIrlWD~~g 488 (842)
.|...|.+++.+-+|. +||+|..|| ||+||. +|+.++++.-.. ..|+|+++ ++.+|+++|.-|||.|+.+..
T Consensus 179 AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 179 AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 3556677888888898 789999997 799999 899999987433 35888865 688999999999999999763
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.37 E-value=5.2e-05 Score=86.69 Aligned_cols=98 Identities=18% Similarity=0.141 Sum_probs=57.6
Q ss_pred EECCCCc-EEEEeC-CC--eEEEEcCCCCeeeeeecCCccEE--EEEecCCEEEEEecCc---EEEEEeCCCcccccccc
Q 003171 426 TTSIDGM-IWTGGA-NG--LLLQWDPNGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNG---IVQVLDLEGNLLGGWVA 496 (842)
Q Consensus 426 ~~s~dg~-l~Sgs~-Dg--tIrlWD~~g~~l~~l~~H~~~V~--sls~dG~~LasGs~Dg---tIrlWD~~g~~i~~l~g 496 (842)
.++|||+ |+..+. ++ .|.+||+.+...+.+..+...+. .++++|++|+.++.++ .|.+||+.+...+.+..
T Consensus 284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC
Confidence 4566765 544443 22 57778885444444544444444 4567899998888765 88999987543333332
Q ss_pred cccCE-EEEEeCCCEEEEEcCCCCeeec
Q 003171 497 HSSPV-IKMAVGAGYIFTLANHGGIRGW 523 (842)
Q Consensus 497 H~~~V-~sla~dg~~l~S~S~DgtIrvW 523 (842)
+.... .++++|++.|+..+.++....+
T Consensus 364 ~~~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 364 TGLDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred CCCCCCceECCCCCEEEEEEeCCCcEEE
Confidence 21111 1345788888877776654433
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.37 E-value=6e-05 Score=86.81 Aligned_cols=96 Identities=18% Similarity=0.102 Sum_probs=54.5
Q ss_pred EEECCCCc-EEEEeC-CCeEEEEcC--CCCeeeee--ecCCccEEEEEecCCEEEEEecCc---EEEEEeCCCccccccc
Q 003171 425 LTTSIDGM-IWTGGA-NGLLLQWDP--NGNRLQDF--QYLPFAVQCLCTFGSQIWVGYMNG---IVQVLDLEGNLLGGWV 495 (842)
Q Consensus 425 l~~s~dg~-l~Sgs~-DgtIrlWD~--~g~~l~~l--~~H~~~V~sls~dG~~LasGs~Dg---tIrlWD~~g~~i~~l~ 495 (842)
..++|||+ |+..+. +|...+|.+ .+...+.+ .++...-.++++||++|+..+.++ .|.+||+.+...+.+.
T Consensus 289 ~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 289 PFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred eEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 45788887 554443 456666654 44333333 222122235678999998776543 6999998743223332
Q ss_pred cc-ccCEEEEEeCCCEEEEEcCCCCe
Q 003171 496 AH-SSPVIKMAVGAGYIFTLANHGGI 520 (842)
Q Consensus 496 gH-~~~V~sla~dg~~l~S~S~DgtI 520 (842)
.+ ...-.+.++||+.|+.++.++.-
T Consensus 369 ~~~~~~~p~~spdg~~l~~~~~~~g~ 394 (427)
T PRK02889 369 DTTRDESPSFAPNGRYILYATQQGGR 394 (427)
T ss_pred CCCCccCceECCCCCEEEEEEecCCC
Confidence 22 12222345789888877765543
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.36 E-value=2.2e-05 Score=83.20 Aligned_cols=281 Identities=15% Similarity=0.191 Sum_probs=139.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccC------------CcEEEEEEecCCC---E
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------GPVLSLCISSYGD---L 255 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~------------~~V~slafs~dG~---L 255 (842)
..-+.|+.|+..|.+||||..+|.|.++.-+... ...+.-...+|.|. ..|..+.+.+++. +
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~---~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLY---KGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccc---ccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 4468899999999999999999999998644321 00111223355564 3588888888875 4
Q ss_pred EEeeCCCcEEEEeCCCcccee---ecCC--CceeeeEE--EEeeceeecccceeccce-eeeecCCEEEEEEcCCCCEEE
Q 003171 256 WSGSEGGGIKIWPWEAIEKAL---SLKP--EERHTAAL--IVERSYIDLRSHLSVNGF-SSILTSDIKNLLSDHSRAKVW 327 (842)
Q Consensus 256 ~SgS~DgtIrvWd~~t~~~~l---~~~~--~~~~~~~l--~~~~s~~~l~~~~~~~~~-~~~~s~~v~~las~~~~~~v~ 327 (842)
+....|+|||+|.+....... .+.. ......++ .+.... ++--....-.+ ...+.-.+.++...++...+.
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~-~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l 180 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRH-DLEVEASPRRVYANAHTYHINSISVNSDKETFL 180 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccc-cceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence 456689999999985421111 0000 00000000 000000 00000000000 011233466777777888888
Q ss_pred EeCCCcEEEEEccC-CcEEEEeecCCc-------eEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceE
Q 003171 328 SAGFLSFALWDART-RELLKVFNIDGQ-------IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAI 399 (842)
Q Consensus 328 s~s~~tI~lWD~~t-g~~l~~l~~~~~-------~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~ 399 (842)
|+.|..|.||+++- .+........+. ++++..|++.... +-..+.+ ++ ++.+.+-...++
T Consensus 181 SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn-------~f~YSSS-KG----tIrLcDmR~~aL 248 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN-------VFVYSSS-KG----TIRLCDMRQSAL 248 (433)
T ss_pred eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc-------EEEEecC-CC----cEEEeechhhhh
Confidence 98888999999852 222111110000 0111111111000 0011111 00 111111000000
Q ss_pred EecCCcEEEEee----cCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC--CCCeeeeeecCCc------------c
Q 003171 400 MGAADAVRRVAA----KGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP--NGNRLQDFQYLPF------------A 461 (842)
Q Consensus 400 ~g~~~~v~~v~~----~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~--~g~~l~~l~~H~~------------~ 461 (842)
.-....+..-.. ..-|.+-...|..+.|++.|+.+..-.=-+|++||+ +.+.+.+++-|.. .
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 000000000000 001222334677799999998544333368999999 4677777776542 2
Q ss_pred EEE---EEec--CCEEEEEecCcEEEEEeCC
Q 003171 462 VQC---LCTF--GSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 462 V~s---ls~d--G~~LasGs~DgtIrlWD~~ 487 (842)
|.. ++.. +.++.+|+...-.+++++.
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred hhheeEEEEcCCcceEecccccceEEEecCC
Confidence 221 1334 4599999999999999975
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.36 E-value=8.5e-06 Score=83.35 Aligned_cols=113 Identities=14% Similarity=0.211 Sum_probs=78.2
Q ss_pred CCCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeC---CCcE
Q 003171 191 VSSVMCMVGDEASGVVWS--GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE---GGGI 264 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaS--Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~---DgtI 264 (842)
.++|.+++++|+|+.++. |..+..|.+||+.. +.+.++. ...++.|.|||+|+ |+.|+. .|.|
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---------~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l 127 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---------KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDL 127 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---------cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEE
Confidence 457999999999988644 55778999999974 5666663 56788999999998 566654 4679
Q ss_pred EEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-------CCcEEEE
Q 003171 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-------FLSFALW 337 (842)
Q Consensus 265 rvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-------~~tI~lW 337 (842)
.+||..+.+...... +..+..+.-+|+|..+++++ +.+++||
T Consensus 128 ~~wd~~~~~~i~~~~-------------------------------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw 176 (194)
T PF08662_consen 128 EFWDVRKKKKISTFE-------------------------------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIW 176 (194)
T ss_pred EEEECCCCEEeeccc-------------------------------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEE
Confidence 999997533221111 12234555666666665543 4589999
Q ss_pred EccCCcEEE
Q 003171 338 DARTRELLK 346 (842)
Q Consensus 338 D~~tg~~l~ 346 (842)
+.. |+++.
T Consensus 177 ~~~-G~~l~ 184 (194)
T PF08662_consen 177 SFQ-GRLLY 184 (194)
T ss_pred Eec-CeEeE
Confidence 984 65544
No 241
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.34 E-value=0.00013 Score=82.44 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=66.8
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-Ccccccccc-cccCEEEEEe
Q 003171 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA-HSSPVIKMAV 506 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g-H~~~V~sla~ 506 (842)
++.++.++.+|.+..||. +|+.+-.... ........++.+|+.++.||.|..+|.. |+.+-.... ....+.+...
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i 318 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV 318 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeecc--CCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE
Confidence 567888888999999999 7876654432 1122345678899999999999999986 765432211 1112233334
Q ss_pred CCCEEEEEcCCCCeeeccccC
Q 003171 507 GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 507 dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.+..++.++.||.|.+||..+
T Consensus 319 ~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 319 VGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred ECCEEEEEeCCCEEEEEECCC
Confidence 577899999999999998654
No 242
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.29 E-value=6.1e-05 Score=87.86 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=68.5
Q ss_pred EEEEeCCCeEEE---EcCC--C----CeeeeeecCCccEEEEEe--cCC-EEEEEecCcEEEEEeCC--Ccccccccccc
Q 003171 433 IWTGGANGLLLQ---WDPN--G----NRLQDFQYLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLE--GNLLGGWVAHS 498 (842)
Q Consensus 433 l~Sgs~DgtIrl---WD~~--g----~~l~~l~~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~--g~~i~~l~gH~ 498 (842)
++.|+.+|.|.- ++.+ . +.+..+..|.++|+++.. -+. .+.+++ |-+|+||... ..++..+.-|.
T Consensus 363 FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~ 441 (555)
T KOG1587|consen 363 FIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSP 441 (555)
T ss_pred EEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhcc
Confidence 667777776644 2232 1 234466678999999964 344 455544 9999999865 45788888999
Q ss_pred cCEEEEEeCC---CEEEEEcCCCCeeecccc
Q 003171 499 SPVIKMAVGA---GYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 499 ~~V~sla~dg---~~l~S~S~DgtIrvWd~~ 526 (842)
+.|+++++.+ ..++++..||.|-+||+.
T Consensus 442 ~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 442 DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 9999999754 468899999999999974
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=6.2e-05 Score=87.17 Aligned_cols=73 Identities=14% Similarity=-0.000 Sum_probs=48.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCCc--
Q 003171 191 VSSVMCMVGDEASGVVWSGHRD-G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGG-- 263 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~D-G--tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dgt-- 263 (842)
..++.+..|+|||+.|+..+.+ + .|.+||+.++. ...+..+.+ ...+.+|||||+ |+ +.+.++.
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~------~~~lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV------REKVTSFPG---INGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC------eEEecCCCC---CcCCeeECCCCCEEEEEEeCCCCeE
Confidence 4467889999999988876643 3 47788888762 011222333 345689999998 64 6677776
Q ss_pred EEEEeCCCc
Q 003171 264 IKIWPWEAI 272 (842)
Q Consensus 264 IrvWd~~t~ 272 (842)
|.+||++++
T Consensus 288 Iy~~dl~tg 296 (448)
T PRK04792 288 IYVVDIATK 296 (448)
T ss_pred EEEEECCCC
Confidence 666676553
No 244
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.28 E-value=2e-06 Score=63.41 Aligned_cols=37 Identities=32% Similarity=0.575 Sum_probs=34.2
Q ss_pred ceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
++..++++|.++|++|+|+|++. |+|||.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999987 78999999999997
No 245
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=0.00036 Score=74.74 Aligned_cols=114 Identities=18% Similarity=0.265 Sum_probs=77.2
Q ss_pred CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEC
Q 003171 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG-RIMCWKM 220 (842)
Q Consensus 142 ~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG-tIrlWdl 220 (842)
...|.++.-++|-+|........+..++ +-+..++.. ++.+ |..+|++|.+.+||..++++|.+. .|+|||.
T Consensus 153 aselavgCr~gIciW~~s~tln~~r~~~-~~s~~~~qv----l~~p--gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdp 225 (445)
T KOG2139|consen 153 ASELAVGCRAGICIWSDSRTLNANRNIR-MMSTHHLQV----LQDP--GHNPVTSMQWNEDGTILVTASFGSSSIMIWDP 225 (445)
T ss_pred cceeeeeecceeEEEEcCcccccccccc-cccccchhh----eeCC--CCceeeEEEEcCCCCEEeecccCcceEEEEcC
Confidence 3466678888999998754322211001 001111111 2222 357999999999999999999765 7999999
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCC
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (842)
+++. ...+.++| -+.++-+.|||||. |+.++-|++.|||+..
T Consensus 226 dtg~-------~~pL~~~g-lgg~slLkwSPdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 226 DTGQ-------KIPLIPKG-LGGFSLLKWSPDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred CCCC-------cccccccC-CCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence 9973 11222233 46788999999998 7899999999999653
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.25 E-value=0.00014 Score=83.85 Aligned_cols=73 Identities=12% Similarity=-0.007 Sum_probs=50.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCC--c
Q 003171 191 VSSVMCMVGDEASGVVWSGHRD-G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGG--G 263 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~D-G--tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dg--t 263 (842)
..++....++|||+.|+..+.+ + .|.+|++.++. ...+....+.+.+.+|||||+ |+ +.+.++ .
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~---------~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR---------REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC---------EEEccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 4578889999999988776654 2 58888998862 222333334556789999997 54 666665 5
Q ss_pred EEEEeCCCc
Q 003171 264 IKIWPWEAI 272 (842)
Q Consensus 264 IrvWd~~t~ 272 (842)
|.+||+.++
T Consensus 269 Iy~~d~~~~ 277 (430)
T PRK00178 269 IYVMDLASR 277 (430)
T ss_pred EEEEECCCC
Confidence 777788664
No 247
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.21 E-value=2e-06 Score=89.40 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=38.5
Q ss_pred eeeEEEEEEeccccCccCceeeceeecccC---cccCCCCeeEEEEEEeCeEEEEEeecCcCCcch
Q 003171 642 AGLLIAVWVRKNLKDYVGDVDVAAVPCGFG---RAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA 704 (842)
Q Consensus 642 ~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~---~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~ 704 (842)
.+..++|+.|.++...+..........+.. ....+++.+.+++. +..|+++|+|+.+....
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~~ 135 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSNDE 135 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccchh
Confidence 457788999998754433333222222221 12346677777766 99999999999985433
No 248
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.21 E-value=7.3e-06 Score=101.59 Aligned_cols=215 Identities=19% Similarity=0.252 Sum_probs=136.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-ccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
...|.|+.-.|-.-+-.||+.||.||+|....+ +.+.+|+ +-...|+.+.|+..|. ...+-.||-+-+|.
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~--------~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG--------QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCC--------CeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecc
Confidence 346888888888888999999999999998876 5566663 2237899999999986 66677899999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC----CCcEEEEEccCCcE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG----FLSFALWDARTREL 344 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s----~~tI~lWD~~tg~~ 344 (842)
... +.+.. .+.|. ....+.+++.+ .+++++ ++.+.+||.--
T Consensus 2280 ~~p--k~~~s------------------~qchn-------k~~~Df~Fi~s-----~~~tag~s~d~~n~~lwDtl~--- 2324 (2439)
T KOG1064|consen 2280 ASP--KPYTS------------------WQCHN-------KALSDFRFIGS-----LLATAGRSSDNRNVCLWDTLL--- 2324 (2439)
T ss_pred cCC--cceec------------------cccCC-------ccccceeeeeh-----hhhccccCCCCCcccchhccc---
Confidence 852 11111 01110 00123444431 122221 24677887421
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
.+.. +.+. ..|.+.++.
T Consensus 2325 -----~~~~---------------------s~v~-------------------------------------~~H~~gaT~ 2341 (2439)
T KOG1064|consen 2325 -----PPMN---------------------SLVH-------------------------------------TCHDGGATV 2341 (2439)
T ss_pred -----Cccc---------------------ceee-------------------------------------eecCCCceE
Confidence 0000 0000 123445567
Q ss_pred EEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCCC-ccccccc---ccc
Q 003171 425 LTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEG-NLLGGWV---AHS 498 (842)
Q Consensus 425 l~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~g-~~i~~l~---gH~ 498 (842)
+++.|.-+ ++||+.+|.|++||+ ..+.+++++. +. --.++.+|+..|.|+||++.+ .++.++. +|.
T Consensus 2342 l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~ 2413 (2439)
T KOG1064|consen 2342 LAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQ 2413 (2439)
T ss_pred EEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcCchhhccc
Confidence 77888877 789999999999999 4566666653 21 234899999999999999874 4555543 344
Q ss_pred cCEE----EEEe-CCCEEEEEcCCCC
Q 003171 499 SPVI----KMAV-GAGYIFTLANHGG 519 (842)
Q Consensus 499 ~~V~----sla~-dg~~l~S~S~Dgt 519 (842)
+.-. .+.. ...+|+|+++|++
T Consensus 2414 gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2414 GFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred chhhhcCceeeeccCceEEEecCCCC
Confidence 4311 1222 3567889999875
No 249
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.21 E-value=9.8e-06 Score=92.80 Aligned_cols=72 Identities=11% Similarity=0.118 Sum_probs=51.7
Q ss_pred eEEEEEcCC---CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEe
Q 003171 194 VMCMVGDEA---SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (842)
Q Consensus 194 V~~la~dpd---g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (842)
|-.+.++|. ...+++-+...+| +|++.... +. .....+-||+.+|+.+.|.|... |+++|-|..+..||
T Consensus 70 vad~qws~h~a~~~wiVsts~qkai-iwnlA~ss----~~-aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd 143 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKSS----SN-AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWD 143 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhh-hhhhhcCC----cc-ceEEEEecCccceeccccCCCCCcceeeccccccceeee
Confidence 444555553 2466666666665 89988752 11 22345679999999999998754 78999999999999
Q ss_pred CCC
Q 003171 269 WEA 271 (842)
Q Consensus 269 ~~t 271 (842)
+.+
T Consensus 144 ~rS 146 (1081)
T KOG0309|consen 144 MRS 146 (1081)
T ss_pred ccC
Confidence 965
No 250
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=0.00013 Score=81.95 Aligned_cols=283 Identities=14% Similarity=0.129 Sum_probs=154.0
Q ss_pred CCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCccCCCCCcceeEEecccC--CcEEEEEEecCC-CEEEeeCCCcEEEE
Q 003171 192 SSVMCMVGDEASGV-VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR--GPVLSLCISSYG-DLWSGSEGGGIKIW 267 (842)
Q Consensus 192 ~~V~~la~dpdg~~-LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~--~~V~slafs~dG-~L~SgS~DgtIrvW 267 (842)
..-+.+.++|||++ +|||.+--.||++|+.. ..+.+.-|. ..|.=..+|.|- +++---.|.+|-+-
T Consensus 52 ~ast~ik~s~DGqY~lAtG~YKP~ikvydlan----------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 52 TASTRIKVSPDGQYLLATGTYKPQIKVYDLAN----------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred cccceeEecCCCcEEEEecccCCceEEEEccc----------ceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 34566888999986 56788999999999976 356677774 345444444442 35555567777554
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEE-eCCCcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s-~s~~tI~lWD~~tg~~l~ 346 (842)
..-+....+.... ..+.+.......-+.+ |+...|.-.++..|.++.
T Consensus 122 ak~G~hy~~RIP~--------------------------------~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~ 169 (703)
T KOG2321|consen 122 AKYGRHYRTRIPK--------------------------------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLN 169 (703)
T ss_pred hhcCeeeeeecCc--------------------------------CCccccccCCCccEEEeecCcceEEEEcccccccc
Confidence 4322111111110 0111222111221222 233467888999999988
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
-|.......+.+.+....... .- +...+.+.||+......++.-+....++. .........|+++.
T Consensus 170 P~~~~~~~lN~v~in~~hgLl---------a~----Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s-~pg~~~~~svTal~ 235 (703)
T KOG2321|consen 170 PFETDSGELNVVSINEEHGLL---------AC----GTEDGVVEFWDPRDKSRVGTLDAASSVNS-HPGGDAAPSVTALK 235 (703)
T ss_pred ccccccccceeeeecCccceE---------Ee----cccCceEEEecchhhhhheeeecccccCC-CccccccCcceEEE
Confidence 776654433333333211110 00 01112344554321112222111111110 01112234589999
Q ss_pred ECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCc--cEEEEEe---c-CCEEEEEecCcEEEEEeCC-Cccccccccc
Q 003171 427 TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF--AVQCLCT---F-GSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (842)
Q Consensus 427 ~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~--~V~sls~---d-G~~LasGs~DgtIrlWD~~-g~~i~~l~gH 497 (842)
|+.||. ++.|+.+|.|.++|+ +.+.+. ...|.+ +|..|.. + +..|+|. ....++|||-. |+.......-
T Consensus 236 F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt 313 (703)
T KOG2321|consen 236 FRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT 313 (703)
T ss_pred ecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc
Confidence 999997 899999999999999 444432 234544 5666644 2 3466664 56799999975 7766555432
Q ss_pred ccCEEEE--EeCCCEEEEEcCCCCeeeccccCCCCCcc
Q 003171 498 SSPVIKM--AVGAGYIFTLANHGGIRGWNVTSPGPLDS 533 (842)
Q Consensus 498 ~~~V~sl--a~dg~~l~S~S~DgtIrvWd~~~~~~~d~ 533 (842)
..|+.+ .+++.++++|-.+.-+-.+=+..-+|.-.
T Consensus 314 -~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPr 350 (703)
T KOG2321|consen 314 -SDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPR 350 (703)
T ss_pred -CCcCceeeecCCceEEEecCCCcceeEEccccCCCch
Confidence 235544 46777888887776666555544444433
No 251
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=8.3e-05 Score=80.28 Aligned_cols=210 Identities=16% Similarity=0.236 Sum_probs=128.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCC--CcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEG--GGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~D--gtIrv 266 (842)
+.+|..++.. ...|.++-.+|.+.+|....+. ........|+-| .++..|--++... + ++|+.. .-+++
T Consensus 105 ~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d----~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 105 TKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGD----LHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred cccccchhhc--CCEEEEEecCCcEEEEeccCCc----cccccceeeecC-CceeeeccCCCCCceEecCchhcccceee
Confidence 6677777765 3677889999999999987541 001223334333 4566666665433 4 679998 89999
Q ss_pred EeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE-
Q 003171 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL- 344 (842)
Q Consensus 267 Wd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~- 344 (842)
||++..++.++....... ..+++-. +...+++++--++ ..++++++ +..+++||.+.+..
T Consensus 178 wdle~~~qiw~aKNvpnD---------~L~LrVP--------vW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~~qRRP 239 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVPND---------RLGLRVP--------VWITDIRFLEGSP-NYKFATITRYHQVRLYDTRHQRRP 239 (412)
T ss_pred eecccceeeeeccCCCCc---------cccceee--------eeeccceecCCCC-CceEEEEecceeEEEecCcccCcc
Confidence 999876544433211110 0111111 1122333332222 44555555 56788888875432
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
+..|. |. ...+.+
T Consensus 240 V~~fd-----------------------------------------~~--------------------------E~~is~ 252 (412)
T KOG3881|consen 240 VAQFD-----------------------------------------FL--------------------------ENPISS 252 (412)
T ss_pred eeEec-----------------------------------------cc--------------------------cCccee
Confidence 11110 00 112334
Q ss_pred EEECCCCc-EEEEeCCCeEEEEcC-CCCeeee-eecCCccEEEEEec--CCEEEEEecCcEEEEEeCCC-cccc
Q 003171 425 LTTSIDGM-IWTGGANGLLLQWDP-NGNRLQD-FQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEG-NLLG 492 (842)
Q Consensus 425 l~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~-l~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g-~~i~ 492 (842)
+...|+|. +++|..-|.+..+|+ .++.+.. |.+-++.|.+|-.+ +++|++++.|+.|||+|++. +++.
T Consensus 253 ~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 253 TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred eeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 45556666 788888899999999 5666655 78888899999664 45999999999999999985 5443
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.17 E-value=1.4e-05 Score=99.31 Aligned_cols=91 Identities=19% Similarity=0.260 Sum_probs=71.7
Q ss_pred CCCeEEEEcC--CC--CeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEeCCCE
Q 003171 438 ANGLLLQWDP--NG--NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGY 510 (842)
Q Consensus 438 ~DgtIrlWD~--~g--~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~~ 510 (842)
.++.+.+||. .+ .++. +.|...+++++. .-+.|++|+.+|.|+|||+. .+++++|++ +. -..+
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------~~-~~~~ 2382 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------LD-TREY 2382 (2439)
T ss_pred CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------hh-hhhe
Confidence 4678999998 33 3455 789999999865 45589999999999999998 567888876 22 3557
Q ss_pred EEEEcCCCCeeeccccCCCCCcchhhhh
Q 003171 511 IFTLANHGGIRGWNVTSPGPLDSILCKE 538 (842)
Q Consensus 511 l~S~S~DgtIrvWd~~~~~~~d~~l~~~ 538 (842)
+++++..|.|+||++..+.-+..+....
T Consensus 2383 f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2383 FVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred eeccCcccceEEEEccccchhhcCchhh
Confidence 8999999999999998887776655433
No 253
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.11 E-value=1.1e-05 Score=87.31 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=64.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-cccCCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
-+-++.|+++||++.|.|+.+|..||+=..... .-+.+| .||+.-|..++.-++-.|+|||.|+|||+||+
T Consensus 151 vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~--------f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 151 VSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT--------FVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhhheeeecCCCCEEEEecCCceEEEEecCcc--------cchhhhccccHhheeeeeeccCceeeecCCCCcEEEEec
Confidence 668999999999999999999999998665543 223343 69999999999998777999999999999999
Q ss_pred CCccc
Q 003171 270 EAIEK 274 (842)
Q Consensus 270 ~t~~~ 274 (842)
.+++.
T Consensus 223 ~sgk~ 227 (390)
T KOG3914|consen 223 TSGKL 227 (390)
T ss_pred ccCCc
Confidence 88654
No 254
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=0.00093 Score=75.35 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=85.8
Q ss_pred CCceEEEEECCCCc---EEEEeCCCeEEEEcCCCCeeeeeecCCccEEEE--EecCCEEEEEec---CcEEEEEeCC-Cc
Q 003171 419 NRRTEALTTSIDGM---IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYM---NGIVQVLDLE-GN 489 (842)
Q Consensus 419 ~~~v~al~~s~dg~---l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~---DgtIrlWD~~-g~ 489 (842)
.+.|.++.++++|+ ++-|-+--++.++|+.|+.+..|-. ++=+++ ++.|.+|+.++- -|.|.+||+. -+
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~e--gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPE--GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCC--CCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence 56788999999996 3456667789999999999887742 344454 567998888875 5899999987 57
Q ss_pred ccccccccccCEEEEEeCCCEEEEEcC------CCCeeecccc
Q 003171 490 LLGGWVAHSSPVIKMAVGAGYIFTLAN------HGGIRGWNVT 526 (842)
Q Consensus 490 ~i~~l~gH~~~V~sla~dg~~l~S~S~------DgtIrvWd~~ 526 (842)
++..+.+-...+..-.+||++++|+.+ |+++|||++.
T Consensus 348 ~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 348 LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 899999988888888899999998775 7999999964
No 255
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.05 E-value=0.00027 Score=74.73 Aligned_cols=99 Identities=12% Similarity=0.060 Sum_probs=67.1
Q ss_pred ceEEEEECCCCcEEEEeCC---CeEEEEcCCCCeeeeeecCCccEEEEEecC--CEEEEEecCcEEEEEeCCCccccccc
Q 003171 421 RTEALTTSIDGMIWTGGAN---GLLLQWDPNGNRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLEGNLLGGWV 495 (842)
Q Consensus 421 ~v~al~~s~dg~l~Sgs~D---gtIrlWD~~g~~l~~l~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~g~~i~~l~ 495 (842)
.+.-++||+|.+.+..-.| +.+.+||+....+...--...+|..+..|. .+|+.......+.+|-..|-......
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP 399 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP 399 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC
Confidence 3455899999985544444 479999996555544444567888887663 37888777778999999874322222
Q ss_pred ccccCEEEEEe--CCCEEEEEcCCCC
Q 003171 496 AHSSPVIKMAV--GAGYIFTLANHGG 519 (842)
Q Consensus 496 gH~~~V~sla~--dg~~l~S~S~Dgt 519 (842)
+..-.|.++.+ +|+.++-.+.|.-
T Consensus 400 ~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 400 KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCCceeeeEEecCCCcEEEEEcCCce
Confidence 22356777774 7888888887764
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.04 E-value=0.00025 Score=75.48 Aligned_cols=197 Identities=17% Similarity=0.192 Sum_probs=120.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..++.++.+.++...|+.|-..|++.-..+... -+.....+.+..|...|..+.|+..-+ ++|.+.|+.+ .|-.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed----fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc 142 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSED----FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHC 142 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhh----hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEe
Confidence 568999999999999999999999988876653 122234566789999999999998766 6789888765 4432
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEee
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~ 349 (842)
....+.+ . ++.. ...+....-++.+...+...
T Consensus 143 ~e~~~~l---------g------------~Y~~-~~~~t~~~~d~~~~fvGd~~-------------------------- 174 (404)
T KOG1409|consen 143 TESGNRL---------G------------GYNF-ETPASALQFDALYAFVGDHS-------------------------- 174 (404)
T ss_pred eccCCcc---------c------------ceEe-eccCCCCceeeEEEEecccc--------------------------
Confidence 1100000 0 0000 00000000000100000000
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
+++ ....+.+..-..+. ++.+|...+.++.+.+
T Consensus 175 --gqv--------------------------------t~lr~~~~~~~~i~-------------~~~~h~~~~~~l~Wd~ 207 (404)
T KOG1409|consen 175 --GQI--------------------------------TMLKLEQNGCQLIT-------------TFNGHTGEVTCLKWDP 207 (404)
T ss_pred --cce--------------------------------EEEEEeecCCceEE-------------EEcCcccceEEEEEcC
Confidence 000 00111111100010 1445667777888877
Q ss_pred CCc-EEEEeCCCeEEEEcCCC--CeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 430 DGM-IWTGGANGLLLQWDPNG--NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 430 dg~-l~Sgs~DgtIrlWD~~g--~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
... |.||..|..|.+||+-| ....++.+|.+.|..++. .-+++.|++.||.|.+||.+
T Consensus 208 ~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 208 GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 554 78999999999999954 345677899999998854 45799999999999999975
No 257
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.02 E-value=8.7e-05 Score=82.00 Aligned_cols=289 Identities=15% Similarity=0.134 Sum_probs=148.4
Q ss_pred eeEEEEec--CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC--CCCEEEE
Q 003171 134 FLRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp--dg~~LaS 208 (842)
|+.++.+. ++.|..| .|..|-+||-....... ..+ +.| ...|.-..|-| +.+.|++
T Consensus 144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l-------~f~-----------SGH-~~NvfQaKFiP~s~d~ti~~ 204 (559)
T KOG1334|consen 144 CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKL-------SFE-----------SGH-CNNVFQAKFIPFSGDRTIVT 204 (559)
T ss_pred ccceeeecccCceeeccCccceEEeehhhccCccc-------ccc-----------ccc-ccchhhhhccCCCCCcCcee
Confidence 34444433 4456554 47799999986543321 111 122 33343333433 4578999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecC---CCce
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLK---PEER 283 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~---~~~~ 283 (842)
.+.||.+|+=.+... ..++....+--|.++|..++..|+.- |.|++.|+.++=.|+......-.+. .+..
T Consensus 205 ~s~dgqvr~s~i~~t-----~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 205 SSRDGQVRVSEILET-----GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred ccccCceeeeeeccc-----cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence 999999998765432 11233445667999999999999864 8999999999988886532211111 1110
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccCCc------EEEEeecCCceE
Q 003171 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRE------LLKVFNIDGQIE 355 (842)
Q Consensus 284 ~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~tg~------~l~~l~~~~~~~ 355 (842)
... ....++..+... .++.++ +.-++++|.+.-. .++.|-++.-+.
T Consensus 280 ~~v--------------------------~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~ 333 (559)
T KOG1334|consen 280 ERV--------------------------GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE 333 (559)
T ss_pred cce--------------------------eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc
Confidence 000 011222333222 222222 3445566654311 123332221110
Q ss_pred ------eeeecccCCCc--ccccceEEEEEecCCCCccceeeeEe---ecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 356 ------NRVDMSLLPDF--AMEDEFKTKIVTSSKKDKAQSSFGFF---QRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 356 ------~~~~~s~~~~~--~~~~~~~~~~~s~~~~~~~~~s~~~~---~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
..+.++..+.- ....+..+-++......... ..... +-.+..+.||.+. ..|..
