Query 003171
Match_columns 842
No_of_seqs 446 out of 2523
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 15:51:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 6.3E-67 2.2E-71 560.2 27.7 257 546-841 2-258 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 9.9E-63 3.4E-67 529.1 23.7 240 548-838 4-256 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 8.2E-59 2.8E-63 510.3 24.1 268 528-841 1-274 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 8.3E-58 2.9E-62 503.1 25.7 252 544-841 18-274 (357)
5 2imq_X Salivary nitrophorin; f 100.0 4.8E-46 1.6E-50 400.7 17.5 231 549-841 4-237 (282)
6 1vyh_C Platelet-activating fac 100.0 1.3E-34 4.5E-39 327.4 35.9 267 191-525 108-409 (410)
7 4gqb_B Methylosome protein 50; 100.0 1.2E-33 4E-38 312.8 35.9 287 133-527 31-331 (344)
8 1nr0_A Actin interacting prote 100.0 5.9E-33 2E-37 330.3 43.8 360 134-525 149-609 (611)
9 2ymu_A WD-40 repeat protein; u 100.0 1.8E-32 6.1E-37 321.0 44.8 330 134-524 223-577 (577)
10 3ow8_A WD repeat-containing pr 100.0 4.1E-33 1.4E-37 304.9 35.3 260 144-525 50-319 (321)
11 1nr0_A Actin interacting prote 100.0 4.7E-32 1.6E-36 322.5 44.8 360 141-528 29-568 (611)
12 1erj_A Transcriptional repress 100.0 2E-32 6.9E-37 307.4 36.7 292 134-528 66-390 (393)
13 4g56_B MGC81050 protein; prote 100.0 1.3E-32 4.6E-37 305.3 34.0 285 191-535 42-351 (357)
14 1got_B GT-beta; complex (GTP-b 100.0 5.5E-32 1.9E-36 297.6 35.9 270 191-524 55-340 (340)
15 2ymu_A WD-40 repeat protein; u 100.0 8.3E-31 2.8E-35 306.8 45.0 360 134-525 18-414 (577)
16 2ynn_A Coatomer subunit beta'; 100.0 9.9E-31 3.4E-35 282.9 37.5 268 191-526 13-301 (304)
17 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.4E-31 1.9E-35 290.4 32.9 282 135-530 19-338 (345)
18 2pbi_B Guanine nucleotide-bind 100.0 1.3E-30 4.3E-35 288.9 35.8 274 191-524 64-354 (354)
19 3iz6_a 40S ribosomal protein R 100.0 1E-31 3.4E-36 300.3 27.1 277 191-528 66-376 (380)
20 1vyh_C Platelet-activating fac 100.0 2.1E-30 7.2E-35 293.0 38.1 286 133-486 109-409 (410)
21 2hes_X YDR267CP; beta-propelle 100.0 1.5E-30 5.2E-35 285.1 35.3 285 134-527 16-328 (330)
22 4ery_A WD repeat-containing pr 100.0 2.3E-30 7.8E-35 279.6 34.3 267 191-525 23-310 (312)
23 3ow8_A WD repeat-containing pr 100.0 1E-30 3.5E-35 285.8 30.9 239 191-531 32-283 (321)
24 3frx_A Guanine nucleotide-bind 100.0 6.2E-30 2.1E-34 278.8 34.9 277 191-527 17-317 (319)
25 2xzm_R RACK1; ribosome, transl 100.0 1.5E-29 5.3E-34 278.1 37.6 275 134-527 23-340 (343)
26 3sfz_A APAF-1, apoptotic pepti 100.0 8.5E-29 2.9E-33 316.8 45.6 406 87-532 623-1163(1249)
27 2oaj_A Protein SNI1; WD40 repe 100.0 1.7E-29 5.8E-34 313.7 36.3 380 87-525 25-659 (902)
28 1got_B GT-beta; complex (GTP-b 100.0 1.2E-28 3.9E-33 271.0 37.8 268 134-485 57-340 (340)
29 4aow_A Guanine nucleotide-bind 100.0 1.2E-28 4E-33 267.2 36.5 276 191-528 38-338 (340)
30 2pm9_A Protein WEB1, protein t 100.0 1.4E-29 4.9E-34 282.8 29.0 307 148-527 42-414 (416)
31 3vl1_A 26S proteasome regulato 100.0 1.9E-28 6.6E-33 274.7 37.0 322 139-528 65-420 (420)
32 4gqb_B Methylosome protein 50; 100.0 8.6E-29 2.9E-33 273.8 33.3 239 133-489 83-332 (344)
33 2pm7_B Protein transport prote 100.0 5.7E-29 1.9E-33 268.2 30.5 237 191-527 9-285 (297)
34 1p22_A F-BOX/WD-repeat protein 100.0 5.4E-29 1.8E-33 282.7 31.5 270 133-529 134-416 (435)
35 1r5m_A SIR4-interacting protei 100.0 8.6E-29 2.9E-33 275.8 32.1 282 191-526 108-424 (425)
36 1pgu_A Actin interacting prote 100.0 7.2E-28 2.4E-32 282.9 40.3 333 134-526 162-613 (615)
37 1gxr_A ESG1, transducin-like e 100.0 3.2E-27 1.1E-31 254.9 39.9 273 134-525 53-335 (337)
38 4ggc_A P55CDC, cell division c 100.0 4.2E-28 1.4E-32 260.3 32.7 276 135-530 28-318 (318)
39 3dm0_A Maltose-binding peripla 100.0 5.1E-28 1.8E-32 291.7 37.2 277 133-527 383-693 (694)
40 4h5i_A Guanine nucleotide-exch 100.0 6.7E-29 2.3E-33 276.5 26.9 284 191-526 14-342 (365)
41 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.5E-27 1.2E-31 268.1 41.4 297 135-527 122-442 (445)
42 4gga_A P55CDC, cell division c 100.0 3.7E-28 1.3E-32 274.7 32.9 279 135-532 108-400 (420)
43 3bg1_A Protein SEC13 homolog; 100.0 7E-29 2.4E-33 270.1 25.4 252 191-526 13-292 (316)
44 4g56_B MGC81050 protein; prote 100.0 4.3E-28 1.5E-32 269.0 32.0 280 86-487 49-342 (357)
45 3v7d_B Cell division control p 100.0 1.6E-27 5.6E-32 271.6 37.4 288 135-532 125-426 (464)
46 1erj_A Transcriptional repress 100.0 5.2E-28 1.8E-32 271.4 32.3 234 191-530 64-344 (393)
47 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.7E-28 9.3E-33 268.8 29.3 239 192-527 17-283 (345)
48 3sfz_A APAF-1, apoptotic pepti 100.0 4.9E-27 1.7E-31 300.5 45.2 341 133-530 616-1077(1249)
49 3k26_A Polycomb protein EED; W 100.0 1.3E-28 4.6E-33 268.9 26.2 304 134-526 20-365 (366)
50 2ynn_A Coatomer subunit beta'; 100.0 8.7E-28 3E-32 259.8 32.1 239 232-530 4-262 (304)
51 3zwl_B Eukaryotic translation 100.0 2.2E-27 7.4E-32 259.2 35.3 280 191-527 32-346 (369)
52 2xzm_R RACK1; ribosome, transl 100.0 4.1E-27 1.4E-31 258.8 36.9 243 191-530 21-288 (343)
53 3i2n_A WD repeat-containing pr 100.0 7.3E-28 2.5E-32 262.5 29.7 277 133-528 19-354 (357)
54 2pbi_B Guanine nucleotide-bind 100.0 4.8E-27 1.6E-31 260.1 36.5 270 134-485 66-354 (354)
55 2hes_X YDR267CP; beta-propelle 100.0 1.5E-27 5E-32 261.3 31.9 240 191-527 14-280 (330)
56 1k8k_C P40, ARP2/3 complex 41 100.0 3.4E-27 1.2E-31 259.1 32.5 272 191-527 8-361 (372)
57 2oaj_A Protein SNI1; WD40 repe 100.0 2.4E-27 8.1E-32 294.4 34.6 165 134-351 19-192 (902)
58 2j04_B YDR362CP, TAU91; beta p 100.0 2.4E-28 8.1E-33 285.4 23.6 305 148-527 180-517 (524)
59 3odt_A Protein DOA1; ubiquitin 100.0 9.2E-27 3.2E-31 248.9 33.9 266 191-528 18-297 (313)
60 1r5m_A SIR4-interacting protei 100.0 5.5E-27 1.9E-31 261.2 33.3 291 186-527 41-361 (425)
61 1sq9_A Antiviral protein SKI8; 100.0 4.3E-27 1.5E-31 261.4 30.8 289 191-527 16-395 (397)
62 4e54_B DNA damage-binding prot 100.0 8.8E-28 3E-32 273.1 24.5 272 191-528 119-431 (435)
63 3dwl_C Actin-related protein 2 100.0 6.2E-28 2.1E-32 266.8 22.3 267 191-525 11-377 (377)
64 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.5E-26 8.7E-31 261.0 35.7 266 191-532 118-396 (445)
65 3ei3_B DNA damage-binding prot 100.0 1.1E-26 3.9E-31 257.8 30.1 267 191-527 73-382 (383)
66 4aez_A CDC20, WD repeat-contai 100.0 3.4E-26 1.2E-30 256.7 34.0 273 135-531 96-384 (401)
67 3f3f_A Nucleoporin SEH1; struc 100.0 7.2E-27 2.5E-31 251.6 27.3 262 191-530 11-340 (351)
68 4ery_A WD repeat-containing pr 100.0 1.9E-25 6.6E-30 240.9 38.3 267 133-487 24-311 (312)
69 3gre_A Serine/threonine-protei 100.0 6E-27 2E-31 264.8 27.5 280 191-524 63-437 (437)
70 3iz6_a 40S ribosomal protein R 100.0 5.5E-27 1.9E-31 261.8 26.9 279 134-488 68-375 (380)
71 1pgu_A Actin interacting prote 100.0 5.4E-26 1.9E-30 266.8 36.2 305 141-526 29-365 (615)
72 4a11_B DNA excision repair pro 100.0 1.2E-26 4.2E-31 257.2 27.9 275 191-533 43-371 (408)
73 3frx_A Guanine nucleotide-bind 99.9 1.6E-25 5.6E-30 243.8 34.1 269 134-487 19-316 (319)
74 3v7d_B Cell division control p 99.9 7.9E-26 2.7E-30 257.7 32.7 253 191-528 121-382 (464)
75 3mmy_A MRNA export factor; mRN 99.9 8.1E-26 2.8E-30 246.6 31.1 267 191-527 39-346 (368)
76 3jrp_A Fusion protein of prote 99.9 4.6E-26 1.6E-30 250.0 28.5 239 191-527 11-287 (379)
77 3dw8_B Serine/threonine-protei 99.9 7.4E-26 2.5E-30 255.5 30.8 268 191-529 28-375 (447)
78 1p22_A F-BOX/WD-repeat protein 99.9 1.9E-25 6.5E-30 253.5 32.9 229 191-527 133-365 (435)
79 3dm0_A Maltose-binding peripla 99.9 1E-25 3.6E-30 271.5 30.8 241 191-529 382-634 (694)
80 3vl1_A 26S proteasome regulato 99.9 3.4E-26 1.2E-30 256.3 24.4 290 193-528 58-366 (420)
81 2pm9_A Protein WEB1, protein t 99.9 2.3E-26 7.9E-31 256.8 22.8 277 192-530 13-340 (416)
82 1yfq_A Cell cycle arrest prote 99.9 1.3E-25 4.5E-30 243.7 28.0 267 191-525 11-322 (342)
83 1gxr_A ESG1, transducin-like e 99.9 4.4E-25 1.5E-29 238.1 31.9 237 191-528 51-297 (337)
84 4h5i_A Guanine nucleotide-exch 99.9 6.2E-26 2.1E-30 252.5 25.8 278 131-487 13-342 (365)
85 3mkq_A Coatomer beta'-subunit; 99.9 2.2E-24 7.6E-29 262.9 36.1 271 191-529 13-304 (814)
86 2j04_B YDR362CP, TAU91; beta p 99.9 7.7E-26 2.6E-30 264.2 21.6 236 200-527 170-428 (524)
87 3k26_A Polycomb protein EED; W 99.9 3.3E-25 1.1E-29 241.9 24.4 239 191-530 18-321 (366)
88 4aow_A Guanine nucleotide-bind 99.9 1.6E-23 5.4E-28 226.8 37.3 272 133-487 39-336 (340)
89 4gq1_A NUP37; propeller, trans 99.9 2E-25 7E-30 250.6 22.9 256 195-525 93-387 (393)
90 2pm7_B Protein transport prote 99.9 4.2E-24 1.4E-28 230.0 31.9 240 134-487 11-284 (297)
91 3dw8_B Serine/threonine-protei 99.9 2.6E-24 8.7E-29 242.8 29.9 304 132-524 28-443 (447)
92 2aq5_A Coronin-1A; WD40 repeat 99.9 2.2E-24 7.4E-29 241.7 28.9 270 148-527 54-342 (402)
93 3bg1_A Protein SEC13 homolog; 99.9 1.4E-24 4.6E-29 236.2 26.1 240 134-487 15-292 (316)
94 1sq9_A Antiviral protein SKI8; 99.9 8.8E-24 3E-28 234.6 31.7 283 134-487 18-394 (397)
95 3i2n_A WD repeat-containing pr 99.9 3.9E-24 1.3E-28 232.9 26.9 238 191-529 18-293 (357)
96 3ei3_B DNA damage-binding prot 99.9 1.8E-23 6.1E-28 232.0 32.2 265 133-488 74-382 (383)
97 3jro_A Fusion protein of prote 99.9 1.3E-24 4.4E-29 264.9 24.6 238 191-528 9-286 (753)
98 3mkq_A Coatomer beta'-subunit; 99.9 1.7E-23 5.9E-28 255.1 34.5 304 134-526 15-385 (814)
99 3zwl_B Eukaryotic translation 99.9 7.1E-23 2.4E-27 223.3 35.8 277 134-487 34-345 (369)
100 2w18_A PALB2, fancn, partner a 99.9 5.9E-24 2E-28 231.6 26.2 253 205-525 56-355 (356)
101 3odt_A Protein DOA1; ubiquitin 99.9 1.3E-22 4.3E-27 216.7 35.5 266 134-491 20-300 (313)
102 1k8k_C P40, ARP2/3 complex 41 99.9 5.4E-23 1.8E-27 225.5 31.4 273 135-487 11-360 (372)
103 4a11_B DNA excision repair pro 99.9 3E-22 1E-26 221.8 36.6 331 134-526 45-404 (408)
104 2j04_A TAU60, YPL007P, hypothe 99.9 2.9E-24 1E-28 247.8 20.7 254 191-526 15-296 (588)
105 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1E-22 3.5E-27 232.2 33.1 235 191-527 102-391 (450)
106 3gre_A Serine/threonine-protei 99.9 4.3E-23 1.5E-27 233.1 29.2 291 134-485 65-437 (437)
107 3f3f_A Nucleoporin SEH1; struc 99.9 1.4E-22 4.7E-27 218.0 30.8 267 134-497 13-350 (351)
108 2xyi_A Probable histone-bindin 99.9 2.2E-23 7.6E-28 236.6 25.3 247 191-526 128-409 (430)
109 3dwl_C Actin-related protein 2 99.9 3.8E-23 1.3E-27 228.3 24.8 287 135-486 14-377 (377)
110 4e54_B DNA damage-binding prot 99.9 2.1E-23 7.2E-28 237.0 22.7 285 90-490 131-433 (435)
111 3vu4_A KMHSV2; beta-propeller 99.9 1E-22 3.4E-27 225.4 26.8 261 191-529 19-338 (355)
112 2aq5_A Coronin-1A; WD40 repeat 99.9 1.7E-22 5.7E-27 226.3 25.8 246 194-530 37-302 (402)
113 1yfq_A Cell cycle arrest prote 99.9 9.8E-22 3.4E-26 213.1 30.5 263 134-485 13-321 (342)
114 3mmy_A MRNA export factor; mRN 99.9 1.5E-21 5.2E-26 212.7 32.1 266 133-485 40-343 (368)
115 1l0q_A Surface layer protein; 99.9 2.6E-21 8.8E-26 214.7 34.0 251 148-528 9-276 (391)
116 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3.7E-22 1.3E-26 227.5 27.7 238 192-525 5-337 (450)
117 3lrv_A PRE-mRNA-splicing facto 99.9 9.5E-23 3.3E-27 223.7 21.0 229 201-527 46-292 (343)
118 4gq1_A NUP37; propeller, trans 99.9 6.9E-23 2.4E-27 229.9 19.8 262 148-487 108-388 (393)
119 4gga_A P55CDC, cell division c 99.9 3E-21 1E-25 217.9 33.1 247 133-501 148-409 (420)
120 2j04_A TAU60, YPL007P, hypothe 99.9 1.9E-22 6.6E-27 232.7 23.5 122 191-343 85-213 (588)
121 3jrp_A Fusion protein of prote 99.9 8.5E-22 2.9E-26 215.9 27.5 240 134-487 13-286 (379)
122 4ggc_A P55CDC, cell division c 99.9 3.1E-21 1.1E-25 206.6 30.9 232 194-533 28-279 (318)
123 3lrv_A PRE-mRNA-splicing facto 99.9 3.2E-22 1.1E-26 219.5 23.6 260 142-524 48-330 (343)
124 3bws_A Protein LP49; two-domai 99.9 2.4E-21 8.1E-26 218.1 30.1 266 138-526 128-431 (433)
125 2w18_A PALB2, fancn, partner a 99.9 4.6E-22 1.6E-26 216.7 22.9 206 191-486 111-355 (356)
126 4aez_A CDC20, WD repeat-contai 99.9 1.7E-21 5.8E-26 218.4 28.2 226 193-527 95-336 (401)
127 3vu4_A KMHSV2; beta-propeller 99.9 1.6E-20 5.5E-25 207.7 26.3 229 232-528 10-272 (355)
128 2xyi_A Probable histone-bindin 99.9 5.9E-20 2E-24 208.3 29.2 238 148-489 148-411 (430)
129 3jro_A Fusion protein of prote 99.9 2E-20 7E-25 227.9 23.9 240 134-487 11-284 (753)
130 1l0q_A Surface layer protein; 99.9 1.2E-18 4E-23 193.2 35.7 264 135-527 34-342 (391)
131 3bws_A Protein LP49; two-domai 99.8 4.4E-19 1.5E-23 199.4 26.5 231 191-528 122-391 (433)
132 1nir_A Nitrite reductase; hemo 99.8 3.4E-18 1.2E-22 200.5 28.8 274 198-531 144-462 (543)
133 1nir_A Nitrite reductase; hemo 99.8 6E-17 2.1E-21 189.9 33.8 307 144-531 150-518 (543)
134 2hqs_A Protein TOLB; TOLB, PAL 99.8 7.6E-17 2.6E-21 182.4 32.4 210 191-509 178-408 (415)
135 2hqs_A Protein TOLB; TOLB, PAL 99.8 2.7E-17 9.2E-22 186.1 26.5 216 203-526 143-386 (415)
136 1k32_A Tricorn protease; prote 99.8 5.1E-16 1.8E-20 195.7 36.7 360 133-528 15-462 (1045)
137 3u4y_A Uncharacterized protein 99.7 9E-16 3.1E-20 165.9 26.3 263 142-527 9-304 (331)
138 2ecf_A Dipeptidyl peptidase IV 99.7 1.3E-15 4.6E-20 183.9 29.1 284 191-527 36-413 (741)
139 2ojh_A Uncharacterized protein 99.7 1.3E-15 4.3E-20 159.9 24.6 243 148-518 19-293 (297)
140 3vgz_A Uncharacterized protein 99.7 2.6E-14 8.9E-19 155.2 31.8 263 135-519 43-336 (353)
141 1ri6_A Putative isomerase YBHE 99.7 4.9E-15 1.7E-19 159.8 25.8 268 144-526 6-307 (343)
142 3o4h_A Acylamino-acid-releasin 99.7 5.6E-15 1.9E-19 173.8 25.6 257 191-526 21-314 (582)
143 1xfd_A DIP, dipeptidyl aminope 99.7 2.2E-15 7.6E-20 181.3 22.5 319 142-527 28-393 (723)
144 2z3z_A Dipeptidyl aminopeptida 99.7 8.4E-15 2.9E-19 176.0 26.7 275 134-528 83-436 (706)
145 1pby_B Quinohemoprotein amine 99.6 1.6E-14 5.4E-19 155.4 25.4 280 148-498 8-321 (337)
146 1k32_A Tricorn protease; prote 99.6 3.4E-14 1.2E-18 179.1 30.1 300 195-526 110-501 (1045)
147 3vgz_A Uncharacterized protein 99.6 7.2E-14 2.5E-18 151.7 27.0 242 191-528 40-304 (353)
148 2ecf_A Dipeptidyl peptidase IV 99.6 3E-14 1E-18 172.0 25.4 276 193-525 110-457 (741)
149 2z3z_A Dipeptidyl aminopeptida 99.6 7.2E-14 2.5E-18 167.9 26.3 272 192-525 82-387 (706)
150 3hfq_A Uncharacterized protein 99.6 4.3E-13 1.5E-17 146.3 28.9 248 191-526 39-316 (347)
151 2oit_A Nucleoporin 214KDA; NH2 99.6 1E-14 3.4E-19 166.2 15.2 111 418-528 148-279 (434)
152 1jmx_B Amine dehydrogenase; ox 99.6 3.5E-14 1.2E-18 153.7 17.7 69 197-273 5-76 (349)
153 2ojh_A Uncharacterized protein 99.6 1.9E-13 6.7E-18 143.1 22.7 213 208-527 17-258 (297)
154 1jmx_B Amine dehydrogenase; ox 99.6 5.6E-13 1.9E-17 144.2 26.9 283 142-497 10-335 (349)
155 1xfd_A DIP, dipeptidyl aminope 99.6 2.5E-14 8.5E-19 172.1 17.8 279 193-524 18-341 (723)
156 1pby_B Quinohemoprotein amine 99.6 2.9E-13 1E-17 145.4 23.9 257 204-529 2-312 (337)
157 3u4y_A Uncharacterized protein 99.5 1.2E-12 4.2E-17 141.1 26.8 222 198-527 4-252 (331)
158 1q7f_A NHL, brain tumor CG1071 99.5 6.9E-12 2.4E-16 132.9 31.9 234 192-530 30-283 (286)
159 1z68_A Fibroblast activation p 99.5 6E-14 2.1E-18 169.0 17.9 285 196-527 20-391 (719)
160 2oit_A Nucleoporin 214KDA; NH2 99.5 4.4E-13 1.5E-17 152.5 23.0 176 137-348 43-229 (434)
161 3pe7_A Oligogalacturonate lyas 99.5 2.3E-12 8E-17 142.2 25.0 271 197-527 41-382 (388)
162 1z68_A Fibroblast activation p 99.5 8.2E-13 2.8E-17 159.1 20.2 315 146-529 31-445 (719)
163 3scy_A Hypothetical bacterial 99.5 1.7E-11 5.9E-16 134.4 27.7 254 191-526 49-336 (361)
164 3hfq_A Uncharacterized protein 99.4 1.6E-11 5.4E-16 133.8 26.7 206 191-486 85-315 (347)
165 1ri6_A Putative isomerase YBHE 99.4 6E-12 2.1E-16 135.4 22.0 222 205-526 7-261 (343)
166 4a2l_A BT_4663, two-component 99.4 1.4E-10 4.8E-15 141.8 36.1 352 133-560 263-650 (795)
167 3fvz_A Peptidyl-glycine alpha- 99.4 3.2E-11 1.1E-15 131.4 26.5 250 191-526 23-321 (329)
168 1jof_A Carboxy-CIS,CIS-muconat 99.4 6.4E-12 2.2E-16 138.8 19.0 238 192-527 40-341 (365)
169 3scy_A Hypothetical bacterial 99.4 3.7E-10 1.3E-14 123.7 31.1 227 192-506 100-359 (361)
170 3e5z_A Putative gluconolactona 99.3 1.6E-10 5.5E-15 123.2 24.5 222 191-518 27-278 (296)
171 3azo_A Aminopeptidase; POP fam 99.3 1.4E-10 4.9E-15 137.9 25.5 103 422-525 244-365 (662)
172 3v9f_A Two-component system se 99.3 1.9E-09 6.5E-14 131.5 35.9 355 133-560 258-647 (781)
173 3o4h_A Acylamino-acid-releasin 99.3 1.3E-11 4.5E-16 145.0 15.0 102 423-525 153-274 (582)
174 4a5s_A Dipeptidyl peptidase 4 99.3 1.1E-10 3.6E-15 141.7 23.5 287 193-526 18-397 (740)
175 1jof_A Carboxy-CIS,CIS-muconat 99.3 1.3E-10 4.5E-15 128.2 21.6 240 141-489 50-342 (365)
176 3fvz_A Peptidyl-glycine alpha- 99.3 7.7E-10 2.6E-14 120.4 26.7 206 192-489 91-323 (329)
177 2oiz_A Aromatic amine dehydrog 99.3 7.5E-10 2.6E-14 122.6 25.9 79 425-506 259-355 (361)
178 3c5m_A Oligogalacturonate lyas 99.3 3E-10 1E-14 125.1 22.4 288 194-526 38-381 (396)
179 2oiz_A Aromatic amine dehydrog 99.2 5.5E-10 1.9E-14 123.6 23.0 259 211-528 29-335 (361)
180 2z2n_A Virginiamycin B lyase; 99.2 3.4E-08 1.2E-12 104.0 35.7 265 134-526 16-294 (299)
181 2gop_A Trilobed protease; beta 99.2 4.2E-09 1.4E-13 114.1 29.2 95 428-526 223-330 (347)
182 1q7f_A NHL, brain tumor CG1071 99.2 8.1E-09 2.8E-13 109.0 30.6 231 137-487 34-279 (286)
183 2dg1_A DRP35, lactonase; beta 99.2 1.1E-08 3.9E-13 110.3 30.7 222 191-517 44-300 (333)
184 4a2l_A BT_4663, two-component 99.1 2.2E-08 7.6E-13 122.3 33.1 316 135-527 133-480 (795)
185 4a5s_A Dipeptidyl peptidase 4 99.1 7.9E-09 2.7E-13 125.2 28.5 105 144-273 29-143 (740)
186 2dg1_A DRP35, lactonase; beta 99.1 1.8E-09 6.1E-14 116.7 20.5 228 192-525 6-261 (333)
187 3e5z_A Putative gluconolactona 99.1 3.9E-08 1.3E-12 104.5 29.9 229 135-492 30-290 (296)
188 1rwi_B Serine/threonine-protei 99.1 1.4E-08 4.8E-13 105.8 25.4 230 193-527 25-264 (270)
189 3v9f_A Two-component system se 99.1 7.1E-08 2.4E-12 117.5 35.0 323 133-527 211-568 (781)
190 3hxj_A Pyrrolo-quinoline quino 99.1 1.6E-09 5.4E-14 116.5 18.1 290 138-526 25-323 (330)
191 2xdw_A Prolyl endopeptidase; a 99.1 2.5E-08 8.4E-13 120.2 29.3 233 193-529 126-416 (710)
192 2gop_A Trilobed protease; beta 99.1 9.5E-09 3.2E-13 111.4 22.2 99 422-526 173-290 (347)
193 3dsm_A Uncharacterized protein 99.1 2.7E-08 9.2E-13 108.3 25.8 257 150-526 16-301 (328)
194 2z2n_A Virginiamycin B lyase; 99.1 2.6E-07 9E-12 97.1 32.7 229 191-525 14-253 (299)
195 2bkl_A Prolyl endopeptidase; m 99.0 5.9E-09 2E-13 125.4 21.9 230 193-528 122-398 (695)
196 3azo_A Aminopeptidase; POP fam 99.0 5.2E-09 1.8E-13 124.4 21.2 236 191-526 23-322 (662)
197 3no2_A Uncharacterized protein 99.0 4.4E-08 1.5E-12 104.2 25.6 212 202-514 4-230 (276)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 7.9E-08 2.7E-12 102.3 27.0 231 192-527 18-299 (314)
199 3dsm_A Uncharacterized protein 99.0 6.2E-08 2.1E-12 105.4 26.0 235 132-495 43-309 (328)
200 3pe7_A Oligogalacturonate lyas 99.0 2.3E-08 7.9E-13 109.9 22.1 257 232-527 21-329 (388)
201 1rwi_B Serine/threonine-protei 99.0 2.4E-07 8E-12 96.4 27.6 226 135-487 26-263 (270)
202 2qc5_A Streptogramin B lactona 99.0 1.3E-06 4.5E-11 91.7 33.1 262 134-524 21-297 (300)
203 3q7m_A Lipoprotein YFGL, BAMB; 98.9 4.7E-07 1.6E-11 99.7 26.4 315 139-524 50-375 (376)
204 1qks_A Cytochrome CD1 nitrite 98.9 2.3E-06 8E-11 100.3 33.6 271 144-528 168-478 (567)
205 2bkl_A Prolyl endopeptidase; m 98.8 1.2E-07 4E-12 114.0 22.5 105 421-526 228-348 (695)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 1.8E-06 6E-11 91.7 29.0 66 422-487 228-298 (314)
207 2qc5_A Streptogramin B lactona 98.8 6.5E-06 2.2E-10 86.3 33.0 228 191-525 19-258 (300)
208 3hxj_A Pyrrolo-quinoline quino 98.8 1.8E-07 6.3E-12 100.2 20.2 256 134-487 61-323 (330)
209 2xdw_A Prolyl endopeptidase; a 98.8 6.5E-07 2.2E-11 107.8 26.8 93 152-271 152-268 (710)
210 3ott_A Two-component system se 98.8 2.9E-06 1E-10 102.9 32.1 318 134-527 233-586 (758)
211 3dr2_A Exported gluconolactona 98.8 5.6E-07 1.9E-11 96.4 22.8 69 192-270 45-115 (305)
212 1yr2_A Prolyl oligopeptidase; 98.8 4.5E-07 1.6E-11 109.8 23.7 230 193-527 164-441 (741)
213 3c5m_A Oligogalacturonate lyas 98.8 3.4E-07 1.2E-11 100.4 20.5 107 418-527 186-329 (396)
214 3no2_A Uncharacterized protein 98.8 4.4E-07 1.5E-11 96.4 20.7 181 251-528 4-196 (276)
215 3g4e_A Regucalcin; six bladed 98.7 2.8E-06 9.4E-11 90.7 26.9 215 194-513 15-258 (297)
216 3hrp_A Uncharacterized protein 98.7 2.8E-06 9.5E-11 95.6 26.6 236 192-525 131-408 (409)
217 3ott_A Two-component system se 98.7 1.9E-05 6.4E-10 95.8 34.5 317 134-527 147-502 (758)
218 2ghs_A AGR_C_1268P; regucalcin 98.7 9.5E-06 3.2E-10 87.9 28.1 215 195-515 52-290 (326)
219 3sjl_D Methylamine dehydrogena 98.6 8E-06 2.7E-10 90.7 26.8 277 197-531 38-367 (386)
220 4gz1_A Tyrosyl-DNA phosphodies 98.6 3E-07 1E-11 94.9 14.0 131 553-719 9-144 (256)
221 2qe8_A Uncharacterized protein 98.6 2.4E-06 8.4E-11 93.2 21.5 261 192-523 17-317 (343)
222 1qks_A Cytochrome CD1 nitrite 98.6 7.6E-06 2.6E-10 95.9 27.0 233 199-527 163-421 (567)
223 3g4e_A Regucalcin; six bladed 98.6 2.5E-05 8.7E-10 83.1 28.1 216 142-478 24-262 (297)
224 3iuj_A Prolyl endopeptidase; h 98.6 2.8E-06 9.5E-11 102.1 22.8 88 440-527 305-405 (693)
225 4fva_A 5'-tyrosyl-DNA phosphod 98.6 2.3E-07 7.9E-12 95.9 11.6 132 552-719 12-148 (256)
226 3q7m_A Lipoprotein YFGL, BAMB; 98.5 7E-06 2.4E-10 90.2 23.4 257 203-528 53-338 (376)
227 1xip_A Nucleoporin NUP159; bet 98.5 1.5E-06 5.1E-11 96.9 18.0 175 192-474 38-230 (388)
228 4f1h_A Tyrosyl-DNA phosphodies 98.5 3.5E-07 1.2E-11 93.2 10.9 45 675-719 94-138 (250)
229 2hz6_A Endoplasmic reticulum t 98.5 5.3E-08 1.8E-12 108.0 4.4 190 202-503 8-207 (369)
230 2mad_H Methylamine dehydrogena 98.5 8.5E-05 2.9E-09 82.3 30.2 275 198-531 27-354 (373)
231 1yr2_A Prolyl oligopeptidase; 98.5 8.5E-06 2.9E-10 98.6 23.5 71 195-272 212-304 (741)
232 3teb_A Endonuclease/exonucleas 98.5 7.6E-07 2.6E-11 93.0 12.3 149 554-719 4-165 (266)
233 3hrp_A Uncharacterized protein 98.5 4.6E-05 1.6E-09 85.5 27.6 106 137-272 135-250 (409)
234 4gew_A 5'-tyrosyl-DNA phosphod 98.4 7.3E-07 2.5E-11 98.7 11.8 132 552-719 118-254 (362)
235 1ako_A Exonuclease III; AP-end 98.4 5.7E-07 1.9E-11 94.1 10.3 128 555-719 2-136 (268)
236 2mad_H Methylamine dehydrogena 98.4 0.0003 1E-08 77.9 32.7 69 424-493 271-356 (373)
237 2ghs_A AGR_C_1268P; regucalcin 98.4 8.2E-05 2.8E-09 80.4 26.9 213 144-478 63-292 (326)
238 3dr2_A Exported gluconolactona 98.4 3E-05 1E-09 82.8 23.1 57 425-483 244-302 (305)
239 3sjl_D Methylamine dehydrogena 98.4 0.00013 4.5E-09 80.9 27.5 103 141-273 43-171 (386)
240 3c75_H MADH, methylamine dehyd 98.3 0.00011 3.8E-09 82.8 25.8 103 141-273 83-211 (426)
241 1xip_A Nucleoporin NUP159; bet 98.2 1.5E-05 5.1E-10 88.7 16.3 99 422-527 90-191 (388)
242 2fp8_A Strictosidine synthase; 98.2 0.00036 1.2E-08 74.9 25.3 70 193-271 20-110 (322)
243 2hz6_A Endoplasmic reticulum t 98.2 2.9E-07 9.8E-12 102.1 0.3 94 430-527 92-192 (369)
244 1yiq_A Quinohemoprotein alcoho 98.1 0.0003 1E-08 84.4 24.4 54 478-531 454-509 (689)
245 1kb0_A Quinohemoprotein alcoho 98.1 0.00017 5.7E-09 86.4 22.1 117 141-278 76-206 (677)
246 3g6s_A Putative endonuclease/e 98.0 1.3E-05 4.4E-10 84.0 10.4 134 553-719 3-158 (267)
247 3l1w_A Uncharacterized protein 98.0 1.3E-05 4.3E-10 83.5 10.0 133 555-719 2-152 (257)
248 1yiq_A Quinohemoprotein alcoho 98.0 0.00037 1.3E-08 83.5 23.9 81 439-519 454-541 (689)
249 3mpr_A Putative endonuclease/e 98.0 1.1E-05 3.8E-10 86.3 9.2 134 553-719 6-162 (298)
250 1mda_H Methylamine dehydrogena 98.0 0.00015 5E-09 80.2 18.2 90 152-271 47-158 (368)
251 1zwx_A SMCL, sphingomyelinase- 98.0 2.1E-05 7.1E-10 83.9 10.2 46 674-719 128-179 (301)
252 3iuj_A Prolyl endopeptidase; h 98.0 0.00014 4.8E-09 87.2 18.6 105 422-526 236-358 (693)
253 1npe_A Nidogen, entactin; glyc 97.8 0.014 4.8E-07 60.4 29.4 74 422-495 169-246 (267)
254 2jc4_A Exodeoxyribonuclease II 97.8 3.4E-05 1.2E-09 79.8 8.8 125 555-718 2-130 (256)
255 2ddr_A Sphingomyelin phosphodi 97.8 0.00011 3.6E-09 78.4 11.7 46 674-719 128-179 (306)
256 1mda_H Methylamine dehydrogena 97.8 0.001 3.5E-08 73.5 19.9 101 427-529 219-348 (368)
257 1kb0_A Quinohemoprotein alcoho 97.7 0.0031 1.1E-07 75.4 25.2 72 440-512 457-535 (677)
258 1vyb_A ORF2 contains A reverse 97.7 0.00012 4E-09 74.7 10.6 113 553-703 7-121 (238)
259 3i41_A Beta-hemolysin; beta to 97.7 7E-05 2.4E-09 81.0 9.3 46 674-719 147-198 (317)
260 2qe8_A Uncharacterized protein 97.6 0.0022 7.5E-08 69.5 19.0 84 242-349 17-110 (343)
261 1wdu_A TRAS1 ORF2P; four-layer 97.5 0.00018 6.3E-09 74.2 8.8 120 553-718 19-143 (245)
262 2voa_A AF_EXO, XTHA, exodeoxyr 97.5 0.00044 1.5E-08 71.4 11.2 37 554-594 2-38 (257)
263 2o3h_A DNA-(apurinic or apyrim 97.5 6.7E-05 2.3E-09 79.3 4.8 129 553-719 28-163 (285)
264 2jc5_A Exodeoxyribonuclease; h 97.5 0.00015 5.3E-09 74.9 7.4 127 554-718 2-133 (259)
265 1npe_A Nidogen, entactin; glyc 97.4 0.065 2.2E-06 55.3 27.4 104 423-526 125-237 (267)
266 3c75_H MADH, methylamine dehyd 97.3 0.014 4.7E-07 65.6 21.7 116 201-349 82-217 (426)
267 1hd7_A DNA-(apurinic or apyrim 97.2 0.00026 8.8E-09 76.4 5.6 129 553-719 61-196 (318)
268 2j63_A AP-endonuclease; base e 97.2 0.00071 2.4E-08 77.0 9.2 38 553-594 149-190 (467)
269 3nol_A Glutamine cyclotransfer 97.1 0.028 9.7E-07 58.6 19.9 172 242-515 43-243 (262)
270 2iwa_A Glutamine cyclotransfer 97.1 0.059 2E-06 56.4 22.5 186 243-527 22-237 (266)
271 2ei9_A Non-LTR retrotransposon 96.9 0.00063 2.1E-08 70.5 5.0 36 554-593 8-43 (240)
272 1kv9_A Type II quinohemoprotei 96.9 0.15 5.1E-06 60.6 26.4 77 438-515 436-520 (668)
273 3g91_A MTH0212, exodeoxyribonu 96.9 0.00051 1.7E-08 71.7 3.9 38 554-595 4-42 (265)
274 1kv9_A Type II quinohemoprotei 96.8 0.038 1.3E-06 65.8 19.6 54 478-531 437-492 (668)
275 2a40_B Deoxyribonuclease-1; WA 96.8 0.0026 8.8E-08 66.3 8.2 70 630-702 60-139 (260)
276 3mbr_X Glutamine cyclotransfer 96.7 0.18 6.3E-06 51.9 21.8 177 239-515 16-222 (243)
277 1w6s_A Methanol dehydrogenase 96.7 0.16 5.5E-06 59.5 24.1 66 206-279 124-199 (599)
278 2ad6_A Methanol dehydrogenase 96.7 0.11 3.6E-06 60.7 22.5 68 203-278 115-192 (571)
279 2iwa_A Glutamine cyclotransfer 96.6 0.024 8.3E-07 59.4 13.9 109 422-530 23-138 (266)
280 2fp8_A Strictosidine synthase; 96.5 0.15 5E-06 54.2 20.4 103 422-526 187-312 (322)
281 3v65_B Low-density lipoprotein 96.5 1.2 4E-05 49.0 28.0 99 144-271 89-190 (386)
282 3nok_A Glutaminyl cyclase; bet 96.5 0.17 6E-06 52.7 19.6 158 133-349 55-218 (268)
283 3nol_A Glutamine cyclotransfer 96.3 0.15 5.1E-06 53.1 18.2 160 133-350 43-210 (262)
284 2p4o_A Hypothetical protein; p 96.3 1.3 4.4E-05 46.5 27.6 70 192-271 32-104 (306)
285 1ijq_A LDL receptor, low-densi 96.3 1.5 5.1E-05 46.5 29.8 102 145-271 4-108 (316)
286 3sov_A LRP-6, low-density lipo 96.3 1.5 5.3E-05 46.7 27.2 102 144-271 6-110 (318)
287 2ece_A 462AA long hypothetical 96.3 0.9 3.1E-05 50.9 25.1 68 196-272 142-238 (462)
288 1fwx_A Nitrous oxide reductase 96.2 0.53 1.8E-05 54.6 23.2 258 141-488 100-431 (595)
289 3v64_C Agrin; beta propeller, 96.1 2 6.7E-05 46.4 30.5 99 144-271 46-147 (349)
290 3p5b_L Low density lipoprotein 96.0 2.4 8.3E-05 46.6 31.7 103 144-271 85-190 (400)
291 3ngq_A CCR4-NOT transcription 96.0 0.0055 1.9E-07 68.1 5.7 31 689-719 195-225 (398)
292 2ad6_A Methanol dehydrogenase 95.8 3.6 0.00012 47.6 28.8 82 438-521 442-532 (571)
293 2ece_A 462AA long hypothetical 95.8 1.1 3.8E-05 50.3 22.9 73 196-273 86-175 (462)
294 3nok_A Glutaminyl cyclase; bet 95.7 0.053 1.8E-06 56.6 11.3 107 422-531 57-168 (268)
295 3m0c_C LDL receptor, low-densi 95.6 5.7 0.0002 47.9 31.0 77 191-271 423-502 (791)
296 1k3i_A Galactose oxidase precu 95.6 1.3 4.5E-05 52.1 24.4 70 196-271 190-274 (656)
297 1flg_A Protein (quinoprotein e 95.6 2.7 9.1E-05 48.9 26.6 85 438-523 464-557 (582)
298 1sr4_B CDT B, cytolethal diste 95.6 0.08 2.7E-06 55.0 11.9 37 676-718 121-157 (261)
299 1flg_A Protein (quinoprotein e 95.5 1 3.5E-05 52.5 22.8 52 478-530 465-519 (582)
300 2xe4_A Oligopeptidase B; hydro 95.5 0.39 1.3E-05 57.8 19.5 102 424-525 275-396 (751)
301 4hw6_A Hypothetical protein, I 95.5 4.2 0.00014 45.3 27.7 59 193-260 140-200 (433)
302 3tc9_A Hypothetical hydrolase; 95.0 2.6 8.7E-05 47.0 23.2 58 193-259 138-197 (430)
303 2xbg_A YCF48-like protein; pho 95.0 4.4 0.00015 43.0 26.7 103 421-524 206-319 (327)
304 3mbr_X Glutamine cyclotransfer 95.0 0.24 8.2E-06 51.0 13.2 107 422-530 23-136 (243)
305 1w6s_A Methanol dehydrogenase 95.0 2.7 9.2E-05 49.1 24.0 77 438-516 451-536 (599)
306 1fwx_A Nitrous oxide reductase 94.6 0.76 2.6E-05 53.3 17.4 92 423-515 280-406 (595)
307 3v64_C Agrin; beta propeller, 93.8 8.4 0.00029 41.3 29.1 103 422-524 161-272 (349)
308 3p5b_L Low density lipoprotein 93.7 9.9 0.00034 41.6 29.3 104 422-525 204-318 (400)
309 4a0p_A LRP6, LRP-6, low-densit 93.6 14 0.00048 43.2 30.4 72 192-271 37-111 (628)
310 4b8c_D Glucose-repressible alc 93.4 0.013 4.3E-07 70.7 -0.4 33 687-719 545-577 (727)
311 3m0c_C LDL receptor, low-densi 93.4 18 0.00061 43.6 29.2 103 422-524 516-629 (791)
312 2xbg_A YCF48-like protein; pho 92.9 11 0.00037 39.9 24.2 64 422-486 252-320 (327)
313 2f1n_A CDT B, cytolethal diste 92.7 0.39 1.3E-05 49.5 9.5 39 675-719 129-167 (262)
314 3v65_B Low-density lipoprotein 92.5 14 0.00048 40.1 27.8 103 422-524 204-315 (386)
315 1ijq_A LDL receptor, low-densi 92.5 12 0.00041 39.3 29.8 103 423-525 123-236 (316)
316 4hw6_A Hypothetical protein, I 92.4 16 0.00054 40.5 26.1 107 137-272 143-260 (433)
317 1n7d_A LDL receptor, low-densi 91.9 0.37 1.2E-05 57.6 9.5 72 423-494 543-621 (699)
318 4a0p_A LRP6, LRP-6, low-densit 90.9 29 0.00099 40.5 30.2 102 423-524 126-234 (628)
319 2ism_A Putative oxidoreductase 88.3 27 0.00092 37.3 19.9 25 244-268 33-57 (352)
320 3qqz_A Putative uncharacterize 87.6 27 0.00093 35.7 20.6 73 193-270 71-150 (255)
321 3sov_A LRP-6, low-density lipo 87.1 32 0.0011 36.1 25.4 103 423-525 125-236 (318)
322 1n7d_A LDL receptor, low-densi 86.2 4.9 0.00017 47.7 13.5 86 440-525 519-612 (699)
323 3kya_A Putative phosphatase; s 83.2 66 0.0023 36.3 25.3 61 193-262 140-214 (496)
324 3s94_A LRP-6, low-density lipo 81.8 83 0.0028 36.5 26.4 73 192-271 40-115 (619)
325 2p4o_A Hypothetical protein; p 81.2 53 0.0018 33.8 27.9 86 428-515 175-276 (306)
326 3pbp_A Nucleoporin NUP82; beta 80.5 14 0.00047 41.1 12.8 121 132-271 23-158 (452)
327 2p9w_A MAL S 1 allergenic prot 77.1 81 0.0028 33.6 21.8 68 196-270 17-108 (334)
328 3amr_A 3-phytase; beta-propell 76.9 85 0.0029 33.7 24.4 66 422-487 182-262 (355)
329 3s94_A LRP-6, low-density lipo 75.6 1.2E+02 0.0042 35.0 28.7 72 192-271 349-423 (619)
330 2xe4_A Oligopeptidase B; hydro 75.0 12 0.0004 44.8 11.3 107 421-528 175-305 (751)
331 1tl2_A L10, protein (tachylect 70.9 7.8 0.00027 39.2 7.0 66 193-270 42-115 (236)
332 3b7f_A Glycosyl hydrolase, BNR 70.6 64 0.0022 34.6 15.2 93 397-489 24-148 (394)
333 3a9g_A Putative uncharacterize 69.2 29 0.001 37.1 11.9 69 420-488 29-114 (354)
334 1k3i_A Galactose oxidase precu 64.8 26 0.00089 40.8 11.2 103 425-527 191-323 (656)
335 3pbp_A Nucleoporin NUP82; beta 62.5 29 0.00099 38.5 10.0 113 142-264 77-205 (452)
336 1tl2_A L10, protein (tachylect 58.6 15 0.0005 37.2 6.2 61 195-267 91-159 (236)
337 3ei3_A DNA damage-binding prot 57.1 3.7E+02 0.013 33.6 35.2 84 441-527 808-913 (1158)
338 2ism_A Putative oxidoreductase 55.5 91 0.0031 33.0 12.7 68 420-488 31-114 (352)
339 3amr_A 3-phytase; beta-propell 52.7 1.9E+02 0.0065 31.0 14.3 73 195-269 133-208 (355)
340 3s25_A Hypothetical 7-bladed b 50.8 2E+02 0.0068 29.8 14.1 79 440-522 88-171 (302)
341 1bpo_A Protein (clathrin); cla 50.6 3E+02 0.01 30.7 15.4 202 102-348 61-296 (494)
342 3tc9_A Hypothetical hydrolase; 50.5 40 0.0014 37.1 8.9 72 193-271 227-301 (430)
343 2p9w_A MAL S 1 allergenic prot 50.0 1.1E+02 0.0039 32.5 11.9 88 439-526 99-214 (334)
344 4gq2_M Nucleoporin NUP120; bet 48.0 53 0.0018 40.4 10.2 34 191-224 235-268 (950)
345 3das_A Putative oxidoreductase 42.8 1.6E+02 0.0055 31.4 11.9 71 193-269 33-114 (347)
346 2xzh_A Clathrin heavy chain 1; 42.3 3.5E+02 0.012 28.9 15.2 172 132-356 112-305 (365)
347 1xi4_A Clathrin heavy chain; a 42.2 1.6E+02 0.0056 37.7 13.1 100 148-271 122-235 (1630)
348 1cru_A Protein (soluble quinop 39.1 2E+02 0.0069 31.7 12.4 58 193-256 28-95 (454)
349 3pt1_A UPF0364 protein YMR027W 37.9 6.7 0.00023 44.0 -0.1 18 758-775 373-390 (471)
350 3sre_A PON1, serum paraoxonase 35.7 1.4E+02 0.0047 32.0 10.0 70 192-270 165-251 (355)
351 3b7f_A Glycosyl hydrolase, BNR 34.3 2.2E+02 0.0075 30.2 11.6 92 429-521 21-141 (394)
352 4gq2_M Nucleoporin NUP120; bet 33.6 1E+02 0.0035 37.8 9.5 37 313-349 237-274 (950)
353 3a9g_A Putative uncharacterize 31.7 81 0.0028 33.5 7.4 56 193-257 30-92 (354)
354 3s25_A Hypothetical 7-bladed b 31.0 2.5E+02 0.0085 29.0 10.9 89 434-525 161-251 (302)
355 2g8s_A Glucose/sorbosone dehyd 30.6 2.4E+02 0.0083 29.6 11.0 67 421-487 19-106 (353)
356 3sre_A PON1, serum paraoxonase 25.6 1.7E+02 0.0057 31.4 8.4 61 193-259 222-284 (355)
357 4fhn_B Nucleoporin NUP120; pro 25.6 1.1E+02 0.0037 38.4 7.9 103 239-348 171-275 (1139)
358 1cru_A Protein (soluble quinop 20.9 7E+02 0.024 27.2 12.8 58 420-477 27-99 (454)
359 3f7f_A Nucleoporin NUP120; nuc 20.8 89 0.0031 36.9 5.3 23 430-452 231-254 (729)
360 3kya_A Putative phosphatase; s 20.5 1.4E+02 0.0049 33.5 6.9 76 195-271 250-341 (496)
361 3das_A Putative oxidoreductase 20.2 7.7E+02 0.026 25.9 12.7 69 419-487 31-115 (347)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=6.3e-67 Score=560.20 Aligned_cols=257 Identities=28% Similarity=0.593 Sum_probs=230.4
Q ss_pred cccccceeEEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhh
Q 003171 546 YTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGK 625 (842)
Q Consensus 546 y~~~~~~~i~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~ 625 (842)
|+...+++|+++|||||+..| +++|.+||.....+||||||||||+++++..+. ..++...+.|.+.|.+
T Consensus 2 yt~~~~~~i~v~TwNvng~~~-~~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~---------~~~~~~~~~W~~~i~~ 71 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSP-KECLRLWLSNGIQAPDVYCVGFQELDLSKEAFF---------FHDTPKEEEWFKAVSE 71 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCC-CSCTHHHHSSSCCCCSEEEEEEECSCCSHHHHT---------TCCCHHHHHHHHHHHH
T ss_pred CceeeccEEEEEEEEcCCccC-chhHHHHhcccCCCCCeEEEEEEecccchhhhc---------ccCcchHHHHHHHHHH
Confidence 777888999999999999877 578999999766789999999999988653221 1233446899999999
Q ss_pred hccCCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcchH
Q 003171 626 ILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV 705 (842)
Q Consensus 626 ~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~ 705 (842)
+|+.+..|++|++.+|+||+|+||||+++.++|++|+++.|+||++|.+||||||+|||.+++++|||||||||||++++
T Consensus 72 ~L~~~~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~~ 151 (313)
T 3mtc_A 72 GLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEY 151 (313)
T ss_dssp HSCTTSCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGGH
T ss_pred hcCCCCCEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchHH
Confidence 99877789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCcccEEEEeccceeeecCCChHHHHH
Q 003171 706 NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARD 785 (842)
Q Consensus 706 ~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~ 785 (842)
++||+||.+|++++.|.+.... .....+.++|+|||||||||||+.++++++++
T Consensus 152 ~~Rn~d~~~I~~~l~f~~~~~~--------------------------~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~ 205 (313)
T 3mtc_A 152 ERRNQDYKDICSRMQFCQPDPS--------------------------LPPLTISNHDVILWLGDLNYRIEELDVEKVKK 205 (313)
T ss_dssp HHHHHHHHHHHHHCCBCCSCSS--------------------------SCCBCTTSSSEEEEEEECCCCBCSSCHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCc--------------------------cCCccccCCceEEEeccccccccCCCHHHHHH
Confidence 9999999999999999753221 01123678999999999999998779999999
Q ss_pred HhhhcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccccCCCCCCccccCC
Q 003171 786 FISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAEACSCL 841 (842)
Q Consensus 786 ~i~~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~Ydt~~ 841 (842)
+|++++|+.|+++|||+++|++|++|.||+|++|+|||||||++|+ +.|||++
T Consensus 206 ~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s---~~ydts~ 258 (313)
T 3mtc_A 206 LIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGS---DDWDTSE 258 (313)
T ss_dssp HHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTS---SSBCCST
T ss_pred HHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCC---ccccccc
Confidence 9999999999999999999999999999999999999999999998 6899973
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=9.9e-63 Score=529.14 Aligned_cols=240 Identities=29% Similarity=0.504 Sum_probs=203.5
Q ss_pred cccceeEEEEEEEeCCCCCCcccccccccCC-----------CCCceEEEEEeecccCccchhhhhhhhhhcccCCCcch
Q 003171 548 RMENLKILAGTWNVGQGRASQDALISWLGSA-----------ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVG 616 (842)
Q Consensus 548 ~~~~~~i~~~twNv~~~~~~~~~l~~~l~~~-----------~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (842)
+...++||++|||||++.| +++|.+||.+. ..++|||||||||+.+. .
T Consensus 4 ~~~~i~i~vgTwNv~g~~p-~~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~--------------------~ 62 (316)
T 4a9c_A 4 EPDMISVFIGTWNMGSVPP-PKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVG--------------------D 62 (316)
T ss_dssp --CEEEEEEEEEECTTSCC-CSCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSC--------------------H
T ss_pred CCCeEEEEEEEeEcCCcCC-CcchhHhhcccccccCcccccccCCCcEEEEeccccccc--------------------h
Confidence 3456899999999998755 67899999852 13479999999998541 2
Q ss_pred hhHHHHHhhhccC--CCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEE
Q 003171 617 HWWLDMIGKILDD--GSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFV 694 (842)
Q Consensus 617 ~~w~~~l~~~l~~--~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv 694 (842)
+.|.+.|+++|+. ...|.+|++.+|+||+|+||+|+++.++|++|++++|+||++|.+||||||+|||.+++++||||
T Consensus 63 ~~W~~~i~~~L~~~~~~~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FV 142 (316)
T 4a9c_A 63 REWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFV 142 (316)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEE
T ss_pred hHHHHHHHHHhccccCCCEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEE
Confidence 6799999999964 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcCCcchHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCcccEEEEeccceee
Q 003171 695 NCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYR 774 (842)
Q Consensus 695 ~~HLaa~~~~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyR 774 (842)
|||||||++++++||+||.+|++++.|...... ......++||||||||||||
T Consensus 143 n~HLaAg~~~~~~Rn~d~~~I~~~l~f~~~~~~---------------------------~~d~~~~~d~vfw~GDLNyR 195 (316)
T 4a9c_A 143 NCHLTSGNEKTARRNQNYLDILRLLSLGDRQLN---------------------------AFDISLRFTHLFWFGDLNYR 195 (316)
T ss_dssp EEECCCSTTCHHHHHHHHHHHHHHCCC----------------------------------CCTTTTSSEEEEEEECCCC
T ss_pred EeccccCchHHHHHHHHHHHHHHhCCCCCCCcC---------------------------ccccCCcCCeEEEcCCccCC
Confidence 999999999999999999999999998743110 00112468999999999999
Q ss_pred ecCCChHHHHHHhhhcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccccCCCCCCccc
Q 003171 775 LDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAEAC 838 (842)
Q Consensus 775 i~~~~~~~~~~~i~~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~Yd 838 (842)
|+. ++++++++|++++|+.|+++|||++||++|++|.||+|++|+|||||||++|+.+ .||
T Consensus 196 i~~-~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E~~i~F~PTYKy~~~s~~--~y~ 256 (316)
T 4a9c_A 196 LDM-DIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRD--TYA 256 (316)
T ss_dssp BSS-CHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTCSS--CBC
T ss_pred cCC-CHHHHHHHHhcccHHHHhccChHHHHHhcCCcccccccCCcccCCCccccCCCcc--ccc
Confidence 996 9999999999999999999999999999999999999999999999999999953 465
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=8.2e-59 Score=510.33 Aligned_cols=268 Identities=29% Similarity=0.487 Sum_probs=236.0
Q ss_pred CCCCcchhhhhhcccccccccccceeEEEEEEEeCCCCCCcccccccccCC-CCCceEEEEEeecc-cCccchhhhhhhh
Q 003171 528 PGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSA-ASDVGIVVVGLQEV-EMGAGFLAMSAAK 605 (842)
Q Consensus 528 ~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~~~~~l~~~l~~~-~~~~di~viglQE~-~~~~~~~~~~~~~ 605 (842)
|+|+++++..+|.+++.+|+...+++|+++||||++..| .++|.+||... ..+||||||||||+ +++++.+..
T Consensus 1 ~~p~~~~~~~~l~~r~~e~~~~~~~~i~v~TwNv~g~~~-~~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~---- 75 (347)
T 1i9z_A 1 YDPIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSA-TTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVIS---- 75 (347)
T ss_dssp CCHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEECTTCCC-CSCCHHHHSCSSSCCCSEEEEEEECSSCCC-----C----
T ss_pred CCchHHHHHHHHHHHHHhcCCCCCcEEEEEeEecCCCCC-chhHHHHhccccCCCCCEEEEEeEEeecCchhhhcc----
Confidence 578999999999999999999999999999999998877 56799999853 36789999999998 676653321
Q ss_pred hhcccCCCcchhhHHHHHhhhcc----CCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeE
Q 003171 606 ETVGLEGSAVGHWWLDMIGKILD----DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVG 681 (842)
Q Consensus 606 ~~~~~~~~~~~~~w~~~l~~~l~----~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~ 681 (842)
..+...+.|.+.|.++|+ .+..|.+|.+.+|+|++|+||+|+++.++|++|+++.++||++|.+||||||+
T Consensus 76 -----~~~~~~~~w~~~i~~~L~~~~~~~~~Y~~v~s~~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~ 150 (347)
T 1i9z_A 76 -----ADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVA 150 (347)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEE
T ss_pred -----cCchhHHHHHHHHHHHHhhcccCCCceeEEEEeeccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEE
Confidence 123345789999999996 35789999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCeEEEEEeecCcCCcchHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCc
Q 003171 682 LRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSE 761 (842)
Q Consensus 682 i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (842)
+||.+++++||||||||+||++++++||+||+.|++.|.|.+.. .+.+
T Consensus 151 vr~~~~~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~~--------------------------------~i~~ 198 (347)
T 1i9z_A 151 IRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGR--------------------------------SIFN 198 (347)
T ss_dssp EEEEETTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGGC--------------------------------CTTS
T ss_pred EEEEECCeEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCccc--------------------------------cccc
Confidence 99999999999999999999999999999999999999876421 2567
Q ss_pred ccEEEEeccceeeecCCChHHHHHHhhhcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccccCCCCCCccccCC
Q 003171 762 ADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAEACSCL 841 (842)
Q Consensus 762 ~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~Ydt~~ 841 (842)
+|++||||||||||+. +.++++++|++++|+.|+++|||+++|++|++|.||.|++|+|+|||||++++ +.|||++
T Consensus 199 ~d~v~~~GDlNyRi~~-~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~---~~yd~s~ 274 (347)
T 1i9z_A 199 HDYVVWFGDFNYRISL-TYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGT---DIYDTSD 274 (347)
T ss_dssp SSEEEEEEECCCCBSS-CHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTS---SCBCCST
T ss_pred CccEEEecccccccCC-CHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCC---ccccccc
Confidence 8999999999999996 99999999999999999999999999999999999999999999999999998 6899864
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=8.3e-58 Score=503.11 Aligned_cols=252 Identities=23% Similarity=0.374 Sum_probs=219.4
Q ss_pred cccccccceeEEEEEEEeCCCCCCcccccccccCC--CCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHH
Q 003171 544 FLYTRMENLKILAGTWNVGQGRASQDALISWLGSA--ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLD 621 (842)
Q Consensus 544 ~~y~~~~~~~i~~~twNv~~~~~~~~~l~~~l~~~--~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 621 (842)
..|+...+++|+++||||++.++.+++|.+||... ...||||||||||+... .+.|.+
T Consensus 18 ~~~~~~~~l~i~v~TwNv~g~~~~~~~L~~~l~~~~~~~~pDI~viGlQEi~~~--------------------~~~W~~ 77 (357)
T 2xsw_A 18 ARYFPDRNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQEGCSD--------------------RREWET 77 (357)
T ss_dssp HHHCTTCEEEEEEEEEECTTCSSCCSCCHHHHSCTTCCSCCSEEEEEEESCCSC--------------------HHHHHH
T ss_pred hhcCCCCCceEEEEEEecCCCCCCcccHHHHhccccccCCCCEEEEEeeeccch--------------------HHHHHH
Confidence 34677788999999999998776678999999642 34689999999998642 267999
Q ss_pred HHhhhccCCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCC
Q 003171 622 MIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAH 701 (842)
Q Consensus 622 ~l~~~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~ 701 (842)
.|.++|+ ..|+++.+.+|+|++|+||+|+++.++|++|+++.++||++|.+||||||+|||.+++++||||||||+||
T Consensus 78 ~l~~~L~--~~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~ 155 (357)
T 2xsw_A 78 RLQETLG--PHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSG 155 (357)
T ss_dssp HHHHHHC--TTEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCS
T ss_pred HHHHHhC--CcccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCC
Confidence 9999995 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCcccEEEEeccceeeecCCChH
Q 003171 702 LEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYD 781 (842)
Q Consensus 702 ~~~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~ 781 (842)
++++++||+||..|++.|.|.+.....++ .. ......+.++|+|||||||||||+. +++
T Consensus 156 ~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~----------~~----------~~~~~~~~~~d~vfw~GDlNyRi~~-~~~ 214 (357)
T 2xsw_A 156 DGKVAERLLDYTRTVQALVLPRNVPDTNP----------YR----------SSAADVTTRFDEVFWFGDFNFRLSG-GRT 214 (357)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCSSSCCSSG----------GG----------CBTTBGGGSSSEEEEEEECCCCBSS-CHH
T ss_pred CchHHHHHHHHHHHHHHhccccccccccc----------cc----------ccccccccccceEEEecccCccccc-chH
Confidence 99999999999999999999753221000 00 0011134578999999999999997 889
Q ss_pred HHHHHhh---hcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccccCCCCCCccccCC
Q 003171 782 EARDFIS---QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAEACSCL 841 (842)
Q Consensus 782 ~~~~~i~---~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~Ydt~~ 841 (842)
+++++++ +++|+.|+++|||+++|++|++|.||+|++|+|||||||++++ +.|||+.
T Consensus 215 ~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~~t---~~Ydts~ 274 (357)
T 2xsw_A 215 VVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGK---DTYDSTS 274 (357)
T ss_dssp HHHHHHC---CCCHHHHHTTBHHHHHHHHTSSSTTCBCCCCCSCCCBCBCTTS---SSBCCST
T ss_pred HHHHHHhhcchhhHHHHHhcChhHHHHhccccccCccccCCCCCCCccccCCC---ccccccC
Confidence 9999986 5789999999999999999999999999999999999999998 6899863
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=4.8e-46 Score=400.66 Aligned_cols=231 Identities=18% Similarity=0.299 Sum_probs=201.0
Q ss_pred ccceeEEEEEEEeCCCCCCcccccccccCC-CCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhc
Q 003171 549 MENLKILAGTWNVGQGRASQDALISWLGSA-ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKIL 627 (842)
Q Consensus 549 ~~~~~i~~~twNv~~~~~~~~~l~~~l~~~-~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l 627 (842)
..+++|+++||||++..| +++|.+|+... ..+||||||||||+.+.... ....+.|.+.|.+.|
T Consensus 4 ~~~~~i~V~T~Nv~~~~~-~~~l~~wl~~~~~~~pDI~viglQEv~~~~~~--------------~~~~~~w~~~l~~~L 68 (282)
T 2imq_X 4 PAQLSVHTVSWNSGHERA-PTNLEELLGLNSGETPDVIAVAVQGFGFQTDK--------------PQQGPACVKNFQSLL 68 (282)
T ss_dssp CSEEEEEEEEEEEETCCC-CSCCHHHHTCTTSCCCSEEEEEEEESCTTTCT--------------TCCHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEeCCCCcC-chhHHHHhcccccCCCCEEEEEeeeecccccc--------------chhhHHHHHHHHHhc
Confidence 346789999999987766 46789999743 36799999999999864321 123578999999999
Q ss_pred cCCCceEEEee--eeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcchH
Q 003171 628 DDGSTFERVGS--RQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV 705 (842)
Q Consensus 628 ~~~~~y~~v~s--~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~ 705 (842)
+ ...|.++++ .+|+|++++||+|+++.+.|+++++ +|+.+.+||||||++||.+++++||||||||+|+++++
T Consensus 69 ~-~~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~~ 143 (282)
T 2imq_X 69 T-SKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTS 143 (282)
T ss_dssp H-HTTEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCT
T ss_pred C-CCceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCchH
Confidence 6 467999999 8999999999999999888888765 45566789999999999999999999999999999889
Q ss_pred HHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCcccEEEEeccceeeecCCChHHHHH
Q 003171 706 NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARD 785 (842)
Q Consensus 706 ~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~ 785 (842)
++|+++++.|++.+.+ +.+++++||+||||||++. +.+++++
T Consensus 144 ~~R~~~~~~I~~~~~~-------------------------------------~~~~~~vi~~GDfN~r~~~-~~~~~~~ 185 (282)
T 2imq_X 144 TNTKYAYDTRLDYSKK-------------------------------------DDPSDFLFWIGDLNVRVET-NATHAKS 185 (282)
T ss_dssp TSSSSSCCGGGCTTSS-------------------------------------SSCCSEEEEEEECSCCBCS-CHHHHHH
T ss_pred HHHHHHHHHHHHhhhc-------------------------------------cCccceEEEecccccccCC-CHHHHHH
Confidence 9999999999876532 2357899999999999997 8999999
Q ss_pred HhhhcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccccCCCCCCccccCC
Q 003171 786 FISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAEACSCL 841 (842)
Q Consensus 786 ~i~~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~Ydt~~ 841 (842)
+|+++.|+.|+++|||+++|+ |.+|.||+|++|+|+|||||+.++ +.||+++
T Consensus 186 ~i~~~~~~~l~~~DqL~~~~~-~~~f~~f~e~~i~f~PTYk~~~~~---~~y~~~R 237 (282)
T 2imq_X 186 LVDQNNIDGLMAFDQLKKAKE-QKLFDGWTEPQVTFKPTYKFKPNT---DEYDLSA 237 (282)
T ss_dssp HHHTTCHHHHHTTBTHHHHHH-TTSSTTCBCCCCCSCCCBCBCTTS---SCBCTTS
T ss_pred HHhhccHHHHhhhhHHHHhhc-cccccccccCCcCCCCCccccCCC---ccccccC
Confidence 999999999999999999999 999999999999999999999998 6899876
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-34 Score=327.42 Aligned_cols=267 Identities=18% Similarity=0.217 Sum_probs=220.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|++|+|++++|+||+.||+|++||+.++ +...++++|.++|++|+|+|+|+ |+|||.|++|+|||+
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~--------~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 889999999999999999999999999999987 56788999999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.+.+....+. +| ...+.++++.+++..+++++ |++|++||+.++.++.++
T Consensus 180 ~~~~~~~~~~-------------------~h----------~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 230 (410)
T 1vyh_C 180 QGFECIRTMH-------------------GH----------DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230 (410)
T ss_dssp TSSCEEECCC-------------------CC----------SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCceeEEEc-------------------CC----------CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 7654322221 22 44678888988888888877 689999999999999999
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--c----CccccCCCce
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRT 422 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v 422 (842)
.+|......+. +.+++...+++..++..++|. . ..+..|...|
T Consensus 231 ~~h~~~v~~~~-------------------------------~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v 279 (410)
T 1vyh_C 231 TGHREWVRMVR-------------------------------PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279 (410)
T ss_dssp ECCSSCEEEEE-------------------------------ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred eCCCccEEEEE-------------------------------ECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceE
Confidence 87765433322 222333445566666555554 1 2355677888
Q ss_pred EEEEECCC--------------------C-cEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecC
Q 003171 423 EALTTSID--------------------G-MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMN 478 (842)
Q Consensus 423 ~al~~s~d--------------------g-~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~D 478 (842)
.+++++|+ | .+++|+.|++|++||+ +++++.++.+|..+|+++++ +|++|++|+.|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D 359 (410)
T 1vyh_C 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 359 (410)
T ss_dssp EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred EEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC
Confidence 99999885 3 4899999999999999 79999999999999999865 68899999999
Q ss_pred cEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 479 GIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 479 gtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
++|++||+. ++++.++.+|.+.|+++++ ++.+++|+|.|++||+|++
T Consensus 360 ~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 360 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999997 7889999999999999985 6779999999999999985
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=312.83 Aligned_cols=287 Identities=14% Similarity=0.061 Sum_probs=206.2
Q ss_pred ceeEEEEecCC--EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 133 CFLRTIVCTEE--QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 133 ~~~~~l~~~~~--~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
..+.++++..+ .|..++|.++|+||......... . .+...........+ ..+|.+++|+|+ +.|++|+
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~-----~---~~~~~~~~~~~~~~-~~~v~~~~~s~d-~~l~~~s 100 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDP-----C---AAPNEGFCSAGVQT-EAGVADLTWVGE-RGILVAS 100 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSG-----G---GTTCGGGCSEEEEE-SSCEEEEEEETT-TEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccc-----c---ccCCcceeeeeecc-CCCEEEEEEeCC-CeEEEEE
Confidence 45778887644 45557799999998421100000 0 00000001111122 568999999998 5788999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.||+||+||+.++. ........+.||.+.|++|+|+|+|+ |+||+.|++||+||+.+++....+
T Consensus 101 ~dg~v~lWd~~~~~----~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~----------- 165 (344)
T 4gqb_B 101 DSGAVELWELDENE----TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY----------- 165 (344)
T ss_dssp TTSEEEEEEECTTS----SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-----------
T ss_pred CCCEEEEEeccCCC----ceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE-----------
Confidence 99999999999862 11112234569999999999999998 789999999999999775432222
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (842)
.+| ...|.++++.+++. .+++++ |++|++||+++++++..+..+
T Consensus 166 --------~~h----------~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~---------------- 211 (344)
T 4gqb_B 166 --------RAH----------AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS---------------- 211 (344)
T ss_dssp --------CCC----------SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------------
T ss_pred --------cCc----------CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc----------------
Confidence 222 45678888877664 566665 689999999998775543211
Q ss_pred cccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC-Cc-EEEEeCCCeEEEE
Q 003171 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-GM-IWTGGANGLLLQW 445 (842)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d-g~-l~Sgs~DgtIrlW 445 (842)
.+...+.+++++|+ +. +++|+.||+|++|
T Consensus 212 -------------------------------------------------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~w 242 (344)
T 4gqb_B 212 -------------------------------------------------APGYLPTSLAWHPQQSEVFVFGDENGTVSLV 242 (344)
T ss_dssp ---------------------------------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred -------------------------------------------------eeeccceeeeecCCCCcceEEeccCCcEEEE
Confidence 11123456777774 44 6899999999999
Q ss_pred cC-CCCeeeeeecCCccEEEEEe--cC-CEEEEEecCcEEEEEeCCCcccccccccccCEEEEEe--CCC-EEEEEcCCC
Q 003171 446 DP-NGNRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV--GAG-YIFTLANHG 518 (842)
Q Consensus 446 D~-~g~~l~~l~~H~~~V~sls~--dG-~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~--dg~-~l~S~S~Dg 518 (842)
|+ ++++++++.+|...|+++++ +| ++|++|+.|++|+|||++...+..+.+|.+.|++|++ +++ .++|+|.|+
T Consensus 243 d~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 243 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp ESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence 99 78999999999999999875 66 4899999999999999985545567899999999985 554 577999999
Q ss_pred CeeeccccC
Q 003171 519 GIRGWNVTS 527 (842)
Q Consensus 519 tIrvWd~~~ 527 (842)
+|++|++..
T Consensus 323 ~v~~w~v~~ 331 (344)
T 4gqb_B 323 QVVHHVVPT 331 (344)
T ss_dssp CEEEEECCC
T ss_pred eEEEEECCC
Confidence 999999864
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.9e-33 Score=330.27 Aligned_cols=360 Identities=16% Similarity=0.193 Sum_probs=225.3
Q ss_pred eeEEEEecCC---EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 134 FLRTIVCTEE---QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 134 ~~~~l~~~~~---~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
.+.++++..+ .|.+ +.|++|++||..+..... .+ ..| ..+|.|++|+|+|++|+||
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~-----------------~l--~~H-~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS-----------------TF--GEH-TKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE-----------------EE--CCC-SSCEEEEEECTTSSEEEEE
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee-----------------ee--ccc-cCceEEEEECCCCCEEEEE
Confidence 4666666543 3554 569999999986532211 11 123 7899999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEec-------ccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCC
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQ-------AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPE 281 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~-------gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~ 281 (842)
+.|++||+||+.++ +....+. +|.++|++|+|+|+|+ |+|||.|++|||||+.+++....+...
T Consensus 209 s~D~~i~lwd~~~g--------~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 209 GGDGTIVLYNGVDG--------TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp ETTSCEEEEETTTC--------CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ECCCcEEEEECCCC--------cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 99999999999887 4556663 8999999999999998 789999999999999875433222110
Q ss_pred ---ce----------eeeEEEEeec--eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEE
Q 003171 282 ---ER----------HTAALIVERS--YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL 345 (842)
Q Consensus 282 ---~~----------~~~~l~~~~s--~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l 345 (842)
.. .+.+...++. +++.... ........+...+.++++++++..|++++ |++|++||+.++++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELG-SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC-CcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence 00 0111100110 0111100 00000111356789999999999999887 689999999999887
Q ss_pred EEe-ecCCceEeeeecccCCCc---ccccceEEEEEecCC----------------------------------------
Q 003171 346 KVF-NIDGQIENRVDMSLLPDF---AMEDEFKTKIVTSSK---------------------------------------- 381 (842)
Q Consensus 346 ~~l-~~~~~~~~~~~~s~~~~~---~~~~~~~~~~~s~~~---------------------------------------- 381 (842)
..+ ..|......+.+++.... ..+..++ +|....
T Consensus 360 ~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~ 437 (611)
T 1nr0_A 360 RVFPDVHATMITGIKTTSKGDLFTVSWDDHLK--VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 437 (611)
T ss_dssp ECSSCSCSSCEEEEEECTTSCEEEEETTTEEE--EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred eecccCCcceEEEEEECCCCcEEEEEcCCceE--EeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEE
Confidence 665 334443344444322110 1111111 221100
Q ss_pred ---------CCccceeeeEeecCcceEEecCCcEEEEee--cCcc-----ccCCCceEEEEECCCCc-EEEEeCCCeEEE
Q 003171 382 ---------KDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGGF-----GDDNRRTEALTTSIDGM-IWTGGANGLLLQ 444 (842)
Q Consensus 382 ---------~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~~-----~~~~~~v~al~~s~dg~-l~Sgs~DgtIrl 444 (842)
......++.|.+++..+++|..++..+++. .+.+ ..|...|.+++|+|||+ |++++.|++|++
T Consensus 438 ~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~ 517 (611)
T 1nr0_A 438 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIP 517 (611)
T ss_dssp ETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEE
Confidence 001123455666666667777776666554 1111 24566677777777776 677777777777
Q ss_pred EcC-C-CCeeee--eecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cc-cc-cccccc-ccCEEEEEe--CCCEEE
Q 003171 445 WDP-N-GNRLQD--FQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GN-LL-GGWVAH-SSPVIKMAV--GAGYIF 512 (842)
Q Consensus 445 WD~-~-g~~l~~--l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~-~i-~~l~gH-~~~V~sla~--dg~~l~ 512 (842)
||+ + ++++.+ +.+|...|+++++ ||++|++|+.|++|+|||++ +. ++ ..+.+| .+.|+++++ +++ |+
T Consensus 518 w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~ 596 (611)
T 1nr0_A 518 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IV 596 (611)
T ss_dssp EEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EE
T ss_pred EEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EE
Confidence 777 3 454443 2347777777653 67777777777777777775 32 33 566677 677777763 555 77
Q ss_pred EEcCCCCeeeccc
Q 003171 513 TLANHGGIRGWNV 525 (842)
Q Consensus 513 S~S~DgtIrvWd~ 525 (842)
|+|.|++||+|++
T Consensus 597 s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 597 SAGQDSNIKFWNV 609 (611)
T ss_dssp EEETTSCEEEEEC
T ss_pred EecCCCCEEEEec
Confidence 7777777777775
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.8e-32 Score=320.97 Aligned_cols=330 Identities=18% Similarity=0.231 Sum_probs=257.5
Q ss_pred eeEEEEecC--CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCTE--EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~~--~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.++.++... ..|.+ +.|+.|++||... .... . ...+ ..+|.+++++|++++|++|+
T Consensus 223 ~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~-----------------~--~~~~-~~~v~~v~~~~d~~~l~~~~ 281 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQ-----------------T--LTGH-SSSVNGVAFRPDGQTIASAS 281 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEE-----------------E--ECCC-SSCEEEEEECTTSSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEE-----------------E--EecC-CCCEEEEEEcCCCCEEEEEe
Confidence 456666653 34554 5689999999642 1110 1 1123 77899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.|++|++|+... +....+.+|.+.|++++|+|+++ |++++.|++|++||..+... ..+
T Consensus 282 ~d~~i~~w~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~~----------- 340 (577)
T 2ymu_A 282 DDKTVKLWNRNG---------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTL----------- 340 (577)
T ss_dssp TTSCEEEEETTS---------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE-EEE-----------
T ss_pred CCCEEEEEeCCC---------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee-EEE-----------
Confidence 999999999765 56778899999999999999998 78999999999999854211 111
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
.++ ...+.++++++++..+++++ +++|++||. +++++..+..|...+..+.+++.....+
T Consensus 341 --------~~~----------~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 401 (577)
T 2ymu_A 341 --------TGH----------SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA 401 (577)
T ss_dssp --------CCC----------SSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred --------eCC----------CCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEE
Confidence 111 44677888888888888876 578999995 6788888888777666777776544322
Q ss_pred --ccceEEEEEecCC--------CCccceeeeEeecCcceEEecCCcEEEEee-cC----ccccCCCceEEEEECCCCc-
Q 003171 369 --EDEFKTKIVTSSK--------KDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KG----GFGDDNRRTEALTTSIDGM- 432 (842)
Q Consensus 369 --~~~~~~~~~s~~~--------~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g----~~~~~~~~v~al~~s~dg~- 432 (842)
..+..+++|.... ....+..+.|.+++...+++..++..+++. .+ .+..|...|.+++|+|||+
T Consensus 402 ~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~ 481 (577)
T 2ymu_A 402 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT 481 (577)
T ss_dssp EEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCE
T ss_pred EEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCE
Confidence 1222233443211 122334677888888888888888777765 22 3456788999999999998
Q ss_pred EEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCcccccccccccCEEEEE--eCC
Q 003171 433 IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA--VGA 508 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla--~dg 508 (842)
|++++.|++|++||.+|++++++.+|...|+++++ +|++|++|+.||+|+|||.+++++.++.+|.+.|++|+ +|+
T Consensus 482 las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg 561 (577)
T 2ymu_A 482 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG 561 (577)
T ss_dssp EEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCC
Confidence 78999999999999999999999999999999864 79999999999999999999999999999999999998 488
Q ss_pred CEEEEEcCCCCeeecc
Q 003171 509 GYIFTLANHGGIRGWN 524 (842)
Q Consensus 509 ~~l~S~S~DgtIrvWd 524 (842)
++|+|+|.|++|++||
T Consensus 562 ~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 562 QTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEeCCCEEEEeC
Confidence 9999999999999997
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.1e-33 Score=304.88 Aligned_cols=260 Identities=16% Similarity=0.152 Sum_probs=214.9
Q ss_pred EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003171 144 QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 144 ~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~ 222 (842)
.|.+ +.|++|||||+.+.... . .+....| ..+|.|+++++++.+++||+.|++|++||+.+
T Consensus 50 ~l~tgs~D~~v~vW~~~~~~~~-~----------------~~~l~gh-~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~ 111 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDERLD-L----------------QWSLEGH-QLGVVSVDISHTLPIAASSSLDAHIRLWDLEN 111 (321)
T ss_dssp EEEEEETTSCEEEEEEETTEEE-E----------------EEEECCC-SSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEcCCCCEEEEECCCCCee-e----------------eeeeccC-CCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 4555 56999999998643211 0 0111223 78999999999999999999999999999998
Q ss_pred CccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccce
Q 003171 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHL 301 (842)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~ 301 (842)
+ +++..+.+|...|.+++|+|+|+ |++|+.|++|++|++.++.....+.. +
T Consensus 112 ~--------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~-------------------~- 163 (321)
T 3ow8_A 112 G--------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT-------------------R- 163 (321)
T ss_dssp T--------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC-------------------S-
T ss_pred C--------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC-------------------C-
Confidence 7 67788899999999999999998 78999999999999977543322211 1
Q ss_pred eccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecC
Q 003171 302 SVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSS 380 (842)
Q Consensus 302 ~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~ 380 (842)
...+.++++++++..+++++ +++|++||+++++++.++.+|
T Consensus 164 ---------~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h----------------------------- 205 (321)
T 3ow8_A 164 ---------GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH----------------------------- 205 (321)
T ss_dssp ---------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-----------------------------
T ss_pred ---------CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc-----------------------------
Confidence 23577888889898888877 679999999998876655322
Q ss_pred CCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecC
Q 003171 381 KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL 458 (842)
Q Consensus 381 ~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H 458 (842)
...|.+++|+|++. |++|+.|++|++||+ +++++.++.+|
T Consensus 206 --------------------------------------~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 247 (321)
T 3ow8_A 206 --------------------------------------AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247 (321)
T ss_dssp --------------------------------------SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC
T ss_pred --------------------------------------CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC
Confidence 23355788999987 789999999999999 68899999999
Q ss_pred CccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 459 PFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 459 ~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
...|.++++ +|++|++|+.|++|+|||+. ++++.++.+|.+.|+++++ +++.|+|++.|++|++||+
T Consensus 248 ~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999865 78999999999999999997 7889999999999999985 7889999999999999995
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.7e-32 Score=322.47 Aligned_cols=360 Identities=13% Similarity=0.110 Sum_probs=217.5
Q ss_pred cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 141 TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 141 ~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
+++.|..+.+++|++||+.+..... .+ ..| ..+|.|++|+|+|++||||+.||+||+||+
T Consensus 29 dg~~l~~~~~~~v~l~~~~~~~~~~-----------------~~--~~h-~~~v~~~~~spdg~~lasg~~d~~v~lWd~ 88 (611)
T 1nr0_A 29 AGDKIQYCNGTSVYTVPVGSLTDTE-----------------IY--TEH-SHQTTVAKTSPSGYYCASGDVHGNVRIWDT 88 (611)
T ss_dssp TSSEEEEEETTEEEEEETTCSSCCE-----------------EE--CCC-SSCEEEEEECTTSSEEEEEETTSEEEEEES
T ss_pred CCCEEEeCCCCEEEEecCCCcccCe-----------------Ee--cCC-CCceEEEEECCCCcEEEEEeCCCCEEEeEC
Confidence 3556666778899999997543221 12 234 779999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCC----CcEEEEeCCCcccee----------ecCCCce-e
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG----GGIKIWPWEAIEKAL----------SLKPEER-H 284 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D----gtIrvWd~~t~~~~l----------~~~~~~~-~ 284 (842)
.++. ......+.+|.++|.+|+|+|+|+ |++++.| ++|++||.......+ .+.+... .
T Consensus 89 ~~~~------~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~ 162 (611)
T 1nr0_A 89 TQTT------HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFR 162 (611)
T ss_dssp SSTT------CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCE
T ss_pred CCCc------ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeE
Confidence 7542 023456778888888888888887 5666654 367777643211111 1111111 1
Q ss_pred eeEEEEeece--eecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEee-------cCCce
Q 003171 285 TAALIVERSY--IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN-------IDGQI 354 (842)
Q Consensus 285 ~~~l~~~~s~--~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~-------~~~~~ 354 (842)
+.+...++.. ++.... ........+...|.++++++++..+++++ |++|+|||+.+++++.++. +|...
T Consensus 163 l~s~s~D~~v~lwd~~~~-~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~ 241 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 241 (611)
T ss_dssp EEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred EEEEeCCCeEEEEECCCC-eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCC
Confidence 1111111111 111100 00000111255789999999999988877 6899999999999998884 56665
Q ss_pred EeeeecccCCCcc----cccceEEEEEecC--------------------------------------------------
Q 003171 355 ENRVDMSLLPDFA----MEDEFKTKIVTSS-------------------------------------------------- 380 (842)
Q Consensus 355 ~~~~~~s~~~~~~----~~~~~~~~~~s~~-------------------------------------------------- 380 (842)
+..+.+++..... .+..+++|.+...
T Consensus 242 V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~ 321 (611)
T 1nr0_A 242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY 321 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc
Confidence 6677776654322 1223332211100
Q ss_pred CCCccceeeeEeecCcceEEecCCcEEEEee--cCc----c-ccC-----------------------------------
Q 003171 381 KKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG----F-GDD----------------------------------- 418 (842)
Q Consensus 381 ~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~----~-~~~----------------------------------- 418 (842)
.....+..+.|.+++..++++..++..++|. .+. + ..|
T Consensus 322 gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~ 401 (611)
T 1nr0_A 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVD 401 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSC
T ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccc
Confidence 0111223455666666666666666555553 110 0 001
Q ss_pred ----------------------------------------------CCceEEEEECCCCc-EEEEeCCCeEEEEcCCC-C
Q 003171 419 ----------------------------------------------NRRTEALTTSIDGM-IWTGGANGLLLQWDPNG-N 450 (842)
Q Consensus 419 ----------------------------------------------~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g-~ 450 (842)
...+.+++++|||+ |++|+.|++|++||+.+ +
T Consensus 402 ~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~ 481 (611)
T 1nr0_A 402 SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS 481 (611)
T ss_dssp TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE
T ss_pred ccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc
Confidence 12345667777776 67777777777777733 2
Q ss_pred e--eeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC--Cccccc--ccccccCEEEEEe--CCCEEEEEcCCCCe
Q 003171 451 R--LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGG--WVAHSSPVIKMAV--GAGYIFTLANHGGI 520 (842)
Q Consensus 451 ~--l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~--l~gH~~~V~sla~--dg~~l~S~S~DgtI 520 (842)
. +++ .+|...|+++++ +|++|++|+.|++|++||+. ++++.. +.+|.+.|+++++ |+++|+|+|.|++|
T Consensus 482 ~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v 560 (611)
T 1nr0_A 482 VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560 (611)
T ss_dssp EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcE
Confidence 2 233 567777777654 67777777777777777765 344433 4457777777763 66777777777777
Q ss_pred eeccccCC
Q 003171 521 RGWNVTSP 528 (842)
Q Consensus 521 rvWd~~~~ 528 (842)
|+|++..+
T Consensus 561 ~lW~~~~~ 568 (611)
T 1nr0_A 561 IVWNMNKP 568 (611)
T ss_dssp EEEETTCT
T ss_pred EEEECCCc
Confidence 77776543
No 12
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2e-32 Score=307.40 Aligned_cols=292 Identities=18% Similarity=0.210 Sum_probs=217.9
Q ss_pred eeEEEEec--CCEEEEecCCCEEEEeCCCCccccccccccccCCCCC-CCCCCeee--eeecCCCeEEEEEcCCCCEEEE
Q 003171 134 FLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGE-DGTAPFKE--SVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~g~~~V~~la~dpdg~~LaS 208 (842)
.+.+++.. +..|.++.++++++|++.++..... +...... .....+.. ...+...|.|++|+|+|++|++
T Consensus 66 ~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVAR-----LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEE-----ECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred EEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEE-----ecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 45566655 4466668899999999976543211 0000000 00000000 0001335999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeE
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
|+.||+|++||+.++ +....+.+|.+.|++++|+|+|+ |+||+.|++|++||+.+++....+.
T Consensus 141 ~~~d~~i~iwd~~~~--------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-------- 204 (393)
T 1erj_A 141 GAEDRLIRIWDIENR--------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-------- 204 (393)
T ss_dssp EETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--------
T ss_pred EcCCCeEEEEECCCC--------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE--------
Confidence 999999999999987 67788999999999999999997 7899999999999997654322111
Q ss_pred EEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCC
Q 003171 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (842)
....+..+++.+ ++..+++++ +++|++||+.+++++..+.....
T Consensus 205 ----------------------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~------------ 250 (393)
T 1erj_A 205 ----------------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE------------ 250 (393)
T ss_dssp ----------------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----------------
T ss_pred ----------------------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc------------
Confidence 023466677776 667777776 67999999999887655421100
Q ss_pred cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEE
Q 003171 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQ 444 (842)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrl 444 (842)
...+|...|.+++|+|+|. |++|+.|++|++
T Consensus 251 ------------------------------------------------~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 251 ------------------------------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp --------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ------------------------------------------------CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 0124556788899999997 899999999999
Q ss_pred EcC-C------------CCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--
Q 003171 445 WDP-N------------GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV-- 506 (842)
Q Consensus 445 WD~-~------------g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~-- 506 (842)
||+ + +.+..++.+|...|.++++ +|++|++|+.|++|++||++ ++++..+.+|.+.|.++++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 998 3 3466788899999999865 68899999999999999987 7889999999999999984
Q ss_pred ------CCCEEEEEcCCCCeeeccccCC
Q 003171 507 ------GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 507 ------dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
+++.++|+|.|++||+|++...
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CcCcCCCCCEEEEECCCCcEEECccccc
Confidence 3578999999999999997643
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.3e-32 Score=305.30 Aligned_cols=285 Identities=15% Similarity=0.118 Sum_probs=206.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcE
Q 003171 191 VSSVMCMVGDEASGVVWSGHR------DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGI 264 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~------DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtI 264 (842)
...|.|++|+|||++|+||+. ||+|++|+..++. ..........+|...|++|+|+|++++++++.||+|
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~----~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v 117 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA----PNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAV 117 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-------CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCE
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC----cceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEE
Confidence 678999999999999999998 7889999987752 122234456789999999999999999999999999
Q ss_pred EEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCc
Q 003171 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (842)
Q Consensus 265 rvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~ 343 (842)
||||+.+++....... ...+| ...|.++++++++..|++++ +++|++||+.+++
T Consensus 118 ~lWd~~~~~~~~~~~~---------------~~~~h----------~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~ 172 (357)
T 4g56_B 118 ELWEILEKESLLVNKF---------------AKYEH----------DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA 172 (357)
T ss_dssp EEC--------CCCCE---------------EECCC----------SSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE
T ss_pred EEeeccccceeEEEee---------------ccCCC----------CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 9999976542211100 00112 45688999999999888877 6799999999999
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC------cc
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG------GF 415 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g------~~ 415 (842)
++..+..|...+..+.+++... ...+.+..++..+++. .+ .+
T Consensus 173 ~~~~~~~h~~~v~~v~~s~~~~------------------------------~~~~s~~~dg~v~~wd~~~~~~~~~~~~ 222 (357)
T 4g56_B 173 VLKSYNAHSSEVNCVAACPGKD------------------------------TIFLSCGEDGRILLWDTRKPKPATRIDF 222 (357)
T ss_dssp EEEEECCCSSCEEEEEECTTCS------------------------------SCEEEEETTSCEEECCTTSSSCBCBCCC
T ss_pred EEEEEcCCCCCEEEEEEccCCC------------------------------ceeeeeccCCceEEEECCCCceeeeeee
Confidence 9999887765444444333211 1223444555555543 11 12
Q ss_pred ccCCCceEEEEECCCC-c-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cC-CEEEEEecCcEEEEEeCC-C
Q 003171 416 GDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLE-G 488 (842)
Q Consensus 416 ~~~~~~v~al~~s~dg-~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG-~~LasGs~DgtIrlWD~~-g 488 (842)
..+...+.+++++|++ . +++|+.|++|++||+ ++++++++.+|...|+++++ +| ++|++|+.|++|+|||++ +
T Consensus 223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 2355678899999975 3 789999999999999 78999999999999999875 56 589999999999999998 5
Q ss_pred cccccccccccCEEEEEe---CCCEEEEEcCCCCeeeccccCCCCCcchh
Q 003171 489 NLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSPGPLDSIL 535 (842)
Q Consensus 489 ~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrvWd~~~~~~~d~~l 535 (842)
++++. .+|.+.|++|++ |+++|+|+|.|++|++|++.+......++
T Consensus 303 ~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~~i 351 (357)
T 4g56_B 303 EVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENLI 351 (357)
T ss_dssp EEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---------
T ss_pred cEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccccc
Confidence 55554 489999999985 67899999999999999987655544433
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.5e-32 Score=297.59 Aligned_cols=270 Identities=18% Similarity=0.214 Sum_probs=212.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|++|+|++++|+||+.||+|++||+.++ .....+.+|...|.+++|+|+|+ |++|+.|++|++|++
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT--------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--------CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--------CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 779999999999999999999999999999887 67788899999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEee
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~ 349 (842)
.+.+..... .. .+.+| ...+.++.+.+++..+.++.+++|++||+.+++++.++.
T Consensus 127 ~~~~~~~~~------~~---------~~~~h----------~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 127 KTREGNVRV------SR---------ELAGH----------TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp TTCSBSCEE------EE---------EEECC----------SSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ccCCCccee------EE---------EecCC----------CccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEc
Confidence 764321110 00 01122 345666777665554444557899999999999988887
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--c----CccccCCCceE
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRTE 423 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v~ 423 (842)
+|...+..+. +.+++...++|..++..++|. . ..+..|...|.
T Consensus 182 ~h~~~v~~~~-------------------------------~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~ 230 (340)
T 1got_B 182 GHTGDVMSLS-------------------------------LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN 230 (340)
T ss_dssp CCSSCEEEEE-------------------------------ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEE
T ss_pred CCCCceEEEE-------------------------------ECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEE
Confidence 7655433333 333334445566666555554 1 13556888899
Q ss_pred EEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeec--CCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Ccccccccc
Q 003171 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY--LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (842)
Q Consensus 424 al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~--H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (842)
+++++|+|. +++|+.||+|++||+ +++.+.++.. +...|.++++ +|++|++|+.|++|+|||+. ++.+.++.+
T Consensus 231 ~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~ 310 (340)
T 1got_B 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec
Confidence 999999987 899999999999999 6777776653 3357888764 78999999999999999986 778899999
Q ss_pred cccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 497 HSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 497 H~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
|.+.|.++++ ++.+++|+|.|++|++||
T Consensus 311 h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999984 788999999999999997
No 15
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.3e-31 Score=306.81 Aligned_cols=360 Identities=16% Similarity=0.186 Sum_probs=260.7
Q ss_pred eeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~~~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+++|+.+.+ .|.+ +.|++|+|||.. ..... .+ ..| .++|.||+|+|+|++|+||+
T Consensus 18 ~V~~~a~spdg~~las~~~d~~v~iWd~~-~~~~~-----------------~l--~gh-~~~V~~l~fspdg~~las~~ 76 (577)
T 2ymu_A 18 SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ-----------------TL--TGH-SSSVWGVAFSPDGQTIASAS 76 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEE-----------------EE--ECC-SSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECC-CCEEE-----------------EE--eCC-CCCEEEEEECCCCCEEEEEe
Confidence 5677777644 4444 568999999953 22111 12 123 78999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.|++|++||+.+ +.+..+.+|.++|++|+|+|+|+ |++++.|+++++|+....... ...........+.
T Consensus 77 ~d~~i~vWd~~~---------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 146 (577)
T 2ymu_A 77 DDKTVKLWNRNG---------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVA 146 (577)
T ss_dssp TTSCEEEEETTS---------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE-EECCCSSCEEEEE
T ss_pred CCCEEEEEECCC---------CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee-eccCCCCceeeee
Confidence 999999999755 57888999999999999999998 789999999999998652211 1111111111111
Q ss_pred Ee------------eceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEe
Q 003171 290 VE------------RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIEN 356 (842)
Q Consensus 290 ~~------------~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~ 356 (842)
.. ......................+..+...+++..+++++ +++|++||. +++++..+..|...+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~ 225 (577)
T 2ymu_A 147 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVR 225 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEE
T ss_pred eecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEE
Confidence 00 000000000000001112345678888988888888876 678999995 6778888888776666
Q ss_pred eeecccCCCccc--ccceEEEEEecCC--------CCccceeeeEeecCcceEEecCCcEEEEee-cC----ccccCCCc
Q 003171 357 RVDMSLLPDFAM--EDEFKTKIVTSSK--------KDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KG----GFGDDNRR 421 (842)
Q Consensus 357 ~~~~s~~~~~~~--~~~~~~~~~s~~~--------~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g----~~~~~~~~ 421 (842)
.+.+++.....+ ..+..+++|.... ....+..+.|.+++...+++..++..+++. .+ .+.+|...
T Consensus 226 ~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~ 305 (577)
T 2ymu_A 226 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 305 (577)
T ss_dssp EEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCC
Confidence 666666443321 1121233333211 122344677888888888888888777765 22 34568889
Q ss_pred eEEEEECCCCc-EEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCcccccccccc
Q 003171 422 TEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHS 498 (842)
Q Consensus 422 v~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~ 498 (842)
|.+++++|++. +++++.|++|++||.+++.+..+.+|...|.++++ +|++|++|+.|++|++||.+++++.++.+|.
T Consensus 306 v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~ 385 (577)
T 2ymu_A 306 VWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 385 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCS
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCC
Confidence 99999999987 78999999999999999889999999999998864 7899999999999999999899999999999
Q ss_pred cCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 499 SPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 499 ~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
..|.++++ |++++++++.|++|++|+.
T Consensus 386 ~~v~~~~~s~dg~~l~~~~~d~~v~~~~~ 414 (577)
T 2ymu_A 386 SSVRGVAFSPDGQTIASASDDKTVKLWNR 414 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 99999984 7889999999999999995
No 16
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.9e-31 Score=282.95 Aligned_cols=268 Identities=16% Similarity=0.153 Sum_probs=209.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..+|.|++|+|++++|+||+.||+|++||+.++ .++..+++|..+|.+++|+|+++ |++||.|++||+||+
T Consensus 13 ~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 789999999999999999999999999999987 67888999999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCC-cEEEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR-ELLKV 347 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg-~~l~~ 347 (842)
.+++....+. +| ...+.++++++++..+++++ |++|++||++++ .+..+
T Consensus 85 ~~~~~~~~~~-------------------~h----------~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~ 135 (304)
T 2ynn_A 85 NTGEKVVDFE-------------------AH----------PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (304)
T ss_dssp TTCCEEEEEE-------------------CC----------SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE
T ss_pred CCCcEEEEEe-------------------CC----------CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh
Confidence 7755332221 22 45688899999888888887 689999999988 44566
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecC------cc-ccCCC
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GF-GDDNR 420 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g------~~-~~~~~ 420 (842)
+.+|...+..+.+++. ++...++|..++..++|... .+ ..+..
T Consensus 136 ~~~h~~~v~~v~~~p~------------------------------~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~ 185 (304)
T 2ynn_A 136 FEGHEHFVMCVAFNPK------------------------------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185 (304)
T ss_dssp ECCCCSCEEEEEECTT------------------------------CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTT
T ss_pred hcccCCcEEEEEECCC------------------------------CCCEEEEEeCCCeEEEEECCCCCccceeccCCcC
Confidence 7666554433333321 12234555666666655411 11 13446
Q ss_pred ceEEEEECC--CCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cccccc
Q 003171 421 RTEALTTSI--DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (842)
Q Consensus 421 ~v~al~~s~--dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (842)
.+..+.++| ++. |++|+.|++|++||+ +++++.++.+|...|.++++ ++++|++|+.||+|+|||++ ++++++
T Consensus 186 ~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~ 265 (304)
T 2ynn_A 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265 (304)
T ss_dssp CEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence 677788765 554 899999999999999 78999999999999998864 68899999999999999997 788999
Q ss_pred ccccccCEEEEEe--CCC--EEEEEcCCCCeeecccc
Q 003171 494 WVAHSSPVIKMAV--GAG--YIFTLANHGGIRGWNVT 526 (842)
Q Consensus 494 l~gH~~~V~sla~--dg~--~l~S~S~DgtIrvWd~~ 526 (842)
+.+|...|+++++ ++. ++++++ |.++.+|++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~ 301 (304)
T 2ynn_A 266 LNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLG 301 (304)
T ss_dssp ECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC
T ss_pred ccCCCccEEEEEECCCCCceEEEEec-CCceEEEEec
Confidence 9999999999984 443 466665 4557788764
No 17
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.4e-31 Score=290.44 Aligned_cols=282 Identities=15% Similarity=0.168 Sum_probs=207.3
Q ss_pred eEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 135 LRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 135 ~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
+..|+.+ +..|.+ +.|++|||||+.+...... ......| ..+|.|++|+|+|++|+||+.
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h-~~~v~~~~~sp~g~~l~s~s~ 81 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGH-QRTVRKVAWSPCGNYLASASF 81 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE----------------EEECSSC-SSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee----------------eeecccc-CCcEEEEEECCCCCEEEEEEC
Confidence 4456655 344554 5699999999865321100 0001123 779999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
|++|++|++..+. .+....+.+|.++|++|+|+|+|+ |+|||.|++|++||+.+..... ...
T Consensus 82 D~~v~iw~~~~~~------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~-------~~~---- 144 (345)
T 3fm0_A 82 DATTCIWKKNQDD------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE-------CVS---- 144 (345)
T ss_dssp TSCEEEEEECCC-------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE-------EEE----
T ss_pred CCcEEEEEccCCC------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE-------EEE----
Confidence 9999999987752 245678899999999999999998 7899999999999986532110 000
Q ss_pred eeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccc
Q 003171 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (842)
.+.+| ...+..++.++++..+++++ +++|++||..+++.....
T Consensus 145 -----~~~~h----------~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~--------------------- 188 (345)
T 3fm0_A 145 -----VLNSH----------TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA--------------------- 188 (345)
T ss_dssp -----EECCC----------CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEE---------------------
T ss_pred -----EecCc----------CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEE---------------------
Confidence 01112 45688889988888888877 679999998765431110
Q ss_pred cceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-
Q 003171 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP- 447 (842)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~- 447 (842)
.+.+|...|.+++|+|+|+ |++|+.|++|++||.
T Consensus 189 --------------------------------------------~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 189 --------------------------------------------TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp --------------------------------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred --------------------------------------------EecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 0223455678899999997 899999999999986
Q ss_pred CC---------------Ceeeeeec-CCccEEEEEe--cCCEEEEEecCcEEEEEeCCC-c---------cccccccccc
Q 003171 448 NG---------------NRLQDFQY-LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-N---------LLGGWVAHSS 499 (842)
Q Consensus 448 ~g---------------~~l~~l~~-H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g-~---------~i~~l~gH~~ 499 (842)
.. +++.++.+ |...|+++++ ++..|++|+.|++|++||.+. . ....+.+|.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~ 304 (345)
T 3fm0_A 225 LPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ 304 (345)
T ss_dssp CTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS
T ss_pred cCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC
Confidence 21 34555655 8899999875 688999999999999999752 1 1233568999
Q ss_pred CEEEEEe--CC-CEEEEEcCCCCeeeccccCCCC
Q 003171 500 PVIKMAV--GA-GYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 500 ~V~sla~--dg-~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
.|++|++ ++ ..++|+|.||+|++|++....+
T Consensus 305 ~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 305 DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp CEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred cEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 9999996 34 4899999999999999876543
No 18
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-30 Score=288.93 Aligned_cols=274 Identities=16% Similarity=0.212 Sum_probs=213.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|++|+|++++|+||+.||+|++||..++ +....+..|...|.+++|+|+|. |++|+.|++|++|++
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~--------~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT--------NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--------CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 789999999999999999999999999999886 56777889999999999999998 789999999999998
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
......... . .... +. .+...+.++.+.+++..+++++ |++|++||+.+++++.++
T Consensus 136 ~~~~~~~~~--~--~~~~---------~~----------~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 136 TFDKNENMA--A--KKKS---------VA----------MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CCCTTCCSG--G--GCEE---------EE----------ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ecccccccc--c--ccee---------ee----------ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 642211000 0 0000 01 1245677888888888887776 689999999999999999
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCce
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRT 422 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v 422 (842)
.+|...+..+.+.+.. .+...++|..++..++|. .+ .+..|...|
T Consensus 193 ~~h~~~v~~~~~~~~~-----------------------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v 243 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSE-----------------------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDV 243 (354)
T ss_dssp ECCSSCEEEEEECCCS-----------------------------SCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred cCCCCCeEEEEEEeCC-----------------------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCe
Confidence 8776543333332211 112335555565555554 12 345678899
Q ss_pred EEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecC--CccEEEEE--ecCCEEEEEecCcEEEEEeCC-Cccccccc
Q 003171 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL--PFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H--~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (842)
.+++++|++. +++|+.|++|++||+ .++++..+..+ ...+.+++ ++|++|++|+.|++|+|||+. ++.+..+.
T Consensus 244 ~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~ 323 (354)
T 2pbi_B 244 NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF 323 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE
Confidence 9999999987 899999999999999 56676666543 34677775 479999999999999999985 78889999
Q ss_pred ccccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 496 AHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 496 gH~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
+|.+.|+++++ |+++|+|+|.|++|++|+
T Consensus 324 ~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 324 GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999984 888999999999999996
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-31 Score=300.31 Aligned_cols=277 Identities=16% Similarity=0.215 Sum_probs=207.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|++|+|++++|+||+.||+|++||+.++ +....+.+|...|.+++|+|+|+ |++|+.|++|++|++
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~--------~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS--------QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--------EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 789999999999999999999999999999987 67888999999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-CCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
.+....-...... ..+.+| ...+..+.+.+. +..+++++ |++|++||+.+++++.+
T Consensus 138 ~~~~~~~~~~~~~------------~~~~gh----------~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 138 SSQADRDGNMPVS------------RVLTGH----------KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp CCCSSCCCSSTTC------------CBCCCC----------SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred CCCccccCCccce------------eeccCC----------CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence 6532100000000 001122 222333344343 34566665 68999999999999887
Q ss_pred eec-----CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEee-cCcceEEecCCcEEEEeec-------Cc
Q 003171 348 FNI-----DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAAK-------GG 414 (842)
Q Consensus 348 l~~-----~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~-~~~~~~~g~~~~v~~v~~~-------g~ 414 (842)
+.. |...+ .++.+.+ ++...+.|..++..++|.. ..
T Consensus 196 ~~~~~~~~h~~~v-------------------------------~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~ 244 (380)
T 3iz6_a 196 FGSEFPSGHTADV-------------------------------LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT 244 (380)
T ss_dssp ECCCSSSSCCSCE-------------------------------EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE
T ss_pred eecccCCCCccCe-------------------------------EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence 732 11111 1122222 2334566777777666651 13
Q ss_pred cccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCc-------cEEEEE--ecCCEEEEEecCcEEEE
Q 003171 415 FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-------AVQCLC--TFGSQIWVGYMNGIVQV 483 (842)
Q Consensus 415 ~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~-------~V~sls--~dG~~LasGs~DgtIrl 483 (842)
+.+|...|.+++++|+|. +++|+.||+|++||+ ++++++.+..|.. .|.+++ ++|++|++|+.||+|+|
T Consensus 245 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~v 324 (380)
T 3iz6_a 245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYV 324 (380)
T ss_dssp ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEE
T ss_pred ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEE
Confidence 456888999999999987 899999999999999 7888888765432 366665 57999999999999999
Q ss_pred EeCC-Ccccccc----cccccCEEEEE--eCCCEEEEEcCCCCeeeccccCC
Q 003171 484 LDLE-GNLLGGW----VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 484 WD~~-g~~i~~l----~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
||+. ++.+..+ .+|.+.|++++ +|+++|+|||.|++|++|++...
T Consensus 325 wd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 325 WDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 9986 6655554 78999999988 48899999999999999998653
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-30 Score=292.95 Aligned_cols=286 Identities=15% Similarity=0.166 Sum_probs=217.6
Q ss_pred ceeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~~~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
..+.+++.+.+ .|.+ +.|++|+|||+.+..... ....| ..+|.|++|+|++++|+||
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h-~~~V~~v~~~~~~~~l~sg 168 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER-------------------TLKGH-TDSVQDISFDHSGKLLASC 168 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE-------------------EECCC-SSCEEEEEECTTSSEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-------------------EEecc-CCcEEEEEEcCCCCEEEEE
Confidence 45777777644 4554 569999999997654321 11233 7899999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
+.||+|++||+.++ +++.++.+|...|++++|+|+|. |+|||.|++|++||+.++.....+.
T Consensus 169 s~D~~i~iwd~~~~--------~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~--------- 231 (410)
T 1vyh_C 169 SADMTIKLWDFQGF--------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT--------- 231 (410)
T ss_dssp ETTSCCCEEETTSS--------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE---------
T ss_pred eCCCeEEEEeCCCC--------ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe---------
Confidence 99999999999886 67788999999999999999998 7899999999999997754322221
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (842)
+| ...+.++...+++..+++++ |++|++||+.++++...+..|...+..+.+++.....
T Consensus 232 ----------~h----------~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 291 (410)
T 1vyh_C 232 ----------GH----------REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS 291 (410)
T ss_dssp ----------CC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGG
T ss_pred ----------CC----------CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCccccc
Confidence 12 34577788888888888877 6899999999999999998887766666665533221
Q ss_pred cccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCceEEEEECCCCc-EEEEeCCC
Q 003171 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGM-IWTGGANG 440 (842)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~al~~s~dg~-l~Sgs~Dg 440 (842)
..... ... . .......+...++|..++..++|. .+ .+.+|...|.+++++|+|. |++|+.|+
T Consensus 292 ~~~~~-----~~~---~---~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 360 (410)
T 1vyh_C 292 SISEA-----TGS---E---TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360 (410)
T ss_dssp GGGGC-----CSC---C----------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred chhhh-----ccc---c---ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 10000 000 0 000111234567788888777775 22 3556888999999999987 89999999
Q ss_pred eEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeC
Q 003171 441 LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 441 tIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~ 486 (842)
+|++||. ++++++++.+|...|+++++ ++.+|++|+.|++|+|||.
T Consensus 361 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred eEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999 78999999999999999875 6889999999999999986
No 21
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-30 Score=285.07 Aligned_cols=285 Identities=12% Similarity=0.122 Sum_probs=200.2
Q ss_pred eeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC
Q 003171 134 FLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 134 ~~~~l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D 212 (842)
.+.+++.+.+.|.+ +.|++|++||+.+...... ..+....| ..+|.|++|+|++++|++|+.|
T Consensus 16 ~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~---------------~~~~~~~h-~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLI---------------DVLDETAH-KKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEECSSSCCEEE---------------EEECTTCC-CSCEEEEEECTTSSEEEEEETT
T ss_pred ceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEE---------------EEEecCCc-cCCEEEEEECCCCCEEEEEeCC
Confidence 56777777775554 5699999999975311000 00101114 7799999999999999999999
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEe
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~ 291 (842)
++|++|++..... ..........+.+|.++|++|+|+|+|+ |+|||.|++|++||+....... ....
T Consensus 80 ~~v~iw~~~~~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~------~~~~----- 147 (330)
T 2hes_X 80 STVSIWAKEESAD-RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY------ECIS----- 147 (330)
T ss_dssp SCEEEEEC--------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC------EEEE-----
T ss_pred CcEEEEEcccCcC-ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe------EEEE-----
Confidence 9999999864210 0011245667899999999999999998 7899999999999984321100 0000
Q ss_pred eceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCc--EEEEeecCCceEeeeecccCCCccc
Q 003171 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE--LLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~--~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
.+.+| ...+.++++++++..|++++ |++|++||..++. ++.++
T Consensus 148 ----~~~~h----------~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~-------------------- 193 (330)
T 2hes_X 148 ----VLQEH----------SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL-------------------- 193 (330)
T ss_dssp ----EECCC----------SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE--------------------
T ss_pred ----EeccC----------CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc--------------------
Confidence 01122 45688899998888888887 6899999987652 22222
Q ss_pred ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC--Cc-EEEEeCCCeEEEE
Q 003171 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID--GM-IWTGGANGLLLQW 445 (842)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d--g~-l~Sgs~DgtIrlW 445 (842)
.+|...|.+++|+|+ +. |++|+.|++|++|
T Consensus 194 -----------------------------------------------~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw 226 (330)
T 2hes_X 194 -----------------------------------------------NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226 (330)
T ss_dssp -----------------------------------------------CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred -----------------------------------------------cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence 234455667788887 54 8999999999999
Q ss_pred cCC-C--------Ceeeeeec-CCccEEEEEec-CCEEEEEecCcEEEEEeCC-Cc--cc-cccccccc-CEEEEEe---
Q 003171 446 DPN-G--------NRLQDFQY-LPFAVQCLCTF-GSQIWVGYMNGIVQVLDLE-GN--LL-GGWVAHSS-PVIKMAV--- 506 (842)
Q Consensus 446 D~~-g--------~~l~~l~~-H~~~V~sls~d-G~~LasGs~DgtIrlWD~~-g~--~i-~~l~gH~~-~V~sla~--- 506 (842)
|+. + .++..+.+ |...|+++++. +.+|++|+.||+|+|||.. ++ ++ ..+.+|.. .|.++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~ 306 (330)
T 2hes_X 227 KYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLEL 306 (330)
T ss_dssp EEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC--
T ss_pred EecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecC
Confidence 983 3 35556665 99999999874 5589999999999999986 42 33 34578987 8999984
Q ss_pred -CCCEEEEEcCCCCeeeccccC
Q 003171 507 -GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 507 -dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+++.|+|+|.|++|++|++..
T Consensus 307 ~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 307 NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ---CCEEEEETTSEEEEEEC--
T ss_pred CCceEEEEecCCCcEEEEEecc
Confidence 467899999999999999754
No 22
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.98 E-value=2.3e-30 Score=279.63 Aligned_cols=267 Identities=21% Similarity=0.245 Sum_probs=212.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..+|.|++|+|++++|++|+.||+|++|++.++ +....+.+|..+|++++|+|+|+ |++|+.|++|++||+
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 789999999999999999999999999999887 56778899999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.+++....+ ++| ...+.++.+.+++..+++++ +++|++||+++++++..+
T Consensus 95 ~~~~~~~~~-------------------~~~----------~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 145 (312)
T 4ery_A 95 SSGKCLKTL-------------------KGH----------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145 (312)
T ss_dssp TTCCEEEEE-------------------ECC----------SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCCcEEEEE-------------------cCC----------CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe
Confidence 765432211 112 34577888888888888876 679999999999998888
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cCc----c-ccCCCc
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG----F-GDDNRR 421 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~----~-~~~~~~ 421 (842)
..|......+. +.+++...+++..++..+++. .+. + ..+...
T Consensus 146 ~~~~~~v~~~~-------------------------------~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 194 (312)
T 4ery_A 146 PAHSDPVSAVH-------------------------------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194 (312)
T ss_dssp CCCSSCEEEEE-------------------------------ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCC
T ss_pred cCCCCcEEEEE-------------------------------EcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCc
Confidence 76654333333 333333445555555555553 111 1 234557
Q ss_pred eEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE----E-ecCCEEEEEecCcEEEEEeCC-Cccccc
Q 003171 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL----C-TFGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (842)
Q Consensus 422 v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl----s-~dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (842)
+..++++|++. +++++.|+.|++||+ +++++..+.+|...+.++ . .++.+|++|+.||+|++||++ ++++..
T Consensus 195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 274 (312)
T 4ery_A 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274 (312)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhh
Confidence 88899999997 789999999999999 789999999887754432 3 357899999999999999997 678999
Q ss_pred ccccccCEEEEEe--CCCEEEEEc--CCCCeeeccc
Q 003171 494 WVAHSSPVIKMAV--GAGYIFTLA--NHGGIRGWNV 525 (842)
Q Consensus 494 l~gH~~~V~sla~--dg~~l~S~S--~DgtIrvWd~ 525 (842)
+.+|.+.|.++++ ++..+++++ .|++|++|+.
T Consensus 275 ~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred hhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 9999999999984 778899887 6999999985
No 23
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.98 E-value=1e-30 Score=285.85 Aligned_cols=239 Identities=17% Similarity=0.221 Sum_probs=194.5
Q ss_pred CCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEE
Q 003171 191 VSSVMCMVGDEA----SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpd----g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIr 265 (842)
..+|.|++|+|+ +++|+||+.|++||+|++.++. ......+.||..+|++++|++++. ++|||.|++||
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~------~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER------LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC------eeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 789999999874 6799999999999999987752 123456899999999999999998 68999999999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
+||+.+++....+.. + ...+..+++++++..+++++ +++|++||+.+++.
T Consensus 106 lWd~~~~~~~~~~~~-------------------~----------~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~ 156 (321)
T 3ow8_A 106 LWDLENGKQIKSIDA-------------------G----------PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156 (321)
T ss_dssp EEETTTTEEEEEEEC-------------------C----------TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE
T ss_pred EEECCCCCEEEEEeC-------------------C----------CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce
Confidence 999977543221111 1 22455677888888888887 57899999988776
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
...+.. +...+.+
T Consensus 157 ~~~~~~-------------------------------------------------------------------~~~~v~~ 169 (321)
T 3ow8_A 157 EYSLDT-------------------------------------------------------------------RGKFILS 169 (321)
T ss_dssp EEEEEC-------------------------------------------------------------------SSSCEEE
T ss_pred eEEecC-------------------------------------------------------------------CCceEEE
Confidence 443321 1223567
Q ss_pred EEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cccccccccccc
Q 003171 425 LTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS 499 (842)
Q Consensus 425 l~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~ 499 (842)
++++|+|+ |++|+.||+|++||+ ++++++++.+|..+|+++++ +|++|++|+.|++|+|||++ ++++.++.+|.+
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 249 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC
Confidence 88999988 899999999999999 78999999999999998865 78999999999999999997 678899999999
Q ss_pred CEEEEEe--CCCEEEEEcCCCCeeeccccCCCCC
Q 003171 500 PVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 500 ~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~~ 531 (842)
.|.++++ ++++++|++.|++|++||+.+..++
T Consensus 250 ~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence 9999985 7889999999999999998765443
No 24
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.98 E-value=6.2e-30 Score=278.80 Aligned_cols=277 Identities=18% Similarity=0.211 Sum_probs=205.9
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
.++|.+++++|++ ++|+||+.|++|++|++.+.. ......+..+++|..+|++++|+|+|+ |+|||.|++|||||
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~---~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDD---QKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD 93 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEET---TEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cceEEEEEccCCCccEEEEecCCccEEEecCCCCC---ccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 8899999999965 899999999999999986531 000134567899999999999999998 78999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
+.+++....+ .+| ...+.++++++++..+++++ |++|++||++ ++++.+
T Consensus 94 ~~~~~~~~~~-------------------~~h----------~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~ 143 (319)
T 3frx_A 94 VATGETYQRF-------------------VGH----------KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT 143 (319)
T ss_dssp TTTTEEEEEE-------------------ECC----------SSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEE
T ss_pred CCCCCeeEEE-------------------ccC----------CCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEE
Confidence 9775432211 122 45688888888888888887 6799999996 556677
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec------CccccCCCc
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRR 421 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~~~~~~~ 421 (842)
+.+|...+..+.+.+.... ...+...+.+..++..++|.. ..+.+|...
T Consensus 144 ~~~h~~~v~~~~~~~~~~~-------------------------~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~ 198 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKA-------------------------DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198 (319)
T ss_dssp ECCCSSCEEEEEECCC-------------------------------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSC
T ss_pred EeccCCcEEEEEEccCCCC-------------------------CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCc
Confidence 7666654433333321110 001123455556665555541 235578889
Q ss_pred eEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCC-cccccc--
Q 003171 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-NLLGGW-- 494 (842)
Q Consensus 422 v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g-~~i~~l-- 494 (842)
|.+++++|+|. |++|+.||+|++||+ +++++.++..| ..|.++++ +|.+|++++. ..|++|+++. .++..+
T Consensus 199 v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~ 276 (319)
T 3frx_A 199 INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRP 276 (319)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCc
Confidence 99999999997 899999999999999 68888888754 67888864 7888888764 5699999874 333322
Q ss_pred ------cccccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 495 ------VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 495 ------~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.+|...|.+++ +||++|++++.|++|++|++.+
T Consensus 277 ~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 35678899988 5899999999999999999764
No 25
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=1.5e-29 Score=278.14 Aligned_cols=275 Identities=17% Similarity=0.193 Sum_probs=196.0
Q ss_pred eeEEEEe--------cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCee-eeeecCCCeEEEEEcCCC
Q 003171 134 FLRTIVC--------TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK-ESVKGVSSVMCMVGDEAS 203 (842)
Q Consensus 134 ~~~~l~~--------~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~V~~la~dpdg 203 (842)
.+.+++. ++..|.+ +.|++|++||+.+...... ...+.. ...| ..+|.+++++|++
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-------------~~~~~~~l~~h-~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-------------FGIPHKALTGH-NHFVSDLALSQEN 88 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-------------SEEEEEEECCC-SSCEEEEEECSST
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-------------cccccchhccC-CCceEEEEECCCC
Confidence 4666665 2334555 5699999999865321110 000111 1123 7899999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCc
Q 003171 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (842)
Q Consensus 204 ~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~ 282 (842)
.+|+||+.|++||+||+.++ +....+.+|.++|++|+|+|+|+ |+||+.|++|++||+... ........
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~--------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~- 158 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTG--------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEK- 158 (343)
T ss_dssp TEEEEEETTSEEEEEETTSS--------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTT-
T ss_pred CEEEEEcCCCcEEEEECCCC--------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecc-
Confidence 99999999999999999987 67788999999999999999998 789999999999998632 11111100
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCC----------CEEEEeC-CCcEEEEEccCCcEEEEeecC
Q 003171 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR----------AKVWSAG-FLSFALWDARTRELLKVFNID 351 (842)
Q Consensus 283 ~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~----------~~v~s~s-~~tI~lWD~~tg~~l~~l~~~ 351 (842)
.+| ...+.++.+++.+ ..+++++ +++|++||. +++++.++
T Consensus 159 ---------------~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~--- 209 (343)
T 2xzm_R 159 ---------------ENH----------SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTF--- 209 (343)
T ss_dssp ---------------TSC----------SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEE---
T ss_pred ---------------cCC----------CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEE---
Confidence 011 2345566665544 4666666 678999994 33332222
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg 431 (842)
..|...|.+++++|+|
T Consensus 210 ----------------------------------------------------------------~~h~~~v~~~~~s~~g 225 (343)
T 2xzm_R 210 ----------------------------------------------------------------KAHESNVNHLSISPNG 225 (343)
T ss_dssp ----------------------------------------------------------------ECCSSCEEEEEECTTS
T ss_pred ----------------------------------------------------------------cCccccceEEEECCCC
Confidence 1234457788999999
Q ss_pred c-EEEEeCCCeEEEEcC-CC-CeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Ccccc--cc---------
Q 003171 432 M-IWTGGANGLLLQWDP-NG-NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLG--GW--------- 494 (842)
Q Consensus 432 ~-l~Sgs~DgtIrlWD~-~g-~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~--~l--------- 494 (842)
+ |++|+.||+|++||+ +. .....+ .+...|.++++ ++.+|++ +.|++|++||+. ++... ++
T Consensus 226 ~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 303 (343)
T 2xzm_R 226 KYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAE 303 (343)
T ss_dssp SEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBT
T ss_pred CEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhh
Confidence 7 899999999999999 54 344444 35667998865 5667765 568899999986 33322 33
Q ss_pred --cccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 495 --VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 495 --~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.+|...|+++++ ++++|++|+.||+|++|++.+
T Consensus 304 ~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 304 GQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp TBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred hhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 379999999985 788999999999999999754
No 26
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=8.5e-29 Score=316.75 Aligned_cols=406 Identities=14% Similarity=0.126 Sum_probs=268.3
Q ss_pred CCCcccccccCCCcccccccccccCCCCCCCceeecCCCCCccccCceeEEEEec--CCEEEE-ecCCCEEEEeCCCCcc
Q 003171 87 SSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYD 163 (842)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~ 163 (842)
+++-..++..||.+|. ++-+-.........+..|. ..+.+++.+ ++.|.+ +.|+.|+|||+.+...
T Consensus 623 ~s~~~~~l~s~~~d~~----i~vw~~~~~~~~~~~~~h~-------~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~ 691 (1249)
T 3sfz_A 623 FSQDGQRIASCGADKT----LQVFKAETGEKLLDIKAHE-------DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL 691 (1249)
T ss_dssp ECTTSSEEEEEETTSC----EEEEETTTCCEEEEECCCS-------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred ECCCCCEEEEEeCCCe----EEEEECCCCCEEEEeccCC-------CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce
Confidence 4566778888877764 3333222222223333332 356677765 335555 5689999999986543
Q ss_pred ccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccC
Q 003171 164 ESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR 241 (842)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp--dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~ 241 (842)
... + ..| ..+|.|++|+| ++.++++|+.||+|++||+.++ +...++.+|.
T Consensus 692 ~~~-----------------~--~~~-~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~--------~~~~~~~~h~ 743 (1249)
T 3sfz_A 692 VHT-----------------Y--DEH-SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK--------ECRNTMFGHT 743 (1249)
T ss_dssp EEE-----------------E--ECC-SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS--------SEEEEECCCS
T ss_pred EEE-----------------E--cCC-CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc--------chhheecCCC
Confidence 211 1 223 77999999999 5569999999999999999987 6788899999
Q ss_pred CcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeec-------------------------CCCceeeeEEEEeec--
Q 003171 242 GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSL-------------------------KPEERHTAALIVERS-- 293 (842)
Q Consensus 242 ~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~-------------------------~~~~~~~~~l~~~~s-- 293 (842)
++|++++|+|+|+ |++|+.||+|++||+.++...... .+....+... ....
T Consensus 744 ~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~~~~v~ 822 (1249)
T 3sfz_A 744 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA-AKNKVL 822 (1249)
T ss_dssp SCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE-ETTEEE
T ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE-cCCcEE
Confidence 9999999999998 789999999999999764322111 1111111111 0010
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc----
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM---- 368 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~---- 368 (842)
.+++............+...+.++++++++..+++++ +++|++||+.++..+..+.+|...+..+.+++.....+
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~ 902 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASD 902 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeC
Confidence 1111111100011112245678888999888888877 57899999999999998888877666666655432211
Q ss_pred ccceEEEE------------------------------------------------------------------------
Q 003171 369 EDEFKTKI------------------------------------------------------------------------ 376 (842)
Q Consensus 369 ~~~~~~~~------------------------------------------------------------------------ 376 (842)
+..+++|.
T Consensus 903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~ 982 (1249)
T 3sfz_A 903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED 982 (1249)
T ss_dssp TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC
Confidence 11111111
Q ss_pred -----EecC---------CCCccceeeeEeecCcceEEecCCcEEEEee--cC---ccccCCCceEEEEECCCCcEEEEe
Q 003171 377 -----VTSS---------KKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG---GFGDDNRRTEALTTSIDGMIWTGG 437 (842)
Q Consensus 377 -----~s~~---------~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g---~~~~~~~~v~al~~s~dg~l~Sgs 437 (842)
+... .....+..+.|.+++...+++..++..++|. .+ .+..+...+.++++++++.+++++
T Consensus 983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 1062 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS 1062 (1249)
T ss_dssp SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEE
T ss_pred CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE
Confidence 0000 0011122345555555666666666655554 12 233466677788888888888888
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEE
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYI 511 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l 511 (842)
.|++|++||+ ++++++++.+|...|.+++ ++|++|++|+.|++|++||+. ++++.++.+|.+.|+++++ +++++
T Consensus 1063 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~l 1142 (1249)
T 3sfz_A 1063 FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILL 1142 (1249)
T ss_dssp SSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEE
T ss_pred CCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEE
Confidence 8888888888 6788888888888888765 467888888888888888876 6778888888888888874 77788
Q ss_pred EEEcCCCCeeeccccCCCCCc
Q 003171 512 FTLANHGGIRGWNVTSPGPLD 532 (842)
Q Consensus 512 ~S~S~DgtIrvWd~~~~~~~d 532 (842)
++++.||+|++||+.+..++.
T Consensus 1143 at~~~dg~i~vwd~~~~~~~~ 1163 (1249)
T 3sfz_A 1143 ATGDDNGEIRIWNVSDGQLLH 1163 (1249)
T ss_dssp EEEETTSCCCEEESSSSCCCC
T ss_pred EEEeCCCEEEEEECCCCceEE
Confidence 888888888888887655443
No 27
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-29 Score=313.69 Aligned_cols=380 Identities=10% Similarity=0.070 Sum_probs=250.3
Q ss_pred CCCcccccccCCCcccccccccccCCCCCCCceeecCCCCCccccCceeEEEEecCCE-EEE-ecCCCEEEEeCCCCccc
Q 003171 87 SSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQ-LWA-GGENGLRVWNLKELYDE 164 (842)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~-~~D~~vrvWdl~~~~~~ 164 (842)
+.+..++|+.|+.+|. |+-+-.. ....+...+| ...++.|++..++ |.+ +.|++|+|||+.+....
T Consensus 25 fspdg~~lAsgs~Dg~----I~lw~~~-~~~~~~~~~~-------~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~ 92 (902)
T 2oaj_A 25 FDFTQNLLAIATVTGE----VHIYGQQ-QVEVVIKLED-------RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVL 92 (902)
T ss_dssp EETTTTEEEEEETTSE----EEEECST-TCEEEEECSS-------CCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEE
T ss_pred ECCCCCEEEEEeCCCE----EEEEeCC-CcEEEEEcCC-------CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEE
Confidence 4667788988888775 3333221 1111122122 2357777766454 554 57999999999764322
Q ss_pred cccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCccee----------
Q 003171 165 SESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEV---------- 234 (842)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~---------- 234 (842)
. .+ .+ ...|.|++|+|++++|++|+.||+|++||+.++ ...
T Consensus 93 ~-----------------~~---~~-~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~--------~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 93 T-----------------TV---FV-PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD--------QLSSFKLDNLQKS 143 (902)
T ss_dssp E-----------------EE---EC-SSCEEEEECCTTCSEEEEEETTSCEEEEETTTT--------EEEEEEECCHHHH
T ss_pred E-----------------EE---cC-CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC--------ccccceecccccc
Confidence 1 11 13 568999999999999999999999999999886 221
Q ss_pred -EEecccCCcEEEEEEecCC--CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccc-----e
Q 003171 235 -LSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG-----F 306 (842)
Q Consensus 235 -~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~-----~ 306 (842)
..+++|.++|++|+|+|++ .|++|+.|++| +||+.+.+....+..+.. .+...+ .
T Consensus 144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~----------------~g~~~~~~~~~~ 206 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELP----------------PFAPGGDFSEKT 206 (902)
T ss_dssp HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBC----------------TTCCCSTTCCCT
T ss_pred ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccC----------------CcCCCccccccc
Confidence 2357899999999999974 48899999999 999977543222211100 000000 0
Q ss_pred eeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE--ee---cC-------------CceEeeeecccC--CC
Q 003171 307 SSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV--FN---ID-------------GQIENRVDMSLL--PD 365 (842)
Q Consensus 307 ~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~--l~---~~-------------~~~~~~~~~s~~--~~ 365 (842)
...+...+.++++++++..+++++ |++|++||+++++++.. +. .| ...+..+.+++. .+
T Consensus 207 ~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd 286 (902)
T 2oaj_A 207 NEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPE 286 (902)
T ss_dssp TSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTT
T ss_pred ccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCC
Confidence 000134688999999999898887 67999999999988754 21 11 111222222110 00
Q ss_pred --c-----cccc-----c--------------------------------------------------------------
Q 003171 366 --F-----AMED-----E-------------------------------------------------------------- 371 (842)
Q Consensus 366 --~-----~~~~-----~-------------------------------------------------------------- 371 (842)
. ..+. .
T Consensus 287 ~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~ 366 (902)
T 2oaj_A 287 YTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGL 366 (902)
T ss_dssp EEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSE
T ss_pred CCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCcee
Confidence 0 0000 0
Q ss_pred -------eEEEEEecC-CC--C-------------ccc----------------------------------eeeeEeec
Q 003171 372 -------FKTKIVTSS-KK--D-------------KAQ----------------------------------SSFGFFQR 394 (842)
Q Consensus 372 -------~~~~~~s~~-~~--~-------------~~~----------------------------------~s~~~~~~ 394 (842)
..+++|.-. .. . ..+ .++.|+++
T Consensus 367 l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd 446 (902)
T 2oaj_A 367 ILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY 446 (902)
T ss_dssp EEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE
T ss_pred EEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc
Confidence 001122110 00 0 000 01233445
Q ss_pred CcceEEecCCcEEEEee--cCccc---------------cCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CC------
Q 003171 395 SRNAIMGAADAVRRVAA--KGGFG---------------DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG------ 449 (842)
Q Consensus 395 ~~~~~~g~~~~v~~v~~--~g~~~---------------~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g------ 449 (842)
+...++|+.|+..++|. .+.+. +|...|.+++|+|||+ |++|+.||+|+|||+ ++
T Consensus 447 g~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~ 526 (902)
T 2oaj_A 447 GTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVE 526 (902)
T ss_dssp EEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----
T ss_pred CcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCcc
Confidence 55677888888888876 23221 4667899999999998 799999999999998 44
Q ss_pred ---------------------------------------CeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCCC
Q 003171 450 ---------------------------------------NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEG 488 (842)
Q Consensus 450 ---------------------------------------~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~g 488 (842)
+++.++.+|..+|++++ +|| +||+|+.|++|+|||+++
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 527 NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp -----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred ccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence 24678889999999886 579 999999999999999885
Q ss_pred c-cc-----cccc-ccccCEEEEEeC----------CCEEEEEcCCCCeeeccc
Q 003171 489 N-LL-----GGWV-AHSSPVIKMAVG----------AGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 489 ~-~i-----~~l~-gH~~~V~sla~d----------g~~l~S~S~DgtIrvWd~ 525 (842)
. .+ +.+. +|++.|++|++. +.+|+||+.|++|++||+
T Consensus 606 ~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 606 PAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred CeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 4 22 4565 999999999865 358999999999999998
No 28
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=1.2e-28 Score=271.04 Aligned_cols=268 Identities=16% Similarity=0.180 Sum_probs=204.6
Q ss_pred eeEEEEecC--CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCTE--EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~~--~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+.+++... ..|.+ +.|++|++||+.+..... ....+ ..+|.+++|+|++++|++|+
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~-------------------~~~~~-~~~v~~~~~s~~~~~l~s~~ 116 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH-------------------AIPLR-SSWVMTCAYAPSGNYVACGG 116 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE-------------------EEECS-SSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce-------------------EeecC-CccEEEEEECCCCCEEEEEe
Confidence 466777653 34554 569999999987643221 11233 77899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
.|++|++|++.++. ........+.+|.+.|.+++|++++.|++|+.|++|++||+.+++....+.
T Consensus 117 ~d~~v~iw~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~----------- 181 (340)
T 1got_B 117 LDNICSIYNLKTRE----GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT----------- 181 (340)
T ss_dssp TTCEEEEEETTTCS----BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-----------
T ss_pred CCCeEEEEECccCC----CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEc-----------
Confidence 99999999998752 122345678899999999999999999999999999999997754322221
Q ss_pred eeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccc
Q 003171 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (842)
+| ...+.++++++++..+++++ +++|++||+++++++.++.+|...+..+.