T Consensus 334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~-p~~~s~~~~~~k~vYKGHrN~--------------~TVKg 398 (559)
T KOG1334|consen 334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE-PDPSSPREQYVKRVYKGHRNS--------------RTVKG 398 (559)
T ss_pred cCcccceeEEecCCccceeeeecccceEEeccccccCCC-CCCCcchhhccchhhcccccc--------------cccce
Confidence 01111110000 00001111112111111100 00000 0001112232211 11222
Q ss_pred EE-ECCC-CcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEec--CCEEEEEecCcEEEEEeCC
Q 003171 425 LT-TSID-GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 425 l~-~s~d-g~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~ 487 (842)
+- |-|. ..++|||.-|.|-+|+- +++.++-|.+...-|+||-+. -..||+.+-|..||||-..
T Consensus 399 VNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 399 VNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred eeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence 22 3343 34889999999999999 689999999877789999875 4589999999999999863
No 258
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.01 E-value=0.00029 Score=78.63 Aligned_cols=125 Identities=13% Similarity=0.038 Sum_probs=85.3
Q ss_pred cceEEecCCcEEEEee-cC----ccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe-
Q 003171 396 RNAIMGAADAVRRVAA-KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT- 467 (842)
Q Consensus 396 ~~~~~g~~~~v~~v~~-~g----~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~- 467 (842)
...++...||+..+|. .| ++......|.++++.|+.. ++-+-. +.+.+=.+ ....+-..+.|.+-|.|+..
T Consensus 117 tgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~ 195 (737)
T KOG1524|consen 117 AGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWS 195 (737)
T ss_pred ceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecC
Confidence 3345556677777776 33 2334456788888888876 443332 33444444 23334456788888888864
Q ss_pred -cCCEEEEEecCcEEEEEeCCCcccccccccccCEEEEEeCCCEEEEEcCCCCee
Q 003171 468 -FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIR 521 (842)
Q Consensus 468 -dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~dg~~l~S~S~DgtIr 521 (842)
....|++|+.|-..+|||.-|+.+-+-..|.-+|++|++.+..++..+.-+++|
T Consensus 196 ~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R 250 (737)
T KOG1524|consen 196 TQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR 250 (737)
T ss_pred ccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeee
Confidence 466899999999999999888888888889999999987666665555555666
No 259
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=0.00036 Score=78.56 Aligned_cols=131 Identities=22% Similarity=0.397 Sum_probs=90.3
Q ss_pred EEecCCcEEEEee-cCccc----cCCCceEEEEECCC-CcEEEEeCCCeEEEEcC-CCCeeeeeec------CCc-----
Q 003171 399 IMGAADAVRRVAA-KGGFG----DDNRRTEALTTSID-GMIWTGGANGLLLQWDP-NGNRLQDFQY------LPF----- 460 (842)
Q Consensus 399 ~~g~~~~v~~v~~-~g~~~----~~~~~v~al~~s~d-g~l~Sgs~DgtIrlWD~-~g~~l~~l~~------H~~----- 460 (842)
+.|+...|+|++. .|.|. -+...+.++.+.+- |.|+.|+.||.|-.||. ......++.. |.+
T Consensus 150 ~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~ 229 (703)
T KOG2321|consen 150 LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAP 229 (703)
T ss_pred EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccC
Confidence 5566778999986 45544 35577888888775 45778888999999999 4555555442 333
Q ss_pred cEEEEEec--CCEEEEEecCcEEEEEeCCC-c-ccccccccccCEEEEEe---C-CCEEEEEcCCCCeeeccccCCCC
Q 003171 461 AVQCLCTF--GSQIWVGYMNGIVQVLDLEG-N-LLGGWVAHSSPVIKMAV---G-AGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 461 ~V~sls~d--G~~LasGs~DgtIrlWD~~g-~-~i~~l~gH~~~V~sla~---d-g~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
.|++++++ |-.+++|+..|.|.|+|+.. + ++..-.+-.-+|..+.+ + ...++|. .-..+||||-.+..+
T Consensus 230 svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP 306 (703)
T ss_pred cceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCc
Confidence 38888873 67999999999999999973 4 34444455567888875 2 2345554 344789999554433
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.00 E-value=0.0019 Score=82.18 Aligned_cols=258 Identities=13% Similarity=0.080 Sum_probs=137.5
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc--------------cCCcEEEEEEecCCC-EE-E
Q 003171 195 MCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA--------------HRGPVLSLCISSYGD-LW-S 257 (842)
Q Consensus 195 ~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g--------------H~~~V~slafs~dG~-L~-S 257 (842)
..+++|++ +.+.++-+..+.|++||..+. .+..+.+ +-..-..|++++++. |+ +
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---------~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa 641 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---------FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA 641 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC---------EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE
Confidence 35788875 557777778889999998763 2222211 112247899999876 55 4
Q ss_pred eeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe--CCCcEE
Q 003171 258 GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA--GFLSFA 335 (842)
Q Consensus 258 gS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~--s~~tI~ 335 (842)
-.....|+++|+.++.- .++...... ..+..+. ....... -..-..+++++.+..++.+ ....|+
T Consensus 642 Dt~n~~Ir~id~~~~~V-~tlag~G~~---------g~~~~gg-~~~~~~~--ln~P~gVa~dp~~g~LyVad~~~~~I~ 708 (1057)
T PLN02919 642 DTENHALREIDFVNETV-RTLAGNGTK---------GSDYQGG-KKGTSQV--LNSPWDVCFEPVNEKVYIAMAGQHQIW 708 (1057)
T ss_pred eCCCceEEEEecCCCEE-EEEeccCcc---------cCCCCCC-hhhhHhh--cCCCeEEEEecCCCeEEEEECCCCeEE
Confidence 44567899999865321 111000000 0000000 0000000 0112346666644444443 246799
Q ss_pred EEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCcc
Q 003171 336 LWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF 415 (842)
Q Consensus 336 lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~ 415 (842)
+||..++.. .++.+++.... ..+. . + .
T Consensus 709 v~d~~~g~v-~~~~G~G~~~~--------------------~~g~----~---------------~-------------~ 735 (1057)
T PLN02919 709 EYNISDGVT-RVFSGDGYERN--------------------LNGS----S---------------G-------------T 735 (1057)
T ss_pred EEECCCCeE-EEEecCCcccc--------------------CCCC----c---------------c-------------c
Confidence 999988764 34433221100 0000 0 0 0
Q ss_pred ccCCCceEEEEECCCCc-EE-EEeCCCeEEEEcC-CCCeeeeeec--------------CC--------ccEEEE--Eec
Q 003171 416 GDDNRRTEALTTSIDGM-IW-TGGANGLLLQWDP-NGNRLQDFQY--------------LP--------FAVQCL--CTF 468 (842)
Q Consensus 416 ~~~~~~v~al~~s~dg~-l~-Sgs~DgtIrlWD~-~g~~l~~l~~--------------H~--------~~V~sl--s~d 468 (842)
.........++++|+|. |+ +-+.++.|++||+ ++.. ..+.+ +. ..-..+ .++
T Consensus 736 ~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d 814 (1057)
T PLN02919 736 STSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD 814 (1057)
T ss_pred cccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCC
Confidence 00011234578888876 65 4456789999998 4432 11110 00 011233 456
Q ss_pred CCEEEEEecCcEEEEEeCCCcccccccc--------------cccCEEEEE--eCCCEEEEEcCCCCeeeccccCC
Q 003171 469 GSQIWVGYMNGIVQVLDLEGNLLGGWVA--------------HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 469 G~~LasGs~DgtIrlWD~~g~~i~~l~g--------------H~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
|...++-+.+++|++||.++..+.++.+ +-.....|+ .+|+.+++-+.++.||+||+.+.
T Consensus 815 G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 815 GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 7766666779999999987544333322 122345555 57888888889999999998653
No 261
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.99 E-value=0.0031 Score=71.81 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=62.7
Q ss_pred CCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCc-cEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEE-E
Q 003171 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPF-AVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-M 504 (842)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~-~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s-l 504 (842)
.+++++.++.+|.|...|. +|+.+=....-.. ...+....+.+|+.++.||.|.+.|.+ |+.+....-+...+.+ .
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P 372 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEP 372 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCC
Confidence 3567888888999999999 6765322211011 112223357788999999999999986 7776555433333433 2
Q ss_pred EeCCCEEEEEcCCCCeeecc
Q 003171 505 AVGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 505 a~dg~~l~S~S~DgtIrvWd 524 (842)
...++.|+-++.||.|..++
T Consensus 373 ~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 373 VVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred EEECCEEEEEeCCceEEEEe
Confidence 33455788889999887654
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.95 E-value=0.0015 Score=75.26 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=49.9
Q ss_pred EEECCCCc-EEEEe-CCC--eEEEEcC-CCCeeee-eecCCccEEEEEecCCEEEEEec-Cc--EEEEEeCCCccccccc
Q 003171 425 LTTSIDGM-IWTGG-ANG--LLLQWDP-NGNRLQD-FQYLPFAVQCLCTFGSQIWVGYM-NG--IVQVLDLEGNLLGGWV 495 (842)
Q Consensus 425 l~~s~dg~-l~Sgs-~Dg--tIrlWD~-~g~~l~~-l~~H~~~V~sls~dG~~LasGs~-Dg--tIrlWD~~g~~i~~l~ 495 (842)
..++|||. |+..+ .++ .|.++|+ .|+..+. +.++.....++++||++|+..+. ++ .|.+||+.+...+.+.
T Consensus 292 ~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt 371 (430)
T PRK00178 292 PFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT 371 (430)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc
Confidence 34667776 54433 233 5777788 4543221 22322333456789998887664 33 5888998743222222
Q ss_pred -ccccCEEEEEeCCCEEEEEcCC
Q 003171 496 -AHSSPVIKMAVGAGYIFTLANH 517 (842)
Q Consensus 496 -gH~~~V~sla~dg~~l~S~S~D 517 (842)
...+.-.++++||+.++-.+.+
T Consensus 372 ~~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 372 DTSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CCCCCCCceECCCCCEEEEEEec
Confidence 1111112456788887755543
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.00026 Score=80.24 Aligned_cols=121 Identities=11% Similarity=0.109 Sum_probs=87.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe--cccCCcEEEEEEecCC-CEEEeeCCCcEEEEeCCCccceeec
Q 003171 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSL 278 (842)
Q Consensus 202 dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd~~t~~~~l~~ 278 (842)
|-.+|+-|...|.|-+++...| +....+ -.|.+.|+++..+.+- -|.|++.|+.+-+|+.....- ++.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g--------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-~~~ 139 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGG--------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-IRI 139 (541)
T ss_pred CceEEEeecCCccEEEEEecCC--------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-eee
Confidence 3457999999999999999887 333334 4799999999877654 489999999999999855221 110
Q ss_pred CCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeee
Q 003171 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRV 358 (842)
Q Consensus 279 ~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~ 358 (842)
++. ....+..++.++++..+.+++ +.|++||+++++.+.+|.+|+..+..+
T Consensus 140 ------------------~~~----------~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~kevv~~ftgh~s~v~t~ 190 (541)
T KOG4547|consen 140 ------------------WKE----------QKPLVSSLCISPDGKILLTAS-RQIKVLDIETKEVVITFTGHGSPVRTL 190 (541)
T ss_pred ------------------ecc----------CCCccceEEEcCCCCEEEecc-ceEEEEEccCceEEEEecCCCcceEEE
Confidence 000 123344566666666666554 789999999999999999998765544
Q ss_pred ec
Q 003171 359 DM 360 (842)
Q Consensus 359 ~~ 360 (842)
.+
T Consensus 191 ~f 192 (541)
T KOG4547|consen 191 SF 192 (541)
T ss_pred EE
Confidence 43
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.95 E-value=0.0045 Score=78.78 Aligned_cols=275 Identities=13% Similarity=0.118 Sum_probs=139.2
Q ss_pred EEEec--CCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe-C
Q 003171 137 TIVCT--EEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH-R 211 (842)
Q Consensus 137 ~l~~~--~~~l~~~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs-~ 211 (842)
-++.+ ++.+|++ ..+.|++||......... +..+..|-.+ .++.. .. -+.-..++++++++.|+.+. .
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~i----g~~g~~G~~d-G~~~~-a~-f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQI----GSTGEEGLRD-GSFED-AT-FNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEE----ccCCCcCCCC-Cchhc-cc-cCCCcEEEEeCCCCEEEEEeCC
Confidence 34444 5678874 467899999854321110 0001111000 01100 00 12346789999888766655 4
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecc--c---------------CCcEEEEEEec-CCCE-EEeeCCCcEEEEeCCCc
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQA--H---------------RGPVLSLCISS-YGDL-WSGSEGGGIKIWPWEAI 272 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~g--H---------------~~~V~slafs~-dG~L-~SgS~DgtIrvWd~~t~ 272 (842)
.+.|+++|..++ .+.++.| . -+.-..|+|+| +|.| ++.+.++.|++||..++
T Consensus 645 n~~Ir~id~~~~---------~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g 715 (1057)
T PLN02919 645 NHALREIDFVNE---------TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG 715 (1057)
T ss_pred CceEEEEecCCC---------EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC
Confidence 567999998774 2333311 0 01225799999 5665 57778899999998654
Q ss_pred cceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeec
Q 003171 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 273 ~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~ 350 (842)
... .+..... .. ...+. ...... -.....++.++++..|+.+. .+.|++||+.++.......+
T Consensus 716 ~v~-~~~G~G~-~~---------~~~g~--~~~~~~--~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg 780 (1057)
T PLN02919 716 VTR-VFSGDGY-ER---------NLNGS--SGTSTS--FAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG 780 (1057)
T ss_pred eEE-EEecCCc-cc---------cCCCC--cccccc--ccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence 211 1111000 00 00000 000000 01233466777776555544 36899999988764221111
Q ss_pred CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC
Q 003171 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (842)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d 430 (842)
.... +. ... .| |..++... ...+ .....++++++
T Consensus 781 ~~~~------~~-~l~-----------------------~f---------G~~dG~g~---~~~l----~~P~Gvavd~d 814 (1057)
T PLN02919 781 DPTF------SD-NLF-----------------------KF---------GDHDGVGS---EVLL----QHPLGVLCAKD 814 (1057)
T ss_pred cccc------Cc-ccc-----------------------cc---------cCCCCchh---hhhc----cCCceeeEeCC
Confidence 1000 00 000 00 00000000 0001 11236788899
Q ss_pred CcEE-EEeCCCeEEEEcCCCCeeeeeecCC--------------ccEEEE--EecCCEEEEEecCcEEEEEeCCC
Q 003171 431 GMIW-TGGANGLLLQWDPNGNRLQDFQYLP--------------FAVQCL--CTFGSQIWVGYMNGIVQVLDLEG 488 (842)
Q Consensus 431 g~l~-Sgs~DgtIrlWD~~g~~l~~l~~H~--------------~~V~sl--s~dG~~LasGs~DgtIrlWD~~g 488 (842)
|.++ +-+.++.|++||.++..+.++.+.. .....+ .++|+.+++-+.+++|++||++.
T Consensus 815 G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 815 GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 9864 5557889999999654444443311 123344 45687666767899999999874
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.89 E-value=0.002 Score=74.65 Aligned_cols=93 Identities=11% Similarity=0.045 Sum_probs=48.1
Q ss_pred EEECCCCc-EEEEe-CCC--eEEEEcCCCCeeeee--ecCCccEEEEEecCCEEEEEec-Cc--EEEEEeCCCccccccc
Q 003171 425 LTTSIDGM-IWTGG-ANG--LLLQWDPNGNRLQDF--QYLPFAVQCLCTFGSQIWVGYM-NG--IVQVLDLEGNLLGGWV 495 (842)
Q Consensus 425 l~~s~dg~-l~Sgs-~Dg--tIrlWD~~g~~l~~l--~~H~~~V~sls~dG~~LasGs~-Dg--tIrlWD~~g~~i~~l~ 495 (842)
..++|||+ |+..+ .++ .|.++|+.+...+.+ .++...-.++++||++|+..+. ++ .|.++|+.+...+.+.
T Consensus 311 p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 311 PSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT 390 (448)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc
Confidence 45677776 44333 233 466667743333333 3322222356789998877654 44 4555687643323332
Q ss_pred cc-ccCEEEEEeCCCEEEEEcCC
Q 003171 496 AH-SSPVIKMAVGAGYIFTLANH 517 (842)
Q Consensus 496 gH-~~~V~sla~dg~~l~S~S~D 517 (842)
.. .+.--++++||+.++..+.+
T Consensus 391 ~~~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 391 STRLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred CCCCCCCceECCCCCEEEEEEec
Confidence 22 11112456788887755543
No 266
>PRK11756 exonuclease III; Provisional
Probab=97.89 E-value=4.3e-05 Score=82.27 Aligned_cols=127 Identities=15% Similarity=0.196 Sum_probs=69.9
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCCceE
Q 003171 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634 (842)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~~y~ 634 (842)
-+.|||+++.+.....+.+||.. .+|||+ +|||+...... . . .+.+ +.+ +..|.
T Consensus 2 ri~T~Nv~g~~~~~~~i~~~i~~--~~pDIi--~LQE~~~~~~~----------------~-~--~~~~-~~~--gy~~~ 55 (268)
T PRK11756 2 KFVSFNINGLRARPHQLEAIIEK--HQPDVI--GLQETKVHDEM----------------F-P--LEEV-EAL--GYHVF 55 (268)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHh--cCCCEE--EEEeccccccc----------------C-C--HHHH-Hhc--CCEEE
Confidence 46799999765544667888875 457775 59998532110 0 0 0111 122 22222
Q ss_pred EEeeeeceeeEEEEEEeccccCccCceeeceeecccCc--ccCCCCeeEEEEEEeCeEEEEEeecCcCCc-----chHHH
Q 003171 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR--AIGNKGAVGLRVRVYDRIMCFVNCHFAAHL-----EAVNR 707 (842)
Q Consensus 635 ~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~--~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~-----~~~~~ 707 (842)
.-+...-.| .+|+.|..+. .+. .++.+ .-...+.+.+++...+..+.|+|+|++.+. ++.+.
T Consensus 56 ~~~~~~~~G--vailSr~p~~----~~~-----~~~~~~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~ 124 (268)
T PRK11756 56 YHGQKGHYG--VALLSKQTPI----AVR-----KGFPTDDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPA 124 (268)
T ss_pred EeCCCCCCE--EEEEECCChH----HeE-----ECCCCccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHH
Confidence 222233344 4567887653 121 12211 112457888888876556999999997653 23344
Q ss_pred HHHHHHHHHHh
Q 003171 708 RNADFDHVYRT 718 (842)
Q Consensus 708 Rn~~~~~I~~~ 718 (842)
|.+.++.+...
T Consensus 125 r~~~~~~l~~~ 135 (268)
T PRK11756 125 KRQFYQDLQNY 135 (268)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 267
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.87 E-value=0.00067 Score=71.76 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=83.6
Q ss_pred cCCCceEEEEECCCCc-EEEEeCCCeEEEEcCCCCe-----eeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeC--
Q 003171 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNR-----LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL-- 486 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~-----l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~-- 486 (842)
++++...++.++|.+. +++||.-+.|-+|=.+++. -++-+.+.+.|+|++- .+-.|++|+.|+..||+..
T Consensus 98 RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayI 177 (361)
T KOG1523|consen 98 RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYI 177 (361)
T ss_pred EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEee
Confidence 3445556778888776 8999999999999875431 1222456788999974 5669999999999998861
Q ss_pred ---C--------------CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCC
Q 003171 487 ---E--------------GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 487 ---~--------------g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
+ |+++..+....++|..+.+ +|..|++.++|.+|.+=|...+.
T Consensus 178 K~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 178 KGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred eccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 1 1245566566788998875 69999999999999998866554
No 268
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=0.0024 Score=68.67 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc-CCcEEEEEEecCCC--EEEeeCCCcEEEEeCC
Q 003171 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGD--LWSGSEGGGIKIWPWE 270 (842)
Q Consensus 194 V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~--L~SgS~DgtIrvWd~~ 270 (842)
+.-+++++----++++..|-+||+++-.. .+...++.- +..|++|+|-|.+. |+.|.. +.|.+|..+
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~kss---------t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s 170 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSS---------TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDS 170 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCC---------CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcC
Confidence 55577777555678899999999998665 233334332 56899999999874 776765 469999875
Q ss_pred Cccceeec-CC-CceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEccCCcEE
Q 003171 271 AIEKALSL-KP-EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELL 345 (842)
Q Consensus 271 t~~~~l~~-~~-~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~~tg~~l 345 (842)
.....-.. .. ...+... ++.. .+..|.++.-.+++..+.+++. ..|.|||..+|..+
T Consensus 171 ~tln~~r~~~~~s~~~~qv---------l~~p---------gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~ 231 (445)
T KOG2139|consen 171 RTLNANRNIRMMSTHHLQV---------LQDP---------GHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI 231 (445)
T ss_pred cccccccccccccccchhh---------eeCC---------CCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc
Confidence 42111000 00 0000000 0000 1345788888888888888874 57999999998763
No 269
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.83 E-value=4.1e-05 Score=56.31 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=27.0
Q ss_pred CCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEe
Q 003171 449 GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 449 g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (842)
|++++++.+|..+|++++. ++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3567777777777777753 566777777777777776
No 270
>PRK05421 hypothetical protein; Provisional
Probab=97.83 E-value=9.6e-05 Score=79.37 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=35.4
Q ss_pred CCCeeEEEEEE-eCeEEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 676 NKGAVGLRVRV-YDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 676 nKG~v~i~~~i-~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
-||++.+.+.+ .+..+.++|+||.+.....+.|.+++..|.+.+
T Consensus 134 ~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~~~~r~~q~~~l~~~~ 178 (263)
T PRK05421 134 PKSALITEYPLPNGRTLLVVNIHAINFSLGVDVYSKQLEPIGDQI 178 (263)
T ss_pred cceeEEEEEEeCCCCEEEEEEECccccCcChHHHHHHHHHHHHHH
Confidence 48999999998 567899999999876444577888988887754
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.81 E-value=0.037 Score=61.64 Aligned_cols=105 Identities=6% Similarity=-0.043 Sum_probs=64.8
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-Eee---------CCCcEEEEeCCCccceeecCCC
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGS---------EGGGIKIWPWEAIEKALSLKPE 281 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS---------~DgtIrvWd~~t~~~~l~~~~~ 281 (842)
++|-+-|.++. +.+.++..=..+-- + +||||+ |+ +.+ .+..|.+||..+.+..-.+...
T Consensus 27 ~~v~ViD~~~~--------~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGEAG--------RVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEECCCC--------EEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence 88999998885 33444432122222 4 999998 54 555 6899999999886543222111
Q ss_pred ce-eeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC---CCcEEEEEccCCcEEEEeec
Q 003171 282 ER-HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 282 ~~-~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s---~~tI~lWD~~tg~~l~~l~~ 350 (842)
+. .... -.....++.+++|..++... +..+.+.|+.+++.+.....
T Consensus 97 ~~p~~~~-----------------------~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 97 EGPRFLV-----------------------GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred CCchhhc-----------------------cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 10 0000 01223456677777777654 46899999999999887654
No 272
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.78 E-value=0.028 Score=62.88 Aligned_cols=208 Identities=13% Similarity=0.188 Sum_probs=114.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCccCCCCCcceeEEeccc-----------CCcEEEEEEecCCC-EEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHR-DGRIMCWKMNARLLDSDDGFGEVLSWQAH-----------RGPVLSLCISSYGD-LWS 257 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~-DGtIrlWdl~~g~~~~~~~~~~~~~l~gH-----------~~~V~slafs~dG~-L~S 257 (842)
......++++|++++|+++.+ +|+|-++++.... .+........| .....++.|+|||+ ++.
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g-----~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG-----SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-----EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCc-----ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 344567999999999999986 7899999987621 01111111111 23468899999998 554
Q ss_pred e-eCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcE
Q 003171 258 G-SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSF 334 (842)
Q Consensus 258 g-S~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI 334 (842)
. -....|.+++++.....+.. ...+ .+ . .-..-+.+++++++..++... ..+|
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~------~~~~-------~~-----~------~G~GPRh~~f~pdg~~~Yv~~e~s~~v 216 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTP------VDSI-------KV-----P------PGSGPRHLAFSPDGKYAYVVNELSNTV 216 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEE------EEEE-------EC-----S------TTSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred EecCCCEEEEEEEeCCCceEEE------eecc-------cc-----c------cCCCCcEEEEcCCcCEEEEecCCCCcE
Confidence 3 33457899988653321211 0000 00 0 012346677888777776654 3567
Q ss_pred EEEEcc--CCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec
Q 003171 335 ALWDAR--TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK 412 (842)
Q Consensus 335 ~lWD~~--tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~ 412 (842)
.++++. +|.+ +... .+... +.
T Consensus 217 ~v~~~~~~~g~~-~~~~--------------------------~~~~~------------~~------------------ 239 (345)
T PF10282_consen 217 SVFDYDPSDGSL-TEIQ--------------------------TISTL------------PE------------------ 239 (345)
T ss_dssp EEEEEETTTTEE-EEEE--------------------------EEESC------------ET------------------
T ss_pred EEEeecccCCce-eEEE--------------------------Eeeec------------cc------------------
Confidence 777665 3422 1110 00000 00
Q ss_pred CccccCCCceEEEEECCCCc-EEE-EeCCCeEEEEcCC---CC--eeeeeecCCccEEEE--EecCCEEEEEe-cCcEEE
Q 003171 413 GGFGDDNRRTEALTTSIDGM-IWT-GGANGLLLQWDPN---GN--RLQDFQYLPFAVQCL--CTFGSQIWVGY-MNGIVQ 482 (842)
Q Consensus 413 g~~~~~~~~v~al~~s~dg~-l~S-gs~DgtIrlWD~~---g~--~l~~l~~H~~~V~sl--s~dG~~LasGs-~DgtIr 482 (842)
.+. .......++++|||+ |++ .-.+++|-+++++ |+ .++.+......-+.+ +++|++|+++. .+++|.
T Consensus 240 -~~~-~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 240 -GFT-GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp -TSC-SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred -ccc-ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence 000 011345688999998 544 3356789999982 32 233333333334555 55899999887 478999
Q ss_pred EEeC
Q 003171 483 VLDL 486 (842)
Q Consensus 483 lWD~ 486 (842)
+|++
T Consensus 318 vf~~ 321 (345)
T PF10282_consen 318 VFDI 321 (345)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9976
No 273
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.00013 Score=81.12 Aligned_cols=226 Identities=14% Similarity=0.094 Sum_probs=136.7
Q ss_pred EEEEecCCCEEEEeCCCC-ccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003171 144 QLWAGGENGLRVWNLKEL-YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~ 222 (842)
-+-++.|.+|++|.++.- ...+ ..+..|++..| ..+|..+.|-.+.+.++| -||-|.+||.--
T Consensus 750 FiSASkDKTVKLWSik~EgD~~~-------------tsaCQfTY~aH-kk~i~~igfL~~lr~i~S--cD~giHlWDPFi 813 (1034)
T KOG4190|consen 750 FISASKDKTVKLWSIKPEGDEIG-------------TSACQFTYQAH-KKPIHDIGFLADLRSIAS--CDGGIHLWDPFI 813 (1034)
T ss_pred eeeccCCceEEEEEeccccCccc-------------cceeeeEhhhc-cCcccceeeeeccceeee--ccCcceeecccc
Confidence 333477999999998531 1111 22345777666 889999998888888865 599999999765
Q ss_pred CccCCCCCcceeE--EecccCCcEEEEEEecC--CCE--EEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceee
Q 003171 223 RLLDSDDGFGEVL--SWQAHRGPVLSLCISSY--GDL--WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (842)
Q Consensus 223 g~~~~~~~~~~~~--~l~gH~~~V~slafs~d--G~L--~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~ 296 (842)
| ..+. .+....+++.-+.--++ ..| +-++...|||+.|....+-...+
T Consensus 814 g--------r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~------------------ 867 (1034)
T KOG4190|consen 814 G--------RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCEL------------------ 867 (1034)
T ss_pred c--------chhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeE------------------
Confidence 4 2221 12222233333333333 333 34588999999998664322111
Q ss_pred cccceecccee--eeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceE
Q 003171 297 LRSHLSVNGFS--SILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (842)
Q Consensus 297 l~~~~~~~~~~--~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (842)
.+| +.|+.-+++++..+.|.+++.+- .++|.+.|+++|+++..+.+-. .
T Consensus 868 --------kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme-----------------c--- 919 (1034)
T KOG4190|consen 868 --------KVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME-----------------C--- 919 (1034)
T ss_pred --------EeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc-----------------c---
Confidence 011 12355688999988888887764 5789999999998865443200 0
Q ss_pred EEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEE-EcC-CCCe
Q 003171 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQ-WDP-NGNR 451 (842)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrl-WD~-~g~~ 451 (842)
+.. .++...|.-++....|.++-+ |-. +|..
T Consensus 920 ---------dll--------------------------------------qlaapsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 920 ---------DLL--------------------------------------QLAAPSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred ---------hhh--------------------------------------hhcCchhHHHHhhcccceeEeeehhcCCee
Confidence 000 011112223555556777777 877 6655
Q ss_pred eeeeecCCccEEEEEecCCEEEEEecCcEEEEEeC
Q 003171 452 LQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 452 l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~ 486 (842)
..+.+....+..-+..-|.-|+.+.....+.||--
T Consensus 953 h~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 953 HLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred eeccCCCCcchhhhhccCceeEEeccCcEEEEEec
Confidence 54555444554445555777778777888888853
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.73 E-value=0.00094 Score=71.26 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=67.7
Q ss_pred CCCeeeeeecCCccEEEEEecC--CEEEEEecCcEEEEEeCCCc--ccccccccccCEEEEE--eCCCEEEEEcCCCCee
Q 003171 448 NGNRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLEGN--LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIR 521 (842)
Q Consensus 448 ~g~~l~~l~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~g~--~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIr 521 (842)
.-..+.++.+|...|.+++.|+ ..|.+|+.|..|-+||+-|+ ....+.+|.+.|..+. ..-+.++|++.||.|-
T Consensus 186 ~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 186 GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence 3467888999999999999875 48999999999999999754 4668889999999886 4667899999999999
Q ss_pred ecccc
Q 003171 522 GWNVT 526 (842)
Q Consensus 522 vWd~~ 526 (842)
+|+..
T Consensus 266 ~w~mn 270 (404)
T KOG1409|consen 266 VWNMN 270 (404)
T ss_pred EEecc
Confidence 99964
No 275
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.73 E-value=0.0098 Score=62.09 Aligned_cols=96 Identities=21% Similarity=0.408 Sum_probs=63.2
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCeeeeeecCCcc----E-------EEEEecCCEEEEEecCc-EEEEEeCC-Cccccccc
Q 003171 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFA----V-------QCLCTFGSQIWVGYMNG-IVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~----V-------~sls~dG~~LasGs~Dg-tIrlWD~~-g~~i~~l~ 495 (842)
++.++.+..++.|..+|+ +|+.+-.+..+... + ..+...+..++.++.++ .+.+ |++ |+.+ |.
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~--w~ 198 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKL--WS 198 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEE--EE
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEE--EE
Confidence 345777777888999998 78877666553322 1 12233434788777777 4666 987 5533 33
Q ss_pred ccccCEEE-EEeCCCEEEEEcCCCCeeeccccCC
Q 003171 496 AHSSPVIK-MAVGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 496 gH~~~V~s-la~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
.....+.. ...++..++.++.|+.|..||+.+.