T Consensus 182 --------~h----------~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~---------- 233 (340)
T 1got_B 182 --------GH----------TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC---------- 233 (340)
T ss_dssp --------CC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEE----------
T ss_pred --------CC----------CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEE----------
Confidence 12 44678888888888888877 68999999999999888877665433333
Q ss_pred cceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec--C----ccc--cCCCceEEEEECCCCc-EEEEeCCC
Q 003171 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--G----GFG--DDNRRTEALTTSIDGM-IWTGGANG 440 (842)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g----~~~--~~~~~v~al~~s~dg~-l~Sgs~Dg 440 (842)
|.+++...++|..++..+++.. + .+. .+...|.+++|+|+|. +++|+.|+
T Consensus 234 ---------------------~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~ 292 (340)
T 1got_B 234 ---------------------FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292 (340)
T ss_dssp ---------------------ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ---------------------EcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCC
Confidence 3333444455556655555541 1 111 1234688999999998 78999999
Q ss_pred eEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEe
Q 003171 441 LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 441 tIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (842)
+|++||+ +++++.++.+|..+|.++++ +|++|++|+.|++|+|||
T Consensus 293 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999 78999999999999999865 788999999999999997
No 29
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=1.2e-28 Score=267.25 Aligned_cols=276 Identities=19% Similarity=0.209 Sum_probs=195.1
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
.++|.||+|+|+ +++|+|||.||+||+||+.++. .....+...+++|.++|++++|+|+|+ |++|+.|++|++|+
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~---~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE---TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSS---SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC---cccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 889999999997 6899999999999999998752 111234567899999999999999998 78999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
............ ....+......+.+..+++++ ++.+++||+........
T Consensus 115 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~ 165 (340)
T 4aow_A 115 LTTGTTTRRFVG-----------------------------HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 165 (340)
T ss_dssp TTTTEEEEEEEC-----------------------------CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred ecccceeeeecC-----------------------------CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE
Confidence 865432211110 022344555666677777766 67899999977654322
Q ss_pred -eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--c----CccccCCC
Q 003171 348 -FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNR 420 (842)
Q Consensus 348 -l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~ 420 (842)
+..+......+.++.... ....+.+..++..+++. . ..+..|..
T Consensus 166 ~~~~~~~~v~~~~~~~~~~-----------------------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~ 216 (340)
T 4aow_A 166 QDESHSEWVSCVRFSPNSS-----------------------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 216 (340)
T ss_dssp CSSSCSSCEEEEEECSCSS-----------------------------SCEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred EeccccCcccceEEccCCC-----------------------------CcEEEEEcCCCEEEEEECCCCceeeEecCCCC
Confidence 222222222222211110 01123344444444443 1 13456788
Q ss_pred ceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEec-CCEEEEEecCcEEEEEeCCC-ccc-----
Q 003171 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEG-NLL----- 491 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~d-G~~LasGs~DgtIrlWD~~g-~~i----- 491 (842)
.|.+++++|+|. |++|+.|++|++||+ +++++..+.+| ..|.++++. +.++++++.|++|+|||+++ .++
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 295 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQ 295 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccc
Confidence 899999999997 789999999999999 67888888754 578888763 44666778899999999874 332
Q ss_pred ----ccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCC
Q 003171 492 ----GGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 492 ----~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
....+|...|++|++ |+++|+||+.||+|++||+++.
T Consensus 296 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 296 EVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp C-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred cceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 234589999999984 7889999999999999998764
No 30
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-29 Score=282.82 Aligned_cols=307 Identities=13% Similarity=0.144 Sum_probs=219.3
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~ 227 (842)
+.|+.|+|||+.+...... .....+ ..+|.|++|+|++++|++|+.||+|++|++.+..
T Consensus 42 ~~d~~v~iw~~~~~~~~~~-----------------~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~--- 100 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKP-----------------IASLQV-DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN--- 100 (416)
T ss_dssp CCCCCCEEEESSSGGGCSC-----------------SCCCCC-SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTT---
T ss_pred CCCCeEEEEEccCCCCCcE-----------------EEEEec-CCceEEEEECCCCCeEEEEccCCeEEEeeccccc---
Confidence 3588999999976432111 111113 6789999999999999999999999999998720
Q ss_pred CCCcceeEEecccCCcEEEEEEecC-CC-EEEeeCCCcEEEEeCCCcc------ceeecCCCceeeeEEEEeeceeeccc
Q 003171 228 DDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIE------KALSLKPEERHTAALIVERSYIDLRS 299 (842)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~t~~------~~l~~~~~~~~~~~l~~~~s~~~l~~ 299 (842)
........+.+|.++|++++|+|+ +. |++|+.|++|++||+.+.. ..+.... +.+
T Consensus 101 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----------------~~~ 163 (416)
T 2pm9_A 101 -NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ----------------SMS 163 (416)
T ss_dssp -SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC----------------SCC
T ss_pred -ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc----------------ccC
Confidence 111467788999999999999998 65 7899999999999997754 1111100 001
Q ss_pred ceeccceeeeecCCEEEEEEcCC-CCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEE
Q 003171 300 HLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (842)
Q Consensus 300 ~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (842)
| ...+.++++.++ +..+++++ +++|++||+.+++++..+..+....
T Consensus 164 ~----------~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---------------------- 211 (416)
T 2pm9_A 164 S----------VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS---------------------- 211 (416)
T ss_dssp S----------SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS----------------------
T ss_pred C----------CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc----------------------
Confidence 1 345677888877 56777766 6789999999999888876542100
Q ss_pred ecCCCCccceeeeEeecC-cceEEecCCc---EEEEee--c-----Cccc-cCCCceEEEEECC-CCc-EEEEeCCCeEE
Q 003171 378 TSSKKDKAQSSFGFFQRS-RNAIMGAADA---VRRVAA--K-----GGFG-DDNRRTEALTTSI-DGM-IWTGGANGLLL 443 (842)
Q Consensus 378 s~~~~~~~~~s~~~~~~~-~~~~~g~~~~---v~~v~~--~-----g~~~-~~~~~v~al~~s~-dg~-l~Sgs~DgtIr 443 (842)
........+.|.+++ ...+++..++ ..+++. . ..+. .|...|.+++++| ++. |++|+.|++|+
T Consensus 212 ---~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~ 288 (416)
T 2pm9_A 212 ---GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVL 288 (416)
T ss_dssp ---CCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEE
T ss_pred ---ccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEE
Confidence 000011123333333 2334444443 333332 1 1244 5778899999999 776 89999999999
Q ss_pred EEcC-CCCeeeeeecCCccEEEEEe--cC-CEEEEEecCcEEEEEeCC-Ccccccc------------------------
Q 003171 444 QWDP-NGNRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLE-GNLLGGW------------------------ 494 (842)
Q Consensus 444 lWD~-~g~~l~~l~~H~~~V~sls~--dG-~~LasGs~DgtIrlWD~~-g~~i~~l------------------------ 494 (842)
+||+ +++++.++.+|...|.++++ ++ .+|++|+.|++|+|||+. ++.....
T Consensus 289 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (416)
T 2pm9_A 289 LWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESK 368 (416)
T ss_dssp EECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CC
T ss_pred EeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccc
Confidence 9999 78999999999999998865 67 799999999999999986 3322221
Q ss_pred -----------cccccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 495 -----------VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 495 -----------~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
..|...|.+++ +||+++++++.|++|++|++.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 369 EKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp SCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred cccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 11666775554 6999999999999999999865
No 31
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=1.9e-28 Score=274.68 Aligned_cols=322 Identities=16% Similarity=0.161 Sum_probs=232.4
Q ss_pred EecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003171 139 VCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (842)
Q Consensus 139 ~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrl 217 (842)
..+++.|++ +.|+.|++||+.+...... + .+...+.+.++++++++|++|+.||+|++
T Consensus 65 s~~g~~l~~~~~d~~v~i~d~~~~~~~~~-----------------~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 123 (420)
T 3vl1_A 65 EKVGSHLYKARLDGHDFLFNTIIRDGSKM-----------------L----KRADYTAVDTAKLQMRRFILGTTEGDIKV 123 (420)
T ss_dssp EEEETTEEEEEETTEEEEEECCSEETTTT-----------------S----CSCCEEEEEEECSSSCEEEEEETTSCEEE
T ss_pred eecCCeEEEEEcCCcEEEEEecccceeeE-----------------E----ecCCceEEEEEecCCCEEEEEECCCCEEE
Confidence 344555665 5699999999976433211 1 11234555678999999999999999999
Q ss_pred EECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceee
Q 003171 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (842)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~ 296 (842)
||+.++ +....+.+|.+.|++++|+|+|+ |++|+.|++|++||+.+++....+
T Consensus 124 wd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~------------------ 177 (420)
T 3vl1_A 124 LDSNFN--------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL------------------ 177 (420)
T ss_dssp ECTTSC--------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE------------------
T ss_pred EeCCCc--------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE------------------
Confidence 999886 56666789999999999999998 789999999999999765432211
Q ss_pred cccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCc---eEeeeecccCCCcccccce
Q 003171 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQ---IENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~---~~~~~~~s~~~~~~~~~~~ 372 (842)
++| ...+.++++++++..+++++ +++|++||+++++++..+..+.. ....+.+.+.......
T Consensus 178 -~~h----------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 243 (420)
T 3vl1_A 178 -IGH----------RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLH--- 243 (420)
T ss_dssp -ECC----------SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCG---
T ss_pred -cCC----------CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceee---
Confidence 112 45678888888888888877 67899999999999988865321 2222222221111000
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----cc-ccCCCceEEEEECCCCc--EEEEeCCCeEE
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GF-GDDNRRTEALTTSIDGM--IWTGGANGLLL 443 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~-~~~~~~v~al~~s~dg~--l~Sgs~DgtIr 443 (842)
.. .......+.|.+++...++|..++..+++. .+ .+ ..+...|.+++++|++. +++|+.||+|+
T Consensus 244 -----~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~ 316 (420)
T 3vl1_A 244 -----EI--STSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLA 316 (420)
T ss_dssp -----GG--CCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred -----ec--ccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEE
Confidence 00 011223456667777778888888777765 11 11 23667899999999985 78999999999
Q ss_pred EEcC-CCC-eeeeeec-CCccEEEEE-ecCCEEEEEecCcEEEEEeCCC----------cccccccccccCEEEEE--eC
Q 003171 444 QWDP-NGN-RLQDFQY-LPFAVQCLC-TFGSQIWVGYMNGIVQVLDLEG----------NLLGGWVAHSSPVIKMA--VG 507 (842)
Q Consensus 444 lWD~-~g~-~l~~l~~-H~~~V~sls-~dG~~LasGs~DgtIrlWD~~g----------~~i~~l~gH~~~V~sla--~d 507 (842)
+||+ +++ .+..+.+ |...|.++. ++|++|++|+.|++|++||+.. .....+.+|.+.|.+++ ++
T Consensus 317 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 396 (420)
T 3vl1_A 317 QWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSD 396 (420)
T ss_dssp EEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECC
T ss_pred EEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccC
Confidence 9999 564 4777877 677888875 4788999999999999999753 12334668889998887 57
Q ss_pred CC---EEEEEcCCCCeeeccccCC
Q 003171 508 AG---YIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 508 g~---~l~S~S~DgtIrvWd~~~~ 528 (842)
++ .+++++.++.+++|++..|
T Consensus 397 ~~~~g~l~a~g~~g~~~~~~~~~~ 420 (420)
T 3vl1_A 397 DESNGEVLEVGKNNFCALYNLSNP 420 (420)
T ss_dssp SSSSCEEEEEETTTEEEEEESCC-
T ss_pred CCCcceEEEEcCCceEEEEeccCC
Confidence 77 7888888999999998653
No 32
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=8.6e-29 Score=273.78 Aligned_cols=239 Identities=14% Similarity=0.053 Sum_probs=179.3
Q ss_pred ceeEEEEecCC-EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 133 CFLRTIVCTEE-QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 133 ~~~~~l~~~~~-~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
..+.+++...+ .|.+ +.|++|||||+.+...... ..+....| .++|.||+|+|+|++|+||+
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~---------------~~~~~~~H-~~~V~~v~~spdg~~l~sgs 146 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDENETLIV---------------SKFCKYEH-DDIVSTVSVLSSGTQAVSGS 146 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEE---------------EEEEEECC-SSCEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeE---------------eeccccCC-CCCEEEEEECCCCCEEEEEe
Confidence 35777877654 5555 5699999999976543211 01112234 78999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
.||+||+||+.++ +.+.++.+|.+.|++++|++++. |+|||.|++||+||+.+++....+...
T Consensus 147 ~d~~i~iwd~~~~--------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~------- 211 (344)
T 4gqb_B 147 KDICIKVWDLAQQ--------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS------- 211 (344)
T ss_dssp TTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---------
T ss_pred CCCeEEEEECCCC--------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc-------
Confidence 9999999999997 77889999999999999999985 689999999999999875533222110
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCC-CCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
.....+.++++.+. +..+++++ +++|+|||+++++++.++.+
T Consensus 212 --------------------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~---------------- 255 (344)
T 4gqb_B 212 --------------------APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV---------------- 255 (344)
T ss_dssp ----------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC----------------
T ss_pred --------------------eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC----------------
Confidence 00224566777764 44666665 67999999998876554432
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEeCCCeEEE
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQ 444 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs~DgtIrl 444 (842)
|...|.+++|+|+|. |++|+.|++|++
T Consensus 256 ---------------------------------------------------h~~~v~~v~fsp~g~~~lasgs~D~~i~v 284 (344)
T 4gqb_B 256 ---------------------------------------------------HSQCVTGLVFSPHSVPFLASLSEDCSLAV 284 (344)
T ss_dssp ---------------------------------------------------CSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred ---------------------------------------------------CCCCEEEEEEccCCCeEEEEEeCCCeEEE
Confidence 334466788999873 789999999999
Q ss_pred EcCCCCeeeeeecCCccEEEEEe--cCC-EEEEEecCcEEEEEeCCCc
Q 003171 445 WDPNGNRLQDFQYLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLEGN 489 (842)
Q Consensus 445 WD~~g~~l~~l~~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~g~ 489 (842)
||+....+..+.+|.+.|+++++ +|+ .|++|+.|++|++|++..+
T Consensus 285 wd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 285 LDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 99954344567899999999975 665 6789999999999998743
No 33
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=5.7e-29 Score=268.19 Aligned_cols=237 Identities=12% Similarity=0.055 Sum_probs=178.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvW 267 (842)
..+|.+++|+|+|++|+||+.|++||+|++.++. .+.+.++.||.++|++|+|+++ |+ |+|||.|++||||
T Consensus 9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 7799999999999999999999999999997531 1456789999999999999864 66 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC--CCEEEEeC-CCcEEEEEccCCcE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
|+.++.... .. .+.+| ...+.++++.++ +..+++++ +++|++||++++..
T Consensus 83 d~~~~~~~~--------~~---------~~~~h----------~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~ 135 (297)
T 2pm7_B 83 KEENGRWSQ--------IA---------VHAVH----------SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT 135 (297)
T ss_dssp EBSSSCBCC--------CE---------EECCC----------SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC
T ss_pred EcCCCceEE--------EE---------EeecC----------CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc
Confidence 997642110 00 01111 346788888775 66777776 67999999987531
Q ss_pred --EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCce
Q 003171 345 --LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (842)
Q Consensus 345 --l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (842)
...+..|. ..|
T Consensus 136 ~~~~~~~~h~-------------------------------------------------------------------~~v 148 (297)
T 2pm7_B 136 TSPIIIDAHA-------------------------------------------------------------------IGV 148 (297)
T ss_dssp BCCEEEECCS-------------------------------------------------------------------SCE
T ss_pred eeeeeeeccc-------------------------------------------------------------------Ccc
Confidence 12222222 122
Q ss_pred EEEEECCC-------------C-cEEEEeCCCeEEEEcC-CCC----eeeeeecCCccEEEEEe--c---CCEEEEEecC
Q 003171 423 EALTTSID-------------G-MIWTGGANGLLLQWDP-NGN----RLQDFQYLPFAVQCLCT--F---GSQIWVGYMN 478 (842)
Q Consensus 423 ~al~~s~d-------------g-~l~Sgs~DgtIrlWD~-~g~----~l~~l~~H~~~V~sls~--d---G~~LasGs~D 478 (842)
.+++++|+ + .|++|+.|++|++||+ +++ ++.++.+|..+|+++++ + +.+|++|+.|
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 22333332 3 4899999999999999 555 66788999999999975 4 3699999999
Q ss_pred cEEEEEeCCC-c--c-cccc--cccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 479 GIVQVLDLEG-N--L-LGGW--VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 479 gtIrlWD~~g-~--~-i~~l--~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
++|+|||++. . . ...+ .+|.+.|+++++ ++++|++++.|++|++|+...
T Consensus 229 ~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 9999999863 1 1 1233 578999999984 788999999999999999754
No 34
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=5.4e-29 Score=282.73 Aligned_cols=270 Identities=19% Similarity=0.281 Sum_probs=209.5
Q ss_pred ceeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 133 CFLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 133 ~~~~~l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
..+.++..+++.+.+ +.|+.|++||+.+..... ....| .++|.|+++ ++++|++|+.
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h-~~~v~~l~~--~~~~l~sg~~ 191 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR-------------------ILTGH-TGSVLCLQY--DERVIITGSS 191 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEE-------------------EECCC-SSCEEEEEC--CSSEEEEEET
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEE-------------------EEcCC-CCcEEEEEE--CCCEEEEEcC
Confidence 346677777777776 569999999997644321 11123 779999998 6799999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEe
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~ 291 (842)
||+|++||+.++ +....+.+|.+.|.+++|++ +.|++|+.||+|++||+.+....... .
T Consensus 192 dg~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~-------~----- 250 (435)
T 1p22_A 192 DSTVRVWDVNTG--------EMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLR-------R----- 250 (435)
T ss_dssp TSCEEEEESSSC--------CEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEE-------E-----
T ss_pred CCeEEEEECCCC--------cEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceee-------e-----
Confidence 999999999987 67888999999999999975 46899999999999999764321000 0
Q ss_pred eceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccccc
Q 003171 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (842)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (842)
.+.+| ...+.++.. ++..+++++ +++|++||+.+++++.++..|..
T Consensus 251 ----~~~~~----------~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------------- 297 (435)
T 1p22_A 251 ----VLVGH----------RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR----------------- 297 (435)
T ss_dssp ----EECCC----------SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS-----------------
T ss_pred ----EecCC----------CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC-----------------
Confidence 01111 345666666 455666665 68999999999988766643321
Q ss_pred ceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CC
Q 003171 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NG 449 (842)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g 449 (842)
.+.++.++ +..+++|+.||+|++||+ ++
T Consensus 298 --------------------------------------------------~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 298 --------------------------------------------------GIACLQYR-DRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp --------------------------------------------------CEEEEEEE-TTEEEEEETTSCEEEEETTTC
T ss_pred --------------------------------------------------cEEEEEeC-CCEEEEEeCCCeEEEEECCCC
Confidence 12233342 345899999999999999 79
Q ss_pred CeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-Cc---------ccccccccccCEEEEEeCCCEEEEEcCCCC
Q 003171 450 NRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GN---------LLGGWVAHSSPVIKMAVGAGYIFTLANHGG 519 (842)
Q Consensus 450 ~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~---------~i~~l~gH~~~V~sla~dg~~l~S~S~Dgt 519 (842)
+++.++.+|...|.+++++|.+|++|+.||+|++||+. ++ ++..+.+|.+.|.+++++++++++++.||+
T Consensus 327 ~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDT 406 (435)
T ss_dssp CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSE
T ss_pred CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCE
Confidence 99999999999999999999999999999999999975 33 688899999999999999999999999999
Q ss_pred eeeccccCCC
Q 003171 520 IRGWNVTSPG 529 (842)
Q Consensus 520 IrvWd~~~~~ 529 (842)
|++||+....
T Consensus 407 i~iwd~~~~~ 416 (435)
T 1p22_A 407 ILIWDFLNDP 416 (435)
T ss_dssp EEEEC-----
T ss_pred EEEEECCCCC
Confidence 9999987643
No 35
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.6e-29 Score=275.77 Aligned_cols=282 Identities=13% Similarity=0.107 Sum_probs=209.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|++|+|++++|++|+.||+|++|+... .....+.+|..+|++++|+|+++ |++++.|++|++||+
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTG---------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV 178 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEETTS---------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEEC
Confidence 56899999999999999999999999999443 56788999999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEee
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~ 349 (842)
.++.....+.......... ....+ ......+.++...+++..+..+.++.|++||+.+++++..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 244 (425)
T 1r5m_A 179 ISGTVMQHFELKETGGSSI-------NAENH-------SGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLI 244 (425)
T ss_dssp TTTEEEEEECCC-----------------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEEC
T ss_pred CCCcEEEEeeccccCccce-------eeccc-------cCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeec
Confidence 7754333222111100000 00000 000011444555555444434446789999999988877765
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCceE
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTE 423 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~ 423 (842)
.+...... +.+.+++...+++..++..+++. .+ .+..+...+.
T Consensus 245 ~~~~~i~~-------------------------------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 293 (425)
T 1r5m_A 245 GHHGPISV-------------------------------LEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIV 293 (425)
T ss_dssp CCSSCEEE-------------------------------EEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEE
T ss_pred cCCCceEE-------------------------------EEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEE
Confidence 54433222 33444444455666666555553 11 2345778899
Q ss_pred EEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cc----------
Q 003171 424 ALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GN---------- 489 (842)
Q Consensus 424 al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~---------- 489 (842)
+++++|++.+++++.|+.|++||+ +++++..+..|...|.++++ +|++|++|+.||.|++||+. ++
T Consensus 294 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 373 (425)
T 1r5m_A 294 SASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNR 373 (425)
T ss_dssp EEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---------
T ss_pred EEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccc
Confidence 999999998899999999999999 78999999999999999865 68999999999999999987 56
Q ss_pred ----------cccccccccc--CEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 490 ----------LLGGWVAHSS--PVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 490 ----------~i~~l~gH~~--~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
++..+.+|.. .|.++++ ++++|++++.|++|++|++.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 374 DGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -----CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 7889999977 9999985 78899999999999999974
No 36
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=7.2e-28 Score=282.86 Aligned_cols=333 Identities=10% Similarity=0.093 Sum_probs=228.5
Q ss_pred eeEEEEecCC---EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCC---CeEEEEEcCC-CCE
Q 003171 134 FLRTIVCTEE---QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVS---SVMCMVGDEA-SGV 205 (842)
Q Consensus 134 ~~~~l~~~~~---~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~V~~la~dpd-g~~ 205 (842)
.+.+++...+ .+.+ +.|+.|++||+.+...... + ..+ .. +|.|++|+|+ +++
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~-----------------~--~~~-~~~~~~v~~~~~~~~~~~~ 221 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS-----------------D--RTH-HKQGSFVRDVEFSPDSGEF 221 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE-----------------E--CSS-SCTTCCEEEEEECSTTCCE
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee-----------------e--ccc-CCCCceEEEEEECCCCCCE
Confidence 3555555533 3444 5689999999876433211 1 112 55 8999999999 999
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcceeEEe-c---ccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCC
Q 003171 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-Q---AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (842)
Q Consensus 206 LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l-~---gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~ 280 (842)
|++|+.||+|++||+.++ +.+..+ . +|.++|++++|+ +++ |++++.|++|++||+.+++....+..
T Consensus 222 l~~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 222 VITVGSDRKISCFDGKSG--------EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp EEEEETTCCEEEEETTTC--------CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeCCCeEEEEECCCC--------CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 999999999999999987 667777 6 999999999999 887 78999999999999976543222211
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeee
Q 003171 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (842)
Q Consensus 281 ~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (842)
... . ....+..+... ++..+++++ ++.|++||+.+++++..+..|...+..+.
T Consensus 293 ~~~------------------~-------~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~ 346 (615)
T 1pgu_A 293 DKQ------------------Q-------LGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALT 346 (615)
T ss_dssp CTT------------------C-------GGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred CCC------------------c-------ccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEE
Confidence 100 0 01233344444 455666655 67899999999998888877766555554
Q ss_pred cccCCCccc--c----------------------------------cceEEEEEecCCC---------------------
Q 003171 360 MSLLPDFAM--E----------------------------------DEFKTKIVTSSKK--------------------- 382 (842)
Q Consensus 360 ~s~~~~~~~--~----------------------------------~~~~~~~~s~~~~--------------------- 382 (842)
+ +. .... + .+..+++|.....
T Consensus 347 ~-~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 424 (615)
T 1pgu_A 347 V-NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLT 424 (615)
T ss_dssp T-TT-TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEE
T ss_pred e-cC-cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEe
Confidence 4 22 0000 0 0011111111000
Q ss_pred ---------------------CccceeeeEeecCcceEEecC-CcEEEEee--c-----CccccCCCceEEEEECCCCc-
Q 003171 383 ---------------------DKAQSSFGFFQRSRNAIMGAA-DAVRRVAA--K-----GGFGDDNRRTEALTTSIDGM- 432 (842)
Q Consensus 383 ---------------------~~~~~s~~~~~~~~~~~~g~~-~~v~~v~~--~-----g~~~~~~~~v~al~~s~dg~- 432 (842)
......+.+. +...+++.. ++..+++. . ..+..|...|.+++++|+|.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 502 (615)
T 1pgu_A 425 NDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY 502 (615)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE
T ss_pred CCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCE
Confidence 0000011111 233444555 55555543 1 23445777889999999987
Q ss_pred EEEEeCCCeEEEEcC-CCCeeeeeec-CCccEEEEEe------------cCCEEEEEecCcEEEEEeCC-C-cccccccc
Q 003171 433 IWTGGANGLLLQWDP-NGNRLQDFQY-LPFAVQCLCT------------FGSQIWVGYMNGIVQVLDLE-G-NLLGGWVA 496 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~-~g~~l~~l~~-H~~~V~sls~------------dG~~LasGs~DgtIrlWD~~-g-~~i~~l~g 496 (842)
|++|+.||.|++||+ +++++.++.+ |...|+++++ +|++|++|+.||+|+|||++ + +++..+.+
T Consensus 503 l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 582 (615)
T 1pgu_A 503 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA 582 (615)
T ss_dssp EEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS
T ss_pred EEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhc
Confidence 788889999999999 7888888887 9999998864 78899999999999999987 4 67888999
Q ss_pred cccCEEEEE--eCCCEEEEEcCCCCeeecccc
Q 003171 497 HSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 497 H~~~V~sla--~dg~~l~S~S~DgtIrvWd~~ 526 (842)
|.+.|++++ ++++ |++++.|++|++|++.
T Consensus 583 h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 583 HKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp STTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred CccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 999999887 4777 9999999999999875
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=3.2e-27 Score=254.85 Aligned_cols=273 Identities=14% Similarity=0.188 Sum_probs=209.3
Q ss_pred eeEEEEec--CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 134 FLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
.+.+++.. +..|.++.|+.|++||+.+...... ...+....+ ..+|.+++++|++++|++|+.
T Consensus 53 ~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~--------------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~ 117 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP--------------VSQLDCLNR-DNYIRSCKLLPDGCTLIVGGE 117 (337)
T ss_dssp CCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSC--------------SEEEECSCT-TSBEEEEEECTTSSEEEEEES
T ss_pred ceEEEEEecCCcEEEEcCCCeEEEEECCCCCceee--------------eecccccCC-CCcEEEEEEcCCCCEEEEEcC
Confidence 45556654 4466667799999999976432211 011111122 678999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
||+|++||+.++. ......+.+|...|++++|+|+++ |++|+.|+.|++||+.+.+....+.
T Consensus 118 d~~i~~~d~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~----------- 180 (337)
T 1gxr_A 118 ASTLSIWDLAAPT------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ----------- 180 (337)
T ss_dssp SSEEEEEECCCC--------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----------
T ss_pred CCcEEEEECCCCC------cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee-----------
Confidence 9999999998862 124567889999999999999997 7899999999999997643222111
Q ss_pred eeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccc
Q 003171 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (842)
+| ...+..++.++++..+++++ ++.|++||+++++.+..+..
T Consensus 181 --------~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~------------------- 223 (337)
T 1gxr_A 181 --------GH----------TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF------------------- 223 (337)
T ss_dssp --------CC----------SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-------------------
T ss_pred --------cc----------cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC-------------------
Confidence 11 34577888888888888876 67899999998876544321
Q ss_pred cceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCC
Q 003171 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN 448 (842)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~ 448 (842)
...+.+++++|++. +++++.|+.|++||+.
T Consensus 224 -------------------------------------------------~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 224 -------------------------------------------------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp -------------------------------------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred -------------------------------------------------CCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 12245677888887 7899999999999996
Q ss_pred CCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeec
Q 003171 449 GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGW 523 (842)
Q Consensus 449 g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvW 523 (842)
......+..|...|.++++ +|++|++++.||.|++||++ ++.+ ....|...|.++++ +++++++++.|+.|++|
T Consensus 255 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 255 KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp SSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE-EEecCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 5455677889999999865 68999999999999999987 5554 34568999999874 78899999999999999
Q ss_pred cc
Q 003171 524 NV 525 (842)
Q Consensus 524 d~ 525 (842)
++
T Consensus 334 ~~ 335 (337)
T 1gxr_A 334 EV 335 (337)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 38
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=4.2e-28 Score=260.33 Aligned_cols=276 Identities=15% Similarity=0.136 Sum_probs=199.7
Q ss_pred eEEEEecCC-EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 003171 135 LRTIVCTEE-QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (842)
Q Consensus 135 ~~~l~~~~~-~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG 213 (842)
+..|+-..+ .|.+|.|++|||||++++..... +....| ...|.|++++|++++|+||+.||
T Consensus 28 ~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~-----------------~~~~~~-~~~V~~v~~~~~~~~l~sgs~Dg 89 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVALDNSVYLWSASSGDILQL-----------------LQMEQP-GEYISSVAWIKEGNYLAVGTSSA 89 (318)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEE-----------------EECCST-TCCEEEEEECTTSSEEEEEETTS
T ss_pred ceEEEECCCCEEEEEeCCEEEEEECCCCCEEEE-----------------EEecCC-CCeEEEEEECCCCCEEEEEECCC
Confidence 444554444 45558899999999987543211 222222 67899999999999999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEee
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~ 292 (842)
+|++|++.++ +.+..+.+|...+.++.+. +. |++|+.++.+++|+..+....+..
T Consensus 90 ~v~iw~~~~~--------~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~-------------- 145 (318)
T 4ggc_A 90 EVQLWDVQQQ--------KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT-------------- 145 (318)
T ss_dssp EEEEEETTTT--------EEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE--------------
T ss_pred cEEEeecCCc--------eeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEE--------------
Confidence 9999999997 7788899999999877665 45 789999999999998664322110
Q ss_pred ceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccc
Q 003171 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDE 371 (842)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~ 371 (842)
+.+| ...+..+...+.+..+++++ +++|++||+++++...... .
T Consensus 146 ----~~~~----------~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~----------------- 190 (318)
T 4ggc_A 146 ----LSGH----------SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----Q----------------- 190 (318)
T ss_dssp ----EECC----------SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----E-----------------
T ss_pred ----EcCc----------cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----e-----------------
Confidence 0111 34566777777888888776 6799999998765310000 0
Q ss_pred eEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc----EEEEeCCCeEEEEcC
Q 003171 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM----IWTGGANGLLLQWDP 447 (842)
Q Consensus 372 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~----l~Sgs~DgtIrlWD~ 447 (842)
. ...+...|.++++++++. +++++.+++|++||.
T Consensus 191 ------~------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~ 228 (318)
T 4ggc_A 191 ------T------------------------------------FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228 (318)
T ss_dssp ------E------------------------------------ECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET
T ss_pred ------e------------------------------------ecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec
Confidence 0 011223344555655543 246778899999999
Q ss_pred C-CCeeeeeecCCccEEEEE--ecCCEEEEEe--cCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCC
Q 003171 448 N-GNRLQDFQYLPFAVQCLC--TFGSQIWVGY--MNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGG 519 (842)
Q Consensus 448 ~-g~~l~~l~~H~~~V~sls--~dG~~LasGs--~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~Dgt 519 (842)
. +..... ..|...|.++. ++++.+++++ .|++|+|||+. ++++.++.+|.+.|++|++ |+++|+|+|.|++
T Consensus 229 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~ 307 (318)
T 4ggc_A 229 CSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 307 (318)
T ss_dssp TTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred cccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence 5 444444 45667777664 4677766554 79999999987 7899999999999999985 7889999999999
Q ss_pred eeeccccCCCC
Q 003171 520 IRGWNVTSPGP 530 (842)
Q Consensus 520 IrvWd~~~~~~ 530 (842)
||+||+...+|
T Consensus 308 v~iWd~~~~dP 318 (318)
T 4ggc_A 308 LRLWRCFELDP 318 (318)
T ss_dssp EEEECCSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999876554
No 39
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=5.1e-28 Score=291.66 Aligned_cols=277 Identities=18% Similarity=0.264 Sum_probs=201.9
Q ss_pred ceeEEEEec--C-CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE
Q 003171 133 CFLRTIVCT--E-EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 133 ~~~~~l~~~--~-~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS 208 (842)
..+++|+.. + +.|.+ +.|++||+||+.+...... ........| ...|.|++++|++++|+|
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h-~~~v~~v~~s~~g~~l~s 447 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGH-SHFVEDVVLSSDGQFALS 447 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECC-SSCEEEEEECTTSSEEEE
T ss_pred ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCC-CCcEEEEEECCCCCEEEE
Confidence 356677764 2 24444 5699999999965321100 000111233 789999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeE
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
|+.||+||+||+.++ .....+.+|.+.|++++|+|+|+ |+|||.|++|||||...... ......
T Consensus 448 gs~Dg~v~vwd~~~~--------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~------ 512 (694)
T 3dm0_A 448 GSWDGELRLWDLAAG--------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEG------ 512 (694)
T ss_dssp EETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSS------
T ss_pred EeCCCcEEEEECCCC--------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccC------
Confidence 999999999999987 67788999999999999999997 89999999999999754211 111000
Q ss_pred EEEeeceeecccceeccceeeeecCCEEEEEEcCCC--CEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCC
Q 003171 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR--AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~--~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (842)
..+| ...+.++++++++ ..+++++ +++|++||+.+++++.++.
T Consensus 513 ---------~~~h----------~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~--------------- 558 (694)
T 3dm0_A 513 ---------GEGH----------RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA--------------- 558 (694)
T ss_dssp ---------TTSC----------SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC---------------
T ss_pred ---------CCCC----------CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc---------------
Confidence 0011 3457788887765 3566666 6899999998877654432
Q ss_pred CcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEE
Q 003171 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (842)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIr 443 (842)
.|...|.+++++|+|. |++|+.||+|+
T Consensus 559 ----------------------------------------------------~h~~~v~~v~~spdg~~l~sg~~Dg~i~ 586 (694)
T 3dm0_A 559 ----------------------------------------------------GHTGYVSTVAVSPDGSLCASGGKDGVVL 586 (694)
T ss_dssp ----------------------------------------------------CCSSCEEEEEECTTSSEEEEEETTSBCE
T ss_pred ----------------------------------------------------CCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 2334567788999987 78999999999
Q ss_pred EEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Ccccccccccc-------------------cC
Q 003171 444 QWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS-------------------SP 500 (842)
Q Consensus 444 lWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~-------------------~~ 500 (842)
+||+ +++++..+.. ...|.++++ ++.+|+++ .++.|+|||++ ++++..+..|. -.
T Consensus 587 iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (694)
T 3dm0_A 587 LWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664 (694)
T ss_dssp EEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCC
T ss_pred EEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEE
Confidence 9999 7888888765 457888765 56666665 56779999997 55555554322 23
Q ss_pred EEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 501 VIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 501 V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
|++++ +||++|+|||.||+||+|++..
T Consensus 665 ~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 665 CTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred eeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 67776 5899999999999999999754
No 40
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=6.7e-29 Score=276.47 Aligned_cols=284 Identities=8% Similarity=0.070 Sum_probs=202.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCccCCCCCc--ceeEEecccCCcEEEEEEecCC--------
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDG-------RIMCWKMNARLLDSDDGF--GEVLSWQAHRGPVLSLCISSYG-------- 253 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DG-------tIrlWdl~~g~~~~~~~~--~~~~~l~gH~~~V~slafs~dG-------- 253 (842)
.-||+|++|+|||++|++|+.|. +|++|++..+.......+ .....|.+|...|.+++++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 45999999999999999998654 599999876520000000 1123577899999999887541
Q ss_pred --CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEE--e
Q 003171 254 --DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS--A 329 (842)
Q Consensus 254 --~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s--~ 329 (842)
.|++|+.|+++|+|++.+....+... ... ..... ..+...++++++++++..++. +
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~------~~~----~~~~~----------~~~~~~~~~v~fSpDg~~la~as~ 153 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFL------TSV----DFDAS----------TNADDYTKLVYISREGTVAAIASS 153 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEE------EEE----CSSCC----------CCTTCCEEEEEECTTSSCEEEEES
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEe------eee----ceeec----------CCcccCEEEEEEcCCCCEEEEEEC
Confidence 14567789999999986543222110 000 00000 001235788999999987654 3
Q ss_pred C-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEE
Q 003171 330 G-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (842)
Q Consensus 330 s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~ 408 (842)
+ |++|+|||+.+++++..+..+..+ . .+.|.+++..+..+..+++..
T Consensus 154 ~~d~~i~iwd~~~~~~~~~~~~~~~V-~-------------------------------~v~fspdg~~l~s~s~~~~~~ 201 (365)
T 4h5i_A 154 KVPAIMRIIDPSDLTEKFEIETRGEV-K-------------------------------DLHFSTDGKVVAYITGSSLEV 201 (365)
T ss_dssp CSSCEEEEEETTTTEEEEEEECSSCC-C-------------------------------EEEECTTSSEEEEECSSCEEE
T ss_pred CCCCEEEEeECCCCcEEEEeCCCCce-E-------------------------------EEEEccCCceEEeccceeEEE
Confidence 3 578999999999998877543322 2 234555555555666666666
Q ss_pred Eee-cC------ccccCCCceEEEEECCCCc-EEEEeCCC----eEEEEcC-CCC----eeeeeecCCccEEEEE--ecC
Q 003171 409 VAA-KG------GFGDDNRRTEALTTSIDGM-IWTGGANG----LLLQWDP-NGN----RLQDFQYLPFAVQCLC--TFG 469 (842)
Q Consensus 409 v~~-~g------~~~~~~~~v~al~~s~dg~-l~Sgs~Dg----tIrlWD~-~g~----~l~~l~~H~~~V~sls--~dG 469 (842)
++. .+ ....|...+.+++|+|||. +++++.|+ ++++||+ .+. ..+.+.+|..+|++++ +||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg 281 (365)
T 4h5i_A 202 ISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG 281 (365)
T ss_dssp EETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS
T ss_pred EEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC
Confidence 654 12 2334667889999999998 78888887 6899998 443 2456778999999886 589
Q ss_pred CEEEEEecCcEEEEEeCC-Cccccc-ccccccCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 470 SQIWVGYMNGIVQVLDLE-GNLLGG-WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 470 ~~LasGs~DgtIrlWD~~-g~~i~~-l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
++||+|+.|++|+|||++ ++++.+ +.+|.+.|++|++ ||++|+|+|.|++||||++.
T Consensus 282 ~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 282 ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 999999999999999997 788876 5899999999984 89999999999999999984
No 41
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=3.5e-27 Score=268.09 Aligned_cols=297 Identities=17% Similarity=0.249 Sum_probs=224.7
Q ss_pred eEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 003171 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (842)
Q Consensus 135 ~~~l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG 213 (842)
+.++..+++.|++ +.|++|++||+.+...... + ..| .++|.|++++ +++|++|+.||
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~-----------------~--~~h-~~~v~~~~~~--~~~l~s~~~dg 179 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT-----------------L--VGH-TGGVWSSQMR--DNIIISGSTDR 179 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEEEE-----------------C--CCC-SSCEEEEEEE--TTEEEEEETTS
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEEEE-----------------E--cCC-CCCEEEEEec--CCEEEEEeCCC
Confidence 4566777887776 5699999999976543211 1 123 7799999998 57999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
+|++||+.++ +....+.+|...|.+++|++ ..|++|+.||+|++||+.+++....+.
T Consensus 180 ~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~-------------- 236 (445)
T 2ovr_B 180 TLKVWNAETG--------ECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLM-------------- 236 (445)
T ss_dssp CEEEEETTTT--------EEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEE--------------
T ss_pred eEEEEECCcC--------cEEEEECCCCCcEEEEEecC-CEEEEEeCCCEEEEEECCCCcEEEEEc--------------
Confidence 9999999987 67888999999999999964 348999999999999997654322111
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccce
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
+| ...+.++.. ++..+++++ +++|++||+.+++++..+..|......+.+
T Consensus 237 -----~~----------~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~------------ 287 (445)
T 2ovr_B 237 -----GH----------VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF------------ 287 (445)
T ss_dssp -----CC----------SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE------------
T ss_pred -----CC----------cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE------------
Confidence 11 345666666 345566655 689999999999998888766543322222
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCceEEEEECCCCcEEEEeCCCeEEEEc
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWD 446 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD 446 (842)
++...+++..++..+++. .+ .+..|...+.++.++ +..+++|+.||+|++||
T Consensus 288 ---------------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 288 ---------------------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWD 345 (445)
T ss_dssp ---------------------CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE-TTEEEEEETTSCEEEEE
T ss_pred ---------------------CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe-CCEEEEEeCCCeEEEEE
Confidence 122334455555444443 11 234566677777764 34689999999999999
Q ss_pred C-CCCeeeeeec---CCccEEEEEecCCEEEEEecCcEEEEEeCC-Ccccccc-----cccccCEEEEEe--CCCEEEEE
Q 003171 447 P-NGNRLQDFQY---LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW-----VAHSSPVIKMAV--GAGYIFTL 514 (842)
Q Consensus 447 ~-~g~~l~~l~~---H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l-----~gH~~~V~sla~--dg~~l~S~ 514 (842)
+ +++++.++.+ |...|+++++++++|++|+.||+|++||+. ++++..+ .+|.+.|+++++ ++..++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~ 425 (445)
T 2ovr_B 346 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 425 (445)
T ss_dssp TTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred CCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEc
Confidence 9 7899999886 889999999999999999999999999987 7777766 588999999985 56678999
Q ss_pred cCCCC----eeeccccC
Q 003171 515 ANHGG----IRGWNVTS 527 (842)
Q Consensus 515 S~Dgt----IrvWd~~~ 527 (842)
+.||+ |.+||+..
T Consensus 426 ~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 426 SRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CSSSSSCCEEEEEECCC
T ss_pred ccCCCCccEEEEEECCC
Confidence 99998 99999764
No 42
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=3.7e-28 Score=274.70 Aligned_cols=279 Identities=15% Similarity=0.165 Sum_probs=206.3
Q ss_pred eEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 003171 135 LRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (842)
Q Consensus 135 ~~~l~~~-~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG 213 (842)
+..|+-. .+.|.+|.|++|+|||..++..... +....+ ...|.||+|+|+|++|++|+.||
T Consensus 108 ~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~-----------------~~~~~~-~~~V~sv~fspdg~~lasgs~Dg 169 (420)
T 4gga_A 108 LNLVDWSSGNVLAVALDNSVYLWSASSGDILQL-----------------LQMEQP-GEYISSVAWIKEGNYLAVGTSSA 169 (420)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEE-----------------EECCST-TCCEEEEEECTTSSEEEEEETTS
T ss_pred ceeEEECCCCEEEEEeCCEEEEEECCCCCEEEE-----------------EEecCC-CCcEEEEEECCCCCEEEEEECCC
Confidence 3334433 3455568899999999987543211 111122 66899999999999999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
+|++||+.++ +.+..+.+|...|.++++++ ..|++|+.|+++++||.......+. .
T Consensus 170 ~v~iWd~~~~--------~~~~~~~~h~~~v~~~s~~~-~~l~sgs~d~~i~~~d~~~~~~~~~---------~------ 225 (420)
T 4gga_A 170 EVQLWDVQQQ--------KRLRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVA---------T------ 225 (420)
T ss_dssp CEEEEETTTT--------EEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEE---------E------
T ss_pred eEEEEEcCCC--------cEEEEEeCCCCceEEEeeCC-CEEEEEeCCCceeEeeecccceeeE---------E------
Confidence 9999999997 77888999999999988754 2378999999999999865322111 0
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccce
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
+.+| ...+..+...+.+..+++++ |+.+++||..+++.... ..
T Consensus 226 ---~~~h----------~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-----~~------------------ 269 (420)
T 4gga_A 226 ---LSGH----------SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-----PL------------------ 269 (420)
T ss_dssp ---EECC----------SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-----CS------------------
T ss_pred ---eccc----------ccceeeeeecCCCCeeeeeeccccceEEeeccccccce-----ee------------------
Confidence 1112 34566777788888888776 67899999987542000 00
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEE--EeCCCeEEEEcC-
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWT--GGANGLLLQWDP- 447 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~S--gs~DgtIrlWD~- 447 (842)
. .+..+...|.+++++|++. +++ |+.|++|++||+
T Consensus 270 ~----------------------------------------~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~ 309 (420)
T 4gga_A 270 Q----------------------------------------TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 309 (420)
T ss_dssp E----------------------------------------EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred e----------------------------------------eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence 0 0123445567788888654 444 457999999999
Q ss_pred CCCeeeeeecCCccEEEE--EecCCEEEEEe--cCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCe
Q 003171 448 NGNRLQDFQYLPFAVQCL--CTFGSQIWVGY--MNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGI 520 (842)
Q Consensus 448 ~g~~l~~l~~H~~~V~sl--s~dG~~LasGs--~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtI 520 (842)
+++++..+..|. .|.++ .++++.|++++ .|++|+|||+. ++++.++.||.+.|++|++ ||++|+|||.|++|
T Consensus 310 t~~~~~~~~~~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tv 388 (420)
T 4gga_A 310 SGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 388 (420)
T ss_dssp TTEEEEEEECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred ccccceeecccc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeE
Confidence 788888887665 45555 45788877765 79999999987 7899999999999999984 88999999999999
Q ss_pred eeccccCCCCCc
Q 003171 521 RGWNVTSPGPLD 532 (842)
Q Consensus 521 rvWd~~~~~~~d 532 (842)
|+||+....|..
T Consensus 389 riWdv~~~~~~~ 400 (420)
T 4gga_A 389 RLWRCFELDPAR 400 (420)
T ss_dssp EEECCSCSSCC-
T ss_pred EEEECCCCCccc
Confidence 999987766544
No 43
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=7e-29 Score=270.10 Aligned_cols=252 Identities=13% Similarity=0.060 Sum_probs=177.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvW 267 (842)
..+|.|++|+|+|++|+||+.|++||+||+.++. ...+..+.||.++|++|+|+++ |+ |+|||.|++|++|
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~------~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG------QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE------EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC------cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 7899999999999999999999999999998752 0245678999999999999863 65 8999999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC--CCEEEEeC-CCcEEEEEccCCcE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
|+.++..... . .+.+| ...+.+++++++ +..+++++ |++|++||+.++..
T Consensus 87 d~~~~~~~~~--------~---------~~~~h----------~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~ 139 (316)
T 3bg1_A 87 REENGTWEKS--------H---------EHAGH----------DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ 139 (316)
T ss_dssp CCSSSCCCEE--------E---------EECCC----------SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC
T ss_pred ECCCCcceEE--------E---------EccCC----------CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC
Confidence 9976421100 0 01112 345777888775 56777777 67999999987632
Q ss_pred EE---EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCc-ceEEecCCcEEEEeecCccccCCC
Q 003171 345 LK---VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAAKGGFGDDNR 420 (842)
Q Consensus 345 l~---~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~~g~~~~~~~ 420 (842)
.. .+..|..... .+.|.+... ..+..+. .+.
T Consensus 140 ~~~~~~~~~h~~~v~-------------------------------~~~~~~~~~~~~~~~~~--------~~~------ 174 (316)
T 3bg1_A 140 WEVKKINNAHTIGCN-------------------------------AVSWAPAVVPGSLIDHP--------SGQ------ 174 (316)
T ss_dssp EEECCBTTSSSSCBC-------------------------------CCEECCCCCC------C--------CSC------
T ss_pred cceeeeeccccCCcc-------------------------------eEEEccccCCccccccc--------ccc------
Confidence 11 1111111100 111111100 0000000 000
Q ss_pred ceEEEEECCCC-cEEEEeCCCeEEEEcCC-C---CeeeeeecCCccEEEEEe--cC----CEEEEEecCcEEEEEeCCC-
Q 003171 421 RTEALTTSIDG-MIWTGGANGLLLQWDPN-G---NRLQDFQYLPFAVQCLCT--FG----SQIWVGYMNGIVQVLDLEG- 488 (842)
Q Consensus 421 ~v~al~~s~dg-~l~Sgs~DgtIrlWD~~-g---~~l~~l~~H~~~V~sls~--dG----~~LasGs~DgtIrlWD~~g- 488 (842)
...++ .|++|+.|++|++||+. + +++.++.+|..+|+++++ ++ ++|++|+.|++|+|||++.
T Consensus 175 ------~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~ 248 (316)
T 3bg1_A 175 ------KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDA 248 (316)
T ss_dssp ------CCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSST
T ss_pred ------CccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCc
Confidence 01123 58999999999999994 4 467889999999999975 44 7899999999999999863
Q ss_pred ---c-ccccccccccCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 489 ---N-LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 489 ---~-~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
+ ....+.+|.+.|+++++ ++++|++++.|++|++|+..
T Consensus 249 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 249 SSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 1 23456789999999985 78899999999999999964
No 44
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=4.3e-28 Score=268.99 Aligned_cols=280 Identities=11% Similarity=0.065 Sum_probs=193.3
Q ss_pred CCCCcccccccCCCccc--ccccccccCCCCCCCceeecCCCCCccccCceeEEEEecCC-EEEE-ecCCCEEEEeCCCC
Q 003171 86 SSSSLPEYIGKGGDIPM--FKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEE-QLWA-GGENGLRVWNLKEL 161 (842)
Q Consensus 86 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~-~~D~~vrvWdl~~~ 161 (842)
.++|-+++|..|+...+ +...++.+-.+...+..++... .. +....+.+++...+ .+++ +.|++|+|||+.+.
T Consensus 49 ~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-~~--~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~ 125 (357)
T 4g56_B 49 RYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-GV--QTEAGVTDVAWVSEKGILVASDSGAVELWEILEK 125 (357)
T ss_dssp EECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-EE--ECSSCEEEEEEETTTEEEEEETTSCEEEC-----
T ss_pred EECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-cC--CCCCCEEEEEEcCCCCEEEEECCCEEEEeecccc
Confidence 46888999988776432 2334444433322221111111 11 11224667776544 4444 77999999999765
Q ss_pred ccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccC
Q 003171 162 YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR 241 (842)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~ 241 (842)
.... ...+....| .++|.||+|+|++++|+||+.||+|++||+.++ +.+..+++|.
T Consensus 126 ~~~~---------------~~~~~~~~h-~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~--------~~~~~~~~h~ 181 (357)
T 4g56_B 126 ESLL---------------VNKFAKYEH-DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK--------AVLKSYNAHS 181 (357)
T ss_dssp ---C---------------CCCEEECCC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTT--------EEEEEECCCS
T ss_pred ceeE---------------EEeeccCCC-CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------cEEEEEcCCC
Confidence 4321 112222234 789999999999999999999999999999987 6788899999
Q ss_pred CcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEE
Q 003171 242 GPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (842)
Q Consensus 242 ~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las 319 (842)
+.|++|+|++++. +++++.|++|++||+.+++........ .+ ...+.++++
T Consensus 182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~-----------------~~----------~~~v~~v~~ 234 (357)
T 4g56_B 182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC-----------------AS----------DTIPTSVTW 234 (357)
T ss_dssp SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT-----------------TC----------CSCEEEEEE
T ss_pred CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec-----------------cc----------cccccchhh
Confidence 9999999999875 789999999999999775432211110 00 234667787
Q ss_pred cCCC-CEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcc
Q 003171 320 DHSR-AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN 397 (842)
Q Consensus 320 ~~~~-~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~ 397 (842)
++++ ..+++++ +++|++||+++++++.++.
T Consensus 235 sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~------------------------------------------------ 266 (357)
T 4g56_B 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSA------------------------------------------------ 266 (357)
T ss_dssp CTTSTTEEEEEESSSCEEEEESSCGGGCEEEC------------------------------------------------
T ss_pred hhcccceEEEeecccceeEEECCCCcEeEEEe------------------------------------------------
Confidence 7654 4666665 6789999998877644432
Q ss_pred eEEecCCcEEEEeecCccccCCCceEEEEECCCC-c-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe---cCCE
Q 003171 398 AIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT---FGSQ 471 (842)
Q Consensus 398 ~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~---dG~~ 471 (842)
.+...|.+++|+|++ + |++|+.|++|++||+ ++++++.+ +|...|+++++ ++++
T Consensus 267 -------------------~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~ 326 (357)
T 4g56_B 267 -------------------VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSK 326 (357)
T ss_dssp -------------------CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTE
T ss_pred -------------------ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCE
Confidence 223446678899886 3 789999999999999 57766654 89999999974 6889
Q ss_pred EEEEecCcEEEEEeCC
Q 003171 472 IWVGYMNGIVQVLDLE 487 (842)
Q Consensus 472 LasGs~DgtIrlWD~~ 487 (842)
|++|+.||+|++||+.
T Consensus 327 l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 327 FTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EEEEETTSCEEEEECC
T ss_pred EEEEcCCCeEEEEECC
Confidence 9999999999999985
No 45
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.96 E-value=1.6e-27 Score=271.59 Aligned_cols=288 Identities=13% Similarity=0.128 Sum_probs=208.9
Q ss_pred eEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 003171 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (842)
Q Consensus 135 ~~~l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG 213 (842)
+.++..+++.|.+ +.|++|++||+.+...... ...| .++|.|++++|++ +|+||+.||
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h-~~~V~~l~~~~~~-~l~s~s~dg 183 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQ-------------------LSGH-DGGVWALKYAHGG-ILVSGSTDR 183 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEE-------------------ECCC-SSCEEEEEECSTT-EEEEEETTS
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEE-------------------EeCC-CcCEEEEEEcCCC-EEEEEeCCC
Confidence 4566677777776 5699999999976543211 1123 7899999999877 999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec--CCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
+|++||+.++ +....+.+|.++|++++|++ ++. |++|+.|++|++||+.+................. .
T Consensus 184 ~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~ 254 (464)
T 3v7d_B 184 TVRVWDIKKG--------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF-H 254 (464)
T ss_dssp CEEEEETTTT--------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE-S
T ss_pred CEEEEECCCC--------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe-e
Confidence 9999999987 67888999999999999995 555 7899999999999997643221111000000000 0
Q ss_pred eec-----eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCC
Q 003171 291 ERS-----YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (842)
Q Consensus 291 ~~s-----~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (842)
... ...+.+ +...+.++. +++..+++++ +++|++||+.+++++..+.+
T Consensus 255 ~~~~~~~~~~~~~~----------~~~~v~~~~--~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-------------- 308 (464)
T 3v7d_B 255 TPEENPYFVGVLRG----------HMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-------------- 308 (464)
T ss_dssp CGGGCTTEEEEECC----------CSSCEEEEE--EETTEEEEEETTSCEEEEETTTTEEEEEECC--------------
T ss_pred ccCCCeEEEEEccC----------ccceEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEecC--------------
Confidence 000 000111 133444543 3456677666 68999999998887655432
Q ss_pred CcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEE
Q 003171 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (842)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIr 443 (842)
|...|.+++++|++. +++|+.||+|+
T Consensus 309 -----------------------------------------------------~~~~v~~~~~~~~~~~l~sg~~dg~i~ 335 (464)
T 3v7d_B 309 -----------------------------------------------------HTDRIYSTIYDHERKRCISASMDTTIR 335 (464)
T ss_dssp -----------------------------------------------------CSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred -----------------------------------------------------CCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 223455677888876 89999999999
Q ss_pred EEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-Ccccccc-cccccCEEEEEeCCCEEEEEcCCCCe
Q 003171 444 QWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW-VAHSSPVIKMAVGAGYIFTLANHGGI 520 (842)
Q Consensus 444 lWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l-~gH~~~V~sla~dg~~l~S~S~DgtI 520 (842)
+||+ +++++.++.+|...|.++++++++|++|+.||+|++||+. ++..... ..+...+.++.++++.+++++ |++|
T Consensus 336 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i 414 (464)
T 3v7d_B 336 IWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQF 414 (464)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeE
Confidence 9999 7999999999999999999999999999999999999997 4433322 223334555668999999998 9999
Q ss_pred eeccccCCCCCc
Q 003171 521 RGWNVTSPGPLD 532 (842)
Q Consensus 521 rvWd~~~~~~~d 532 (842)
++||+.+...+.
T Consensus 415 ~iwd~~~g~~~~ 426 (464)
T 3v7d_B 415 NIYNLRSGKLVH 426 (464)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCcEEe
Confidence 999998765543
No 46
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=5.2e-28 Score=271.42 Aligned_cols=234 Identities=22% Similarity=0.325 Sum_probs=187.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccC------------------CcEEEEEEecC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------------GPVLSLCISSY 252 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~------------------~~V~slafs~d 252 (842)
.++|.|++|+|+|++|++|+ |+++++|++.++ +.+..+.+|. ..|++++|+|+
T Consensus 64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--------SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC--------CEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred CCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC--------CEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence 78999999999999999987 789999999887 4555565553 24999999999
Q ss_pred CC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-
Q 003171 253 GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG- 330 (842)
Q Consensus 253 G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s- 330 (842)
|+ |++|+.|++|+|||+.+++....+ .+| ...+.++++.+++..+++++
T Consensus 135 g~~l~s~~~d~~i~iwd~~~~~~~~~~-------------------~~h----------~~~v~~~~~~p~~~~l~s~s~ 185 (393)
T 1erj_A 135 GKFLATGAEDRLIRIWDIENRKIVMIL-------------------QGH----------EQDIYSLDYFPSGDKLVSGSG 185 (393)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEE-------------------CCC----------SSCEEEEEECTTSSEEEEEET
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEE-------------------ccC----------CCCEEEEEEcCCCCEEEEecC
Confidence 98 789999999999999765322211 122 45678888888888888877
Q ss_pred CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEe
Q 003171 331 FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (842)
Q Consensus 331 ~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~ 410 (842)
|++|++||++++++..++..+
T Consensus 186 d~~v~iwd~~~~~~~~~~~~~----------------------------------------------------------- 206 (393)
T 1erj_A 186 DRTVRIWDLRTGQCSLTLSIE----------------------------------------------------------- 206 (393)
T ss_dssp TSEEEEEETTTTEEEEEEECS-----------------------------------------------------------
T ss_pred CCcEEEEECCCCeeEEEEEcC-----------------------------------------------------------
Confidence 689999999998875544211
Q ss_pred ecCccccCCCceEEEEECC-CCc-EEEEeCCCeEEEEcC-CCCeeeee-------ecCCccEEEEEe--cCCEEEEEecC
Q 003171 411 AKGGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDF-------QYLPFAVQCLCT--FGSQIWVGYMN 478 (842)
Q Consensus 411 ~~g~~~~~~~~v~al~~s~-dg~-l~Sgs~DgtIrlWD~-~g~~l~~l-------~~H~~~V~sls~--dG~~LasGs~D 478 (842)
..+.+++++| +|. +++|+.|++|++||+ +++++..+ .+|...|.++++ +|++|++|+.|
T Consensus 207 ---------~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d 277 (393)
T 1erj_A 207 ---------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277 (393)
T ss_dssp ---------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ---------CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 1234566777 665 889999999999999 68877776 579999999875 78999999999
Q ss_pred cEEEEEeCC-------------CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCC
Q 003171 479 GIVQVLDLE-------------GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 479 gtIrlWD~~-------------g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
++|+|||+. +.+..++.+|.+.|.++++ ++.+++|+|.|++|++||+.+..+
T Consensus 278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~ 344 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 344 (393)
T ss_dssp SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 999999975 2345678899999999985 788999999999999999876544
No 47
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=268.81 Aligned_cols=239 Identities=14% Similarity=0.135 Sum_probs=186.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCccee-EEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEV-LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~-~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
+.|.+++|+|+|++|+||+.|++||+|++.++. .... ....+|.+.|++|+|+|+|+ |+|||.|++|+||++
T Consensus 17 ~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~------~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~ 90 (345)
T 3fm0_A 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDS------WICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90 (345)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEEEETTE------EEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCc------ceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence 389999999999999999999999999998751 0111 22379999999999999998 789999999999998
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.+..... .. .+.+| ...|.++++++++..+++++ |++|++||+.++.....+
T Consensus 91 ~~~~~~~--------~~---------~~~~h----------~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 143 (345)
T 3fm0_A 91 NQDDFEC--------VT---------TLEGH----------ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV 143 (345)
T ss_dssp CCC-EEE--------EE---------EECCC----------SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE
T ss_pred cCCCeEE--------EE---------EccCC----------CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE
Confidence 6532110 00 11222 45688899999999998887 689999998765321110
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
. .+..|...|.+++++
T Consensus 144 ~----------------------------------------------------------------~~~~h~~~v~~~~~~ 159 (345)
T 3fm0_A 144 S----------------------------------------------------------------VLNSHTQDVKHVVWH 159 (345)
T ss_dssp E----------------------------------------------------------------EECCCCSCEEEEEEC
T ss_pred E----------------------------------------------------------------EecCcCCCeEEEEEC
Confidence 0 022344567788999
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCC--eeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC--C------------
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGN--RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--G------------ 488 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~--~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~--g------------ 488 (842)
|++. |++|+.|++|++||. +++ ++.++.+|...|+++++ +|++|++|+.|++|+|||.. +
T Consensus 160 p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~ 239 (345)
T 3fm0_A 160 PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP 239 (345)
T ss_dssp SSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred CCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence 9987 899999999999999 553 56789999999999875 78999999999999999952 1
Q ss_pred --cccccccc-cccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 489 --NLLGGWVA-HSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 489 --~~i~~l~g-H~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+++.++.+ |...|+++++ ++..+++++.|++|++|+...
T Consensus 240 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 240 SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP 283 (345)
T ss_dssp EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence 22344544 8999999985 678999999999999999764
No 48
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=4.9e-27 Score=300.49 Aligned_cols=341 Identities=14% Similarity=0.129 Sum_probs=221.0
Q ss_pred ceeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~~~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
..+.+++.+.+ .+.+ +.|++|++||+.+...... + ..| ..+|.|++|+|+|++|++|
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~-----------------~--~~h-~~~v~~~~~s~~~~~l~s~ 675 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD-----------------I--KAH-EDEVLCCAFSSDDSYIATC 675 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-----------------E--CCC-SSCEEEEEECTTSSEEEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE-----------------e--ccC-CCCEEEEEEecCCCEEEEE
Confidence 35666776533 4554 5689999999976543211 1 123 7899999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC---EEEeeCCCcEEEEeCCCccceeecCCCceeee
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~---L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~ 286 (842)
+.||+|++||+.++ +.+.++.+|.++|++++|+|++. +++|+.|++|++||+.++.....+..+
T Consensus 676 ~~d~~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h----- 742 (1249)
T 3sfz_A 676 SADKKVKIWDSATG--------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH----- 742 (1249)
T ss_dssp ETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC-----
T ss_pred eCCCeEEEEECCCC--------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC-----
Confidence 99999999999997 67888999999999999999653 679999999999999876543333222
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEee----------------
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN---------------- 349 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~---------------- 349 (842)
...+.++++++++..+++++ +++|++||+.+++....+.
T Consensus 743 ------------------------~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1249)
T 3sfz_A 743 ------------------------TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE 798 (1249)
T ss_dssp ------------------------SSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCC
T ss_pred ------------------------CCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcccccc
Confidence 23344555555555555444 3455555555554444332
Q ss_pred ---------------------------------------cCCceEeeeecccCCCccc--ccceEEEEEecC--------
Q 003171 350 ---------------------------------------IDGQIENRVDMSLLPDFAM--EDEFKTKIVTSS-------- 380 (842)
Q Consensus 350 ---------------------------------------~~~~~~~~~~~s~~~~~~~--~~~~~~~~~s~~-------- 380 (842)
++......+.+++.....+ ..+..+++|...
T Consensus 799 ~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 878 (1249)
T 3sfz_A 799 VIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 878 (1249)
T ss_dssp CCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec
Confidence 1211112222222211110 001111222211
Q ss_pred -CCCccceeeeEeecCcceEEecCCcEEEEeecCc------------------------------------------c-c
Q 003171 381 -KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG------------------------------------------F-G 416 (842)
Q Consensus 381 -~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~------------------------------------------~-~ 416 (842)
.....+..+.|.+++...+++..++..++|.... . .
T Consensus 879 ~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY 958 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE
T ss_pred CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE
Confidence 1122234566767666677777776665553000 0 0
Q ss_pred cCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCcccc
Q 003171 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLG 492 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~ 492 (842)
.....+.+++++|+|. +++|+.||.|++||+ +++.+..+.+|...|+++++ +|++|++|+.||+|++||+......
T Consensus 959 ~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE
Confidence 0123466777788776 677778888888888 67888888888888887754 6788888888888888888743333
Q ss_pred cccccccCEEEEEe-CCCEEEEEcCCCCeeeccccCCCC
Q 003171 493 GWVAHSSPVIKMAV-GAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 493 ~l~gH~~~V~sla~-dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
.+.+|...|.++++ .+..+++++.|++|++||+.+..+
T Consensus 1039 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 1077 (1249)
T 3sfz_A 1039 FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI 1077 (1249)
T ss_dssp CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC
T ss_pred EEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce
Confidence 55688888888875 345677888888888888766554
No 49
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=1.3e-28 Score=268.90 Aligned_cols=304 Identities=12% Similarity=0.136 Sum_probs=216.3
Q ss_pred eeEEEEec-----CC-EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC----
Q 003171 134 FLRTIVCT-----EE-QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA---- 202 (842)
Q Consensus 134 ~~~~l~~~-----~~-~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd---- 202 (842)
.+.+++.. +. .+++ +.++.|++||+.+...... ...+....+ ...|.|++|+|+
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--------------~~~~~~~~~-~~~v~~~~~~~~~~~~ 84 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--------------LQSYVDADA-DENFYTCAWTYDSNTS 84 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--------------EEEEECSCT-TCCEEEEEEEECTTTC
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--------------eeeccccCC-CCcEEEEEeccCCCCC
Confidence 56667665 23 4554 5688999999975433211 000111112 568999999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec-CCC-EEEeeCCCcEEEEeCCCccceeecCC
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~ 280 (842)
+++|++|+.||+|++||+.++ +.+..+.+|.++|++++|+| ++. |++|+.||+|++||+.+++....+..
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITM--------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTC--------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCEEEEecCCCEEEEEEchhc--------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 679999999999999999987 67788999999999999999 777 78999999999999976543222210
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeee
Q 003171 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (842)
Q Consensus 281 ~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (842)
+.+| ...+.++++++++..+++++ +++|++||+.+++.+..+... ..
T Consensus 157 ----------------~~~~----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~ 204 (366)
T 3k26_A 157 ----------------VEGH----------RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES------YD 204 (366)
T ss_dssp ----------------TTSC----------SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHH------HT
T ss_pred ----------------cccc----------cCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccccee------EE
Confidence 0111 45688889988888888876 679999999988764433220 01
Q ss_pred cccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCC
Q 003171 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN 439 (842)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~D 439 (842)
+++........ +.. ..... ......|...|.+++++ +..+++++.|
T Consensus 205 ~~~~~~~~~~~-----------------~~~----------~~~~~------~~~~~~~~~~v~~~~~~-~~~l~~~~~d 250 (366)
T 3k26_A 205 YNPNKTNRPFI-----------------SQK----------IHFPD------FSTRDIHRNYVDCVRWL-GDLILSKSCE 250 (366)
T ss_dssp CCGGGCSSCCC-----------------CEE----------ECCCS------EEECSSCSSCCCEEEEE-TTEEEEECSS
T ss_pred ecCCCCccccc-----------------cee----------eccCc------cccccCCcceEEEEEEc-CCEEEEEecC
Confidence 11110000000 000 00000 00123466778888888 5568999999
Q ss_pred CeEEEEcC-CCCe--------------eeeeecCCccEEEE--Eec--CCEEEEEecCcEEEEEeCC-Ccc----ccccc
Q 003171 440 GLLLQWDP-NGNR--------------LQDFQYLPFAVQCL--CTF--GSQIWVGYMNGIVQVLDLE-GNL----LGGWV 495 (842)
Q Consensus 440 gtIrlWD~-~g~~--------------l~~l~~H~~~V~sl--s~d--G~~LasGs~DgtIrlWD~~-g~~----i~~l~ 495 (842)
+.|++||+ ++++ +..+.+|...|+++ +++ |++|++|+.||.|++||+. +++ +..+.
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 330 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT 330 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc
Confidence 99999998 5543 77888899999876 567 9999999999999999997 543 34788
Q ss_pred cc--ccCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 496 AH--SSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 496 gH--~~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
+| ...|+++++ ++++|++++.||.|++||+.
T Consensus 331 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 331 HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 88 799999985 78899999999999999974
No 50
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.96 E-value=8.7e-28 Score=259.78 Aligned_cols=239 Identities=10% Similarity=0.093 Sum_probs=186.9
Q ss_pred ceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003171 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (842)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~ 310 (842)
+...++++|.+.|++|+|+|+|. |+||+.||+|+|||+.++.....+. .+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-------------------~~---------- 54 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ-------------------VT---------- 54 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-------------------CC----------
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee-------------------cc----------
Confidence 45678999999999999999998 7899999999999997653222111 11
Q ss_pred cCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceee
Q 003171 311 TSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSF 389 (842)
Q Consensus 311 s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~ 389 (842)
...+.++.+.+++..+++++ |++|++||+.+++++..+.+|...+..+.
T Consensus 55 ~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~------------------------------ 104 (304)
T 2ynn_A 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA------------------------------ 104 (304)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE------------------------------
T ss_pred CCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEE------------------------------
Confidence 34577788888888888877 57999999999999999887765443333
Q ss_pred eEeecCcceEEecCCcEEEEee--c-----CccccCCCceEEEEECC-CCc-EEEEeCCCeEEEEcC-CCCeeeeee-cC
Q 003171 390 GFFQRSRNAIMGAADAVRRVAA--K-----GGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQ-YL 458 (842)
Q Consensus 390 ~~~~~~~~~~~g~~~~v~~v~~--~-----g~~~~~~~~v~al~~s~-dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~-~H 458 (842)
|.+++...++|..++..++|. . ..+.+|...|.+++|+| ++. +++|+.|++|++||+ ++.+...+. +|
T Consensus 105 -~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~ 183 (304)
T 2ynn_A 105 -VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183 (304)
T ss_dssp -ECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCC
T ss_pred -EcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCC
Confidence 333344455666666555554 1 13556888999999998 555 899999999999999 566655554 56
Q ss_pred CccEEEEEe----cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCC
Q 003171 459 PFAVQCLCT----FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 459 ~~~V~sls~----dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
...|.++.. ++++|++|+.|++|+|||++ ++++.++.+|...|.++++ ++..++|+|.|++||+||+.++..
T Consensus 184 ~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 678887754 57799999999999999997 7889999999999999884 677899999999999999876543
No 51
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-27 Score=259.21 Aligned_cols=280 Identities=12% Similarity=0.095 Sum_probs=216.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|++|+|++++|++|+.||.|++||+.++ +....+.+|.+.|++++|+|+++ |++++.|++|++||+
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 889999999999999999999999999999987 67888999999999999999997 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC------CcEEEEEccCCc
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------LSFALWDARTRE 343 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~------~tI~lWD~~tg~ 343 (842)
.+++....+. ....+..+++++++..++++.. +.|++||+.++.
T Consensus 104 ~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~ 153 (369)
T 3zwl_B 104 SNGQCVATWK------------------------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153 (369)
T ss_dssp TTCCEEEEEE------------------------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred CCCcEEEEee------------------------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence 7654322111 1345777888888888877663 689999997764
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec---C----ccc
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---G----GFG 416 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~---g----~~~ 416 (842)
....+..... .. . ..............+.+.+++...+++..++..+++.. + .+.
T Consensus 154 ~~~~~~~~~~-------~~---------~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 215 (369)
T 3zwl_B 154 ATHELTKVSE-------EP---------I--HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID 215 (369)
T ss_dssp TTCCEEEECS-------SC---------S--EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE
T ss_pred cceeeccccc-------ce---------e--eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe
Confidence 3221111000 00 0 00011111113335566676777777888777666652 1 234
Q ss_pred cCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCc-------------
Q 003171 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG------------- 479 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~Dg------------- 479 (842)
.+...|.+++++|++. |++++.|+.|++||+ +++++..+. +...+.+++ ++|+++++|+.++
T Consensus 216 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (369)
T 3zwl_B 216 LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGK 294 (369)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------
T ss_pred cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCc
Confidence 5778899999999997 789999999999999 688888887 677888775 4789999999888
Q ss_pred -EEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 480 -IVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 480 -tIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.|++||.. ++++..+.+|.+.|.++++ +++++++++.|++|++|++..
T Consensus 295 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 295 FEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 89999987 7889999999999999985 788999999999999999864
No 52
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=4.1e-27 Score=258.77 Aligned_cols=243 Identities=17% Similarity=0.166 Sum_probs=180.8
Q ss_pred CCCeEEEEE-----cC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCc
Q 003171 191 VSSVMCMVG-----DE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG 263 (842)
Q Consensus 191 ~~~V~~la~-----dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt 263 (842)
..+|.|++| ++ ++++|+||+.|++||+||+.++... .........+.+|..+|++++|+|++. |+|||.|++
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~-~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~ 99 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN-GYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKT 99 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS-SBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSE
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc-cccccccchhccCCCceEEEEECCCCCEEEEEcCCCc
Confidence 789999999 76 8999999999999999998764100 000134567899999999999999998 689999999
Q ss_pred EEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCC
Q 003171 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR 342 (842)
Q Consensus 264 IrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg 342 (842)
||+||+.+++....+ .+| ...+.++++++++..+++++ +++|++||+...
T Consensus 100 v~lwd~~~~~~~~~~-------------------~~h----------~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 100 LRLWDLRTGTTYKRF-------------------VGH----------QSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150 (343)
T ss_dssp EEEEETTSSCEEEEE-------------------ECC----------CSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred EEEEECCCCcEEEEE-------------------cCC----------CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence 999999775432211 112 45688899999888888876 689999998733
Q ss_pred cEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCce
Q 003171 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (842)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (842)
....+.. ...|...|
T Consensus 151 -~~~~~~~----------------------------------------------------------------~~~~~~~v 165 (343)
T 2xzm_R 151 -CKFSSAE----------------------------------------------------------------KENHSDWV 165 (343)
T ss_dssp -EEEECCT----------------------------------------------------------------TTSCSSCE
T ss_pred -ceeeeec----------------------------------------------------------------ccCCCcee
Confidence 2221110 00122223
Q ss_pred EEEEECCCC-----------cEEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-C
Q 003171 423 EALTTSIDG-----------MIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-G 488 (842)
Q Consensus 423 ~al~~s~dg-----------~l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g 488 (842)
.+++++|++ .+++|+.|++|++||.+++++.++.+|...|+++++ +|++|++|+.|++|+|||+. .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~ 245 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 344444443 489999999999999888888899999999999865 78999999999999999984 3
Q ss_pred c-ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCC
Q 003171 489 N-LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 489 ~-~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
. ....+ .|...|.++++ ++.++ +++.|++|++|++.+...
T Consensus 246 ~~~~~~~-~~~~~v~~v~~sp~~~~l-a~~~d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 246 TYPQREF-DAGSTINQIAFNPKLQWV-AVGTDQGVKIFNLMTQSK 288 (343)
T ss_dssp SSCSEEE-ECSSCEEEEEECSSSCEE-EEEESSCEEEEESSSCCS
T ss_pred cccceee-cCCCcEEEEEECCCCCEE-EEECCCCEEEEEeCCCCC
Confidence 3 33333 45667999985 55554 567799999999876543
No 53
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=7.3e-28 Score=262.47 Aligned_cols=277 Identities=13% Similarity=0.118 Sum_probs=203.8
Q ss_pred ceeEEEEecC--CEEEEec-----CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC---
Q 003171 133 CFLRTIVCTE--EQLWAGG-----ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--- 202 (842)
Q Consensus 133 ~~~~~l~~~~--~~l~~~~-----D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd--- 202 (842)
..+.+++... ..+.++. |+.|++||+.+..... .....+ ..+|.|++|+|+
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~------------------~~~~~~-~~~v~~~~~~~~~~~ 79 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL------------------LREIEK-AKPIKCGTFGATSLQ 79 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE------------------EEEEEE-SSCEEEEECTTCCTT
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc------------------eeeecc-cCcEEEEEEcCCCCC
Confidence 3566777654 3565533 8999999997643211 112234 789999999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEE------EecCCC-EEEeeCCCcEEEEeCCCccc-
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLC------ISSYGD-LWSGSEGGGIKIWPWEAIEK- 274 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~sla------fs~dG~-L~SgS~DgtIrvWd~~t~~~- 274 (842)
+++|++|+.||+|++||+.++. .....+.+|.+.|+++. |+|+++ |++|+.|++|++||+.+...
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPE-------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCS-------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC
T ss_pred CceEEEecCCCeEEEEeCCCCC-------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc
Confidence 6999999999999999999862 26778899999999995 467887 78999999999999977542
Q ss_pred eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEE----EcCCCCEEEEeC-CCcEEEEEccCCcEEEEee
Q 003171 275 ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL----SDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (842)
Q Consensus 275 ~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~la----s~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~ 349 (842)
...+..... + ....+.+++ .++++..+++++ ++.|++||+++++++...
T Consensus 153 ~~~~~~~~~----------------~---------~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~- 206 (357)
T 3i2n_A 153 VANMEPVQG----------------E---------NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET- 206 (357)
T ss_dssp SEEECCCTT----------------S---------CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred ceeccccCC----------------C---------CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec-
Confidence 111111100 0 012344555 445677777776 579999999987753221
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
.+...+.+++++|
T Consensus 207 -------------------------------------------------------------------~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 207 -------------------------------------------------------------------NIKNGVCSLEFDR 219 (357)
T ss_dssp -------------------------------------------------------------------ECSSCEEEEEESC
T ss_pred -------------------------------------------------------------------CCCCceEEEEcCC
Confidence 1122355677887
Q ss_pred ---CCc-EEEEeCCCeEEEEcC-CCCeeeeee-----cCCccEEEEEe--cCC-EEEEEecCcEEEEEeCC-C-------
Q 003171 430 ---DGM-IWTGGANGLLLQWDP-NGNRLQDFQ-----YLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLE-G------- 488 (842)
Q Consensus 430 ---dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~-----~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~-g------- 488 (842)
++. +++|+.||.|++||+ +++++..+. +|...|+++++ +|+ +|++|+.||.|++||+. +
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 299 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD 299 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence 665 899999999999999 666665555 89999999865 666 89999999999999975 2
Q ss_pred ------------cccccccccccCEEEEEe--CCCEEE-EEcCCCCeeeccccCC
Q 003171 489 ------------NLLGGWVAHSSPVIKMAV--GAGYIF-TLANHGGIRGWNVTSP 528 (842)
Q Consensus 489 ------------~~i~~l~gH~~~V~sla~--dg~~l~-S~S~DgtIrvWd~~~~ 528 (842)
+++..+.+|.+.|+++++ ++++++ |++.|+.|++|++...
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 357788999999999985 677888 8999999999998764
No 54
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.96 E-value=4.8e-27 Score=260.13 Aligned_cols=270 Identities=15% Similarity=0.181 Sum_probs=198.6
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+.+++.. +..|.+ +.|++|+|||..+..... ....+ ...|.+++|+|+|..|++|+
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~-------------------~~~~~-~~~v~~~~~sp~g~~lasg~ 125 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH-------------------AVTMP-CTWVMACAYAPSGCAIACGG 125 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-------------------EEECS-SSCCCEEEECTTSSEEEEES
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce-------------------EEecC-CCCEEEEEECCCCCEEEEee
Confidence 46666665 335555 569999999986543221 11123 67899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.|+++++|++.... ..........+.+|.+.|.+++|+|++. |+|||.|++|++||+++++....+.
T Consensus 126 ~d~~i~v~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~---------- 193 (354)
T 2pbi_B 126 LDNKCSVYPLTFDK--NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH---------- 193 (354)
T ss_dssp TTSEEEEEECCCCT--TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE----------
T ss_pred CCCCEEEEEEeccc--cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc----------
Confidence 99999999987531 0111234567789999999999999997 8999999999999997754322221
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcC--CCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~--~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
+| ...+.++.+.+ ++..+++++ |++|++||+++++++.++..|...++.+.+
T Consensus 194 ---------~h----------~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~------ 248 (354)
T 2pbi_B 194 ---------GH----------GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY------ 248 (354)
T ss_dssp ---------CC----------SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE------
T ss_pred ---------CC----------CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEE------
Confidence 12 34566666654 356777776 689999999999999888776654443333
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec--C----ccc--cCCCceEEEEECCCCc-EEEEe
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--G----GFG--DDNRRTEALTTSIDGM-IWTGG 437 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g----~~~--~~~~~v~al~~s~dg~-l~Sgs 437 (842)
.+++...+++..++..+++.. + .+. .+...+.+++|+|+|. |++|+
T Consensus 249 -------------------------~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 249 -------------------------YPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp -------------------------CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred -------------------------eCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE
Confidence 333334455555555555531 1 111 1234678899999998 78999
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEe
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (842)
.|++|++||+ +++++..+.+|..+|.++++ +|++|++|+.|++|+||+
T Consensus 304 ~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 304 NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999 89999999999999999864 799999999999999996
No 55
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-27 Score=261.29 Aligned_cols=240 Identities=13% Similarity=0.133 Sum_probs=182.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-cc-cCCcEEEEEEecCCC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QA-HRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l-~g-H~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (842)
..+|.|++++|+ +|+||+.||+|++|++.++. +.....+ .+ |.++|++|+|+|+|+ |++||.|++||||
T Consensus 14 ~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 14 KEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp SSCEEEEEEETT--EEEEEESSSCEEEEECSSSC------CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCceeeeccCCC--EEEEEcCCCEEEEEEecCCC------eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 789999999986 99999999999999998741 1334445 44 999999999999998 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCC-c--
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR-E-- 343 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg-~-- 343 (842)
++....... . ...... .+.+| ...|.++++++++..|++++ |++|++||+.+. .
T Consensus 86 ~~~~~~~~~-~--~~~~~~---------~~~~h----------~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 86 AKEESADRT-F--EMDLLA---------IIEGH----------ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp EC--------C--CCEEEE---------EEC--------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC
T ss_pred EcccCcCcc-c--cceeEE---------EEcCC----------CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe
Confidence 985421100 0 000001 12222 45688999999999999887 689999998432 1
Q ss_pred -EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCce
Q 003171 344 -LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (842)
Q Consensus 344 -~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (842)
++.+ +.+|...|
T Consensus 144 ~~~~~-------------------------------------------------------------------~~~h~~~v 156 (330)
T 2hes_X 144 ECISV-------------------------------------------------------------------LQEHSQDV 156 (330)
T ss_dssp EEEEE-------------------------------------------------------------------ECCCSSCE
T ss_pred EEEEE-------------------------------------------------------------------eccCCCce
Confidence 1111 22455667
Q ss_pred EEEEECCCCc-EEEEeCCCeEEEEcC-CC--CeeeeeecCCccEEEEEe--c--CCEEEEEecCcEEEEEeCCC------
Q 003171 423 EALTTSIDGM-IWTGGANGLLLQWDP-NG--NRLQDFQYLPFAVQCLCT--F--GSQIWVGYMNGIVQVLDLEG------ 488 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs~DgtIrlWD~-~g--~~l~~l~~H~~~V~sls~--d--G~~LasGs~DgtIrlWD~~g------ 488 (842)
.+++++|++. |++|+.|++|++||. ++ +++.++.+|...|.++++ + +.+|++|+.|++|+|||+.+
T Consensus 157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 8889999987 899999999999998 55 688999999999999875 4 56899999999999999752
Q ss_pred ---cccccccc-cccCEEEEEe-CCCEEEEEcCCCCeeeccccC
Q 003171 489 ---NLLGGWVA-HSSPVIKMAV-GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 489 ---~~i~~l~g-H~~~V~sla~-dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.+...+.+ |...|+++++ ++..+++++.|++|++|+...
T Consensus 237 ~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 237 QEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVD 280 (330)
T ss_dssp EEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEET
T ss_pred ceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCC
Confidence 34555655 9999999996 456899999999999999753
No 56
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=3.4e-27 Score=259.10 Aligned_cols=272 Identities=11% Similarity=0.108 Sum_probs=204.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..+|.|++|+|++++|++|+.||+|++||+.++. +.....+.+|.+.|++++|+|+|+ |++|+.|++|++||+
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc------EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 7799999999999999999999999999998851 126788899999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE---E
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL---L 345 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~---l 345 (842)
.+++...... +..+ ...+.++++++++..+++++ ++.|++||+.+++. .
T Consensus 82 ~~~~~~~~~~-----------------~~~~----------~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 134 (372)
T 1k8k_C 82 KGRTWKPTLV-----------------ILRI----------NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 134 (372)
T ss_dssp ETTEEEEEEE-----------------CCCC----------SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred CCCeeeeeEE-----------------eecC----------CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee
Confidence 6543111100 0011 34678888888888888876 57899999988762 2
Q ss_pred EEe-ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee-------------
Q 003171 346 KVF-NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------------- 411 (842)
Q Consensus 346 ~~l-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------------- 411 (842)
..+ ..|......+ .|.+++...+++..++..+++.
T Consensus 135 ~~~~~~~~~~i~~~-------------------------------~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 183 (372)
T 1k8k_C 135 KHIKKPIRSTVLSL-------------------------------DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 183 (372)
T ss_dssp EEECTTCCSCEEEE-------------------------------EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred eeeecccCCCeeEE-------------------------------EEcCCCCEEEEEcCCCCEEEEEccccccccccccc
Confidence 222 2222222233 3333333344444444333332
Q ss_pred -------cC----ccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEe
Q 003171 412 -------KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGY 476 (842)
Q Consensus 412 -------~g----~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs 476 (842)
.+ .+..|...+.+++++|++. |++++.|++|++||+ +++++..+..|..+|.+++ ++|++|++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 262 (372)
T 1k8k_C 184 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG- 262 (372)
T ss_dssp TTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-
T ss_pred ccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-
Confidence 11 2335677899999999996 899999999999999 7999999999999999885 478888887
Q ss_pred cCcEEEEEeCCC--c---cc------------------------------------ccc-cccccCEEEEE---eCC---
Q 003171 477 MNGIVQVLDLEG--N---LL------------------------------------GGW-VAHSSPVIKMA---VGA--- 508 (842)
Q Consensus 477 ~DgtIrlWD~~g--~---~i------------------------------------~~l-~gH~~~V~sla---~dg--- 508 (842)
.|+.|++||+.. . ++ ..+ .+|.+.|++++ .+|
T Consensus 263 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~ 342 (372)
T 1k8k_C 263 HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 342 (372)
T ss_dssp TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSC
T ss_pred eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcce
Confidence 899999999754 1 11 233 59999999997 356
Q ss_pred CEEEEEcCCCCeeeccccC
Q 003171 509 GYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 509 ~~l~S~S~DgtIrvWd~~~ 527 (842)
.+++|+|.||+|++|++.+
T Consensus 343 ~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 343 SQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp SEEEEEETTSEEEEEEHHH
T ss_pred eeEEEecCCCceEEEEecC
Confidence 8999999999999999754
No 57
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.4e-27 Score=294.41 Aligned_cols=165 Identities=9% Similarity=0.042 Sum_probs=117.6
Q ss_pred eeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~~~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+.+++.+.+ .|.+ +.|++|+|||..+.... + ...+ ..+|.+|+|+| |++|+||+
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~-------------------~-~~~~-~~~V~~l~fsp-g~~L~S~s 76 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV-------------------I-KLED-RSAIKEMRFVK-GIYLVVIN 76 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE-------------------E-ECSS-CCCEEEEEEET-TTEEEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE-------------------E-EcCC-CCCEEEEEEcC-CCEEEEEE
Confidence 4667777643 4444 46999999997653211 0 1112 66899999999 88999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.|++|++||+.++ +.+.++. |.+.|++++|+|+|+ |++|+.||+|++||+.+.... .+.
T Consensus 77 ~D~~v~lWd~~~~--------~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~---------- 136 (902)
T 2oaj_A 77 AKDTVYVLSLYSQ--------KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFK---------- 136 (902)
T ss_dssp TTCEEEEEETTTC--------SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEE----------
T ss_pred CcCeEEEEECCCC--------cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cce----------
Confidence 9999999999987 5566665 778999999999998 789999999999999764321 000
Q ss_pred Eeece---eecccceeccceeeeecCCEEEEEEcCCC-CEEEEeC-CCcEEEEEccCCcEEEEeecC
Q 003171 290 VERSY---IDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKVFNID 351 (842)
Q Consensus 290 ~~~s~---~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~v~s~s-~~tI~lWD~~tg~~l~~l~~~ 351 (842)
+.... ..+++| ...|.++++++.+ ..+++++ +++| +||++++++++++..+
T Consensus 137 i~~~~~~~~~~~~h----------~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~ 192 (902)
T 2oaj_A 137 LDNLQKSSFFPAAR----------LSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYE 192 (902)
T ss_dssp ECCHHHHHTCSSSC----------CCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCC
T ss_pred eccccccccccccC----------CCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecc
Confidence 00000 011222 3467788888753 5666666 5688 9999999999888765
No 58
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.4e-28 Score=285.42 Aligned_cols=305 Identities=10% Similarity=-0.024 Sum_probs=194.0
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeee-cCCCeEEEEEcCC------CCEEEEEeCCCcEEEEEC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEA------SGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~V~~la~dpd------g~~LaSGs~DGtIrlWdl 220 (842)
+.|++|+|||+.+..... .....+. +.+.|.+|+|+|+ +++||||+.||+||+||+
T Consensus 180 s~D~tI~iWd~~~~~~~~-----------------~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~ 242 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHC-----------------VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEI 242 (524)
T ss_dssp --CEEEEEEEEETTTCCE-----------------EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEEC
T ss_pred CCCceEEEEEccCCCCCc-----------------eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEc
Confidence 569999999986532110 0011111 1678999999996 579999999999999999
Q ss_pred CCCccCCC---CCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeec
Q 003171 221 NARLLDSD---DGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (842)
Q Consensus 221 ~~g~~~~~---~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l 297 (842)
.++.+... .......++.+|.++|++++|++++.|++||.||+|++||+.+...... .+
T Consensus 243 ~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~------------------~~ 304 (524)
T 2j04_B 243 IDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSF------------------YD 304 (524)
T ss_dssp CCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSE------------------EE
T ss_pred CCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceE------------------Ee
Confidence 87521000 0011235788999999999999987799999999999999976421110 01
Q ss_pred ccceeccceeeeecCCEEEE--EEcCCC-CEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceE
Q 003171 298 RSHLSVNGFSSILTSDIKNL--LSDHSR-AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (842)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~l--as~~~~-~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (842)
.+| ...|.++ ++.+++ ..+++++ |++|+|||+++++++.++.++...
T Consensus 305 ~~H----------~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~------------------- 355 (524)
T 2j04_B 305 QVH----------DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG------------------- 355 (524)
T ss_dssp ECS----------SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC-------------------
T ss_pred ecc----------cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc-------------------
Confidence 112 4467777 345555 6778777 689999999998876665433210
Q ss_pred EEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCceEEEEECCCCc-EEEEeCCCeEEEEc
Q 003171 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWD 446 (842)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD 446 (842)
..+.++.|.+++...+.+..++..+++. .+ .+.+|...|.+|+|+|+|. |+||+.||+|++||
T Consensus 356 ----------~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 356 ----------SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp ----------CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred ----------CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 0011234555444445555565555554 11 2456888999999999997 89999999999999
Q ss_pred CCCCeeeeeecC-----CccEEEEE--ecCCEEEEEecCcEEEEEeCCCcccccccccccCEEEEEeCC-----CEEEEE
Q 003171 447 PNGNRLQDFQYL-----PFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGA-----GYIFTL 514 (842)
Q Consensus 447 ~~g~~l~~l~~H-----~~~V~sls--~dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~dg-----~~l~S~ 514 (842)
+.+++++.++.+ ...|.+++ ++|+.+. ...+..+..|+.+|.++.++.+|...|++|++++ ..+++|
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg 504 (524)
T 2j04_B 426 AARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFS 504 (524)
T ss_dssp SCSSTTTCC------CCCCEEEECBCCSSSCEEE-ECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEE
T ss_pred chHhhccccccCccceeeeEEEEeccCCCCCeEE-ccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhh
Confidence 966555544321 12466664 4666442 2222223333345888999999999999999643 389999
Q ss_pred cCCCCeeeccccC
Q 003171 515 ANHGGIRGWNVTS 527 (842)
Q Consensus 515 S~DgtIrvWd~~~ 527 (842)
+.||+||||++..
T Consensus 505 ~~~g~vrlw~l~~ 517 (524)
T 2j04_B 505 NSAGLLTLEYLSL 517 (524)
T ss_dssp CTTSEEEEEECSC
T ss_pred ccCceEEEEEccc
Confidence 9999999999764
No 59
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.2e-27 Score=248.90 Aligned_cols=266 Identities=17% Similarity=0.152 Sum_probs=205.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|+++ |++++|++|+.||+|++||+.++ .....+.+|.+.|++++|+|+++ |++|+.|+.|++|++
T Consensus 18 ~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 18 DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ--------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp SSCEEEEEE-EETTEEEEEETTSEEEEEEESSS--------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC--------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 789999999 89999999999999999999886 66777899999999999999998 789999999999998
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
....... ... .+.+| ...+.++.. ++..+++++ +++|++|| +++.+..+
T Consensus 89 ~~~~~~~-------~~~---------~~~~~----------~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~ 138 (313)
T 3odt_A 89 FATSGED-------PLY---------TLIGH----------QGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL 138 (313)
T ss_dssp TCCTTSC-------C-C---------EECCC----------SSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE
T ss_pred eecCCCC-------ccc---------chhhc----------ccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec
Confidence 6532100 000 01111 345666666 345666655 68999999 66776666
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEee-cCcceEEecCCcEEEEeecC----cccc-CCCce
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAAKG----GFGD-DNRRT 422 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~-~~~~~~~g~~~~v~~v~~~g----~~~~-~~~~v 422 (842)
..+......+ .+.+ .+...+++..++..+++..+ .+.. +...+
T Consensus 139 ~~~~~~v~~~-------------------------------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i 187 (313)
T 3odt_A 139 QAHNASVWDA-------------------------------KVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVV 187 (313)
T ss_dssp ECCSSCEEEE-------------------------------EEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCE
T ss_pred ccCCCceeEE-------------------------------EEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccE
Confidence 6554432222 2222 23334555555555554422 2333 67789
Q ss_pred EEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Ccccccccccc
Q 003171 423 EALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (842)
Q Consensus 423 ~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (842)
.+++++|++.+++|+.||.|++||+ +++++..+.+|...|+++++ +| +|++|+.||+|++||++ ++++..+..|.
T Consensus 188 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 266 (313)
T 3odt_A 188 RHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA 266 (313)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred EEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC
Confidence 9999999999999999999999999 78999999999999999976 45 79999999999999987 78899999999
Q ss_pred cCEEEEEe--CCCEEEEEcCCCCeeeccccCC
Q 003171 499 SPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 499 ~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
..|.++++ +++ +++++.|+.|++|++...
T Consensus 267 ~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 267 ISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp SCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred ceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 99999985 555 778999999999998653
No 60
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.5e-27 Score=261.16 Aligned_cols=291 Identities=13% Similarity=0.167 Sum_probs=209.9
Q ss_pred eeeecCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC----CCCccCCCCCcceeEEecc----------cCCcEEEEEEe
Q 003171 186 ESVKGVSSVMCMVGDEASG-VVWSGHRDGRIMCWKM----NARLLDSDDGFGEVLSWQA----------HRGPVLSLCIS 250 (842)
Q Consensus 186 ~~~~g~~~V~~la~dpdg~-~LaSGs~DGtIrlWdl----~~g~~~~~~~~~~~~~l~g----------H~~~V~slafs 250 (842)
...| .++|.|++|+|+++ +|++|+.||+|++|++ .++.. .-.......+.. |.+.|++++|+
T Consensus 41 ~~~~-~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 41 EIVK-LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKK--YWKLTIIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp EEEE-CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC--------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred eeec-cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccc--cccccccccccccccccccccCCCCceEEEEEc
Confidence 3344 68999999999999 9999999999999999 77610 000002333333 78899999999
Q ss_pred cCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe
Q 003171 251 SYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA 329 (842)
Q Consensus 251 ~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~ 329 (842)
|+|+ |++|+.||+|++||... .....+ .+| ...+.++++.+++..++++
T Consensus 118 ~~~~~l~~~~~dg~i~i~~~~~-~~~~~~-------------------~~~----------~~~v~~~~~~~~~~~l~~~ 167 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWNKTG-ALLNVL-------------------NFH----------RAPIVSVKWNKDGTHIISM 167 (425)
T ss_dssp TTSSEEEEEETTSCEEEEETTS-CEEEEE-------------------CCC----------CSCEEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCC-Ceeeec-------------------cCC----------CccEEEEEECCCCCEEEEE
Confidence 9998 78999999999999432 211111 111 4467888888888888877
Q ss_pred C-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEE
Q 003171 330 G-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (842)
Q Consensus 330 s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~ 408 (842)
+ +++|++||+.+++.+..+..+.......... ...........+.+.+.+ ..+++..++..+
T Consensus 168 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~ 230 (425)
T 1r5m_A 168 DVENVTILWNVISGTVMQHFELKETGGSSINAE----------------NHSGDGSLGVDVEWVDDD-KFVIPGPKGAIF 230 (425)
T ss_dssp ETTCCEEEEETTTTEEEEEECCC-------------------------------CCCBSCCEEEETT-EEEEECGGGCEE
T ss_pred ecCCeEEEEECCCCcEEEEeeccccCccceeec----------------cccCCcceeeEEEEcCCC-EEEEEcCCCeEE
Confidence 6 6789999999999988876543221000000 000001112234444443 345666666555
Q ss_pred Eee--cC----ccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecC
Q 003171 409 VAA--KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMN 478 (842)
Q Consensus 409 v~~--~g----~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~D 478 (842)
++. .+ .+..|...|.+++++|++. +++++.|+.|++||+ +++++..+.+|...|.++++ +| +|++++.|
T Consensus 231 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d 309 (425)
T 1r5m_A 231 VYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMD 309 (425)
T ss_dssp EEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETT
T ss_pred EEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCC
Confidence 554 11 2345778899999999987 889999999999999 78899999999999999865 56 99999999
Q ss_pred cEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 479 GIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 479 gtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+.|++||+. ++++..+.+|...|.++++ +++++++++.|+.|++|++..
T Consensus 310 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 310 GSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred CcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 999999987 7888999999999999884 788999999999999999864
No 61
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=4.3e-27 Score=261.35 Aligned_cols=289 Identities=11% Similarity=0.097 Sum_probs=210.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC----C---C-EEEeeCCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY----G---D-LWSGSEGG 262 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d----G---~-L~SgS~Dg 262 (842)
..+|.|++|+| ++|++|+.||+|++|++.++. ....+.....+.+|..+|++++|+|+ | + |++|+.|+
T Consensus 16 ~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 16 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLD--NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp SSCEEEEEECS--SEEEEEETTSEEEEEESBCCT--TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcc--cccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 78999999998 899999999999999998861 00112357888999999999999999 8 6 78999999
Q ss_pred cEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEc----CCCCE-EEEeC-CCcEEE
Q 003171 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD----HSRAK-VWSAG-FLSFAL 336 (842)
Q Consensus 263 tIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~----~~~~~-v~s~s-~~tI~l 336 (842)
+|++|++.+....... ... .+..+... .....+.++++. +++.. +++++ ++.|++
T Consensus 92 ~i~iw~~~~~~~~~~~-----~~~---------~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i 152 (397)
T 1sq9_A 92 DLLFYRITREDETKKV-----IFE---------KLDLLDSD-----MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 152 (397)
T ss_dssp CEEEEEEEECTTTCCE-----EEE---------EECCSCTT-----GGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred CEEEEEccCCcccccc-----cce---------eecccccc-----cCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEE
Confidence 9999999764420000 000 00111000 002467788888 77777 77775 678999
Q ss_pred EEccC------CcEEE-----EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCc
Q 003171 337 WDART------RELLK-----VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA 405 (842)
Q Consensus 337 WD~~t------g~~l~-----~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~ 405 (842)
||+.+ ++.+. .+... .. ...........+.+.+++ ..+++..++
T Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~~------~~------------------~~~~~~~~i~~~~~~~~~-~l~~~~~dg 207 (397)
T 1sq9_A 153 WKFHPFADESNSLTLNWSPTLELQGT------VE------------------SPMTPSQFATSVDISERG-LIATGFNNG 207 (397)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEE------EC------------------CSSSSCCCCCEEEECTTS-EEEEECTTS
T ss_pred EeCCccccccccceeeccCcceeeee------ec------------------cccCCCCCceEEEECCCc-eEEEEeCCC
Confidence 99988 55433 32210 00 000011122345566666 667777777
Q ss_pred EEEEee--cC----cccc---C---CCceEEEEECCCCc-EEEEeCC---CeEEEEcC-CCCeeeeeec-----------
Q 003171 406 VRRVAA--KG----GFGD---D---NRRTEALTTSIDGM-IWTGGAN---GLLLQWDP-NGNRLQDFQY----------- 457 (842)
Q Consensus 406 v~~v~~--~g----~~~~---~---~~~v~al~~s~dg~-l~Sgs~D---gtIrlWD~-~g~~l~~l~~----------- 457 (842)
..+++. .+ .+.. | ...+.+++++|++. |++|+.| +.|++||+ +++++..+.+
T Consensus 208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 287 (397)
T 1sq9_A 208 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE 287 (397)
T ss_dssp EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CC
T ss_pred cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccc
Confidence 666664 11 2334 6 78899999999987 7899999 99999999 7899999998
Q ss_pred --CCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cccccccc------cc---------------ccCEEEEEe--CC-
Q 003171 458 --LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWV------AH---------------SSPVIKMAV--GA- 508 (842)
Q Consensus 458 --H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~------gH---------------~~~V~sla~--dg- 508 (842)
|...|.++++ +|++|++|+.|++|+|||+. ++++..+. +| ...|.++++ ++
T Consensus 288 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp BSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence 9999999875 68999999999999999997 77888888 88 999999985 55
Q ss_pred ---------CEEEEEcCCCCeeeccccC
Q 003171 509 ---------GYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 509 ---------~~l~S~S~DgtIrvWd~~~ 527 (842)
+++++++.|+.|++|++.+
T Consensus 368 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 368 RSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp SBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred cccccccccceEEEecCCCcEEEEEcCC
Confidence 6899999999999999865
No 62
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=8.8e-28 Score=273.10 Aligned_cols=272 Identities=12% Similarity=0.083 Sum_probs=189.5
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec-CCC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIrvW 267 (842)
...|+||+|+| ++++||+|+.||+|+|||+.++. ......+.||.++|++|+|+| ++. |+|||.||+||+|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 66899999999 56799999999999999998752 134456789999999999998 565 8899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
|+++......... +. ....+.++++++++..|++++ +++|++||+++. .+.
T Consensus 193 d~~~~~~~~~~~~-------------------~~--------~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~ 244 (435)
T 4e54_B 193 DFKGNILRVFASS-------------------DT--------INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELW 244 (435)
T ss_dssp ETTSCEEEEEECC-------------------SS--------CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCC
T ss_pred eccCCceeEEecc-------------------CC--------CCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeE
Confidence 9965321111100 00 012244567778888888877 579999998654 345
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCc-ceEEecCCcEEEEee--c----Cc---cc
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAA--K----GG---FG 416 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~--~----g~---~~ 416 (842)
++.+|...+..+. |.+.+. ..+++..++..+++. . .. ..
T Consensus 245 ~~~~h~~~v~~v~-------------------------------~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~ 293 (435)
T 4e54_B 245 NLRMHKKKVTHVA-------------------------------LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293 (435)
T ss_dssp CSBCCSSCEEEEE-------------------------------ECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred EEecccceEEeee-------------------------------ecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence 5555544333333 333332 233455555555543 1 11 23
Q ss_pred cCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCcc-------EEE-EEecCCEEEEEe----------
Q 003171 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFA-------VQC-LCTFGSQIWVGY---------- 476 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~-------V~s-ls~dG~~LasGs---------- 476 (842)
.|...|.+++|+|||. |++|+.||+|++||+ +++++..+..|... +.+ ..+++..+++|.
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 373 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT 373 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 5778899999999997 899999999999999 78888877766532 111 123444444443
Q ss_pred --cCcEEEEEeCC-Ccccccc-cccccCEEEEE---eCCCEEEEEcCCCCeeeccccCC
Q 003171 477 --MNGIVQVLDLE-GNLLGGW-VAHSSPVIKMA---VGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 477 --~DgtIrlWD~~-g~~i~~l-~gH~~~V~sla---~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
.+++|++||.. |+++..+ .+|...|.++. ++|++|++|+ |++|++|+++..
T Consensus 374 ~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 374 PYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred ecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 45789999987 7777665 57888888873 4788999876 889999998754
No 63
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=6.2e-28 Score=266.84 Aligned_cols=267 Identities=10% Similarity=0.041 Sum_probs=189.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|++|+|++++|++|+.||+|++|++.++. .+....+.+|.++|++++|+|+|+ |++|+.|++|++||+
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG------WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE------EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc------eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 6799999999999999999999999999998751 134567889999999999999997 899999999999999
Q ss_pred CCcc---ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE-
Q 003171 270 EAIE---KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL- 344 (842)
Q Consensus 270 ~t~~---~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~- 344 (842)
.++. ....+ .+| ...+.++++++++..+++++ +++|++||+.+++.
T Consensus 85 ~~~~~~~~~~~~-------------------~~~----------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 135 (377)
T 3dwl_C 85 RPDGTWKQTLVL-------------------LRL----------NRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW 135 (377)
T ss_dssp ----CCCCEEEC-------------------CCC----------SSCEEEEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred CCCCceeeeeEe-------------------ccc----------CCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence 7643 11111 111 45678888888888787776 67999999998873
Q ss_pred --EEEeec-CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee----------
Q 003171 345 --LKVFNI-DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA---------- 411 (842)
Q Consensus 345 --l~~l~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~---------- 411 (842)
++.+.. |...+..+.+++. +...+++..++..+++.
T Consensus 136 ~~~~~~~~~h~~~v~~~~~~~~-------------------------------~~~l~~~~~d~~i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 136 WVSKHLKRPLRSTILSLDWHPN-------------------------------NVLLAAGCADRKAYVLSAYVRDVDAKP 184 (377)
T ss_dssp CCCEEECSSCCSCEEEEEECTT-------------------------------SSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred eeeeEeecccCCCeEEEEEcCC-------------------------------CCEEEEEeCCCEEEEEEEEecccCCCc
Confidence 556654 4444444444432 22223333333222221
Q ss_pred --------------cCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCe----eeeeecCCccEEEEE--ecC
Q 003171 412 --------------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNR----LQDFQYLPFAVQCLC--TFG 469 (842)
Q Consensus 412 --------------~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~----l~~l~~H~~~V~sls--~dG 469 (842)
...+ .|...|.+++++|+|. |++|+.||+|++||+ ++++ +.++.+|..+|.+++ ++|
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 263 (377)
T 3dwl_C 185 EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES 263 (377)
T ss_dssp CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence 1123 6778899999999998 899999999999999 6777 889999999999885 589
Q ss_pred CEEEEEecCcEEEEEeCC--C-cccc--------------------------------------------------cccc
Q 003171 470 SQIWVGYMNGIVQVLDLE--G-NLLG--------------------------------------------------GWVA 496 (842)
Q Consensus 470 ~~LasGs~DgtIrlWD~~--g-~~i~--------------------------------------------------~l~g 496 (842)
++|++|+.++.+ +|+.. + ++.. ...+
T Consensus 264 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 342 (377)
T 3dwl_C 264 AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTV 342 (377)
T ss_dssp EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSS
T ss_pred CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCcc
Confidence 999999877776 66543 2 1111 1123
Q ss_pred cccCEEEEEe---CCC---EEEEEcCCCCeeeccc
Q 003171 497 HSSPVIKMAV---GAG---YIFTLANHGGIRGWNV 525 (842)
Q Consensus 497 H~~~V~sla~---dg~---~l~S~S~DgtIrvWd~ 525 (842)
|.+.|++|.+ ++. .++|+|.||.|++||+
T Consensus 343 H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 343 HQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 9999999984 233 6999999999999985
No 64
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=2.5e-26 Score=261.02 Aligned_cols=266 Identities=19% Similarity=0.274 Sum_probs=207.5
Q ss_pred CCC-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 191 VSS-VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~-V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
... +.|+.+ +|++|++|+.||+|++||+.++ +....+.+|.++|++++|++ ..|++|+.||+|++||+
T Consensus 118 ~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~-~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 118 DDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTG--------KCLRTLVGHTGGVWSSQMRD-NIIISGSTDRTLKVWNA 186 (445)
T ss_dssp TTSCEEEEEE--ETTEEEEEETTSCEEEEETTTC--------CEEEECCCCSSCEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEE--cCCEEEEEECCCcEEEEECCCC--------cEEEEEcCCCCCEEEEEecC-CEEEEEeCCCeEEEEEC
Confidence 444 567666 4799999999999999999987 67888999999999999983 45899999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.+++....+. +| ...+.++..+ +..+++++ +++|++||+.+++++..+
T Consensus 187 ~~~~~~~~~~-------------------~h----------~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~ 235 (445)
T 2ovr_B 187 ETGECIHTLY-------------------GH----------TSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL 235 (445)
T ss_dssp TTTEEEEEEC-------------------CC----------SSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred CcCcEEEEEC-------------------CC----------CCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 7754322221 11 3346666664 34566555 689999999999998888
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--c----CccccCCCce
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRT 422 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v 422 (842)
..|......+.+ ++...+++..++..+++. . ..+..|...|
T Consensus 236 ~~~~~~v~~~~~---------------------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 282 (445)
T 2ovr_B 236 MGHVAAVRCVQY---------------------------------DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 282 (445)
T ss_dssp ECCSSCEEEEEE---------------------------------CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE
T ss_pred cCCcccEEEEEE---------------------------------CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCce
Confidence 766543322221 122334555555444443 1 1344577788
Q ss_pred EEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-Ccccccccc---c
Q 003171 423 EALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA---H 497 (842)
Q Consensus 423 ~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g---H 497 (842)
.++.+ .+..+++|+.|++|++||+ +++++.++.+|...|.++.+++++|++|+.||+|++||+. ++++.++.+ |
T Consensus 283 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 361 (445)
T 2ovr_B 283 YSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361 (445)
T ss_dssp EEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSC
T ss_pred EEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC
Confidence 88888 3345899999999999999 7999999999999999999999999999999999999986 778888776 8
Q ss_pred ccCEEEEEeCCCEEEEEcCCCCeeeccccCCCCCc
Q 003171 498 SSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLD 532 (842)
Q Consensus 498 ~~~V~sla~dg~~l~S~S~DgtIrvWd~~~~~~~d 532 (842)
...|.+++++++++++++.||+|++||+.+...+.
T Consensus 362 ~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 362 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEECCCEEEEEeCCCeEEEEECCCCceee
Confidence 99999999999999999999999999987754433
No 65
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.95 E-value=1.1e-26 Score=257.78 Aligned_cols=267 Identities=10% Similarity=0.051 Sum_probs=197.4
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEE--ecccCCcEEEEEEec-CCC-EEEeeCCCcEE
Q 003171 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS--WQAHRGPVLSLCISS-YGD-LWSGSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~--l~gH~~~V~slafs~-dG~-L~SgS~DgtIr 265 (842)
..+|.|++|+|++ ++|++|+.||+|++||+.++ ..... +.+|.+.|++++|+| ++. |++|+.|++|+
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ--------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST--------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc--------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 7799999999999 99999999999999999986 33333 358999999999999 555 78999999999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
+||+.+.. ...+... .+ ....+.++++++++..+++++ +++|++||+ ++++
T Consensus 145 iwd~~~~~-~~~~~~~----------------~~----------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~ 196 (383)
T 3ei3_B 145 LRDFSGSV-IQVFAKT----------------DS----------WDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHE 196 (383)
T ss_dssp EEETTSCE-EEEEECC----------------CC----------SSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCE
T ss_pred EEECCCCc-eEEEecc----------------CC----------CCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCE
Confidence 99996421 1111000 00 024578888888888888877 579999999 5777
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCc-ceEEecCCcEEEEee--c----Ccc--
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAA--K----GGF-- 415 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~--~----g~~-- 415 (842)
+..+..|...+..+.+ .+.+. ..+++..++..+++. . +.+
T Consensus 197 ~~~~~~h~~~v~~~~~-------------------------------~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 245 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEF-------------------------------NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIA 245 (383)
T ss_dssp EEEEECSSSCEEEEEE-------------------------------CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEE
T ss_pred EEEeccCCCcEEEEEE-------------------------------CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEE
Confidence 7777766554333333 33333 344555555555543 1 111
Q ss_pred -ccCCCceEEEEECC-CCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCc-----------------cEEEE--EecCCEE
Q 003171 416 -GDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-----------------AVQCL--CTFGSQI 472 (842)
Q Consensus 416 -~~~~~~v~al~~s~-dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~-----------------~V~sl--s~dG~~L 472 (842)
..|...|.+++++| +|. |++++.|++|++||+ ++++++++.+|.. .+.++ +++|++
T Consensus 246 ~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~- 324 (383)
T 3ei3_B 246 EMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL- 324 (383)
T ss_dssp EEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-
T ss_pred EecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-
Confidence 24678899999999 887 889999999999999 6888888876642 22223 346666
Q ss_pred EEEecCcEEEEEeCC-Ccccccccc--cccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 473 WVGYMNGIVQVLDLE-GNLLGGWVA--HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 473 asGs~DgtIrlWD~~-g~~i~~l~g--H~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+|+.|++|+|||+. ++++.++.+ |.+.|..++ +++++|++++ |++|++|++.+
T Consensus 325 -s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 325 -LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp -CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred -ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 77899999999986 788888887 556677666 4889999997 99999999864
No 66
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=3.4e-26 Score=256.74 Aligned_cols=273 Identities=18% Similarity=0.214 Sum_probs=206.2
Q ss_pred eEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 003171 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (842)
Q Consensus 135 ~~~l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG 213 (842)
+..+..+++.+++ +.|+.|++||+.+...... + ...+ ..+|.|++|+|++++|++|+.||
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~-----------------~-~~~~-~~~v~~v~~s~~~~~l~~~~~dg 156 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVSAL-----------------A-ETDE-STYVASVKWSHDGSFLSVGLGNG 156 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEE-----------------E-ECCT-TCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEeEe-----------------e-ecCC-CCCEEEEEECCCCCEEEEECCCC
Confidence 3345555665555 6799999999976543211 1 1113 67899999999999999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
+|++||+.++ +....+.+|.+.|.+++|++ ..|++|+.|++|++||+.........
T Consensus 157 ~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--------------- 212 (401)
T 4aez_A 157 LVDIYDVESQ--------TKLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGT--------------- 212 (401)
T ss_dssp CEEEEETTTC--------CEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEE---------------
T ss_pred eEEEEECcCC--------eEEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcceeeE---------------
Confidence 9999999987 67888999999999999954 24889999999999999743211100
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccce
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
+.+| ...+.++++++++..+++++ +++|++||+.+++++..+..
T Consensus 213 ---~~~~----------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---------------------- 257 (401)
T 4aez_A 213 ---LQGH----------SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN---------------------- 257 (401)
T ss_dssp ---EECC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC----------------------
T ss_pred ---EcCC----------CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC----------------------
Confidence 1112 45678888888888888877 68999999998776554432
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEe--CCCeEEEEcC-
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGG--ANGLLLQWDP- 447 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs--~DgtIrlWD~- 447 (842)
|...|.+++++|++. +++|+ .|++|++||+
T Consensus 258 ---------------------------------------------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~ 292 (401)
T 4aez_A 258 ---------------------------------------------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292 (401)
T ss_dssp ---------------------------------------------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred ---------------------------------------------CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence 223345677888664 45554 6999999999
Q ss_pred CCCeeeeeecCCccEEEEEe--cCCEEEE--EecCcEEEEEeCC-Ccc--cccccccccCEEEEEe--CCCEEEEEcCCC
Q 003171 448 NGNRLQDFQYLPFAVQCLCT--FGSQIWV--GYMNGIVQVLDLE-GNL--LGGWVAHSSPVIKMAV--GAGYIFTLANHG 518 (842)
Q Consensus 448 ~g~~l~~l~~H~~~V~sls~--dG~~Las--Gs~DgtIrlWD~~-g~~--i~~l~gH~~~V~sla~--dg~~l~S~S~Dg 518 (842)
+++++..+. |...|.++++ +|++|++ |+.||.|+|||+. ++. ...+.+|.+.|.++++ +++++++++.|+
T Consensus 293 ~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 293 TGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred CCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 788888886 5678998865 7889988 5589999999986 433 4457899999999884 788999999999
Q ss_pred CeeeccccCCCCC
Q 003171 519 GIRGWNVTSPGPL 531 (842)
Q Consensus 519 tIrvWd~~~~~~~ 531 (842)
+|++|++.....+
T Consensus 372 ~i~iw~~~~~~~~ 384 (401)
T 4aez_A 372 NLKFWRVYDGDHV 384 (401)
T ss_dssp EEEEEECCC----
T ss_pred cEEEEECCCCccc
Confidence 9999998765443
No 67
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=7.2e-27 Score=251.61 Aligned_cols=262 Identities=15% Similarity=0.167 Sum_probs=178.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec--CCC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~-L~SgS~DgtIrvW 267 (842)
..+|.|++|+|++++|++|+.||+|++||+.++. ...+....+.+|.++|++|+|+| +++ |++|+.||+|++|
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT----SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS----CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC----CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 7899999999999999999999999999998752 22235667889999999999999 576 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC--CCEEEEeC-CCcEEEEEccCCcE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
|+.++........ ..... .+.+| ...+..+++.++ +..+++++ +++|++||+.+++.
T Consensus 87 d~~~~~~~~~~~~-~~~~~---------~~~~~----------~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 146 (351)
T 3f3f_A 87 EEDPDQEECSGRR-WNKLC---------TLNDS----------KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD 146 (351)
T ss_dssp EECTTSCTTSSCS-EEEEE---------EECCC----------SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC
T ss_pred ecCCCcccccccC-cceee---------eeccc----------CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH
Confidence 9976432110000 00000 01111 456788888887 77777766 67899999998876
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
+..+...... ... .+ ....+...+.+
T Consensus 147 ~~~~~~~~~~-----------------------~~~---------~~----------------------~~~~~~~~~~~ 172 (351)
T 3f3f_A 147 LRSWTLTSEM-----------------------KVL---------SI----------------------PPANHLQSDFC 172 (351)
T ss_dssp TTCCEEEEEE-----------------------ESC---------SC----------------------CCSSCSCCCEE
T ss_pred hccccccccc-----------------------ccc---------cc----------------------ccCCcccceeE
Confidence 4333211000 000 00 01123334555
Q ss_pred EEECCC---Cc-EEEEeCCCeEEEEcC-CCCe--eeeeecCCccEEEEEe--cC----CEEEEEecCcEEEEEeCCC---
Q 003171 425 LTTSID---GM-IWTGGANGLLLQWDP-NGNR--LQDFQYLPFAVQCLCT--FG----SQIWVGYMNGIVQVLDLEG--- 488 (842)
Q Consensus 425 l~~s~d---g~-l~Sgs~DgtIrlWD~-~g~~--l~~l~~H~~~V~sls~--dG----~~LasGs~DgtIrlWD~~g--- 488 (842)
++++|+ +. +++++.|+.+.+|+. .++. +..+.+|...|+++++ +| ++|++|+.||+|++||+..
T Consensus 173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp EEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-
T ss_pred EEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC
Confidence 666664 33 566666666666655 3332 5556666667766653 44 4666777777777776542
Q ss_pred --------------------------------------------cccccccccccCEEEEEe--CCCEEEEEcCCCCeee
Q 003171 489 --------------------------------------------NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRG 522 (842)
Q Consensus 489 --------------------------------------------~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrv 522 (842)
+++..+.+|.+.|+++++ ++++|+|++.|+.|++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~i 332 (351)
T 3f3f_A 253 PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRL 332 (351)
T ss_dssp --------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEE
Confidence 567888999999999985 7889999999999999
Q ss_pred ccccCCCC
Q 003171 523 WNVTSPGP 530 (842)
Q Consensus 523 Wd~~~~~~ 530 (842)
|++.....
T Consensus 333 w~~~~~~~ 340 (351)
T 3f3f_A 333 WKATYSNE 340 (351)
T ss_dssp EEECTTSC
T ss_pred EecCcCcc
Confidence 99876543
No 68
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=1.9e-25 Score=240.93 Aligned_cols=267 Identities=14% Similarity=0.173 Sum_probs=195.0
Q ss_pred ceeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~~~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
..+.+++...+ .|.+ +.|+.|++||+.+...... ...| ..+|.+++|+|++++|++|
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h-~~~v~~~~~~~~~~~l~s~ 83 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-------------------ISGH-KLGISDVAWSSDSNLLVSA 83 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------------------ECCC-SSCEEEEEECTTSSEEEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh-------------------hccC-CCceEEEEEcCCCCEEEEE
Confidence 35667776643 4554 5699999999875432210 1123 7789999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
+.||+|++||+.++ +.+..+++|.+.|.+++|+|++. |++|+.|++|++||+.+++....+.
T Consensus 84 ~~d~~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------- 146 (312)
T 4ery_A 84 SDDKTLKIWDVSSG--------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP--------- 146 (312)
T ss_dssp ETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC---------
T ss_pred CCCCEEEEEECCCC--------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec---------
Confidence 99999999999987 67788999999999999999998 7899999999999997654322211
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecC-CceEeeeecccCCCc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNID-GQIENRVDMSLLPDF 366 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~-~~~~~~~~~s~~~~~ 366 (842)
.| ...+..+++++++..+++++ +++|++||+.+++++..+..+ .....
T Consensus 147 ----------~~----------~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---------- 196 (312)
T 4ery_A 147 ----------AH----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS---------- 196 (312)
T ss_dssp ----------CC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEE----------
T ss_pred ----------CC----------CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceE----------
Confidence 11 34577788888888888776 679999999999887765321 11111
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCc---eEEEEECCCCc-EEEE
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRR---TEALTTSIDGM-IWTG 436 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~---v~al~~s~dg~-l~Sg 436 (842)
.+.|.+++...+.+..++..+++. .+ .+..+... +......+++. +++|
T Consensus 197 ---------------------~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 255 (312)
T 4ery_A 197 ---------------------FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255 (312)
T ss_dssp ---------------------EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred ---------------------EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence 233444445556666666666554 11 12223222 22233345555 8999
Q ss_pred eCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEe--cCcEEEEEeCC
Q 003171 437 GANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGY--MNGIVQVLDLE 487 (842)
Q Consensus 437 s~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs--~DgtIrlWD~~ 487 (842)
+.||+|++||+ ++++++++.+|...|.++++ ++.+|++++ .|++|++|+.+
T Consensus 256 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999 78999999999999999865 688999987 69999999864
No 69
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6e-27 Score=264.83 Aligned_cols=280 Identities=13% Similarity=0.157 Sum_probs=196.2
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEE
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNA---RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~---g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIr 265 (842)
.++|.|++|+| ++++|+||+.||+|++||+.+ +. ..+....+ +|.++|++|+|+|++. |++|+.||+|+
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 136 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-----VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQII 136 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-----CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-----ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 78999999999 999999999999999999876 31 11223333 6999999999999987 78999999999
Q ss_pred EEeCC---CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEE--EcCCCCEEEEeC-CCcEEEEEc
Q 003171 266 IWPWE---AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL--SDHSRAKVWSAG-FLSFALWDA 339 (842)
Q Consensus 266 vWd~~---t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~la--s~~~~~~v~s~s-~~tI~lWD~ 339 (842)
+||++ ++........+ .+..+ .+. ..+ ....+.++. ..+++..+++++ +++|++||+
T Consensus 137 vwd~~~~~~~~~~~~~~~~--~i~~~-------~~~----~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 199 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCE--CIRKI-------NLK----NFG----KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI 199 (437)
T ss_dssp EEEEEEEEETTEEEEEEEE--EEEEE-------EGG----GGS----SCCCEEEEEEEECSSCEEEEEEETTSEEEEEET
T ss_pred EEEeccccCCceeeccccc--eeEEE-------Ecc----Ccc----cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 99985 22211111000 11100 000 000 122344444 345666777776 579999999
Q ss_pred cCCcEEEEeec--CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC--
Q 003171 340 RTRELLKVFNI--DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG-- 413 (842)
Q Consensus 340 ~tg~~l~~l~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g-- 413 (842)
++++++.++.. |...+. ++.|.+++...++|..++..+++. .+
T Consensus 200 ~~~~~~~~~~~~~h~~~v~-------------------------------~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 248 (437)
T 3gre_A 200 RTLERLQIIENSPRHGAVS-------------------------------SICIDEECCVLILGTTRGIIDIWDIRFNVL 248 (437)
T ss_dssp TTCCEEEEEECCGGGCCEE-------------------------------EEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred CCCeeeEEEccCCCCCceE-------------------------------EEEECCCCCEEEEEcCCCeEEEEEcCCccE
Confidence 99999888875 222222 233444445556666677666654 12
Q ss_pred --ccc-cCCCceEEEEE----CCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecC--------------------------
Q 003171 414 --GFG-DDNRRTEALTT----SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL-------------------------- 458 (842)
Q Consensus 414 --~~~-~~~~~v~al~~----s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H-------------------------- 458 (842)
.+. .+...|.++++ ++++. |++|+.||+|++||+ ++++++++.+|
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 122 45567888854 45675 889999999999999 68888877754
Q ss_pred CccEEEEEe-cCCEEEEEecCcEEEEEeCC-Ccccccccc-------------------------------------ccc
Q 003171 459 PFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA-------------------------------------HSS 499 (842)
Q Consensus 459 ~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~g-------------------------------------H~~ 499 (842)
...|+++++ ++++|++|+.|++|++||+. ++++..+.+ |.+
T Consensus 329 ~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 408 (437)
T 3gre_A 329 LNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHD 408 (437)
T ss_dssp GGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CC
T ss_pred CCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccccc
Confidence 455777765 56799999999999999987 666666655 899
Q ss_pred CEEEEEe--C--CCEEEEEcCCCCeeecc
Q 003171 500 PVIKMAV--G--AGYIFTLANHGGIRGWN 524 (842)
Q Consensus 500 ~V~sla~--d--g~~l~S~S~DgtIrvWd 524 (842)
.|++|++ + +.+|+|++.||.|++|+
T Consensus 409 ~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 409 IINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 9999874 4 56899999999999995
No 70
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.95 E-value=5.5e-27 Score=261.83 Aligned_cols=279 Identities=18% Similarity=0.228 Sum_probs=198.3
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+.+++.. ++.|.+ +.|++|+|||+.+..... ....| ..+|.+++|+|+|++|++|+
T Consensus 68 ~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~-------------------~~~~h-~~~v~~~~~s~~g~~las~~ 127 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH-------------------AIKLH-CPWVMECAFAPNGQSVACGG 127 (380)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE-------------------EEECC-CTTCCCCEECTTSSEEEECC
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce-------------------EEecC-CCCEEEEEECCCCCEEEEee
Confidence 46677765 335555 569999999987643221 11233 77899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC--CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
.|++|++|++.+... ..........+.||.+.|.+++|+|++ .|+|||.|++|++||+.++.....+....
T Consensus 128 ~d~~v~iw~~~~~~~-~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~------ 200 (380)
T 3iz6_a 128 LDSACSIFNLSSQAD-RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF------ 200 (380)
T ss_dssp SSSCCEEEECCCCSS-CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS------
T ss_pred CCCcEEEEECCCCcc-ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc------
Confidence 999999999976420 011123345678999999999999975 38999999999999998754332221000
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEcc-CCcEEEEeecCCceEeeeecccCCC
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDAR-TRELLKVFNIDGQIENRVDMSLLPD 365 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~-tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (842)
..+| ...+..+...+ ++..+++++ |++|++||++ +++++.++.+|...++.
T Consensus 201 --------~~~h----------~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~-------- 254 (380)
T 3iz6_a 201 --------PSGH----------TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS-------- 254 (380)
T ss_dssp --------SSSC----------CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCE--------
T ss_pred --------CCCC----------ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEE--------
Confidence 0011 44677777755 566777776 6899999997 45666777666543333
Q ss_pred cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cCc----cc-------cCCCceEEEEECCCCc
Q 003171 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG----FG-------DDNRRTEALTTSIDGM 432 (842)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~----~~-------~~~~~v~al~~s~dg~ 432 (842)
+.|.+++...++|..|+..++|. .+. +. .+...|.+++|+|+|.
T Consensus 255 -----------------------v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 311 (380)
T 3iz6_a 255 -----------------------VKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR 311 (380)
T ss_dssp -----------------------EEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS
T ss_pred -----------------------EEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC
Confidence 33444444455666666555554 111 11 1223478999999998
Q ss_pred -EEEEeCCCeEEEEcC-CCCeeeee----ecCCccEEEEE--ecCCEEEEEecCcEEEEEeCCC
Q 003171 433 -IWTGGANGLLLQWDP-NGNRLQDF----QYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEG 488 (842)
Q Consensus 433 -l~Sgs~DgtIrlWD~-~g~~l~~l----~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~g 488 (842)
|++|+.||+|++||. .++++..+ .+|...|++++ ++|++|++|+.|++|+|||+.+
T Consensus 312 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 312 LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 789999999999999 78887776 68999999986 4799999999999999999874
No 71
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.95 E-value=5.4e-26 Score=266.83 Aligned_cols=305 Identities=16% Similarity=0.148 Sum_probs=226.2
Q ss_pred cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCC-eEEEEEcC--CCCEEEEEeCCCcEEE
Q 003171 141 TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSS-VMCMVGDE--ASGVVWSGHRDGRIMC 217 (842)
Q Consensus 141 ~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-V~~la~dp--dg~~LaSGs~DGtIrl 217 (842)
+++.|.++.++.|+|||+++..... ........| ..+ |.|++|+| ++++|++|+.||+|++
T Consensus 29 dg~~l~~~~~~~v~v~~~~~~~~~~---------------~~~~~~~~h-~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 29 TTNAIAYPCGKSAFVRCLDDGDSKV---------------PPVVQFTGH-GSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp TTTEEEEEETTEEEEEECCSSCCSS---------------CSEEEECTT-TTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CCCEEEEecCCeEEEEECCCCCCcc---------------ccceEEecC-CCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 4556777779999999998641110 000111123 778 99999999 9999999999999999
Q ss_pred EECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCC----CcEEEEeCCCccceeecCCCceeeeEEEEee
Q 003171 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG----GGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (842)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D----gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~ 292 (842)
||+.++.............+.+|.++|++++|+|+|+ |++++.| +.|++||. ......+
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~~~~~~-------------- 156 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GNSLGEV-------------- 156 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CCEEEEC--------------
T ss_pred EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CCcceee--------------
Confidence 9996430000000145667889999999999999998 7888887 68888884 2221111
Q ss_pred ceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccCCcEEEEeecCCc---eEeeeecccCCCcc
Q 003171 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQ---IENRVDMSLLPDFA 367 (842)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~---~~~~~~~s~~~~~~ 367 (842)
.+| ...+.++++.+++. .+++++ +++|++||+.+++++..+..|.. ....
T Consensus 157 -----~~~----------~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~---------- 211 (615)
T 1pgu_A 157 -----SGH----------SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD---------- 211 (615)
T ss_dssp -----CSC----------SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE----------
T ss_pred -----ecC----------CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEE----------
Confidence 112 44677888888776 677666 67999999999999888876544 2222
Q ss_pred cccceEEEEEecCCCCccceeeeEeec-CcceEEecCCcEEEEee--cC----cc-c---cCCCceEEEEECCCCc-EEE
Q 003171 368 MEDEFKTKIVTSSKKDKAQSSFGFFQR-SRNAIMGAADAVRRVAA--KG----GF-G---DDNRRTEALTTSIDGM-IWT 435 (842)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~-~~~~~~g~~~~v~~v~~--~g----~~-~---~~~~~v~al~~s~dg~-l~S 435 (842)
+.|.++ +...+++..++..+++. .+ .+ . .|...|.+++++ ++. +++
T Consensus 212 ---------------------~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~ 269 (615)
T 1pgu_A 212 ---------------------VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFAT 269 (615)
T ss_dssp ---------------------EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEE
T ss_pred ---------------------EEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEE
Confidence 344444 44455566665555553 11 23 3 677889999999 776 899
Q ss_pred EeCCCeEEEEcC-CCCeeeeeecC----CccEEEEE-ecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEeCC
Q 003171 436 GGANGLLLQWDP-NGNRLQDFQYL----PFAVQCLC-TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGA 508 (842)
Q Consensus 436 gs~DgtIrlWD~-~g~~l~~l~~H----~~~V~sls-~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg 508 (842)
++.|++|++||+ +++++..+..| ...+.++. ++++++++|+.|+.|++||+. ++++..+.+|.+.|.++++ +
T Consensus 270 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~ 348 (615)
T 1pgu_A 270 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-N 348 (615)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-T
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-c
Confidence 999999999999 68899888876 35666664 489999999999999999998 7788999999999999999 8
Q ss_pred CEEEEEcCCCCeeecccc
Q 003171 509 GYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 509 ~~l~S~S~DgtIrvWd~~ 526 (842)
. +++++.|+.|++|++.
T Consensus 349 ~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 349 P-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp T-TEEEETTSCEEETTTT
T ss_pred C-cEEECCCCeEEEEEch
Confidence 8 9999999999999975
No 72
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=257.23 Aligned_cols=275 Identities=14% Similarity=0.114 Sum_probs=194.5
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-------------cccCCcEEEEEEec-CCC-
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-------------QAHRGPVLSLCISS-YGD- 254 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l-------------~gH~~~V~slafs~-dG~- 254 (842)
.++|.|++|+| ++++|++|+.||+|++||+.++. ....+ .+|.++|++++|+| ++.
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS--------RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS--------SSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc--------ccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 78999999999 99999999999999999999862 22111 36999999999999 554
Q ss_pred EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC---CCCEEEEeC-
Q 003171 255 LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH---SRAKVWSAG- 330 (842)
Q Consensus 255 L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~---~~~~v~s~s- 330 (842)
|++|+.|++|++||+.+++....+.. ...+..+...+ ++..+++++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 164 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFNF------------------------------EETVYSHHMSPVSTKHCLVAVGTR 164 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEEC------------------------------SSCEEEEEECSSCSSCCEEEEEES
T ss_pred EEEEeCCCeEEEeeCCCCccceeccC------------------------------CCceeeeEeecCCCCCcEEEEEcC
Confidence 88999999999999977543221110 12334444443 333566655
Q ss_pred CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEe
Q 003171 331 FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (842)
Q Consensus 331 ~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~ 410 (842)
++.|++||+.+++++..+..|...+..+.+++.... ..+++..++..+++
T Consensus 165 ~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------------------------ll~~~~~dg~i~i~ 214 (408)
T 4a11_B 165 GPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY------------------------------ILATASADSRVKLW 214 (408)
T ss_dssp SSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTT------------------------------EEEEEETTSCEEEE
T ss_pred CCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCc------------------------------EEEEEcCCCcEEEE
Confidence 578999999999988888766554444444332221 12334444433333
Q ss_pred ec----------------------CccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCc-----c
Q 003171 411 AK----------------------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-----A 461 (842)
Q Consensus 411 ~~----------------------g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~-----~ 461 (842)
.. ..+..|...|.+++++|++. |++|+.||.|++||+ +++.+..+.++.. .