T Consensus 199 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 199 KPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ECSS-ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred ecCCCccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 33334555 5678888888889999999998764
No 276
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.72 E-value=0.00068 Score=71.22 Aligned_cols=77 Identities=13% Similarity=0.193 Sum_probs=53.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccC------------CcEEEEEEecCC-C--E
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------GPVLSLCISSYG-D--L 255 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~------------~~V~slafs~dG-~--L 255 (842)
..-|+++.|+..|.+|++|...|.|.++.-+...+ ...+-...+|+|. ..|..+.+-.++ + +
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~---ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG---CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccc---cchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 44689999999999999999999999997554210 0011122367775 246777665554 3 5
Q ss_pred EEeeCCCcEEEEeCC
Q 003171 256 WSGSEGGGIKIWPWE 270 (842)
Q Consensus 256 ~SgS~DgtIrvWd~~ 270 (842)
+-...|+|||+|.+-
T Consensus 103 LlstNdktiKlWKiy 117 (460)
T COG5170 103 LLSTNDKTIKLWKIY 117 (460)
T ss_pred EEecCCceeeeeeee
Confidence 555689999999874
No 277
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.63 E-value=0.00013 Score=77.55 Aligned_cols=198 Identities=18% Similarity=0.168 Sum_probs=114.3
Q ss_pred CcccccccccccCCCCCCCceeecCCCCCccccCceeEEEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCC
Q 003171 99 DIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGE 178 (842)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~ 178 (842)
++++|+.-.-.-+||++.| .++-.|....+..|+-++-..+-.+-+|.+..|-+-|++++...
T Consensus 185 ~e~~~~~s~~~~s~pe~n~---~~~~SlQi~~a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~q-------------- 247 (425)
T KOG2695|consen 185 NEGQFHISTYNQSLPESNN---YMLCSLQIPKAWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-------------- 247 (425)
T ss_pred cceEeehhhhhhccccCCC---CceeeecCCcchhhhhhhccceeeecccccceeEEEEeeccccc--------------
Confidence 3455554444444554222 11222333333344433333333433466777777777664321
Q ss_pred CCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec-CCC-EE
Q 003171 179 DGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LW 256 (842)
Q Consensus 179 ~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~ 256 (842)
.|. . .+-|+++.|...+.++.-|...|.|-+.|+..+.. .+ ....+-.-|..+|++|..-. +++ |.
T Consensus 248 ----sf~---s-ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq--G~--~~~a~rlyh~Ssvtslq~Lq~s~q~Lm 315 (425)
T KOG2695|consen 248 ----SFQ---S-KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ--GN--GWCAQRLYHDSSVTSLQILQFSQQKLM 315 (425)
T ss_pred ----ccc---c-chhHHHHHhcccCCeeEecccCCcEEEEEeeeccc--CC--CcceEEEEcCcchhhhhhhccccceEe
Confidence 121 2 55788898887789999999999999999876410 00 11122234788999997665 444 88
Q ss_pred EeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCC-cEE
Q 003171 257 SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFA 335 (842)
Q Consensus 257 SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~-tI~ 335 (842)
+.+.+|+|++||..-.++.......+ || ++.... .-+...+..+.|++++++ -.+
T Consensus 316 aS~M~gkikLyD~R~~K~~~~V~qYe----------------GH--vN~~a~------l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 316 ASDMTGKIKLYDLRATKCKKSVMQYE----------------GH--VNLSAY------LPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred eccCcCceeEeeehhhhcccceeeee----------------cc--cccccc------cccccccccceEEEccCeeEEE
Confidence 88899999999986533311111111 12 111111 112234456667777754 588
Q ss_pred EEEccCCcEEEEee
Q 003171 336 LWDARTRELLKVFN 349 (842)
Q Consensus 336 lWD~~tg~~l~~l~ 349 (842)
||.++.|+++.++.
T Consensus 372 iWsl~~ghLl~tip 385 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIP 385 (425)
T ss_pred EEecccCceeeccC
Confidence 99999999988764
No 278
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=97.62 E-value=0.00051 Score=74.52 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=52.4
Q ss_pred ceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCc------chHHHHHHHHHH
Q 003171 641 LAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDH 714 (842)
Q Consensus 641 l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~------~~~~~Rn~~~~~ 714 (842)
+..-.++|+.|-.+......+- ...+|. ....+||.+.+++.+.+..+.|+|.||.+.. ..-..|.++++.
T Consensus 88 ~~~~G~~iLSr~Pi~~~~~~~f--~~~~~~-d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~ 164 (283)
T TIGR03395 88 LEDGGVAIVSKWPIEEKIQYIF--NKGCGA-DNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNE 164 (283)
T ss_pred ccCCEEEEEECCCccccEEEEc--cCCCCC-ccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHH
Confidence 4455677888877643311111 122332 2346899999999999999999999998753 225679999999
Q ss_pred HHHhc
Q 003171 715 VYRTM 719 (842)
Q Consensus 715 I~~~l 719 (842)
|.+-+
T Consensus 165 i~~~i 169 (283)
T TIGR03395 165 IQDFI 169 (283)
T ss_pred HHHHH
Confidence 97764
No 279
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.60 E-value=0.0004 Score=72.69 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=78.1
Q ss_pred EEECCCCc-EEEEeCCCeEEEEcC-CC--CeeeeeecCCccEEEEEe---cCCEEEEEecCcEEEEEeCC--Cccc-ccc
Q 003171 425 LTTSIDGM-IWTGGANGLLLQWDP-NG--NRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE--GNLL-GGW 494 (842)
Q Consensus 425 l~~s~dg~-l~Sgs~DgtIrlWD~-~g--~~l~~l~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~--g~~i-~~l 494 (842)
+-+++-|. ++++-.+|.+-+-+. .. +.+++.+.|.-......+ +...+++|+.|+.+..||++ ++++ +.-
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~ 206 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS 206 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence 44555555 666667777764444 33 345578899888776655 35689999999999999987 4443 446
Q ss_pred cccccCEEEEE---eCCCEEEEEcCCCCeeeccccC
Q 003171 495 VAHSSPVIKMA---VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 495 ~gH~~~V~sla---~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+-|+..|.+|. +.+.++++||.|-.|++||.++
T Consensus 207 kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 207 KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred eeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 78999999997 4677999999999999999764
No 280
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.60 E-value=0.0083 Score=62.63 Aligned_cols=195 Identities=16% Similarity=0.238 Sum_probs=106.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCC
Q 003171 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPE 281 (842)
Q Consensus 202 dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~ 281 (842)
+++.|++++.++.+..||..+| +.+-+... .+.+.......++.++.++.|+.|..+|..+++...+....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG--------~~~W~~~~-~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTG--------KVLWRFDL-PGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTS--------EEEEEEEC-SSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-
T ss_pred eCCEEEEEcCCCEEEEEECCCC--------CEEEEeec-cccccceeeecccccccccceeeeEecccCCcceeeeeccc
Confidence 4678888899999999999887 44433322 11111112344566888888899999998887655442110
Q ss_pred ceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeec
Q 003171 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (842)
Q Consensus 282 ~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (842)
.. ..... .... ..... +..+..+. .+.|..+|+++|+.+-........
T Consensus 106 ~~------------------~~~~~----~~~~-~~~~~--~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~------ 154 (238)
T PF13360_consen 106 SS------------------PPAGV----RSSS-SPAVD--GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR------ 154 (238)
T ss_dssp SS------------------CTCST----B--S-EEEEE--TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-------
T ss_pred cc------------------ccccc----cccc-CceEe--cCEEEEEeccCcEEEEecCCCcEEEEeecCCCC------
Confidence 00 00000 0000 11111 33344443 678999999999986655331100
Q ss_pred ccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCC
Q 003171 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANG 440 (842)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~Dg 440 (842)
... .+. .. ......+.+. ++.++.++.++
T Consensus 155 ----------------------~~~----~~~------~~------------------~~~~~~~~~~-~~~v~~~~~~g 183 (238)
T PF13360_consen 155 ----------------------GSS----PIS------SF------------------SDINGSPVIS-DGRVYVSSGDG 183 (238)
T ss_dssp ----------------------SS------EE------EE------------------TTEEEEEECC-TTEEEEECCTS
T ss_pred ----------------------CCc----cee------ee------------------cccccceEEE-CCEEEEEcCCC
Confidence 000 000 00 0000112222 44666666677
Q ss_pred e-EEEEcC-CCCeeeeeecCCccEEE-EEecCCEEEEEecCcEEEEEeCC-Ccc
Q 003171 441 L-LLQWDP-NGNRLQDFQYLPFAVQC-LCTFGSQIWVGYMNGIVQVLDLE-GNL 490 (842)
Q Consensus 441 t-IrlWD~-~g~~l~~l~~H~~~V~s-ls~dG~~LasGs~DgtIrlWD~~-g~~ 490 (842)
. +.+ |. +|+.+-... ...+.. ...++..|+.++.++.|.+||++ |+.
T Consensus 184 ~~~~~-d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 184 RVVAV-DLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp SEEEE-ETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred eEEEE-ECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 4 555 88 676442222 233444 56788999999899999999987 553
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.59 E-value=0.00019 Score=77.89 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=80.0
Q ss_pred EeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCCC-cccccc-cccccCEEEEEe-CCC
Q 003171 436 GGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEG-NLLGGW-VAHSSPVIKMAV-GAG 509 (842)
Q Consensus 436 gs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g-~~i~~l-~gH~~~V~sla~-dg~ 509 (842)
.+....+.+|.. ++.+ ..+-||-+.++.+ ++|+++|.++..|..||+=...+ -.+.+| -||...|..++. ++.
T Consensus 128 agD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~ 206 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY 206 (390)
T ss_pred cCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc
Confidence 334566777877 4544 4455999999987 46899999999999999988764 446666 479999999995 777
Q ss_pred EEEEEcCCCCeeeccccCCCCCcchhhhh
Q 003171 510 YIFTLANHGGIRGWNVTSPGPLDSILCKE 538 (842)
Q Consensus 510 ~l~S~S~DgtIrvWd~~~~~~~d~~l~~~ 538 (842)
.|+|+|.|++||+||+++...++.+-...
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~L~t~dl~s 235 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKLLDTCDLSS 235 (390)
T ss_pred eeeecCCCCcEEEEecccCCcccccchhH
Confidence 78999999999999999988877654433
No 282
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.57 E-value=0.00012 Score=77.98 Aligned_cols=108 Identities=21% Similarity=0.275 Sum_probs=82.5
Q ss_pred CceEEEEECC-CCcEEEEeCCCeEEEEcC-C-----CCeeeeeecCCccEEEE---EecCCEEEEEecCcEEEEEeCC-C
Q 003171 420 RRTEALTTSI-DGMIWTGGANGLLLQWDP-N-----GNRLQDFQYLPFAVQCL---CTFGSQIWVGYMNGIVQVLDLE-G 488 (842)
Q Consensus 420 ~~v~al~~s~-dg~l~Sgs~DgtIrlWD~-~-----g~~l~~l~~H~~~V~sl---s~dG~~LasGs~DgtIrlWD~~-g 488 (842)
..|-++.|.. +..+.-|+.+|.|...|+ . |.|.+.+ .|.+.|+|+ .+++++|.+.+.+|+|+|||+. .
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 3455555555 445788999999999998 3 3566655 589999997 3578899998999999999986 5
Q ss_pred cc---cccccccccCEEEE----EeCCCEEEEEcCCCCeeeccccCC
Q 003171 489 NL---LGGWVAHSSPVIKM----AVGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 489 ~~---i~~l~gH~~~V~sl----a~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
++ +++..||.+.-.-+ .+....++++|.|.-.|+|.+...
T Consensus 332 K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 332 KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 55 88999997643322 245668999999999999998753
No 283
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.16 Score=55.13 Aligned_cols=245 Identities=10% Similarity=0.147 Sum_probs=126.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCccCCCCCcceeEEeccc----CCcEEEEEEecCCC-EEEee-CC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAH----RGPVLSLCISSYGD-LWSGS-EG 261 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~D---GtIrlWdl~~g~~~~~~~~~~~~~l~gH----~~~V~slafs~dG~-L~SgS-~D 261 (842)
.+.+.-|+++|+++.|+++..+ |.|-.+.++... -.+++..+ ..+-+.|+++++|+ |++++ .-
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~--------G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~ 110 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD--------GRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS 110 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC--------CeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC
Confidence 4456779999999999999876 567666665421 11222222 12237899999998 55665 45
Q ss_pred CcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEc
Q 003171 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDA 339 (842)
Q Consensus 262 gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~ 339 (842)
|.|.+..+..-....... ..+ .|...+...--.++.+-+.-+++++..|++..- +.|.++++
T Consensus 111 g~v~v~p~~~dG~l~~~v------~~~----------~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 111 GSVSVYPLQADGSLQPVV------QVV----------KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred ceEEEEEcccCCccccce------eee----------ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 899999885411100000 000 000000000000223445666777777777653 46889999
Q ss_pred cCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEec-CCcEEEEee----cCc
Q 003171 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAA----KGG 414 (842)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~-~~~v~~v~~----~g~ 414 (842)
..|.+...- +. .+ ..+.. ..-+.|.++++.+.+-. .+....++. .|.
T Consensus 175 ~dg~L~~~~----~~----~v----------------~~G~G----PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 175 DDGKLTPAD----PA----EV----------------KPGAG----PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred ccCcccccc----cc----cc----------------CCCCC----cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 877653211 00 00 00000 01244555555443322 122222211 121
Q ss_pred cc------------cCCCceEEEEECCCCcEEEEeC--CCeEEEEcC--CCCeeeeee---cCCccEE--EEEecCCEEE
Q 003171 415 FG------------DDNRRTEALTTSIDGMIWTGGA--NGLLLQWDP--NGNRLQDFQ---YLPFAVQ--CLCTFGSQIW 473 (842)
Q Consensus 415 ~~------------~~~~~v~al~~s~dg~l~Sgs~--DgtIrlWD~--~g~~l~~l~---~H~~~V~--sls~dG~~La 473 (842)
|. ....+..++.+++||+.+-+|. ...|.++.+ .+..+.... .|...-+ .++++|++|+
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 11 1234566789999999655553 336777766 344443332 1222223 3566789888
Q ss_pred EEec-CcEEEEEeCC
Q 003171 474 VGYM-NGIVQVLDLE 487 (842)
Q Consensus 474 sGs~-DgtIrlWD~~ 487 (842)
++.. +..|.++-.+
T Consensus 307 aa~q~sd~i~vf~~d 321 (346)
T COG2706 307 AANQKSDNITVFERD 321 (346)
T ss_pred EEccCCCcEEEEEEc
Confidence 8775 5679998754
No 284
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=97.53 E-value=0.0054 Score=69.77 Aligned_cols=297 Identities=18% Similarity=0.300 Sum_probs=150.2
Q ss_pred eeecCCCCCccccCceeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEE
Q 003171 119 LEVKPHPLRETQIGCFLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCM 197 (842)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~l 197 (842)
+++.+.|++| .+.++..+ ..+||+|+|.+|.+.+.+.-... ...++.+ ...|..+
T Consensus 197 lql~s~~~dk-----~I~al~~d~qg~LWVGTdqGv~~~e~~G~~~s---------------n~~~~lp----~~~I~ll 252 (671)
T COG3292 197 LQLASPPLDK-----AINALIADVQGRLWVGTDQGVYLQEAEGWRAS---------------NWGPMLP----SGNILLL 252 (671)
T ss_pred EEcCCCcchh-----hHHHHHHHhcCcEEEEeccceEEEchhhcccc---------------ccCCCCc----chheeee
Confidence 4454555553 34444445 55999999999999987642111 1122222 3457766
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-cc-CCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccce
Q 003171 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AH-RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKA 275 (842)
Q Consensus 198 a~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH-~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~ 275 (842)
.-|. .+.+|.|+..|..|.--...+ -.....+ +| ...|.++..+.+|.||.++.++.+++=+-+=....
T Consensus 253 ~qD~-qG~lWiGTenGl~r~~l~rq~--------Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma 323 (671)
T COG3292 253 VQDA-QGELWIGTENGLWRTRLPRQG--------LQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMA 323 (671)
T ss_pred eccc-CCCEEEeecccceeEecCCCC--------ccccccccCCccccccceeeccCCCEeeeccCceEEEecchhhhee
Confidence 6664 467899999997654322222 1111112 22 35788999999999999999987776543110000
Q ss_pred eecCCCceeeeEEEEeec-----ee-------ecccceeccce-eee---ecCCEEEEEEcCCCCEEEEeCCC-cEEEEE
Q 003171 276 LSLKPEERHTAALIVERS-----YI-------DLRSHLSVNGF-SSI---LTSDIKNLLSDHSRAKVWSAGFL-SFALWD 338 (842)
Q Consensus 276 l~~~~~~~~~~~l~~~~s-----~~-------~l~~~~~~~~~-~~~---~s~~v~~las~~~~~~v~s~s~~-tI~lWD 338 (842)
+.............+..+ .. .....+..+.. .++ ...++..+..+. +.++|-++-+ ++..|+
T Consensus 324 ~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~ 402 (671)
T COG3292 324 VINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLD 402 (671)
T ss_pred eeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhcc-CCcEEEEecccchhhhc
Confidence 000000000000000000 00 00000000000 000 012334444443 6678877754 777777
Q ss_pred ccC-CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecC----
Q 003171 339 ART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG---- 413 (842)
Q Consensus 339 ~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g---- 413 (842)
..+ +..+..-.+ .+++ +++ .+.- +.....|+|+.+|+.....++
T Consensus 403 n~n~~avlde~ag--------l~ss--------~V~--------------aive-d~dnsLWIGTs~Glvk~~pe~~~v~ 451 (671)
T COG3292 403 NKNEWAVLDEDAG--------LPSS--------EVS--------------AIVE-DPDNSLWIGTSGGLVKRDPESGRVL 451 (671)
T ss_pred cCCcccccccccC--------Cccc--------cee--------------eeee-cCCCCEEEeccCCeEecCccccchh
Confidence 665 222111000 0000 000 0000 112246899999987766421
Q ss_pred ------ccccCCCceEEEEECCCCcEEEEeCCCeEEEEcCCCCee-eeeecCCccEEEEEe-cCCEEEEEecCcEE
Q 003171 414 ------GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRL-QDFQYLPFAVQCLCT-FGSQIWVGYMNGIV 481 (842)
Q Consensus 414 ------~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~~g~~l-~~l~~H~~~V~sls~-dG~~LasGs~DgtI 481 (842)
....+...+..+...++|.||.++.+| |-.|+..++.. ..+.....+-+++.+ .+.++|.+..-+.+
T Consensus 452 n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g~g-va~~~sq~~~~~~~l~~~~q~qy~f~~~~~d~vw~~~~Rg~v 526 (671)
T COG3292 452 NLLNPGSHGLDGSRVEQLGLGPDGRLWLAAGSG-VAAWESQRRMFVPILDLTGQRQYSFVPVGGDEVWVHRLRGLV 526 (671)
T ss_pred cccccccCcCCcchhhhhccCCCCceEEEecce-eeeeccccceecccccccceeeEEEEEccCceEeeeeeceee
Confidence 111234567889999999999999998 89999866432 223322334444444 56788887544433
No 285
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.53 E-value=0.066 Score=56.61 Aligned_cols=56 Identities=20% Similarity=0.408 Sum_probs=40.8
Q ss_pred ceEEEEECCCCcEEEEe-CCCeEEEEcCCCCeeeeeecCCccEEEEEe---cCCEEEEEe
Q 003171 421 RTEALTTSIDGMIWTGG-ANGLLLQWDPNGNRLQDFQYLPFAVQCLCT---FGSQIWVGY 476 (842)
Q Consensus 421 ~v~al~~s~dg~l~Sgs-~DgtIrlWD~~g~~l~~l~~H~~~V~sls~---dG~~LasGs 476 (842)
....++++.+|.||++. ..+.|.++|.+|+.+..+......++++++ +.+.|++.+
T Consensus 185 ~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 35668899999988775 467799999999988888766567888877 445666544
No 286
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.50 E-value=0.066 Score=59.66 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=48.3
Q ss_pred EEECCCCc-EEEEe----------CCCeEEEEcC-CCCeeeeeecCCccEEE--EEecCC-EEEEEe-cCcEEEEEeCC-
Q 003171 425 LTTSIDGM-IWTGG----------ANGLLLQWDP-NGNRLQDFQYLPFAVQC--LCTFGS-QIWVGY-MNGIVQVLDLE- 487 (842)
Q Consensus 425 l~~s~dg~-l~Sgs----------~DgtIrlWD~-~g~~l~~l~~H~~~V~s--ls~dG~-~LasGs-~DgtIrlWD~~- 487 (842)
+++++||. ++... ..+.|.++|. +++.+..+.. ...+.. +++||+ +|++.. .+++|.+.|+.
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 56666655 55421 1247999999 7888887764 234555 467899 888777 58899999987
Q ss_pred Ccccccc
Q 003171 488 GNLLGGW 494 (842)
Q Consensus 488 g~~i~~l 494 (842)
++.+++.
T Consensus 332 ~k~i~~i 338 (352)
T TIGR02658 332 GKELSSV 338 (352)
T ss_pred CeEEeee
Confidence 6777665
No 287
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.49 E-value=0.11 Score=58.04 Aligned_cols=252 Identities=12% Similarity=0.166 Sum_probs=135.5
Q ss_pred CCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee-CCCcEE
Q 003171 192 SSVMCMVGDEASGVVWSGHR----DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIK 265 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~----DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIr 265 (842)
.....|+++|++++|++.+. +|.|-.|++.... ..+..+.+.......-..++++|+|+ |+.+. .+|+|-
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~----g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT----GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVS 112 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT----TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc----ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEE
Confidence 34556889999999999987 4688888876520 01122222221233456799999998 55544 689999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEccCCc
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRE 343 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~~tg~ 343 (842)
++++......... ...+ ...+.+..... -.....-++.+++++..|+.+.- +.|.++++....
T Consensus 113 v~~l~~~g~l~~~------~~~~-------~~~g~g~~~~r--q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 113 VFPLDDDGSLGEV------VQTV-------RHEGSGPNPDR--QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp EEEECTTSEEEEE------EEEE-------ESEEEESSTTT--TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred EEEccCCccccee------eeec-------ccCCCCCcccc--cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 9999652111000 0000 00000000000 00233456777888888877642 467777765433
Q ss_pred --EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCc
Q 003171 344 --LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (842)
Q Consensus 344 --~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~ 421 (842)
+...-. .. ......
T Consensus 178 ~~l~~~~~---------------------------~~-------------------------------------~~~G~G 193 (345)
T PF10282_consen 178 GKLTPVDS---------------------------IK-------------------------------------VPPGSG 193 (345)
T ss_dssp -TEEEEEE---------------------------EE-------------------------------------CSTTSS
T ss_pred ceEEEeec---------------------------cc-------------------------------------cccCCC
Confidence 211000 00 001122
Q ss_pred eEEEEECCCCc-EEEE-eCCCeEEEEcCC---CC--eeeeeecC------CccEE--EEEecCCEEEEEec-CcEEEEEe
Q 003171 422 TEALTTSIDGM-IWTG-GANGLLLQWDPN---GN--RLQDFQYL------PFAVQ--CLCTFGSQIWVGYM-NGIVQVLD 485 (842)
Q Consensus 422 v~al~~s~dg~-l~Sg-s~DgtIrlWD~~---g~--~l~~l~~H------~~~V~--sls~dG~~LasGs~-DgtIrlWD 485 (842)
...++|+|||+ ++.. -.+++|.+++.. |+ .++++... ..... .+++||++|+++.. ..+|-+++
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 34577888887 4343 356778888773 21 22222211 11223 35678999998764 77999999
Q ss_pred CC---Ccc--cccccccccCEEEEE--eCCCEEEEEc-CCCCeeecccc
Q 003171 486 LE---GNL--LGGWVAHSSPVIKMA--VGAGYIFTLA-NHGGIRGWNVT 526 (842)
Q Consensus 486 ~~---g~~--i~~l~gH~~~V~sla--~dg~~l~S~S-~DgtIrvWd~~ 526 (842)
+. |++ +..+......-..++ ++|++|+.+. .+++|.+|++.
T Consensus 274 ~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp ECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 83 333 333322223355555 5899888554 67789999864
No 288
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.40 E-value=0.049 Score=61.27 Aligned_cols=109 Identities=14% Similarity=0.143 Sum_probs=78.3
Q ss_pred CCceEEEEECCCCc---EEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEecCCEEEEEec---CcEEEEEeCCCc--c
Q 003171 419 NRRTEALTTSIDGM---IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYM---NGIVQVLDLEGN--L 490 (842)
Q Consensus 419 ~~~v~al~~s~dg~---l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~dG~~LasGs~---DgtIrlWD~~g~--~ 490 (842)
...|..+.+.|.+. +++|-.+-++-++|+.|+....+-....--..+++.+++++.++- .|.|.+||..|+ +
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence 45677788988775 456667889999999888655443222222234678899888775 579999999876 4
Q ss_pred cccccccccCEEEEEeCCCEEEEEc------CCCCeeeccccC
Q 003171 491 LGGWVAHSSPVIKMAVGAGYIFTLA------NHGGIRGWNVTS 527 (842)
Q Consensus 491 i~~l~gH~~~V~sla~dg~~l~S~S------~DgtIrvWd~~~ 527 (842)
+..+.|-+..+....+|++++.+.- -|..|++|++..
T Consensus 354 ~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 354 AGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 5577777766666678888776543 488999999865
No 289
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.33 E-value=0.0011 Score=70.47 Aligned_cols=124 Identities=21% Similarity=0.287 Sum_probs=64.0
Q ss_pred EEEEEEeCCCCCCcccc-cccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCCce
Q 003171 555 LAGTWNVGQGRASQDAL-ISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTF 633 (842)
Q Consensus 555 ~~~twNv~~~~~~~~~l-~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~~y 633 (842)
-+.|||+++.......+ .+||.. .++|| ++|||+......+ .+.+...+ +..|
T Consensus 2 ri~t~Nv~g~~~~~~~~~~~~l~~--~~~DI--v~LQE~~~~~~~~--------------------~~~~~~~~--g~~~ 55 (255)
T TIGR00633 2 KIISWNVNGLRARLHKLFLDWLKE--EQPDV--LCLQETKVADEQF--------------------PAELFEEL--GYHV 55 (255)
T ss_pred EEEEEecccHHHHhhccHHHHHHh--cCCCE--EEEEeccCchhhC--------------------CHhHhccC--CceE
Confidence 57899999875544555 777774 45665 5789986431100 00111112 2333
Q ss_pred EEEeee--eceeeEEEEEEeccccCccCceeeceeecccCcc-cCCCCeeEEEEEEeCeEEEEEeecCcCCc----chHH
Q 003171 634 ERVGSR--QLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRA-IGNKGAVGLRVRVYDRIMCFVNCHFAAHL----EAVN 706 (842)
Q Consensus 634 ~~v~s~--~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~-~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~----~~~~ 706 (842)
...... .-.|+ +||.|..+. .+.. |+... ....|- .+.+.+ ..+.++++|+++.. +..+
T Consensus 56 ~~~~~~~~~~~G~--ailsr~~~~----~~~~-----~~~~~~~~~~~r-~l~~~~--~~~~i~~vy~p~~~~~~~~~~~ 121 (255)
T TIGR00633 56 FFHGAKSKGYSGV--AILSKVEPL----DVRY-----GFGGEEHDEEGR-VITAEF--DGFTVVNVYVPNGGSRGLERLE 121 (255)
T ss_pred EEeecccCCcceE--EEEEcCCcc----eEEE-----CCCCCcccCCCc-EEEEEE--CCEEEEEEEccCCCCCCchhHH
Confidence 222221 33454 566886653 1221 21111 122332 333433 46899999998754 2345
Q ss_pred HHHHHHHHHHHh
Q 003171 707 RRNADFDHVYRT 718 (842)
Q Consensus 707 ~Rn~~~~~I~~~ 718 (842)
.|.+.|+.+.+.
T Consensus 122 ~r~~~~~~l~~~ 133 (255)
T TIGR00633 122 YKLQFWDALFQY 133 (255)
T ss_pred HHHHHHHHHHHH
Confidence 677777666554
No 290
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.33 E-value=0.023 Score=65.45 Aligned_cols=66 Identities=12% Similarity=-0.020 Sum_probs=40.1
Q ss_pred EEEECCCCc-EEEEeCC---CeEEEEcCCCCeeeeeecCCccEE--EEEecCCEEEEEec---CcEEEEEeCCCc
Q 003171 424 ALTTSIDGM-IWTGGAN---GLLLQWDPNGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYM---NGIVQVLDLEGN 489 (842)
Q Consensus 424 al~~s~dg~-l~Sgs~D---gtIrlWD~~g~~l~~l~~H~~~V~--sls~dG~~LasGs~---DgtIrlWD~~g~ 489 (842)
...+||||+ |+..+.+ ..|.+||+.+...+.+......+. .+++||++|+..+. ...|.+||+.+.
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 456889987 5544432 369999995433344443222333 34678997775433 357888898754
No 291
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.28 E-value=0.0048 Score=66.00 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=64.7
Q ss_pred eEEEEECCCC--cEEEEeCCCeEEEEcCCC--Cee---eeeecCC------------ccEEEE--EecCCEEEEEecCcE
Q 003171 422 TEALTTSIDG--MIWTGGANGLLLQWDPNG--NRL---QDFQYLP------------FAVQCL--CTFGSQIWVGYMNGI 480 (842)
Q Consensus 422 v~al~~s~dg--~l~Sgs~DgtIrlWD~~g--~~l---~~l~~H~------------~~V~sl--s~dG~~LasGs~Dgt 480 (842)
|++-.|.|.- .++-.|..|+|||-|+.. -|. +.|.... ..|..+ +.+|+||++-+. -+
T Consensus 216 ITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-lt 294 (433)
T KOG1354|consen 216 ITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LT 294 (433)
T ss_pred HhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ce
Confidence 4455566643 355566789999999942 222 1222111 122233 336899988543 58
Q ss_pred EEEEeCC--Ccccccccccc------------cCEEE---EEe--CCCEEEEEcCCCCeeecccc
Q 003171 481 VQVLDLE--GNLLGGWVAHS------------SPVIK---MAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 481 IrlWD~~--g~~i~~l~gH~------------~~V~s---la~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
|+|||+. .+++.+..-|. +.|.. +.+ ++.+++|||..+..|++++.
T Consensus 295 vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 295 VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 9999985 56777777664 33332 224 44589999999999999854
No 292
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=97.26 E-value=0.0015 Score=69.75 Aligned_cols=36 Identities=28% Similarity=0.452 Sum_probs=26.1
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccC
Q 003171 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEM 594 (842)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~ 594 (842)
-+.|||+++.......+.+||.. .++||+ +|||+..
T Consensus 2 ri~t~Ni~g~~~~~~~~~~~l~~--~~~DIi--~LQE~~~ 37 (254)
T TIGR00195 2 KIISWNVNGLRARLHKGLAWLKE--NQPDVL--CLQETKV 37 (254)
T ss_pred EEEEEEcCcHHHhHHHHHHHHHh--cCCCEE--EEEeccc
Confidence 57899999866555567778874 456765 5999864
No 293
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.22 E-value=0.038 Score=63.70 Aligned_cols=103 Identities=12% Similarity=-0.036 Sum_probs=58.6
Q ss_pred EEEECCCCc-EEEEe-CCCeEEEEc--CC--CCeeeeeecCCccEE--EEEecCCEEEEEecC---cEEEEEeCCCcccc
Q 003171 424 ALTTSIDGM-IWTGG-ANGLLLQWD--PN--GNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMN---GIVQVLDLEGNLLG 492 (842)
Q Consensus 424 al~~s~dg~-l~Sgs-~DgtIrlWD--~~--g~~l~~l~~H~~~V~--sls~dG~~LasGs~D---gtIrlWD~~g~~i~ 492 (842)
...+||||+ |+..+ .+|...+|. +. +...+.+..+...+. .+++||++|+..+.+ ..|.+||+++...+
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 357889987 66544 466555664 42 334454554444433 457899988876543 47999999744333
Q ss_pred cccccccCEEEE--EeCCCEEE-EEcCC--CCeeecccc
Q 003171 493 GWVAHSSPVIKM--AVGAGYIF-TLANH--GGIRGWNVT 526 (842)
Q Consensus 493 ~l~gH~~~V~sl--a~dg~~l~-S~S~D--gtIrvWd~~ 526 (842)
.+......+.+. ++||+.|+ ++..+ ..|.+|++.
T Consensus 365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 365 QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 333322233333 46888776 43332 345566654
No 294
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.061 Score=61.21 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=56.1
Q ss_pred EEEEECCCCcE-EE-EeC--CCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEec------CcEEEEEeCCCccc
Q 003171 423 EALTTSIDGMI-WT-GGA--NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYM------NGIVQVLDLEGNLL 491 (842)
Q Consensus 423 ~al~~s~dg~l-~S-gs~--DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~------DgtIrlWD~~g~~i 491 (842)
.++.|+|.|.+ +. |-. -|.|-+||+ +-+++..+..-...+...++||+++++++. |..|+||+..|.++
T Consensus 315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 45789999983 33 433 378999999 778999998877777778999999988873 78999999998764
Q ss_pred c
Q 003171 492 G 492 (842)
Q Consensus 492 ~ 492 (842)
.