T Consensus 215 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 294 (408)
T 4a11_B 215 DVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKG 294 (408)
T ss_dssp ETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSC
T ss_pred ECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccccc
Confidence 20 11235677899999999997 899999999999999 6766555543221 1
Q ss_pred E-EEEEe-cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCCCcc
Q 003171 462 V-QCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDS 533 (842)
Q Consensus 462 V-~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~~d~ 533 (842)
+ ..+.. .+..+++++.|+.|++||+. ++++..+.+|.+.|.++++ ++++|++++.||.|++|++.+..++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 295 LKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp CCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred ceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 1 12222 35577777889999999987 7889999999999999884 788999999999999999988765543
No 73
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.95 E-value=1.6e-25 Score=243.81 Aligned_cols=269 Identities=13% Similarity=0.141 Sum_probs=188.3
Q ss_pred eeEEEEecC---CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCe-eeeeecCCCeEEEEEcCCCCEEEE
Q 003171 134 FLRTIVCTE---EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPF-KESVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~~---~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~V~~la~dpdg~~LaS 208 (842)
.+.+|+... +.|.+ +.|++|++||+....... ..+. ....| ..+|.+++|+|++++|+|
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~---------------~~~~~~~~~h-~~~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF---------------GVPVRSFKGH-SHIVQDCTLTADGAYALS 82 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE---------------EEEEEEEECC-SSCEEEEEECTTSSEEEE
T ss_pred eEEEEEccCCCccEEEEecCCccEEEecCCCCCccc---------------cccceEEeCC-cccEEEEEECCCCCEEEE
Confidence 466666642 34554 569999999985321100 0011 11223 789999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeE
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
|+.|++||+||+.++ +....+.+|.+.|.+++|+|++. |+|||.|++||+||+... ....+.
T Consensus 83 ~s~D~~v~~wd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~-------- 145 (319)
T 3frx_A 83 ASWDKTLRLWDVATG--------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLL-------- 145 (319)
T ss_dssp EETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEEC--------
T ss_pred EeCCCEEEEEECCCC--------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEe--------
Confidence 999999999999997 67788999999999999999998 789999999999998542 111111
Q ss_pred EEEeeceeecccceeccceeeeecCCEEEEEEcC------CCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeec
Q 003171 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH------SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~------~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (842)
+| ...+..+.+.+ ++..+++++ +++|++||+.++++...+.+|...+..+
T Consensus 146 -----------~h----------~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~-- 202 (319)
T 3frx_A 146 -----------GH----------NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL-- 202 (319)
T ss_dssp -----------CC----------SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEE--
T ss_pred -----------cc----------CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEE--
Confidence 11 22344444433 234566665 6899999999999888877665543333
Q ss_pred ccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec--Ccc---ccCCCceEEEEECCCCcEEE
Q 003171 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GGF---GDDNRRTEALTTSIDGMIWT 435 (842)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g~~---~~~~~~v~al~~s~dg~l~S 435 (842)
.|.+++...+++..++..++|.. +.. ......|.+++|+|++.+++
T Consensus 203 -----------------------------~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la 253 (319)
T 3frx_A 203 -----------------------------TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 253 (319)
T ss_dssp -----------------------------EECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEE
T ss_pred -----------------------------EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEE
Confidence 34444445566666666666641 111 12346789999999999554
Q ss_pred EeCCCeEEEEcCC-CCeeeeee--------cCCccEEEEE--ecCCEEEEEecCcEEEEEeCC
Q 003171 436 GGANGLLLQWDPN-GNRLQDFQ--------YLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 436 gs~DgtIrlWD~~-g~~l~~l~--------~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (842)
++.++.+++|+++ +..+..+. .|...|.+++ +||++|++|+.|++|+|||+.
T Consensus 254 ~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 254 AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 4456669999994 55555543 3566788775 589999999999999999974
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.95 E-value=7.9e-26 Score=257.67 Aligned_cols=253 Identities=17% Similarity=0.240 Sum_probs=189.3
Q ss_pred CCC-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 191 VSS-VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~-V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
..+ +.|+.++ +++|+||+.||+|++||+.++ +.+..+.+|.++|++++|+|++.|+||+.||+|++||+
T Consensus 121 ~~~v~~~~~~~--~~~l~sgs~dg~i~vwd~~~~--------~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 121 MTSVITCLQFE--DNYVITGADDKMIRVYDSINK--------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 190 (464)
T ss_dssp SSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEEC--CCEEEEEcCCCcEEEEECCCC--------cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEEC
Confidence 444 5787775 589999999999999999987 67888999999999999999998899999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEc--CCCCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD--HSRAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~--~~~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
.+++....+. +| ...+.++.+. +++..+++++ +++|++||+.++....
T Consensus 191 ~~~~~~~~~~-------------------~h----------~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 191 KKGCCTHVFE-------------------GH----------NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp TTTEEEEEEC-------------------CC----------SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred CCCcEEEEEC-------------------CC----------CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 7754322221 11 3456666655 3556666666 6899999998876433
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
........ .. ... .+....... ..+.+|...+.++
T Consensus 242 ~~~~~~~~------------------~~-~~~-------------~~~~~~~~~------------~~~~~~~~~v~~~- 276 (464)
T 3v7d_B 242 DHGEEHDY------------------PL-VFH-------------TPEENPYFV------------GVLRGHMASVRTV- 276 (464)
T ss_dssp -----CCS------------------SE-EES-------------CGGGCTTEE------------EEECCCSSCEEEE-
T ss_pred cccccCCc------------------ce-Eee-------------ccCCCeEEE------------EEccCccceEEEE-
Confidence 22111000 00 000 000000000 0123444555555
Q ss_pred ECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCE
Q 003171 427 TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV 501 (842)
Q Consensus 427 ~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V 501 (842)
++++. +++|+.|++|++||+ +++++.++.+|...|.++++ +|++|++|+.||+|++||++ ++++.++.+|...|
T Consensus 277 -~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v 355 (464)
T 3v7d_B 277 -SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 355 (464)
T ss_dssp -EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred -cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcE
Confidence 44554 899999999999999 78999999999999999865 68899999999999999986 88999999999999
Q ss_pred EEEEeCCCEEEEEcCCCCeeeccccCC
Q 003171 502 IKMAVGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 502 ~sla~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
.+++++++++++++.|++|++||+..+
T Consensus 356 ~~~~~~~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 356 GLLRLSDKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp EEEEECSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEEcCCEEEEEeCCCcEEEEECCCC
Confidence 999999999999999999999998754
No 75
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=8.1e-26 Score=246.62 Aligned_cols=267 Identities=14% Similarity=0.161 Sum_probs=192.8
Q ss_pred CCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEA---SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpd---g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrv 266 (842)
.++|.|++|+|+ |++|++|+.||+|++||+.+.. ......+.+|.++|++++|+|+|+ |++|+.||+|++
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS------CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC------ceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 789999999999 6999999999999999998721 023367899999999999999998 789999999999
Q ss_pred EeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEE--cCCCCEEEEeC-CCcEEEEEccCCc
Q 003171 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS--DHSRAKVWSAG-FLSFALWDARTRE 343 (842)
Q Consensus 267 Wd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las--~~~~~~v~s~s-~~tI~lWD~~tg~ 343 (842)
||+.+.+... .. + +...+.++.. .+++..+++++ +++|++||+.+++
T Consensus 113 wd~~~~~~~~-~~-------------------~----------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 113 WDLSSNQAIQ-IA-------------------Q----------HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EETTTTEEEE-EE-------------------E----------CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred EEcCCCCcee-ec-------------------c----------ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence 9997643211 00 0 1345777777 66777777766 6899999999999
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee-cC-------cc
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KG-------GF 415 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g-------~~ 415 (842)
++..+..+.... ...... ...+++..++...++. .. ..
T Consensus 163 ~~~~~~~~~~~~-~~~~~~---------------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 208 (368)
T 3mmy_A 163 PMMVLQLPERCY-CADVIY---------------------------------PMAVVATAERGLIVYQLENQPSEFRRIE 208 (368)
T ss_dssp CSEEEECSSCEE-EEEEET---------------------------------TEEEEEEGGGCEEEEECSSSCEEEEECC
T ss_pred EEEEEecCCCce-EEEecC---------------------------------CeeEEEeCCCcEEEEEeccccchhhhcc
Confidence 888877654321 111111 0111122222111111 00 00
Q ss_pred ccCCCceEEEEECCCC-----cEEEEeCCCeEEEEcC-CC---CeeeeeecCCc------------cEEEEEe--cCCEE
Q 003171 416 GDDNRRTEALTTSIDG-----MIWTGGANGLLLQWDP-NG---NRLQDFQYLPF------------AVQCLCT--FGSQI 472 (842)
Q Consensus 416 ~~~~~~v~al~~s~dg-----~l~Sgs~DgtIrlWD~-~g---~~l~~l~~H~~------------~V~sls~--dG~~L 472 (842)
......+..+.+.+++ .+++|+.||.|++||+ .+ +.+..+.+|.. +|+++++ +|++|
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 288 (368)
T 3mmy_A 209 SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTL 288 (368)
T ss_dssp CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCE
T ss_pred ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEE
Confidence 0112223333333222 1899999999999999 44 56778888876 7998865 78899
Q ss_pred EEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 473 WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 473 asGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
++|+.||.|+|||+. ++++..+.+|...|.++++ ++++|+++|.|+..+.|++..
T Consensus 289 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 289 ATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 999999999999997 7889999999999999985 788999999999888877544
No 76
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.6e-26 Score=249.96 Aligned_cols=239 Identities=12% Similarity=0.046 Sum_probs=182.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvW 267 (842)
..+|.|++|+|++++|++|+.||+|++|++..+. .+....+.+|.++|++|+|+++ ++ |++|+.||+|++|
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc------ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 7899999999999999999999999999997431 1556778999999999999977 66 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC--CCEEEEeC-CCcEEEEEccCCcE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
|+.++..... . .+.+| ...+.++++.++ +..+++++ +++|++||+.++..
T Consensus 85 d~~~~~~~~~--------~---------~~~~~----------~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 85 KEENGRWSQI--------A---------VHAVH----------SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp EEETTEEEEE--------E---------EECCC----------SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred EcCCCceeEe--------e---------eecCC----------CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence 9976431100 0 01111 446788888887 77777776 67999999987632
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
...+. +..|...|.+
T Consensus 138 ~~~~~-----------------------------------------------------------------~~~~~~~v~~ 152 (379)
T 3jrp_A 138 TSPII-----------------------------------------------------------------IDAHAIGVNS 152 (379)
T ss_dssp CCEEE-----------------------------------------------------------------EECCTTCEEE
T ss_pred eeeEE-----------------------------------------------------------------ecCCCCceEE
Confidence 11110 0112223444
Q ss_pred EEECC-------------CCc-EEEEeCCCeEEEEcC-CCC----eeeeeecCCccEEEEEe--c---CCEEEEEecCcE
Q 003171 425 LTTSI-------------DGM-IWTGGANGLLLQWDP-NGN----RLQDFQYLPFAVQCLCT--F---GSQIWVGYMNGI 480 (842)
Q Consensus 425 l~~s~-------------dg~-l~Sgs~DgtIrlWD~-~g~----~l~~l~~H~~~V~sls~--d---G~~LasGs~Dgt 480 (842)
++++| ++. +++|+.|++|++||+ .++ ++..+.+|...|.++++ + +++|++|+.||+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~ 232 (379)
T 3jrp_A 153 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 232 (379)
T ss_dssp EEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred EEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence 44554 555 899999999999999 453 55678899999999864 6 789999999999
Q ss_pred EEEEeCC-Cc-----ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 481 VQVLDLE-GN-----LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 481 IrlWD~~-g~-----~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
|+|||+. ++ .+.....|...|+++++ +++++++++.|+.|++|++..
T Consensus 233 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 233 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 9999986 32 23444569999999884 788999999999999999764
No 77
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=7.4e-26 Score=255.47 Aligned_cols=268 Identities=14% Similarity=0.142 Sum_probs=192.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc---CCCCCcceeEEecccC------------CcEEEEEEecCC--
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL---DSDDGFGEVLSWQAHR------------GPVLSLCISSYG-- 253 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~---~~~~~~~~~~~l~gH~------------~~V~slafs~dG-- 253 (842)
.++|.|++|+|+|++|++|+.||+|++|++.++.. .....++....+++|. ++|++|+|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 67999999999999999999999999999987520 0001122467789998 899999999997
Q ss_pred C-EEEeeCCCcEEEEeCCCccceee---cCCCce----------------eeeEEEEeec--eeecccceeccceeeeec
Q 003171 254 D-LWSGSEGGGIKIWPWEAIEKALS---LKPEER----------------HTAALIVERS--YIDLRSHLSVNGFSSILT 311 (842)
Q Consensus 254 ~-L~SgS~DgtIrvWd~~t~~~~l~---~~~~~~----------------~~~~l~~~~s--~~~l~~~~~~~~~~~~~s 311 (842)
. |++|+.|++|++|++.+...... +..+.. +......... .....+ +.
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------h~ 177 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA----------HT 177 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC----------CS
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC----------CC
Confidence 4 88999999999999965332111 000000 0000000000 000011 25
Q ss_pred CCEEEEEEcCCCCEEEEeCCCcEEEEEccC-CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeee
Q 003171 312 SDIKNLLSDHSRAKVWSAGFLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFG 390 (842)
Q Consensus 312 ~~v~~las~~~~~~v~s~s~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~ 390 (842)
..+.++++++++..++++.+++|++||+.+ ++++..+....
T Consensus 178 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~-------------------------------------- 219 (447)
T 3dw8_B 178 YHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKP-------------------------------------- 219 (447)
T ss_dssp SCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCC--------------------------------------
T ss_pred cceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeeccc--------------------------------------
Confidence 678889999999999998788999999984 33333221100
Q ss_pred EeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC-c-EEEEeCCCeEEEEcC-CCCe----eeeeecCCc---
Q 003171 391 FFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NGNR----LQDFQYLPF--- 460 (842)
Q Consensus 391 ~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~-l~Sgs~DgtIrlWD~-~g~~----l~~l~~H~~--- 460 (842)
..+..|...|.+++++|++ . +++|+.||+|++||+ ++++ ++.+.+|..
T Consensus 220 ----------------------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 277 (447)
T 3dw8_B 220 ----------------------ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSN 277 (447)
T ss_dssp ----------------------SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----
T ss_pred ----------------------ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccc
Confidence 0134566778899999997 4 899999999999999 6765 788888886
Q ss_pred ---------cEEEEEe--cCCEEEEEecCcEEEEEeCC--CcccccccccccCE-----------------EEEEeCCCE
Q 003171 461 ---------AVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPV-----------------IKMAVGAGY 510 (842)
Q Consensus 461 ---------~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V-----------------~sla~dg~~ 510 (842)
.|.++++ +|++|++|+. ++|+|||+. ++++.++.+|...+ .++.+++++
T Consensus 278 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~ 356 (447)
T 3dw8_B 278 RSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV 356 (447)
T ss_dssp CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE
T ss_pred cccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCE
Confidence 8999865 7899999998 999999985 67899999997533 233468899
Q ss_pred EEEEcCCCCeeeccccCCC
Q 003171 511 IFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 511 l~S~S~DgtIrvWd~~~~~ 529 (842)
|++++.|+.|++||+.+..
T Consensus 357 l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 357 VMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp EEEECSTTEEEEEETTTCC
T ss_pred EEEeccCCEEEEEEcCCCc
Confidence 9999999999999987643
No 78
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=1.9e-25 Score=253.46 Aligned_cols=229 Identities=18% Similarity=0.261 Sum_probs=185.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..+|.|+.+ ++++|++|+.||+|++||+.++ +....+.+|.++|++++| +++ |++|+.||+|++||+
T Consensus 133 ~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL--------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CCCEEEEEC--CSSEEEEEESSSCEEEEESSSC--------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred CCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC--------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence 567999887 6899999999999999999987 678889999999999999 555 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.+++....+.. | ...+.++.++ +..+++++ +++|++||+.+++.+...
T Consensus 201 ~~~~~~~~~~~-------------------h----------~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~ 249 (435)
T 1p22_A 201 NTGEMLNTLIH-------------------H----------CEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLR 249 (435)
T ss_dssp SSCCEEEEECC-------------------C----------CSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred CCCcEEEEEcC-------------------C----------CCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceee
Confidence 77543222211 1 3345666664 34666665 689999999876542110
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
. .+.+|...|.++.+
T Consensus 250 ~----------------------------------------------------------------~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 250 R----------------------------------------------------------------VLVGHRAAVNVVDF- 264 (435)
T ss_dssp E----------------------------------------------------------------EECCCSSCEEEEEE-
T ss_pred e----------------------------------------------------------------EecCCCCcEEEEEe-
Confidence 0 01123344555666
Q ss_pred CCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe
Q 003171 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV 506 (842)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~ 506 (842)
.+..+++|+.||+|++||+ +++++.++.+|...|.++.+++.+|++|+.||+|++||++ ++++.++.+|.+.|.++++
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 344 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe
Confidence 3345899999999999999 7899999999999999999999999999999999999997 8899999999999999999
Q ss_pred CCCEEEEEcCCCCeeeccccC
Q 003171 507 GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 507 dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+++++++++.||+|++||+..
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHH
T ss_pred cCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999999754
No 79
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.94 E-value=1e-25 Score=271.51 Aligned_cols=241 Identities=20% Similarity=0.223 Sum_probs=187.2
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
..+|.|++++|++ ++|+||+.||+||+|++.... .........+.+|...|++++|+|+|+ |+|||.|++|||||
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~---~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDD---KAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCST---TCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCC---cccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 8899999999865 799999999999999997641 011133567899999999999999998 78999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
+.++.....+ .+| ...|.++++++++..+++++ |++|++||....... .
T Consensus 459 ~~~~~~~~~~-------------------~~h----------~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~-~ 508 (694)
T 3dm0_A 459 LAAGVSTRRF-------------------VGH----------TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY-T 508 (694)
T ss_dssp TTTTEEEEEE-------------------ECC----------SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-E
T ss_pred CCCCcceeEE-------------------eCC----------CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce-e
Confidence 9765322211 122 45688899998888888876 689999997543221 1
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
+. . ...+|...|.++++
T Consensus 509 ~~-----------------------------~----------------------------------~~~~h~~~v~~~~~ 525 (694)
T 3dm0_A 509 IS-----------------------------E----------------------------------GGEGHRDWVSCVRF 525 (694)
T ss_dssp EC-----------------------------S----------------------------------STTSCSSCEEEEEE
T ss_pred ec-----------------------------c----------------------------------CCCCCCCcEEEEEE
Confidence 10 0 01234556778889
Q ss_pred CCCC---cEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccC
Q 003171 428 SIDG---MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (842)
Q Consensus 428 s~dg---~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (842)
+|++ .+++|+.|++|++||+ +++++.++.+|...|+++++ +|++|++|+.||+|+|||+. ++++..+..| ..
T Consensus 526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~ 604 (694)
T 3dm0_A 526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SV 604 (694)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SC
T ss_pred eCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-Cc
Confidence 9886 4899999999999999 68899999999999999865 78999999999999999987 7777777654 57
Q ss_pred EEEEEe--CCCEEEEEcCCCCeeeccccCCC
Q 003171 501 VIKMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 501 V~sla~--dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
|.++++ ++..+ +++.|++|++||+.+..
T Consensus 605 v~~~~~sp~~~~l-~~~~~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 605 IHALCFSPNRYWL-CAATEHGIKIWDLESKS 634 (694)
T ss_dssp EEEEEECSSSSEE-EEEETTEEEEEETTTTE
T ss_pred EEEEEEcCCCcEE-EEEcCCCEEEEECCCCC
Confidence 888885 44444 45567789999987643
No 80
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.94 E-value=3.4e-26 Score=256.34 Aligned_cols=290 Identities=12% Similarity=0.126 Sum_probs=202.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
.+.+++|+|++++|++|+.||+|++||+.++ +....+.+| ..+...+|+++|+ |++|+.|++|++||+.+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIR--------DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSE--------ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEeccc--------ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 4557899999999999999999999999886 334445566 4556668899997 78999999999999876
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeec
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (842)
......+ .+| ...+.++++++++..+++++ +++|++||+.+++++..+.+
T Consensus 129 ~~~~~~~-------------------~~h----------~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 179 (420)
T 3vl1_A 129 NLQREID-------------------QAH----------VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG 179 (420)
T ss_dssp CEEEEET-------------------TSS----------SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC
T ss_pred cceeeec-------------------ccc----------cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC
Confidence 4322111 112 45688899998888888877 57899999999999888887
Q ss_pred CCceEeeeecccCCCccc--ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee-----cCccccCCCceE
Q 003171 351 DGQIENRVDMSLLPDFAM--EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-----KGGFGDDNRRTE 423 (842)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~--~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-----~g~~~~~~~~v~ 423 (842)
|...+..+.+++.....+ ..+..+++|.... .+.. ..... ..++...+..+.. ......+...+.
T Consensus 180 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~---~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~ 251 (420)
T 3vl1_A 180 HRATVTDIAIIDRGRNVLSASLDGTIRLWECGT-GTTI---HTFNR----KENPHDGVNSIALFVGTDRQLHEISTSKKN 251 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEE---EEECB----TTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC-Ccee---EEeec----CCCCCCCccEEEEecCCcceeeecccCccc
Confidence 776656666655432211 1111122222110 0000 00000 0011122222211 001112345566
Q ss_pred EEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeee-cCCccEEEEEe--cCC-EEEEEecCcEEEEEeCC-Cc-cccccc
Q 003171 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ-YLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLE-GN-LLGGWV 495 (842)
Q Consensus 424 al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~-~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~-g~-~i~~l~ 495 (842)
+++++|+|. +++|+.||+|++||+ +++.+..+. .|...|.++++ +|+ +|++|+.||+|++||++ ++ ++..+.
T Consensus 252 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 331 (420)
T 3vl1_A 252 NLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL 331 (420)
T ss_dssp TTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred ceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh
Confidence 677899997 789999999999999 677666654 58899999875 577 99999999999999997 43 477887
Q ss_pred c-cccCEEEEE-eCCCEEEEEcCCCCeeeccccCC
Q 003171 496 A-HSSPVIKMA-VGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 496 g-H~~~V~sla-~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
+ |...|.++. .+++++++++.|++|++|++..+
T Consensus 332 ~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 332 INEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred ccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence 7 677888887 47889999999999999998763
No 81
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.3e-26 Score=256.77 Aligned_cols=277 Identities=13% Similarity=0.089 Sum_probs=205.1
Q ss_pred CCeEEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee
Q 003171 192 SSVMCMVGDEASG-VVWSG----------HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (842)
Q Consensus 192 ~~V~~la~dpdg~-~LaSG----------s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS 259 (842)
..|.|++|+|+++ +|++| +.||+|++|++.++.. .......+|...|++++|+|+|+ |++|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 86 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS------EKPIASLQVDSKFNDLDWSHNNKIIAGAL 86 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG------CSCSCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC------CcEEEEEecCCceEEEEECCCCCeEEEEc
Confidence 3688999999987 99999 8999999999988620 01222346899999999999997 88999
Q ss_pred CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-CCEEEEeC-CCcEEEE
Q 003171 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALW 337 (842)
Q Consensus 260 ~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s-~~tI~lW 337 (842)
.|++|++|++.+..... .... .+.+| ...+.+++++++ +..+++++ +++|++|
T Consensus 87 ~dg~v~vw~~~~~~~~~------~~~~---------~~~~h----------~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAI------NSMA---------RFSNH----------SSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp SSSCEEEECCSSTTSCC------CEEE---------ECCCS----------SSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred cCCeEEEeecccccccc------cchh---------hccCC----------ccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 99999999997621000 0000 01112 446777888876 67787776 6799999
Q ss_pred EccCCc------EEEEe---ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeec-CcceEEecCCcEE
Q 003171 338 DARTRE------LLKVF---NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR-SRNAIMGAADAVR 407 (842)
Q Consensus 338 D~~tg~------~l~~l---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~-~~~~~~g~~~~v~ 407 (842)
|+.+++ ....+ ..+ ......+.|.++ +...+++..++..
T Consensus 142 d~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~v~~~~~~~~~~~~l~~~~~dg~v 190 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLTPGQSMSS-------------------------------VDEVISLAWNQSLAHVFASAGSSNFA 190 (416)
T ss_dssp BTTTTSSCTTTCCCBCCCCSCCS-------------------------------SCCCCEEEECSSCTTEEEEESSSSCE
T ss_pred ECCCCccccccccccccccccCC-------------------------------CCCeeEEEeCCCCCcEEEEEcCCCCE
Confidence 999876 21111 111 111223455554 3445666666655
Q ss_pred EEee--cC----ccccC------CCceEEEEECCCC--cEEEEeCCC---eEEEEcC-CC-Ceeeeee-cCCccEEEEEe
Q 003171 408 RVAA--KG----GFGDD------NRRTEALTTSIDG--MIWTGGANG---LLLQWDP-NG-NRLQDFQ-YLPFAVQCLCT 467 (842)
Q Consensus 408 ~v~~--~g----~~~~~------~~~v~al~~s~dg--~l~Sgs~Dg---tIrlWD~-~g-~~l~~l~-~H~~~V~sls~ 467 (842)
+++. .+ .+..+ ...+.+++++|++ .+++++.|+ +|++||+ ++ +++..+. +|...|+++++
T Consensus 191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~ 270 (416)
T 2pm9_A 191 SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDW 270 (416)
T ss_dssp EEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEE
T ss_pred EEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEe
Confidence 5554 11 12222 6789999999997 388999998 9999999 54 6788888 99999999875
Q ss_pred ---cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CC-CEEEEEcCCCCeeeccccCCCC
Q 003171 468 ---FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GA-GYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 468 ---dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg-~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
++++|++|+.|++|++||++ ++++..+.+|.+.|.++++ ++ ..+++++.|++|++|++....+
T Consensus 271 s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 271 CHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp CSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred CCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 67899999999999999987 7889999999999999985 55 7899999999999999876543
No 82
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.94 E-value=1.3e-25 Score=243.74 Aligned_cols=267 Identities=10% Similarity=0.040 Sum_probs=201.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (842)
..+|.|++|+|++++|++|+.||+|++|++.++. .......+.+|..+|++++|+|+++ |++|+.||+|++||
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA-----KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT-----TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC-----ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 7799999999999999999999999999998751 1113556679999999999999998 68999999999999
Q ss_pred C-CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccC-----
Q 003171 269 W-EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART----- 341 (842)
Q Consensus 269 ~-~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~t----- 341 (842)
+ .+... ..+ .+. .+...+.+++..+ +..+++++ +++|++||+.+
T Consensus 86 ~~~~~~~-~~~-------------------~~~--------~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 86 LIGSPSF-QAL-------------------TNN--------EANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp SSSSSSE-EEC-------------------BSC--------CCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC
T ss_pred eccCCce-Eec-------------------ccc--------CCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc
Confidence 9 76432 111 110 0144677888887 77777766 67999999987
Q ss_pred ----CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec---Cc
Q 003171 342 ----RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---GG 414 (842)
Q Consensus 342 ----g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~---g~ 414 (842)
++++.++. +..... .+.+.++. .+++..++..+++.. +.
T Consensus 137 ~~~~~~~~~~~~-~~~~v~-------------------------------~~~~~~~~--l~~~~~d~~i~i~d~~~~~~ 182 (342)
T 1yfq_A 137 IAVKNLNSNNTK-VKNKIF-------------------------------TMDTNSSR--LIVGMNNSQVQWFRLPLCED 182 (342)
T ss_dssp EEEEESCSSSSS-SCCCEE-------------------------------EEEECSSE--EEEEESTTEEEEEESSCCTT
T ss_pred ccccCCeeeEEe-eCCceE-------------------------------EEEecCCc--EEEEeCCCeEEEEECCcccc
Confidence 55433333 111111 12222222 455555555554431 11
Q ss_pred ------cccCCCceEEEEECC-CCc-EEEEeCCCeEEEEcC-CC------CeeeeeecCCc---------cEEEEEe--c
Q 003171 415 ------FGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NG------NRLQDFQYLPF---------AVQCLCT--F 468 (842)
Q Consensus 415 ------~~~~~~~v~al~~s~-dg~-l~Sgs~DgtIrlWD~-~g------~~l~~l~~H~~---------~V~sls~--d 468 (842)
...+...+.+++++| ++. +++|+.||.|++||. .+ +.+..+.+|.. .|.++++ +
T Consensus 183 ~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 262 (342)
T 1yfq_A 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262 (342)
T ss_dssp CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT
T ss_pred ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCC
Confidence 113556789999999 876 899999999999999 44 77888888865 9999865 7
Q ss_pred CCEEEEEecCcEEEEEeCC-Cccccccccc-ccCEEEEEeCCCEEEEEcCCCC-eeeccc
Q 003171 469 GSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-SSPVIKMAVGAGYIFTLANHGG-IRGWNV 525 (842)
Q Consensus 469 G~~LasGs~DgtIrlWD~~-g~~i~~l~gH-~~~V~sla~dg~~l~S~S~Dgt-IrvWd~ 525 (842)
|++|++|+.||+|++||+. ++++..+.+| .+.|.+++++++++++++.|++ .+.|..
T Consensus 263 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp TCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred CCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCcccccccc
Confidence 8999999999999999997 7889999999 9999999999999999999999 777764
No 83
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.94 E-value=4.4e-25 Score=238.07 Aligned_cols=237 Identities=19% Similarity=0.286 Sum_probs=187.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec--ccCCcEEEEEEecCCC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--AHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~--gH~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (842)
..+|.|++++|++++|++|+ ||+|++|++.++. .......+. +|..+|++++|+|+|+ |++|+.|++|++|
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG-----NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT-----CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC-----ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 78999999999999999999 9999999998752 112233333 8999999999999998 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
|+.+.+..... . +.++ ...+.+++..+++..+++++ ++.|++||+.+++++.
T Consensus 125 d~~~~~~~~~~--------~---------~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~ 177 (337)
T 1gxr_A 125 DLAAPTPRIKA--------E---------LTSS----------APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp ECCCC--EEEE--------E---------EECS----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ECCCCCcceee--------e---------cccC----------CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Confidence 99764321100 0 0111 34577888888888888776 5789999999887655
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
.+.. |...+.+++
T Consensus 178 ~~~~-------------------------------------------------------------------~~~~i~~~~ 190 (337)
T 1gxr_A 178 QFQG-------------------------------------------------------------------HTDGASCID 190 (337)
T ss_dssp EECC-------------------------------------------------------------------CSSCEEEEE
T ss_pred eeec-------------------------------------------------------------------ccCceEEEE
Confidence 4422 223456778
Q ss_pred ECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCcccccccccccCEE
Q 003171 427 TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVI 502 (842)
Q Consensus 427 ~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~ 502 (842)
++|++. +++++.|+.|++||+ +++++..+ .|...|.++++ +|++|++|+.|+.|++||+.......+.+|...|.
T Consensus 191 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~ 269 (337)
T 1gxr_A 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL 269 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEE
T ss_pred ECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCcccee
Confidence 888886 889999999999999 67777766 47788998864 78999999999999999998655567889999999
Q ss_pred EEEe--CCCEEEEEcCCCCeeeccccCC
Q 003171 503 KMAV--GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 503 sla~--dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
++++ +++++++++.|+.|++|++.+.
T Consensus 270 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 297 (337)
T 1gxr_A 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEEECCCCCEEEEecCCCcEEEEECCCC
Confidence 9985 6889999999999999998764
No 84
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=6.2e-26 Score=252.50 Aligned_cols=278 Identities=12% Similarity=0.081 Sum_probs=182.4
Q ss_pred cCceeEEEEecCC-EEEE-ec--------CCCEEEEeCCCCccccccccccccCCCCCCCCCCeee-eeec-CCCeEEEE
Q 003171 131 IGCFLRTIVCTEE-QLWA-GG--------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE-SVKG-VSSVMCMV 198 (842)
Q Consensus 131 ~~~~~~~l~~~~~-~l~~-~~--------D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g-~~~V~~la 198 (842)
.|.+++++++..+ ++++ |. ++.|++|++........ .......+ .+.+ ...|.|++
T Consensus 13 ~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~------------~~~~~~~~~~l~~~~~~v~s~~ 80 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK------------EQFHILSEFALEDNDDSPTAID 80 (365)
T ss_dssp CSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHH------------HHEEEEEEEECCTTSCCCCEEE
T ss_pred CCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCccee------------eeeeeeeEEEccCCCCceEEEE
Confidence 4667888887644 5554 32 33599999864322110 00000000 1111 45677877
Q ss_pred EcCCCCEEEEE-----------eCCCcEEEEECCCCccCCCCCcceeEE-----ecccCCcEEEEEEecCCC-EE--Eee
Q 003171 199 GDEASGVVWSG-----------HRDGRIMCWKMNARLLDSDDGFGEVLS-----WQAHRGPVLSLCISSYGD-LW--SGS 259 (842)
Q Consensus 199 ~dpdg~~LaSG-----------s~DGtIrlWdl~~g~~~~~~~~~~~~~-----l~gH~~~V~slafs~dG~-L~--SgS 259 (842)
++. +.+++| +.|+++|+|++.+.. ...+.... ...|...|.+|+|||||+ |+ ||+
T Consensus 81 ~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~ 154 (365)
T 4h5i_A 81 ASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVN----DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSK 154 (365)
T ss_dssp EET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTT----TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESC
T ss_pred eCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCC----ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECC
Confidence 653 455554 567899999987652 00111111 123456799999999998 44 667
Q ss_pred CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEc
Q 003171 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA 339 (842)
Q Consensus 260 ~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~ 339 (842)
.|++|||||+.+++....+. +...|..+++++++..+++++++++++|+.
T Consensus 155 ~d~~i~iwd~~~~~~~~~~~------------------------------~~~~V~~v~fspdg~~l~s~s~~~~~~~~~ 204 (365)
T 4h5i_A 155 VPAIMRIIDPSDLTEKFEIE------------------------------TRGEVKDLHFSTDGKVVAYITGSSLEVIST 204 (365)
T ss_dssp SSCEEEEEETTTTEEEEEEE------------------------------CSSCCCEEEECTTSSEEEEECSSCEEEEET
T ss_pred CCCEEEEeECCCCcEEEEeC------------------------------CCCceEEEEEccCCceEEeccceeEEEEEe
Confidence 89999999997754332211 134577899999999999999989999999
Q ss_pred cCCcEEEEe--ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCc----EEEEee--
Q 003171 340 RTRELLKVF--NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA----VRRVAA-- 411 (842)
Q Consensus 340 ~tg~~l~~l--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~----v~~v~~-- 411 (842)
.+++.+... ..+......+.+ .+++...+.+..++ ..+.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~v~~v~f-------------------------------spdg~~l~~~s~d~~~~~~i~~~~~~ 253 (365)
T 4h5i_A 205 VTGSCIARKTDFDKNWSLSKINF-------------------------------IADDTVLIAASLKKGKGIVLTKISIK 253 (365)
T ss_dssp TTCCEEEEECCCCTTEEEEEEEE-------------------------------EETTEEEEEEEESSSCCEEEEEEEEE
T ss_pred ccCcceeeeecCCCCCCEEEEEE-------------------------------cCCCCEEEEEecCCcceeEEeecccc
Confidence 988875433 223333233333 33333333322221 111111
Q ss_pred --------cCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeee-ecCCccEEEEEe--cCCEEEEEecC
Q 003171 412 --------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLCT--FGSQIWVGYMN 478 (842)
Q Consensus 412 --------~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l-~~H~~~V~sls~--dG~~LasGs~D 478 (842)
...+..|...|.+++|+|||+ |++|+.|++|+|||+ ++++++++ .+|..+|+++++ ||++|++||.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D 333 (365)
T 4h5i_A 254 SGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAA 333 (365)
T ss_dssp TTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETT
T ss_pred cceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCC
Confidence 113456778899999999998 789999999999999 78999875 789999999864 89999999999
Q ss_pred cEEEEEeCC
Q 003171 479 GIVQVLDLE 487 (842)
Q Consensus 479 gtIrlWD~~ 487 (842)
++|||||+.
T Consensus 334 ~tvrvw~ip 342 (365)
T 4h5i_A 334 NTIHIIKLP 342 (365)
T ss_dssp SEEEEEECC
T ss_pred CeEEEEEcC
Confidence 999999985
No 85
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.94 E-value=2.2e-24 Score=262.89 Aligned_cols=271 Identities=15% Similarity=0.142 Sum_probs=213.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.+.|.|++|+|++++|++|+.||+|++||+.++ .....+.+|.++|++++|+|+|+ |++|+.||+|+|||+
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCC--------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 789999999999999999999999999999987 67888999999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCC-cEEEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR-ELLKV 347 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg-~~l~~ 347 (842)
.+++....+. +| ...+.++++++++..+++++ +++|++||+.++ .+...
T Consensus 85 ~~~~~~~~~~-------------------~~----------~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 135 (814)
T 3mkq_A 85 NTGEKVVDFE-------------------AH----------PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (814)
T ss_dssp TTCCEEEEEE-------------------CC----------SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred CCCcEEEEEe-------------------cC----------CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence 7754322221 11 45688889998888888877 579999999987 66666
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEee-cCcceEEecCCcEEEEeec--C----ccc-cCC
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAAK--G----GFG-DDN 419 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~-~~~~~~~g~~~~v~~v~~~--g----~~~-~~~ 419 (842)
+..|......+ .|.+ ++...+++..++..+++.. + .+. .+.
T Consensus 136 ~~~~~~~v~~~-------------------------------~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 184 (814)
T 3mkq_A 136 FEGHEHFVMCV-------------------------------AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184 (814)
T ss_dssp EECCSSCEEEE-------------------------------EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT
T ss_pred EcCCCCcEEEE-------------------------------EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC
Confidence 66655433222 2333 2334455566665555541 1 111 233
Q ss_pred CceEEEEECC--CCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Ccccc
Q 003171 420 RRTEALTTSI--DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLG 492 (842)
Q Consensus 420 ~~v~al~~s~--dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~ 492 (842)
..+..++++| ++. +++|+.||+|++||. +++++.++.+|...|.+++ ++|++|++|+.||+|++||+. ++++.
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 6788899998 776 899999999999999 7899999999999999886 478899999999999999997 78899
Q ss_pred cccccccCEEEEEe--CCCE-EEEEcCCCCeeeccccCCC
Q 003171 493 GWVAHSSPVIKMAV--GAGY-IFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 493 ~l~gH~~~V~sla~--dg~~-l~S~S~DgtIrvWd~~~~~ 529 (842)
.+..|...|+++++ ++.. ++..+.|+.+.+|++....
T Consensus 265 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 265 TLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp EECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred EeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 99999999999985 4442 3566668889999976543
No 86
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.7e-26 Score=264.18 Aligned_cols=236 Identities=13% Similarity=-0.029 Sum_probs=164.9
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC------CC-EEEeeCCCcEEEEeCCCc
Q 003171 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY------GD-LWSGSEGGGIKIWPWEAI 272 (842)
Q Consensus 200 dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d------G~-L~SgS~DgtIrvWd~~t~ 272 (842)
+|++++++||+.|++|+||++.++. .......++.+|.+.|++|+|+|+ +. |+|||.||+|||||+.+.
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~----~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~ 245 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTST----LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN 245 (524)
T ss_dssp ------------CEEEEEEEEETTT----CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCC
T ss_pred chhhhhhccCCCCceEEEEEccCCC----CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCC
Confidence 5677889999999999999998752 011112456788999999999997 34 789999999999999764
Q ss_pred ccee--ecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE-EEEe
Q 003171 273 EKAL--SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL-LKVF 348 (842)
Q Consensus 273 ~~~l--~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~-l~~l 348 (842)
.... ..... .....+.+| ...+.++++.+++ .|++++ |++|++||++++.. ..+
T Consensus 246 ~~~~~~~~~~~----------~p~~~l~~h----------~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~- 303 (524)
T 2j04_B 246 ATDVHVFKMCE----------KPSLTLSLA----------DSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFY- 303 (524)
T ss_dssp SSSSSEEECCC----------SCSEEECCT----------TTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEE-
T ss_pred ccccccceeec----------CceEEEEcC----------CCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEE-
Confidence 3110 00000 000112222 4567888887654 677766 68999999986531 111
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEE--E
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL--T 426 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al--~ 426 (842)
+..|...|.++ +
T Consensus 304 ------------------------------------------------------------------~~~H~~~V~sv~~~ 317 (524)
T 2j04_B 304 ------------------------------------------------------------------DQVHDSYILSVSTA 317 (524)
T ss_dssp ------------------------------------------------------------------EECSSSCEEEEEEE
T ss_pred ------------------------------------------------------------------eecccccEEEEEEE
Confidence 11344456666 5
Q ss_pred ECCCC-c-EEEEeCCCeEEEEcC-CCCeeeeeecCCc--cEEEE--EecCCEEEEEecCcEEEEEeCC-Ccccccccccc
Q 003171 427 TSIDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPF--AVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (842)
Q Consensus 427 ~s~dg-~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~--~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (842)
++++| + |+|||.|++|||||+ +++++.++.+|.. .|.++ +++|+.+++|+.|++|+|||++ +.++.++.+|.
T Consensus 318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~ 397 (524)
T 2j04_B 318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE 397 (524)
T ss_dssp CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS
T ss_pred cCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCC
Confidence 78887 5 799999999999999 7888888888764 46655 5578899999999999999987 67888899999
Q ss_pred cCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 499 SPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 499 ~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+.|++|++ +++.|+|||.|++|++||+..
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred CceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 99999984 788999999999999999643
No 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=3.3e-25 Score=241.95 Aligned_cols=239 Identities=14% Similarity=0.161 Sum_probs=188.1
Q ss_pred CCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc-----cCCcEEEEEEecC----CC-EE
Q 003171 191 VSSVMCMVGDEA----SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-----HRGPVLSLCISSY----GD-LW 256 (842)
Q Consensus 191 ~~~V~~la~dpd----g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g-----H~~~V~slafs~d----G~-L~ 256 (842)
.++|.|++|+|+ ...+++++.++.|++|++.++ +.+..+++ |.+.|++++|+|+ |. |+
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--------GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG--------GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC--------cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 789999999984 566777777789999999876 44445544 5688999999999 54 78
Q ss_pred EeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcE
Q 003171 257 SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSF 334 (842)
Q Consensus 257 SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI 334 (842)
+|+.||+|++||+.+++....+. +| ...+.++++.+ ++..+++++ +++|
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~-------------------~~----------~~~i~~~~~~~~~~~~l~s~~~dg~i 140 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYV-------------------GH----------GNAINELKFHPRDPNLLLSVSKDHAL 140 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEE-------------------SC----------CSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred EecCCCEEEEEEchhceEeeeec-------------------CC----------CCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99999999999997654322111 11 45688888888 778888877 6799
Q ss_pred EEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCc
Q 003171 335 ALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG 414 (842)
Q Consensus 335 ~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~ 414 (842)
++||+.+++.+..+..
T Consensus 141 ~iwd~~~~~~~~~~~~---------------------------------------------------------------- 156 (366)
T 3k26_A 141 RLWNIQTDTLVAIFGG---------------------------------------------------------------- 156 (366)
T ss_dssp EEEETTTTEEEEEECS----------------------------------------------------------------
T ss_pred EEEEeecCeEEEEecc----------------------------------------------------------------
Confidence 9999998876554311
Q ss_pred cccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeec----------------------------CCccEEE
Q 003171 415 FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY----------------------------LPFAVQC 464 (842)
Q Consensus 415 ~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~----------------------------H~~~V~s 464 (842)
+..|...|.+++++|++. +++|+.||+|++||+ +++++..+.. |...|.+
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 123345577888999886 889999999999999 5665555544 9999999
Q ss_pred EEecCCEEEEEecCcEEEEEeCC-Cc--------------ccccccccccCEEEEE--eC--CCEEEEEcCCCCeeeccc
Q 003171 465 LCTFGSQIWVGYMNGIVQVLDLE-GN--------------LLGGWVAHSSPVIKMA--VG--AGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 465 ls~dG~~LasGs~DgtIrlWD~~-g~--------------~i~~l~gH~~~V~sla--~d--g~~l~S~S~DgtIrvWd~ 525 (842)
++++|++|++|+.|+.|++||+. ++ ++..+.+|...|++++ ++ ++++++++.|+.|++||+
T Consensus 237 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~ 316 (366)
T 3k26_A 237 VRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL 316 (366)
T ss_dssp EEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred EEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence 99989999999999999999975 32 3677888999998876 57 899999999999999998
Q ss_pred cCCCC
Q 003171 526 TSPGP 530 (842)
Q Consensus 526 ~~~~~ 530 (842)
....+
T Consensus 317 ~~~~~ 321 (366)
T 3k26_A 317 EVEDP 321 (366)
T ss_dssp CSSSG
T ss_pred CCCCC
Confidence 76543
No 88
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.93 E-value=1.6e-23 Score=226.82 Aligned_cols=272 Identities=18% Similarity=0.203 Sum_probs=193.7
Q ss_pred ceeEEEEecC---CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCee-eeeecCCCeEEEEEcCCCCEEE
Q 003171 133 CFLRTIVCTE---EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK-ESVKGVSSVMCMVGDEASGVVW 207 (842)
Q Consensus 133 ~~~~~l~~~~---~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~V~~la~dpdg~~La 207 (842)
..+.+|+... +.|.+ |.|++|||||+.+...... .+.. ...| ..+|.|++|+|++++|+
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~---------------~~~~~l~~h-~~~V~~~~~s~dg~~l~ 102 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG---------------IPQRALRGH-SHFVSDVVISSDGQFAL 102 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE---------------EEEEEECCC-SSCEEEEEECTTSSEEE
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc---------------eeeEEEeCC-CCCEEEEEECCCCCEEE
Confidence 3577777752 24444 5799999999975432110 1111 1123 78999999999999999
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeee
Q 003171 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (842)
Q Consensus 208 SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~ 286 (842)
+|+.||.|++|+.... ........|...+..+.+++++. |++|+.|+.+++||..........
T Consensus 103 s~~~d~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~-------- 166 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTG--------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ-------- 166 (340)
T ss_dssp EEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC--------
T ss_pred EEcccccceEEeeccc--------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE--------
Confidence 9999999999999886 56667788899999999999987 899999999999998653221110
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEEcCCC--CEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccC
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR--AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~--~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (842)
+.++ ...+..+++...+ ..+++++ +++|++||+.+++++..+.+|...+..+.
T Consensus 167 ----------~~~~----------~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~---- 222 (340)
T 4aow_A 167 ----------DESH----------SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVT---- 222 (340)
T ss_dssp ----------SSSC----------SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE----
T ss_pred ----------eccc----------cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEE----
Confidence 0111 2345555554432 3445554 67999999999999888876654433333
Q ss_pred CCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec--Cc---cccCCCceEEEEECCCCcEEEEeC
Q 003171 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GG---FGDDNRRTEALTTSIDGMIWTGGA 438 (842)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g~---~~~~~~~v~al~~s~dg~l~Sgs~ 438 (842)
|.+++...++|..++..+++.. +. ...+...+.++.++|++.+++++.
T Consensus 223 ---------------------------~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 275 (340)
T 4aow_A 223 ---------------------------VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT 275 (340)
T ss_dssp ---------------------------ECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEE
T ss_pred ---------------------------ECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccC
Confidence 3333444455666666555541 11 112446788999999999999999
Q ss_pred CCeEEEEcCC-CCeeeeee---------cCCccEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 439 NGLLLQWDPN-GNRLQDFQ---------YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 439 DgtIrlWD~~-g~~l~~l~---------~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
|++|++||+. +.++..+. +|...|+++++ +|++|++|+.||+|+|||++
T Consensus 276 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 276 GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 9999999994 55555543 68899999864 78999999999999999986
No 89
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=2e-25 Score=250.58 Aligned_cols=256 Identities=9% Similarity=-0.031 Sum_probs=156.8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec--------CCC-EEEeeCCCcEE
Q 003171 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--------YGD-LWSGSEGGGIK 265 (842)
Q Consensus 195 ~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--------dG~-L~SgS~DgtIr 265 (842)
....+.+++.+|+||+.|++||+||..++.. ........+.||++.|++|+|+| ||+ |+|||.|++||
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~---~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITKNETI---ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEETTEE---EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECCCCcc---ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 3344455677899999999999999988620 00011234689999999999998 777 78999999999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccCCc
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRE 343 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~tg~ 343 (842)
|||+.+..+..... + ....+.++++.+.+. ++++++ +++|++||+++++
T Consensus 170 ~Wd~~~~~~~~~~~-------------------~----------~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~ 220 (393)
T 4gq1_A 170 IWRLTDEGPILAGY-------------------P----------LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL 220 (393)
T ss_dssp EEEEETTEEEEEEE-------------------E----------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred EEECCCCceeeeec-------------------C----------CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence 99986543222111 1 145677888887764 577766 6899999999988
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceE
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (842)
....+..+... ..... ++ ..... ... .....++...+.
T Consensus 221 ~~~~~~~~~~~------~~~~~-----------~s------------~~~~~--------~~~-----~~~~~~~~~~v~ 258 (393)
T 4gq1_A 221 SAEENSQTELV------KNPWL-----------LT------------LNTLP--------LVN-----TCHSSGIASSLA 258 (393)
T ss_dssp ----------C------SCCCS-----------EE------------EESGG--------GC-----------CCSSSCS
T ss_pred ccccccccCCc------ccceE-----------Ee------------ccccc--------cee-----eeecccccccce
Confidence 75544321110 00000 00 00000 000 001223455666
Q ss_pred EEEEC-CCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--------------------e--cCCEEEEEecC
Q 003171 424 ALTTS-IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--------------------T--FGSQIWVGYMN 478 (842)
Q Consensus 424 al~~s-~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--------------------~--dG~~LasGs~D 478 (842)
++.++ +||. +++++.|+++++||+ .++....+..|...+..+. + ++.++++|+.|
T Consensus 259 ~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D 338 (393)
T 4gq1_A 259 NVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH 338 (393)
T ss_dssp EEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT
T ss_pred eeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCC
Confidence 77764 7776 899999999999999 6777777766665554321 1 23478888999
Q ss_pred cEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 479 GIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 479 gtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
|+|+|||+. ++++..+.+|..+|.+|++ ||++|++++.|| +.+|.+
T Consensus 339 g~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 339 GLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 999999987 7788888899999999984 899999998765 656654
No 90
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.93 E-value=4.2e-24 Score=230.02 Aligned_cols=240 Identities=10% Similarity=0.134 Sum_probs=167.6
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC--CCEEEE
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd--g~~LaS 208 (842)
.+++++.+ ++.|.+ +.|++|+|||+.+.... + . .....| .++|.+++|+++ +++|+|
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~-~--------------~--~~l~gH-~~~V~~v~~s~~~~g~~l~s 72 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK-L--------------I--DTLTGH-EGPVWRVDWAHPKFGTILAS 72 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC-C--------------C--EEECCC-SSCEEEEEECCGGGCSEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE-E--------------E--EEEccc-cCCeEEEEecCCCcCCEEEE
Confidence 56677765 445655 56999999998642110 0 0 111234 789999999864 899999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
|+.||+||+||+.++. ...+..+.+|..+|++++|+|+ |. |++|+.|++|++||+.+......
T Consensus 73 ~s~D~~v~iWd~~~~~------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-------- 138 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-------- 138 (297)
T ss_dssp EETTTEEEEEEBSSSC------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC--------
T ss_pred EcCCCEEEEEEcCCCc------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee--------
Confidence 9999999999998752 1345678899999999999997 66 78999999999999965321100
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-------------CCEEEEeC-CCcEEEEEccCCcEEEEeecC
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-------------RAKVWSAG-FLSFALWDARTRELLKVFNID 351 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-------------~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~ 351 (842)
. .+.+| ...+.++++++. +..+++++ |++|+|||+.+++....+.
T Consensus 139 ~---------~~~~h----------~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~-- 197 (297)
T 2pm7_B 139 I---------IIDAH----------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-- 197 (297)
T ss_dssp E---------EEECC----------SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE--
T ss_pred e---------eeecc----------cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE--
Confidence 0 00111 223444555443 35677766 6899999987654100000
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg 431 (842)
..+.+|...|.+++|+|++
T Consensus 198 -------------------------------------------------------------~~l~~H~~~V~~v~~sp~~ 216 (297)
T 2pm7_B 198 -------------------------------------------------------------STLEGHSDWVRDVAWSPTV 216 (297)
T ss_dssp -------------------------------------------------------------EEECCCSSCEEEEEECCCC
T ss_pred -------------------------------------------------------------EEecCCCCceEEEEECCCC
Confidence 0123455678889999984
Q ss_pred ----cEEEEeCCCeEEEEcCC-CC---eeeee--ecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC
Q 003171 432 ----MIWTGGANGLLLQWDPN-GN---RLQDF--QYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 432 ----~l~Sgs~DgtIrlWD~~-g~---~l~~l--~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (842)
.|++|+.|++|++||++ +. ....+ ..|...|.+++ ++|++|++|+.|++|+||+..
T Consensus 217 ~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 48999999999999984 32 12233 46888999876 479999999999999999964
No 91
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.93 E-value=2.6e-24 Score=242.85 Aligned_cols=304 Identities=13% Similarity=0.102 Sum_probs=199.3
Q ss_pred CceeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec-C------------CCeE
Q 003171 132 GCFLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-V------------SSVM 195 (842)
Q Consensus 132 ~~~~~~l~~~~~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~------------~~V~ 195 (842)
...+.+++.+.+ .|.+ +.|+.|+|||+.+...... ... .+... ...+.+ . .+|.
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~--------~~~-~~~~~-~~~~~~h~~~~~~~~~~~~~~~V~ 97 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS--------HSR-GEYNV-YSTFQSHEPEFDYLKSLEIEEKIN 97 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C--------CCC-CCEEE-EEEEECCCCEEEGGGTEEECCCCC
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc--------ccc-cceeE-ecccccccccccccccccccCceE
Confidence 456778887644 5554 4699999999976432110 000 00000 111111 4 7899
Q ss_pred EEEEcCCC--CEEEEEeCCCcEEEEECCCCccC-------------------CCCCc------------ceeEE-ecccC
Q 003171 196 CMVGDEAS--GVVWSGHRDGRIMCWKMNARLLD-------------------SDDGF------------GEVLS-WQAHR 241 (842)
Q Consensus 196 ~la~dpdg--~~LaSGs~DGtIrlWdl~~g~~~-------------------~~~~~------------~~~~~-l~gH~ 241 (842)
+++|+|++ .+|++|+.||+|++|++.++... ....+ ..... ..+|.
T Consensus 98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 177 (447)
T 3dw8_B 98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT 177 (447)
T ss_dssp EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence 99999998 89999999999999998763100 00000 00112 36899
Q ss_pred CcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEc
Q 003171 242 GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (842)
Q Consensus 242 ~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~ 320 (842)
..|++++|+|+|+ |++| .|++|++||+.+....+.... .....+.+| ...+.+++++
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~-----------~~~~~~~~~----------~~~v~~~~~~ 235 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVD-----------IKPANMEEL----------TEVITAAEFH 235 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEE-----------CCCSSGGGC----------CCCEEEEEEC
T ss_pred cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeee-----------ccccccccc----------CcceEEEEEC
Confidence 9999999999998 6787 799999999974322221100 000001112 4568889998
Q ss_pred CCC-CEEEEeC-CCcEEEEEccCCcE----EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeec
Q 003171 321 HSR-AKVWSAG-FLSFALWDARTREL----LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394 (842)
Q Consensus 321 ~~~-~~v~s~s-~~tI~lWD~~tg~~----l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~ 394 (842)
+++ ..+++++ +++|++||+++++. +.++..+.... .
T Consensus 236 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------------------------~----------- 277 (447)
T 3dw8_B 236 PNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPS---------------------------N----------- 277 (447)
T ss_dssp SSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-------------------------------------------
T ss_pred CCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcc---------------------------c-----------
Confidence 887 7788776 67899999998875 34443221100 0
Q ss_pred CcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-C-CCeeeeeecCCccE---------
Q 003171 395 SRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAV--------- 462 (842)
Q Consensus 395 ~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~-g~~l~~l~~H~~~V--------- 462 (842)
...+.++...|.+++++|+|+ |++++. ++|++||+ . ++++.++.+|...+
T Consensus 278 -----------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 278 -----------------RSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp -----------------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred -----------------cccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence 001334556788999999998 677777 99999999 5 88999999886432
Q ss_pred --------EEEEecCCEEEEEecCcEEEEEeCCCcccccccc---------------------------------cccCE
Q 003171 463 --------QCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVA---------------------------------HSSPV 501 (842)
Q Consensus 463 --------~sls~dG~~LasGs~DgtIrlWD~~g~~i~~l~g---------------------------------H~~~V 501 (842)
.+++++|++|++|+.||+|+|||+.+.....+.+ +...|
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 419 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKI 419 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCC
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCce
Confidence 3556789999999999999999987332223333 34567
Q ss_pred EEEE--eCCCEEEEEcCCCCeeecc
Q 003171 502 IKMA--VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 502 ~sla--~dg~~l~S~S~DgtIrvWd 524 (842)
.+++ +++..|++++.|+ +.+|.
T Consensus 420 ~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 420 LHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp CEEEECSSSSEEEEECSSC-EEEEE
T ss_pred eEEEECCCCCEEEEEecce-eeeec
Confidence 7787 4778898888775 77776
No 92
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.93 E-value=2.2e-24 Score=241.71 Aligned_cols=270 Identities=14% Similarity=0.096 Sum_probs=191.3
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~ 226 (842)
+.|+.|+|||+.+..... .....+ ..| .++|.|++|+| ++++|++|+.||+|++|++.++..
T Consensus 54 ~~~g~i~v~~~~~~~~~~-------------~~~~~~--~~h-~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~- 116 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVD-------------KNVPLV--CGH-TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL- 116 (402)
T ss_dssp SSSCCEEEEETTCCEECC-------------TTCCCB--CCC-SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC-
T ss_pred cCCCEEEEEECccCCCCC-------------CCCceE--ecC-CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC-
Confidence 568999999996532110 001111 123 78999999999 999999999999999999987520
Q ss_pred CCCCcceeEEecccCCcEEEEEEecCC-C-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceecc
Q 003171 227 SDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (842)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~ 304 (842)
..........+.+|.+.|++|+|+|+| . |++|+.|++|++||+.+++....+.. .+|
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------------~~~---- 175 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-----------------DVH---- 175 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-----------------TTC----
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-----------------CCC----
Confidence 000003456789999999999999998 4 78999999999999977543222200 111
Q ss_pred ceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe-ecCCceEeeeecccCCCcccccceEEEEEecCCC
Q 003171 305 GFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF-NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (842)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (842)
...+.+++.++++..+++++ +++|++||+++++++..+ ..|..
T Consensus 176 ------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------------------------- 220 (402)
T 2aq5_A 176 ------PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG----------------------------- 220 (402)
T ss_dssp ------CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS-----------------------------
T ss_pred ------CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC-----------------------------
Confidence 34678888888888888776 689999999998876554 22110
Q ss_pred CccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEE---eCCCeEEEEcC-CCCe-eeeee
Q 003171 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG---GANGLLLQWDP-NGNR-LQDFQ 456 (842)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sg---s~DgtIrlWD~-~g~~-l~~l~ 456 (842)
..+..++++|++. +++| +.|+.|++||+ +++. +....
T Consensus 221 -------------------------------------~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~ 263 (402)
T 2aq5_A 221 -------------------------------------TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE 263 (402)
T ss_dssp -------------------------------------SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE
T ss_pred -------------------------------------CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe
Confidence 1134567888888 5566 58999999999 4443 43333
Q ss_pred -cCCccEEEEE--ecCCEEE-EEecCcEEEEEeCC-Ccc-ccccccc--ccCEEEEEeCCCEEEEEcCCCCeeeccccC
Q 003171 457 -YLPFAVQCLC--TFGSQIW-VGYMNGIVQVLDLE-GNL-LGGWVAH--SSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 457 -~H~~~V~sls--~dG~~La-sGs~DgtIrlWD~~-g~~-i~~l~gH--~~~V~sla~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.|...|.+++ ++|++|+ +|+.|++|++||+. ++. +..+..| .+.|.++++.++..+.++.|+.+++|++..
T Consensus 264 ~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 264 LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHE 342 (402)
T ss_dssp CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEcCC
Confidence 4677788775 5788886 55579999999987 442 5566555 489999986544333446788999999865
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.93 E-value=1.4e-24 Score=236.21 Aligned_cols=240 Identities=12% Similarity=0.103 Sum_probs=164.8
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC--CCCEEEE
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp--dg~~LaS 208 (842)
.+.+++.+ ++.|.+ +.|++|||||+.+.... + ......| ..+|.+++|++ ++++|+|
T Consensus 15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~----------------~~~l~gH-~~~V~~v~~~~~~~~~~l~s 76 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-L----------------IADLRGH-EGPVWQVAWAHPMYGNILAS 76 (316)
T ss_dssp CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-E----------------EEEEECC-SSCEEEEEECCGGGSSCEEE
T ss_pred eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-E----------------EEEEcCC-CccEEEEEeCCCCCCCEEEE
Confidence 46667665 445655 56999999998653211 0 0111234 78999999986 4899999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
|+.|++|++||+.++. ......+.+|.++|++|+|+|+ |. |++|+.|++|++||+.+.........
T Consensus 77 ~s~D~~v~iWd~~~~~------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~----- 145 (316)
T 3bg1_A 77 CSYDRKVIIWREENGT------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKI----- 145 (316)
T ss_dssp EETTSCEEEECCSSSC------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCB-----
T ss_pred EECCCEEEEEECCCCc------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeee-----
Confidence 9999999999998752 1356678899999999999998 65 89999999999999875321100000
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-----------------CCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-----------------RAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-----------------~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
+.+| ...+.+++.++. +..+++++ |++|+|||+.++...+.
T Consensus 146 -----------~~~h----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~ 204 (316)
T 3bg1_A 146 -----------NNAH----------TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE 204 (316)
T ss_dssp -----------TTSS----------SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEE
T ss_pred -----------eccc----------cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccce
Confidence 0011 011111222211 34666666 67899999864321000
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
+ ..+.+|...|.+++|
T Consensus 205 ~----------------------------------------------------------------~~l~~h~~~V~~v~~ 220 (316)
T 3bg1_A 205 E----------------------------------------------------------------QKLEAHSDWVRDVAW 220 (316)
T ss_dssp E----------------------------------------------------------------ECCBCCSSCEEEEEC
T ss_pred e----------------------------------------------------------------eecccCCCceEEEEe
Confidence 0 013345566788889
Q ss_pred CCCC-----cEEEEeCCCeEEEEcCCC----C-eeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 428 SIDG-----MIWTGGANGLLLQWDPNG----N-RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 428 s~dg-----~l~Sgs~DgtIrlWD~~g----~-~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
+|++ .|++|+.|++|++||+.. + ..+.+..|...|+++++ +|++|++|+.|++|+||+..
T Consensus 221 sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 221 APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 8875 489999999999999842 1 23456789999999864 78999999999999999964
No 94
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.93 E-value=8.8e-24 Score=234.59 Aligned_cols=283 Identities=13% Similarity=0.116 Sum_probs=196.5
Q ss_pred eeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC----C---CE
Q 003171 134 FLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA----S---GV 205 (842)
Q Consensus 134 ~~~~l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd----g---~~ 205 (842)
.+.+++...+.|++ +.|+.|++||+.+...... .........| ..+|.|++|+|+ + ++
T Consensus 18 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~-------------~~~~~~~~~h-~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 18 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP-------------KDKSYSHFVH-KSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG-------------GGGEEEEECC-TTCEEEEEEEEEEETTTEEEEE
T ss_pred CeEEEEecCCeEEEEcCCCEEEEEECCCcccccC-------------CCcceEEecC-CCcEEEEEEecccccCCccccE
Confidence 56777777766665 5699999999976431100 0001111123 789999999999 9 99
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcce-----eEEeccc-----CCcEEEEEEe----cCCC--EEEeeCCCcEEEEeC
Q 003171 206 VWSGHRDGRIMCWKMNARLLDSDDGFGE-----VLSWQAH-----RGPVLSLCIS----SYGD--LWSGSEGGGIKIWPW 269 (842)
Q Consensus 206 LaSGs~DGtIrlWdl~~g~~~~~~~~~~-----~~~l~gH-----~~~V~slafs----~dG~--L~SgS~DgtIrvWd~ 269 (842)
|++|+.||+|++|++.++ .. ...+.+| ...|++++|+ |++. |++|+.||.|++||+
T Consensus 84 l~s~~~dg~i~iw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITRE--------DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp EEEEETTSCEEEEEEEEC--------TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred EEEEcCCCCEEEEEccCC--------cccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 999999999999999886 33 6778889 5999999999 9886 679999999999999
Q ss_pred CC------ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCC
Q 003171 270 EA------IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR 342 (842)
Q Consensus 270 ~t------~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg 342 (842)
.+ .... .+.+.. . +.+... ....+...+.++++.+++ .+++++ ++.|++||++++
T Consensus 156 ~~~~~~~~~~~~-~~~~~~----~---------~~~~~~---~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 217 (397)
T 1sq9_A 156 HPFADESNSLTL-NWSPTL----E---------LQGTVE---SPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL 217 (397)
T ss_dssp ESSSSHHHHTTT-CCCCEE----E---------EEEEEC---CSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred Ccccccccccee-eccCcc----e---------eeeeec---cccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC
Confidence 76 3211 111000 0 000000 000013457788888888 888777 578999999999
Q ss_pred cEEEEeec---C---CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCC---cEEEEee--
Q 003171 343 ELLKVFNI---D---GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD---AVRRVAA-- 411 (842)
Q Consensus 343 ~~l~~l~~---~---~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~---~v~~v~~-- 411 (842)
+++..+.. | ......+.+++ ++...+++..+ +..+++.
T Consensus 218 ~~~~~~~~~~~h~~~~~~i~~i~~~~-------------------------------~~~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 218 RPLYNFESQHSMINNSNSIRSVKFSP-------------------------------QGSLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp EEEEEEECCC---CCCCCEEEEEECS-------------------------------STTEEEEEEEETTEEEEEEEETT
T ss_pred ceeEEEeccccccccCCccceEEECC-------------------------------CCCEEEEEecCCCCceEEEEECC
Confidence 99888876 4 43333333333 22233333333 3333332
Q ss_pred c----Ccccc-------------CCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeee------cC--------
Q 003171 412 K----GGFGD-------------DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ------YL-------- 458 (842)
Q Consensus 412 ~----g~~~~-------------~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~------~H-------- 458 (842)
. ..+.. |...|.+++++|++. |++|+.||.|++||+ +++++.++. +|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (397)
T 1sq9_A 267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 346 (397)
T ss_dssp TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccc
Confidence 1 12223 678899999999987 889999999999999 789999999 88
Q ss_pred -------CccEEEEEe--cC----------CEEEEEecCcEEEEEeCC
Q 003171 459 -------PFAVQCLCT--FG----------SQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 459 -------~~~V~sls~--dG----------~~LasGs~DgtIrlWD~~ 487 (842)
...|+++++ +| ++|++|+.||.|++||++
T Consensus 347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 999998864 67 699999999999999986
No 95
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.93 E-value=3.9e-24 Score=232.93 Aligned_cols=238 Identities=18% Similarity=0.211 Sum_probs=174.6
Q ss_pred CCCeEEEEEcCCCC-EEEEEeC---CCcEEEEECCCCccCCCCCccee-EEecccCCcEEEEEEecC---CC-EEEeeCC
Q 003171 191 VSSVMCMVGDEASG-VVWSGHR---DGRIMCWKMNARLLDSDDGFGEV-LSWQAHRGPVLSLCISSY---GD-LWSGSEG 261 (842)
Q Consensus 191 ~~~V~~la~dpdg~-~LaSGs~---DGtIrlWdl~~g~~~~~~~~~~~-~~l~gH~~~V~slafs~d---G~-L~SgS~D 261 (842)
..+|.|++|+|++. ++++|+. ||+|++|++.++ +.. ....+|.++|++++|+|+ |. |++|+.|
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG--------DLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS--------SEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC--------cccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 78999999999985 6667777 999999999986 332 233489999999999998 45 8999999
Q ss_pred CcEEEEeCCCcc-ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEE------EcCCCCEEEEeC-CCc
Q 003171 262 GGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL------SDHSRAKVWSAG-FLS 333 (842)
Q Consensus 262 gtIrvWd~~t~~-~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~la------s~~~~~~v~s~s-~~t 333 (842)
|+|++||+.+.. ....+.. | ...+.++. +++++..+++++ +++
T Consensus 90 g~i~iwd~~~~~~~~~~~~~-------------------~----------~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~ 140 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKG-------------------H----------KEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140 (357)
T ss_dssp SCEEEECTTSCSSCSEEECC-------------------C----------SSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred CeEEEEeCCCCCccEEEEEe-------------------c----------ccceEEEeeccccccCCCccEEEEEeCCCe
Confidence 999999997754 2222211 1 23344443 345666777766 679
Q ss_pred EEEEEccCCc-EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec
Q 003171 334 FALWDARTRE-LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK 412 (842)
Q Consensus 334 I~lWD~~tg~-~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~ 412 (842)
|++||+.+++ ++..+..+..
T Consensus 141 i~vwd~~~~~~~~~~~~~~~~----------------------------------------------------------- 161 (357)
T 3i2n_A 141 VKVWDPRQKDDPVANMEPVQG----------------------------------------------------------- 161 (357)
T ss_dssp EEEECTTSCSSCSEEECCCTT-----------------------------------------------------------
T ss_pred EEEEeCCCCCCcceeccccCC-----------------------------------------------------------
Confidence 9999998875 3333322110
Q ss_pred CccccCCCceEEEE----ECCCCc-EEEEeCCCeEEEEcCC-CCeeeeeecCCccEEEEEe-----cCCEEEEEecCcEE
Q 003171 413 GGFGDDNRRTEALT----TSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCT-----FGSQIWVGYMNGIV 481 (842)
Q Consensus 413 g~~~~~~~~v~al~----~s~dg~-l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~~V~sls~-----dG~~LasGs~DgtI 481 (842)
.....+.+++ +++++. +++|+.||.|++||+. +++ .....|...|.++++ ++.+|++|+.||.|
T Consensus 162 ----~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 236 (357)
T 3i2n_A 162 ----ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKF 236 (357)
T ss_dssp ----SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred ----CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence 0011233344 667776 7899999999999994 554 445678999999865 67899999999999
Q ss_pred EEEeCC-Cccccccc-----ccccCEEEEEe--CCC-EEEEEcCCCCeeeccccCCC
Q 003171 482 QVLDLE-GNLLGGWV-----AHSSPVIKMAV--GAG-YIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 482 rlWD~~-g~~i~~l~-----gH~~~V~sla~--dg~-~l~S~S~DgtIrvWd~~~~~ 529 (842)
++||++ ++++..+. +|...|+++++ +++ ++++++.|+.|++||+....
T Consensus 237 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 237 HVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp EEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred EEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 999987 55555554 99999999985 555 79999999999999987644
No 96
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.93 E-value=1.8e-23 Score=232.00 Aligned_cols=265 Identities=8% Similarity=0.045 Sum_probs=183.3
Q ss_pred ceeEEEEecC---CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC-CCCEEE
Q 003171 133 CFLRTIVCTE---EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVW 207 (842)
Q Consensus 133 ~~~~~l~~~~---~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp-dg~~La 207 (842)
..+.+++... +.|.+ +.|+.|+|||+.+...... +....| ..+|.+++|+| ++++|+
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------~~~~~h-~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-----------------IQGMGP-GDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----------------ECCCST-TCBEEEEEEETTEEEEEE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----------------eecCCc-CCceeEEEeCCCCCCEEE
Confidence 3466666653 34554 5689999999976432210 111123 77999999999 789999
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEecc---cCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCce
Q 003171 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA---HRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (842)
Q Consensus 208 SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g---H~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~ 283 (842)
+|+.||+|++||+.+ .....+.+ |...|++++|+|+++ |++|+.|++|++||+.. +....+
T Consensus 136 s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~----- 200 (383)
T 3ei3_B 136 VSSIRGATTLRDFSG---------SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-HEIFKE----- 200 (383)
T ss_dssp EEETTTEEEEEETTS---------CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-CEEEEE-----
T ss_pred EEeCCCEEEEEECCC---------CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-CEEEEe-----
Confidence 999999999999986 34555544 458999999999998 78999999999999842 211111
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccC----CcEEEEeecCCceEee
Q 003171 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDART----RELLKVFNIDGQIENR 357 (842)
Q Consensus 284 ~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~t----g~~l~~l~~~~~~~~~ 357 (842)
.+| ...+.++++++++. .+++++ +++|++||+.+ +.++..+. +......
T Consensus 201 --------------~~h----------~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~ 255 (383)
T 3ei3_B 201 --------------KLH----------KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNA 255 (383)
T ss_dssp --------------ECS----------SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-CSSCEEE
T ss_pred --------------ccC----------CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-CCCceEE
Confidence 112 45678888888887 777776 67999999998 77777763 4433344
Q ss_pred eeccc-CCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec--C----ccc--------------
Q 003171 358 VDMSL-LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--G----GFG-------------- 416 (842)
Q Consensus 358 ~~~s~-~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g----~~~-------------- 416 (842)
+.+++ .. ...+++..++..+++.. + .+.
T Consensus 256 ~~~s~~~~-------------------------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (383)
T 3ei3_B 256 AYFNPTDS-------------------------------TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK 304 (383)
T ss_dssp EEECTTTS-------------------------------CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC
T ss_pred EEEcCCCC-------------------------------CEEEEEcCCCcEEEEECCCCccccccccccccccccccceE
Confidence 44444 22 22223333333332220 0 000
Q ss_pred ---cCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeec--CCccEEEE--EecCCEEEEEecCcEEEEEeCCC
Q 003171 417 ---DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY--LPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEG 488 (842)
Q Consensus 417 ---~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~--H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g 488 (842)
.....+.+++++|||++ +|+.|++|++||+ +++++.++.+ |...+.++ +++|++|++|+ |++|+|||+++
T Consensus 305 ~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 305 ATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 11234556888999988 9999999999999 7999999987 45666664 45899999997 99999999863
No 97
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.3e-24 Score=264.94 Aligned_cols=238 Identities=12% Similarity=0.060 Sum_probs=184.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvW 267 (842)
.++|.|++|+|++++|++|+.||+|++||+.++. ......+.+|.++|++|+|+|+ |. |+||+.||+|++|
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE------EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCCC------CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 7899999999999999999999999999997431 1566788999999999999988 76 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC--CCEEEEeC-CCcEEEEEccCCcE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
|+.++..... . .+.+| ...+.+++++++ +..+++++ +++|++||+.++..
T Consensus 83 d~~~~~~~~~--------~---------~~~~h----------~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~ 135 (753)
T 3jro_A 83 KEENGRWSQI--------A---------VHAVH----------SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135 (753)
T ss_dssp EEETTEEEEE--------E---------EECCC----------SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred ECCCCccccc--------c---------cccCC----------CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence 9866431100 0 01111 456888888887 77888776 67999999987632
Q ss_pred E--EEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCce
Q 003171 345 L--KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (842)
Q Consensus 345 l--~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (842)
. ..+. .|...|
T Consensus 136 ~~~~~~~-------------------------------------------------------------------~~~~~v 148 (753)
T 3jro_A 136 TSPIIID-------------------------------------------------------------------AHAIGV 148 (753)
T ss_dssp CCCEEEE-------------------------------------------------------------------CCSSCE
T ss_pred cceeEee-------------------------------------------------------------------cCCCce
Confidence 1 1111 112223
Q ss_pred EEEEECC-------------CCc-EEEEeCCCeEEEEcC-CC----CeeeeeecCCccEEEEEe--c---CCEEEEEecC
Q 003171 423 EALTTSI-------------DGM-IWTGGANGLLLQWDP-NG----NRLQDFQYLPFAVQCLCT--F---GSQIWVGYMN 478 (842)
Q Consensus 423 ~al~~s~-------------dg~-l~Sgs~DgtIrlWD~-~g----~~l~~l~~H~~~V~sls~--d---G~~LasGs~D 478 (842)
.+++++| ++. +++|+.||+|++||+ .+ .++.++.+|..+|+++++ + |++|++|+.|
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D 228 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence 3344444 444 899999999999999 55 566788899999999864 5 7899999999
Q ss_pred cEEEEEeCCC-c-----ccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccCC
Q 003171 479 GIVQVLDLEG-N-----LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 479 gtIrlWD~~g-~-----~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
|+|++||+.. + .+....+|.+.|++++ ++++++++++.||.|++|++...
T Consensus 229 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9999999863 2 3455667999999988 47889999999999999998753
No 98
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.92 E-value=1.7e-23 Score=255.05 Aligned_cols=304 Identities=14% Similarity=0.155 Sum_probs=213.2
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+.+++.+ +..|.+ +.|+.|+|||+.+...... + ..| .++|.|++|+|++++|++|+
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~-----------------~--~~~-~~~v~~~~~s~~~~~l~~~~ 74 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS-----------------I--QVT-ETPVRAGKFIARKNWIIVGS 74 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE-----------------E--ECC-SSCEEEEEEEGGGTEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE-----------------E--ecC-CCcEEEEEEeCCCCEEEEEe
Confidence 35566655 334554 4588999999976433211 1 123 78999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.||+|++||+.++ +....+.+|.+.|++++|+|+|. |++|+.||+|++||+.+.......
T Consensus 75 ~dg~i~vw~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~----------- 135 (814)
T 3mkq_A 75 DDFRIRVFNYNTG--------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT----------- 135 (814)
T ss_dssp TTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE-----------
T ss_pred CCCeEEEEECCCC--------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE-----------
Confidence 9999999999987 67788999999999999999997 789999999999999664211100
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccCCcEEEEeecCC-ceEeeeecccCCCc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDG-QIENRVDMSLLPDF 366 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~-~~~~~~~~s~~~~~ 366 (842)
+.+| ...+.++++++ ++..+++++ +++|++||+.+++....+..+. ....
T Consensus 136 -------~~~~----------~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~---------- 188 (814)
T 3mkq_A 136 -------FEGH----------EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN---------- 188 (814)
T ss_dssp -------EECC----------SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCC----------
T ss_pred -------EcCC----------CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEE----------
Confidence 0111 34577788877 566677666 6899999998877655554321 1111
Q ss_pred ccccceEEEEEecCCCCccceeeeEee--cCcceEEecCCcEEEEee--cC----ccccCCCceEEEEECCCCc-EEEEe
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQ--RSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGM-IWTGG 437 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~--~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~al~~s~dg~-l~Sgs 437 (842)
.+.+.+ ++...+++..++..+++. .+ .+..|...|.+++++|+|. +++|+
T Consensus 189 ---------------------~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 189 ---------------------YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp ---------------------EEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred ---------------------EEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 122333 334455666666555554 11 2345777889999999987 78999
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCC--EEEEEecCcEEEEEeCCC-c----------cc----------
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGS--QIWVGYMNGIVQVLDLEG-N----------LL---------- 491 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~--~LasGs~DgtIrlWD~~g-~----------~i---------- 491 (842)
.||+|++||+ +++++.++..|...|.+++. +|+ ++++| .++.+.+|++.. . .+
T Consensus 248 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 326 (814)
T 3mkq_A 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAAS 326 (814)
T ss_dssp TTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTT
T ss_pred CCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccce
Confidence 9999999999 68888999999999998865 555 35554 466788887531 1 11
Q ss_pred -----------------------ccccccccCEEEEE--eCCCEEEEEcCCCCeeecccc
Q 003171 492 -----------------------GGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 492 -----------------------~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~ 526 (842)
..+..|...|.+++ ++|+++++++ |+.+++|++.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~ 385 (814)
T 3mkq_A 327 DIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTAL 385 (814)
T ss_dssp CEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred eeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECc
Confidence 11123444566666 4777888777 8888898864
No 99
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.1e-23 Score=223.32 Aligned_cols=277 Identities=13% Similarity=0.106 Sum_probs=198.6
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+.+++.. ++.|++ +.|+.|++||+.+...... + ..| ..+|.+++|+|++++|++|+
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-----------------~--~~h-~~~v~~~~~~~~~~~l~s~~ 93 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-----------------L--DGH-TGTIWSIDVDCFTKYCVTGS 93 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE-----------------E--CCC-SSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh-----------------h--hhc-CCcEEEEEEcCCCCEEEEEe
Confidence 46666665 345555 4689999999976433211 1 123 77999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCC-----CcEEEEeCCCccceeecCCC-ce
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG-----GGIKIWPWEAIEKALSLKPE-ER 283 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D-----gtIrvWd~~t~~~~l~~~~~-~~ 283 (842)
.||+|++||+.++ +....+. |...|.+++|+|+|+ |++++.+ +.|++||+.+.......... ..
T Consensus 94 ~dg~i~iwd~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 164 (369)
T 3zwl_B 94 ADYSIKLWDVSNG--------QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE 164 (369)
T ss_dssp TTTEEEEEETTTC--------CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred CCCeEEEEECCCC--------cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence 9999999999987 5566666 889999999999998 7788888 99999999664321111000 00
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccC-CcEEEEeecCCceEeeeecc
Q 003171 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART-RELLKVFNIDGQIENRVDMS 361 (842)
Q Consensus 284 ~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s 361 (842)
... .+..+. ....+.+++.++++..+++++ ++.|++||+.+ ++.+..+..+......+
T Consensus 165 ~~~---------~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~--- 224 (369)
T 3zwl_B 165 PIH---------KIITHE--------GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM--- 224 (369)
T ss_dssp CSE---------EEECCT--------TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE---
T ss_pred eee---------eccCCc--------CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE---
Confidence 000 000010 012678888888888888776 57899999999 67777776654433333
Q ss_pred cCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cCcc---ccCCCceEEEEECCCCc-EEE
Q 003171 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGGF---GDDNRRTEALTTSIDGM-IWT 435 (842)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~~---~~~~~~v~al~~s~dg~-l~S 435 (842)
.|.+++...+++..++..+++. .+.. ..+...+..++++|++. +++
T Consensus 225 ----------------------------~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 276 (369)
T 3zwl_B 225 ----------------------------QFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIIL 276 (369)
T ss_dssp ----------------------------EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEE
T ss_pred ----------------------------EECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEE
Confidence 3333344445555555555554 1111 12556788999999998 788
Q ss_pred EeCCC--------------eEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 436 GGANG--------------LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 436 gs~Dg--------------tIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
++.++ .|++||. +++++..+.+|...|+++++ +|++|++|+.||+|+|||++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 277 GGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp EECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred eecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 88887 8999999 78999999999999999865 78999999999999999987
No 100
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=5.9e-24 Score=231.63 Aligned_cols=253 Identities=10% Similarity=0.027 Sum_probs=157.4
Q ss_pred EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC-------------------------cEEEEEEecC----CC-
Q 003171 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-------------------------PVLSLCISSY----GD- 254 (842)
Q Consensus 205 ~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~-------------------------~V~slafs~d----G~- 254 (842)
-|++++. .+|++|+...+ ...+.+++|.+|+. .|++|+|+|| ++
T Consensus 56 ~~~~~~~-~~v~lw~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~ 129 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDA-----WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQV 129 (356)
T ss_dssp EEEEEES-SEEEEEEESSS-----SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEE
T ss_pred EEEEecc-ceEEEcccCCC-----ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccE
Confidence 4666665 58999998875 22346677887775 4556666777 55
Q ss_pred EEEeeCCCcEEEEeCCCccceee-cCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC---CCCEEEEeC
Q 003171 255 LWSGSEGGGIKIWPWEAIEKALS-LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH---SRAKVWSAG 330 (842)
Q Consensus 255 L~SgS~DgtIrvWd~~t~~~~l~-~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~---~~~~v~s~s 330 (842)
+++++. ++++|++.+++...+ ...+...+..+.+.... ........+...+..+++++ ++..+++++
T Consensus 130 l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG-------~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS 200 (356)
T 2w18_A 130 LLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG-------GGKENQFLMPPEETILTFAEVQGMQEALLGTT 200 (356)
T ss_dssp EEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTS-------CEEEEEEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred EEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCC-------ceeeeeccCCCceeeEEeeccCCCCceEEEec
Confidence 567664 478888865443222 12233333333221100 00001112244555666555 667888876
Q ss_pred -CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEE
Q 003171 331 -FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRV 409 (842)
Q Consensus 331 -~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v 409 (842)
|++|+|||++||+++++|.++..... ....+.|++++.....+..
T Consensus 201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~----------------------------~v~~vafSpdG~~lvs~s~------ 246 (356)
T 2w18_A 201 IMNNIVIWNLKTGQLLKKMHIDDSYQA----------------------------SVCHKAYSEMGLLFIVLSH------ 246 (356)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---C----------------------------CCEEEEEEETTEEEEEEC-------
T ss_pred CCCcEEEEECCCCcEEEEEcCCCccee----------------------------eeEEEEECCCCCEEEEecc------
Confidence 68999999999999999875432100 0001233333221111110
Q ss_pred eecCccccCCCceEEEEECCCC--cEEEEeCCCeEEEEcC-CCCeeeee-----ecCCccEEEEEecCCEEEEEecCcEE
Q 003171 410 AAKGGFGDDNRRTEALTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDF-----QYLPFAVQCLCTFGSQIWVGYMNGIV 481 (842)
Q Consensus 410 ~~~g~~~~~~~~v~al~~s~dg--~l~Sgs~DgtIrlWD~-~g~~l~~l-----~~H~~~V~sls~dG~~LasGs~DgtI 481 (842)
+++ .++||+.|++|++||. +|+++.++ .+|...+.+...+|..+++|+.|++|
T Consensus 247 -------------------~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTI 307 (356)
T 2w18_A 247 -------------------PCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTI 307 (356)
T ss_dssp ------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCE
T ss_pred -------------------CCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcE
Confidence 111 2689999999999999 78887776 47877777777789999999999999
Q ss_pred EEEeCC-CcccccccccccCEE-EEE--eCCCEEEEEcCCCCeeeccc
Q 003171 482 QVLDLE-GNLLGGWVAHSSPVI-KMA--VGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 482 rlWD~~-g~~i~~l~gH~~~V~-sla--~dg~~l~S~S~DgtIrvWd~ 525 (842)
+|||++ |++++++.+|.+.|. +++ +||++|+|||.|++||+||+
T Consensus 308 kIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 308 AIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999997 889999999998765 465 58899999999999999985
No 101
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.3e-22 Score=216.73 Aligned_cols=266 Identities=17% Similarity=0.253 Sum_probs=188.7
Q ss_pred eeEEEEe-cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 134 FLRTIVC-TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 134 ~~~~l~~-~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
.+.+++. +++.|.+ +.|+.|++||+.+..... ....+ ..+|.+++++|++++|++|+.
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~-~~~v~~~~~~~~~~~l~~~~~ 79 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGT-------------------VVYTG-QGFLNSVCYDSEKELLLFGGK 79 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEESSSEEEE-------------------EEEEC-SSCEEEEEEETTTTEEEEEET
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEE-------------------EeecC-CccEEEEEECCCCCEEEEecC
Confidence 4555554 3446665 568999999986543221 11223 779999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEe
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~ 291 (842)
||.|++|++.... ..+....+.+|...|++++|+ ...|++|+.|++|++||. ......+.
T Consensus 80 dg~i~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d~--~~~~~~~~------------ 139 (313)
T 3odt_A 80 DTMINGVPLFATS-----GEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWKE--GSLVYNLQ------------ 139 (313)
T ss_dssp TSCEEEEETTCCT-----TSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEET--TEEEEEEE------------
T ss_pred CCeEEEEEeeecC-----CCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEcC--CcEEEecc------------
Confidence 9999999987641 124466789999999999993 234899999999999993 22111111
Q ss_pred eceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccCCcEEEEeec-CCceEeeeecccCCCccc
Q 003171 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNI-DGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~-~~~~~~~~~~s~~~~~~~ 368 (842)
.+ ...+..+...+ ++..+++++ ++.|++|| .++.+..+.. +....
T Consensus 140 -------~~----------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i------------- 187 (313)
T 3odt_A 140 -------AH----------NASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVV------------- 187 (313)
T ss_dssp -------CC----------SSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCE-------------
T ss_pred -------cC----------CCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccE-------------
Confidence 11 33455555544 566777666 67999999 4555555543 22221
Q ss_pred ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCceEEEEECCCCcEEEEeCCCeE
Q 003171 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGMIWTGGANGLL 442 (842)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~al~~s~dg~l~Sgs~DgtI 442 (842)
..+.+.+.+. .+++..++..+++. .+ .+..|...+.+++++|++++++|+.||+|
T Consensus 188 ------------------~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v 248 (313)
T 3odt_A 188 ------------------RHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTV 248 (313)
T ss_dssp ------------------EEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEE
T ss_pred ------------------EEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEE
Confidence 1233444444 45666666655554 12 34457788999999999999999999999
Q ss_pred EEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cccc
Q 003171 443 LQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLL 491 (842)
Q Consensus 443 rlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i 491 (842)
++||+ +++++..+..|...|.++++ +|+ +++|+.||.|++||++ ++.+
T Consensus 249 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 249 RIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred EEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 99999 78999999999999999875 566 6678999999999997 4443
No 102
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.92 E-value=5.4e-23 Score=225.53 Aligned_cols=273 Identities=11% Similarity=0.048 Sum_probs=192.3
Q ss_pred eEEEEec--CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 135 LRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 135 ~~~l~~~--~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
+.+++.+ ++.|.++ .|+.|++||+.+.... . ...+ ..| ..+|.+++|+|++++|++|+.
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~-~--------------~~~~--~~h-~~~v~~~~~~~~~~~l~~~~~ 72 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-Q--------------VHEL--KEH-NGQVTGVDWAPDSNRIVTCGT 72 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-E--------------EEEE--ECC-SSCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE-e--------------eeee--cCC-CCcccEEEEeCCCCEEEEEcC
Confidence 4455554 4456555 7999999998754200 0 0011 123 779999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
||+|++||+.++. ......+.+|...|++++|+|+|+ |++|+.|++|++||+.+....... ..+
T Consensus 73 dg~i~vwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-------~~~-- 137 (372)
T 1k8k_C 73 DRNAYVWTLKGRT------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC-------KHI-- 137 (372)
T ss_dssp TSCEEEEEEETTE------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-------EEE--
T ss_pred CCeEEEEECCCCe------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee-------eee--
Confidence 9999999998751 122445578999999999999997 789999999999999764321000 000
Q ss_pred eeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEcc------------------CCcEEEEeecC
Q 003171 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR------------------TRELLKVFNID 351 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~------------------tg~~l~~l~~~ 351 (842)
..+| ...+.++++.+++..+++++ +++|++||+. +++++..+..+
T Consensus 138 ------~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
T 1k8k_C 138 ------KKPI----------RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS 201 (372)
T ss_dssp ------CTTC----------CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred ------eccc----------CCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC
Confidence 0011 34678888988888888876 6799999964 45555555433
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCceEEE
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEAL 425 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~al 425 (842)
... ...+.+.+++...+++..++..+++. .+ .+..+...+.++
T Consensus 202 ~~~-------------------------------v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~ 250 (372)
T 1k8k_C 202 CGW-------------------------------VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV 250 (372)
T ss_dssp SSC-------------------------------EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE
T ss_pred CCe-------------------------------EEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEE
Confidence 322 22344555555566677777666654 12 344567789999
Q ss_pred EECCCCcEEEEeCCCeEEEEcC-C--CC--ee------------------------------------eee-ecCCccEE
Q 003171 426 TTSIDGMIWTGGANGLLLQWDP-N--GN--RL------------------------------------QDF-QYLPFAVQ 463 (842)
Q Consensus 426 ~~s~dg~l~Sgs~DgtIrlWD~-~--g~--~l------------------------------------~~l-~~H~~~V~ 463 (842)
+++|++.+++++.|+.|++||+ + |+ ++ ..+ .+|...|+
T Consensus 251 ~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 330 (372)
T 1k8k_C 251 TFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVS 330 (372)
T ss_dssp EEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEE
T ss_pred EEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcc
Confidence 9999999766669999999999 5 31 11 223 48999999
Q ss_pred EEE---ecC---CEEEEEecCcEEEEEeCC
Q 003171 464 CLC---TFG---SQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 464 sls---~dG---~~LasGs~DgtIrlWD~~ 487 (842)
+++ .+| .+|++|+.||+|++||++
T Consensus 331 ~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 331 QISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp EEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred eeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 986 356 899999999999999985
No 103
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.92 E-value=3e-22 Score=221.79 Aligned_cols=331 Identities=12% Similarity=0.088 Sum_probs=192.3
Q ss_pred eeEEEEecC---CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC-CCCEEEE
Q 003171 134 FLRTIVCTE---EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~~---~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp-dg~~LaS 208 (842)
.+.+++... +.|++ +.|+.|++||+.+....... .. .............| ..+|.+++|+| ++++|++
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~---~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY---TC---KAVCSIGRDHPDVH-RYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE---EE---CEEEEECTTCTTCC-SSCEEEEEECTTCTTCEEE
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE---ec---cccccccccccccC-CCcEEEEEEccCCCcEEEE
Confidence 455666543 45555 46999999999765432210 00 00000000000123 77999999999 7789999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC---C-EEEeeCCCcEEEEeCCCccceeecCCCcee
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---D-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG---~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~ 284 (842)
|+.||+|++||+.++ +....+ .|...+.++++++.+ . +++|+.|+.|++||+.+++....+.
T Consensus 118 ~~~d~~i~iwd~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~----- 183 (408)
T 4a11_B 118 SSFDKTLKVWDTNTL--------QTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ----- 183 (408)
T ss_dssp EETTSEEEEEETTTT--------EEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-----
T ss_pred EeCCCeEEEeeCCCC--------ccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-----
Confidence 999999999999986 444444 478899999999854 3 7899999999999997654322211
Q ss_pred eeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccCCc-EEEEeecCCceEeeeecc
Q 003171 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRE-LLKVFNIDGQIENRVDMS 361 (842)
Q Consensus 285 ~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~tg~-~l~~l~~~~~~~~~~~~s 361 (842)
+| ...+.++++.+++. .+++++ +++|++||++++. ++..+..+.... .
T Consensus 184 --------------~~----------~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~ 234 (408)
T 4a11_B 184 --------------GH----------RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK-----S 234 (408)
T ss_dssp --------------CC----------CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS-----C
T ss_pred --------------CC----------CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc-----c
Confidence 11 44678888888777 466665 6799999998875 444443221100 0
Q ss_pred cCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cCccc----c-----C-CCceEEEEECC
Q 003171 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGGFG----D-----D-NRRTEALTTSI 429 (842)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~~~----~-----~-~~~v~al~~s~ 429 (842)
..... ...........+.|.+++...+++..++..+++. .+... . . ......+....
T Consensus 235 ~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (408)
T 4a11_B 235 QAVES-----------ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC 303 (408)
T ss_dssp CCTTT-----------SSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSS
T ss_pred eeecc-----------ccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCC
Confidence 00000 0001122334567777777778888888777765 11110 0 0 11111233344
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE
Q 003171 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA 505 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla 505 (842)
.+.+++++.|+.|++||+ +++++..+.+|...|+++++ +|++|++|+.||+|++||++ ++.+.....+... ..+.
T Consensus 304 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~ 382 (408)
T 4a11_B 304 SSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK-SQLN 382 (408)
T ss_dssp SSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------
T ss_pred CceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec-cccc
Confidence 556888888999999999 79999999999999998864 78999999999999999997 5555544443322 2222
Q ss_pred e-CCCEEEEEcCCCCeeecccc
Q 003171 506 V-GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 506 ~-dg~~l~S~S~DgtIrvWd~~ 526 (842)
+ ......+.+.|+.+++|+..
T Consensus 383 ~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 383 PAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ----------------------
T ss_pred cccceeecccCccCceeecCCc
Confidence 2 33445577889999999853
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.9e-24 Score=247.82 Aligned_cols=254 Identities=6% Similarity=-0.041 Sum_probs=192.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (842)
..+|.+|+|+|||++||||+.|++|| |...+ ..+.||.+.|.+|+|+|+| .|+++++|+.+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~-----------~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~ 75 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYA-----------KDINCNSKNLFHVKEFPLE------FENKLDFELAQ 75 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCC-----------SCCSSBGGGTEEEEEECCC------CCCTTTTSCCC
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--ccccc-----------ceecCCCccEEEEEECCCC------CcceEEEEeCC
Confidence 45899999999999999999999999 64443 3447999999999999998 56666666653
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEee
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~ 349 (842)
... .+.+. +...|.+++.+++|..+++++ +++|+|||..+ ++..+.
T Consensus 76 ~~~-~~~~~------------------------------~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~ 122 (588)
T 2j04_A 76 QNG-LLNSQ------------------------------PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD 122 (588)
T ss_dssp SSC-SSTTS------------------------------CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC
T ss_pred Cce-EeecC------------------------------CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc
Confidence 211 11111 034688899999999898887 68999999654 555554
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cCcc------------
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGGF------------ 415 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~~------------ 415 (842)
|.... ......++.|+++++..++|..+|..++|. .+.+
T Consensus 123 -~~~~~--------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~ 175 (588)
T 2j04_A 123 -SKGNL--------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIR 175 (588)
T ss_dssp -CSSCS--------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEE
T ss_pred -CCCcc--------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeee
Confidence 32110 011233577888888888888888877776 2221
Q ss_pred ---ccCCCceEEEEECCCCcEEEEeCCCeEEEEcCCCCe----eeeee-cCCccEEEEEecCCEEEEEecCcEEEEEeCC
Q 003171 416 ---GDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNR----LQDFQ-YLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 416 ---~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~~g~~----l~~l~-~H~~~V~sls~dG~~LasGs~DgtIrlWD~~ 487 (842)
.+|...|.+++++||| +++++.|++|++||+.++. .+++. +|...|.++++.|++||+++ +++|++||+.
T Consensus 176 ~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~ 253 (588)
T 2j04_A 176 LSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLK 253 (588)
T ss_dssp CSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETT
T ss_pred cccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECC
Confidence 4566799999999999 9999999999999995433 35674 78899999988789999987 7999999998
Q ss_pred Cccccccc-ccccCEEEEEe----CCCEEEEEcCCCCeeecccc
Q 003171 488 GNLLGGWV-AHSSPVIKMAV----GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 488 g~~i~~l~-gH~~~V~sla~----dg~~l~S~S~DgtIrvWd~~ 526 (842)
++.+..+. +|.+.|+.|++ |++.+++++.||+ |+|.+.
T Consensus 254 ~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 254 NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 66553333 89999998875 5667999999999 999964
No 105
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1e-22 Score=232.21 Aligned_cols=235 Identities=10% Similarity=0.095 Sum_probs=176.9
Q ss_pred CCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCccCCCCCcceeEEec--ccCCcEEEEEEecCCC-EEEeeCCCcE
Q 003171 191 VSSVMCMVGDEASGVV-WSGHRDGRIMCWKMN--ARLLDSDDGFGEVLSWQ--AHRGPVLSLCISSYGD-LWSGSEGGGI 264 (842)
Q Consensus 191 ~~~V~~la~dpdg~~L-aSGs~DGtIrlWdl~--~g~~~~~~~~~~~~~l~--gH~~~V~slafs~dG~-L~SgS~DgtI 264 (842)
.+.|.|++|+|++++| ++|+.||+|++||+. ++ .....+. +|...|++|+|+|+|+ |++|+.|+.|
T Consensus 102 ~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v 173 (450)
T 2vdu_B 102 YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--------NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDV 173 (450)
T ss_dssp CCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--------SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--------ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcE
Confidence 4479999999999996 999999999999998 65 4555565 6789999999999998 7899999999
Q ss_pred EEEeCCCcccee-ecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC---CCEEEEeC-CCcEEEEEc
Q 003171 265 KIWPWEAIEKAL-SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS---RAKVWSAG-FLSFALWDA 339 (842)
Q Consensus 265 rvWd~~t~~~~l-~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~---~~~v~s~s-~~tI~lWD~ 339 (842)
++|++.+..... ... .+.+| ...+.+++++++ +..|++++ +++|++||+
T Consensus 174 ~~~~~~~~~~~~~~~~----------------~~~~h----------~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 174 YSIDINSIPEEKFTQE----------------PILGH----------VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY 227 (450)
T ss_dssp EEEETTSCCCSSCCCC----------------CSEEC----------SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE
T ss_pred EEEecCCcccccccce----------------eeecc----------cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC
Confidence 999987643211 000 01111 446778888887 76777776 679999999
Q ss_pred cCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCC
Q 003171 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (842)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (842)
.+++++..+. .+|.
T Consensus 228 ~~~~~~~~~~------------------------------------------------------------------~~h~ 241 (450)
T 2vdu_B 228 PQCFIVDKWL------------------------------------------------------------------FGHK 241 (450)
T ss_dssp SCTTCEEEEC------------------------------------------------------------------CCCS
T ss_pred CCCceeeeee------------------------------------------------------------------cCCC
Confidence 8876544321 1233
Q ss_pred CceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecC-------------------------CccEEEEEe--cCC
Q 003171 420 RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL-------------------------PFAVQCLCT--FGS 470 (842)
Q Consensus 420 ~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H-------------------------~~~V~sls~--dG~ 470 (842)
..|.+++|+ +|. |++|+.|++|++||+ ++++++++..+ ...|.+++. +|+
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 456678888 776 899999999999999 78888888633 345777754 689
Q ss_pred EEEEEe-cCcEEEEEeC--C-C---cccccccccccCEEEEEeCCC-EEEEEcC-------CCCeeeccccC
Q 003171 471 QIWVGY-MNGIVQVLDL--E-G---NLLGGWVAHSSPVIKMAVGAG-YIFTLAN-------HGGIRGWNVTS 527 (842)
Q Consensus 471 ~LasGs-~DgtIrlWD~--~-g---~~i~~l~gH~~~V~sla~dg~-~l~S~S~-------DgtIrvWd~~~ 527 (842)
+|++++ .|++|+|||+ . + +++..+.+| +.|++++++++ .+++.+. +..|++|.+..
T Consensus 321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 999999 8999999999 4 4 467788888 88999997554 4444433 55688887653
No 106
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.3e-23 Score=233.09 Aligned_cols=291 Identities=13% Similarity=0.140 Sum_probs=183.6
Q ss_pred eeEEEEecC-C--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 134 FLRTIVCTE-E--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 134 ~~~~l~~~~-~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
.+.+++... + .|.+ +.|++|+|||+.+.....+ ....... .| ..+|.|++|+|++++|++|
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-------------~~~~~~~-~h-~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV-------------YSSSLTY-DC-SSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC-------------CSCSEEE-EC-SSCEEEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc-------------cceeeec-cC-CCCEEEEEEeCCCCEEEEE
Confidence 566777655 3 4554 5699999999865211100 0001111 24 7899999999999999999
Q ss_pred eCCCcEEEEECC---CCccCCCCCcceeEEecc------------cCCcEEEEE--EecCCC-EEEeeCCCcEEEEeCCC
Q 003171 210 HRDGRIMCWKMN---ARLLDSDDGFGEVLSWQA------------HRGPVLSLC--ISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 210 s~DGtIrlWdl~---~g~~~~~~~~~~~~~l~g------------H~~~V~sla--fs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
+.||+|++||+. .+ +....+.+ |...+.++. +++++. |++|+.|++|++||+.+
T Consensus 130 s~dg~i~vwd~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 201 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQE--------SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT 201 (437)
T ss_dssp ETTSEEEEEEEEEEEET--------TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred eCCCEEEEEEeccccCC--------ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 999999999995 33 22222222 556677776 456776 78999999999999977
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEee-
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN- 349 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~- 349 (842)
.+....+... .| ...+.++++++++..+++++ +++|++||+++++++.++.
T Consensus 202 ~~~~~~~~~~-----------------~h----------~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 254 (437)
T 3gre_A 202 LERLQIIENS-----------------PR----------HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF 254 (437)
T ss_dssp CCEEEEEECC-----------------GG----------GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC
T ss_pred CeeeEEEccC-----------------CC----------CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec
Confidence 5432222110 01 34688899988888888877 5789999999999998875
Q ss_pred cCCceEeeeecccC----CCccc--ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--------cCcc
Q 003171 350 IDGQIENRVDMSLL----PDFAM--EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--------KGGF 415 (842)
Q Consensus 350 ~~~~~~~~~~~s~~----~~~~~--~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--------~g~~ 415 (842)
.+...+..+.+.+. ....+ ..+..+++|.... .... ..+.++...+..+.. ...+
T Consensus 255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (437)
T 3gre_A 255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQ----------YAFINSDEQPSMEHFLPIEKGLEELNF 323 (437)
T ss_dssp TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT-TEEE----------EEEESSSSCCCGGGGSCBCSSGGGCCC
T ss_pred CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC-CcEE----------EEEEcCCCCCccceeccccccccccee
Confidence 44433344422221 10100 1111122222110 0000 011111111100000 0122
Q ss_pred cc--CCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeec-----------------------------------
Q 003171 416 GD--DNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY----------------------------------- 457 (842)
Q Consensus 416 ~~--~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~----------------------------------- 457 (842)
.+ |...|.+++++++..|++|+.|++|++||+ ++++++.+.+
T Consensus 324 ~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (437)
T 3gre_A 324 CGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDS 403 (437)
T ss_dssp CCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----------
T ss_pred cccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcc
Confidence 33 666788999994445899999999999999 7888877776
Q ss_pred --CCccEEEEEe--c--CCEEEEEecCcEEEEEe
Q 003171 458 --LPFAVQCLCT--F--GSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 458 --H~~~V~sls~--d--G~~LasGs~DgtIrlWD 485 (842)
|.+.|++++. + +.+|++|+.||+|+||+
T Consensus 404 ~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999864 4 55999999999999995
No 107
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.91 E-value=1.4e-22 Score=218.03 Aligned_cols=267 Identities=12% Similarity=0.071 Sum_probs=176.0
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC--CCCEEEE
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp--dg~~LaS 208 (842)
.+.+++.+ +..|.+ +.|+.|++||+.+...... .......| ..+|.|++|+| ++++|++
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~-~~~v~~~~~~~~~d~~~l~s 76 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAH-DSSIVAIDWASPEYGRIIAS 76 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECC-SSCEEEEEECCGGGCSEEEE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcce---------------ecceeccC-CCcEEEEEEcCCCCCCEEEE
Confidence 56677765 335555 5689999999975322100 00011123 78999999999 6999999
Q ss_pred EeCCCcEEEEECCCCccC-CCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEEeCCCccceeecCCCcee
Q 003171 209 GHRDGRIMCWKMNARLLD-SDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~-~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~ 284 (842)
|+.||+|++||+.++... .....+....+.+|.+.|++++|+|+ +. |++|+.|++|++||+.+.+....+.... .
T Consensus 77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~ 155 (351)
T 3f3f_A 77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTS-E 155 (351)
T ss_dssp EETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEE-E
T ss_pred EcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccc-c
Confidence 999999999999875210 00112346778899999999999999 87 7899999999999997754321111000 0
Q ss_pred eeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC---CCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeec
Q 003171 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS---RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (842)
Q Consensus 285 ~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~---~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (842)
.. ...+ ........+.++...+. +..+++++ ++.+.+|+..+++.....
T Consensus 156 ~~-------~~~~--------~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------ 208 (351)
T 3f3f_A 156 MK-------VLSI--------PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA------------ 208 (351)
T ss_dssp EE-------SCSC--------CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE------------
T ss_pred cc-------cccc--------ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee------------
Confidence 00 0000 00011345677777765 66666666 456666665554431110
Q ss_pred ccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC----c-EEE
Q 003171 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG----M-IWT 435 (842)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg----~-l~S 435 (842)
.+..|...|.+++++|++ . |++
T Consensus 209 -----------------------------------------------------~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 209 -----------------------------------------------------KLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp -----------------------------------------------------ECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred -----------------------------------------------------ecCCCCcceeEEEECCCCCCcceEEEE
Confidence 022344556677788876 3 778
Q ss_pred EeCCCeEEEEcC-CC----------------------------------------------CeeeeeecCCccEEEEEe-
Q 003171 436 GGANGLLLQWDP-NG----------------------------------------------NRLQDFQYLPFAVQCLCT- 467 (842)
Q Consensus 436 gs~DgtIrlWD~-~g----------------------------------------------~~l~~l~~H~~~V~sls~- 467 (842)
|+.||+|++||+ .+ +++..+.+|...|+++++
T Consensus 236 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 315 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN 315 (351)
T ss_dssp EETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC
T ss_pred EcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc
Confidence 888888888887 33 677888899999999875
Q ss_pred -cCCEEEEEecCcEEEEEeCC-Cc---cccccccc
Q 003171 468 -FGSQIWVGYMNGIVQVLDLE-GN---LLGGWVAH 497 (842)
Q Consensus 468 -dG~~LasGs~DgtIrlWD~~-g~---~i~~l~gH 497 (842)
+|++|++|+.||+|+|||++ ++ ++..+..|
T Consensus 316 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 316 LTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 350 (351)
T ss_dssp SSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC--
T ss_pred CCCCEEEEecCCCcEEEEecCcCcchhheeehccc
Confidence 68999999999999999987 43 44554444
No 108
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.91 E-value=2.2e-23 Score=236.57 Aligned_cols=247 Identities=14% Similarity=0.149 Sum_probs=187.5
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCC--CCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEE
Q 003171 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDS--DDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~--~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIr 265 (842)
.++|.+++++|+ +.+|++|+.||+|++|++....... .........+.+|.+.|++|+|+|++. |++|+.||+|+
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 789999999997 6899999999999999997620000 001256778899999999999999986 78999999999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccCCc
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRE 343 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~tg~ 343 (842)
+|++.+......... ... .+.+| ...+.+++..+ ++..+++++ ++.|++||++++.
T Consensus 208 vwd~~~~~~~~~~~~---~~~---------~~~~h----------~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 208 LWDINATPKEHRVID---AKN---------IFTGH----------TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN 265 (430)
T ss_dssp EEETTSCCBGGGEEE---CSE---------EECCC----------SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC
T ss_pred EEeCCCCCCCCceec---cce---------eecCC----------CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999976321100000 000 01111 44678888887 556776765 6899999998652
Q ss_pred ---EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCC
Q 003171 344 ---LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (842)
Q Consensus 344 ---~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~ 420 (842)
.+.. +..|..
T Consensus 266 ~~~~~~~-------------------------------------------------------------------~~~~~~ 278 (430)
T 2xyi_A 266 TSKPSHT-------------------------------------------------------------------VDAHTA 278 (430)
T ss_dssp SSSCSEE-------------------------------------------------------------------EECCSS
T ss_pred CCcceeE-------------------------------------------------------------------eecCCC
Confidence 1000 112345
Q ss_pred ceEEEEECCCCc--EEEEeCCCeEEEEcC-C-CCeeeeeecCCccEEEEEe--cCC-EEEEEecCcEEEEEeCCC-----
Q 003171 421 RTEALTTSIDGM--IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLEG----- 488 (842)
Q Consensus 421 ~v~al~~s~dg~--l~Sgs~DgtIrlWD~-~-g~~l~~l~~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~g----- 488 (842)
.|.+++++|++. +++|+.||+|++||+ + +.++.++.+|...|.++++ +++ .|++|+.|++|+|||+..
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~ 358 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence 577889999885 789999999999999 4 5788999999999999865 564 799999999999999863
Q ss_pred ----------cccccccccccCEEEEEe--CCC-EEEEEcCCCCeeecccc
Q 003171 489 ----------NLLGGWVAHSSPVIKMAV--GAG-YIFTLANHGGIRGWNVT 526 (842)
Q Consensus 489 ----------~~i~~l~gH~~~V~sla~--dg~-~l~S~S~DgtIrvWd~~ 526 (842)
+++..+.+|.+.|.++++ ++. .++|++.|+.|++|++.
T Consensus 359 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 567788899999999986 555 89999999999999974
No 109
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.91 E-value=3.8e-23 Score=228.35 Aligned_cols=287 Identities=11% Similarity=0.035 Sum_probs=179.4
Q ss_pred eEEEEec--CCEEEEe-cCCCEEEEeCCCC--ccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 135 LRTIVCT--EEQLWAG-GENGLRVWNLKEL--YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 135 ~~~l~~~--~~~l~~~-~D~~vrvWdl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
+.+++.. ++.|.++ .|+.|++||+.+. .... .+. .| ..+|.|++|+|++++|++|
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~-----------------~~~--~h-~~~v~~~~~s~~~~~l~s~ 73 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR-----------------TFS--DH-DKIVTCVDWAPKSNRIVTC 73 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC-----------------CBC--CC-SSCEEEEEECTTTCCEEEE
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE-----------------EEe--cC-CceEEEEEEeCCCCEEEEE
Confidence 4444444 4455554 6999999999754 2111 111 23 7799999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
+.||+|++||+.++. .......+.+|.+.|++++|+|+|+ |++|+.|++|++||+.+.+... . ..
T Consensus 74 s~d~~v~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~------~~-- 139 (377)
T 3dwl_C 74 SQDRNAYVYEKRPDG-----TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW-V------SK-- 139 (377)
T ss_dssp ETTSSEEEC-----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC-C------CE--
T ss_pred eCCCeEEEEEcCCCC-----ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce-e------ee--
Confidence 999999999998851 1235677889999999999999997 8999999999999997643100 0 00
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (842)
.+.+ .+...+.++++++++..+++++ +++|++||+.+++........ .....
T Consensus 140 -------~~~~---------~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~~- 192 (377)
T 3dwl_C 140 -------HLKR---------PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS----------VWGSR- 192 (377)
T ss_dssp -------EECS---------SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSC----------SSCSC-
T ss_pred -------Eeec---------ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccc----------ccccc-
Confidence 0111 0145688899988888888876 678999999754421100000 00000
Q ss_pred cccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC--------ccccCCCceEEEEECCCCc-EEEE
Q 003171 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG--------GFGDDNRRTEALTTSIDGM-IWTG 436 (842)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g--------~~~~~~~~v~al~~s~dg~-l~Sg 436 (842)
.. ..+ ..........+..+.|.+++...+++..++..+++. .+ .+..|...|.+++++|+|. |++|
T Consensus 193 ~~-~~~--~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 193 LP-FNT--VCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAG 269 (377)
T ss_dssp CC-EEE--EEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEE
T ss_pred cc-hhh--hhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEE
Confidence 00 000 000001122334566777777777788887776664 22 2345777899999999998 5666
Q ss_pred eCCCeEEEEcCC--C-Ceee----------------------------------ee----------------ecCCccEE
Q 003171 437 GANGLLLQWDPN--G-NRLQ----------------------------------DF----------------QYLPFAVQ 463 (842)
Q Consensus 437 s~DgtIrlWD~~--g-~~l~----------------------------------~l----------------~~H~~~V~ 463 (842)
+.|+ +.+|+.. + +... .| ..|.+.|+
T Consensus 270 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~ 348 (377)
T 3dwl_C 270 YNYS-PILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIA 348 (377)
T ss_dssp SSSS-EEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEE
T ss_pred cCCc-EEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeE
Confidence 6555 5577662 2 1111 11 12999999
Q ss_pred EEEe---cCC---EEEEEecCcEEEEEeC
Q 003171 464 CLCT---FGS---QIWVGYMNGIVQVLDL 486 (842)
Q Consensus 464 sls~---dG~---~LasGs~DgtIrlWD~ 486 (842)
++.+ ++. +|++|+.||+|+|||+
T Consensus 349 ~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 349 TLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred EEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 9864 233 7999999999999995
No 110
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.91 E-value=2.1e-23 Score=236.97 Aligned_cols=285 Identities=12% Similarity=0.085 Sum_probs=187.2
Q ss_pred cccccccCCCcccccccccccCCCCC--CCceeecCCCCCccccCceeEEEEec---CCEEEE-ecCCCEEEEeCCCCcc
Q 003171 90 LPEYIGKGGDIPMFKPPVRAALHPAR--PPSLEVKPHPLRETQIGCFLRTIVCT---EEQLWA-GGENGLRVWNLKELYD 163 (842)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~l~~-~~D~~vrvWdl~~~~~ 163 (842)
.+..|+.|+.+|. |+-|-.... +..+.+..| ...+.+|+.. ++.|++ +.|++||+||+++...
T Consensus 131 ~~~~lasGs~dg~----i~lWd~~~~~~~~~~~~~gH-------~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~ 199 (435)
T 4e54_B 131 HPSTVAVGSKGGD----IMLWNFGIKDKPTFIKGIGA-------GGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199 (435)
T ss_dssp CTTCEEEEETTSC----EEEECSSCCSCCEEECCCSS-------SCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred CCCEEEEEeCCCE----EEEEECCCCCceeEEEccCC-------CCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence 5667777777775 444422211 112222233 1356677764 346665 5699999999965321
Q ss_pred ccccccccccCCCCCCCCCCeeeeeec-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC
Q 003171 164 ESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG 242 (842)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~ 242 (842)
.. +.. .+. ...+.|++++|++++|++|+.||+|++||+.+ +++.++.+|.+
T Consensus 200 ~~------------------~~~-~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~---------~~~~~~~~h~~ 251 (435)
T 4e54_B 200 RV------------------FAS-SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG---------KELWNLRMHKK 251 (435)
T ss_dssp EE------------------EEC-CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS---------CBCCCSBCCSS
T ss_pred eE------------------Eec-cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc---------ceeEEEecccc
Confidence 10 100 111 44688999999999999999999999999976 46778899999
Q ss_pred cEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEc
Q 003171 243 PVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (842)
Q Consensus 243 ~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~ 320 (842)
.|++|+|+|++. |++|+.|++|+|||+.+......+.. ..+| ...|.+++++
T Consensus 252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~----------------~~~h----------~~~v~~~~~s 305 (435)
T 4e54_B 252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY----------------SLPH----------RHPVNAACFS 305 (435)
T ss_dssp CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB----------------CCBC----------SSCEEECCBC
T ss_pred eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE----------------eeec----------cccccceeEC
Confidence 999999999986 67999999999999976432211110 0111 3467788888
Q ss_pred CCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceE
Q 003171 321 HSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAI 399 (842)
Q Consensus 321 ~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~ 399 (842)
+++..|++++ |++|+|||+.++++...+..+..... .. . ... ...+.
T Consensus 306 pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~----~~--~------------~~~-------~~~~~------- 353 (435)
T 4e54_B 306 PDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF----QH--L------------TPI-------KAAWH------- 353 (435)
T ss_dssp TTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC----SS--S------------CCC-------BCEEC-------
T ss_pred CCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc----cc--c------------eeE-------EEEEc-------
Confidence 8888888877 68999999999988776654432100 00 0 000 00010
Q ss_pred EecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEeCCCeEEEEcC-CCCeeeeee-cCCccEEEE---EecCCEE
Q 003171 400 MGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQ-YLPFAVQCL---CTFGSQI 472 (842)
Q Consensus 400 ~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~-~g~~l~~l~-~H~~~V~sl---s~dG~~L 472 (842)
....+..+.+++++. ++++..+++|++||. +|+++.++. +|...|.++ +++|++|
T Consensus 354 ------------------~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~l 415 (435)
T 4e54_B 354 ------------------PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTL 415 (435)
T ss_dssp ------------------SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCE
T ss_pred ------------------CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEE
Confidence 111223344556665 345556778999999 788888765 688888765 4589999
Q ss_pred EEEecCcEEEEEeCC-Ccc
Q 003171 473 WVGYMNGIVQVLDLE-GNL 490 (842)
Q Consensus 473 asGs~DgtIrlWD~~-g~~ 490 (842)
++|+ |++|+|||++ |+.
T Consensus 416 asg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 416 ASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEEC-SSEEEECCCC----
T ss_pred EEEc-CCcEEEEECCcCee
Confidence 9876 8899999987 554
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.91 E-value=1e-22 Score=225.44 Aligned_cols=261 Identities=8% Similarity=0.012 Sum_probs=178.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd 268 (842)
..+|.|++|+|||++|++|+.|| +++|++.++ ..... .+...+..+++.+++. + ++|+.|++|+|||
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV--------AHIMS--QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE--------EEEEE--EECSCCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCE-EEEEecCCc--------ceeee--eecCCeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 77999999999999999999886 789998875 33333 2333577888888876 4 5788999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCC-cEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTR-ELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg-~~l~~ 347 (842)
+.+++....+. ....+..+..+++ .+..+.+++|++||+.++ +.+.+
T Consensus 88 ~~~~~~~~~~~------------------------------~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~ 135 (355)
T 3vu4_A 88 DVKKQDVSRIK------------------------------VDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRITD 135 (355)
T ss_dssp TTTTEEEEEEE------------------------------CSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSSC
T ss_pred CCCCcEEEEEE------------------------------CCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeEE
Confidence 97654322111 0234566666543 445556789999999987 55444
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEE-ecCCcEEEEee---------------
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM-GAADAVRRVAA--------------- 411 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~-g~~~~v~~v~~--------------- 411 (842)
+.. ......+++ ...+.. |..++..+++.
T Consensus 136 ~~~---~~~~~~~s~--------------------------------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~ 180 (355)
T 3vu4_A 136 DIR---FGGVCEFSN--------------------------------GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ 180 (355)
T ss_dssp CEE---EEEEEEEET--------------------------------TEEEEEESSCTTCEEEEECCC------------
T ss_pred ecc---CCceEEEEc--------------------------------cEEEEeCCCcCcEEEEEECCCCCcccccccccc
Confidence 432 101111111 000011 22222222221
Q ss_pred -------cCccccCCCceEEEEECCCCc-EEEEeCCCe-EEEEcC-CCCeeeeee-c-CCccEEEEEe--cCCEEEEEec
Q 003171 412 -------KGGFGDDNRRTEALTTSIDGM-IWTGGANGL-LLQWDP-NGNRLQDFQ-Y-LPFAVQCLCT--FGSQIWVGYM 477 (842)
Q Consensus 412 -------~g~~~~~~~~v~al~~s~dg~-l~Sgs~Dgt-IrlWD~-~g~~l~~l~-~-H~~~V~sls~--dG~~LasGs~ 477 (842)
...+..|...|.+++|+|||. |++|+.|++ |++||+ +++++.++. + |...|+++++ +|++|++|+.
T Consensus 181 ~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~ 260 (355)
T 3vu4_A 181 QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD 260 (355)
T ss_dssp ------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET
T ss_pred ccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC
Confidence 112456888999999999998 899999998 999999 799999998 6 9999999865 7899999999
Q ss_pred CcEEEEEeCC-Cc--ccccccc---------------------cccCEEEEE--eCCCEEEEEcCCCCeeeccccCCC
Q 003171 478 NGIVQVLDLE-GN--LLGGWVA---------------------HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 478 DgtIrlWD~~-g~--~i~~l~g---------------------H~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
|++|+|||++ +. ....+.+ +...+..++ .|++.+++++.||.+++|++....
T Consensus 261 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 261 KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9999999985 22 1111111 111123344 578899999999999999986543
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.90 E-value=1.7e-22 Score=226.35 Aligned_cols=246 Identities=17% Similarity=0.140 Sum_probs=179.8
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec-CCC-EEEeeCCCcEEEEeCC
Q 003171 194 VMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWE 270 (842)
Q Consensus 194 V~~la~dpdg~-~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIrvWd~~ 270 (842)
..+++++|+.. ++++|+.||.|++|++.... ........+.+|.++|++++|+| ++. |++|+.||+|+|||+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~----~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTG----RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCE----ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCC----CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 34577888664 45578999999999986531 11123456789999999999999 777 7899999999999997
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCC-CEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
+......... ... .+.+| ...+.++++.+++ ..+++++ +++|++||+.+++++.++
T Consensus 113 ~~~~~~~~~~---~~~---------~~~~h----------~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 170 (402)
T 2aq5_A 113 DGGLVLPLRE---PVI---------TLEGH----------TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170 (402)
T ss_dssp TTCCSSCBCS---CSE---------EEECC----------SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCCccccCC---ceE---------EecCC----------CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE
Confidence 6431110000 000 11122 4568889998886 5777766 679999999988775544
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
.. ..|...|.+++++
T Consensus 171 ~~-----------------------------------------------------------------~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 171 GP-----------------------------------------------------------------DVHPDTIYSVDWS 185 (402)
T ss_dssp CT-----------------------------------------------------------------TTCCSCEEEEEEC
T ss_pred ec-----------------------------------------------------------------CCCCCceEEEEEC
Confidence 10 1233446678899
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeeee-ecCCcc-EEEEE--ecCCEEEEE---ecCcEEEEEeCC-Ccc-ccccc-c
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFA-VQCLC--TFGSQIWVG---YMNGIVQVLDLE-GNL-LGGWV-A 496 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l-~~H~~~-V~sls--~dG~~LasG---s~DgtIrlWD~~-g~~-i~~l~-g 496 (842)
|+|. |++|+.||+|++||+ +++++.++ .+|... +.++. ++|++|++| +.|+.|++||+. ++. +.... .
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~ 265 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD 265 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence 9887 899999999999999 78888888 788875 66664 578899999 789999999987 333 33333 5
Q ss_pred cccCEEEEE--eCCCEEE-EEcCCCCeeeccccCCCC
Q 003171 497 HSSPVIKMA--VGAGYIF-TLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 497 H~~~V~sla--~dg~~l~-S~S~DgtIrvWd~~~~~~ 530 (842)
|...|.+++ ++++.++ +++.|++|++|++....+
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 777888887 4778886 666899999999987654
No 113
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.90 E-value=9.8e-22 Score=213.15 Aligned_cols=263 Identities=11% Similarity=0.115 Sum_probs=185.0
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCC-EEEEE
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG-VVWSG 209 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~-~LaSG 209 (842)
.+.+++.. +..|++ +.|+.|++||+.+...... +.....+ ..+|.|++++|+++ +|++|
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~-~~~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRY-KHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE----------------EEEEEEC-SSCEEEEEEEESSSEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeec-CCceEEEEECCCCCcEEEEE
Confidence 45566654 445665 5699999999875431100 0111133 78999999999999 99999
Q ss_pred eCCCcEEEEEC-CCCccCCCCCcceeEEecc--cCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC---------cccee
Q 003171 210 HRDGRIMCWKM-NARLLDSDDGFGEVLSWQA--HRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA---------IEKAL 276 (842)
Q Consensus 210 s~DGtIrlWdl-~~g~~~~~~~~~~~~~l~g--H~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t---------~~~~l 276 (842)
+.||+|++||+ .++ ....+.+ |.+.|++++|+| +. |++|+.|++|++||+.+ .+...
T Consensus 76 ~~dg~i~~wd~~~~~---------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 76 TVQGEILKVDLIGSP---------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp ETTSCEEEECSSSSS---------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred cCCCeEEEEEeccCC---------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 99999999999 875 3577888 999999999999 66 78999999999999865 21111
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccC-CcEE--EEeecCCc
Q 003171 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDART-RELL--KVFNIDGQ 353 (842)
Q Consensus 277 ~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~t-g~~l--~~l~~~~~ 353 (842)
.+. ....+.+++..+++ .+.++.+++|++||+.+ +... .....+..
T Consensus 146 ~~~------------------------------~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 194 (342)
T 1yfq_A 146 NTK------------------------------VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY 194 (342)
T ss_dssp SSS------------------------------SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSS
T ss_pred EEe------------------------------eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCC
Confidence 000 13456677776655 34344467999999988 5431 11111111
Q ss_pred eEeeeecccCCCcccccceEEEEEecCCCCccceeeeEee-cCcceEEecCCcEEEEee--cC----------ccccC--
Q 003171 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAA--KG----------GFGDD-- 418 (842)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~-~~~~~~~g~~~~v~~v~~--~g----------~~~~~-- 418 (842)
. ...+.+.+ ++...+++..++..+++. .+ .+..+
T Consensus 195 ~-------------------------------i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T 1yfq_A 195 Q-------------------------------IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp C-------------------------------EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred c-------------------------------eeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccc
Confidence 1 11234444 444455566666555533 11 12223
Q ss_pred -------CCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecC-CccEEEEEecCCEEEEEecCcE-EEEEe
Q 003171 419 -------NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL-PFAVQCLCTFGSQIWVGYMNGI-VQVLD 485 (842)
Q Consensus 419 -------~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H-~~~V~sls~dG~~LasGs~Dgt-IrlWD 485 (842)
...|.+++++|++. |++|+.||.|++||+ +++++.++.+| ..+|++++++|++|++|+.||+ .+.|.
T Consensus 244 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred cccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCccccccc
Confidence 33899999999987 899999999999999 68999999998 9999999999999999999998 65555
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.90 E-value=1.5e-21 Score=212.68 Aligned_cols=266 Identities=12% Similarity=0.140 Sum_probs=178.6
Q ss_pred ceeEEEEecCC-----EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEE
Q 003171 133 CFLRTIVCTEE-----QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV 206 (842)
Q Consensus 133 ~~~~~l~~~~~-----~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~L 206 (842)
..+.+++...+ .|++ +.|+.|++||+.+..... ......| ..+|.+++|+|++++|
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~-----------------~~~~~~h-~~~v~~~~~~~~~~~l 101 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI-----------------PKAQQMH-TGPVLDVCWSDDGSKV 101 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE-----------------EEEEEEC-SSCEEEEEECTTSSEE
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee-----------------EEEeccc-cCCEEEEEECcCCCEE
Confidence 45777877643 4444 558999999997521110 0111234 7899999999999999
Q ss_pred EEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEE--ecCCC-EEEeeCCCcEEEEeCCCccceeecCCCce
Q 003171 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI--SSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (842)
Q Consensus 207 aSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slaf--s~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~ 283 (842)
++|+.||+|++||+.++ ....+.+|.++|++++| ++++. |++|+.|++|++||+.+.+....+..
T Consensus 102 ~s~~~dg~v~iwd~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--- 169 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSN---------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL--- 169 (368)
T ss_dssp EEEETTSEEEEEETTTT---------EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC---
T ss_pred EEEcCCCcEEEEEcCCC---------CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec---
Confidence 99999999999999985 34557889999999999 88887 78999999999999977543222211
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccC
Q 003171 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (842)
Q Consensus 284 ~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (842)
...+.++.... ...+.++.++.+++||+.+............
T Consensus 170 ---------------------------~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------- 211 (368)
T 3mmy_A 170 ---------------------------PERCYCADVIY-PMAVVATAERGLIVYQLENQPSEFRRIESPL---------- 211 (368)
T ss_dssp ---------------------------SSCEEEEEEET-TEEEEEEGGGCEEEEECSSSCEEEEECCCSC----------
T ss_pred ---------------------------CCCceEEEecC-CeeEEEeCCCcEEEEEeccccchhhhccccc----------
Confidence 11222233321 2333444467899999987654222110000
Q ss_pred CCcccccceEEEEEecCCCCccceeeeEeecCc----ceEEecCCcEEEEeec--C-------ccccCCC----------
Q 003171 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR----NAIMGAADAVRRVAAK--G-------GFGDDNR---------- 420 (842)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~----~~~~g~~~~v~~v~~~--g-------~~~~~~~---------- 420 (842)
......+.+..... ..+++..++..+++.. . .+..|..
T Consensus 212 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (368)
T 3mmy_A 212 -------------------KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQD 272 (368)
T ss_dssp -------------------SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEE
T ss_pred -------------------cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccccc
Confidence 00000111111111 1455666665555531 1 1222322
Q ss_pred --ceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEe
Q 003171 421 --RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 421 --~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (842)
.|.+++++|++. |++|+.||.|++||+ +++++.++.+|..+|+++++ +|++|++|+.|+..+.|+
T Consensus 273 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 273 IYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp ECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred ccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 699999999986 899999999999999 78999999999999999865 789999999987555554
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.90 E-value=2.6e-21 Score=214.72 Aligned_cols=251 Identities=9% Similarity=0.071 Sum_probs=186.1
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~L-aSGs~DGtIrlWdl~~g~~~ 226 (842)
+.|+.|++||+++..... .+.+...+.|++++|+|+.| ++++.|++|++||+.++
T Consensus 9 ~~d~~v~v~d~~~~~~~~---------------------~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--- 64 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTA---------------------TIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--- 64 (391)
T ss_dssp TTTTEEEEEETTTTEEEE---------------------EEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---
T ss_pred CCCCEEEEEECCCCeEEE---------------------EeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC---
Confidence 458999999997653321 11224468999999999976 78889999999999887
Q ss_pred CCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceecc
Q 003171 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (842)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~ 304 (842)
+....+..|. .|.+++|+|+|+ | ++++.|++|++||+.+++....+.
T Consensus 65 -----~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~------------------------- 113 (391)
T 1l0q_A 65 -----NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK------------------------- 113 (391)
T ss_dssp -----EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-------------------------
T ss_pred -----eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-------------------------
Confidence 5566666555 999999999998 5 467788999999997653221110
Q ss_pred ceeeeecCCEEEEEEcCCCCEE-EEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCC
Q 003171 305 GFSSILTSDIKNLLSDHSRAKV-WSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (842)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~v-~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (842)
....+..++.++++..+ ++++ ++.|++||+.+++++..+..+.
T Consensus 114 -----~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~------------------------------ 158 (391)
T 1l0q_A 114 -----TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR------------------------------ 158 (391)
T ss_dssp -----CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS------------------------------
T ss_pred -----CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC------------------------------
Confidence 02245677788888766 4555 5789999999988765543211
Q ss_pred CccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-E-EEEeCCCeEEEEcC-CCCeeeeeecCC
Q 003171 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-I-WTGGANGLLLQWDP-NGNRLQDFQYLP 459 (842)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l-~Sgs~DgtIrlWD~-~g~~l~~l~~H~ 459 (842)
.+..++++|+|. + ++++.|++|++||+ +++++..+. |.
T Consensus 159 --------------------------------------~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~ 199 (391)
T 1l0q_A 159 --------------------------------------SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VE 199 (391)
T ss_dssp --------------------------------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CS
T ss_pred --------------------------------------CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cC
Confidence 123567888886 5 56778899999999 677777665 45
Q ss_pred ccEEEEE--ecCCEEEEEe---cCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEE-EEEcCCCCeeeccccCC
Q 003171 460 FAVQCLC--TFGSQIWVGY---MNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYI-FTLANHGGIRGWNVTSP 528 (842)
Q Consensus 460 ~~V~sls--~dG~~LasGs---~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l-~S~S~DgtIrvWd~~~~ 528 (842)
..+.+++ ++|++|++++ .++.|++||++ ++++..+..|.. +.+++ ++++++ ++++.|+.|++||+.+.
T Consensus 200 ~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 6777775 4788999888 68999999987 677788877764 67766 468777 68899999999998763
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.7e-22 Score=227.51 Aligned_cols=238 Identities=10% Similarity=0.025 Sum_probs=179.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec---------------------------------
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--------------------------------- 238 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~--------------------------------- 238 (842)
.|+.|++++++|++|+++ .++.|++||+.+|. ..+.+..|.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPN-----HWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS 78 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTT-----EEEEEEEEECCC------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCC-----cceeeeecCCccccccccccccchhhcccccccccccccccc
Confidence 388999999999977665 57899999998872 000233333
Q ss_pred ---------------------ccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCC--CccceeecCCCceeeeEEEEeec
Q 003171 239 ---------------------AHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWE--AIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 239 ---------------------gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~--t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
+|.+.|++++|+|+|+ | ++|+.||+|+|||+. ++.....+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-------------- 144 (450)
T 2vdu_B 79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-------------- 144 (450)
T ss_dssp ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE--------------
T ss_pred CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee--------------
Confidence 4556899999999998 5 799999999999997 433211110
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccce
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
.+ .....+.++++++++..|++++ ++.|++||+.+++.... .
T Consensus 145 -----~~--------~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~------~------------------ 187 (450)
T 2vdu_B 145 -----RF--------CFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF------T------------------ 187 (450)
T ss_dssp -----EE--------ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC------C------------------
T ss_pred -----cc--------cCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc------c------------------
Confidence 00 0134577888998888888877 47899999876543100 0
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC---Cc-EEEEeCCCeEEEEcC-
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID---GM-IWTGGANGLLLQWDP- 447 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d---g~-l~Sgs~DgtIrlWD~- 447 (842)
. ..+..|...|.+++++|+ +. |++|+.|++|++||+
T Consensus 188 -------~--------------------------------~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~ 228 (450)
T 2vdu_B 188 -------Q--------------------------------EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP 228 (450)
T ss_dssp -------C--------------------------------CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES
T ss_pred -------c--------------------------------eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC
Confidence 0 012234566788899999 85 899999999999999
Q ss_pred CCCeeee-eecCCccEEEEEe-cCCEEEEEecCcEEEEEeCC-Cccccccccc-------------------------cc
Q 003171 448 NGNRLQD-FQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-------------------------SS 499 (842)
Q Consensus 448 ~g~~l~~-l~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH-------------------------~~ 499 (842)
+++++.. +.+|...|+++++ +|++|++|+.|++|+|||+. ++++..+..| ..