T Consensus 395 ~ 395 (566)
T KOG2315|consen 395 H 395 (566)
T ss_pred e
Confidence 3
No 295
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=96.98 E-value=0.008 Score=63.92 Aligned_cols=207 Identities=12% Similarity=0.130 Sum_probs=109.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccc
Q 003171 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEK 274 (842)
Q Consensus 197 la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~ 274 (842)
..|||+|++||+.+.- .+.+-|.++- + +.++----..|.-+.+..|.. |-..+.|+.|.+|++..-+-
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tl--------q-~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETL--------Q-LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchh--------h-HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence 4689999999999876 5556676652 1 111100023566677777775 45788999999999854221
Q ss_pred eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCC
Q 003171 275 ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDG 352 (842)
Q Consensus 275 ~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~ 352 (842)
..+... . ........-+++|+.+...+ +..|.+|.+.|.++... .+.
T Consensus 84 ~ckIde---------------------g--------~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~--~~p 132 (447)
T KOG4497|consen 84 YCKIDE---------------------G--------QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL--PHP 132 (447)
T ss_pred EEEecc---------------------C--------CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe--ccc
Confidence 111110 0 11222333456665444433 35788999988765322 111
Q ss_pred ceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecC-CcEEEE-------ee-cCccccCCCceE
Q 003171 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRV-------AA-KGGFGDDNRRTE 423 (842)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~-~~v~~v-------~~-~g~~~~~~~~v~ 423 (842)
.. . ...++|.++++...+.+. |..-.+ |. .+.|.-++....
T Consensus 133 K~-------------------------~-----~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dlt 182 (447)
T KOG4497|consen 133 KT-------------------------N-----VKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLT 182 (447)
T ss_pred cc-------------------------C-----ceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccccc
Confidence 10 0 001233333332222111 000000 00 122333444455
Q ss_pred EEEECCCCcEEEEeCCCeEEEEcC--CCCeeeeeecCC-ccEEEE--EecCCEEEEEecCcEEEEEe
Q 003171 424 ALTTSIDGMIWTGGANGLLLQWDP--NGNRLQDFQYLP-FAVQCL--CTFGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 424 al~~s~dg~l~Sgs~DgtIrlWD~--~g~~l~~l~~H~-~~V~sl--s~dG~~LasGs~DgtIrlWD 485 (842)
.+.+||||. .+.+||. +-+.. ..|. -.|..+ +|.+++|++|+.|+.+||.+
T Consensus 183 gieWsPdg~--------~laVwd~~Leykv~---aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 183 GIEWSPDGN--------WLAVWDNVLEYKVY---AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred CceECCCCc--------EEEEecchhhheee---eeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence 677888874 4557876 22221 1222 345555 46789999999999999988
No 296
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.97 E-value=0.81 Score=51.39 Aligned_cols=125 Identities=13% Similarity=0.046 Sum_probs=79.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDG-RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DG-tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
.+.|.-..+..+++-++.|..|| .+-++|..++ +.....+.-+.|.+|..+++|+ ++.+-...-|-+.|
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---------e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---------EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCceEEEEecCCc---------eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 33466666666677889999999 8999999986 3455666678899999999999 55555556677778
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEe
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVF 348 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l 348 (842)
++++...+.-..+..... .+..+.+.+++|.+-..+.+ -+.|+|+|+.+++...+-
T Consensus 430 idngnv~~idkS~~~lIt--------------------df~~~~nsr~iAYafP~gy~----tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 430 IDNGNVRLIDKSEYGLIT--------------------DFDWHPNSRWIAYAFPEGYY----TQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred ecCCCeeEecccccceeE--------------------EEEEcCCceeEEEecCccee----eeeEEEEecCCCeEEEec
Confidence 877543322111111111 11124455566653322111 157999999998875543
No 297
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=96.95 E-value=0.0074 Score=64.27 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=27.5
Q ss_pred EEEEEEeCCCCCCc-ccccccccCCCCCceEEEEEeecccCc
Q 003171 555 LAGTWNVGQGRASQ-DALISWLGSAASDVGIVVVGLQEVEMG 595 (842)
Q Consensus 555 ~~~twNv~~~~~~~-~~l~~~l~~~~~~~di~viglQE~~~~ 595 (842)
-+.|||||+-+... ..+.+||.. .+||| |+|||.-+.
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~~--~~~DI--iclQEtK~~ 39 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFNS--VDADV--FCIQESKMQ 39 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHHh--cCCCE--EEEEeeccc
Confidence 47899999876644 358889985 55665 689998653
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.94 E-value=0.23 Score=56.54 Aligned_cols=95 Identities=22% Similarity=0.245 Sum_probs=61.9
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-Ccccccc--cccccCEEEEE
Q 003171 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW--VAHSSPVIKMA 505 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l--~gH~~~V~sla 505 (842)
++.++.++.+|.+...|+ +|+.+=+... .....+..++.+|+.++.+|.|..+|.+ |+.+=.. ..+ ....+..
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~sp~ 332 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH-RLLTAPV 332 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCC-CcccCCE
Confidence 677888888999999999 7875433221 1222345578889999999999999986 6532111 111 1122223
Q ss_pred eCCCEEEEEcCCCCeeeccccC
Q 003171 506 VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 506 ~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
..+..++.++.||.|...|..+
T Consensus 333 v~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 333 LYNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred EECCEEEEEeCCCEEEEEECCC
Confidence 3466778888899888877554
No 299
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=96.94 E-value=0.007 Score=65.09 Aligned_cols=128 Identities=16% Similarity=0.050 Sum_probs=65.3
Q ss_pred eEEEEEEEeCCCCCCc---ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccC
Q 003171 553 KILAGTWNVGQGRASQ---DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDD 629 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~---~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~ 629 (842)
.+.++|||+-..-... ....+.+-.....+|| ||+||+.-..+ .+.+ .-.+.|.+..
T Consensus 17 ~l~I~SfNIr~fgd~k~~~~~r~~~i~~il~~~DI--iglQEV~d~q~----~~l~------------~ll~~Ln~~~-- 76 (276)
T smart00476 17 SLRICAFNIQSFGDSKMSNATLMSIIVKILSRYDI--ALVQEVRDSDL----SAVP------------KLMDQLNSDS-- 76 (276)
T ss_pred cEEEEEEECcccCCccccHHHHHHHHHHHhccCCE--EEEEEeecchh----HHHH------------HHHHHHhhcC--
Confidence 3889999996322111 1112222222235665 68999843211 0011 0112222222
Q ss_pred CCceEEEeeeece----eeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCe---EEEEEeecCcCC
Q 003171 630 GSTFERVGSRQLA----GLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDR---IMCFVNCHFAAH 701 (842)
Q Consensus 630 ~~~y~~v~s~~l~----g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~---~~~Fv~~HLaa~ 701 (842)
+..|..+++..++ +-...+|-|++....+..-.....+-|-.. .=.-=...++|+...+ .|.+||+|+.+.
T Consensus 77 ~~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f~d~~~~~~~-~F~ReP~~~~F~~~~~~~~~F~li~~H~~p~ 154 (276)
T smart00476 77 PNTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLYDDGCECGND-VFSREPFVVKFSSPSTAVKEFVIVPLHTTPE 154 (276)
T ss_pred CCCceEEecCCCCCCCCCEEEEEEEecceEEEcccceecCCCCCccc-cccccceEEEEEeCCCCCccEEEEEecCChH
Confidence 3478888877664 466777888776433332221110001100 1133456677777664 799999999875
No 300
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.87 E-value=0.072 Score=60.97 Aligned_cols=112 Identities=21% Similarity=0.416 Sum_probs=71.1
Q ss_pred CCCccccCceeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCC
Q 003171 125 PLRETQIGCFLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS 203 (842)
Q Consensus 125 ~~~~~~~~~~~~~l~~~-~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg 203 (842)
+-|+.-++.++.+|..+ .+.+|++++.++..+|..+++... .+..|+ .-+|..++.|- +
T Consensus 157 ~~r~ll~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalq-------------l~s~~~------dk~I~al~~d~-q 216 (671)
T COG3292 157 DVRPLLKDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQ-------------LASPPL------DKAINALIADV-Q 216 (671)
T ss_pred CccccccCccceeeeeeccCcEEEecCCcceEEccccceEEE-------------cCCCcc------hhhHHHHHHHh-c
Confidence 34666667788889888 449999999999999987654321 111222 12566666663 5
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe--cccCCcEEEEEEecCCCEEEeeCCCcEEE
Q 003171 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGDLWSGSEGGGIKI 266 (842)
Q Consensus 204 ~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~L~SgS~DgtIrv 266 (842)
+.||.|+.+|.. +.+.++- ....+ .=..+.|+.+.-+..|.+|-|++.|..|.
T Consensus 217 g~LWVGTdqGv~-~~e~~G~---------~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~ 271 (671)
T COG3292 217 GRLWVGTDQGVY-LQEAEGW---------RASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRT 271 (671)
T ss_pred CcEEEEeccceE-EEchhhc---------cccccCCCCcchheeeeecccCCCEEEeecccceeE
Confidence 678999999943 3333331 01111 01245677777777888999998875543
No 301
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=96.85 E-value=0.0085 Score=62.13 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=47.7
Q ss_pred eEEEEEEeCeEEEEEeecCcCCcchHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCc
Q 003171 680 VGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPEL 759 (842)
Q Consensus 680 v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (842)
-.+...|.+..+||+++||.+-.+.--+|.++|...+.++.=- . .+
T Consensus 195 ~I~Ev~v~G~Kl~l~tsHLEStr~h~P~r~~qF~~~~~k~~Ea---------------------------------I-e~ 240 (349)
T KOG2756|consen 195 LIVEVNVSGNKLCLMTSHLESTRGHAPERMNQFKMVLKKMQEA---------------------------------I-ES 240 (349)
T ss_pred EEEEEeecCceEEEEeccccCCCCCChHHHHHHHHHHHHHHHH---------------------------------H-Hh
Confidence 4556667788999999999988887888999998887775200 0 01
Q ss_pred CcccEEEEeccceeeecC
Q 003171 760 SEADMVIFLGDFNYRLDG 777 (842)
Q Consensus 760 ~~~d~vf~~GDlNyRi~~ 777 (842)
...-.|||-||+|.|=..
T Consensus 241 lPnA~ViFGGD~NlrD~e 258 (349)
T KOG2756|consen 241 LPNATVIFGGDTNLRDRE 258 (349)
T ss_pred CCCceEEEcCcccchhhh
Confidence 234689999999999653
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.82 E-value=0.73 Score=48.62 Aligned_cols=87 Identities=23% Similarity=0.302 Sum_probs=56.4
Q ss_pred CceEEEEECCCCc-EE-EEeCCCeEEEEcCC--CCee---eee---ecCCccEEEEEecCC-EEEEEe-cCcEEEEEeCC
Q 003171 420 RRTEALTTSIDGM-IW-TGGANGLLLQWDPN--GNRL---QDF---QYLPFAVQCLCTFGS-QIWVGY-MNGIVQVLDLE 487 (842)
Q Consensus 420 ~~v~al~~s~dg~-l~-Sgs~DgtIrlWD~~--g~~l---~~l---~~H~~~V~sls~dG~-~LasGs-~DgtIrlWD~~ 487 (842)
.....++++||++ |+ +-+..+.|..++.+ +..+ +.+ .......-.++.|.. .||++. ..+.|.++|.+
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 4456799999997 54 55567788888883 3312 222 221223455666532 455544 68899999999
Q ss_pred CcccccccccccCEEEEEe
Q 003171 488 GNLLGGWVAHSSPVIKMAV 506 (842)
Q Consensus 488 g~~i~~l~gH~~~V~sla~ 506 (842)
|+++..+......++++++
T Consensus 214 G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 214 GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp SCEEEEEE-SSSSEEEEEE
T ss_pred ccEEEEEcCCCCCEEEEEE
Confidence 9988877766668888886
No 303
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=96.80 E-value=0.012 Score=61.94 Aligned_cols=115 Identities=13% Similarity=0.264 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-C-EEEeeCCCcEEEEeCCC
Q 003171 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 194 V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvWd~~t 271 (842)
-.|+.+++.+..|+++-.+|.+-+-+... ...+..+.|++|.-..+...|+... . ++|||+|+.+.-||+..
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~------~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETE------MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecce------eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence 45778888899999999999987444333 2345566899999999999998654 3 57999999999999862
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeCC-CcEEEEEccC
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAGF-LSFALWDART 341 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s~-~tI~lWD~~t 341 (842)
. +.+..+. ...+..| |.++.+++ ....|++|++ .+|++||.+.
T Consensus 198 p-~~~i~~n------------------~kvH~~G--------V~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 198 P-KTFIWHN------------------SKVHTSG--------VVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred C-cceeeec------------------ceeeecc--------eEEEecCCCCCceEEEeccccceeeeehhc
Confidence 1 1221111 1122333 44444443 4567888885 6899999874
No 304
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.79 E-value=0.18 Score=57.88 Aligned_cols=71 Identities=8% Similarity=0.042 Sum_probs=46.0
Q ss_pred CeEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCC--cE
Q 003171 193 SVMCMVGDEASGV-VWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGG--GI 264 (842)
Q Consensus 193 ~V~~la~dpdg~~-LaSGs~D---GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~Dg--tI 264 (842)
....-.++|||+. ++..+.+ ..|.++|+.++. ...+....+.+.+..|||||+ | ++.+.++ .|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~---------~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK---------KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc---------EEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 6677899999984 7765555 357778888862 222323455666788999997 4 4555554 45
Q ss_pred EEEeCCCc
Q 003171 265 KIWPWEAI 272 (842)
Q Consensus 265 rvWd~~t~ 272 (842)
.++++.++
T Consensus 260 y~~dl~~g 267 (419)
T PRK04043 260 YLYDTNTK 267 (419)
T ss_pred EEEECCCC
Confidence 55566553
No 305
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.76 E-value=0.09 Score=61.17 Aligned_cols=78 Identities=18% Similarity=0.308 Sum_probs=61.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCC-------CCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcE
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSD-------DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGI 264 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~-------~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtI 264 (842)
...|+.+....++||.|+.||.+|+-.+.+...+.. ..+..-++|.||.+.|.-+.|..+.+ |-|...+|.|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence 577999999999999999999999999887532111 11222356899999999999998776 6667789999
Q ss_pred EEEeCC
Q 003171 265 KIWPWE 270 (842)
Q Consensus 265 rvWd~~ 270 (842)
-||-+-
T Consensus 96 iVWmly 101 (1189)
T KOG2041|consen 96 IVWMLY 101 (1189)
T ss_pred EEEeee
Confidence 999873
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.76 E-value=0.0017 Score=67.06 Aligned_cols=72 Identities=21% Similarity=0.347 Sum_probs=60.7
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC--CEEEeeCCCcEEEEeC
Q 003171 193 SVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPW 269 (842)
Q Consensus 193 ~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrvWd~ 269 (842)
.|.|++.+|. ..+++.|+.||.+-+||+.... ...-.+++|+.+|+-|-|.|.. +|+++|+||.+--||.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEccccc-------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence 4999999985 4778899999999999998753 4445679999999999999953 4999999999999997
Q ss_pred CC
Q 003171 270 EA 271 (842)
Q Consensus 270 ~t 271 (842)
.+
T Consensus 254 s~ 255 (319)
T KOG4714|consen 254 ST 255 (319)
T ss_pred CC
Confidence 54
No 307
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.74 E-value=0.0049 Score=71.43 Aligned_cols=68 Identities=19% Similarity=0.368 Sum_probs=52.2
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CCEEEeeCCCcEEEEeCCC
Q 003171 196 CMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GDLWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 196 ~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~L~SgS~DgtIrvWd~~t 271 (842)
-|+++- ++..+|+ +...-|++||...|. ..+..+++|...|+++.|..- +.+++.+.|+|||.||.+.
T Consensus 163 qVkwnyk~p~vlas-shg~~i~vwd~r~gs-------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 163 QVKWNYKDPNVLAS-SHGNDIFVWDLRKGS-------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred eeeecccCcchhhh-ccCCceEEEeccCCC-------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 344443 3355555 445679999998874 667889999999999999763 5689999999999999854
No 308
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.68 E-value=0.0038 Score=43.36 Aligned_cols=37 Identities=38% Similarity=0.636 Sum_probs=32.3
Q ss_pred ceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
.....+.+|...|+++.|.+++. +++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667789999999999999877 68999999999996
No 309
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=96.66 E-value=0.017 Score=61.01 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=41.0
Q ss_pred ccCceeeceeec--ccCcccCCCCeeEEEEEEe-CeEEEEEeecCcCCcchHHHHHHHHHHHHHh
Q 003171 657 YVGDVDVAAVPC--GFGRAIGNKGAVGLRVRVY-DRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718 (842)
Q Consensus 657 ~i~~v~~~~v~~--G~~~~~gnKG~v~i~~~i~-~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~ 718 (842)
.|.+|+...+++ |+- -.|++-+.+... +..|-++|.||.=. -+.|.+++..|+..
T Consensus 101 pi~~v~~~~lp~~~~~~----~Rgal~a~~~~~~g~~l~V~~~HL~l~---~~~R~~Q~~~L~~~ 158 (259)
T COG3568 101 PIRDVENLALPDPTGLE----PRGALLAEIELPGGKPLRVINAHLGLS---EESRLRQAAALLAL 158 (259)
T ss_pred cccchhhccCCCCCCCC----CceeEEEEEEcCCCCEEEEEEEecccc---HHHHHHHHHHHHhh
Confidence 355666665554 432 479999999884 77999999999933 35688999999884
No 310
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.65 E-value=0.18 Score=53.37 Aligned_cols=66 Identities=11% Similarity=0.145 Sum_probs=45.6
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec------cc-CCcEEEEEEecCC-------CEEEeeC
Q 003171 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ------AH-RGPVLSLCISSYG-------DLWSGSE 260 (842)
Q Consensus 195 ~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~------gH-~~~V~slafs~dG-------~L~SgS~ 260 (842)
.-+++|||+.+||.+..-|+|+++|+.+. ++..+. +- ..+|.+|.|.+.- +|+.-..
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~---------~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y 117 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGS---------ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY 117 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccc---------eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEec
Confidence 45899999999999999999999999874 222221 11 4678888887653 2444445
Q ss_pred CCcEEEEeC
Q 003171 261 GGGIKIWPW 269 (842)
Q Consensus 261 DgtIrvWd~ 269 (842)
+|.+|-+-+
T Consensus 118 ~G~L~Sy~v 126 (282)
T PF15492_consen 118 RGQLRSYLV 126 (282)
T ss_pred cceeeeEEE
Confidence 555555544
No 311
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.52 E-value=0.99 Score=50.73 Aligned_cols=108 Identities=13% Similarity=0.101 Sum_probs=74.8
Q ss_pred CCceEEEEECCCCc-EEEEeCCC-eEEEEcCCCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-Cccccc
Q 003171 419 NRRTEALTTSIDGM-IWTGGANG-LLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (842)
Q Consensus 419 ~~~v~al~~s~dg~-l~Sgs~Dg-tIrlWD~~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (842)
...|.-..+..++. ++.|..|| .+-++|..|...+.+...-+.|-++ +++|++++++-....|.+.|++ |+....
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i 438 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI 438 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe
Confidence 33455445555554 78888888 8999999776777777777778876 4689999998877788888987 665555
Q ss_pred ccccccCEEEEEe--CCCEEEEEc----CCCCeeecccc
Q 003171 494 WVAHSSPVIKMAV--GAGYIFTLA----NHGGIRGWNVT 526 (842)
Q Consensus 494 l~gH~~~V~sla~--dg~~l~S~S----~DgtIrvWd~~ 526 (842)
-+...+-|+.+.+ ++++++-+= .-..|+++|+.
T Consensus 439 dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 439 DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 5556667777764 556666333 23456666644
No 312
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.42 E-value=0.47 Score=56.15 Aligned_cols=110 Identities=17% Similarity=0.132 Sum_probs=74.2
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC------------CCEEEE
Q 003171 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA------------SGVVWS 208 (842)
Q Consensus 142 ~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd------------g~~LaS 208 (842)
...|++ |+.+.|-|-|..+.+.... + .+| .+.|..+.+.|. .-+||+
T Consensus 25 ~~GLiAygshslV~VVDs~s~q~iqs-i------------------e~h-~s~V~~VrWap~~~p~~llS~~~~~lliAs 84 (1062)
T KOG1912|consen 25 PSGLIAYGSHSLVSVVDSRSLQLIQS-I------------------ELH-QSAVTSVRWAPAPSPRDLLSPSSSQLLIAS 84 (1062)
T ss_pred ccceEEEecCceEEEEehhhhhhhhc-c------------------ccC-ccceeEEEeccCCCchhccCccccceeEEe
Confidence 335666 6777888888755443321 0 022 455666666552 136888
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC---CC--EEEeeCCCcEEEEeCCCccceeecC
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY---GD--LWSGSEGGGIKIWPWEAIEKALSLK 279 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d---G~--L~SgS~DgtIrvWd~~t~~~~l~~~ 279 (842)
+...|.|.+||...+ ..+..++.|..+|..|+|-+. .+ |+.=..-.+|-+|+.+++++-.++.
T Consensus 85 aD~~GrIil~d~~~~--------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 85 ADISGRIILVDFVLA--------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred ccccCcEEEEEehhh--------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 888999999999886 445556788999999999764 32 4444445789999999988765553
No 313
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=96.40 E-value=0.015 Score=61.42 Aligned_cols=110 Identities=21% Similarity=0.314 Sum_probs=64.9
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCC-ce
Q 003171 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGS-TF 633 (842)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~-~y 633 (842)
-+.|||||+-+.....+.+||.. ..|| ||||||+.....-+. + ..+. .+ |+ .|
T Consensus 2 kI~SwNVNgiRar~~~~~~~l~~--~~pD--VlclQEtK~~~~~fp----~---------------~~~~-~~--GY~~~ 55 (261)
T COG0708 2 KIASWNVNGLRARLKKLLDWLEE--EQPD--VLCLQETKAQDEQFP----R---------------EELE-AL--GYHHV 55 (261)
T ss_pred eeEEEehhhHHHHHHHHHHHHHH--hCCC--EEEEEecccCcccCC----H---------------hHHh-hC--CceEE
Confidence 47899999987766668899986 3446 578999865322110 0 0111 12 33 33
Q ss_pred EEEeeeeceeeEEEEEEeccccCccCceeeceeecccCccc-CCCCeeEEEEEEeCeEEEEEeecCcCCcc
Q 003171 634 ERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAI-GNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (842)
Q Consensus 634 ~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~-gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~ 703 (842)
..-+.+.-.|+ ++++|.... .|..|+++.- -..=+=.|...+.+ |.++|.=++.++.
T Consensus 56 ~~~gqKgysGV--ailsr~~~~---------~v~~g~~~~~~~d~e~R~I~a~~~~--~~v~~~Y~PnG~~ 113 (261)
T COG0708 56 FNHGQKGYSGV--AILSKKPPD---------DVRRGFPGEEEDDEEGRVIEAEFDG--FRVINLYFPNGSS 113 (261)
T ss_pred EecCcCCcceE--EEEEccCch---------hhhcCCCCCccccccCcEEEEEECC--EEEEEEEcCCCCC
Confidence 33444444555 567787664 5567877521 11223344555555 8889999998876
No 314
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.24 E-value=1.4 Score=50.76 Aligned_cols=99 Identities=9% Similarity=0.003 Sum_probs=51.7
Q ss_pred EECCCCc-EEEEe-CCC--eEEEEcCCCCeeeeeecCCccEEEEEecCCEEEEEecC---------cEEEEEeCCCcccc
Q 003171 426 TTSIDGM-IWTGG-ANG--LLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMN---------GIVQVLDLEGNLLG 492 (842)
Q Consensus 426 ~~s~dg~-l~Sgs-~Dg--tIrlWD~~g~~l~~l~~H~~~V~sls~dG~~LasGs~D---------gtIrlWD~~g~~i~ 492 (842)
.++|||+ |+-.+ ..+ .|.+.|+++...+.+.........+++||++|+..+.. ..|.+.|+++...+
T Consensus 283 ~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 4677775 54333 222 57777885433322222111223778999987765543 36788888743333
Q ss_pred ccccc-ccCEEEEEeCCCEEEEEcCC-CCeeecc
Q 003171 493 GWVAH-SSPVIKMAVGAGYIFTLANH-GGIRGWN 524 (842)
Q Consensus 493 ~l~gH-~~~V~sla~dg~~l~S~S~D-gtIrvWd 524 (842)
.++.. ...-.+.++||+.++-.+.+ +.-.+|-
T Consensus 363 ~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 363 RLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred ECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 33322 11223456788877644433 3333443
No 315
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=96.23 E-value=0.022 Score=67.36 Aligned_cols=31 Identities=16% Similarity=0.373 Sum_probs=24.5
Q ss_pred eEEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 689 RIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 689 ~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
..||++|+||-.+...-.-|..+...|++.+
T Consensus 417 ~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l 447 (606)
T PLN03144 417 QLLCVANTHIHANQELKDVKLWQVHTLLKGL 447 (606)
T ss_pred cEEEEEEeeeccCCccchhHHHHHHHHHHHH
Confidence 3699999999777665667778888888775
No 316
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.21 E-value=2.5 Score=46.20 Aligned_cols=117 Identities=12% Similarity=0.145 Sum_probs=74.2
Q ss_pred CeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCccCCCCCcceeEEecccCCc----------EEEEEEecCCC-EEEee-
Q 003171 193 SVMCMVGDEASGVVWSGHRD-GRIMCWKMNARLLDSDDGFGEVLSWQAHRGP----------VLSLCISSYGD-LWSGS- 259 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~D-GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~----------V~slafs~dG~-L~SgS- 259 (842)
+-.-+++|++|+.|+++.+- |.|.+.-+... ...........|.++ +.+..|+|+|+ |++..
T Consensus 90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d-----G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD-----GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred CCeEEEECCCCCEEEEEEccCceEEEEEcccC-----CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 44779999999999999876 58899988652 112233334456555 88999999998 56554
Q ss_pred -CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEE
Q 003171 260 -EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFAL 336 (842)
Q Consensus 260 -~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~l 336 (842)
.| .|.+++++.+. ++... .. .. .+...-+.+++.+++..+.... +.+|.+
T Consensus 165 G~D-ri~~y~~~dg~--L~~~~-~~----------------~v-------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v 217 (346)
T COG2706 165 GTD-RIFLYDLDDGK--LTPAD-PA----------------EV-------KPGAGPRHIVFHPNGKYAYLVNELNSTVDV 217 (346)
T ss_pred CCc-eEEEEEcccCc--ccccc-cc----------------cc-------CCCCCcceEEEcCCCcEEEEEeccCCEEEE
Confidence 34 57888886432 11100 00 00 0122346677777777666665 468999
Q ss_pred EEccC
Q 003171 337 WDART 341 (842)
Q Consensus 337 WD~~t 341 (842)
|....
T Consensus 218 ~~y~~ 222 (346)
T COG2706 218 LEYNP 222 (346)
T ss_pred EEEcC
Confidence 98876
No 317
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.20 E-value=0.02 Score=65.68 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=58.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.+.|.|++++|+...++.|..||+|++||...+ ..++.-+.=..+.++++|+|. ++.|+.-|-|.+||+
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~----------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRG----------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCC----------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 568999999999999999999999999998774 222222334568899999998 578999999999998
Q ss_pred CC
Q 003171 270 EA 271 (842)
Q Consensus 270 ~t 271 (842)
.-
T Consensus 329 AL 330 (545)
T PF11768_consen 329 AL 330 (545)
T ss_pred ec
Confidence 54
No 318
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.12 E-value=0.097 Score=55.53 Aligned_cols=110 Identities=11% Similarity=0.060 Sum_probs=65.6
Q ss_pred eEEEEECCCCc--EEEEeCCCeEEEEcCCC--Cee---eeeec------C------CccEEEE--EecCCEEEEEecCcE
Q 003171 422 TEALTTSIDGM--IWTGGANGLLLQWDPNG--NRL---QDFQY------L------PFAVQCL--CTFGSQIWVGYMNGI 480 (842)
Q Consensus 422 v~al~~s~dg~--l~Sgs~DgtIrlWD~~g--~~l---~~l~~------H------~~~V~sl--s~dG~~LasGs~Dgt 480 (842)
|++..|+|... +.-.+..|+|++-|+.. -|. +.+.. | ...|..+ ++.|++|++-+. -+
T Consensus 224 ItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-lt 302 (460)
T COG5170 224 ITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LT 302 (460)
T ss_pred HhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ce
Confidence 44455666533 33345578999999842 121 11211 1 1223333 346889988654 48
Q ss_pred EEEEeCC--Ccccccccccc------------cCEEE---EEe--CCCEEEEEcCCCCeeeccccCCCCCc
Q 003171 481 VQVLDLE--GNLLGGWVAHS------------SPVIK---MAV--GAGYIFTLANHGGIRGWNVTSPGPLD 532 (842)
Q Consensus 481 IrlWD~~--g~~i~~l~gH~------------~~V~s---la~--dg~~l~S~S~DgtIrvWd~~~~~~~d 532 (842)
|+|||+. .+++.+..-|. +.|.. +.+ |.+.++|||..+.--++...+.++.|
T Consensus 303 vkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg~~D 373 (460)
T COG5170 303 VKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFKD 373 (460)
T ss_pred EEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccCCCCc
Confidence 9999986 46777776653 44443 223 56789999998887777755555544
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.11 Score=57.07 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=62.5
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~-~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (842)
+..|..++|+|... +|..++.+.+|+|.|+++. ....+..+| +.+++++|+-|.. |+.|-..|.|-|+
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--------~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--------CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccc--------eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 66799999999775 8999999999999999985 345566777 7999999998875 7899999999999
Q ss_pred eCCCc
Q 003171 268 PWEAI 272 (842)
Q Consensus 268 d~~t~ 272 (842)
|+...
T Consensus 264 D~R~~ 268 (463)
T KOG1645|consen 264 DMRQP 268 (463)
T ss_pred EccCC
Confidence 99653
No 320
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.85 E-value=0.011 Score=61.26 Aligned_cols=66 Identities=23% Similarity=0.425 Sum_probs=55.5
Q ss_pred cEEEEEec---CCEEEEEecCcEEEEEeCC--CcccccccccccCEEEEEe---CCCEEEEEcCCCCeeecccc
Q 003171 461 AVQCLCTF---GSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 461 ~V~sls~d---G~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrvWd~~ 526 (842)
.|.+++.+ ...++.|+.||.|-|||.+ ..+...+.+|..+|+.|-+ ++..|+++|.||.+.-||..
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 47777653 3478889999999999986 3567889999999999985 67899999999999999954
No 321
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.84 E-value=0.28 Score=45.09 Aligned_cols=89 Identities=19% Similarity=0.187 Sum_probs=60.9
Q ss_pred CCCCc--EEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe-cCCEEEEEecCcEEEEEeCCCcccccccccccCEEEE
Q 003171 428 SIDGM--IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKM 504 (842)
Q Consensus 428 s~dg~--l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sl 504 (842)
..||. |+.||.|..||+|+-+ +.+.+++- +..|.+|.. .+.+++-|-.+|||-+|+-..++-+.-..| .+.++
T Consensus 11 d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKSK~--~~~~~ 86 (111)
T PF14783_consen 11 DGDGENELLVGSDDFEIRVFKGD-EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKSKN--QVTSM 86 (111)
T ss_pred CCCCcceEEEecCCcEEEEEeCC-cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeeccCC--CeEEE
Confidence 34543 9999999999999954 56666653 578888876 456888889999999998754443333333 36776
Q ss_pred E-eC----CC-EEEEEcCCCCe
Q 003171 505 A-VG----AG-YIFTLANHGGI 520 (842)
Q Consensus 505 a-~d----g~-~l~S~S~DgtI 520 (842)
+ .| |. -|++|=.+|.|
T Consensus 87 ~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 87 AFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred EEEcCCCCCceEEEEEecCCeE
Confidence 5 22 22 36666666654
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.82 E-value=2.3 Score=46.26 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=41.0
Q ss_pred EEEcC-CCCEEEEEeCCCc-EEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEE-----eeCCCcEEEEe
Q 003171 197 MVGDE-ASGVVWSGHRDGR-IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS-----GSEGGGIKIWP 268 (842)
Q Consensus 197 la~dp-dg~~LaSGs~DGt-IrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S-----gS~DgtIrvWd 268 (842)
++.+| +...++-+-.-|+ ..+||..++..-..-....-+.|-|| -+||+||+ |++ .+..|.|-|||
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 45666 5566777777775 45788877620000000112344556 47999998 554 34468999999
Q ss_pred CC
Q 003171 269 WE 270 (842)
Q Consensus 269 ~~ 270 (842)
+.