T Consensus 229 ~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
T 2vdu_B 229 QCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF 308 (450)
T ss_dssp CTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred CCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceE
Confidence 6888887 5689999999877 68999999999999999987 7777666543 35
Q ss_pred CEEEEE--eCCCEEEEEc-CCCCeeeccc
Q 003171 500 PVIKMA--VGAGYIFTLA-NHGGIRGWNV 525 (842)
Q Consensus 500 ~V~sla--~dg~~l~S~S-~DgtIrvWd~ 525 (842)
.|.+|+ ++++++++++ .|++|++|++
T Consensus 309 ~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 309 AVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 688887 4788999888 8999999998
No 117
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9.5e-23 Score=223.69 Aligned_cols=229 Identities=8% Similarity=-0.020 Sum_probs=165.6
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCC
Q 003171 201 EASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKP 280 (842)
Q Consensus 201 pdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~ 280 (842)
+++.+|+||+.||+|++||+.++ +.+..+. .+.|.+++|+|+ ++|||.|++|++|+............
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~--------~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDS--------KTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSS--------SCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred CCCCEEEEECCCCcEEEEECCCC--------cEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCC
Confidence 46789999999999999999987 4555554 567888999997 99999999999999864221111111
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC--CCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEee
Q 003171 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENR 357 (842)
Q Consensus 281 ~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~--~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (842)
.. .... + ...+...+.++++.+ ++..+++++ +++|++||+.+++++..+..+
T Consensus 114 ~~-~~~~------------~------~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------ 168 (343)
T 3lrv_A 114 NK-VLRE------------I------EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK------ 168 (343)
T ss_dssp CC-EEEE------------E------ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC------
T ss_pred cc-eeEE------------e------ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC------
Confidence 00 0000 0 000134688888888 888888776 689999999998874433110
Q ss_pred eecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEE
Q 003171 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (842)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sg 436 (842)
+...+.+++++|||. +++|
T Consensus 169 ------------------------------------------------------------~~~~i~~~~~~pdg~~lasg 188 (343)
T 3lrv_A 169 ------------------------------------------------------------SDVEYSSGVLHKDSLLLALY 188 (343)
T ss_dssp ------------------------------------------------------------SSCCCCEEEECTTSCEEEEE
T ss_pred ------------------------------------------------------------CCCceEEEEECCCCCEEEEE
Confidence 112255788999988 6889
Q ss_pred eCCCeEEEEcC-CCCee-eeeec-CCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cccccccc---ccccCEE--EEE
Q 003171 437 GANGLLLQWDP-NGNRL-QDFQY-LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWV---AHSSPVI--KMA 505 (842)
Q Consensus 437 s~DgtIrlWD~-~g~~l-~~l~~-H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~---gH~~~V~--sla 505 (842)
+.||+|++||+ +++++ .++.+ |..+|+++++ +|.+|++|+ |++|+|||++ ++++.++. .|...+. +++
T Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD 267 (343)
T ss_dssp CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEE
T ss_pred cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEE
Confidence 99999999999 67777 78888 9999999875 788999999 5599999997 55544444 3555554 365
Q ss_pred --eCCCEEEEEcC-CCCeeeccccC
Q 003171 506 --VGAGYIFTLAN-HGGIRGWNVTS 527 (842)
Q Consensus 506 --~dg~~l~S~S~-DgtIrvWd~~~ 527 (842)
++++++++++. |+.|++|++..
T Consensus 268 ~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 268 IDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECT
T ss_pred ECCCCCEEEEecCCCCcEEEEEEcc
Confidence 57889999998 99999999754
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.90 E-value=6.9e-23 Score=229.95 Aligned_cols=262 Identities=14% Similarity=0.081 Sum_probs=154.0
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC--------CCCEEEEEeCCCcEEEEE
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--------ASGVVWSGHRDGRIMCWK 219 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp--------dg~~LaSGs~DGtIrlWd 219 (842)
+.|++||+||+.+...... ..... ...| .+.|.+|+|+| |+++|||||.|++||+||
T Consensus 108 ~~d~~v~lw~~~~~~~~~~------------~~~~~--~~gH-~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 108 CQDNTVRLIITKNETIITQ------------HVLGG--KSGH-HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp ETTSCEEEEEEETTEEEEE------------EEECT--TTSC-SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred eCCCcEEEEECCCCcccee------------eeecc--cCCC-CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 5699999999876432210 00001 1134 88999999998 889999999999999999
Q ss_pred CCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCceee--eEEEEeecee
Q 003171 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHT--AALIVERSYI 295 (842)
Q Consensus 220 l~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~--~~l~~~~s~~ 295 (842)
+.++ .++..+.+|.++|.+|+|+|++. |++|+.|++||+||+.+++............ ..+.....
T Consensus 173 ~~~~--------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~-- 242 (393)
T 4gq1_A 173 LTDE--------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL-- 242 (393)
T ss_dssp EETT--------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG--
T ss_pred CCCC--------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc--
Confidence 9876 56778889999999999999874 7899999999999998754332221110000 00000000
Q ss_pred ecccceeccceeeeecCCEEEEEE-cCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceE
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las-~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (842)
.. ........+...+..+.. .+++..+++++ ++++++||+.+++....+..+........+.+
T Consensus 243 ---~~-~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~----------- 307 (393)
T 4gq1_A 243 ---PL-VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP----------- 307 (393)
T ss_dssp ---GG-C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSC-----------
T ss_pred ---cc-eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc-----------
Confidence 00 000000011234455554 46777888877 67999999998877665543322111000000
Q ss_pred EEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC-CCc-EEEEeCCCeEEEEcC-CCC
Q 003171 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGN 450 (842)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~-dg~-l~Sgs~DgtIrlWD~-~g~ 450 (842)
.. .. .......+..+.+++ ++. +++|+.||+|++||+ +++
T Consensus 308 --------------------~~-----------~~------~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 308 --------------------NV-----------QG------ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp --------------------SE-----------EE------ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred --------------------cc-----------cc------ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence 00 00 000001111122222 444 567888999999999 788
Q ss_pred eeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC
Q 003171 451 RLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 451 ~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (842)
++..+.+|..+|++++ +||++||+|+.+| |.||.+.
T Consensus 351 ~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 351 SNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 9888899999999886 4899999998655 6677654
No 119
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.89 E-value=3e-21 Score=217.92 Aligned_cols=247 Identities=13% Similarity=0.149 Sum_probs=174.0
Q ss_pred ceeEEEEecC--CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCTE--EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~~--~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
..+.+|+... +.|.+ +.|++|+|||+.+...... ...| ...|.|+.++ +.+|++|
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~-------------------~~~h-~~~v~~~s~~--~~~l~sg 205 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN-------------------MTSH-SARVGSLSWN--SYILSSG 205 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-------------------ECCC-SSCEEEEEEE--TTEEEEE
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE-------------------EeCC-CCceEEEeeC--CCEEEEE
Confidence 3567777653 35555 5699999999987543221 1223 6788888876 5899999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
+.|+++++||..... ..+..+.+|...|..+.++|+|. |++++.|+.|++|+..+++...... ..
T Consensus 206 s~d~~i~~~d~~~~~-------~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~------~~- 271 (420)
T 4gga_A 206 SRSGHIHHHDVRVAE-------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL------QT- 271 (420)
T ss_dssp ETTSEEEEEETTSSS-------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS------EE-
T ss_pred eCCCceeEeeecccc-------eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee------ee-
Confidence 999999999988753 56678899999999999999998 7899999999999997643211000 00
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEe--C-CCcEEEEEccCCcEEEEeecCCceEeeeecccCC
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSA--G-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~--s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (842)
... ....+..+++.+.+. .++++ + |++|++||+.+++++..+..+.+
T Consensus 272 --------~~~----------~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~----------- 322 (420)
T 4gga_A 272 --------FTQ----------HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ----------- 322 (420)
T ss_dssp --------ECC----------CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC-----------
T ss_pred --------ecc----------cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc-----------
Confidence 000 134567777766544 44443 2 67999999999988665543221
Q ss_pred CcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe--CCCe
Q 003171 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG--ANGL 441 (842)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs--~Dgt 441 (842)
+.++.+++++. +++++ .|++
T Consensus 323 ---------------------------------------------------------v~~~~~~~~~~~lv~~sg~~d~~ 345 (420)
T 4gga_A 323 ---------------------------------------------------------VCSILWSPHYKELISGHGFAQNQ 345 (420)
T ss_dssp ---------------------------------------------------------EEEEEEETTTTEEEEEECTTTCC
T ss_pred ---------------------------------------------------------eeeeeecCCCCeEEEEEecCCCE
Confidence 22344555554 55554 7899
Q ss_pred EEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCE
Q 003171 442 LLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV 501 (842)
Q Consensus 442 IrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V 501 (842)
|++||. +++++.++.+|..+|+++++ ||++|++|+.|++|+|||+. ..+.+....|...+
T Consensus 346 I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~ 409 (420)
T 4gga_A 346 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASA 409 (420)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----------
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCc
Confidence 999999 79999999999999999865 79999999999999999985 44555555554433
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.9e-22 Score=232.69 Aligned_cols=122 Identities=10% Similarity=0.060 Sum_probs=89.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC-----cEEEEEEecCCC-EEEeeCCCcE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-----PVLSLCISSYGD-LWSGSEGGGI 264 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~-----~V~slafs~dG~-L~SgS~DgtI 264 (842)
...|.+++|+|+|++||+++.||+|++|+.++ +...+. |.. .|.+++|||||+ |++|+.||+|
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE----------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 56899999999999999999999999999533 445566 765 499999999998 8999999999
Q ss_pred EEEeCCCccc-eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCc
Q 003171 265 KIWPWEAIEK-ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRE 343 (842)
Q Consensus 265 rvWd~~t~~~-~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~ 343 (842)
+|||+.++.. ..++ -.... ++++ ..+ +...|.+++.++++ .++++.|++|++||+.+++
T Consensus 154 kIWd~~~~~l~~~~~----i~l~t---------i~~~--~~g----h~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 154 QFFSIRKNSENTPEF----YFESS---------IRLS--DAG----SKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp EEEECCCCTTTCCCC----EEEEE---------EECS--CTT----CCCCEEEEEEETTE-EEEEETTCCEEEECCCSSS
T ss_pred EEEECCCCccccccc----eeeee---------eecc--ccc----ccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCc
Confidence 9999976421 0000 00000 0000 000 13468889999888 6666778999999998766
No 121
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=8.5e-22 Score=215.90 Aligned_cols=240 Identities=11% Similarity=0.133 Sum_probs=171.6
Q ss_pred eeEEEEec--CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC--CCEEEE
Q 003171 134 FLRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd--g~~LaS 208 (842)
.+.+++.. +..|.++ .|+.|+|||+...... . ......| ..+|.|++|+++ +++|++
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~----------------~~~~~~h-~~~v~~~~~~~~~~~~~l~s 74 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-L----------------IDTLTGH-EGPVWRVDWAHPKFGTILAS 74 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE-E----------------EEEECCC-SSCEEEEEECCGGGCSEEEE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce-e----------------eeEecCC-CCcEEEEEeCCCCCCCEEEE
Confidence 46677765 4455554 6999999998632110 0 0011123 789999999987 999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
|+.||+|++||+.++. ......+.+|...|++++|+|+ +. |++|+.|++|++||+.+........
T Consensus 75 ~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------ 142 (379)
T 3jrp_A 75 CSYDGKVLIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------ 142 (379)
T ss_dssp EETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE------
T ss_pred eccCCEEEEEEcCCCc------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE------
Confidence 9999999999998861 1256778899999999999999 76 7899999999999997642211000
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcC-------------CCCEEEEeC-CCcEEEEEccCCcEEEEeecC
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-------------SRAKVWSAG-FLSFALWDARTRELLKVFNID 351 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-------------~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~ 351 (842)
+.++ ...+.+++..+ ++..+++++ +++|++||++++.....+.
T Consensus 143 -----------~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-- 199 (379)
T 3jrp_A 143 -----------IDAH----------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-- 199 (379)
T ss_dssp -----------EECC----------TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE--
T ss_pred -----------ecCC----------CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE--
Confidence 0011 34566677766 467777766 6799999987654211100
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC-
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID- 430 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d- 430 (842)
..+..|...|.+++++|+
T Consensus 200 -------------------------------------------------------------~~~~~h~~~v~~~~~sp~~ 218 (379)
T 3jrp_A 200 -------------------------------------------------------------STLEGHSDWVRDVAWSPTV 218 (379)
T ss_dssp -------------------------------------------------------------EEECCCSSCEEEEEECCCC
T ss_pred -------------------------------------------------------------EEEecccCcEeEEEECCCC
Confidence 002245566788999998
Q ss_pred --Cc-EEEEeCCCeEEEEcC-CCC---eee--eeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 431 --GM-IWTGGANGLLLQWDP-NGN---RLQ--DFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 431 --g~-l~Sgs~DgtIrlWD~-~g~---~l~--~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
+. |++|+.||+|++||+ .++ ... ....|...|+++++ +|++|++|+.||.|++||+.
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 66 899999999999999 443 222 23348889998864 78999999999999999986
No 122
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.89 E-value=3.1e-21 Score=206.62 Aligned_cols=232 Identities=14% Similarity=0.170 Sum_probs=161.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEE--ecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCC
Q 003171 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS--WQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (842)
Q Consensus 194 V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~--l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (842)
..||++|+++ +||+|. |++||+||+.++ +.+.. +.+|...|++|+|+|+|+ |+|||.||+|++|+++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg--------~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~ 97 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSG--------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTC--------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCC--------CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC
Confidence 4679999875 888775 999999999997 44444 457889999999999998 7899999999999998
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE-EEEe
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL-LKVF 348 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~-l~~l 348 (842)
+++....+.. | ...+.++.. .+..+++++ ++.+++|+..++.. +..+
T Consensus 98 ~~~~~~~~~~-------------------h----------~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~ 146 (318)
T 4ggc_A 98 QQKRLRNMTS-------------------H----------SARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATL 146 (318)
T ss_dssp TTEEEEEEEC-------------------C----------SSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred CceeEEEecC-------------------c----------cceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEE
Confidence 7543322211 1 112222222 344566655 46788888765432 1111
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
..|...+..+.++
T Consensus 147 -------------------------------------------------------------------~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 147 -------------------------------------------------------------------SGHSQEVCGLRWA 159 (318)
T ss_dssp -------------------------------------------------------------------ECCSSCEEEEEEC
T ss_pred -------------------------------------------------------------------cCccCceEEEEEc
Confidence 1233345566677
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCC----eeeeeecCCccEEEEEe--cC-CE--EEEEecCcEEEEEeCCCccccccccc
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGN----RLQDFQYLPFAVQCLCT--FG-SQ--IWVGYMNGIVQVLDLEGNLLGGWVAH 497 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~----~l~~l~~H~~~V~sls~--dG-~~--LasGs~DgtIrlWD~~g~~i~~l~gH 497 (842)
+++. +++++.|++|++||+ +++ .+.....|...|.++.. ++ .. +++|+.+++|++||...........|
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~ 239 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 239 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc
Confidence 7776 889999999999999 554 33455568888998865 33 33 45677899999999885444444567
Q ss_pred ccCEEEEE--eCCCEEEEE--cCCCCeeeccccCCCCCcc
Q 003171 498 SSPVIKMA--VGAGYIFTL--ANHGGIRGWNVTSPGPLDS 533 (842)
Q Consensus 498 ~~~V~sla--~dg~~l~S~--S~DgtIrvWd~~~~~~~d~ 533 (842)
...|..+. ++++.++++ +.|++|++||+.+..++..
T Consensus 240 ~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~ 279 (318)
T 4ggc_A 240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE 279 (318)
T ss_dssp SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE
T ss_pred eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEE
Confidence 77787766 467776654 4899999999887655443
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.2e-22 Score=219.45 Aligned_cols=260 Identities=7% Similarity=0.045 Sum_probs=172.9
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 142 ~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
+..+.+ +.|++|++||+.+..... .+. ..+|.++.++|+ ++||+.|++|++|+.
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~---------------------~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~ 102 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTIT---------------------TIT-TPNPRTGGEHPA---IISRGPCNRLLLLYP 102 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEE---------------------EEE-EECCCTTCCCCS---EEEECSTTEEEEEET
T ss_pred CCEEEEECCCCcEEEEECCCCcEEE---------------------EEe-cCCceeeeeCCc---eEEecCCCeEEEEEc
Confidence 334444 569999999997654321 112 346778888887 999999999999987
Q ss_pred CCCcc-CCCCCcceeEEe-cccCCcEEEEEEec--CCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeecee
Q 003171 221 NARLL-DSDDGFGEVLSW-QAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (842)
Q Consensus 221 ~~g~~-~~~~~~~~~~~l-~gH~~~V~slafs~--dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~ 295 (842)
..... -+....+.+..+ .+|.++|.+++|+| +++ |+||+.||+|++||+.+++.......
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--------------- 167 (343)
T 3lrv_A 103 GNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA--------------- 167 (343)
T ss_dssp TTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC---------------
T ss_pred cCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec---------------
Confidence 64200 000000223333 37889999999999 887 78999999999999976543111100
Q ss_pred ecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEE-EEeecCCceEeeeecccCCCcccccceE
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL-KVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l-~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (842)
+ ....+.++++++++..+++++ +++|++||+++++.+ ..+..
T Consensus 168 ----~---------~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~----------------------- 211 (343)
T 3lrv_A 168 ----K---------SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV----------------------- 211 (343)
T ss_dssp ----C---------SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-----------------------
T ss_pred ----C---------CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-----------------------
Confidence 0 022467788888888998866 689999999887642 22210
Q ss_pred EEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCe
Q 003171 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNR 451 (842)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~ 451 (842)
.|...|.+++|+|+|. |++|+ |++|++||+ ++++
T Consensus 212 -------------------------------------------~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 212 -------------------------------------------DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVG 247 (343)
T ss_dssp -------------------------------------------CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTT
T ss_pred -------------------------------------------cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCc
Confidence 1445677899999998 67888 559999999 6766
Q ss_pred eeeeec---CCccEE--EE--EecCCEEEEEec-CcEEEEEeCCCcccccccccccCEEEEE--e---CCCEEEEEcCCC
Q 003171 452 LQDFQY---LPFAVQ--CL--CTFGSQIWVGYM-NGIVQVLDLEGNLLGGWVAHSSPVIKMA--V---GAGYIFTLANHG 518 (842)
Q Consensus 452 l~~l~~---H~~~V~--sl--s~dG~~LasGs~-DgtIrlWD~~g~~i~~l~gH~~~V~sla--~---dg~~l~S~S~Dg 518 (842)
++++.. |...+. ++ .++|++|++|+. |+.|+||+.+... ..|.. .++..+. . +.+.+++++.|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 248 TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT-KNWTK--DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT-CSEEE--EEEEECCC----CCCCEEEEEEETT
T ss_pred ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc-cceEe--cCceeEecCccccccceeEEEecCC
Confidence 655543 444443 34 457999999998 9999999985211 11211 3344443 2 556888889999
Q ss_pred Ceeecc
Q 003171 519 GIRGWN 524 (842)
Q Consensus 519 tIrvWd 524 (842)
+++++-
T Consensus 325 ~~~~~~ 330 (343)
T 3lrv_A 325 GIAAIL 330 (343)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 988875
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.89 E-value=2.4e-21 Score=218.05 Aligned_cols=266 Identities=11% Similarity=0.059 Sum_probs=193.1
Q ss_pred EEec-CCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCc
Q 003171 138 IVCT-EEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR 214 (842)
Q Consensus 138 l~~~-~~~l~~~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGt 214 (842)
++.+ ++.++++ .|+.|++||+.+...... .....+ ..+ ...|.+++++|+++++++++.|++
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------~~~~~~--~~~-~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL------------SPPEKY--KKK-LGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEEEE------------CCCHHH--HTT-CCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEeee------------cCcccc--ccc-CCceeEEEEcCCCEEEEEECCCCE
Confidence 3444 4466653 367899999976543211 000001 112 668999999999999999999999
Q ss_pred EEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEee
Q 003171 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (842)
Q Consensus 215 IrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~ 292 (842)
|++||+.++ +....+.+|...+.+++|+|+|+ + ++++.|++|++||+.+++....+..
T Consensus 193 v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~------------ 252 (433)
T 3bws_A 193 VHVFDLKTL--------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK------------ 252 (433)
T ss_dssp EEEEETTTC--------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC------------
T ss_pred EEEEECCCc--------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC------------
Confidence 999999886 56777889999999999999997 5 4677899999999976432211110
Q ss_pred ceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC---------CCcEEEEEccCCcEEEEeecCCceEeeeecccC
Q 003171 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---------FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (842)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s---------~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (842)
...+..++.++++..+++++ ++.|++||+.+++++..+..
T Consensus 253 ------------------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~------------- 301 (433)
T 3bws_A 253 ------------------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP------------- 301 (433)
T ss_dssp ------------------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-------------
T ss_pred ------------------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC-------------
Confidence 11255677777777777765 46899999998876443210
Q ss_pred CCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-E-EEEeCCCe
Q 003171 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-I-WTGGANGL 441 (842)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l-~Sgs~Dgt 441 (842)
...+..++++|+|. + ++++.|+.
T Consensus 302 -------------------------------------------------------~~~~~~~~~~~~g~~l~~~~~~~~~ 326 (433)
T 3bws_A 302 -------------------------------------------------------PGNKRHIVSGNTENKIYVSDMCCSK 326 (433)
T ss_dssp -------------------------------------------------------EECEEEEEECSSTTEEEEEETTTTE
T ss_pred -------------------------------------------------------CCCcceEEECCCCCEEEEEecCCCE
Confidence 01133567888885 4 56688999
Q ss_pred EEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEec---------------CcEEEEEeCC-CcccccccccccCEE
Q 003171 442 LLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYM---------------NGIVQVLDLE-GNLLGGWVAHSSPVI 502 (842)
Q Consensus 442 IrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~---------------DgtIrlWD~~-g~~i~~l~gH~~~V~ 502 (842)
|++||+ +++++..+. +...+.++++ +|++|++++. ||.|++||++ ++.+..+.++ ..+.
T Consensus 327 v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~ 404 (433)
T 3bws_A 327 IEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPT 404 (433)
T ss_dssp EEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEE
T ss_pred EEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCc
Confidence 999999 677777775 6777888764 6889998886 5799999986 6777777664 5688
Q ss_pred EEE--eCCCEEEEEc-CCCCeeecccc
Q 003171 503 KMA--VGAGYIFTLA-NHGGIRGWNVT 526 (842)
Q Consensus 503 sla--~dg~~l~S~S-~DgtIrvWd~~ 526 (842)
+++ ++++++++++ .|++|++|++.
T Consensus 405 ~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 405 GLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred eEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 887 4788888776 59999999975
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=4.6e-22 Score=216.72 Aligned_cols=206 Identities=11% Similarity=0.056 Sum_probs=129.8
Q ss_pred CCCeEEEEEcCC----CCEEEEEeC--------------------CCcEEEEECCC-CccCCCCCcceeEEecccCCcEE
Q 003171 191 VSSVMCMVGDEA----SGVVWSGHR--------------------DGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGPVL 245 (842)
Q Consensus 191 ~~~V~~la~dpd----g~~LaSGs~--------------------DGtIrlWdl~~-g~~~~~~~~~~~~~l~gH~~~V~ 245 (842)
.+.|.+|+++|+ ++++++++. |++|++|++.. | +.+.++.+|...|+
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG--------~~~~s~~~~~~~v~ 182 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG--------GGKENQFLMPPEET 182 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS--------CEEEEEEECCCSSC
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC--------ceeeeeccCCCcee
Confidence 457889999999 888888664 88888888844 4 55667788988899
Q ss_pred EEEEec---CCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccce---eeeecCCEEEEE
Q 003171 246 SLCISS---YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF---SSILTSDIKNLL 318 (842)
Q Consensus 246 slafs~---dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~---~~~~s~~v~~la 318 (842)
.++|++ ++. |+|||.|++|||||+.+++...++..+.. ....+ .+.+. ...++.
T Consensus 183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~------------------~v~~v~~vafSpd-G~~lvs 243 (356)
T 2w18_A 183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS------------------YQASVCHKAYSEM-GLLFIV 243 (356)
T ss_dssp EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---------------------CCCEEEEEEET-TEEEEE
T ss_pred eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc------------------ceeeeEEEEECCC-CCEEEE
Confidence 999998 555 78999999999999998765444322111 11111 12121 122222
Q ss_pred EcCCCC--EEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecC
Q 003171 319 SDHSRA--KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS 395 (842)
Q Consensus 319 s~~~~~--~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~ 395 (842)
.+++.. .+++++ +++|++||..+++++.++... + + .
T Consensus 244 ~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~--------~-p-----------------~--------------- 282 (356)
T 2w18_A 244 LSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC--------L-P-----------------P--------------- 282 (356)
T ss_dssp EC------------CCEEEEEEETTTTEEEEEEEEC--------C-C-----------------T---------------
T ss_pred eccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee--------c-c-----------------C---------------
Confidence 222111 245565 579999999999887665310 0 0 0
Q ss_pred cceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEE-E--EEecCCE
Q 003171 396 RNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ-C--LCTFGSQ 471 (842)
Q Consensus 396 ~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~-s--ls~dG~~ 471 (842)
+|...+.+..++ +..+++|+.|++|||||+ +|+++++|.+|...|. + +++||++
T Consensus 283 ---------------------Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~ 340 (356)
T 2w18_A 283 ---------------------GQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSH 340 (356)
T ss_dssp ---------------------TCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSE
T ss_pred ---------------------CCcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCE
Confidence 000000011111 223789999999999999 7999999999987654 3 4568999
Q ss_pred EEEEecCcEEEEEeC
Q 003171 472 IWVGYMNGIVQVLDL 486 (842)
Q Consensus 472 LasGs~DgtIrlWD~ 486 (842)
|++|+.|++|||||.
T Consensus 341 LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 341 LLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEECCCcEEEecC
Confidence 999999999999995
No 126
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.89 E-value=1.7e-21 Score=218.43 Aligned_cols=226 Identities=16% Similarity=0.150 Sum_probs=172.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc-cCCcEEEEEEecCCC-EEEeeCCCcEEEEeCC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-HRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g-H~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (842)
.+.++.+++ +.+++++.||+|++|++.++ +....+.. |.+.|++|+|+|+|+ |++|+.||+|++||+.
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~--------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSG--------SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTC--------CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCC--------cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 355566664 56888999999999999987 44445544 899999999999998 7899999999999997
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccC-CcEEEEe
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART-RELLKVF 348 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~t-g~~l~~l 348 (842)
+++....+.. | ...+.++..+ +..+++++ +++|++||+++ +..+..+
T Consensus 165 ~~~~~~~~~~-------------------~----------~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 213 (401)
T 4aez_A 165 SQTKLRTMAG-------------------H----------QARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTL 213 (401)
T ss_dssp TCCEEEEECC-------------------C----------SSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred CCeEEEEecC-------------------C----------CCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEE
Confidence 6543222211 1 3345666663 45666665 67999999974 3322222
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
..|...|.+++++
T Consensus 214 -------------------------------------------------------------------~~~~~~v~~~~~~ 226 (401)
T 4aez_A 214 -------------------------------------------------------------------QGHSSEVCGLAWR 226 (401)
T ss_dssp -------------------------------------------------------------------ECCSSCEEEEEEC
T ss_pred -------------------------------------------------------------------cCCCCCeeEEEEc
Confidence 1234456778899
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCC-EEEEEe--cCcEEEEEeCC-CcccccccccccC
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGS-QIWVGY--MNGIVQVLDLE-GNLLGGWVAHSSP 500 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~-~LasGs--~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (842)
|++. +++|+.|++|++||+ +++++.++.+|...|.++++ ++. .+++|+ .|++|++||+. ++++..+. |...
T Consensus 227 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~ 305 (401)
T 4aez_A 227 SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQ 305 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSC
T ss_pred CCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCc
Confidence 9887 899999999999999 68899999999999999876 454 677765 79999999987 67777774 6678
Q ss_pred EEEEEe--CCCEEEE--EcCCCCeeeccccC
Q 003171 501 VIKMAV--GAGYIFT--LANHGGIRGWNVTS 527 (842)
Q Consensus 501 V~sla~--dg~~l~S--~S~DgtIrvWd~~~ 527 (842)
|.++++ +++.+++ |+.|+.|++|++.+
T Consensus 306 v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 306 VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp EEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred EEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 999885 7888888 45899999999765
No 127
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.87 E-value=1.6e-20 Score=207.72 Aligned_cols=229 Identities=11% Similarity=0.099 Sum_probs=146.1
Q ss_pred ceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003171 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (842)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~ 310 (842)
..+.++.+|.++|++|+|+|||+ |++|+.| .++||++++.+......
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~------------------------------- 57 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQE------------------------------- 57 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEE-------------------------------
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeee-------------------------------
Confidence 45556789999999999999999 5666655 68999986543221110
Q ss_pred cCCEEEEEEcCCCCEE-EEe-CCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCcccee
Q 003171 311 TSDIKNLLSDHSRAKV-WSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSS 388 (842)
Q Consensus 311 s~~v~~las~~~~~~v-~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s 388 (842)
...+..+.....+..+ .++ ++++|+|||+.+++++..+..+..+ ..+.++...
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v-~~v~~~~~~------------------------ 112 (355)
T 3vu4_A 58 MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPV-KDLFLSREF------------------------ 112 (355)
T ss_dssp CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCE-EEEEECSSE------------------------
T ss_pred cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCce-EEEEEcCCE------------------------
Confidence 0012223333344443 333 3569999999999998887644332 222222110
Q ss_pred eeEeecCcceEEecCCcEEEEee--cC-ccccCC-CceEEEEECCCCcEEE--EeCCCeEEEEcC-CCC-----------
Q 003171 389 FGFFQRSRNAIMGAADAVRRVAA--KG-GFGDDN-RRTEALTTSIDGMIWT--GGANGLLLQWDP-NGN----------- 450 (842)
Q Consensus 389 ~~~~~~~~~~~~g~~~~v~~v~~--~g-~~~~~~-~~v~al~~s~dg~l~S--gs~DgtIrlWD~-~g~----------- 450 (842)
.++...+. .+++. .+ ...... .....+++++ ..++. |+.||+|++||+ +++
T Consensus 113 ---------~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~ 181 (355)
T 3vu4_A 113 ---------IVVSYGDV-ISVFKFGNPWKRITDDIRFGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ 181 (355)
T ss_dssp ---------EEEEETTE-EEEEESSTTCCBSSCCEEEEEEEEEET-TEEEEEESSCTTCEEEEECCC-------------
T ss_pred ---------EEEEEcCE-EEEEECCCCceeeEEeccCCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccc
Confidence 01111111 12221 11 010000 0222345666 55554 578999999999 444
Q ss_pred -----eeeeeecCCccEEEEEe--cCCEEEEEecCcE-EEEEeCC-Cccccccc-c-cccCEEEEEe--CCCEEEEEcCC
Q 003171 451 -----RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGI-VQVLDLE-GNLLGGWV-A-HSSPVIKMAV--GAGYIFTLANH 517 (842)
Q Consensus 451 -----~l~~l~~H~~~V~sls~--dG~~LasGs~Dgt-IrlWD~~-g~~i~~l~-g-H~~~V~sla~--dg~~l~S~S~D 517 (842)
+++++.+|...|+++++ +|++|++|+.|++ |+|||++ ++++.++. + |.+.|+++++ +++++++++.|
T Consensus 182 ~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d 261 (355)
T 3vu4_A 182 KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK 261 (355)
T ss_dssp -----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence 37889999999999865 7899999999998 9999997 78899998 6 9999999985 78899999999
Q ss_pred CCeeeccccCC
Q 003171 518 GGIRGWNVTSP 528 (842)
Q Consensus 518 gtIrvWd~~~~ 528 (842)
++|++||+...
T Consensus 262 ~~v~iw~~~~~ 272 (355)
T 3vu4_A 262 WTLHVFEIFND 272 (355)
T ss_dssp CEEEEEESSCC
T ss_pred CEEEEEEccCC
Confidence 99999998764
No 128
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.86 E-value=5.9e-20 Score=208.29 Aligned_cols=238 Identities=15% Similarity=0.137 Sum_probs=166.5
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~-~LaSGs~DGtIrlWdl~~g~~~ 226 (842)
+.|+.|++||+.+...... ..+ ..........| ..+|.+++++|++. +|++|+.||+|++|++..+..
T Consensus 148 ~~dg~V~vwd~~~~~~~~~--------~~~-~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~- 216 (430)
T 2xyi_A 148 TPSSDVLVFDYTKHPSKPE--------PSG-ECQPDLRLRGH-QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK- 216 (430)
T ss_dssp CSSSCEEEEEGGGSCSSCC--------TTC-CCCCSEEEECC-SSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCB-
T ss_pred CCCCcEEEEECCCcccccC--------ccc-cCCCcEEecCC-CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCC-
Confidence 4588999999965211100 000 00111222234 77899999999988 999999999999999987410
Q ss_pred CCCCcceeEEecccCCcEEEEEEecC-CC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceecc
Q 003171 227 SDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (842)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~ 304 (842)
..........+.+|.+.|.+++|+|+ +. |++|+.|++|++||+.+..... ... .+++|
T Consensus 217 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~-------~~~---------~~~~~---- 276 (430)
T 2xyi_A 217 EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK-------PSH---------TVDAH---- 276 (430)
T ss_dssp GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS-------CSE---------EEECC----
T ss_pred CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc-------cee---------EeecC----
Confidence 00001124567899999999999994 45 6799999999999997642100 000 00111
Q ss_pred ceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccCC-cEEEEeecCCceEeeeecccCCCcccccceEEEEEecCC
Q 003171 305 GFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR-ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSK 381 (842)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~tg-~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~ 381 (842)
...+.++++++.+. .+++++ +++|++||+++. .++.++
T Consensus 277 ------~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~--------------------------------- 317 (430)
T 2xyi_A 277 ------TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF--------------------------------- 317 (430)
T ss_dssp ------SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE---------------------------------
T ss_pred ------CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe---------------------------------
Confidence 45688888888776 566665 689999999763 222221
Q ss_pred CCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEeCCCeEEEEcCCC----------
Q 003171 382 KDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPNG---------- 449 (842)
Q Consensus 382 ~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~~g---------- 449 (842)
..|...|.++.++|++. +++++.|++|++||+..
T Consensus 318 ----------------------------------~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 363 (430)
T 2xyi_A 318 ----------------------------------ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363 (430)
T ss_dssp ----------------------------------ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH
T ss_pred ----------------------------------ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc
Confidence 12344567788999884 78999999999999942
Q ss_pred -----CeeeeeecCCccEEEEEe--cCC-EEEEEecCcEEEEEeCCCc
Q 003171 450 -----NRLQDFQYLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLEGN 489 (842)
Q Consensus 450 -----~~l~~l~~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~g~ 489 (842)
+++..+.+|...|++++. +++ +|++++.||.|+||++...
T Consensus 364 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 667788899999999875 677 9999999999999998643
No 129
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2e-20 Score=227.85 Aligned_cols=240 Identities=11% Similarity=0.141 Sum_probs=170.8
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC--CCEEEE
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd--g~~LaS 208 (842)
.+++++.+ ++.|.+ +.|++|+|||+.+.... + ......| .++|.|++|+|+ +++|+|
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~-~----------------~~~l~~h-~~~V~~l~~s~~~~~~~l~s 72 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-L----------------IDTLTGH-EGPVWRVDWAHPKFGTILAS 72 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE-E----------------EEEECCC-SSCEEEEEECCTTSCSEEEE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc-c----------------ceeccCC-cCceEEEEecCCCCCCEEEE
Confidence 45566654 445555 46999999998632110 0 0011123 789999999988 999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
|+.||+|++||+.++. ......+.+|..+|++++|+|+ |. |++|+.||+|++||+.+........
T Consensus 73 ~s~Dg~I~vwd~~~~~------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~------ 140 (753)
T 3jro_A 73 CSYDGKVLIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------ 140 (753)
T ss_dssp EETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE------
T ss_pred EeCCCeEEEEECCCCc------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE------
Confidence 9999999999998861 1256778899999999999999 77 7899999999999997642211000
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcC-------------CCCEEEEeC-CCcEEEEEccCCcEEEEeecC
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-------------SRAKVWSAG-FLSFALWDARTRELLKVFNID 351 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-------------~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~ 351 (842)
+.+| ...+.++...+ ++..+++++ +++|++||++++.....+.
T Consensus 141 -----------~~~~----------~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~-- 197 (753)
T 3jro_A 141 -----------IDAH----------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-- 197 (753)
T ss_dssp -----------EECC----------SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE--
T ss_pred -----------eecC----------CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee--
Confidence 0011 33456666665 355666665 6899999997753211000
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC-
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID- 430 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d- 430 (842)
..+..|...|.+++++|+
T Consensus 198 -------------------------------------------------------------~~~~~h~~~V~~l~~sp~~ 216 (753)
T 3jro_A 198 -------------------------------------------------------------STLEGHSDWVRDVAWSPTV 216 (753)
T ss_dssp -------------------------------------------------------------EEECCCSSCEEEEEECCCC
T ss_pred -------------------------------------------------------------eeecCCCCcEEEEEeccCC
Confidence 012345566788999999
Q ss_pred --Cc-EEEEeCCCeEEEEcC-CCC-----eeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC
Q 003171 431 --GM-IWTGGANGLLLQWDP-NGN-----RLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 431 --g~-l~Sgs~DgtIrlWD~-~g~-----~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (842)
+. +++|+.||+|++||+ +++ .+.....|...|++++ ++|++|++|+.||.|++||++
T Consensus 217 ~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 66 899999999999999 443 3344456888998876 478999999999999999986
No 130
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.85 E-value=1.2e-18 Score=193.24 Aligned_cols=264 Identities=10% Similarity=0.093 Sum_probs=183.2
Q ss_pred eEEEEec--CCEEEE-e-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEE-EE
Q 003171 135 LRTIVCT--EEQLWA-G-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW-SG 209 (842)
Q Consensus 135 ~~~l~~~--~~~l~~-~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~La-SG 209 (842)
+..++.+ ++.+++ + .|+.|++||+.+..... .+.+...|.+++++|+++.|+ ++
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~---------------------~~~~~~~v~~~~~spdg~~l~~~~ 92 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA---------------------TVPAGSSPQGVAVSPDGKQVYVTN 92 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE---------------------EEECSSSEEEEEECTTSSEEEEEE
T ss_pred cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE---------------------EEECCCCccceEECCCCCEEEEEE
Confidence 4455554 446655 3 68999999997643321 111144899999999999775 55
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecCCCceeeeE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
+.|++|++||+.++ +....+..| ..+.+++|+|+|+ | ++++.|++|++||+.+++....+..
T Consensus 93 ~~~~~v~v~d~~~~--------~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------- 156 (391)
T 1l0q_A 93 MASSTLSVIDTTSN--------TVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV------- 156 (391)
T ss_dssp TTTTEEEEEETTTT--------EEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-------
T ss_pred CCCCEEEEEECCCC--------eEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec-------
Confidence 67799999999986 455555554 4789999999998 6 6899999999999976432211110
Q ss_pred EEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEE-EeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCC
Q 003171 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~-s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (842)
...+..+++++++..++ ++. +++|++||+.+++++..+..+
T Consensus 157 -----------------------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-------------- 199 (391)
T 1l0q_A 157 -----------------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-------------- 199 (391)
T ss_dssp -----------------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--------------
T ss_pred -----------------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC--------------
Confidence 12345677788887774 444 468999999988765443211
Q ss_pred cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe---CCCe
Q 003171 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG---ANGL 441 (842)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs---~Dgt 441 (842)
..+..++++|+|. +++++ .++.
T Consensus 200 ------------------------------------------------------~~~~~~~~~~~g~~l~~~~~~~~~~~ 225 (391)
T 1l0q_A 200 ------------------------------------------------------AAPSGIAVNPEGTKAYVTNVDKYFNT 225 (391)
T ss_dssp ------------------------------------------------------SEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred ------------------------------------------------------CCccceEECCCCCEEEEEecCcCCCc
Confidence 1234567888886 67776 6899
Q ss_pred EEEEcC-CCCeeeeeecCCccEEEEE--ecCCEE-EEEecCcEEEEEeCC-CcccccccccccCEE------E-------
Q 003171 442 LLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQI-WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVI------K------- 503 (842)
Q Consensus 442 IrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~L-asGs~DgtIrlWD~~-g~~i~~l~gH~~~V~------s------- 503 (842)
|++||+ +++++..+..|.. +.+++ ++|++| ++++.|++|++||++ ++++..+..|..+.. .
T Consensus 226 v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (391)
T 1l0q_A 226 VSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVY 304 (391)
T ss_dssp EEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCC
T ss_pred EEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccc
Confidence 999999 6888888887664 56654 578887 566789999999987 777777777655431 1
Q ss_pred ----EEeCC----------CEEEEEcCCCCeeeccccC
Q 003171 504 ----MAVGA----------GYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 504 ----la~dg----------~~l~S~S~DgtIrvWd~~~ 527 (842)
...+. -.+.+.+.|.++++|++..
T Consensus 305 ~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 342 (391)
T 1l0q_A 305 PSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGD 342 (391)
T ss_dssp CBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSS
T ss_pred cccccccccccccccccceEEEEeCCCCceEEEEECCC
Confidence 11111 2355677788888888754
No 131
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.83 E-value=4.4e-19 Score=199.45 Aligned_cols=231 Identities=13% Similarity=0.105 Sum_probs=170.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeE-----EecccCCcEEEEEEecCCC-EEEeeCCCcE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVL-----SWQAHRGPVLSLCISSYGD-LWSGSEGGGI 264 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~-----~l~gH~~~V~slafs~dG~-L~SgS~DgtI 264 (842)
...+.+++++|++.++++++.|++|++||+.++ +... .+.+|.+.|++++|+++|+ +++++.|++|
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v 193 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG--------QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAV 193 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTC--------CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEE
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCC--------eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEE
Confidence 345669999998888889999999999999987 3444 4568999999999999998 5799999999
Q ss_pred EEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEE-EeC-CCcEEEEEccCC
Q 003171 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDARTR 342 (842)
Q Consensus 265 rvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~-s~s-~~tI~lWD~~tg 342 (842)
++||+.+++....+.. + ...+.++++++++..++ ++. +++|++||+.++
T Consensus 194 ~~~d~~~~~~~~~~~~-------------------~----------~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 194 HVFDLKTLAYKATVDL-------------------T----------GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp EEEETTTCCEEEEEEC-------------------S----------SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred EEEECCCceEEEEEcC-------------------C----------CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence 9999976443221110 1 23466788888887775 443 578999999988
Q ss_pred cEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCce
Q 003171 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (842)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (842)
+++..+..+ ..+
T Consensus 245 ~~~~~~~~~--------------------------------------------------------------------~~~ 256 (433)
T 3bws_A 245 LEIRKTDKI--------------------------------------------------------------------GLP 256 (433)
T ss_dssp EEEEECCCC--------------------------------------------------------------------SEE
T ss_pred cEEEEecCC--------------------------------------------------------------------CCc
Confidence 765443211 113
Q ss_pred EEEEECCCCc-EEEEe--------CCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEE-EEEecCcEEEEEeCC-C
Q 003171 423 EALTTSIDGM-IWTGG--------ANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQI-WVGYMNGIVQVLDLE-G 488 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs--------~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~L-asGs~DgtIrlWD~~-g 488 (842)
.+++++|+|. +++++ .|+.|++||+ +++.+..+ .|...+.+++ ++|+++ ++++.|++|++||++ +
T Consensus 257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~ 335 (433)
T 3bws_A 257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK 335 (433)
T ss_dssp EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence 4567888885 67776 5889999999 57666655 4556777775 468755 556789999999997 5
Q ss_pred cccccccccccCEEEEEe--CCCEEEEEcC---------------CCCeeeccccCC
Q 003171 489 NLLGGWVAHSSPVIKMAV--GAGYIFTLAN---------------HGGIRGWNVTSP 528 (842)
Q Consensus 489 ~~i~~l~gH~~~V~sla~--dg~~l~S~S~---------------DgtIrvWd~~~~ 528 (842)
+++..+. |...+.++++ ++++++.++. ||.|++||+.+.
T Consensus 336 ~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 336 KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence 6666664 7778888874 6788887766 579999997653
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.81 E-value=3.4e-18 Score=200.54 Aligned_cols=274 Identities=9% Similarity=-0.028 Sum_probs=182.7
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-ccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC--CCcc
Q 003171 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW--EAIE 273 (842)
Q Consensus 198 a~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~--~t~~ 273 (842)
+++|++.++++++.|++|++||..++ +.+.++. ||. +.+++|+|||+ |++++.|++|++||+ .+++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~--------~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSK--------KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 213 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTC--------CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCc--------eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCc
Confidence 47889999999999999999999987 6677777 454 89999999998 789999999999999 5432
Q ss_pred ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC----CCCEEEEeC--CCcEEEEEccCCcEEEE
Q 003171 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH----SRAKVWSAG--FLSFALWDARTRELLKV 347 (842)
Q Consensus 274 ~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~----~~~~v~s~s--~~tI~lWD~~tg~~l~~ 347 (842)
...++. .......+++++ ++..+++++ +.+|.+||..|++++++
T Consensus 214 ~~~~i~------------------------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~ 263 (543)
T 1nir_A 214 KVAEIK------------------------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI 263 (543)
T ss_dssp EEEEEE------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred EEEEEe------------------------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccccee
Confidence 111110 012356788888 888888887 47999999999999988
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcce-EEecCCcEEE-Eeec-Cc-----cccCC
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNA-IMGAADAVRR-VAAK-GG-----FGDDN 419 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~-~~g~~~~v~~-v~~~-g~-----~~~~~ 419 (842)
+...+.......+.+. .....+.+.+.+... .....++... +... +. ...+.
T Consensus 264 i~~~g~~~~~~~~~~~--------------------~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~ 323 (543)
T 1nir_A 264 VSTRGMTVDTQTYHPE--------------------PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA 323 (543)
T ss_dssp EECCEECSSSCCEESC--------------------CCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECC
T ss_pred ecccCcccCccccccC--------------------CceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccC
Confidence 7643210000000000 000011111111111 1111122111 1110 00 11223
Q ss_pred CceEEEEECCCCc-EEEE-eCCCeEEEEcC-CCCeeeeeec----CCccEEEE-Eec-CCEEEEEe-cCcEEEEEeCC--
Q 003171 420 RRTEALTTSIDGM-IWTG-GANGLLLQWDP-NGNRLQDFQY----LPFAVQCL-CTF-GSQIWVGY-MNGIVQVLDLE-- 487 (842)
Q Consensus 420 ~~v~al~~s~dg~-l~Sg-s~DgtIrlWD~-~g~~l~~l~~----H~~~V~sl-s~d-G~~LasGs-~DgtIrlWD~~-- 487 (842)
..+..++|+|||+ ++++ ..+++|++||+ +|+++.++.. |......+ .++ |..++++. .|++|.|||+.
T Consensus 324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~ 403 (543)
T 1nir_A 324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK 403 (543)
T ss_dssp SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCC
Confidence 4455789999998 5544 46889999999 7899888874 76554444 456 44555554 58999999974
Q ss_pred ------CcccccccccccCEEEEE--eCCCEEEEEc-------CCCCeeeccccCCCCC
Q 003171 488 ------GNLLGGWVAHSSPVIKMA--VGAGYIFTLA-------NHGGIRGWNVTSPGPL 531 (842)
Q Consensus 488 ------g~~i~~l~gH~~~V~sla--~dg~~l~S~S-------~DgtIrvWd~~~~~~~ 531 (842)
+++++++.+|.+.+..|+ +++++|++++ .+++|++||+.+....
T Consensus 404 ~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 404 NHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 468899999998888777 5888999887 3789999999886654
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.79 E-value=6e-17 Score=189.87 Aligned_cols=307 Identities=11% Similarity=0.037 Sum_probs=192.0
Q ss_pred EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-
Q 003171 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM- 220 (842)
Q Consensus 144 ~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl- 220 (842)
.+++ +.|++|++||..+...... +.....+.+++++|||++|++++.|++|++||+
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~~~~~~---------------------i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSKKIVKV---------------------IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEE---------------------EECSTTEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred EEEEEEcCCCeEEEEECCCceEEEE---------------------EecCcccceEEECCCCCEEEEECCCCeEEEEECc
Confidence 5555 3588999999876543221 110223889999999999999999999999999
Q ss_pred -CCCccCCCCCcceeEEecccCCcEEEEEEec----CCC-EEEee-CCCcEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 221 -NARLLDSDDGFGEVLSWQAHRGPVLSLCISS----YGD-LWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 221 -~~g~~~~~~~~~~~~~l~gH~~~V~slafs~----dG~-L~SgS-~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
.++ +.+.++.. ...+.+|+||| ||+ |++++ .+++|+|||..+++....+...
T Consensus 209 ~~t~--------~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~------------ 267 (543)
T 1nir_A 209 AKEP--------TKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR------------ 267 (543)
T ss_dssp SSSC--------EEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC------------
T ss_pred CCCC--------cEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc------------
Confidence 665 55666664 45679999999 998 67776 5899999999775432222110
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEE-EEeC-CCcEEEEEccCCcEEE--EeecCCceEeeeecccCCCcccc
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV-WSAG-FLSFALWDARTRELLK--VFNIDGQIENRVDMSLLPDFAME 369 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v-~s~s-~~tI~lWD~~tg~~l~--~l~~~~~~~~~~~~s~~~~~~~~ 369 (842)
+. ...+..+.+.+.+..+++++++..+ ++.. +++|.+||+.+++.++ .+. .+.....
T Consensus 268 -----g~-~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~------------ 328 (543)
T 1nir_A 268 -----GM-TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHD------------ 328 (543)
T ss_dssp -----EE-CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCC------------
T ss_pred -----Cc-ccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccC------------
Confidence 00 0000001112346667777765544 3443 4689999998876544 222 1111111
Q ss_pred cceEEEEEecCCCCccceeeeEeecCcceEEec-CC-cEEEEee-cCcc--------ccCCCceEEEEECCC-CcEE-EE
Q 003171 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-AD-AVRRVAA-KGGF--------GDDNRRTEALTTSID-GMIW-TG 436 (842)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~-~~-~v~~v~~-~g~~--------~~~~~~v~al~~s~d-g~l~-Sg 436 (842)
+.|.++++..+++. .+ .+..+.. .+.+ ..|......+ ++|+ |.++ ++
T Consensus 329 -------------------~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~ 388 (543)
T 1nir_A 329 -------------------GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTS 388 (543)
T ss_dssp -------------------EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEE
T ss_pred -------------------ceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEec
Confidence 12222222222211 11 1211111 1111 1133333333 4565 6654 55
Q ss_pred e-CCCeEEEEcC-C-------CCeeeeeecCCccEEEEE--ecCCEEEEEe-------cCcEEEEEeCC-Cccc-cc---
Q 003171 437 G-ANGLLLQWDP-N-------GNRLQDFQYLPFAVQCLC--TFGSQIWVGY-------MNGIVQVLDLE-GNLL-GG--- 493 (842)
Q Consensus 437 s-~DgtIrlWD~-~-------g~~l~~l~~H~~~V~sls--~dG~~LasGs-------~DgtIrlWD~~-g~~i-~~--- 493 (842)
+ .|++|++||. + +++++++.+|...+..+. ++|++||+++ .+++|.|||++ ++.. ..
T Consensus 389 ~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v 468 (543)
T 1nir_A 389 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI 468 (543)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH
T ss_pred cCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeec
Confidence 4 5899999999 5 789999999988877664 6899999987 37899999987 4443 33
Q ss_pred -----ccccccCEEEEE--eCCCEEEEE-----cCCCCeeeccccCCCCC
Q 003171 494 -----WVAHSSPVIKMA--VGAGYIFTL-----ANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 494 -----l~gH~~~V~sla--~dg~~l~S~-----S~DgtIrvWd~~~~~~~ 531 (842)
+..|...|..++ ++|+.++.+ +.|++|.|||..+...+
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 469 AEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp HHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred hhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 245677888887 488888744 35899999998775443
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.78 E-value=7.6e-17 Score=182.36 Aligned_cols=210 Identities=10% Similarity=-0.025 Sum_probs=155.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCCc--
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGG-- 263 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DG---tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dgt-- 263 (842)
...|.+++|+|+|+.|++++.|+ +|++||+.++ + ...+.+|.+.|.+++|+|||+ |+ +++.|+.
T Consensus 178 ~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg--------~-~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~ 248 (415)
T 2hqs_A 178 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--------A-VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN 248 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--------C-EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--------c-EEEeecCCCcccCEEEcCCCCEEEEEEecCCCce
Confidence 67899999999999999999886 9999999986 3 346788999999999999998 65 7777765
Q ss_pred EEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--C--cEEEEEc
Q 003171 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--L--SFALWDA 339 (842)
Q Consensus 264 IrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~--tI~lWD~ 339 (842)
|++||+.+++. ..+.. + ...+..+++++++..|+.+++ + .|.+||+
T Consensus 249 i~~~d~~~~~~-~~l~~-------------------~----------~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 249 LYVMDLASGQI-RQVTD-------------------G----------RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp EEEEETTTCCE-EECCC-------------------C----------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred EEEEECCCCCE-EeCcC-------------------C----------CCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 99999876432 11111 1 224556777888877766553 2 5777788
Q ss_pred cCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCC
Q 003171 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (842)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (842)
.++++. .+. .+.
T Consensus 299 ~~~~~~-~l~-------------------------------------------------------------------~~~ 310 (415)
T 2hqs_A 299 NGGAPQ-RIT-------------------------------------------------------------------WEG 310 (415)
T ss_dssp TSSCCE-ECC-------------------------------------------------------------------CSS
T ss_pred CCCCEE-EEe-------------------------------------------------------------------cCC
Confidence 776531 110 011
Q ss_pred CceEEEEECCCCc-EEEEeCC---CeEEEEcCC-CCeeeeeecCCccEEEE--EecCCEEEEEecCc---EEEEEeCCCc
Q 003171 420 RRTEALTTSIDGM-IWTGGAN---GLLLQWDPN-GNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNG---IVQVLDLEGN 489 (842)
Q Consensus 420 ~~v~al~~s~dg~-l~Sgs~D---gtIrlWD~~-g~~l~~l~~H~~~V~sl--s~dG~~LasGs~Dg---tIrlWD~~g~ 489 (842)
..+.+++++|||+ |++++.+ ..|++||+. +++ ..+..|. .+.++ +++|++|++++.++ .|++||++|+
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 2344678899998 6666653 589999994 554 5566664 67766 45899999988876 8999999998
Q ss_pred ccccccccccCEEEEEeCCC
Q 003171 490 LLGGWVAHSSPVIKMAVGAG 509 (842)
Q Consensus 490 ~i~~l~gH~~~V~sla~dg~ 509 (842)
....+.+|.+.|.++++.+.
T Consensus 389 ~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 389 FKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp CEEECCCSSSEEEEEEECCC
T ss_pred cEEEeeCCCCCCcCCccccc
Confidence 88999999999999998764
No 135
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.77 E-value=2.7e-17 Score=186.10 Aligned_cols=216 Identities=10% Similarity=-0.035 Sum_probs=155.0
Q ss_pred CCEEEEEeCC------CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCC---cEEEEeCCCc
Q 003171 203 SGVVWSGHRD------GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG---GIKIWPWEAI 272 (842)
Q Consensus 203 g~~LaSGs~D------GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dg---tIrvWd~~t~ 272 (842)
++.|+.++.+ ++|++||+++ .....+.+|.+.|.+++|||||+ |++++.|+ +|++||+.++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g---------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG---------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS---------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC---------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence 5666666654 7999999986 34677889999999999999998 78888875 9999999775
Q ss_pred cceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEE-EeC-C--CcEEEEEccCCcEEEEe
Q 003171 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-F--LSFALWDARTRELLKVF 348 (842)
Q Consensus 273 ~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~-s~s-~--~tI~lWD~~tg~~l~~l 348 (842)
+.. .+.. + ...+..+++++++.+|+ +++ + ..|.+||+.++++. .+
T Consensus 214 ~~~-~l~~-------------------~----------~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l 262 (415)
T 2hqs_A 214 AVR-QVAS-------------------F----------PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QV 262 (415)
T ss_dssp CEE-EEEC-------------------C----------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EC
T ss_pred cEE-Eeec-------------------C----------CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eC
Confidence 421 1110 1 23456778888888666 544 3 35999999887652 22
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
. .+...+.+++|+
T Consensus 263 ~-------------------------------------------------------------------~~~~~~~~~~~s 275 (415)
T 2hqs_A 263 T-------------------------------------------------------------------DGRSNNTEPTWF 275 (415)
T ss_dssp C-------------------------------------------------------------------CCSSCEEEEEEC
T ss_pred c-------------------------------------------------------------------CCCCcccceEEC
Confidence 1 111234567899
Q ss_pred CCCc-EEEEeC-CC--eEEEEcCCCCeeeeeecCCccEEEEE--ecCCEEEEEecC---cEEEEEeCCCccccccccccc
Q 003171 429 IDGM-IWTGGA-NG--LLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMN---GIVQVLDLEGNLLGGWVAHSS 499 (842)
Q Consensus 429 ~dg~-l~Sgs~-Dg--tIrlWD~~g~~l~~l~~H~~~V~sls--~dG~~LasGs~D---gtIrlWD~~g~~i~~l~gH~~ 499 (842)
|||+ |++++. ++ .|.+||+.+..+..+..|...+.+++ +||++|++++.+ ..|++||+++.....+..|.
T Consensus 276 pdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~- 354 (415)
T 2hqs_A 276 PDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF- 354 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-
T ss_pred CCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-
Confidence 9998 777775 44 68888995444556666777887664 689999988864 69999999854445566665
Q ss_pred CEEEEE--eCCCEEEEEcCCC---Ceeecccc
Q 003171 500 PVIKMA--VGAGYIFTLANHG---GIRGWNVT 526 (842)
Q Consensus 500 ~V~sla--~dg~~l~S~S~Dg---tIrvWd~~ 526 (842)
.+.+++ +||+.|++++.|+ .|.+||+.
T Consensus 355 ~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 355 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 777776 5889999988887 69999865
No 136
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.76 E-value=5.1e-16 Score=195.73 Aligned_cols=360 Identities=9% Similarity=-0.046 Sum_probs=217.7
Q ss_pred ceeEEEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC
Q 003171 133 CFLRTIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 133 ~~~~~l~~~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D 212 (842)
.+++..+.+++.|....++.|++|+++..... .++ .+ ...|.+++|||||++||+++.+
T Consensus 15 ~~~~~~~~S~~~iaf~~~~~l~~~~~~gg~~~------------------~lt--~~-~~~v~~~~~SPDG~~la~~s~~ 73 (1045)
T 1k32_A 15 NLLLNPDIHGDRIIFVCCDDLWEHDLKSGSTR------------------KIV--SN-LGVINNARFFPDGRKIAIRVMR 73 (1045)
T ss_dssp CCCEEEEEETTEEEEEETTEEEEEETTTCCEE------------------EEE--CS-SSEEEEEEECTTSSEEEEEEEE
T ss_pred ceEeCcEEeCCEEEEEECCcEEEEECCCCcEE------------------Eee--eC-CCcccCeEECCCCCEEEEEEee
Confidence 45666666677666666689999998753221 111 12 6689999999999999988754
Q ss_pred ----C--cEEEEECCCCccCCCCCcceeEEecccCCcE-------EEEEEecCCC-EEEeeCC----C--cEEEEeCCCc
Q 003171 213 ----G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPV-------LSLCISSYGD-LWSGSEG----G--GIKIWPWEAI 272 (842)
Q Consensus 213 ----G--tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V-------~slafs~dG~-L~SgS~D----g--tIrvWd~~t~ 272 (842)
+ .|++|++.++ ....+.+|...+ .+++|||||+ +++++.| + .|.+|++.++
T Consensus 74 ~~~~~~~~i~~~d~~~g---------~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g 144 (1045)
T 1k32_A 74 GSSLNTADLYFYNGENG---------EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI 144 (1045)
T ss_dssp STTCCEEEEEEEETTTT---------EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT
T ss_pred ccCCCCCeEEEEECCCC---------CeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCC
Confidence 3 7999999885 367788999998 9999999999 4577755 3 5777777654
Q ss_pred cceeecCCCceeeeEEE----Eeec------------------e-eecccceeccceeeeecCCEEEEEEcCCCCEEEEe
Q 003171 273 EKALSLKPEERHTAALI----VERS------------------Y-IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA 329 (842)
Q Consensus 273 ~~~l~~~~~~~~~~~l~----~~~s------------------~-~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~ 329 (842)
+.. .+........+++ +..+ + +...+ +..... ..+...+..+..+++ ..++++
T Consensus 145 ~~~-~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~l-~~~~~~v~~~~~s~d-~l~~~~ 220 (1045)
T 1k32_A 145 NFV-PLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKI-VDMSTHVSSPVIVGH-RIYFIT 220 (1045)
T ss_dssp EEE-ECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEE-ECCSSCCEEEEEETT-EEEEEE
T ss_pred CeE-EecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCC-CCeEEC-cCCCCcccceEEeCC-EEEEEE
Confidence 321 1111111111100 0000 0 00000 000000 011234445555544 344444
Q ss_pred C-CCcEEEEEccC-CcEEEEeecCCceEeeeecccCCCccc-ccceEEEEEecC-------CC------------Cccce
Q 003171 330 G-FLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAM-EDEFKTKIVTSS-------KK------------DKAQS 387 (842)
Q Consensus 330 s-~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~s~~-------~~------------~~~~~ 387 (842)
+ +++++||++.. +...+.+..+... ..+.+++.....+ ..+..++++... .. .....
T Consensus 221 ~~dg~~~l~~~~~~g~~~~~l~~~~~~-~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~ 299 (1045)
T 1k32_A 221 DIDGFGQIYSTDLDGKDLRKHTSFTDY-YPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKF 299 (1045)
T ss_dssp CTTSSCEEEEEETTSCSCEECCCCCSS-CEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGG
T ss_pred eccCceEEEEEeCCCCcceEecCCCCc-ceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccc
Confidence 4 46788887653 3333444433321 1223333322110 001112222210 00 01234
Q ss_pred eeeEe-ecCcceEEecCCcEEEEeec-C---ccccCCC-ceEEEEECCCCc-EEEEeCCCeEE-EEcCCCCeeeeeecCC
Q 003171 388 SFGFF-QRSRNAIMGAADAVRRVAAK-G---GFGDDNR-RTEALTTSIDGM-IWTGGANGLLL-QWDPNGNRLQDFQYLP 459 (842)
Q Consensus 388 s~~~~-~~~~~~~~g~~~~v~~v~~~-g---~~~~~~~-~v~al~~s~dg~-l~Sgs~DgtIr-lWD~~g~~l~~l~~H~ 459 (842)
.+.|+ +++..++.+....++.+... + .+..+.. .+..++++ ||+ +++++.++.|. +||+.+.....+.+|.
T Consensus 300 ~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~ 378 (1045)
T 1k32_A 300 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENL 378 (1045)
T ss_dssp EEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCC
T ss_pred eeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCc
Confidence 67788 88776666654444444332 2 1333445 78889999 887 78888888888 9999655555566888
Q ss_pred ccEEEEE--ecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCC----------Ceeecc
Q 003171 460 FAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHG----------GIRGWN 524 (842)
Q Consensus 460 ~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~Dg----------tIrvWd 524 (842)
..+.+++ +||++|++++.+++|++||++ |++...+.+|.+.|.+++ +||+++++++.++ .|++||
T Consensus 379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 8888765 589999999999999999997 666666668999888876 5899999887654 899999
Q ss_pred ccCC
Q 003171 525 VTSP 528 (842)
Q Consensus 525 ~~~~ 528 (842)
+.+.
T Consensus 459 ~~~g 462 (1045)
T 1k32_A 459 MEGR 462 (1045)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8753
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.72 E-value=9e-16 Score=165.86 Aligned_cols=263 Identities=9% Similarity=0.021 Sum_probs=169.4
Q ss_pred CCEEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC-CCcEEEE
Q 003171 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR-DGRIMCW 218 (842)
Q Consensus 142 ~~~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~-DGtIrlW 218 (842)
.+.+|+ +.++.|++||+++...... + ..+ ..++ +++++|+|+.|+.++. ++.|.+|
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~-----------------~--~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~ 67 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQ-----------------I--TLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQI 67 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEE-----------------E--ECC-CCEE-EEEECSSSCEEEEEESTTCEEEEE
T ss_pred CCEEEEEecCCCeEEEEeCcccceeee-----------------E--Ecc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEE
Confidence 456665 4588999999976543211 1 111 3455 9999999997777665 8999999
Q ss_pred ECCCCccCCCCCcce-eEEecccCCcEEEEEEecCCC-EEEeeCCC---cEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 219 KMNARLLDSDDGFGE-VLSWQAHRGPVLSLCISSYGD-LWSGSEGG---GIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 219 dl~~g~~~~~~~~~~-~~~l~gH~~~V~slafs~dG~-L~SgS~Dg---tIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
|+.++ +. ...+..|..++.+++|+|+|+ |+++..++ +|++||+.+++....+..
T Consensus 68 d~~~~--------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~------------- 126 (331)
T 3u4y_A 68 ETQLE--------PPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI------------- 126 (331)
T ss_dssp ECSSS--------SCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-------------
T ss_pred ECCCC--------ceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-------------
Confidence 99987 34 566677777777799999998 66554443 999999976432111100
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCc-EEEEEccCCcEEEEeecCCceEeeeecccCCCccccc
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLS-FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~t-I~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (842)
......++.++++..++.+. +.. |.+|++.....+.... .
T Consensus 127 -----------------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--~------------------ 169 (331)
T 3u4y_A 127 -----------------PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG--Q------------------ 169 (331)
T ss_dssp -----------------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--E------------------
T ss_pred -----------------CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC--C------------------
Confidence 12345677788877555443 356 9999986532211000 0
Q ss_pred ceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe-CCCeEEEEcC-
Q 003171 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP- 447 (842)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs-~DgtIrlWD~- 447 (842)
+ ..........++++|||+ ++.++ .++.|++||+
T Consensus 170 --~-----------------------------------------~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 170 --E-----------------------------------------FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp --E-----------------------------------------EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred --c-----------------------------------------cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 0 000112245688999997 65544 6889999999
Q ss_pred CCCe---eeeeecCCccEEE--EEecCCEEEEEe-cCcEEEEEeCC-Ccc--ccccccc----ccCE-----EEEEeCCC
Q 003171 448 NGNR---LQDFQYLPFAVQC--LCTFGSQIWVGY-MNGIVQVLDLE-GNL--LGGWVAH----SSPV-----IKMAVGAG 509 (842)
Q Consensus 448 ~g~~---l~~l~~H~~~V~s--ls~dG~~LasGs-~DgtIrlWD~~-g~~--i~~l~gH----~~~V-----~sla~dg~ 509 (842)
+++. +..+..+ ..+.+ +++||++|++++ .++.|.+||++ +++ +..+..+ ...+ .++.+|++
T Consensus 207 ~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 285 (331)
T 3u4y_A 207 NPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET 285 (331)
T ss_dssp STTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS
T ss_pred CCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC
Confidence 6777 7777654 34444 456899887765 47899999987 554 3322222 2222 24457888
Q ss_pred EEE-EEcCCCCeeeccccC
Q 003171 510 YIF-TLANHGGIRGWNVTS 527 (842)
Q Consensus 510 ~l~-S~S~DgtIrvWd~~~ 527 (842)
+++ +.+.+++|++||+..