T Consensus 84 ~~ 85 (305)
T PF07433_consen 84 AA 85 (305)
T ss_pred Cc
Confidence 97
No 323
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.81 E-value=1.4 Score=46.86 Aligned_cols=68 Identities=12% Similarity=0.046 Sum_probs=42.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC---cEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 197 la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~---~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
++.+++|++||. -+|..|.+-...... . ..+.+.+-+++ .=.-|+||||+. |+-+...|+|+++|+.+
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf----~--si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDF----S--SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCc----h--heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 455667777765 466666665544321 0 11122222222 246789999998 56788889999999965
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=0.1 Score=61.75 Aligned_cols=95 Identities=12% Similarity=0.242 Sum_probs=70.7
Q ss_pred CCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEec-------CCEEEEEecCcEEEEEeCC--Ccccc-ccccc
Q 003171 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-------GSQIWVGYMNGIVQVLDLE--GNLLG-GWVAH 497 (842)
Q Consensus 430 dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~d-------G~~LasGs~DgtIrlWD~~--g~~i~-~l~gH 497 (842)
+|. ++|||.||+|.+-.+ +++...++.- ..++.+++.+ .++.++|+.-| +.+.... |+... .+..-
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence 454 999999999999988 6655444432 3577777643 45899999888 8888765 44322 35556
Q ss_pred ccCEEEEEeCCCEEEEEcCCCCeeeccccC
Q 003171 498 SSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 498 ~~~V~sla~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.++|.++.+.|+++||++.+| ||++|...
T Consensus 160 eG~I~~i~W~g~lIAWand~G-v~vyd~~~ 188 (846)
T KOG2066|consen 160 EGPIHSIKWRGNLIAWANDDG-VKVYDTPT 188 (846)
T ss_pred ccceEEEEecCcEEEEecCCC-cEEEeccc
Confidence 689999999999999998776 89999654
No 325
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=2.6 Score=48.46 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=49.2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee-----------CCC
Q 003171 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-----------EGG 262 (842)
Q Consensus 195 ~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-----------~Dg 262 (842)
+-+.+||-|.+|+|=+..|. .+|--.. +..++.+ .|. .|.-+.|||.-+ |+|=| +..
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI-~lWGG~~--------f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGI-ALWGGES--------FDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeEEecCCceEEEEEeccce-eeecCcc--------HHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCc
Confidence 34789999999999999885 4994333 3444433 354 577889999876 76533 236
Q ss_pred cEEEEeCCCccc
Q 003171 263 GIKIWPWEAIEK 274 (842)
Q Consensus 263 tIrvWd~~t~~~ 274 (842)
.++|||+.++..
T Consensus 283 ~l~IWDI~tG~l 294 (698)
T KOG2314|consen 283 QLIIWDIATGLL 294 (698)
T ss_pred eEEEEEccccch
Confidence 899999988653
No 326
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=95.60 E-value=0.1 Score=61.37 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=39.7
Q ss_pred EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEee
Q 003171 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS 259 (842)
Q Consensus 205 ~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS 259 (842)
++|.|...|+|-+.|+.++ ..-..+..|+..|.++-|..+..|+|.+
T Consensus 439 LvAvGT~sGTV~vvdvst~--------~v~~~fsvht~~VkgleW~g~sslvSfs 485 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTN--------AVAASFSVHTSLVKGLEWLGNSSLVSFS 485 (1062)
T ss_pred eEEeecCCceEEEEEecch--------hhhhhhcccccceeeeeeccceeEEEee
Confidence 6899999999999999986 3445678899999999998877777654
No 327
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.52 E-value=0.03 Score=57.39 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=68.3
Q ss_pred CCcEEEEeCCCeEEEEcCC--CCeeeeeecCCccEEEEEe---cCCEEEEEecCcEEEEEeCC-Ccccccccccc-cCEE
Q 003171 430 DGMIWTGGANGLLLQWDPN--GNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS-SPVI 502 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~~--g~~l~~l~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~-~~V~ 502 (842)
+..++.|+.||.|.+|..+ |.....+..-.+.|-+.-+ ++.+.++|..||.||.|+.+ ++.+.....|+ .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 3458889999999999885 4333333333455666655 35589999999999999987 66666666777 4554
Q ss_pred EEE--eCCCEEEEE--cCCCCeeeccccC
Q 003171 503 KMA--VGAGYIFTL--ANHGGIRGWNVTS 527 (842)
Q Consensus 503 sla--~dg~~l~S~--S~DgtIrvWd~~~ 527 (842)
.+. ..++.+.++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 433 355667776 8888888888653
No 328
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.41 E-value=0.038 Score=37.98 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=21.7
Q ss_pred CeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEe
Q 003171 450 NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 450 ~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (842)
+++..+..|...|+++.. .+.++++|+.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345555566666666654 245666666666666664
No 329
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.36 E-value=0.05 Score=65.01 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=77.2
Q ss_pred EEEEeCCCeEEEEcCC-CCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEeCCCE
Q 003171 433 IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGY 510 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~~ 510 (842)
++-|+-...+...|++ ++..++.......|.-+...++++.+|...|+|-|-|++ -+.++++.+|++.|..+...|+.
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNl 229 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNL 229 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCe
Confidence 4445545557788995 455555554455587788899999999999999999998 46799999999999999999999
Q ss_pred EEEEcC---------CCCeeeccccCC
Q 003171 511 IFTLAN---------HGGIRGWNVTSP 528 (842)
Q Consensus 511 l~S~S~---------DgtIrvWd~~~~ 528 (842)
|+|+|. |..|+|||++..
T Consensus 230 LitCG~S~R~~~l~~D~FvkVYDLRmm 256 (1118)
T KOG1275|consen 230 LITCGYSMRRYNLAMDPFVKVYDLRMM 256 (1118)
T ss_pred EEEeecccccccccccchhhhhhhhhh
Confidence 999884 678999998753
No 330
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.23 E-value=1.2 Score=46.88 Aligned_cols=73 Identities=8% Similarity=-0.058 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 194 V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
+.++++|+|++++++-+.-..|-.+.++... ...+......-++.=.+..|+.... +++++.||++.|||+..
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s-----ey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDES-----EYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCcc-----ceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence 7889999999999999888888888887642 1111112233345567788888765 78999999999999965
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=1.3 Score=53.15 Aligned_cols=80 Identities=11% Similarity=0.200 Sum_probs=52.5
Q ss_pred CceEEEEECCCCc--EEEEeCCCeEEEEcCCCCe--eeeeecCCccEEEEEe-cCCE-EEEEecCcEEEEEeCCCc-ccc
Q 003171 420 RRTEALTTSIDGM--IWTGGANGLLLQWDPNGNR--LQDFQYLPFAVQCLCT-FGSQ-IWVGYMNGIVQVLDLEGN-LLG 492 (842)
Q Consensus 420 ~~v~al~~s~dg~--l~Sgs~DgtIrlWD~~g~~--l~~l~~H~~~V~sls~-dG~~-LasGs~DgtIrlWD~~g~-~i~ 492 (842)
..|+.|++-.|++ +.+++.. .|.++.++|+- ++.+..|...++|.++ +++. +++| .+..|.+||..++ ..-
T Consensus 172 ~pITgL~~~~d~~s~lFv~Tt~-~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~~~~cf 249 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVATTE-QVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-GSEFLYFYDSDGRGPCF 249 (933)
T ss_pred CCceeeEEecCCceeEEEEecc-eeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-cCceEEEEcCCCcceee
Confidence 3466677767776 3455544 59999997765 5667778889999876 4554 4443 4567999998753 344
Q ss_pred ccc-ccccCE
Q 003171 493 GWV-AHSSPV 501 (842)
Q Consensus 493 ~l~-gH~~~V 501 (842)
++. ||....
T Consensus 250 af~~g~kk~~ 259 (933)
T KOG2114|consen 250 AFEVGEKKEM 259 (933)
T ss_pred eecCCCeEEE
Confidence 454 665443
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=0.5 Score=56.23 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=69.1
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC------CCEEEeeCCCcEEEEeCCCc-
Q 003171 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY------GDLWSGSEGGGIKIWPWEAI- 272 (842)
Q Consensus 200 dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d------G~L~SgS~DgtIrvWd~~t~- 272 (842)
+.+|.+++|+|.||+|.|-.+.++ ++..++. -..++.+|+++|| +++++|+.-| +-+....=.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~--------~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTD--------DEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCC--------ccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 568999999999999999988876 3443322 1468999999998 3488998877 655543110
Q ss_pred -cceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeec
Q 003171 273 -EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 273 -~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~ 350 (842)
.....++.. .+.+.++.- -|..++=++|.+|+++|..+++.+..+..
T Consensus 150 nk~~v~l~~~-----------------------------eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 150 NKDSVVLSEG-----------------------------EGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred CccceeeecC-----------------------------ccceEEEEe--cCcEEEEecCCCcEEEeccccceeeccCC
Confidence 111101000 112223222 23444445677899999999887765543
No 333
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=94.91 E-value=0.059 Score=61.03 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=49.3
Q ss_pred EEEEEeccccCccCc--eeeceeecccCcccCCCCeeEEEEEEeCe---EEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 646 IAVWVRKNLKDYVGD--VDVAAVPCGFGRAIGNKGAVGLRVRVYDR---IMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 646 l~vf~r~~~~~~i~~--v~~~~v~~G~~~~~gnKG~v~i~~~i~~~---~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
++++-+...-..+-+ |...-...++.+.--=++.|.++|++-+. .++..|.||-=|......|.++...|+..+
T Consensus 204 ~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~vrL~Q~~iiL~~~ 282 (495)
T KOG2338|consen 204 VAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDVRLAQVYIILAEL 282 (495)
T ss_pred EEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccchhhHHHHHHHHHH
Confidence 445555554333333 33333334444321226677788877665 899999999999888888999999999886
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.70 E-value=9.4 Score=45.35 Aligned_cols=115 Identities=20% Similarity=0.226 Sum_probs=74.4
Q ss_pred eEEEEecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 003171 135 LRTIVCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (842)
Q Consensus 135 ~~~l~~~~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG 213 (842)
++++..+++-+..|+ -|.|.+++-..+..... + ..+. .+.+..+.++++..++|.|+..|
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~----------------~--~~~~-~~~~~~~~vs~~e~lvAagt~~g 98 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL----------------K--NEGA-TGITCVRSVSSVEYLVAAGTASG 98 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcc----------------c--ccCc-cceEEEEEecchhHhhhhhcCCc
Confidence 334444455565554 57888888654322110 1 1111 44556667788889999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEe-cccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
.|-+.-+..+.. ........+ +.|...|++++||+||. +++|-.-|+|-+-.+++
T Consensus 99 ~V~v~ql~~~~p---~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 99 RVSVFQLNKELP---RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eEEeehhhccCC---CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 998777665421 111111111 34889999999999997 89999999998888766
No 335
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=94.65 E-value=0.38 Score=51.38 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=27.8
Q ss_pred CCCCeeEEEEEEeCeEEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 675 GNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 675 gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
..+..+++++. .+.|.+.||.+..+ ..|.+..+.|..-+
T Consensus 140 ~~Rpilgi~i~----~~~ffstH~~a~~~--~da~aiV~~I~~~f 178 (271)
T PRK15251 140 ASRPIIGIRIG----NDVFFSIHALANGG--TDAGAIVRAVHNFF 178 (271)
T ss_pred cccceEEEEec----CeEEEEeeecCCCC--ccHHHHHHHHHHHH
Confidence 36778888773 37999999999832 23777777776653
No 336
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.62 E-value=3.7 Score=44.71 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=40.0
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEe
Q 003171 197 MVGDEASGVVWSGHR-----DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSG 258 (842)
Q Consensus 197 la~dpdg~~LaSGs~-----DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~Sg 258 (842)
-+||+||++|++-=. .|.|-|||...+ ++.+-.|..|.=.=..|.+.|||+ |+.+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-------~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARG-------YRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCC-------cEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 368999999999644 468999999854 256667776643335678999995 6544
No 337
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.61 E-value=5.9 Score=43.53 Aligned_cols=56 Identities=14% Similarity=0.367 Sum_probs=40.8
Q ss_pred eEEEEECCCCcEEEEeCC-C-eEEEEcCCCCeeeeeecCCccEEEEEecC---CEEEEEec
Q 003171 422 TEALTTSIDGMIWTGGAN-G-LLLQWDPNGNRLQDFQYLPFAVQCLCTFG---SQIWVGYM 477 (842)
Q Consensus 422 v~al~~s~dg~l~Sgs~D-g-tIrlWD~~g~~l~~l~~H~~~V~sls~dG---~~LasGs~ 477 (842)
.-.++...+|.+|++... | .|.+|+.+|+.++.+......+.++++-| +.|++.+.
T Consensus 215 PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 215 PDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 334667788899954444 3 79999999999998887767778877654 66666553
No 338
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=94.38 E-value=14 Score=47.01 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=49.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEE----ECCCCccCCCCCcceeEEeccc-CCcEEEEEEecCCC-EEEeeCCCcE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCW----KMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGSEGGGI 264 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlW----dl~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~-L~SgS~DgtI 264 (842)
.+.|.++.+-++...|..+..+|-|.+. +..+. .....|- ...|.+++||||++ |+-...+++|
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~----------~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l 144 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDED----------EIEIVGSVDSGILAASWSPDEELLALVTGEGNL 144 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc----------eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEE
Confidence 4578899998899999999999999888 44432 1122232 56899999999998 4555556777
Q ss_pred EEEe
Q 003171 265 KIWP 268 (842)
Q Consensus 265 rvWd 268 (842)
-+-+
T Consensus 145 ~~mt 148 (928)
T PF04762_consen 145 LLMT 148 (928)
T ss_pred EEEe
Confidence 6654
No 339
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.06 E-value=9.3 Score=40.31 Aligned_cols=111 Identities=19% Similarity=0.267 Sum_probs=59.4
Q ss_pred CCccccCceeEEEEe-cCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEE-EEEcCC
Q 003171 126 LRETQIGCFLRTIVC-TEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMC-MVGDEA 202 (842)
Q Consensus 126 ~~~~~~~~~~~~l~~-~~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~-la~dpd 202 (842)
.||+--+..+..-+. -++.+.+|- .+.+++-+..++..... |.- -..|.| ...|++
T Consensus 46 ~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~-----------------f~~----~~~vk~~a~~d~~ 104 (354)
T KOG4649|consen 46 IWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWN-----------------FVI----LETVKVRAQCDFD 104 (354)
T ss_pred EeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheee-----------------eee----hhhhccceEEcCC
Confidence 455444444432222 255666653 66777777766533221 110 112222 346789
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec-CCCEEEeeCCCcEE
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGDLWSGSEGGGIK 265 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~L~SgS~DgtIr 265 (842)
+++||.|+.|+++..-|..+. .++.+.+--.+.-.+=++.| ++.|+.++..|.|-
T Consensus 105 ~glIycgshd~~~yalD~~~~--------~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 105 GGLIYCGSHDGNFYALDPKTY--------GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred CceEEEecCCCcEEEeccccc--------ceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence 999999999999998887764 34443332111112223444 56676666555443
No 340
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.86 E-value=3.6 Score=48.59 Aligned_cols=108 Identities=18% Similarity=0.248 Sum_probs=66.7
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCC--eeeeeec-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAP--FKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL 224 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g-~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~ 224 (842)
|.||-++|--+.+...-. ..+|-..... .-+.+.| ..+|.-+.+..+.+.|-|...+|.|.+|-+-.|.
T Consensus 33 G~dGlLKVlKl~t~t~d~--------~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs 104 (1189)
T KOG2041|consen 33 GADGLLKVLKLGTDTTDL--------NKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS 104 (1189)
T ss_pred cccceeEEEEccccCCcc--------cccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeeccc
Confidence 789999999886543221 1222111111 1111223 7889999999999999999999999999887652
Q ss_pred cCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 225 LDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 225 ~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
=+++ ..-.-....|.+|+|..||. +...-+||.|-|=.+
T Consensus 105 -----W~EE-MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 105 -----WCEE-MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred -----HHHH-HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 0011 11112245788999988886 555556665544333
No 341
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.49 Score=52.83 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=57.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCE-EEeeC-CCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSE-GGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~-DgtIrvWd 268 (842)
...|+-+... ..+.+.+||.||.+|-|.-..- ...+-+..+..|-+.|.+++.+-+|.| .|.+. |..+|++|
T Consensus 9 rd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i-----sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 9 RDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI-----SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred cceeeeEeee-hhheEEeeecchhhhhcCCCCc-----cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence 4455555544 4589999999999999975441 111345567899999999999999985 68787 99999999
Q ss_pred CCC
Q 003171 269 WEA 271 (842)
Q Consensus 269 ~~t 271 (842)
+++
T Consensus 83 vEn 85 (558)
T KOG0882|consen 83 VEN 85 (558)
T ss_pred eec
Confidence 865
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.60 E-value=13 Score=44.22 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=49.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCE-EEeeCCCcEEEEeCCC
Q 003171 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEA 271 (842)
Q Consensus 198 a~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~~t 271 (842)
++|..+++|+-|+.-|.+.+++-.++. ...+...|-.+.+..+.+|++..+ +.|+..|.|-|..+..
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~-------~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGE-------MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchh-------hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence 345567999999999999999987763 333444444566777788888875 5788888888877644
No 343
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=93.43 E-value=0.25 Score=57.01 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=47.8
Q ss_pred CCceEEEEECCCCc-EEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC
Q 003171 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 419 ~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (842)
...|.+.+.+|+.. ++.|+.||+|++||.+.+..+ +..+.-..+.++ ++|..+++|+..|.|++||..
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 34566778888765 889999999999998433222 222233334444 578899999999999999976
No 344
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=93.43 E-value=6.2 Score=45.11 Aligned_cols=49 Identities=6% Similarity=0.015 Sum_probs=36.1
Q ss_pred cEEEEEeCCCcccccccccccCEEEEEe--CCCE--EEEEcCCCCeeeccccC
Q 003171 479 GIVQVLDLEGNLLGGWVAHSSPVIKMAV--GAGY--IFTLANHGGIRGWNVTS 527 (842)
Q Consensus 479 gtIrlWD~~g~~i~~l~gH~~~V~sla~--dg~~--l~S~S~DgtIrvWd~~~ 527 (842)
..++|++++++-+.+...-.++|....+ +++. +++|-.+.++.+.|++.
T Consensus 255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence 5789999887666666566889999886 5554 45666788888888653
No 345
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=0.28 Score=54.00 Aligned_cols=88 Identities=20% Similarity=0.176 Sum_probs=67.6
Q ss_pred cCCCceEEEEECCCCc--EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEec---CCEEEEEecCcEEEEEeCC--C
Q 003171 417 DDNRRTEALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE--G 488 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~--g 488 (842)
++...|..++|||... +..++.+.+|++.|+ +..++..+..| ..+++.+.| -.+|+.|-..|.|.++|+. .
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 4556677899998655 778999999999999 56677888887 788888774 3499999999999999986 2
Q ss_pred cccccccc--cccCEEEEE
Q 003171 489 NLLGGWVA--HSSPVIKMA 505 (842)
Q Consensus 489 ~~i~~l~g--H~~~V~sla 505 (842)
..+..+.+ -..+|..|+
T Consensus 270 ~~~~e~~a~~t~~pv~~i~ 288 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIA 288 (463)
T ss_pred chHhhhhhhhccCcceeec
Confidence 34555554 345677766
No 346
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.03 E-value=9.2 Score=42.06 Aligned_cols=97 Identities=21% Similarity=0.331 Sum_probs=58.3
Q ss_pred CCceEEEEECCCCc-EEEEeC-CCeEEEEcCC---CC---e--eeeeecCCccEEEEEecCC-EEEEEec-Cc-EEEEEe
Q 003171 419 NRRTEALTTSIDGM-IWTGGA-NGLLLQWDPN---GN---R--LQDFQYLPFAVQCLCTFGS-QIWVGYM-NG-IVQVLD 485 (842)
Q Consensus 419 ~~~v~al~~s~dg~-l~Sgs~-DgtIrlWD~~---g~---~--l~~l~~H~~~V~sls~dG~-~LasGs~-Dg-tIrlWD 485 (842)
......|+||||++ ++.+-+ .+.|..++.. +. . ...+..+.+.--.++.|.+ .||++.. +| .|.+|+
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 34445799999996 665543 3667666553 21 1 1111112222233444433 5664443 33 999999
Q ss_pred CCCcccccccccccCEEEEEeCC---CEEEEEc
Q 003171 486 LEGNLLGGWVAHSSPVIKMAVGA---GYIFTLA 515 (842)
Q Consensus 486 ~~g~~i~~l~gH~~~V~sla~dg---~~l~S~S 515 (842)
.+|+++.....+...+.++++.| +.|+..|
T Consensus 242 pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 242 PDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 99999988888877888888644 6555443
No 347
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.62 E-value=0.41 Score=49.30 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=65.9
Q ss_pred EEecCCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC-CCCEEEEEeCCCcE
Q 003171 138 IVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRI 215 (842)
Q Consensus 138 l~~~~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp-dg~~LaSGs~DGtI 215 (842)
+...+..++.| +|+.|.+|+....-. . .+..++ +..+|.|+...- ++.+.++|..||.|
T Consensus 66 v~~~~~~~~vG~~dg~v~~~n~n~~g~--~------------~d~~~s-----~~e~i~~~Ip~~~~~~~~c~~~~dg~i 126 (238)
T KOG2444|consen 66 VVTASAKLMVGTSDGAVYVFNWNLEGA--H------------SDRVCS-----GEESIDLGIPNGRDSSLGCVGAQDGRI 126 (238)
T ss_pred ecccCceEEeecccceEEEecCCccch--H------------HHhhhc-----ccccceeccccccccceeEEeccCCce
Confidence 33445567764 589999988752110 0 111111 134566655432 45689999999999
Q ss_pred EEEECCCCccCCCCCcceeEEecccC-CcEEEEEEecCCC-EEEe--eCCCcEEEEeCCC
Q 003171 216 MCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSG--SEGGGIKIWPWEA 271 (842)
Q Consensus 216 rlWdl~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L~Sg--S~DgtIrvWd~~t 271 (842)
|.|++.-. +..-.--.|+ .++..+..+..++ |.++ |.|.++|.|+++.
T Consensus 127 r~~n~~p~--------k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 127 RACNIKPN--------KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeeccccC--------ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 99998775 2222233455 5666665555555 5666 8889999998854
No 348
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=92.59 E-value=0.78 Score=42.20 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=43.4
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 204 ~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
.-|..||.|..||+|+-+. .+.... -++.|++|+-...++++-|-..|||.|++-
T Consensus 16 ~eLlvGs~D~~IRvf~~~e----------~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDE----------IVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred ceEEEecCCcEEEEEeCCc----------EEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 6789999999999998654 223322 256889998888888999999999999875
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.38 E-value=26 Score=40.63 Aligned_cols=61 Identities=20% Similarity=0.102 Sum_probs=38.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEE
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIW 267 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvW 267 (842)
....+..+|+|+.++. ..||...++..... +... .+.-...+|.+.++.+.-...++|++.
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~--------r~k~-----~G~g~~~vw~~~n~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAW--------RNKA-----FGSGLSFVWSSRNRYAVLESSSTIKIY 94 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTT--------EEEE-----EEE-SEEEE-TSSEEEEE-TTS-EEEE
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCC--------cccc-----cCceeEEEEecCccEEEEECCCeEEEE
Confidence 4678999999999988 66777777764332 2222 234456788888888877778899995
No 350
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.03 E-value=19 Score=38.34 Aligned_cols=61 Identities=20% Similarity=0.325 Sum_probs=41.3
Q ss_pred cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 141 TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 141 ~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
.++.|++|++.+|.++++...... +...+ ..+|.-+.+-|+-+.|+.= .|+.+.++++
T Consensus 6 ~~~~L~vGt~~Gl~~~~~~~~~~~--------------------~~i~~-~~~I~ql~vl~~~~~llvL-sd~~l~~~~L 63 (275)
T PF00780_consen 6 WGDRLLVGTEDGLYVYDLSDPSKP--------------------TRILK-LSSITQLSVLPELNLLLVL-SDGQLYVYDL 63 (275)
T ss_pred CCCEEEEEECCCEEEEEecCCccc--------------------eeEee-cceEEEEEEecccCEEEEE-cCCccEEEEc
Confidence 466899999999999998321111 11122 4458888888876666554 3599999998
Q ss_pred CCC
Q 003171 221 NAR 223 (842)
Q Consensus 221 ~~g 223 (842)
..-
T Consensus 64 ~~l 66 (275)
T PF00780_consen 64 DSL 66 (275)
T ss_pred hhh
Confidence 763
No 351
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.83 E-value=0.11 Score=61.72 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=60.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCC-cEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGG-GIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~Dg-tIrvW 267 (842)
+..-+|++|+.+.+.|+.|+..|.|+++++.+| ...-+..+|..+|+-|--+.||. |-|+++.. ..-+|
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--------~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--------SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred ccceeeEEeecCCceEEeeeccceEEEEEccCc--------cccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 567899999999999999999999999999998 45566789999999999999997 34444444 67899
Q ss_pred eCCC
Q 003171 268 PWEA 271 (842)
Q Consensus 268 d~~t 271 (842)
++..
T Consensus 1173 ~~~s 1176 (1516)
T KOG1832|consen 1173 DASS 1176 (1516)
T ss_pred cccc
Confidence 9854
No 352
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=91.71 E-value=0.36 Score=52.62 Aligned_cols=122 Identities=18% Similarity=0.154 Sum_probs=75.6
Q ss_pred HHhhhccCCCceEE-EeeeeceeeEEEEEEeccccCccCceee---ceeecccCcccCCCCeeEEEEEEeCeEEEEEeec
Q 003171 622 MIGKILDDGSTFER-VGSRQLAGLLIAVWVRKNLKDYVGDVDV---AAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCH 697 (842)
Q Consensus 622 ~l~~~l~~~~~y~~-v~s~~l~g~~l~vf~r~~~~~~i~~v~~---~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~H 697 (842)
.|++.+.....|.. ..|--| |-.|+||.|-.+..-.-+.-. ..-..=-|-..|-||---.++.+.+..+.+.|.|
T Consensus 58 ~L~~~~ss~yPysh~FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~~g~~v~~yntH 136 (422)
T KOG3873|consen 58 YLQSGCSSVYPYSHYFHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLVGGRMVNLYNTH 136 (422)
T ss_pred HHHHhccccCchHHhhhcccc-cCceEEeecCchhhhhhhccccCCccceeeeccccccceeEEEEEeeCCEEeeeeehh
Confidence 45554433344543 445555 888999999887533222111 0000111234578998888999999999999999
Q ss_pred CcCCc-----chHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCcccEEEEeccce
Q 003171 698 FAAHL-----EAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFN 772 (842)
Q Consensus 698 Laa~~-----~~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlN 772 (842)
|-|-- .-+-.|..+-.++-+-+.-- -...|.|+..||||
T Consensus 137 LHAeY~rq~D~YL~HR~~QAwdlaqfi~~t------------------------------------~q~~~vVI~~GDLN 180 (422)
T KOG3873|consen 137 LHAEYDRQNDEYLCHRVAQAWDLAQFIRAT------------------------------------RQNADVVILAGDLN 180 (422)
T ss_pred ccccccccCchhhhHHHHHHHHHHHHHHHH------------------------------------hcCCcEEEEecCCC
Confidence 97752 23455666665654433111 12479999999999
Q ss_pred eeecCCCh
Q 003171 773 YRLDGITY 780 (842)
Q Consensus 773 yRi~~~~~ 780 (842)
-+=..+++
T Consensus 181 ~~P~dl~~ 188 (422)
T KOG3873|consen 181 MQPQDLGH 188 (422)
T ss_pred CCccccce
Confidence 98765543
No 353
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.68 E-value=3.3 Score=49.96 Aligned_cols=127 Identities=16% Similarity=0.214 Sum_probs=75.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCE-EEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~ 269 (842)
..|+.+++++.+-+.||.|-.||.|....-+--. +...+......| ..+||+++|-.+|+. +-...-..|.++.+
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R---Drgsr~~~~~~~-~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l 200 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR---DRGSRQDYSHRG-KEPITGLALRSDGKSVLFVATTEQVMLYSL 200 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchh---ccccceeeeccC-CCCceeeEEecCCceeEEEEecceeEEEEe
Confidence 5689999999999999999999999877532110 000011111111 579999999999872 33333456888887
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEee
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~ 349 (842)
.+....+.. +.++ -....|..+++....+.++++..+.++|.......-+|.
T Consensus 201 ~gr~p~~~~------------------ld~~----------G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 201 SGRTPSLKV------------------LDNN----------GISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cCCCcceee------------------eccC----------CccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence 642211110 0001 112445555555555666666777888876555544554
No 354
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.57 E-value=40 Score=42.77 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=63.3
Q ss_pred EEEECCCCcEEEE-----eCC-CeEEEEcCCCCeeeeee--cCCccEEEEEecCCEEEEEe---cCcEEEEEeCCCc---
Q 003171 424 ALTTSIDGMIWTG-----GAN-GLLLQWDPNGNRLQDFQ--YLPFAVQCLCTFGSQIWVGY---MNGIVQVLDLEGN--- 489 (842)
Q Consensus 424 al~~s~dg~l~Sg-----s~D-gtIrlWD~~g~~l~~l~--~H~~~V~sls~dG~~LasGs---~DgtIrlWD~~g~--- 489 (842)
++.+-.||++++. -.+ ++||+||.+|.+-.+-. .......+-.|.|..+++-. +|+.|.++..+|-
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc
Confidence 3555567753322 224 78999999864321111 11222334457888888643 4678999997653
Q ss_pred -ccccccccccCEEEEEe--CCCEEEE---EcCCCCeeeccccCC
Q 003171 490 -LLGGWVAHSSPVIKMAV--GAGYIFT---LANHGGIRGWNVTSP 528 (842)
Q Consensus 490 -~i~~l~gH~~~V~sla~--dg~~l~S---~S~DgtIrvWd~~~~ 528 (842)
....+..-...|..|++ +++.|+. ......|++|-+.+|
T Consensus 280 ~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 280 EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 44455555556888887 4555553 444445999987765
No 355
>PTZ00297 pantothenate kinase; Provisional
Probab=91.56 E-value=1.9 Score=56.74 Aligned_cols=69 Identities=13% Similarity=0.077 Sum_probs=41.1
Q ss_pred eEEEEEEeccccCccCceeeceeec-ccCcccCCCCeeEEEEEEe----C-eEEEEEeecCcCCcchHHHHHHHHHHHHH
Q 003171 644 LLIAVWVRKNLKDYVGDVDVAAVPC-GFGRAIGNKGAVGLRVRVY----D-RIMCFVNCHFAAHLEAVNRRNADFDHVYR 717 (842)
Q Consensus 644 ~~l~vf~r~~~~~~i~~v~~~~v~~-G~~~~~gnKG~v~i~~~i~----~-~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~ 717 (842)
-.++|..|-.+.. .+.-..+. +.+-...+||.+-+.+.+. + ..+.|+|.||.+.... ..|.++.+.+.+
T Consensus 103 ~G~AILSR~PI~~----~~~~~l~~~~~~~~~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~-~~R~~Q~~ql~~ 177 (1452)
T PTZ00297 103 NGLIIASRFPIWQ----RGSYTFRNHERGEQSVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSL-PSTSSQVQETRR 177 (1452)
T ss_pred CEEEEEECCChhh----ceeeecCcccccccccccceEEEEEEccccCCCCceEEEEEeCCCCCCCc-chHHHHHHHHHH
Confidence 3456777776642 22222221 1222235899999999984 2 5899999999987543 224445555543
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=90.96 E-value=5.3 Score=49.15 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=49.6
Q ss_pred ceEEEEECCCCcEEEEeCCCeEEEEcCCCCeeee-eecCCccEEEEE--ecCCEEEEEecCcEEEEEeC
Q 003171 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQD-FQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 421 ~v~al~~s~dg~l~Sgs~DgtIrlWD~~g~~l~~-l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~ 486 (842)
.-.+++-+.+|.|+.||.+|.|||+|-.|..-++ |.+-..+|..|. .||++|++.+ +..|-|.|+
T Consensus 579 ~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 4567888899999999999999999986654444 335568898774 5899887754 667888885
No 357
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.81 E-value=0.5 Score=57.92 Aligned_cols=69 Identities=20% Similarity=0.427 Sum_probs=52.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEe---cCCC-EEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCIS---SYGD-LWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs---~dG~-L~SgS~DgtIrv 266 (842)
.++|.|++|+.+|+++..|..+|.|.+||+..+ +..+.+.-|..+++++-+. .++. ++++-..|. +
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--------k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f 199 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--------KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--F 199 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCC--------cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--e
Confidence 679999999999999999999999999999986 4555566666666666543 2333 667666664 7
Q ss_pred EeC
Q 003171 267 WPW 269 (842)
Q Consensus 267 Wd~ 269 (842)
|.+
T Consensus 200 ~~l 202 (1206)
T KOG2079|consen 200 WKL 202 (1206)
T ss_pred EEE
Confidence 775
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.72 E-value=0.81 Score=53.24 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=58.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEE-EEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVL-SLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~-slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..|.-+.++|.-.+||.+..+|.+-+..++- +.+-++.-|...|+ +++|.|||+ |+.|=.||+|++-|+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW---------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc---------ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 3577889999999999999999877776653 44555554555666 999999999 578999999999999
Q ss_pred CCcc
Q 003171 270 EAIE 273 (842)
Q Consensus 270 ~t~~ 273 (842)
+++.
T Consensus 92 e~~~ 95 (665)
T KOG4640|consen 92 EKGG 95 (665)
T ss_pred cCCC
Confidence 7653
No 359
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.17 E-value=0.53 Score=57.70 Aligned_cols=91 Identities=25% Similarity=0.314 Sum_probs=61.2
Q ss_pred EEEEeCCCeEEEEcCCCCeeeeee--cCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE--
Q 003171 433 IWTGGANGLLLQWDPNGNRLQDFQ--YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA-- 505 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~~g~~l~~l~--~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla-- 505 (842)
++.|+.-|.|-+.|.+|+.-.-.. .-.++|+|+++ +|++++.|-.+|.|.+||.. ++.++.+.-|..++.++.
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFV 181 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEE
Confidence 667777777888888765221111 12467888865 78899999899999999986 677887777777776654
Q ss_pred --e-CCCEEEEEcCCCCeeeccc
Q 003171 506 --V-GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 506 --~-dg~~l~S~S~DgtIrvWd~ 525 (842)
. ++..++++.+-|. +|.+
T Consensus 182 ~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 182 GRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEeCCCcEEEEccCCCc--eEEE
Confidence 2 3444666555554 6764
No 360
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.15 E-value=1.8 Score=51.88 Aligned_cols=68 Identities=21% Similarity=0.284 Sum_probs=58.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-cccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCC
Q 003171 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (842)
Q Consensus 194 V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (842)
+.++.|.|.--.|++|-.-|.+.+|...+ .+.++. .-|..+|..+.||++|. |+|+-.=|.|.+|..+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~---------~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNT---------TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCC---------ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 45689999888999999999999999877 344543 56999999999999998 8899999999999886
No 361
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=89.70 E-value=14 Score=39.08 Aligned_cols=76 Identities=16% Similarity=0.028 Sum_probs=52.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcce-eEEecccCCcEEEEEEecCCC--EEEeeC-CCcEEEEe
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGE-VLSWQAHRGPVLSLCISSYGD--LWSGSE-GGGIKIWP 268 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~-~~~l~gH~~~V~slafs~dG~--L~SgS~-DgtIrvWd 268 (842)
.=.|..|+......|++++||++-|||+..-. .+... ..+-..|.++|..+.|++.|. |+-=|+ =+.+.|-|
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~----tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA----TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccc----cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 45678889888999999999999999986531 11111 122235899999999999884 433232 35677777
Q ss_pred CCCc
Q 003171 269 WEAI 272 (842)
Q Consensus 269 ~~t~ 272 (842)
+.+.
T Consensus 281 ~R~~ 284 (344)
T KOG4532|consen 281 TRNY 284 (344)
T ss_pred cccC
Confidence 7664
No 362
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.57 E-value=0.25 Score=59.02 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=81.7
Q ss_pred cccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEE-EecCc-EEEEEeCC-
Q 003171 415 FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWV-GYMNG-IVQVLDLE- 487 (842)
Q Consensus 415 ~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~Las-Gs~Dg-tIrlWD~~- 487 (842)
|..+...-++++|+.+.. |+.|+-.|.|+++++ +|.......+|..+|+-+-| ||..+.+ ++... -..||++.
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence 344556677899988766 899999999999999 89888889999999999965 7885444 44343 67899986
Q ss_pred -CcccccccccccCEEEEEeCCC---EEE-EEcCCCCeeeccccCCCCCcchhhh
Q 003171 488 -GNLLGGWVAHSSPVIKMAVGAG---YIF-TLANHGGIRGWNVTSPGPLDSILCK 537 (842)
Q Consensus 488 -g~~i~~l~gH~~~V~sla~dg~---~l~-S~S~DgtIrvWd~~~~~~~d~~l~~ 537 (842)
+...+++.+- .++.+... .++ +.+ .-+.++|+++..+++.++..
T Consensus 1177 ~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~--d~a~~YDvqT~~~l~tylt~ 1225 (1516)
T KOG1832|consen 1177 TGGPRHSFDED----KAVKFSNSLQFRALGTEA--DDALLYDVQTCSPLQTYLTD 1225 (1516)
T ss_pred ccCcccccccc----ceeehhhhHHHHHhcccc--cceEEEecccCcHHHHhcCc
Confidence 5566666542 22333221 122 222 34678999998887775543
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=89.49 E-value=45 Score=38.28 Aligned_cols=49 Identities=12% Similarity=0.336 Sum_probs=37.9
Q ss_pred cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCC
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t 271 (842)
.|++++..+.. -....|.. +.|-++.|+.+-+|+.-..||+++++|+.+
T Consensus 62 ~I~iys~sG~l-------l~~i~w~~--~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSSSGKL-------LSSIPWDS--GRIVGMGWTDDEELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECCCCCE-------eEEEEECC--CCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence 48999887731 12234555 789999999987898888999999999864
No 364
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=89.01 E-value=1.6 Score=53.38 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=65.0
Q ss_pred cEEEEeCCCeEEEEcC--CCCeeeeeec----CCccEEEEEecCC-EEEEEecCcEEEEEeCCCcc-cccccccccCEEE
Q 003171 432 MIWTGGANGLLLQWDP--NGNRLQDFQY----LPFAVQCLCTFGS-QIWVGYMNGIVQVLDLEGNL-LGGWVAHSSPVIK 503 (842)
Q Consensus 432 ~l~Sgs~DgtIrlWD~--~g~~l~~l~~----H~~~V~sls~dG~-~LasGs~DgtIrlWD~~g~~-i~~l~gH~~~V~s 503 (842)
+.+.|-.++.|..||+ .|+.+..-.. ......|++..+. +||+|+.+|-|||+|.-|+. -..+.|-.++|..
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~ 623 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIG 623 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeE
Confidence 4677888888999999 4543322222 2344668887765 99999999999999976654 3345566789999
Q ss_pred EE--eCCCEEEEEcCCCCeeeccc
Q 003171 504 MA--VGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 504 la--~dg~~l~S~S~DgtIrvWd~ 525 (842)
|. .||++++.. .+.-+-+.+.
T Consensus 624 iDvt~DGkwilaT-c~tyLlLi~t 646 (794)
T PF08553_consen 624 IDVTADGKWILAT-CKTYLLLIDT 646 (794)
T ss_pred EEecCCCcEEEEe-ecceEEEEEE
Confidence 87 599987733 3445666653
No 365
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=88.99 E-value=1.1 Score=54.23 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=48.2
Q ss_pred EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEec---------CcEEEEEeCC
Q 003171 433 IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYM---------NGIVQVLDLE 487 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~---------DgtIrlWD~~ 487 (842)
+..|...|+|-+-|. +-+.++++..|++.|..+...|..|++++. |.-|+|||++
T Consensus 190 lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 190 LFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred EEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhh
Confidence 677888999999999 578999999999999999999998888774 5568999976
No 366
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=88.47 E-value=1.2 Score=34.41 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~ 222 (842)
.+.|.++.++|...+||.|+.||.|.+++++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45799999999999999999999999999843
No 367
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=87.59 E-value=3.3 Score=47.59 Aligned_cols=106 Identities=18% Similarity=0.135 Sum_probs=74.7
Q ss_pred EEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEE--EEEecCCEEEEEec-----------CcEEEEEeCC-
Q 003171 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYM-----------NGIVQVLDLE- 487 (842)
Q Consensus 424 al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~--sls~dG~~LasGs~-----------DgtIrlWD~~- 487 (842)
-+.+||-|+ |+|=+..| |.+|-. +-..++.|. |.+ |. .++|..+||++=+. ...|.|||+.
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 467999998 77877777 999998 556666664 543 34 45667789987442 2589999986
Q ss_pred Ccccccccc--cccCEEEEE---eCCCEEEEEcCCCCeeeccccCCCCCcc
Q 003171 488 GNLLGGWVA--HSSPVIKMA---VGAGYIFTLANHGGIRGWNVTSPGPLDS 533 (842)
Q Consensus 488 g~~i~~l~g--H~~~V~sla---~dg~~l~S~S~DgtIrvWd~~~~~~~d~ 533 (842)
|.+.++|.. -...+|.+. .|++++|-... .+|.|++..+..+++.
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~ 341 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK 341 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecc
Confidence 777777776 344566654 58899886665 5688888666555543
No 368
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=87.30 E-value=53 Score=36.47 Aligned_cols=106 Identities=11% Similarity=0.196 Sum_probs=53.3
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEE----------eeCCCcEEEEeCCCcccee--ecC
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS----------GSEGGGIKIWPWEAIEKAL--SLK 279 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S----------gS~DgtIrvWd~~t~~~~l--~~~ 279 (842)
+++.+.|.+++ +.+-... .+-.-.+++||||+ +++ |-..-.|.+||..+..... .+.
T Consensus 17 ~rv~viD~d~~--------k~lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP 86 (342)
T PF06433_consen 17 SRVYVIDADSG--------KLLGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIP 86 (342)
T ss_dssp EEEEEEETTTT--------EEEEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEET
T ss_pred ceEEEEECCCC--------cEEEEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecC
Confidence 36777777665 2222221 12223366899987 443 3345689999998753322 222
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEE--eC-CCcEEEEEccCCcEEEEeecCC
Q 003171 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS--AG-FLSFALWDARTRELLKVFNIDG 352 (842)
Q Consensus 280 ~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s--~s-~~tI~lWD~~tg~~l~~l~~~~ 352 (842)
+..+... + .....++.+.++..+.. .+ ...|.|-|+..++++..+...+
T Consensus 87 ~k~R~~~-~-----------------------~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG 138 (342)
T PF06433_consen 87 PKPRAQV-V-----------------------PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG 138 (342)
T ss_dssp TS-B--B-S-------------------------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS
T ss_pred Ccchhee-c-----------------------ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC
Confidence 1111100 0 01111233444544333 33 2478899999999888765544
No 369
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.22 E-value=68 Score=37.67 Aligned_cols=69 Identities=7% Similarity=0.078 Sum_probs=43.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC------cE--EEEEEecCCCEEEeeCCCcEEEEeCCCccc
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG------PV--LSLCISSYGDLWSGSEGGGIKIWPWEAIEK 274 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~------~V--~slafs~dG~L~SgS~DgtIrvWd~~t~~~ 274 (842)
++.|+.++.|+.+...|..+| +.+-+..-... .+ ..+++..+++++.++.|+.|.-.|.++++.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG--------~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~ 132 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG--------KVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQ 132 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC--------hhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCE
Confidence 467778888899998898887 23222211111 11 112222226788888999999999998876
Q ss_pred eeecC
Q 003171 275 ALSLK 279 (842)
Q Consensus 275 ~l~~~ 279 (842)
..+..
T Consensus 133 ~W~~~ 137 (488)
T cd00216 133 VWKFG 137 (488)
T ss_pred eeeec
Confidence 65543
No 370
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.83 E-value=13 Score=42.05 Aligned_cols=165 Identities=11% Similarity=0.104 Sum_probs=92.7
Q ss_pred eeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--cCCCCCcce-----eEEecccCCcEEEEEEecCCC-EEE
Q 003171 186 ESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL--LDSDDGFGE-----VLSWQAHRGPVLSLCISSYGD-LWS 257 (842)
Q Consensus 186 ~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~--~~~~~~~~~-----~~~l~gH~~~V~slafs~dG~-L~S 257 (842)
..+| .+||.|+.+.+.+..+.|....|.|.-|..+... .++.-.+.. +..+.--.+..+++.|+|+|. +.+
T Consensus 140 kklH-~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qist 218 (558)
T KOG0882|consen 140 KKLH-FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIST 218 (558)
T ss_pred cccc-cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccc
Confidence 3366 8999999999999999999999999999887421 000000000 001111235678999999997 667
Q ss_pred eeCCCcEEEEeCCCccceeecCCCc---eeeeEEEEeeceeecccceec-cceeeeecCCEEEEEEcCCCCEEEEeCCCc
Q 003171 258 GSEGGGIKIWPWEAIEKALSLKPEE---RHTAALIVERSYIDLRSHLSV-NGFSSILTSDIKNLLSDHSRAKVWSAGFLS 333 (842)
Q Consensus 258 gS~DgtIrvWd~~t~~~~l~~~~~~---~~~~~l~~~~s~~~l~~~~~~-~~~~~~~s~~v~~las~~~~~~v~s~s~~t 333 (842)
-+.|..||+.+..++.....+.... .......+.-..+.+.-...+ -..-...+....-..++.++..|.=++--+
T Consensus 219 l~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g 298 (558)
T KOG0882|consen 219 LNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG 298 (558)
T ss_pred cCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee
Confidence 7799999999998754321111000 000000000001111000000 000000011223345666666666666678
Q ss_pred EEEEEccCCcEEEEeecC
Q 003171 334 FALWDARTRELLKVFNID 351 (842)
Q Consensus 334 I~lWD~~tg~~l~~l~~~ 351 (842)
|++.++.|+.+.+.+..+
T Consensus 299 ikvin~~tn~v~ri~gk~ 316 (558)
T KOG0882|consen 299 IKVINLDTNTVVRILGKD 316 (558)
T ss_pred EEEEEeecCeEEEEeccc
Confidence 999999999998887543
No 371
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.47 E-value=3.2 Score=48.57 Aligned_cols=85 Identities=24% Similarity=0.243 Sum_probs=59.0
Q ss_pred EEEEECCCCc-EEEEeCCCeEEEEcCCCCeeeeeecCCccEE-EEE--ecCCEEEEEecCcEEEEEeCC-Ccccccc-cc
Q 003171 423 EALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQ-CLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGW-VA 496 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~-sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l-~g 496 (842)
.-+.++|.-- +|.+..+|.|-+...+-+++-++.-|...|+ +++ +||+.||+|-.||+|+|-|++ |..+..+ .-
T Consensus 24 ~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s 103 (665)
T KOG4640|consen 24 KRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFS 103 (665)
T ss_pred EEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccc
Confidence 3445666543 6888888888777777667777766666666 665 689999999999999999997 5444432 22
Q ss_pred cccCEEEEEeC
Q 003171 497 HSSPVIKMAVG 507 (842)
Q Consensus 497 H~~~V~sla~d 507 (842)
-...|.++.++
T Consensus 104 ~e~~is~~~w~ 114 (665)
T KOG4640|consen 104 VETDISKGIWD 114 (665)
T ss_pred cccchheeecc
Confidence 23445555444
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=86.33 E-value=36 Score=41.02 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=36.4
Q ss_pred EEEEECCCCcEEEEeCCCeEEEEcC--CCCeeeeeec--CCccEEEEEecCCEEEEEecCcEEEEE
Q 003171 423 EALTTSIDGMIWTGGANGLLLQWDP--NGNRLQDFQY--LPFAVQCLCTFGSQIWVGYMNGIVQVL 484 (842)
Q Consensus 423 ~al~~s~dg~l~Sgs~DgtIrlWD~--~g~~l~~l~~--H~~~V~sls~dG~~LasGs~DgtIrlW 484 (842)
.++.+..++.|+.+..++...+|-+ .|.....+.. ....|.+|+.....|+.+..++.+++=
T Consensus 500 ~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l~ 565 (591)
T PRK13616 500 VSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVLQLP 565 (591)
T ss_pred ccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceEEec
Confidence 3466777787776665554445554 5654333333 245677776655567777777755543
No 373
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=84.01 E-value=23 Score=38.84 Aligned_cols=66 Identities=23% Similarity=0.386 Sum_probs=43.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc----CCcEEEEEEecCCCEEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH----RGPVLSLCISSYGDLWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH----~~~V~slafs~dG~L~SgS~DgtIrv 266 (842)
.+.+..+..++||++|+.++.-...+-|+.... .|+.| ...|.+|.|+|++.||....+|.|+.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~------------~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~ 211 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT------------TWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQF 211 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S------------S-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCc------------cceEEccCccceehhceecCCCCEEEEeCCcEEEE
Confidence 456888888999999998877777788975432 23333 46899999999999988889998877
Q ss_pred Ee
Q 003171 267 WP 268 (842)
Q Consensus 267 Wd 268 (842)
=+
T Consensus 212 s~ 213 (302)
T PF14870_consen 212 SD 213 (302)
T ss_dssp EE
T ss_pred cc
Confidence 66
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.17 E-value=4.1 Score=46.77 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=61.7
Q ss_pred EEEeCCCeEEEEcC--CCC-eeeeeecCCc----cEEEEEecCC-EEEEEecCcEEEEEeCCCcc-cccccccccCEEEE
Q 003171 434 WTGGANGLLLQWDP--NGN-RLQDFQYLPF----AVQCLCTFGS-QIWVGYMNGIVQVLDLEGNL-LGGWVAHSSPVIKM 504 (842)
Q Consensus 434 ~Sgs~DgtIrlWD~--~g~-~l~~l~~H~~----~V~sls~dG~-~LasGs~DgtIrlWD~~g~~-i~~l~gH~~~V~sl 504 (842)
+.|=.|+.|..||+ .|+ .+..-++|.. .-.|++.-+. +|++||.+|-|||||.-+.. -..+.|-..+|..|
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeE
Confidence 45667888999998 454 4444444432 3457766554 99999999999999986654 34466777889887
Q ss_pred E--eCCCEEEEEcCCCCeeecc
Q 003171 505 A--VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 505 a--~dg~~l~S~S~DgtIrvWd 524 (842)
. .||++|+. ..+..+-+-+
T Consensus 478 dvtadGKwil~-Tc~tyLlLi~ 498 (644)
T KOG2395|consen 478 DVTADGKWILA-TCKTYLLLID 498 (644)
T ss_pred EeeccCcEEEE-ecccEEEEEE
Confidence 6 68998773 3355555544
No 375
>PRK02888 nitrous-oxide reductase; Validated
Probab=78.34 E-value=54 Score=39.34 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=41.1
Q ss_pred CceEEEEECCCCc-E-EEEeCCCeEEEEcC-CCCe------------eeeeecCCccEE-EEEecCCEEEEEecCcEEEE
Q 003171 420 RRTEALTTSIDGM-I-WTGGANGLLLQWDP-NGNR------------LQDFQYLPFAVQ-CLCTFGSQIWVGYMNGIVQV 483 (842)
Q Consensus 420 ~~v~al~~s~dg~-l-~Sgs~DgtIrlWD~-~g~~------------l~~l~~H~~~V~-sls~dG~~LasGs~DgtIrl 483 (842)
.....+.+||||+ + +++-.+.+|-+.|+ +.+. ..+...-.++.. .+..+|....+--.|..|-.
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~k 400 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVK 400 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEE
Confidence 3445688999998 4 45556889999999 4321 223222233322 23334444445556899999
Q ss_pred EeCC
Q 003171 484 LDLE 487 (842)
Q Consensus 484 WD~~ 487 (842)
||++
T Consensus 401 wn~~ 404 (635)
T PRK02888 401 WNIE 404 (635)
T ss_pred EehH
Confidence 9975
No 376
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=77.45 E-value=1.5e+02 Score=34.71 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=24.4
Q ss_pred EEecCCEEEEEecCcEEEEEeCC-Cccccccc
Q 003171 465 LCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 465 ls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (842)
+...|..|++|+.||.|..+|.+ |+.+-+..
T Consensus 402 ~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 402 LATAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred eEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 45678899999999999999986 77654443
No 377
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=75.92 E-value=3.2 Score=50.32 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=60.2
Q ss_pred EeCCCeEEEEcCCCCeeeeeecCCccEE-------------EEEecCCEEEEEecCcEEEEEeC--CCc----ccccccc
Q 003171 436 GGANGLLLQWDPNGNRLQDFQYLPFAVQ-------------CLCTFGSQIWVGYMNGIVQVLDL--EGN----LLGGWVA 496 (842)
Q Consensus 436 gs~DgtIrlWD~~g~~l~~l~~H~~~V~-------------sls~dG~~LasGs~DgtIrlWD~--~g~----~i~~l~g 496 (842)
+-.+++|++-..+......|.+|+.++. ++++||+.++.++.||.++.|.. .|+ |+..|+.
T Consensus 201 ~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkp 280 (1283)
T KOG1916|consen 201 GLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKP 280 (1283)
T ss_pred ccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCC
Confidence 4456677776664433355666776654 46789999999999999999984 453 7889999
Q ss_pred cc-cCEEEEEeC---------CC--EEEEE-cCCCCeeeccccC
Q 003171 497 HS-SPVIKMAVG---------AG--YIFTL-ANHGGIRGWNVTS 527 (842)
Q Consensus 497 H~-~~V~sla~d---------g~--~l~S~-S~DgtIrvWd~~~ 527 (842)
|+ .+-.|.-.+ +. .++++ .....+++|.-..
T Consensus 281 hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 281 HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 98 443333222 22 23343 3456799998443
No 378
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=74.31 E-value=1.2e+02 Score=32.05 Aligned_cols=62 Identities=10% Similarity=0.167 Sum_probs=40.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCc
Q 003171 201 EASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAI 272 (842)
Q Consensus 201 pdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~ 272 (842)
..++.|+.|+.+| +.+++..... ..... -+..+|..|...|+-.++-.=.|+++.++++...
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~-------~~~~i--~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l 66 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS-------KPTRI--LKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSL 66 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc-------cceeE--eecceEEEEEEecccCEEEEEcCCccEEEEchhh
Confidence 3678999999999 7788873321 12211 1234599999998765332223599999999763
No 379
>PRK02888 nitrous-oxide reductase; Validated
Probab=73.34 E-value=38 Score=40.57 Aligned_cols=33 Identities=9% Similarity=0.094 Sum_probs=26.3
Q ss_pred CcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccc
Q 003171 242 GPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEK 274 (842)
Q Consensus 242 ~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~ 274 (842)
.....|.+||||+ + +++..+.+|-|.|+++.+.
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 4556889999998 4 5777899999999977443
No 380
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.18 E-value=1.4e+02 Score=31.83 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=65.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc-CCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCC
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~ 280 (842)
..+++.||.-+.++.-|..+|. ..|+.- ...|-+-+.- -|+ ++-|...|.+.+-+..++++...+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~----------~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGN----------LIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred ceEEEEecCCceEEEecCCCCc----------EEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee
Confidence 3678888888888888877762 123221 1223222222 244 57888888888888877765443322
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCEEEE-EEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeec
Q 003171 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNL-LSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 281 ~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~l-as~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (842)
.+ .+++- ..+.+++.+|+++ |+++...|.++..++-..+-
T Consensus 92 ~~------------------------------~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 92 LE------------------------------TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred hh------------------------------hhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 11 11111 1345788999998 67899999998887655443
No 381
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.22 E-value=1.4e+02 Score=32.46 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=44.0
Q ss_pred EEcCCCCEEEEEeCC-----CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEE
Q 003171 198 VGDEASGVVWSGHRD-----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIW 267 (842)
Q Consensus 198 a~dpdg~~LaSGs~D-----GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvW 267 (842)
.|||||.+|+.--.| |.|-|+|...+ |+.+-.|.+|.=.-..|.+.+||+++.... |.|+.-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~-------fqrvgE~~t~GiGpHev~lm~DGrtlvvan-GGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG-------FQRVGEFSTHGIGPHEVTLMADGRTLVVAN-GGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc-------cceecccccCCcCcceeEEecCCcEEEEeC-Cceecc
Confidence 578999999876544 57889998765 466777888865567788999999554433 345443
No 382
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=68.26 E-value=12 Score=42.98 Aligned_cols=101 Identities=21% Similarity=0.286 Sum_probs=58.5
Q ss_pred EEEECCCCc-E-EEEeCCCeE--EEEcCCCCeeeeeecCCccE---EEEEecCCEEEEEec-CcE--EEEEeCCCcc--c
Q 003171 424 ALTTSIDGM-I-WTGGANGLL--LQWDPNGNRLQDFQYLPFAV---QCLCTFGSQIWVGYM-NGI--VQVLDLEGNL--L 491 (842)
Q Consensus 424 al~~s~dg~-l-~Sgs~DgtI--rlWD~~g~~l~~l~~H~~~V---~sls~dG~~LasGs~-Dgt--IrlWD~~g~~--i 491 (842)
+..|+|||+ | .+...||.. .+.|+.++.+..++ +...+ .++++||++|+-.+. .|. |.+.|.+|.. .
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 456899997 4 456667754 45577554444443 22222 367889998876664 454 4555677653 3
Q ss_pred ccccccccCEEEEEeCCCEEEEEcCCCCeeeccccC
Q 003171 492 GGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 492 ~~l~gH~~~V~sla~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.++.+-....-.+.+||++++-.+..++- |++..
T Consensus 321 iT~~~~~~~~p~~SpdG~~i~~~~~~~g~--~~i~~ 354 (425)
T COG0823 321 LTFSGGGNSNPVWSPDGDKIVFESSSGGQ--WDIDK 354 (425)
T ss_pred eeccCCCCcCccCCCCCCEEEEEeccCCc--eeeEE
Confidence 34444444444556899998865543222 55443
No 383
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=66.87 E-value=4.3 Score=49.30 Aligned_cols=90 Identities=17% Similarity=0.229 Sum_probs=59.2
Q ss_pred CeEEEEcC---CCCeeeeeec-----CCccEEE-----EEecCCEEEEEecCcEEEEEeCCCcccccccccccCEEE---
Q 003171 440 GLLLQWDP---NGNRLQDFQY-----LPFAVQC-----LCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIK--- 503 (842)
Q Consensus 440 gtIrlWD~---~g~~l~~l~~-----H~~~V~s-----ls~dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~s--- 503 (842)
|.+-+||+ +|+..-.+.. ..+.+.- +.+...++-.+-.+++|+|.+.+.....-+.+|.-++..
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~ 232 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAF 232 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHH
Confidence 35777876 4764443332 2222221 233445777788899999988764444556678766543
Q ss_pred ----------EEeCCCEEEEEcCCCCeeeccccCCC
Q 003171 504 ----------MAVGAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 504 ----------la~dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
|.+||+.+++++.||.++.|.+...+
T Consensus 233 ~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g 268 (1283)
T KOG1916|consen 233 FAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITG 268 (1283)
T ss_pred HhhchhhheeeCCCCcEEEEeecCCccceeeeeeec
Confidence 44699999999999999999865433
No 384
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=66.00 E-value=15 Score=28.37 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=25.7
Q ss_pred CCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 241 RGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 241 ~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
...|..++|+|... |+.|+.||.|.|+.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 45799999999988 578999999999988
No 385
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=65.46 E-value=2.4e+02 Score=31.96 Aligned_cols=67 Identities=10% Similarity=0.179 Sum_probs=34.3
Q ss_pred EcCCC-CEEEEEeCCCcEEEE--ECCCCccCCCCCcceeEEecccC-CcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcc
Q 003171 199 GDEAS-GVVWSGHRDGRIMCW--KMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 199 ~dpdg-~~LaSGs~DGtIrlW--dl~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~ 273 (842)
|.+|| ++|+.+..||.-.+| |++++ ++.+|..+. ........+++++ |+--..+..|+.-|+++++
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~---------~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATG---------EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT----------EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccC---------EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence 45566 677778888865555 67774 455554432 2122455677766 5444455677788887765
Q ss_pred c
Q 003171 274 K 274 (842)
Q Consensus 274 ~ 274 (842)
.
T Consensus 114 ~ 114 (386)
T PF14583_consen 114 E 114 (386)
T ss_dssp E
T ss_pred E
Confidence 4
No 386
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=64.71 E-value=69 Score=36.79 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=41.3
Q ss_pred eEEEEcCCCCeeeeeecCCccEEEEEec-CCEEEEEecCcEEEEEeCCCcc
Q 003171 441 LLLQWDPNGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNL 490 (842)
Q Consensus 441 tIrlWD~~g~~l~~l~~H~~~V~sls~d-G~~LasGs~DgtIrlWD~~g~~ 490 (842)
.|++++..|+.+.++.-..+.|.++... ...|++-..||+++++|+-|+.
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence 5999999999998876555788888774 5577777899999999997766
No 387
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=64.01 E-value=2.5e+02 Score=32.11 Aligned_cols=127 Identities=14% Similarity=0.148 Sum_probs=75.0
Q ss_pred cceEEecCCcEEEEeecCc-c-c----cCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCC-----eeeeeecC--Ccc
Q 003171 396 RNAIMGAADAVRRVAAKGG-F-G----DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGN-----RLQDFQYL--PFA 461 (842)
Q Consensus 396 ~~~~~g~~~~v~~v~~~g~-~-~----~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~-----~l~~l~~H--~~~ 461 (842)
...+.|....+++-+..|. + . .....+.++.+.++|.+|.++.+|.+ +|.. .|+ ........ ...
T Consensus 251 ~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~ 329 (398)
T PLN00033 251 DYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRGFG 329 (398)
T ss_pred CEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCCCcc
Confidence 3445555555555444332 1 2 12345678889999999888888865 4544 554 22332221 134
Q ss_pred EEEEEe-cCCEEEEEecCcEEEEEeCCCccccccc---ccccCEEEEEe-CCCEEEEEcCCCCeeec
Q 003171 462 VQCLCT-FGSQIWVGYMNGIVQVLDLEGNLLGGWV---AHSSPVIKMAV-GAGYIFTLANHGGIRGW 523 (842)
Q Consensus 462 V~sls~-dG~~LasGs~DgtIrlWD~~g~~i~~l~---gH~~~V~sla~-dg~~l~S~S~DgtIrvW 523 (842)
++++.+ +...+++++.+|.|....-.|+.-+... .-....+.+.+ +.+..+-.+.+|.|-.|
T Consensus 330 l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 330 ILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred eEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 777765 4556777788898888776665422222 22345778874 55666667778876554
No 388
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.10 E-value=67 Score=41.32 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=47.5
Q ss_pred CCceEEEEECCCCcEEEEeCCCeEEEEcC--C---C---C-eee----------------eee-cCCccEEEEEecCC--
Q 003171 419 NRRTEALTTSIDGMIWTGGANGLLLQWDP--N---G---N-RLQ----------------DFQ-YLPFAVQCLCTFGS-- 470 (842)
Q Consensus 419 ~~~v~al~~s~dg~l~Sgs~DgtIrlWD~--~---g---~-~l~----------------~l~-~H~~~V~sls~dG~-- 470 (842)
...|.+++...+|++.-++.|| .+|.+ + | + |-+ .+. .|.++|..+..|.+
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 4567788888999998888888 45643 1 1 1 111 111 46678888888754
Q ss_pred EEEEEecCcEEEEEeCC
Q 003171 471 QIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 471 ~LasGs~DgtIrlWD~~ 487 (842)
.+++=+..++|++||+.
T Consensus 256 IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred eeeeeccCceEEEEEcc
Confidence 77888899999999986
No 389
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=62.41 E-value=1.1e+02 Score=33.38 Aligned_cols=104 Identities=22% Similarity=0.208 Sum_probs=66.4
Q ss_pred ceEEEEECCCCcEEEEeCCCeEEEEcC-CCC-eeee-eecCCccEEEEEecCCEEEEEecCcEEEEE--eCCCccccccc
Q 003171 421 RTEALTTSIDGMIWTGGANGLLLQWDP-NGN-RLQD-FQYLPFAVQCLCTFGSQIWVGYMNGIVQVL--DLEGNLLGGWV 495 (842)
Q Consensus 421 ~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~-~l~~-l~~H~~~V~sls~dG~~LasGs~DgtIrlW--D~~g~~i~~l~ 495 (842)
.|.++..- +|+|+.+. ++.|.+|++ ..+ .+.. +......|.++...+.+|+.|..-..|.++ +.+++.+..+.
T Consensus 90 ~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va 167 (321)
T PF03178_consen 90 PVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVA 167 (321)
T ss_dssp -EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEE
T ss_pred cceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEE
Confidence 35555432 56666665 567999999 445 3322 222334788888889999999988888877 54444222222
Q ss_pred c--cccCEEEEE-e-CCCEEEEEcCCCCeeecccc
Q 003171 496 A--HSSPVIKMA-V-GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 496 g--H~~~V~sla-~-dg~~l~S~S~DgtIrvWd~~ 526 (842)
. ..-+|+++. . +++.++.+..+|.+.++...
T Consensus 168 ~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 168 RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 2 233466665 2 67789999999999998863
No 390
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=59.76 E-value=79 Score=36.68 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=52.8
Q ss_pred EEEECCCCcEEEEeCCCeEEEE-cCCCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCE
Q 003171 424 ALTTSIDGMIWTGGANGLLLQW-DPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV 501 (842)
Q Consensus 424 al~~s~dg~l~Sgs~DgtIrlW-D~~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V 501 (842)
..+|.+.+..++-...++|++. +.+.+..+.++. ...+..|.. |..|...+.+ .|.+||.+ ++.++..... +|
T Consensus 73 ~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~v 147 (443)
T PF04053_consen 73 SFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG-GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AV 147 (443)
T ss_dssp EEEE-TSSEEEEE-TTS-EEEEETTEE-TT------SS-EEEEE--SSSEEEEETT-EEEEE-TTT--EEEEESS---E-
T ss_pred EEEEecCccEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc-CcEEEEECCC-CEEEEEhhHcceeeEEecC--CC
Confidence 4667777888877778889996 445444444443 224555555 8877776544 89999997 6777777643 37
Q ss_pred EEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 502 IKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 502 ~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
..|.+ ++++++-.+ +.++.+++.
T Consensus 148 k~V~Ws~~g~~val~t-~~~i~il~~ 172 (443)
T PF04053_consen 148 KYVIWSDDGELVALVT-KDSIYILKY 172 (443)
T ss_dssp EEEEE-TTSSEEEEE--S-SEEEEEE
T ss_pred cEEEEECCCCEEEEEe-CCeEEEEEe
Confidence 77776 466766555 446777663
No 391
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=59.65 E-value=4.8e+02 Score=33.43 Aligned_cols=106 Identities=11% Similarity=0.080 Sum_probs=65.7
Q ss_pred EEEEECCCCcE-EEEeC---C---CeEEEEcCCCCeeeeeecCC--ccEEEEEecCCEEEEEec---CcEEEEEeCCCcc
Q 003171 423 EALTTSIDGMI-WTGGA---N---GLLLQWDPNGNRLQDFQYLP--FAVQCLCTFGSQIWVGYM---NGIVQVLDLEGNL 490 (842)
Q Consensus 423 ~al~~s~dg~l-~Sgs~---D---gtIrlWD~~g~~l~~l~~H~--~~V~sls~dG~~LasGs~---DgtIrlWD~~g~~ 490 (842)
..+.+-.||.. ++.+- . ..||+|+-+|+...+-..-. ....+-.|.|..||+.-. ...|..|..+|-.
T Consensus 213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr 292 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR 292 (928)
T ss_pred eEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE
Confidence 35667778873 43332 2 57999999987544433111 112233578999998764 4578888877643
Q ss_pred cc----cccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCC
Q 003171 491 LG----GWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 491 i~----~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
.. .+......|..|.+ |++.|+-.-.| .|.+|-..+|.
T Consensus 293 hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYH 336 (928)
T PF04762_consen 293 HGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYH 336 (928)
T ss_pred eeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCE
Confidence 33 33344567888886 66666654444 49999876653
No 392
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=58.09 E-value=45 Score=38.28 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=34.0
Q ss_pred CCEEEEEecCcEEEEEeCCCcccccccccccCEEEEEe
Q 003171 469 GSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV 506 (842)
Q Consensus 469 G~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~ 506 (842)
...|++|..+|.|+++...|.++..-.-|.++|..|..
T Consensus 79 w~~I~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~ 116 (415)
T PF14655_consen 79 WTCIAVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKC 116 (415)
T ss_pred cEEEEEEecccEEEEEeccchHHHHHhcCccceEEEEe
Confidence 45899999999999999999988888889999999873
No 393
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=57.01 E-value=2.3e+02 Score=32.67 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=15.7
Q ss_pred ceEEEEECCCCc-EEEEe-CCCeEEEEcCC
Q 003171 421 RTEALTTSIDGM-IWTGG-ANGLLLQWDPN 448 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs-~DgtIrlWD~~ 448 (842)
-++.+.+|.|.+ |+..+ .+|.||.||++
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 456677888887 55444 68899999984
No 394
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=55.36 E-value=80 Score=36.06 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=49.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEE--ecc------cCCcEEEEEEe-----cCCC---
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS--WQA------HRGPVLSLCIS-----SYGD--- 254 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~--l~g------H~~~V~slafs-----~dG~--- 254 (842)
.++|.+++.| |=+.+|.|+.+|++.|-|+.+. .-+.. +.. ....|+++.|+ .|+.
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGP--------avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGP--------AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTT--------EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCC--------eEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 6899999998 7789999999999999999765 22222 222 24578999887 2342
Q ss_pred -EEEeeCCCcEEEEeC
Q 003171 255 -LWSGSEGGGIKIWPW 269 (842)
Q Consensus 255 -L~SgS~DgtIrvWd~ 269 (842)
|+.|...|.+.++.+
T Consensus 157 ~L~vGTn~G~v~~fkI 172 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKI 172 (395)
T ss_dssp EEEEEETTSEEEEEEE
T ss_pred EEEEEeCCCCEEEEEE
Confidence 678888899988876
No 395
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.21 E-value=3.1e+02 Score=31.72 Aligned_cols=131 Identities=11% Similarity=0.056 Sum_probs=76.2
Q ss_pred eeecCCCCCccccCceeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEE
Q 003171 119 LEVKPHPLRETQIGCFLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCM 197 (842)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~l 197 (842)
.++-|||.+--.+...---.-.+ +++|++-..+++-=|-..... .|.+ ..| .+.. .++|.++
T Consensus 10 helihhPslfcnipesngvFfDDaNkqlfavrSggatgvvvkgpn--------------dDVp-iSf-dm~d-~G~I~SI 72 (657)
T KOG2377|consen 10 HELIHHPSLFCNIPESNGVFFDDANKQLFAVRSGGATGVVVKGPN--------------DDVP-ISF-DMDD-KGEIKSI 72 (657)
T ss_pred EEEecCchhhccCCcccceeeccCcceEEEEecCCeeEEEEeCCC--------------CCCC-cee-eecC-CCceeEE
Confidence 56777885543332211111122 448887767777777654211 1111 112 2233 6799999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCC
Q 003171 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 198 a~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t 271 (842)
.||+|.+.||.--.|.+|...+..... ......++-+.-+..|...+|+.+..++--+ +..+.++....
T Consensus 73 kFSlDnkilAVQR~~~~v~f~nf~~d~----~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~-~~G~e~y~v~p 141 (657)
T KOG2377|consen 73 KFSLDNKILAVQRTSKTVDFCNFIPDN----SQLEYTQECKTKNANILGFCWTSSTEIAFIT-DQGIEFYQVLP 141 (657)
T ss_pred EeccCcceEEEEecCceEEEEecCCCc----hhhHHHHHhccCcceeEEEEEecCeeEEEEe-cCCeEEEEEch
Confidence 999999999999999999999875531 1111122223335568888888776655433 33466666543
No 396
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.86 E-value=36 Score=39.50 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=49.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
.-.|.+-- ..++|+.||.+|.||++|-... +.-..+.|-..+|..|..+.||+.+-|.-+.++-|-++
T Consensus 432 nFsc~aTT-~sG~IvvgS~~GdIRLYdri~~--------~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 432 NFSCFATT-ESGYIVVGSLKGDIRLYDRIGR--------RAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred ccceeeec-CCceEEEeecCCcEEeehhhhh--------hhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 34566554 4578999999999999997332 22233566678999999999999555555777777665
No 397
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.32 E-value=69 Score=33.36 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=45.1
Q ss_pred eEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeee------eecCCCeEEEEEcCCCCEEE
Q 003171 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKES------VKGVSSVMCMVGDEASGVVW 207 (842)
Q Consensus 135 ~~~l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~V~~la~dpdg~~La 207 (842)
+..+.+.+..|.+ ..+|.+++||+.+....-.. ...+|.... .. ...|..+.++.+|--|+
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~-----------~Si~pll~~~~~~~~~~-~~~i~~~~lt~~G~PiV 82 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPP-----------VSIAPLLNSSPVSDKSS-SPNITSCSLTSNGVPIV 82 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCC-----------ccHHHHhcccccccCCC-CCcEEEEEEcCCCCEEE
Confidence 4456677775554 78999999999876543210 111221110 11 45677888887777666
Q ss_pred EEeCCCcEEEEECCC
Q 003171 208 SGHRDGRIMCWKMNA 222 (842)
Q Consensus 208 SGs~DGtIrlWdl~~ 222 (842)
+=+ +|....|+.+-
T Consensus 83 ~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 83 TLS-NGDSYSYSPDL 96 (219)
T ss_pred EEe-CCCEEEecccc
Confidence 644 46777787543
No 398
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=50.87 E-value=4.3e+02 Score=30.20 Aligned_cols=79 Identities=23% Similarity=0.272 Sum_probs=53.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc----------C---------------------CC----CCcceeEEe
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL----------D---------------------SD----DGFGEVLSW 237 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~----------~---------------------~~----~~~~~~~~l 237 (842)
.|.++.+.++..-|+.|...|.|.+|....... + .. ..|.....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 478888999889999999999998886432210 0 00 112333334
Q ss_pred cccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCC
Q 003171 238 QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 238 ~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t 271 (842)
+..+++|++++.|.-|-++.|.++|++-|-|+.+
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RG 116 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRG 116 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTT
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCC
Confidence 5568999999999888889999999999999965
No 399
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=49.84 E-value=43 Score=25.45 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCC
Q 003171 192 SSVMCMVGDEASG---VVWSGHRDGRIMCWKMNAR 223 (842)
Q Consensus 192 ~~V~~la~dpdg~---~LaSGs~DGtIrlWdl~~g 223 (842)
++|.|+.|+|+.. +|+-.-.-|.|-++|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4789999998554 7777777789999998753
No 400
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=49.56 E-value=32 Score=22.36 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=16.9
Q ss_pred CCcEEEEEEecCCCEEEeeCC
Q 003171 241 RGPVLSLCISSYGDLWSGSEG 261 (842)
Q Consensus 241 ~~~V~slafs~dG~L~SgS~D 261 (842)
...|++|..+++|.||.|+.+
T Consensus 4 ~n~I~~i~~D~~G~lWigT~~ 24 (24)
T PF07494_consen 4 NNNIYSIYEDSDGNLWIGTYN 24 (24)
T ss_dssp SSCEEEEEE-TTSCEEEEETS
T ss_pred CCeEEEEEEcCCcCEEEEeCC
Confidence 457999999999999988753
No 401
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=48.94 E-value=1.6e+02 Score=32.23 Aligned_cols=116 Identities=11% Similarity=0.091 Sum_probs=72.0
Q ss_pred CccccCceeEEEEecCCEEEEecCCCEEEEeCCCCc-cccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCE
Q 003171 127 RETQIGCFLRTIVCTEEQLWAGGENGLRVWNLKELY-DESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGV 205 (842)
Q Consensus 127 ~~~~~~~~~~~l~~~~~~l~~~~D~~vrvWdl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~ 205 (842)
-+......+.+|+.-++.|.++..+.|.+|++.... .... .+ .+....|.++... +.+
T Consensus 83 ~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~----------------~~---~~~~~~i~sl~~~--~~~ 141 (321)
T PF03178_consen 83 HSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKK----------------AF---YDSPFYITSLSVF--KNY 141 (321)
T ss_dssp EEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEE----------------EE---E-BSSSEEEEEEE--TTE
T ss_pred EEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhh----------------he---ecceEEEEEEecc--ccE
Confidence 344455667788877888999999999999996543 1100 01 1113356666654 568
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcceeEEe--cccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCC
Q 003171 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (842)
Q Consensus 206 LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (842)
|+.|.....+-++...... .....+ ......|+++.|-++++ ++.+..+|.|.++...
T Consensus 142 I~vgD~~~sv~~~~~~~~~-------~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 142 ILVGDAMKSVSLLRYDEEN-------NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEESSSSEEEEEEETTT-------E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEcccCEEEEEEEccC-------CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 9999887777766443310 112111 12345699999986665 7889999999998874
No 402
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.86 E-value=6.6 Score=43.76 Aligned_cols=17 Identities=53% Similarity=0.972 Sum_probs=15.1
Q ss_pred cCcccEEEEeccceeee
Q 003171 759 LSEADMVIFLGDFNYRL 775 (842)
Q Consensus 759 ~~~~d~vf~~GDlNyRi 775 (842)
|..+++|||=||||||=
T Consensus 349 L~~S~LvIFKGDLNYRK 365 (434)
T KOG3870|consen 349 LQKSSLVIFKGDLNYRK 365 (434)
T ss_pred HhhCcEEEEeccccHHH
Confidence 56789999999999993
No 403
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=46.26 E-value=1.1e+02 Score=35.31 Aligned_cols=76 Identities=11% Similarity=0.088 Sum_probs=52.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEE----ecC-----------C--
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI----SSY-----------G-- 253 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slaf----s~d-----------G-- 253 (842)
...+.++..+|.+++.|....=|.|-++|+.++ ..++.|+|-+++=.+-.. ... .
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~--------~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARG--------IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCC--------hhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 345889999999999888777789999999987 556678877654222111 111 0
Q ss_pred -C-EE-EeeCCCcEEEEeCCCccc
Q 003171 254 -D-LW-SGSEGGGIKIWPWEAIEK 274 (842)
Q Consensus 254 -~-L~-SgS~DgtIrvWd~~t~~~ 274 (842)
. |+ =+-.-|.|.||.+.++.+
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPR 402 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCE
Confidence 1 22 466788999999876543
No 404
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.13 E-value=1.2e+02 Score=31.46 Aligned_cols=73 Identities=12% Similarity=0.130 Sum_probs=48.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCC-CcceeEEec-------ccCCcEEEEEEecCCC-EEEeeCCC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDD-GFGEVLSWQ-------AHRGPVLSLCISSYGD-LWSGSEGG 262 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~-~~~~~~~l~-------gH~~~V~slafs~dG~-L~SgS~Dg 262 (842)
+++..+.. .+.+|..-+.+|.+.+||+.++.+-... .+..+ +. .....|.++.++.+|. |++-|. |
T Consensus 13 s~~~~l~~--~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl--l~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g 87 (219)
T PF07569_consen 13 SPVSFLEC--NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL--LNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-G 87 (219)
T ss_pred CceEEEEe--CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHH--hcccccccCCCCCcEEEEEEcCCCCEEEEEeC-C
Confidence 45555554 5788999999999999999986320000 00000 11 3567899999999998 555553 5
Q ss_pred cEEEEeC
Q 003171 263 GIKIWPW 269 (842)
Q Consensus 263 tIrvWd~ 269 (842)
....|+.
T Consensus 88 ~~y~y~~ 94 (219)
T PF07569_consen 88 DSYSYSP 94 (219)
T ss_pred CEEEecc
Confidence 6778876
No 405
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=42.71 E-value=4.6e+02 Score=28.20 Aligned_cols=79 Identities=15% Similarity=0.093 Sum_probs=45.6
Q ss_pred CcEEEEEEecCCCEE-EeeCCC--cEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEE
Q 003171 242 GPVLSLCISSYGDLW-SGSEGG--GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL 318 (842)
Q Consensus 242 ~~V~slafs~dG~L~-SgS~Dg--tIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~la 318 (842)
.-...+.|..+|.|+ |.+.-| .||.+|+.+++...+..... ...-.| ++
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-----------------~~FgEG-----------it 96 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-----------------RYFGEG-----------IT 96 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-----------------T--EEE-----------EE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-----------------ccccee-----------EE
Confidence 345678887888876 555444 89999998865322111110 001111 11
Q ss_pred EcCCCCEEEEeCC--CcEEEEEccCCcEEEEeec
Q 003171 319 SDHSRAKVWSAGF--LSFALWDARTRELLKVFNI 350 (842)
Q Consensus 319 s~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~~ 350 (842)
. -+.+||--++ +...+||..|-+.+++|..
T Consensus 97 ~--~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y 128 (264)
T PF05096_consen 97 I--LGDKLYQLTWKEGTGFVYDPNTLKKIGTFPY 128 (264)
T ss_dssp E--ETTEEEEEESSSSEEEEEETTTTEEEEEEE-
T ss_pred E--ECCEEEEEEecCCeEEEEccccceEEEEEec
Confidence 1 1456777776 4678999998888777653
No 406
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=41.07 E-value=48 Score=39.50 Aligned_cols=31 Identities=10% Similarity=0.278 Sum_probs=23.9
Q ss_pred CeEEEEEcC----CCCEEEEEeCCCcEEEEECCCC
Q 003171 193 SVMCMVGDE----ASGVVWSGHRDGRIMCWKMNAR 223 (842)
Q Consensus 193 ~V~~la~dp----dg~~LaSGs~DGtIrlWdl~~g 223 (842)
.+.+++++. +..+|++-+.|+++|+||+.++
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~ 250 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETG 250 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCC
Confidence 445555555 6789999999999999999997
No 407
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=40.60 E-value=4.6e+02 Score=28.44 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=15.0
Q ss_pred EEEECCCCcEEEEeCCCeEEEEcCC
Q 003171 424 ALTTSIDGMIWTGGANGLLLQWDPN 448 (842)
Q Consensus 424 al~~s~dg~l~Sgs~DgtIrlWD~~ 448 (842)
.+...|||..|..-....|...|.+
T Consensus 108 giv~gpdg~~Witd~~~aI~R~dpk 132 (353)
T COG4257 108 GIVVGPDGSAWITDTGLAIGRLDPK 132 (353)
T ss_pred eEEECCCCCeeEecCcceeEEecCc
Confidence 3556677777765444356666663
No 408
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=40.21 E-value=1.8e+02 Score=30.64 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=53.4
Q ss_pred EEECCCCc-E-EEEeCCCeEEEEc--C-CCC-----eeeeeec-----CCcc-EEEEEecCCEEEEEecCcEEEEEeCC-
Q 003171 425 LTTSIDGM-I-WTGGANGLLLQWD--P-NGN-----RLQDFQY-----LPFA-VQCLCTFGSQIWVGYMNGIVQVLDLE- 487 (842)
Q Consensus 425 l~~s~dg~-l-~Sgs~DgtIrlWD--~-~g~-----~l~~l~~-----H~~~-V~sls~dG~~LasGs~DgtIrlWD~~- 487 (842)
++++.|-+ + ++-+.+-+|.-|| . +|. .+-.++. |..+ =++|..+|...++.-..++|...|+.
T Consensus 163 l~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t 242 (310)
T KOG4499|consen 163 LAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT 242 (310)
T ss_pred ccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCC
Confidence 45554544 2 4566677787787 3 442 1222221 1100 12333345555555678899999986
Q ss_pred CcccccccccccCEEEEEeCCC
Q 003171 488 GNLLGGWVAHSSPVIKMAVGAG 509 (842)
Q Consensus 488 g~~i~~l~gH~~~V~sla~dg~ 509 (842)
|+++..++..+..|+|.++.|.
T Consensus 243 GK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 243 GKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CcEEEEEEcCCCceEEEEecCC
Confidence 9999999999999999998776
No 409
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=39.40 E-value=6.1e+02 Score=28.64 Aligned_cols=69 Identities=7% Similarity=0.176 Sum_probs=48.7
Q ss_pred CeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCccCCCCCcceeEEe-cccCCcEEEEEEecCCC-EE-EeeCCCcEEE
Q 003171 193 SVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LW-SGSEGGGIKI 266 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~---DGtIrlWdl~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~-SgS~DgtIrv 266 (842)
....++++|+++.++.+.. ++++-+-|..+. ..+.+. .| ..+ ..++++|+|. ++ +-+.+++|-+
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~--------~~~~~~~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN--------KVTATIPVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSV 186 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCC--------eEEEEEecC-CCc-ceEEECCCCCeEEEEecCCCeEEE
Confidence 3456899999988888877 567766676664 333332 22 234 8899999998 55 5557899999
Q ss_pred EeCCC
Q 003171 267 WPWEA 271 (842)
Q Consensus 267 Wd~~t 271 (842)
-|..+
T Consensus 187 i~~~~ 191 (381)
T COG3391 187 IDTSG 191 (381)
T ss_pred EeCCC
Confidence 99755
No 410
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=39.32 E-value=55 Score=39.37 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=47.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t 271 (842)
-++++.-.|.|+-+++|++||+|++++.... .....+. -..|-..+.|..-| |+++..|..+--|.-++
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r--------~qski~~-~~~p~~nlv~tnhg-l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPR--------RQSKICE-EAKPKENLVFTNHG-LVTATSDRRALAWKEDG 84 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeeccc--------chhhhhh-hcCCccceeeeccc-eEEEeccchhheeeccC
Confidence 4667777899999999999999999997664 1111111 12344456676655 67777787777886554
No 411
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=39.31 E-value=2.1e+02 Score=35.22 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=67.2
Q ss_pred ecCCCEEEEeCCCCcccccccccc--ccCCCCCCCCCC-eeeeeecCCCeEEEEEc--CCCCEEEEEeCCCcEEEEECCC
Q 003171 148 GGENGLRVWNLKELYDESESDSVS--VSKSKGEDGTAP-FKESVKGVSSVMCMVGD--EASGVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~g~~~V~~la~d--pdg~~LaSGs~DGtIrlWdl~~ 222 (842)
..||.|-+|..++........+.. .+.++ ....| |...+ ..+++.|++. ...++||.++.-..|-|+-...
T Consensus 121 ~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r--~~i~P~f~~~v--~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l 196 (717)
T PF08728_consen 121 TDDGDVLAYYTETIIEAIERFSEDNDSGFSR--LKIKPFFHLRV--GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL 196 (717)
T ss_pred ecCCeEEEEEHHHHHHHHHhhcccccccccc--ccCCCCeEeec--CCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence 568999999875432110000000 00001 22234 44433 4578899998 7889999999999999987655
Q ss_pred CccCCCCCcceeEEecccCCcEEEEEEecC-----CC--EEEeeCCCcEEEEeC
Q 003171 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSY-----GD--LWSGSEGGGIKIWPW 269 (842)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~d-----G~--L~SgS~DgtIrvWd~ 269 (842)
.. .++..... ..|...|-+|+|-++ |. +++++-.|.+-+|++
T Consensus 197 ~~----~r~~~~~s-~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 197 VD----ERFYHVPS-HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cc----cccccccc-cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 21 11111111 125667999999765 32 567888998888876
No 412
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=39.26 E-value=1.4e+02 Score=33.31 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=43.3
Q ss_pred EEEcCCCCEEEEEe--------CCCc--EEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEee-CCCc
Q 003171 197 MVGDEASGVVWSGH--------RDGR--IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGS-EGGG 263 (842)
Q Consensus 197 la~dpdg~~LaSGs--------~DGt--IrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS-~Dgt 263 (842)
+++++..+.|+.-. +|+- |=++|+.++ +.+..+.. ..++.+|+.+.+.+ |++.+ .+++
T Consensus 243 ~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~--------krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~ 313 (342)
T PF06433_consen 243 IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH--------KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT 313 (342)
T ss_dssp EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT--------EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE
T ss_pred eeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC--------eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe
Confidence 56666666666543 3333 444567775 45555432 23688999999887 55544 5899
Q ss_pred EEEEeCCCccc
Q 003171 264 IKIWPWEAIEK 274 (842)
Q Consensus 264 IrvWd~~t~~~ 274 (842)
|.+||..+++.
T Consensus 314 l~v~D~~tGk~ 324 (342)
T PF06433_consen 314 LDVYDAATGKL 324 (342)
T ss_dssp EEEEETTT--E
T ss_pred EEEEeCcCCcE
Confidence 99999988653
No 413
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=38.99 E-value=5.2e+02 Score=27.79 Aligned_cols=105 Identities=16% Similarity=0.219 Sum_probs=62.2
Q ss_pred eEEEEECCCCcEE-EEeCCC--eEEEEcC-CCCeeeeeecCC-ccEEEEEecCCEEEE-EecCcEEEEEeCC-Ccccccc
Q 003171 422 TEALTTSIDGMIW-TGGANG--LLLQWDP-NGNRLQDFQYLP-FAVQCLCTFGSQIWV-GYMNGIVQVLDLE-GNLLGGW 494 (842)
Q Consensus 422 v~al~~s~dg~l~-Sgs~Dg--tIrlWD~-~g~~l~~l~~H~-~~V~sls~dG~~Las-Gs~DgtIrlWD~~-g~~i~~l 494 (842)
...+.+..+|.|+ |.+.-| .|+.+|+ +|+.++...... .-=-.+..-+..|+- .-.++..-+||.+ -+.+.++
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE
Confidence 3456676777865 444444 7999999 787765544322 111234555665554 4579999999987 3556665
Q ss_pred cccccCEEEEEeCCCEEEEEcCCCCeeeccccC
Q 003171 495 VAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 495 ~gH~~~V~sla~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.- .+.=|.|+.|++.|+.......+..+|..+
T Consensus 127 ~y-~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 127 PY-PGEGWGLTSDGKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp E--SSS--EEEECSSCEEEE-SSSEEEEE-TTT
T ss_pred ec-CCcceEEEcCCCEEEEECCccceEEECCcc
Confidence 43 345688888888777554455677766443
No 414
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.99 E-value=5.5e+02 Score=31.86 Aligned_cols=78 Identities=6% Similarity=0.070 Sum_probs=50.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEE-----EECCCCccCCCCCcceeEEe--------cccCCcEEEEEEecCC----CE
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMC-----WKMNARLLDSDDGFGEVLSW--------QAHRGPVLSLCISSYG----DL 255 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrl-----Wdl~~g~~~~~~~~~~~~~l--------~gH~~~V~slafs~dG----~L 255 (842)
.|.-+.++|.|++|+-.+..|.+.+ |-..+.. ++...-..+++. ..+...|..+.|+|.+ .|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~-~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEF-EDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccc-cCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4778899999999999888885543 3211100 000010112222 2445689999999975 38
Q ss_pred EEeeCCCcEEEEeCCC
Q 003171 256 WSGSEGGGIKIWPWEA 271 (842)
Q Consensus 256 ~SgS~DgtIrvWd~~t 271 (842)
+.=..|+++|++|+..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 8888899999999954
No 415
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=37.95 E-value=82 Score=33.08 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=36.8
Q ss_pred EECCCCcEEEEe-CCCeEEEEcC-CCCeeeeeecCCccEEEEEecCC
Q 003171 426 TTSIDGMIWTGG-ANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGS 470 (842)
Q Consensus 426 ~~s~dg~l~Sgs-~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~ 470 (842)
++..+|.|+.++ .-++|...|+ +|+.+++++..+..|+|.++-|+
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 345577877666 4468999999 89999999999999999999886
No 416
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=37.67 E-value=74 Score=21.69 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=17.6
Q ss_pred cEEEEEecCCEEEEEecCcEEEEE
Q 003171 461 AVQCLCTFGSQIWVGYMNGIVQVL 484 (842)
Q Consensus 461 ~V~sls~dG~~LasGs~DgtIrlW 484 (842)
.|.+++....+++++++-+.+|+|
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEec
Confidence 466777766777777777777776
No 417
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=36.31 E-value=6.3e+02 Score=27.89 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=43.0
Q ss_pred EEEeCCCeEEEEcCCCCeeeeeecCCccEE-----EEEe------cCCEEEEEecCcEEEEEeCC-Cccccccccccc
Q 003171 434 WTGGANGLLLQWDPNGNRLQDFQYLPFAVQ-----CLCT------FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS 499 (842)
Q Consensus 434 ~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~-----sls~------dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~ 499 (842)
+.|..-|-|-++|++|+.++.+. +....+ .+++ .|..|+----||+|..+|.. |+.+..+....+
T Consensus 216 v~G~G~G~VdvFd~~G~l~~r~a-s~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 216 VAGAGLGYVNVFTLNGQLLRRVA-SSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred ccCCCcceEEEEcCCCcEEEEec-cCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCC
Confidence 34556688999999999999884 333333 3333 34455443359999999975 777666655443
No 418
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.28 E-value=1.8e+02 Score=37.71 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=28.4
Q ss_pred ccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 239 AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 239 gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
+|..+|..|+++..-. |++=++-++|++|++..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 6788999999987655 68999999999999965
No 419
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=35.99 E-value=3.2e+02 Score=30.23 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=37.1
Q ss_pred ceEEEEECCCCcEEEEeCCCeEEEEcCCCCe---eeee----ecCCccEEEEEecC-----CEEEEEec
Q 003171 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNR---LQDF----QYLPFAVQCLCTFG-----SQIWVGYM 477 (842)
Q Consensus 421 ~v~al~~s~dg~l~Sgs~DgtIrlWD~~g~~---l~~l----~~H~~~V~sls~dG-----~~LasGs~ 477 (842)
...++++.|||.++.+-..|.|++.+.+|.. +..+ .........++++. .+|+..+.
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 3567899999999888889999999965543 2222 12334566777654 46666554
No 420
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=35.50 E-value=1.3e+02 Score=35.88 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=20.5
Q ss_pred CCEEEeeCCCcEEEEeCCCccceeec
Q 003171 253 GDLWSGSEGGGIKIWPWEAIEKALSL 278 (842)
Q Consensus 253 G~L~SgS~DgtIrvWd~~t~~~~l~~ 278 (842)
+.++.++.||.++.+|.+|++...+.
T Consensus 473 ~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 473 DLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred cEEEEECCCCeEEEEECCCCCEeEEE
Confidence 44568888999999999998766544
No 421
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=34.82 E-value=18 Score=42.66 Aligned_cols=96 Identities=15% Similarity=0.344 Sum_probs=57.9
Q ss_pred cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeee-eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003171 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE-SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (842)
Q Consensus 149 ~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~ 227 (842)
.|..+.+||+.+...... + ...|.. .+. .+.++.+.-+-++|.+|..-..+++.|+....
T Consensus 127 nds~~~Iwdi~s~ltvPk------------e-~~~fs~~~l~---gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~--- 187 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPK------------E-SPLFSSSTLD---GQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL--- 187 (783)
T ss_pred ccCCccceecccccCCCc------------c-cccccccccc---CccccccccCcchhhcccccchhhhhhhhhhh---
Confidence 377999999976533211 1 112222 222 23355566677999999999999998876421
Q ss_pred CCCcceeEEecccCCcEEEEEEec-CCCEEEeeCCCcEEEEeC
Q 003171 228 DDGFGEVLSWQAHRGPVLSLCISS-YGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~-dG~L~SgS~DgtIrvWd~ 269 (842)
.....+ .+..|..+..+| .+.-+..+.||.|-+||.
T Consensus 188 ----~~~~sv--nTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~ 224 (783)
T KOG1008|consen 188 ----DSVSSV--NTKYVQGITVDPFSPNYFCSNSDGDIAIWDT 224 (783)
T ss_pred ----hhhhhh--hhhhcccceecCCCCCceeccccCceeeccc
Confidence 011111 134566777888 444333444999999994
No 422
>PRK13616 lipoprotein LpqB; Provisional
Probab=34.48 E-value=1.9e+02 Score=35.02 Aligned_cols=94 Identities=11% Similarity=0.092 Sum_probs=48.4
Q ss_pred CceEEEEECCCCc-EEEEe------CCC--eEEEEcCCCCeeeeeecCCccEEEEEecCCEEEEEecC-cEEEEE-----
Q 003171 420 RRTEALTTSIDGM-IWTGG------ANG--LLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMN-GIVQVL----- 484 (842)
Q Consensus 420 ~~v~al~~s~dg~-l~Sgs------~Dg--tIrlWD~~g~~l~~l~~H~~~V~sls~dG~~LasGs~D-gtIrlW----- 484 (842)
..+.+.++||||. ++..- .|. .|.+++..+.....+.+....=-++++||+.||+.+.. ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 4566788999998 33222 243 45555554444332333322222456788888876532 222232
Q ss_pred ------eCCCcccccccccccCEEEEE--eCCCEEEEEc
Q 003171 485 ------DLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLA 515 (842)
Q Consensus 485 ------D~~g~~i~~l~gH~~~V~sla--~dg~~l~S~S 515 (842)
++++...+. ...+.|.++. +||..++-..
T Consensus 430 gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 430 GQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred ceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE
Confidence 443221111 2245688776 5898877544
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=32.47 E-value=2e+02 Score=32.36 Aligned_cols=73 Identities=11% Similarity=0.082 Sum_probs=42.8
Q ss_pred CeEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeC
Q 003171 193 SVMCMVGDEASGVVWSGH-----------RDG-RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE 260 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs-----------~DG-tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~ 260 (842)
....|++|++|++.++-. ..+ .|.+++-..+. ........+...-...+.|++.++| |+.++.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd----G~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~ 89 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGD----GKYDKSNVFAEELSMVTGLAVAVGG-VYVATP 89 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC----CCcceeEEeecCCCCccceeEecCC-EEEeCC
Confidence 355789999988766532 223 67666543321 1122233333333456889999999 776666
Q ss_pred CCcEEEEeCC
Q 003171 261 GGGIKIWPWE 270 (842)
Q Consensus 261 DgtIrvWd~~ 270 (842)
+...++.+.+
T Consensus 90 ~~i~~~~d~~ 99 (367)
T TIGR02604 90 PDILFLRDKD 99 (367)
T ss_pred CeEEEEeCCC
Confidence 6555555554
No 424
>PRK13684 Ycf48-like protein; Provisional
Probab=32.27 E-value=1.7e+02 Score=32.45 Aligned_cols=63 Identities=22% Similarity=0.449 Sum_probs=40.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcE-EEEECCCCccCCCCCcceeEEeccc----CCcEEEEEEecCCCEEEeeCCCcEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRI-MCWKMNARLLDSDDGFGEVLSWQAH----RGPVLSLCISSYGDLWSGSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtI-rlWdl~~g~~~~~~~~~~~~~l~gH----~~~V~slafs~dG~L~SgS~DgtIr 265 (842)
.+.+.++.++|++.+++.|.. |.+ +.++- .+ .+|+.+ ...++++++.++++++..+..|.++
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~-gg-----------~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~ 238 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEP-GQ-----------TAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIR 238 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcCC-CC-----------CeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEE
Confidence 346888999998776666554 544 33321 11 123222 4578999999999987777778765
Q ss_pred E
Q 003171 266 I 266 (842)
Q Consensus 266 v 266 (842)
+
T Consensus 239 ~ 239 (334)
T PRK13684 239 F 239 (334)
T ss_pred E
Confidence 3
No 425
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=31.93 E-value=5.6e+02 Score=27.11 Aligned_cols=65 Identities=11% Similarity=0.110 Sum_probs=41.2
Q ss_pred CeEEEEEcCCCCEEEEEe--CCC-cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeC-CCcEEEEe
Q 003171 193 SVMCMVGDEASGVVWSGH--RDG-RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE-GGGIKIWP 268 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs--~DG-tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~-DgtIrvWd 268 (842)
.+...+++++++.+|.-. .++ .+.++...+. ....+.++ .++.-.|+++|.+|+... +...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~---------~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP---------VRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVR 93 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc---------ceeeccCC--ccccccccCCCCEEEEEcCCCceEEEE
Confidence 577889999998877655 332 4555554432 12222333 677788999999887644 55667764
No 426
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=31.66 E-value=7.3e+02 Score=27.26 Aligned_cols=102 Identities=17% Similarity=0.234 Sum_probs=49.2
Q ss_pred CCceEEEEECCCCcEEEEeCCCe-EEEEcC-CCCeeeeeecCCccEEEEEecC-CEEEEEecCcEEEEEeCC--Cc----
Q 003171 419 NRRTEALTTSIDGMIWTGGANGL-LLQWDP-NGNRLQDFQYLPFAVQCLCTFG-SQIWVGYMNGIVQVLDLE--GN---- 489 (842)
Q Consensus 419 ~~~v~al~~s~dg~l~Sgs~Dgt-IrlWD~-~g~~l~~l~~H~~~V~sls~dG-~~LasGs~DgtIrlWD~~--g~---- 489 (842)
...+..+..++||+++..+..|. ..-||. ...-...-..-+.+|.++.++. ..||.....|.|+.=+.. +.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~ 223 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE 223 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE--
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc
Confidence 45667788899999665555554 568887 3222222233467899887643 466667789999888721 11
Q ss_pred ccccccccccCEEEEEe-CCCEEEEEcCCCCe
Q 003171 490 LLGGWVAHSSPVIKMAV-GAGYIFTLANHGGI 520 (842)
Q Consensus 490 ~i~~l~gH~~~V~sla~-dg~~l~S~S~DgtI 520 (842)
.+.....-.-.+..|++ .++.++.++..|++
T Consensus 224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l 255 (302)
T PF14870_consen 224 PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL 255 (302)
T ss_dssp -B-TTSS--S-EEEEEESSSS-EEEEESTT-E
T ss_pred ccCCcccCceeeEEEEecCCCCEEEEeCCccE
Confidence 12222112223677775 34455555555554
No 427
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=30.77 E-value=55 Score=38.98 Aligned_cols=29 Identities=21% Similarity=0.333 Sum_probs=23.3
Q ss_pred CCCcEEEEeCCCeEEEEcC-CCCeeeeeec
Q 003171 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQY 457 (842)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~ 457 (842)
.+..+++-+.|+++|+||+ +++|+.++..
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 3445889999999999999 7888776543
No 428
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=30.75 E-value=7.6e+02 Score=28.26 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=43.3
Q ss_pred ceEEEEECCCCcEEEEeCCCeEEEEcCCCCeeeeee---cCCccEEEEEe-cCCEEEEEecCcEEEEE
Q 003171 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQ---YLPFAVQCLCT-FGSQIWVGYMNGIVQVL 484 (842)
Q Consensus 421 ~v~al~~s~dg~l~Sgs~DgtIrlWD~~g~~l~~l~---~H~~~V~sls~-dG~~LasGs~DgtIrlW 484 (842)
.+.++.+.+++.+|.++.+|.+....-.|+--+... .-....+.+.+ +....++.+.+|.|--|
T Consensus 329 ~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 329 GILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 477888999999999999997776665665433322 11234667765 44677777788887544
No 429
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=30.69 E-value=6.4e+02 Score=26.27 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=66.4
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEE------eeCCCcEEEE-eCCCccce
Q 003171 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS------GSEGGGIKIW-PWEAIEKA 275 (842)
Q Consensus 204 ~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S------gS~DgtIrvW-d~~t~~~~ 275 (842)
+.|+.+....+|.+|++.+.. .....+|.- -+.|..|+++..|+ |+| ++....+|++ ||......
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~------~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE------CPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC------CceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 566666777889999998532 133344432 37899999999998 664 2222377887 55432100
Q ss_pred eecCCCceeeeEEEEeeceeecccceeccceeeee-cCCEEEEEEcCCCCEEEEeCCCcEEEEEccC
Q 003171 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL-TSDIKNLLSDHSRAKVWSAGFLSFALWDART 341 (842)
Q Consensus 276 l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~-s~~v~~las~~~~~~v~s~s~~tI~lWD~~t 341 (842)
..+-...++...+..+... .....-.+.-+| +....+++..+-.+.|..|..+++.||-+..
T Consensus 102 --~~~v~vRiaG~~v~~~~~~--~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~ 164 (215)
T PF14761_consen 102 --NSPVRVRIAGHRVTPSFNE--SSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY 164 (215)
T ss_pred --CCcEEEEEcccccccCCCC--ccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence 0000000000000000000 000001111122 3456788888877777777788899998754
No 430
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=30.48 E-value=3.5e+02 Score=34.94 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=45.9
Q ss_pred EEEEEcCCCCEEEEEe---CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCE-EE---eeCCCcEEEE
Q 003171 195 MCMVGDEASGVVWSGH---RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WS---GSEGGGIKIW 267 (842)
Q Consensus 195 ~~la~dpdg~~LaSGs---~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~S---gS~DgtIrvW 267 (842)
.|+++-|.|.+|++-- .|+.|+.+.-++-. .-.-...+..-...|..|+|..++.+ +. ......|++|
T Consensus 245 ~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~-----hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 245 HSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR-----HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred cceeecCCCCeEeeeeecCCCCcEEEEecCCcc-----ccccccCCcccccchheeeecCCCCceeeeecccccceEEEE
Confidence 3688889888888743 55688888765521 00111122233445999999999984 32 3444559999
Q ss_pred eCCC
Q 003171 268 PWEA 271 (842)
Q Consensus 268 d~~t 271 (842)
-+.+
T Consensus 320 t~~N 323 (1265)
T KOG1920|consen 320 TTGN 323 (1265)
T ss_pred EecC
Confidence 8754
No 431
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=30.36 E-value=1.9e+02 Score=34.88 Aligned_cols=91 Identities=18% Similarity=0.133 Sum_probs=53.7
Q ss_pred CeEEEEcC-CCC--eeeeeecCCccEEEEEecCCEEEEEecCc-----EEEEEeCCCc---ccccccccccCEEEEEeCC
Q 003171 440 GLLLQWDP-NGN--RLQDFQYLPFAVQCLCTFGSQIWVGYMNG-----IVQVLDLEGN---LLGGWVAHSSPVIKMAVGA 508 (842)
Q Consensus 440 gtIrlWD~-~g~--~l~~l~~H~~~V~sls~dG~~LasGs~Dg-----tIrlWD~~g~---~i~~l~gH~~~V~sla~dg 508 (842)
.++..+|. ++. .+..+..-.........++...+.|+.|+ +|..+|.+.+ .+..+....+.+.....++
T Consensus 444 ~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~ 523 (571)
T KOG4441|consen 444 NSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGG 523 (571)
T ss_pred ceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECC
Confidence 35778888 442 22333321222223345677777787665 4888998743 3444555555566666788
Q ss_pred CEEEEEcCCCCeeeccccCCCC
Q 003171 509 GYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 509 ~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
...+.|+.|+.-++=.+..|+|
T Consensus 524 ~ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 524 KLYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred EEEEEecccCccccceeEEcCC
Confidence 8888899887655444444444
No 432
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=28.81 E-value=7.1e+02 Score=27.33 Aligned_cols=95 Identities=14% Similarity=0.201 Sum_probs=64.1
Q ss_pred EEEEeCCCeEEEEcCCC--Ce--eeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC--Cc--ccccccccccCEEEE
Q 003171 433 IWTGGANGLLLQWDPNG--NR--LQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE--GN--LLGGWVAHSSPVIKM 504 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~~g--~~--l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~--g~--~i~~l~gH~~~V~sl 504 (842)
...+-.+.-+++.|+.. +. +..+.. .+--.++...|++.+++..|..+-+.|+. .+ +..........-+.+
T Consensus 99 vyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v 177 (370)
T COG5276 99 VYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDV 177 (370)
T ss_pred EEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeE
Confidence 44444444599999932 22 222221 14456788899999999977788899976 22 233344444445677
Q ss_pred EeCCCEEEEEcCCCCeeeccccCC
Q 003171 505 AVGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 505 a~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
+..|++-+-+-.|+++.+-|+..|
T Consensus 178 ~ISGn~AYvA~~d~GL~ivDVSnp 201 (370)
T COG5276 178 AISGNYAYVAWRDGGLTIVDVSNP 201 (370)
T ss_pred EEecCeEEEEEeCCCeEEEEccCC
Confidence 888888888889999999998765
No 433
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=28.23 E-value=1.4e+02 Score=22.72 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=21.4
Q ss_pred CcEEEEEEecC-C--CEE-EeeCCCcEEEEeCCC
Q 003171 242 GPVLSLCISSY-G--DLW-SGSEGGGIKIWPWEA 271 (842)
Q Consensus 242 ~~V~slafs~d-G--~L~-SgS~DgtIrvWd~~t 271 (842)
++|.++.|||+ + +|+ -+-.-+.|-|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 57999999974 4 454 344457899999863
No 434
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=28.18 E-value=2.2e+02 Score=34.19 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=57.3
Q ss_pred EEEEeCC------CeEEEEcCC-CCee--eeeecCCccEEEEEecCCEEEEEecCc-----EEEEEeCCCcc---ccccc
Q 003171 433 IWTGGAN------GLLLQWDPN-GNRL--QDFQYLPFAVQCLCTFGSQIWVGYMNG-----IVQVLDLEGNL---LGGWV 495 (842)
Q Consensus 433 l~Sgs~D------gtIrlWD~~-g~~l--~~l~~H~~~V~sls~dG~~LasGs~Dg-----tIrlWD~~g~~---i~~l~ 495 (842)
.++|+.| .++..+|.. ++-. ..+.......-....+|..-++|+.|| +|..||..++. ...+.
T Consensus 336 Yv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~ 415 (571)
T KOG4441|consen 336 YVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML 415 (571)
T ss_pred EEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC
Confidence 3566666 367788883 4322 222222222222345788788888875 68999987543 33332
Q ss_pred ccccCEEEEEeCCCEEEEEcCCCCe-eeccccCCCCCcc
Q 003171 496 AHSSPVIKMAVGAGYIFTLANHGGI-RGWNVTSPGPLDS 533 (842)
Q Consensus 496 gH~~~V~sla~dg~~l~S~S~DgtI-rvWd~~~~~~~d~ 533 (842)
-....+-....+|...+.||.|+.- .+=.+..|+|..+
T Consensus 416 ~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 416 TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 2222233334688888899988876 4444555666443
No 435
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=26.81 E-value=1.1e+03 Score=27.91 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=40.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec--ccCC--cEEEEEEecCCCEEEeeC------CCcEEEEeCCCc
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--AHRG--PVLSLCISSYGDLWSGSE------GGGIKIWPWEAI 272 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~--gH~~--~V~slafs~dG~L~SgS~------DgtIrvWd~~t~ 272 (842)
++.|+.++.|+.+...|..+| +.+-... .+.. .+++--.--++.++.++. +|.|...|.+++
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TG--------k~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG 191 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTG--------KVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTG 191 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCC--------CEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCC
Confidence 356778888999989998887 3332221 1211 122211112456655432 688999999888
Q ss_pred cceeecC
Q 003171 273 EKALSLK 279 (842)
Q Consensus 273 ~~~l~~~ 279 (842)
+...+..
T Consensus 192 ~~lW~~~ 198 (527)
T TIGR03075 192 KLVWRRY 198 (527)
T ss_pred ceeEecc
Confidence 7666553
No 436
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=26.70 E-value=1.3e+03 Score=28.78 Aligned_cols=68 Identities=12% Similarity=0.122 Sum_probs=41.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcE----------------EEEEEecCCCEEEeeC------
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPV----------------LSLCISSYGDLWSGSE------ 260 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V----------------~slafs~dG~L~SgS~------ 260 (842)
++.|+.++.|+.+..-|..+| +.+-.+ ++.+.| ++--.--++.++.|+.
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TG--------k~~W~f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~ 330 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTG--------KLCEDF-GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYS 330 (764)
T ss_pred CCEEEEecCCCeEEEEECCCC--------CEEEEe-cCCCceeeecccCcCCCcccccccCCEEECCEEEEEeccccccc
Confidence 467888889999888888887 344332 111111 1111111455666543
Q ss_pred ----CCcEEEEeCCCccceeecC
Q 003171 261 ----GGGIKIWPWEAIEKALSLK 279 (842)
Q Consensus 261 ----DgtIrvWd~~t~~~~l~~~ 279 (842)
+|.|+-.|..|++...+..
T Consensus 331 ~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 331 TDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred ccCCCcEEEEEECCCCcEeeEEe
Confidence 6889999999988766554
No 437
>PHA02713 hypothetical protein; Provisional
Probab=26.66 E-value=2.4e+02 Score=33.73 Aligned_cols=78 Identities=9% Similarity=0.025 Sum_probs=43.2
Q ss_pred eEEEEcCC-CC--eeeeeecCCccEEEEEecCCEEEEEecC------cEEEEEeCCC-c---ccccccccccCEEEEEeC
Q 003171 441 LLLQWDPN-GN--RLQDFQYLPFAVQCLCTFGSQIWVGYMN------GIVQVLDLEG-N---LLGGWVAHSSPVIKMAVG 507 (842)
Q Consensus 441 tIrlWD~~-g~--~l~~l~~H~~~V~sls~dG~~LasGs~D------gtIrlWD~~g-~---~i~~l~gH~~~V~sla~d 507 (842)
++..+|+. .+ .+..+............+|+.-+.|+.+ ..|..||.+. + .+..+..+......+..+
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~ 512 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHD 512 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEEC
Confidence 47778883 32 2222221111111234466655556543 3578899874 3 344554444444555578
Q ss_pred CCEEEEEcCCC
Q 003171 508 AGYIFTLANHG 518 (842)
Q Consensus 508 g~~l~S~S~Dg 518 (842)
++..+.||.|+
T Consensus 513 ~~iyv~Gg~~~ 523 (557)
T PHA02713 513 NTIMMLHCYES 523 (557)
T ss_pred CEEEEEeeecc
Confidence 88888999888
No 438
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=26.61 E-value=2.1e+02 Score=20.30 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=17.7
Q ss_pred CCcEEEEEEecCCC-EE-EeeCC--CcEEEE
Q 003171 241 RGPVLSLCISSYGD-LW-SGSEG--GGIKIW 267 (842)
Q Consensus 241 ~~~V~slafs~dG~-L~-SgS~D--gtIrvW 267 (842)
.+.-...+|||||+ |+ +...+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 44567789999998 54 66666 665555
No 439
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=26.50 E-value=42 Score=39.80 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=51.9
Q ss_pred CCeEEEEcC-CC--Cee--eeeec-CCccEEEEEe--cCCEEEEEecCcEEEEEeCCCcccccccccccCEEEE--Ee-C
Q 003171 439 NGLLLQWDP-NG--NRL--QDFQY-LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKM--AV-G 507 (842)
Q Consensus 439 DgtIrlWD~-~g--~~l--~~l~~-H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sl--a~-d 507 (842)
|-.+++||+ ++ ... -.|.+ -...+.++++ +-+.+.+|...+.|.++|+...+.+...-.+..|..+ .+ .
T Consensus 128 ds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 128 DSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFS 207 (783)
T ss_pred cCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCC
Confidence 456999999 44 111 11222 2223445655 5668889999999999998744333222222233333 33 6
Q ss_pred CCEEEEEcCCCCeeecc
Q 003171 508 AGYIFTLANHGGIRGWN 524 (842)
Q Consensus 508 g~~l~S~S~DgtIrvWd 524 (842)
+.++++-+ |+.|-+||
T Consensus 208 ~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWD 223 (783)
T ss_pred CCceeccc-cCceeecc
Confidence 77888766 99999999
No 440
>PRK13684 Ycf48-like protein; Provisional
Probab=25.63 E-value=9.4e+02 Score=26.58 Aligned_cols=105 Identities=20% Similarity=0.213 Sum_probs=59.6
Q ss_pred CceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeec----CCccEEEEEec-CCEEEEEecCcEEEEEeCCCccccc
Q 003171 420 RRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY----LPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNLLGG 493 (842)
Q Consensus 420 ~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~----H~~~V~sls~d-G~~LasGs~DgtIrlWD~~g~~i~~ 493 (842)
..+.++++.+++.++..+..|.+++=.. .|+--+.... ....+.++.+. ...+++++.+|.|..=.-.|+.-+.
T Consensus 215 ~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~ 294 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEK 294 (334)
T ss_pred ccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeE
Confidence 4567788999999877777886654333 3433222111 12346666553 2356666778876543222443222
Q ss_pred cc---ccccCEEEEE-eCCCEEEEEcCCCCeeecc
Q 003171 494 WV---AHSSPVIKMA-VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 494 l~---gH~~~V~sla-~dg~~l~S~S~DgtIrvWd 524 (842)
.. +-....+.+. .+++..+-++..|.|-.|+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 295 DPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred CCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence 21 1123466655 4666667788888887765
No 441
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.52 E-value=4.1e+02 Score=28.93 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=37.7
Q ss_pred EECCCCcEEEEeCC------CeEEEEcC-CC-CeeeeeecCCccEE--EEEecCCEEEEEecCcEEEEE
Q 003171 426 TTSIDGMIWTGGAN------GLLLQWDP-NG-NRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVL 484 (842)
Q Consensus 426 ~~s~dg~l~Sgs~D------gtIrlWD~-~g-~~l~~l~~H~~~V~--sls~dG~~LasGs~DgtIrlW 484 (842)
+||+||.++-++++ |.|-+||. ++ +.+.++..|.-.-. .+..||+.|+.+ .|.|+.-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe--CCceecc
Confidence 37888886655543 67899999 43 66777776654333 456799988774 4455544
No 442
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=24.88 E-value=2.7e+02 Score=32.19 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=56.5
Q ss_pred ceEEEEECCCCc-EEEE-e-CC--CeEEEEcC-CCC--eeeeeecCCccEEEEEecCCEEEEEe-cCcE--EEEEeCCCc
Q 003171 421 RTEALTTSIDGM-IWTG-G-AN--GLLLQWDP-NGN--RLQDFQYLPFAVQCLCTFGSQIWVGY-MNGI--VQVLDLEGN 489 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sg-s-~D--gtIrlWD~-~g~--~l~~l~~H~~~V~sls~dG~~LasGs-~Dgt--IrlWD~~g~ 489 (842)
.+..-.++++++ ++-- - .. ..+.++|+ .|+ .+.++.++. ..-.+++||++|+..+ .||. |.+.|+.++
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~-~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN-GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc-CCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 344455677776 3211 1 12 35889999 454 344444433 3457889999777555 4665 455577765
Q ss_pred cccccc---ccccCEEEEEeCCCEEE-EEcCCCCeeecc
Q 003171 490 LLGGWV---AHSSPVIKMAVGAGYIF-TLANHGGIRGWN 524 (842)
Q Consensus 490 ~i~~l~---gH~~~V~sla~dg~~l~-S~S~DgtIrvWd 524 (842)
.+..+. +... -.++.+||++++ ..+..|.=.||-
T Consensus 273 ~~~~Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~ 310 (425)
T COG0823 273 NLPRLTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYL 310 (425)
T ss_pred cceecccCCcccc-CccCCCCCCEEEEEeCCCCCcceEE
Confidence 443333 2222 234567998876 544555555554
No 443
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=23.61 E-value=1.1e+02 Score=37.55 Aligned_cols=88 Identities=19% Similarity=0.346 Sum_probs=60.6
Q ss_pred CCeEEEEcCCCCeeeeeecCCccEEEEEecCC--EEEEEecCcEEEEEeCCCc-ccccccccccCEEEEEe--CCCEEEE
Q 003171 439 NGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGS--QIWVGYMNGIVQVLDLEGN-LLGGWVAHSSPVIKMAV--GAGYIFT 513 (842)
Q Consensus 439 DgtIrlWD~~g~~l~~l~~H~~~V~sls~dG~--~LasGs~DgtIrlWD~~g~-~i~~l~gH~~~V~sla~--dg~~l~S 513 (842)
.|+|.++--+|+.-+..+. .-.+++++.... .|++|-.-|.+.+|....+ .-..-.-|..+|..+.+ +|+.++|
T Consensus 40 ~GSVtIfadtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t 118 (1416)
T KOG3617|consen 40 GGSVTIFADTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMT 118 (1416)
T ss_pred CceEEEEecCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEE
Confidence 4667777767775433321 122345665443 7788888899999997744 33444568888888864 7888999
Q ss_pred EcCCCCeeeccccC
Q 003171 514 LANHGGIRGWNVTS 527 (842)
Q Consensus 514 ~S~DgtIrvWd~~~ 527 (842)
+..=|.|.+|.+..
T Consensus 119 ~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 119 LDNPGSVHLWRYDV 132 (1416)
T ss_pred cCCCceeEEEEeee
Confidence 99999999998653
No 444
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=22.76 E-value=61 Score=29.28 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=7.2
Q ss_pred EEEEeccceeeec
Q 003171 764 MVIFLGDFNYRLD 776 (842)
Q Consensus 764 ~vf~~GDlNyRi~ 776 (842)
.++++||||..-.
T Consensus 32 ~~Ii~GDFN~~~~ 44 (119)
T PF14529_consen 32 PIIIGGDFNAHHP 44 (119)
T ss_dssp SEEEEEE-----G
T ss_pred CEEEEeECCCCch
Confidence 8999999999644
No 445
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=22.63 E-value=7.2e+02 Score=26.91 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=45.2
Q ss_pred eEEEEECCCCcEEEEeC---C----------CeEEEEcC-CCCeeeeeecC------CccEEEEEecC-------CEEEE
Q 003171 422 TEALTTSIDGMIWTGGA---N----------GLLLQWDP-NGNRLQDFQYL------PFAVQCLCTFG-------SQIWV 474 (842)
Q Consensus 422 v~al~~s~dg~l~Sgs~---D----------gtIrlWD~-~g~~l~~l~~H------~~~V~sls~dG-------~~Las 474 (842)
|..+.+..+|+||.--. + -.|.+||+ +++.++++.-. .+.++.+..|. .+++.
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 45566777788774321 1 16888999 78888877632 34566776654 36666
Q ss_pred Eec-CcEEEEEeCC-Ccccccc
Q 003171 475 GYM-NGIVQVLDLE-GNLLGGW 494 (842)
Q Consensus 475 Gs~-DgtIrlWD~~-g~~i~~l 494 (842)
+.. .+.|-|+|+. ++..+.+
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~ 104 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVL 104 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEE
T ss_pred eCCCcCcEEEEEccCCcEEEEe
Confidence 654 4689999987 5544433
No 446
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=22.48 E-value=2.9e+02 Score=19.60 Aligned_cols=23 Identities=0% Similarity=0.030 Sum_probs=16.8
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCC
Q 003171 201 EASGVVWSGH-RDGRIMCWKMNAR 223 (842)
Q Consensus 201 pdg~~LaSGs-~DGtIrlWdl~~g 223 (842)
|+++.|+.+. .+++|-++|..++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~ 24 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN 24 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC
Confidence 5677666655 5778999998775
No 447
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=22.33 E-value=1.5e+02 Score=33.83 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=35.7
Q ss_pred CeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCcc-----------CCCCCcceeEEe-cccCCcEEEEEEecC-CCEEEe
Q 003171 193 SVMCMVGDEASGVVWSGHRD-GRIMCWKMNARLL-----------DSDDGFGEVLSW-QAHRGPVLSLCISSY-GDLWSG 258 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~D-GtIrlWdl~~g~~-----------~~~~~~~~~~~l-~gH~~~V~slafs~d-G~L~Sg 258 (842)
.-..|+|+|||++.+|-+.- .--+.||.....+ ..++.+.....| .||++++ .++|+|. |+||+.
T Consensus 178 ~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~q-Gl~w~P~tg~Lw~~ 256 (399)
T COG2133 178 FGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQ-GLAWHPVTGALWTT 256 (399)
T ss_pred CcccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCcc-ceeecCCCCcEEEE
Confidence 45579999999887774433 2222333222110 112233332233 5888876 6889986 667764
No 448
>PF10515 APP_amyloid: beta-amyloid precursor protein C-terminus; InterPro: IPR019543 This is the amyloid, C-terminal, protein of the beta-Amyloid precursor protein (APP) which is a conserved and ubiquitous transmembrane glycoprotein strongly implicated in the pathogenesis of Alzheimer's disease but whose normal biological function is unknown. The C-terminal 100 residues are released and aggregate into amyloid deposits which are strongly implicated in the pathology of Alzheimer's disease plaque-formation. The domain is associated with IPR008154 from INTERPRO, further towards the N terminus. ; PDB: 2ROZ_A 3DXD_D 1X11_D 2LP1_A 2LOH_A 3MXC_L 3MXY_L 3DXC_B 3DXE_D 3L81_B ....
Probab=22.05 E-value=32 Score=27.06 Aligned_cols=6 Identities=67% Similarity=1.403 Sum_probs=5.0
Q ss_pred CCCccc
Q 003171 822 PPTYKF 827 (842)
Q Consensus 822 ~PTYK~ 827 (842)
-|||||
T Consensus 45 NPTYky 50 (52)
T PF10515_consen 45 NPTYKY 50 (52)
T ss_dssp SCTCHH
T ss_pred CCceec
Confidence 489998
No 449
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=21.26 E-value=9.8e+02 Score=25.23 Aligned_cols=93 Identities=13% Similarity=0.038 Sum_probs=47.0
Q ss_pred ceEEEEECCCCc-EEEEe---CCCeEEEEcCCCCeeeeeecCCccEE--EEEecCCEEEEEecCcEEEEEe--CCCc--c
Q 003171 421 RTEALTTSIDGM-IWTGG---ANGLLLQWDPNGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLD--LEGN--L 490 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs---~DgtIrlWD~~g~~l~~l~~H~~~V~--sls~dG~~LasGs~DgtIrlWD--~~g~--~ 490 (842)
.+.+.++|+||. ++... ....+.++...+.....+.+. .+. ++..+|........+...+++. ..++ .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 566788999987 44333 223455555544443333433 333 3344544333434466666663 2333 2
Q ss_pred ccc-ccccccCEEEEE--eCCCEEEEEc
Q 003171 491 LGG-WVAHSSPVIKMA--VGAGYIFTLA 515 (842)
Q Consensus 491 i~~-l~gH~~~V~sla--~dg~~l~S~S 515 (842)
+.. +..-.+.|.++. +||..++-..
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEE
Confidence 211 111112788765 6898876433
No 450
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=20.31 E-value=1e+03 Score=28.93 Aligned_cols=128 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred CeEEEEcC--CC-------CeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCCCccccccccc--ccCEEEEE-
Q 003171 440 GLLLQWDP--NG-------NRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAH--SSPVIKMA- 505 (842)
Q Consensus 440 gtIrlWD~--~g-------~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g~~i~~l~gH--~~~V~sla- 505 (842)
|.|+.|-. +. ....++...-....-+ +.-++.-++-+...++.|||..+..+.--... .+.|..+.
T Consensus 1 g~~~~~~a~v~~~~~~~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDW 80 (631)
T PF12234_consen 1 GRIRTWTARVDTESNKIEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDW 80 (631)
T ss_pred CeeEEEEEEEcCCCCeEEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeecee
Q ss_pred ---eCCCEEEEEcCCCCeeeccccCCCCCcchhhhhhcccccccccccceeEEEEEEEeCCCCCCcccccccccCCCCCc
Q 003171 506 ---VGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDV 582 (842)
Q Consensus 506 ---~dg~~l~S~S~DgtIrvWd~~~~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~~~~~l~~~l~~~~~~~ 582 (842)
+|++.+++.|-...|.++- +....|+....-...+-..++....|.+-.=.-|+..
T Consensus 81 tst~d~qsiLaVGf~~~v~l~~----------------Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~----- 139 (631)
T PF12234_consen 81 TSTPDGQSILAVGFPHHVLLYT----------------QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKD----- 139 (631)
T ss_pred eecCCCCEEEEEEcCcEEEEEE----------------ccchhhhcCCcccceeEEEEeecCCCCCccceeEecC-----
Q ss_pred eEEEEE
Q 003171 583 GIVVVG 588 (842)
Q Consensus 583 di~vig 588 (842)
+..|||
T Consensus 140 G~LvV~ 145 (631)
T PF12234_consen 140 GTLVVG 145 (631)
T ss_pred CeEEEE
No 451
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=20.11 E-value=1.7e+02 Score=19.83 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=13.1
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCe
Q 003171 430 DGMIWTGGANGLLLQWDP-NGNR 451 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~ 451 (842)
+|.++.++.+|.+...|. +|+.
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcE
Confidence 445666666666666666 4544
Done!