T Consensus 286 ~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 286 KLFISANISRELKVFTISG 304 (331)
T ss_dssp EEEEEETTTTEEEEEETTS
T ss_pred EEEEecCCCCcEEEEEecC
Confidence 876 555677999999865
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.71 E-value=1.3e-15 Score=183.89 Aligned_cols=284 Identities=8% Similarity=-0.030 Sum_probs=179.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCccCCCCCcceeEEecccC-----------------------
Q 003171 191 VSSVMCMVGDEASGVVWSGHR-DG-----RIMCWKMNARLLDSDDGFGEVLSWQAHR----------------------- 241 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~-DG-----tIrlWdl~~g~~~~~~~~~~~~~l~gH~----------------------- 241 (842)
...|.+++|+|||++|++++. || +|++||+.++ +....+.+|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG--------QTRLLVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC--------CEEEEECGGGTC--------------------C
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC--------ceeEccchhhcccccccccchhhhhhhhhhhcc
Confidence 347899999999999999998 88 9999999987 4444444443
Q ss_pred -CcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcc--ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEE
Q 003171 242 -GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE--KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNL 317 (842)
Q Consensus 242 -~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~--~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~l 317 (842)
..|.+++|||||+ |++++. ++|++||+.++. ....+.. + ...+..+
T Consensus 108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~-------------------~----------~~~~~~~ 157 (741)
T 2ecf_A 108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTH-------------------G----------EGFATDA 157 (741)
T ss_dssp CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCC-------------------S----------SSCEEEE
T ss_pred ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEccc-------------------C----------Ccccccc
Confidence 2388999999998 677775 999999997751 1111111 0 2346678
Q ss_pred EEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCc-e---------------EeeeecccCCCcccccceEEEEEecCC
Q 003171 318 LSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQ-I---------------ENRVDMSLLPDFAMEDEFKTKIVTSSK 381 (842)
Q Consensus 318 as~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~-~---------------~~~~~~s~~~~~~~~~~~~~~~~s~~~ 381 (842)
+.++++.+|+.++++.|.+||+.+++.......+.. + ...+.++++....+ ......
T Consensus 158 ~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~-------~~~~d~ 230 (741)
T 2ecf_A 158 KLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIA-------YARIDE 230 (741)
T ss_dssp EECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEE-------EEEEEC
T ss_pred cCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEE-------EEEEcC
Confidence 888999988888888999999999987654432221 1 01223333222111 000000
Q ss_pred C-Cc------------cceeeeEeecCcceEEecCC---cEEEEee-c-Cccc------cCCCceEEEEECCCCc-EEEE
Q 003171 382 K-DK------------AQSSFGFFQRSRNAIMGAAD---AVRRVAA-K-GGFG------DDNRRTEALTTSIDGM-IWTG 436 (842)
Q Consensus 382 ~-~~------------~~~s~~~~~~~~~~~~g~~~---~v~~v~~-~-g~~~------~~~~~v~al~~s~dg~-l~Sg 436 (842)
. .. ....+.+.. .|... .++.+.. . +... .+...+..+++ |||+ |+++
T Consensus 231 ~~~~~~~~~~~~p~~~~~~~~~~~~------~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~ 303 (741)
T 2ecf_A 231 SPVPVQKRYEVYADRTDVIEQRYPA------AGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQ 303 (741)
T ss_dssp TTSCEEEEEEECSSCEEEEEEECCB------TTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEE
T ss_pred CCCceEecCCCCCCcccceEeecCC------CCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEE
Confidence 0 00 000000000 00001 1111211 1 2111 24456788999 9998 6655
Q ss_pred eC-----CCeEEEEcC-CCCeeeeeecCCc----cEE--EEEecCCEEEEEecCcEEEEEe--CCCcccccccccccCEE
Q 003171 437 GA-----NGLLLQWDP-NGNRLQDFQYLPF----AVQ--CLCTFGSQIWVGYMNGIVQVLD--LEGNLLGGWVAHSSPVI 502 (842)
Q Consensus 437 s~-----DgtIrlWD~-~g~~l~~l~~H~~----~V~--sls~dG~~LasGs~DgtIrlWD--~~g~~i~~l~gH~~~V~ 502 (842)
+. +..|++||+ +|++...+..|.. .+. ++++||+++++++.||+++||. ++++ ...+..|...|.
T Consensus 304 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~ 382 (741)
T 2ecf_A 304 RQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVD 382 (741)
T ss_dssp EEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEE
T ss_pred EecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEE
Confidence 43 568999999 6787777766543 223 4567899999999999777775 4567 788888988887
Q ss_pred EE---EeCCCEEE-EEcCCC--CeeeccccC
Q 003171 503 KM---AVGAGYIF-TLANHG--GIRGWNVTS 527 (842)
Q Consensus 503 sl---a~dg~~l~-S~S~Dg--tIrvWd~~~ 527 (842)
++ .+|++.++ +++.|+ ++++|++..
T Consensus 383 ~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 383 ELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred eEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 65 35888765 566666 899999764
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.71 E-value=1.3e-15 Score=159.91 Aligned_cols=243 Identities=10% Similarity=0.017 Sum_probs=166.9
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA-RLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~-g~~~ 226 (842)
+.|+.|++||+.+..... +. .+ ...|.+++++|+|++|++++ ++.|++||+.+ +
T Consensus 19 ~~~~~i~~~d~~~~~~~~------------------~~--~~-~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~--- 73 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRV------------------VW--QT-PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP--- 73 (297)
T ss_dssp CCCEEEEEEETTTTEEEE------------------EE--EE-SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC---
T ss_pred CcceeEEEEeCCCCceee------------------ec--cC-CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC---
Confidence 357899999997643211 11 23 67899999999999999987 78999999988 6
Q ss_pred CCCCcceeEEeccc-CCcEEEEEEecCCC-EEEee--CCCcEEEEeCCCccce-eecCCCceeeeEEEEeeceeecccce
Q 003171 227 SDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGS--EGGGIKIWPWEAIEKA-LSLKPEERHTAALIVERSYIDLRSHL 301 (842)
Q Consensus 227 ~~~~~~~~~~l~gH-~~~V~slafs~dG~-L~SgS--~DgtIrvWd~~t~~~~-l~~~~~~~~~~~l~~~~s~~~l~~~~ 301 (842)
+......+| ...|.+++|+|+|+ |++++ .++.++||.++..... ..+..
T Consensus 74 -----~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------------- 127 (297)
T 2ojh_A 74 -----SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTK--------------------- 127 (297)
T ss_dssp -----SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCS---------------------
T ss_pred -----CceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeec---------------------
Confidence 444455566 47899999999998 67777 4567777776431111 11100
Q ss_pred eccceeeeecCCEEEEEEcCCCCEEE-EeC-CCcEEEEEcc--CCcEEEEeecCCceEeeeecccCCCcccccceEEEEE
Q 003171 302 SVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDAR--TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (842)
Q Consensus 302 ~~~~~~~~~s~~v~~las~~~~~~v~-s~s-~~tI~lWD~~--tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (842)
...+..++.++++..++ ++. ++.++||++. +++. ..
T Consensus 128 ---------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~------------------------------ 167 (297)
T 2ojh_A 128 ---------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TR------------------------------ 167 (297)
T ss_dssp ---------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EE------------------------------
T ss_pred ---------CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eE------------------------------
Confidence 11245566777777665 443 5678888753 2221 00
Q ss_pred ecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe-CCCeEEEEcC--CCCeee
Q 003171 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP--NGNRLQ 453 (842)
Q Consensus 378 s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs-~DgtIrlWD~--~g~~l~ 453 (842)
+..+...+..++++|+|. ++.++ .++.+++|++ .+..+.
T Consensus 168 -------------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~ 210 (297)
T 2ojh_A 168 -------------------------------------LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE 210 (297)
T ss_dssp -------------------------------------CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE
T ss_pred -------------------------------------cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE
Confidence 111223455678899997 66555 5889999987 467788
Q ss_pred eeecCCccEEEEE--ecCCEEEEEecC-----------cEEEEEeCC-Ccc--cccccccccCEEEEE--eCCCEEEEEc
Q 003171 454 DFQYLPFAVQCLC--TFGSQIWVGYMN-----------GIVQVLDLE-GNL--LGGWVAHSSPVIKMA--VGAGYIFTLA 515 (842)
Q Consensus 454 ~l~~H~~~V~sls--~dG~~LasGs~D-----------gtIrlWD~~-g~~--i~~l~gH~~~V~sla--~dg~~l~S~S 515 (842)
.+..|...+.+++ ++|++|++++.+ +.|.+||++ ++. +..+.+|...|.+++ +++++|++++
T Consensus 211 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 211 RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp ECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred EEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEE
Confidence 8888888888765 589999888865 679999997 443 445558888888776 5788898887
Q ss_pred CCC
Q 003171 516 NHG 518 (842)
Q Consensus 516 ~Dg 518 (842)
.|.
T Consensus 291 ~~~ 293 (297)
T 2ojh_A 291 YFP 293 (297)
T ss_dssp ECC
T ss_pred ecc
Confidence 664
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.68 E-value=2.6e-14 Score=155.20 Aligned_cols=263 Identities=9% Similarity=0.066 Sum_probs=172.8
Q ss_pred eEEEEec--CCEEEEec--------CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCC
Q 003171 135 LRTIVCT--EEQLWAGG--------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG 204 (842)
Q Consensus 135 ~~~l~~~--~~~l~~~~--------D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~ 204 (842)
...++.+ ++.+|++. ++.|.+||.++...... + . . ...+.+++++|+|+
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-----------------~-~--~-~~~~~~~~~s~dg~ 101 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-----------------I-H--N-DLKPFGATINNTTQ 101 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-----------------E-E--E-SSCCCSEEEETTTT
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-----------------E-e--c-CCCcceEEECCCCC
Confidence 4445544 55788754 66899999976543211 1 1 1 23467789999999
Q ss_pred EEE-EEeCCCcEEEEECCCCccCCCCCcceeEEecccCC---------cEEEEEEecCCC-EEEee--CCCcEEEEeCCC
Q 003171 205 VVW-SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---------PVLSLCISSYGD-LWSGS--EGGGIKIWPWEA 271 (842)
Q Consensus 205 ~La-SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~---------~V~slafs~dG~-L~SgS--~DgtIrvWd~~t 271 (842)
.++ ++..++.|.+||..++ +....+..|.. .+.+++|+|+|+ ++.++ .++.|.+||..+
T Consensus 102 ~l~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 102 TLWFGNTVNSAVTAIDAKTG--------EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp EEEEEETTTTEEEEEETTTC--------CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred EEEEEecCCCEEEEEeCCCC--------eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence 555 4556799999999987 45555554432 278999999998 65544 588999999976
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeec
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (842)
++....+... ......++.++++..++.+. ++.|.+||+.+++.+..+..
T Consensus 174 ~~~~~~~~~~-----------------------------~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~ 224 (353)
T 3vgz_A 174 IKLKTAIQNT-----------------------------GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKL 224 (353)
T ss_dssp TEEEEEECCC-----------------------------CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred CceEEEecCC-----------------------------CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc
Confidence 5432211100 11123455667777777665 46899999999887655432
Q ss_pred CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC
Q 003171 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (842)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d 430 (842)
... .+...+..++++||
T Consensus 225 ~~~---------------------------------------------------------------~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 225 LDD---------------------------------------------------------------GKEHFFINISLDTA 241 (353)
T ss_dssp CCS---------------------------------------------------------------SSCCCEEEEEEETT
T ss_pred CCC---------------------------------------------------------------CCCcccceEEECCC
Confidence 100 01122445778888
Q ss_pred Cc-EEEEeC-CCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEe-cCcEEEEEeCC-CcccccccccccCEEEEE
Q 003171 431 GM-IWTGGA-NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAHSSPVIKMA 505 (842)
Q Consensus 431 g~-l~Sgs~-DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~gH~~~V~sla 505 (842)
|. ++.++. ++.|.+||+ +++.+..+..+...-.+++++|++++++. .+++|.+||++ ++.+..+..+. .+.+++
T Consensus 242 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~ 320 (353)
T 3vgz_A 242 RQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLA 320 (353)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEE
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEE
Confidence 87 665554 589999999 78888877754443345677899777766 68999999997 67666665543 567776
Q ss_pred --eCCCEEEEEcCCCC
Q 003171 506 --VGAGYIFTLANHGG 519 (842)
Q Consensus 506 --~dg~~l~S~S~Dgt 519 (842)
+|+++++.+..++.
T Consensus 321 ~s~dg~~l~v~~~~~~ 336 (353)
T 3vgz_A 321 LSADGKTLYVSVKQKS 336 (353)
T ss_dssp ECTTSCEEEEEEECCC
T ss_pred EcCCCCEEEEEEcccc
Confidence 47887776655543
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.68 E-value=4.9e-15 Score=159.82 Aligned_cols=268 Identities=12% Similarity=0.167 Sum_probs=164.8
Q ss_pred EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEC
Q 003171 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD-GRIMCWKM 220 (842)
Q Consensus 144 ~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D-GtIrlWdl 220 (842)
.+|+ +.|+.|++||+....... .... ..+...+.+++++|+|++|++++.+ +.|++|++
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~-----------------~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~ 67 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALT-----------------LTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 67 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEE-----------------EEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCCeEEEEEECCCCcEE-----------------Eeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEe
Confidence 3454 358999999985311000 0111 1115578899999999999999887 99999999
Q ss_pred C--CCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEe-eCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceee
Q 003171 221 N--ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSG-SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (842)
Q Consensus 221 ~--~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~Sg-S~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~ 296 (842)
. ++. ...+..+..+. .+.+++|+|+|+ |+++ ..++.|++||+..+. .... ...
T Consensus 68 ~~~~~~------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-~~~~------~~~--------- 124 (343)
T 1ri6_A 68 APDDGA------LTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-PVGV------VDV--------- 124 (343)
T ss_dssp CTTTCC------EEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-EEEE------EEE---------
T ss_pred cCCCCc------eeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc-cccc------ccc---------
Confidence 7 431 12333444444 788999999998 6554 458999999984211 0000 000
Q ss_pred cccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccC-CcEEEEeecCCceEeeeecccCCCcccccceE
Q 003171 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (842)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (842)
+.. ...+..++.++++..++++. ++.|.+||+.+ +++...... .
T Consensus 125 ~~~-----------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~----------------------~ 171 (343)
T 1ri6_A 125 VEG-----------LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA----------------------E 171 (343)
T ss_dssp ECC-----------CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE----------------------E
T ss_pred ccC-----------CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc----------------------c
Confidence 000 12344566777777666654 57899999987 554221100 0
Q ss_pred EEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe-CCCeEEEEcCC---
Q 003171 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDPN--- 448 (842)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs-~DgtIrlWD~~--- 448 (842)
... .....+..++++|+|. +++++ .++.|++||++
T Consensus 172 ---~~~-------------------------------------~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~ 211 (343)
T 1ri6_A 172 ---VTT-------------------------------------VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH 211 (343)
T ss_dssp ---EEC-------------------------------------STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred ---ccc-------------------------------------CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 000 0012344678999997 65544 78999999983
Q ss_pred CCe--eeeee----cC--CccEEEE--EecCCEEEEEe-cCcEEEEEeCC--C---cccccccccccCEEEEE--eCCCE
Q 003171 449 GNR--LQDFQ----YL--PFAVQCL--CTFGSQIWVGY-MNGIVQVLDLE--G---NLLGGWVAHSSPVIKMA--VGAGY 510 (842)
Q Consensus 449 g~~--l~~l~----~H--~~~V~sl--s~dG~~LasGs-~DgtIrlWD~~--g---~~i~~l~gH~~~V~sla--~dg~~ 510 (842)
|+. ++.+. ++ ...+.++ +++|++|+++. .++.|++||++ + +.+..+..+.. +.+++ +++++
T Consensus 212 g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~ 290 (343)
T 1ri6_A 212 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKY 290 (343)
T ss_dssp SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSE
T ss_pred CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCE
Confidence 332 22222 11 2244445 45788887544 79999999986 2 23444544444 66666 47888
Q ss_pred EEEEc-CCCCeeecccc
Q 003171 511 IFTLA-NHGGIRGWNVT 526 (842)
Q Consensus 511 l~S~S-~DgtIrvWd~~ 526 (842)
++.++ .|+.|++|++.
T Consensus 291 l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 291 LIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEECTTTCEEEEEEEE
T ss_pred EEEecCCCCeEEEEEEc
Confidence 88777 68999999764
No 142
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.66 E-value=5.6e-15 Score=173.79 Aligned_cols=257 Identities=11% Similarity=0.011 Sum_probs=164.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCccCCCCCcceeEEecccC-CcEEEEEEecCCC-EEEeeC---CCcE
Q 003171 191 VSSVMCMVGDEASGVVWSGHR-DGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSGSE---GGGI 264 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~-DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L~SgS~---DgtI 264 (842)
..+|.+++++|||+.||+++. ||+++||+++++ ....+..|. ..|.+++|||| + +++++. +...
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---------~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~ 90 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---------ETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQH 90 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---------EEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC---------CcEeeecccccccccccCCCC-eEEEEeccCCCCcce
Confidence 568999999999999999887 999999999765 345555555 68999999999 7 456664 5667
Q ss_pred EEEeCCC--ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC--EEEEeCCCcEEEEEcc
Q 003171 265 KIWPWEA--IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA--KVWSAGFLSFALWDAR 340 (842)
Q Consensus 265 rvWd~~t--~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~--~v~s~s~~tI~lWD~~ 340 (842)
+||.+.. ......+.... .....+.++++. .++++..+.+.|||+.
T Consensus 91 ~l~~~~~~~~g~~~~l~~~~------------------------------~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~ 140 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQRLEAVK------------------------------PMRILSGVDTGEAVVFTGATEDRVALYALD 140 (582)
T ss_dssp EEEEEETTSTTCCEECTTSC------------------------------SBEEEEEEECSSCEEEEEECSSCEEEEEEE
T ss_pred EEEEEeccCCCccccccCCC------------------------------CceeeeeCCCCCeEEEEecCCCCceEEEcc
Confidence 7776543 11111111100 011222233332 3444445566699999
Q ss_pred CCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecC-----CcEEEEee-cC-
Q 003171 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-----DAVRRVAA-KG- 413 (842)
Q Consensus 341 tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~-----~~v~~v~~-~g- 413 (842)
++++......+. ..+.+++ +++.++.+.. ..++.+.. .|
T Consensus 141 ~g~~~~l~~~~~---~~~~~sp-------------------------------DG~~la~~~~~~~~~~~i~~~d~~~g~ 186 (582)
T 3o4h_A 141 GGGLRELARLPG---FGFVSDI-------------------------------RGDLIAGLGFFGGGRVSLFTSNLSSGG 186 (582)
T ss_dssp TTEEEEEEEESS---CEEEEEE-------------------------------ETTEEEEEEEEETTEEEEEEEETTTCC
T ss_pred CCcEEEeecCCC---ceEEECC-------------------------------CCCEEEEEEEcCCCCeEEEEEcCCCCC
Confidence 998755543322 1222222 2222221111 11222221 12
Q ss_pred --ccccCCCceEEEEECCCCc-EEEEeCCC--eEEEEcC-CCCeeeeeecCCccEEE----------EEecCCEEEEEec
Q 003171 414 --GFGDDNRRTEALTTSIDGM-IWTGGANG--LLLQWDP-NGNRLQDFQYLPFAVQC----------LCTFGSQIWVGYM 477 (842)
Q Consensus 414 --~~~~~~~~v~al~~s~dg~-l~Sgs~Dg--tIrlWD~-~g~~l~~l~~H~~~V~s----------ls~dG~~LasGs~ 477 (842)
.+..+...+..++|||||+ |+++..++ .|++||+ +|++. .+.+|...|.+ +++||..+++++.
T Consensus 187 ~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 265 (582)
T 3o4h_A 187 LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR 265 (582)
T ss_dssp CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEc
Confidence 2345566778899999998 77777788 8999999 45665 77777765542 5678988899999
Q ss_pred CcEEEEEeCCCcccccccccccCEEEEEe-CCCEEEEEcCCCC---eeecccc
Q 003171 478 NGIVQVLDLEGNLLGGWVAHSSPVIKMAV-GAGYIFTLANHGG---IRGWNVT 526 (842)
Q Consensus 478 DgtIrlWD~~g~~i~~l~gH~~~V~sla~-dg~~l~S~S~Dgt---IrvWd~~ 526 (842)
|++++||++ |+++... .+.|.++++ +++.+++++.+.+ |.+|+..
T Consensus 266 ~g~~~l~~~-g~~~~~~---~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 266 EGRSAVFID-GERVEAP---QGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp TTEEEEEET-TEEECCC---SSEEEEEEEETTEEEEEEEETTEEEEEEEETTC
T ss_pred CCcEEEEEE-CCeeccC---CCceEEEEecCCEEEEEEcCCCCCCeEEEEcCC
Confidence 999999999 8776533 355766653 7778888888765 5666643
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.66 E-value=2.2e-15 Score=181.28 Aligned_cols=319 Identities=8% Similarity=-0.027 Sum_probs=175.5
Q ss_pred CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecC---CCeEEEEEcCCCCEEEEEeCC------
Q 003171 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGV---SSVMCMVGDEASGVVWSGHRD------ 212 (842)
Q Consensus 142 ~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~V~~la~dpdg~~LaSGs~D------ 212 (842)
+..++.+.|++|++||+++...... + . .+ . ..|.+++|||||++|++++.|
T Consensus 28 g~~~~~~~dg~i~~~d~~~g~~~~~-----------------~-~-~~-~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~ 87 (723)
T 1xfd_A 28 TEFIYREQKGTVRLWNVETNTSTVL-----------------I-E-GK-KIESLRAIRYEISPDREYALFSYNVEPIYQH 87 (723)
T ss_dssp SCBCCCCSSSCEEEBCGGGCCCEEE-----------------E-C-TT-TTTTTTCSEEEECTTSSEEEEEESCCCCSSS
T ss_pred CcEEEEeCCCCEEEEECCCCcEEEE-----------------e-c-cc-cccccccceEEECCCCCEEEEEecCccceee
Confidence 3333345788999999976543211 0 0 01 1 148899999999999999875
Q ss_pred ---CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 213 ---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 213 ---GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
+.|.+||+.++. ...+....+|...|.+++|||||+ |++++. +.|++||+.+++.............
T Consensus 88 ~~~~~i~~~d~~~~~------~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~-- 158 (723)
T 1xfd_A 88 SYTGYYVLSKIPHGD------PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVI-- 158 (723)
T ss_dssp CCCSEEEEEESSSCC------CEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTE--
T ss_pred cceeeEEEEECCCCc------eEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCce--
Confidence 678899999862 012222345666799999999997 777775 7999999987543211110000000
Q ss_pred EEeeceeecccceecccee-eeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEccCCcEEEEeecCCceEeeeecccCCC
Q 003171 289 IVERSYIDLRSHLSVNGFS-SILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~-~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (842)
+.++ ..-+- .-....+..++.++++..|+.++. ..+++|++..... ..... ...+.++....
T Consensus 159 --------~~g~--~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~G~ 223 (723)
T 1xfd_A 159 --------YNGL--SDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG----SIYPT-VKPYHYPKAGS 223 (723)
T ss_dssp --------EEEE--CCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS----SSSCC-CEEEECCBTTS
T ss_pred --------ECcc--cceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC----cCCCc-ceeccCCCCCC
Confidence 0000 00000 000012356778888888877653 3577777542110 00000 01112221111
Q ss_pred cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcE-EEEeC----CC
Q 003171 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMI-WTGGA----NG 440 (842)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l-~Sgs~----Dg 440 (842)
. .....++++....... ...+.....+..+...+..+++||||++ ++.+. +.
T Consensus 224 ~--~~~~~l~~~d~~~~~~---------------------~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 280 (723)
T 1xfd_A 224 E--NPSISLHVIGLNGPTH---------------------DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVS 280 (723)
T ss_dssp C--CCEEEEEEEESSSSCC---------------------CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEE
T ss_pred C--CCeeEEEEEECCCCce---------------------eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeE
Confidence 0 0011122222110000 0000000011223456788999999984 44432 35
Q ss_pred eEEEEcC-CCCeeeeeec-CCccEE------EEEecCCEEEE--EecCc------EEEEEe-CCCcc---cccccccccC
Q 003171 441 LLLQWDP-NGNRLQDFQY-LPFAVQ------CLCTFGSQIWV--GYMNG------IVQVLD-LEGNL---LGGWVAHSSP 500 (842)
Q Consensus 441 tIrlWD~-~g~~l~~l~~-H~~~V~------sls~dG~~Las--Gs~Dg------tIrlWD-~~g~~---i~~l~gH~~~ 500 (842)
.|++||+ +|++...+.. |..++. .+++||++|+. +..++ .|.+|| .++.. ...+..+...
T Consensus 281 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 360 (723)
T 1xfd_A 281 ILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWD 360 (723)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSC
T ss_pred EEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeE
Confidence 7999999 6777766654 334332 45679997665 34566 677888 45444 6666654444
Q ss_pred EEE---EEeCCCEEEEEcCC---CCeeeccccC
Q 003171 501 VIK---MAVGAGYIFTLANH---GGIRGWNVTS 527 (842)
Q Consensus 501 V~s---la~dg~~l~S~S~D---gtIrvWd~~~ 527 (842)
+.. +.+||+.|+..+.+ +++++|++..
T Consensus 361 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 361 VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred EEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 543 44689998766555 7899999864
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.66 E-value=8.4e-15 Score=175.98 Aligned_cols=275 Identities=10% Similarity=0.035 Sum_probs=177.3
Q ss_pred eeEEEEecC-CEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC
Q 003171 134 FLRTIVCTE-EQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 134 ~~~~l~~~~-~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D 212 (842)
.+..++.+. +.+..+.++.|++||+.+..... + ..+...+.+++|+|||+.|+++ .|
T Consensus 83 ~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~------------------l---~~~~~~~~~~~~SpdG~~la~~-~~ 140 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTY------------------L---FDTNEETASLDFSPVGDRVAYV-RN 140 (706)
T ss_dssp CCEEEEETTTTEEEEEETTEEEEEETTTTEEEE------------------E---ECCTTCCTTCEECTTSSEEEEE-ET
T ss_pred CceeEEECCCCeEEEEECCEEEEEECCCCceEE------------------c---cCCcccccCCcCCCCCCEEEEE-EC
Confidence 355566554 46666788999999997643211 1 1114467788999999999995 78
Q ss_pred CcEEEEECCC-----CccCCCCCcceeEEecccCCc--------------EEEEEEecCCC-EEEee-------------
Q 003171 213 GRIMCWKMNA-----RLLDSDDGFGEVLSWQAHRGP--------------VLSLCISSYGD-LWSGS------------- 259 (842)
Q Consensus 213 GtIrlWdl~~-----g~~~~~~~~~~~~~l~gH~~~--------------V~slafs~dG~-L~SgS------------- 259 (842)
+.|++|++.+ + +.......+... +.+++|||||+ |++++
T Consensus 141 ~~i~v~~~~~~~~~~g--------~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~ 212 (706)
T 2z3z_A 141 HNLYIARGGKLGEGMS--------RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVD 212 (706)
T ss_dssp TEEEEEECBCTTSCCC--------CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEE
T ss_pred CeEEEEecCcccccCC--------CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeec
Confidence 9999999987 6 333333333333 48999999998 77776
Q ss_pred --------------------CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEE
Q 003171 260 --------------------EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (842)
Q Consensus 260 --------------------~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las 319 (842)
.+..|++||+.+++........ .+ ...+..++.
T Consensus 213 ~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~-----------------~~----------~~~~~~~~~ 265 (706)
T 2z3z_A 213 YHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE-----------------PK----------EKFLTNLSW 265 (706)
T ss_dssp CCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS-----------------CT----------TCEEEEEEE
T ss_pred cCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC-----------------CC----------ceeEeeEEE
Confidence 4467999998764321110000 00 123556777
Q ss_pred cCCCCEEEEeC-CC-----cEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEee
Q 003171 320 DHSRAKVWSAG-FL-----SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ 393 (842)
Q Consensus 320 ~~~~~~v~s~s-~~-----tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~ 393 (842)
++++..|+.++ +. +|.+||+.+++.++.+.... ..
T Consensus 266 spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~--------------------------~~------------- 306 (706)
T 2z3z_A 266 SPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET--------------------------DK------------- 306 (706)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE--------------------------CS-------------
T ss_pred ECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc--------------------------CC-------------
Confidence 78887776643 32 79999999984333321100 00
Q ss_pred cCcceEEecCCcEEEEeecCccccCCCceEEEEECC--CCc-EEEEeCCCeEEEEcC--CCCeeeeeecCCccEEE---E
Q 003171 394 RSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI--DGM-IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQC---L 465 (842)
Q Consensus 394 ~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~--dg~-l~Sgs~DgtIrlWD~--~g~~l~~l~~H~~~V~s---l 465 (842)
.+ ...+..++++| ||+ +++++.|+.++||+. +++.++.+..|...|.+ +
T Consensus 307 --------------------~~---~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~ 363 (706)
T 2z3z_A 307 --------------------HY---VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGF 363 (706)
T ss_dssp --------------------SC---CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEE
T ss_pred --------------------Ce---ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEE
Confidence 00 00112356888 887 677888999999976 57888888888877765 3
Q ss_pred EecCCEEEEEec-Cc----EEEEEeCCCcccccccccccCEEEEE--eCCCEEEEEcCC----CCeeeccccCC
Q 003171 466 CTFGSQIWVGYM-NG----IVQVLDLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLANH----GGIRGWNVTSP 528 (842)
Q Consensus 466 s~dG~~LasGs~-Dg----tIrlWD~~g~~i~~l~gH~~~V~sla--~dg~~l~S~S~D----gtIrvWd~~~~ 528 (842)
+++|++|+.++. ++ .|..||+++.....+. |...+.+++ +||++++..+.+ +.|.+||+...
T Consensus 364 spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 364 DPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp CTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred cCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 568887776554 43 6777787644344443 677788876 578887755433 45999997653
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.65 E-value=1.6e-14 Score=155.38 Aligned_cols=280 Identities=9% Similarity=0.038 Sum_probs=158.6
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCC-CeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcc
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVS-SVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLL 225 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~V~~la~dpdg~~L-aSGs~DGtIrlWdl~~g~~ 225 (842)
+.++.|++||+.+...... + ...+.. .+.+++++|+|+.| ++++.++.|.+||+.++
T Consensus 8 ~~~~~v~~~d~~~~~~~~~-----------------~--~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-- 66 (337)
T 1pby_B 8 ARPDKLVVIDTEKMAVDKV-----------------I--TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-- 66 (337)
T ss_dssp ETTTEEEEEETTTTEEEEE-----------------E--ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC--
T ss_pred CCCCeEEEEECCCCcEEEE-----------------E--EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC--
Confidence 5689999999976433211 0 011011 47789999999766 55667889999999886
Q ss_pred CCCCCcceeEEec-cc----CCcEEEEEEecCCC-EEEee------------CCCcEEEEeCCCccceeecCCCceeeeE
Q 003171 226 DSDDGFGEVLSWQ-AH----RGPVLSLCISSYGD-LWSGS------------EGGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 226 ~~~~~~~~~~~l~-gH----~~~V~slafs~dG~-L~SgS------------~DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
+....+. ++ ...+.+++|+|+|+ |++++ .++.|++||+.+++....+..
T Consensus 67 ------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~------- 133 (337)
T 1pby_B 67 ------ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------- 133 (337)
T ss_dssp ------CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-------
T ss_pred ------CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-------
Confidence 4444443 22 23577899999997 66665 579999999976432111100
Q ss_pred EEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcc
Q 003171 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (842)
...+..++.++++..++.+ ++.|.+||+.+++++..+..+... ....+++.....
T Consensus 134 -----------------------~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l 188 (337)
T 1pby_B 134 -----------------------PRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAV 188 (337)
T ss_dssp -----------------------CSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCC
T ss_pred -----------------------CCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEE
Confidence 1123345667777767766 578999999999988776543210 011222211111
Q ss_pred cccceEEEEEecCCCCcccee---eeEeecCcceEEecCCcEEEEee-cCc-----cccCCCceEEEEECCCCc-EEEEe
Q 003171 368 MEDEFKTKIVTSSKKDKAQSS---FGFFQRSRNAIMGAADAVRRVAA-KGG-----FGDDNRRTEALTTSIDGM-IWTGG 437 (842)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s---~~~~~~~~~~~~g~~~~v~~v~~-~g~-----~~~~~~~v~al~~s~dg~-l~Sgs 437 (842)
+ +... ....... ......+..........+..+.. .+. +..+...+..++++|||+ ++++
T Consensus 189 ~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~- 258 (337)
T 1pby_B 189 W--------NQHE-SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA- 258 (337)
T ss_dssp C--------CCCT-TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-
T ss_pred e--------eecc-CCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-
Confidence 0 0000 0000000 00000000000000001111111 010 112334566789999997 5555
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-Ccccccccccc
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (842)
++.|.+||+ +++.+..+..+ ..+.++ +++|++|++++.++.|++||++ ++.+..+..+.
T Consensus 259 -~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 259 -YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp -ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred -CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 788999999 67777776543 334555 4578899988889999999986 66666665443
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.63 E-value=3.4e-14 Score=179.09 Aligned_cols=300 Identities=12% Similarity=-0.015 Sum_probs=186.1
Q ss_pred EEEEEcCCCCEEEEEeCC----C--cEEEEECCCCccCC--CCC------------------------------------
Q 003171 195 MCMVGDEASGVVWSGHRD----G--RIMCWKMNARLLDS--DDG------------------------------------ 230 (842)
Q Consensus 195 ~~la~dpdg~~LaSGs~D----G--tIrlWdl~~g~~~~--~~~------------------------------------ 230 (842)
.+++|+|||+++++++.| + .|.+|++.++.... ...
T Consensus 110 ~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~ 189 (1045)
T 1k32_A 110 DVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWI 189 (1045)
T ss_dssp EEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEE
T ss_pred ccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEE
Confidence 899999999999999866 3 57777776542100 000
Q ss_pred ---cceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCcc-ceeecCCCceeeeEEEEeeceeecccceeccce
Q 003171 231 ---FGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (842)
Q Consensus 231 ---~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~-~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~ 306 (842)
-.....+.+|.+.|.+++|+++.-+++++.|++++||.++... ....+.. +
T Consensus 190 ~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~-------------------~------ 244 (1045)
T 1k32_A 190 EVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTS-------------------F------ 244 (1045)
T ss_dssp EEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCC-------------------C------
T ss_pred ECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecC-------------------C------
Confidence 0112344678888999999987224577888999999864311 1111110 0
Q ss_pred eeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCC-----------ceEeeeecc-cCCCccc-ccceE
Q 003171 307 SSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDG-----------QIENRVDMS-LLPDFAM-EDEFK 373 (842)
Q Consensus 307 ~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~-----------~~~~~~~~s-~~~~~~~-~~~~~ 373 (842)
..+...++++++..|+.+.+..|.+||+.++.+. .+..+. .....+.++ +.....+ .....
T Consensus 245 -----~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~ 318 (1045)
T 1k32_A 245 -----TDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQ 318 (1045)
T ss_dssp -----CSSCEEEEEESSSCEEEEETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTE
T ss_pred -----CCcceeeEcCCCCEEEEEeCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCE
Confidence 1122335556777777777889999999665543 554321 011233444 4322111 00111
Q ss_pred EEEEecCCC--------Cc-cceeeeEeecCcceEEecCCc-EE-EEeec-C---ccccCCCceEEEEECCCCc-EEEEe
Q 003171 374 TKIVTSSKK--------DK-AQSSFGFFQRSRNAIMGAADA-VR-RVAAK-G---GFGDDNRRTEALTTSIDGM-IWTGG 437 (842)
Q Consensus 374 ~~~~s~~~~--------~~-~~~s~~~~~~~~~~~~g~~~~-v~-~v~~~-g---~~~~~~~~v~al~~s~dg~-l~Sgs 437 (842)
++++..... .. ....+.|. ++...+....+. ++ .+... + .+..+...+..+++||||+ |++++
T Consensus 319 i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~ 397 (1045)
T 1k32_A 319 AFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN 397 (1045)
T ss_dssp EEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE
T ss_pred EEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEEC
Confidence 222221100 00 11233444 443333333332 33 22221 1 2334557788999999998 78899
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCc----------EEEEEeCCCcccccccccccCEEEE
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNG----------IVQVLDLEGNLLGGWVAHSSPVIKM 504 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~Dg----------tIrlWD~~g~~i~~l~gH~~~V~sl 504 (842)
.+++|++||+ +|++...+.+|...|.++ ++||++|++++.++ +|++||+++..+..+..|...+.++
T Consensus 398 ~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~ 477 (1045)
T 1k32_A 398 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 477 (1045)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEE
T ss_pred CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCc
Confidence 9999999999 677777777888887766 56899998887654 9999999854477888898888887
Q ss_pred E--eCCCEEEEEcCCCCeeecccc
Q 003171 505 A--VGAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 505 a--~dg~~l~S~S~DgtIrvWd~~ 526 (842)
+ +||++|++++.++..++|+..
T Consensus 478 ~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 478 AFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EECTTSCEEEEEESCCCCCEECSS
T ss_pred eEcCCCCEEEEEecccCCcCcchh
Confidence 6 489999999999999988753
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.62 E-value=7.2e-14 Score=151.66 Aligned_cols=242 Identities=15% Similarity=0.163 Sum_probs=163.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHR-------DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEG 261 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~-------DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~D 261 (842)
...+..++++|+|+.|++++. +++|.+||..++ +....+.. ...+.+++|+|+|+ ++ +++.+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--------~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~ 110 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--------EVTQAIHN-DLKPFGATINNTTQTLWFGNTVN 110 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--------CEEEEEEE-SSCCCSEEEETTTTEEEEEETTT
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--------eEEEEEec-CCCcceEEECCCCCEEEEEecCC
Confidence 346789999999999999885 468999999886 44555443 34477899999998 54 66678
Q ss_pred CcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC---CCcEEEEE
Q 003171 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWD 338 (842)
Q Consensus 262 gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s---~~tI~lWD 338 (842)
++|.+||..+++....+..... . .... ........+++++++..++.+. +..|.+||
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~----------------~-~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDR----------------K-RTEE---VRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCC----------------C-CCSS---CCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred CEEEEEeCCCCeeEEEEecCCC----------------c-cccc---cCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 9999999977543221111000 0 0000 0001145677788888777665 45799999
Q ss_pred ccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccC
Q 003171 339 ARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (842)
Q Consensus 339 ~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~ 418 (842)
+.+++.+..+...+.
T Consensus 171 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 185 (353)
T 3vgz_A 171 GGNIKLKTAIQNTGK----------------------------------------------------------------- 185 (353)
T ss_dssp TTTTEEEEEECCCCT-----------------------------------------------------------------
T ss_pred CCCCceEEEecCCCC-----------------------------------------------------------------
Confidence 999887655431110
Q ss_pred CCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeec----CCccEEEE--EecCCEEEEEec-CcEEEEEeCC-C
Q 003171 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY----LPFAVQCL--CTFGSQIWVGYM-NGIVQVLDLE-G 488 (842)
Q Consensus 419 ~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~----H~~~V~sl--s~dG~~LasGs~-DgtIrlWD~~-g 488 (842)
.+..++++|||. +++++.++.|.+||+ +++.+..+.. +...+.++ +++|++|++++. ++.|.+||++ +
T Consensus 186 --~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 186 --MSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp --TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred --ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 012345778876 788888999999999 6777777654 44456555 567998887775 5999999996 6
Q ss_pred cccccccccccCEEEEEeCCCEEE-EEcCCCCeeeccccCC
Q 003171 489 NLLGGWVAHSSPVIKMAVGAGYIF-TLANHGGIRGWNVTSP 528 (842)
Q Consensus 489 ~~i~~l~gH~~~V~sla~dg~~l~-S~S~DgtIrvWd~~~~ 528 (842)
+.+..+..+...-..+.+++++++ +...+++|.+||..+.
T Consensus 264 ~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 264 NILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp CEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred cEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 766666554433344557888655 5557999999997653
No 148
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.61 E-value=3e-14 Score=172.00 Aligned_cols=276 Identities=9% Similarity=0.025 Sum_probs=160.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcc--eeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFG--EVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~--~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.|.+++|+|||++|++++. ++|++||+.++ . ....+..|...|.+++|||||+ |++++ ++.|++||+
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~--------~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~ 179 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQE--------GKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDL 179 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSC--------STTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCC--------CcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEec
Confidence 4788999999999999987 99999999885 1 4556778889999999999998 66766 569999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CC----------------
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FL---------------- 332 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~---------------- 332 (842)
.+++.. .+........ . .+. ...+..-....+..++.++++..|+.++ +.
T Consensus 180 ~~g~~~-~~~~~~~~~~-~---------~g~--~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~ 246 (741)
T 2ecf_A 180 ASGRQM-QLTADGSTTI-G---------NGI--AEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRT 246 (741)
T ss_dssp TTTEEE-ECCCCCCSSE-E---------ESC--CCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCE
T ss_pred CCCCEE-EeccCCccce-e---------ccc--cceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcc
Confidence 775322 1111100000 0 000 0000000000122344555555554442 11
Q ss_pred -----------------cEEEEEccC-CcEEEEeec--CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEe
Q 003171 333 -----------------SFALWDART-RELLKVFNI--DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF 392 (842)
Q Consensus 333 -----------------tI~lWD~~t-g~~l~~l~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~ 392 (842)
.|.+||+.+ +++...... +......+.+
T Consensus 247 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 294 (741)
T 2ecf_A 247 DVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-------------------------------- 294 (741)
T ss_dssp EEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE--------------------------------
T ss_pred cceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe--------------------------------
Confidence 677888888 776444322 1112222222
Q ss_pred ecCcceEEecC-----Cc-EEEEee-cCc----cccCC-C---ceEEEEECCCCc-EEEEeCCCeEEEEcC--CCCeeee
Q 003171 393 QRSRNAIMGAA-----DA-VRRVAA-KGG----FGDDN-R---RTEALTTSIDGM-IWTGGANGLLLQWDP--NGNRLQD 454 (842)
Q Consensus 393 ~~~~~~~~g~~-----~~-v~~v~~-~g~----~~~~~-~---~v~al~~s~dg~-l~Sgs~DgtIrlWD~--~g~~l~~ 454 (842)
+++..++.... +. ++.+.. .+. +..+. . .+..++|+|||+ +++++.||+++||.. +++ +..
T Consensus 295 pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~ 373 (741)
T 2ecf_A 295 RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAA 373 (741)
T ss_dssp EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEE
T ss_pred CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eee
Confidence 22222111110 01 111111 111 01111 1 234688999998 577788887777755 567 888
Q ss_pred eecCCccEEE---EEecCCEEEE-EecCc--EEEEEeCC--CcccccccccccCEEEEE--eCCCEEEEEcCC----CCe
Q 003171 455 FQYLPFAVQC---LCTFGSQIWV-GYMNG--IVQVLDLE--GNLLGGWVAHSSPVIKMA--VGAGYIFTLANH----GGI 520 (842)
Q Consensus 455 l~~H~~~V~s---ls~dG~~Las-Gs~Dg--tIrlWD~~--g~~i~~l~gH~~~V~sla--~dg~~l~S~S~D----gtI 520 (842)
+..|...|.+ ++++|++|+. ++.++ +++||++. |+....+.. ...+.+++ +|+++++....+ ..+
T Consensus 374 l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~ 452 (741)
T 2ecf_A 374 LTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQI 452 (741)
T ss_dssp SCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred eeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeE
Confidence 8888887875 4568987765 44455 89999864 666666665 56677776 578877744332 356
Q ss_pred eeccc
Q 003171 521 RGWNV 525 (842)
Q Consensus 521 rvWd~ 525 (842)
.+|+.
T Consensus 453 ~l~~~ 457 (741)
T 2ecf_A 453 ELFRA 457 (741)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 77764
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.60 E-value=7.2e-14 Score=167.86 Aligned_cols=272 Identities=11% Similarity=-0.005 Sum_probs=150.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (842)
.+|.+++|+|| +.++.+ .|++|++||+.++ ....+..|.+.|.+++|||||+ |++ +.|+.|++|++.
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~---------~~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~ 149 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR---------KVTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGG 149 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT---------EEEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECB
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCC---------ceEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecC
Confidence 57999999999 555554 4699999999885 3455667778899999999998 556 478999999997
Q ss_pred C-----ccceeecCCCceeeeEEEEeeceeecccceecccee--eeecCCEEEEEEcCCCCEEEEeC-C-CcEEEEEccC
Q 003171 271 A-----IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFS--SILTSDIKNLLSDHSRAKVWSAG-F-LSFALWDART 341 (842)
Q Consensus 271 t-----~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~--~~~s~~v~~las~~~~~~v~s~s-~-~tI~lWD~~t 341 (842)
+ ++............. .+.. .-....+..+..++++..|+.++ + ..+..|.+..
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~-----------------~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~ 212 (706)
T 2z3z_A 150 KLGEGMSRAIAVTIDGTETLV-----------------YGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVD 212 (706)
T ss_dssp CTTSCCCCCEESCSCCBTTEE-----------------ESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEE
T ss_pred cccccCCCcEEeccCCCCCeE-----------------cccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeec
Confidence 6 432211110000000 0000 00001134566677777776654 1 1121111100
Q ss_pred CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCc
Q 003171 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (842)
Q Consensus 342 g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~ 421 (842)
.............+.... -....+++++.... .....+. ....+...
T Consensus 213 ------~~~~~~~~~~~~y~~~g~--~~~~~~l~~~d~~~----------------------~~~~~~~---~~~~~~~~ 259 (706)
T 2z3z_A 213 ------YHPLEAESKPLYYPMAGT--PSHHVTVGIYHLAT----------------------GKTVYLQ---TGEPKEKF 259 (706)
T ss_dssp ------CCSSSCEEEEECCCBTTS--CCCEEEEEEEETTT----------------------TEEEECC---CCSCTTCE
T ss_pred ------cCCCCCceEEeeCCCCCC--CCCeeEEEEEECCC----------------------CceEeec---cCCCCcee
Confidence 000000000000000000 00001111111110 0000000 00123456
Q ss_pred eEEEEECCCCc-EEEEeCCC-----eEEEEcC-CCCeeeeee--cCCccE---E--EEEe--cCCEEEEEecCcEEEEEe
Q 003171 422 TEALTTSIDGM-IWTGGANG-----LLLQWDP-NGNRLQDFQ--YLPFAV---Q--CLCT--FGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 422 v~al~~s~dg~-l~Sgs~Dg-----tIrlWD~-~g~~l~~l~--~H~~~V---~--sls~--dG~~LasGs~DgtIrlWD 485 (842)
+..++++|||+ |++++.|+ +|++||+ +|+.++.+. .+...+ . .+++ ||++|++++.|++++||+
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence 77899999998 77777675 8999999 564554443 233222 2 4567 899999999999999997
Q ss_pred C--CCcccccccccccCEEE-EE--eCCCEEEEEc-CCC--Ceeeccc
Q 003171 486 L--EGNLLGGWVAHSSPVIK-MA--VGAGYIFTLA-NHG--GIRGWNV 525 (842)
Q Consensus 486 ~--~g~~i~~l~gH~~~V~s-la--~dg~~l~S~S-~Dg--tIrvWd~ 525 (842)
. +++.+..+..|...|.+ ++ +|++.++.++ .++ .+++|.+
T Consensus 340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 5 47777888888888876 44 5787776544 444 2455543
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.59 E-value=4.3e-13 Score=146.26 Aligned_cols=248 Identities=12% Similarity=0.117 Sum_probs=153.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee-CCCcEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~---DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIr 265 (842)
...+..++++|+|+ |++++. ++.|++|++.++. .+.+..+.+|...+..|+|+|||+ |++++ .+++|+
T Consensus 39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~------~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~ 111 (347)
T 3hfq_A 39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT------AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAE 111 (347)
T ss_dssp CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE------EEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc------EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEE
Confidence 44567799999999 565554 6899999997752 123444566788899999999998 77766 789999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEcc-CCc
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR-TRE 343 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~-tg~ 343 (842)
+|++..... +. ....+ ...+.... .......+..++.++++..+++.. ++.|.+||+. +|+
T Consensus 112 v~~~~~~g~-~~------~~~~~-------~~~~~~p~---~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~ 174 (347)
T 3hfq_A 112 VMKIAADGA-LT------LTDTV-------QHSGHGPR---PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ 174 (347)
T ss_dssp EEEECTTSC-EE------EEEEE-------ECCCCCSS---TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred EEEeCCCCC-ee------eccee-------ecCCCCCC---ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence 999853111 00 00000 00000000 000012466788888877433333 4579999987 454
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceE
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (842)
+..... ... .....+.
T Consensus 175 ~~~~~~---------------------------~~~-------------------------------------~~g~~p~ 190 (347)
T 3hfq_A 175 LSEQSV---------------------------LTM-------------------------------------EAGFGPR 190 (347)
T ss_dssp EEEEEE---------------------------EEC-------------------------------------CTTCCEE
T ss_pred EEEeee---------------------------EEc-------------------------------------CCCCCCc
Confidence 321100 000 0011234
Q ss_pred EEEECCCCc-EEE-EeCCCeEEEEcCC---CCe--eeeeecCC------ccEEEE--EecCCEEEEE-ecCcEEEEEeCC
Q 003171 424 ALTTSIDGM-IWT-GGANGLLLQWDPN---GNR--LQDFQYLP------FAVQCL--CTFGSQIWVG-YMNGIVQVLDLE 487 (842)
Q Consensus 424 al~~s~dg~-l~S-gs~DgtIrlWD~~---g~~--l~~l~~H~------~~V~sl--s~dG~~LasG-s~DgtIrlWD~~ 487 (842)
.++++|||+ +++ +..++.|++|+++ |+. +..+.... ..+..+ ++||++|+++ ..+++|.+||+.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 578999998 655 4567899999983 432 33333222 335555 4689988654 458999999986
Q ss_pred --C--cccccccccccCEEEEE--eCCCEEEEEcC-CCCeeecccc
Q 003171 488 --G--NLLGGWVAHSSPVIKMA--VGAGYIFTLAN-HGGIRGWNVT 526 (842)
Q Consensus 488 --g--~~i~~l~gH~~~V~sla--~dg~~l~S~S~-DgtIrvWd~~ 526 (842)
| +.+..+..|...+.+++ +||++|+.++. +++|++|++.
T Consensus 271 ~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 271 ADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp GGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 3 34556666666677776 57888887765 5899999653
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.58 E-value=1e-14 Score=166.18 Aligned_cols=111 Identities=14% Similarity=-0.018 Sum_probs=84.1
Q ss_pred CCCceEEEEECCC-Cc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCcccc
Q 003171 418 DNRRTEALTTSID-GM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLG 492 (842)
Q Consensus 418 ~~~~v~al~~s~d-g~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~ 492 (842)
|...|.+++++|+ +. +++|+.||+|++||+ ++.++....+|...|++++. +|++|++|+.||+|++||++++...
T Consensus 148 h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~ 227 (434)
T 2oit_A 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKK 227 (434)
T ss_dssp GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEE
T ss_pred CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccc
Confidence 4456778889887 55 889999999999999 67676677789999999864 7999999999999999999866555
Q ss_pred ccccc-------ccCEEEEEeCC--CEEE-EEcCCCC------eeeccccCC
Q 003171 493 GWVAH-------SSPVIKMAVGA--GYIF-TLANHGG------IRGWNVTSP 528 (842)
Q Consensus 493 ~l~gH-------~~~V~sla~dg--~~l~-S~S~Dgt------IrvWd~~~~ 528 (842)
.+..| ...|.++.+++ .+++ ..+.||. +++|++...
T Consensus 228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 44443 34788888643 3443 3444543 889998653
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.57 E-value=3.5e-14 Score=153.70 Aligned_cols=69 Identities=4% Similarity=-0.129 Sum_probs=54.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccC-CcEEEEEEecCCC-EE-EeeCCCcEEEEeCCCcc
Q 003171 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LW-SGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 197 la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L~-SgS~DgtIrvWd~~t~~ 273 (842)
+++++++.++++++.|++|++||+.++ +...++..+. ..+.+++|+|+|+ ++ +++.+++|.+||+.+++
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASD--------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 76 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTT--------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCC--------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence 356678899999999999999999987 5555555443 2567899999997 54 66678999999997754
No 153
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.57 E-value=1.9e-13 Score=143.09 Aligned_cols=213 Identities=10% Similarity=-0.061 Sum_probs=145.2
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC-ccceeecCCCceee
Q 003171 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA-IEKALSLKPEERHT 285 (842)
Q Consensus 208 SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t-~~~~l~~~~~~~~~ 285 (842)
+++.|++|++||+.++ ....+..|.+.|.+++|+|+|+ |++++ ++.|++||+.+ ++.........
T Consensus 17 ~~~~~~~i~~~d~~~~---------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~--- 83 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR---------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA--- 83 (297)
T ss_dssp -CCCCEEEEEEETTTT---------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC---
T ss_pred CCCcceeEEEEeCCCC---------ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc---
Confidence 4567899999999885 3456778999999999999998 56665 88999999977 54321111100
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC---CcEEEEEc--cCCcEEEEeecCCceEeeeec
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF---LSFALWDA--RTRELLKVFNIDGQIENRVDM 360 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~---~tI~lWD~--~tg~~l~~l~~~~~~~~~~~~ 360 (842)
...+..++.++++..++++.. ...+||.+ .+++. ..+
T Consensus 84 -------------------------~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~------------ 125 (297)
T 2ojh_A 84 -------------------------TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLM------------ 125 (297)
T ss_dssp -------------------------CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EEC------------
T ss_pred -------------------------cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEe------------
Confidence 012334556666766666542 24455543 22221 000
Q ss_pred ccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EE-EEeC
Q 003171 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW-TGGA 438 (842)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~-Sgs~ 438 (842)
.. ...+..++++|||+ |+ +++.
T Consensus 126 -------------------------------------------------------~~-~~~~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 126 -------------------------------------------------------TK-NLPSYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp -------------------------------------------------------CS-SSSEEEEEECTTSSEEEEEEEE
T ss_pred -------------------------------------------------------ec-CCCccceEECCCCCEEEEEECC
Confidence 00 01245577899987 54 7778
Q ss_pred CCeEEEEcC--CCCeeeeeecCCccEEEEE--ecCCEEEEEe-cCcEEEEEeC--CCcccccccccccCEEEEE--eCCC
Q 003171 439 NGLLLQWDP--NGNRLQDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDL--EGNLLGGWVAHSSPVIKMA--VGAG 509 (842)
Q Consensus 439 DgtIrlWD~--~g~~l~~l~~H~~~V~sls--~dG~~LasGs-~DgtIrlWD~--~g~~i~~l~gH~~~V~sla--~dg~ 509 (842)
|+.+++|++ .+.....+..|...+.+++ ++|++|+.++ .++.++||++ .+..+..+..|...+.+++ ++++
T Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 229 (297)
T 2ojh_A 150 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD 229 (297)
T ss_dssp TTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS
T ss_pred CCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC
Confidence 999999986 4556667777888888875 4788887766 5899999986 4667778888888888877 4888
Q ss_pred EEEEEcCC-----------CCeeeccccC
Q 003171 510 YIFTLANH-----------GGIRGWNVTS 527 (842)
Q Consensus 510 ~l~S~S~D-----------gtIrvWd~~~ 527 (842)
+++.++.+ +.|.+||+..
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 99888776 4588888654
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.56 E-value=5.6e-13 Score=144.16 Aligned_cols=283 Identities=9% Similarity=0.050 Sum_probs=158.1
Q ss_pred CCEEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEE-EEeCCCcEEEE
Q 003171 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW-SGHRDGRIMCW 218 (842)
Q Consensus 142 ~~~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~La-SGs~DGtIrlW 218 (842)
++.+|+ +.++.|++||+++...... + .+.+...+.+++++|+|+.++ ++..++.|.+|
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~-----------------~--~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~ 70 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKS-----------------C--VMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 70 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEE-----------------E--ECSSCCSSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEE-----------------E--ecCCCCCCceeEECCCCCEEEEEeCCCCcEEEE
Confidence 445555 4689999999976543211 0 011012467899999998665 55678999999
Q ss_pred ECCCCccCCCCCcceeEEec-cc-----CCcEEEEEEecCCC-EEEeeCC------------CcEEEEeCCCccceeecC
Q 003171 219 KMNARLLDSDDGFGEVLSWQ-AH-----RGPVLSLCISSYGD-LWSGSEG------------GGIKIWPWEAIEKALSLK 279 (842)
Q Consensus 219 dl~~g~~~~~~~~~~~~~l~-gH-----~~~V~slafs~dG~-L~SgS~D------------gtIrvWd~~t~~~~l~~~ 279 (842)
|+.++ +....+. +| ...+.+++|+|||+ |++++.+ ++|.+||+.+++.....
T Consensus 71 d~~t~--------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~- 141 (349)
T 1jmx_B 71 DLDTC--------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV- 141 (349)
T ss_dssp ETTTT--------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS-
T ss_pred eCCCC--------cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee-
Confidence 99886 4444444 22 23378899999998 6777655 89999999764311000
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeee
Q 003171 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVD 359 (842)
Q Consensus 280 ~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (842)
..+ . ....+.++++++++. ++.++ ..|.+||+.+++++..+...... ....
T Consensus 142 ------~~~---------~-----------~~~~~~~~~~s~dg~-l~~~~-~~i~~~d~~~~~~~~~~~~~~~~-~~~~ 192 (349)
T 1jmx_B 142 ------RTF---------P-----------MPRQVYLMRAADDGS-LYVAG-PDIYKMDVKTGKYTVALPLRNWN-RKGY 192 (349)
T ss_dssp ------EEE---------E-----------CCSSCCCEEECTTSC-EEEES-SSEEEECTTTCCEEEEECSTTCC-CTTB
T ss_pred ------eec---------c-----------CCCcccceeECCCCc-EEEcc-CcEEEEeCCCCceeccccccccC-Cccc
Confidence 000 0 011244566677776 55554 34999999999988776532100 0000
Q ss_pred cccCCCcccccceEEEEEecCCCCcc---ceeeeEeecCc-----------ceEEecCC-cEEEEeecCccccCCCceEE
Q 003171 360 MSLLPDFAMEDEFKTKIVTSSKKDKA---QSSFGFFQRSR-----------NAIMGAAD-AVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~---~~s~~~~~~~~-----------~~~~g~~~-~v~~v~~~g~~~~~~~~v~a 424 (842)
.++..... +........ ...+.+.+++. ........ .+..+. +......+..
T Consensus 193 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 259 (349)
T 1jmx_B 193 SAPDVLYF---------WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE----FADLTELYFT 259 (349)
T ss_dssp CCCBCCCC---------CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE----EEECSSCEEE
T ss_pred cCccceee---------ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc----cccCCCccee
Confidence 00000000 000000000 00011111000 00001111 111111 1113345678
Q ss_pred EEECC-CCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-Cccccccccc
Q 003171 425 LTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (842)
Q Consensus 425 l~~s~-dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH 497 (842)
++++| ||. ++++ ++.|.+||+ +++.++.+..+ ..+.++ +++|++|++++.++.|++||++ ++.+..+..+
T Consensus 260 ~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 260 GLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred eEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 88999 987 5555 889999999 67777776543 234454 4578888888889999999987 5666555433
No 155
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.56 E-value=2.5e-14 Score=172.12 Aligned_cols=279 Identities=10% Similarity=-0.005 Sum_probs=167.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC---cEEEEEEecCCC-EEEeeCC-------
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGD-LWSGSEG------- 261 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~---~V~slafs~dG~-L~SgS~D------- 261 (842)
.+.+++|+|||+++++ +.||+|++||+.++ +....+.+|.. .|.+++|||||+ |++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g--------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETN--------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC--------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCC--------cEEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence 3567899999998877 78999999999987 45566677765 499999999998 7787764
Q ss_pred --CcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEc
Q 003171 262 --GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA 339 (842)
Q Consensus 262 --gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~ 339 (842)
++|++||+++++. ..+..... + ...+..++.++++..|+.+++++|.+||+
T Consensus 89 ~~~~i~~~d~~~~~~-~~l~~~~~----------------~----------~~~~~~~~~SPdG~~la~~~~~~i~~~~~ 141 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDP-QSLDPPEV----------------S----------NAKLQYAGWGPKGQQLIFIFENNIYYCAH 141 (723)
T ss_dssp CCSEEEEEESSSCCC-EECCCTTC----------------C----------SCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred ceeeEEEEECCCCce-EeccCCcc----------------c----------cccccccEECCCCCEEEEEECCeEEEEEC
Confidence 7888999987543 11111000 0 11234456677888888777789999999
Q ss_pred cCCcEEEEeecCCc-eEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCC--cEEEEeecCccc
Q 003171 340 RTRELLKVFNIDGQ-IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD--AVRRVAAKGGFG 416 (842)
Q Consensus 340 ~tg~~l~~l~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~--~v~~v~~~g~~~ 416 (842)
.+++..+....+.. +.. ....+...++++ ......+.++++++.++....+ .+..+.......
T Consensus 142 ~~g~~~~~~~~~~~~~~~----~g~~~~v~~ee~----------~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~ 207 (723)
T 1xfd_A 142 VGKQAIRVVSTGKEGVIY----NGLSDWLYEEEI----------LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG 207 (723)
T ss_dssp SSSCCEEEECCCBTTTEE----EEECCHHHHHTT----------SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred CCCceEEEecCCCCCceE----CcccceeEEEEe----------ccCcceEEECCCCCEEEEEEECCCccceEEeeccCC
Confidence 99887655432111 000 000000000000 0001235566666555444322 111111100001
Q ss_pred cCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecC------CccEEEE--EecCCEEEEEec----CcEEEE
Q 003171 417 DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYL------PFAVQCL--CTFGSQIWVGYM----NGIVQV 483 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H------~~~V~sl--s~dG~~LasGs~----DgtIrl 483 (842)
.....+..+.++++|.. ..+.+|++||+ ++++...+..| ...|.++ ++||++|++.+. +..|++
T Consensus 208 ~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 284 (723)
T 1xfd_A 208 SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL 284 (723)
T ss_dssp SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEE
Confidence 12234566777777652 23458999999 56666667654 5677766 468998877653 468999
Q ss_pred EeCC-Ccccccccc-cccCEE----EEE--eCCCEEEE--EcCCC------Ceeecc
Q 003171 484 LDLE-GNLLGGWVA-HSSPVI----KMA--VGAGYIFT--LANHG------GIRGWN 524 (842)
Q Consensus 484 WD~~-g~~i~~l~g-H~~~V~----sla--~dg~~l~S--~S~Dg------tIrvWd 524 (842)
||++ |++...+.. |...|. +++ +||+.++. ...|+ .|.+||
T Consensus 285 ~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred EeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 9997 566555544 334433 444 68887774 44666 466666
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.56 E-value=2.9e-13 Score=145.42 Aligned_cols=257 Identities=10% Similarity=0.065 Sum_probs=156.3
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-ccCC-cEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecC
Q 003171 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRG-PVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLK 279 (842)
Q Consensus 204 ~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH~~-~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~ 279 (842)
++|++++.|++|++||+.++ +.+..+. ++.. .+.+++|+|+|+ + ++++.++.|.+||+.+++....+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM--------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT--------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC--------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 47899999999999999886 4555554 3322 478899999996 5 467778999999997754322111
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe-------------CCCcEEEEEccCCcEEE
Q 003171 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-------------GFLSFALWDARTRELLK 346 (842)
Q Consensus 280 ~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~-------------s~~tI~lWD~~tg~~l~ 346 (842)
.... +. ....+..++.++++..++.+ .++.|.+||+.+++.+.
T Consensus 74 ~~~~---------------------~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 74 LSTP---------------------EE---RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp CCBT---------------------TE---EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred cCCc---------------------cc---ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence 0000 00 00012345667777777776 35789999999998877
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee-cCc----cccCCCc
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KGG----FGDDNRR 421 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g~----~~~~~~~ 421 (842)
.+...... ..+.++ +++..++++ ...+..+.. .+. +..+. .
T Consensus 130 ~~~~~~~~-~~~~~s-------------------------------~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~-~ 175 (337)
T 1pby_B 130 AFEAPRQI-TMLAWA-------------------------------RDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQS-W 175 (337)
T ss_dssp EEECCSSC-CCEEEC-------------------------------TTSSCEEEE-SSSEEEEETTTTEEEEEECSTT-T
T ss_pred EEeCCCCc-ceeEEC-------------------------------CCCCEEEEe-CCeEEEEECCCCcEeeeeeccc-c
Confidence 66532211 111222 222222222 112222221 111 11111 0
Q ss_pred eEEEEECCCCc-EEEEe-CCC-----------------------eEEEEcC-CCCee-eeeecCCccEEEEE--ecCCEE
Q 003171 422 TEALTTSIDGM-IWTGG-ANG-----------------------LLLQWDP-NGNRL-QDFQYLPFAVQCLC--TFGSQI 472 (842)
Q Consensus 422 v~al~~s~dg~-l~Sgs-~Dg-----------------------tIrlWD~-~g~~l-~~l~~H~~~V~sls--~dG~~L 472 (842)
...+.++|||. ++..+ .++ .|.+||+ ++++. ..+..|...+.+++ ++|++|
T Consensus 176 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 255 (337)
T 1pby_B 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255 (337)
T ss_dssp TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEE
Confidence 01236788886 44433 222 4689999 56653 23445666676664 579999
Q ss_pred EEEecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccCCC
Q 003171 473 WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 473 asGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
+++ ++.|++||++ ++.+..+..+ ..+.+++ +|+++++.++.|+.|++||+.+..
T Consensus 256 ~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 256 FGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp EEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred EEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 988 7999999997 5666665543 3456665 578889989999999999987643
No 157
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.54 E-value=1.2e-12 Score=141.14 Aligned_cols=222 Identities=9% Similarity=-0.002 Sum_probs=145.1
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee-CCCcEEEEeCCCccc
Q 003171 198 VGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEK 274 (842)
Q Consensus 198 a~dpdg-~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIrvWd~~t~~~ 274 (842)
.|++++ ..+++++.+++|++||+.++ +....+..+...+ +++|+|+|+ |+.++ .++.|.+||+.+++.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTL--------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP 74 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTC--------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccc--------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce
Confidence 344444 45778889999999999987 5555666666667 999999998 66554 489999999976542
Q ss_pred -eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEE-EEEcCCCCEEEEeCCC----cEEEEEccCCcEEEEe
Q 003171 275 -ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKN-LLSDHSRAKVWSAGFL----SFALWDARTRELLKVF 348 (842)
Q Consensus 275 -~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~-las~~~~~~v~s~s~~----tI~lWD~~tg~~l~~l 348 (842)
...... ...... +++++++..++++... .|.+||+.+++++..+
T Consensus 75 ~~~~~~~------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~ 124 (331)
T 3u4y_A 75 KVVAIQE------------------------------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTI 124 (331)
T ss_dssp EEEEEEE------------------------------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEE
T ss_pred eEEeccc------------------------------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEE
Confidence 111000 111223 6667778877755544 8999999988775543
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
... .....++++
T Consensus 125 ~~~--------------------------------------------------------------------~~~~~~~~s 136 (331)
T 3u4y_A 125 PIP--------------------------------------------------------------------YDAVGIAIS 136 (331)
T ss_dssp ECC--------------------------------------------------------------------TTEEEEEEC
T ss_pred ECC--------------------------------------------------------------------CCccceEEC
Confidence 211 012357788
Q ss_pred CCCc-EEEE-eCCCe-EEEEcCC--CCee---eeeecCCccEEEE--EecCCEEEEEe-cCcEEEEEeCC-Ccc---ccc
Q 003171 429 IDGM-IWTG-GANGL-LLQWDPN--GNRL---QDFQYLPFAVQCL--CTFGSQIWVGY-MNGIVQVLDLE-GNL---LGG 493 (842)
Q Consensus 429 ~dg~-l~Sg-s~Dgt-IrlWD~~--g~~l---~~l~~H~~~V~sl--s~dG~~LasGs-~DgtIrlWD~~-g~~---i~~ 493 (842)
|||+ ++++ ..++. |.+|++. |... .....+...+.++ +++|++|++++ .+++|++||++ ++. +..
T Consensus 137 pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~ 216 (331)
T 3u4y_A 137 PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA 216 (331)
T ss_dssp TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence 9986 6544 45577 9999983 3321 1111233445655 45788776655 58999999987 666 666
Q ss_pred ccccccCEEEEE--eCCCEEEE-EcCCCCeeeccccC
Q 003171 494 WVAHSSPVIKMA--VGAGYIFT-LANHGGIRGWNVTS 527 (842)
Q Consensus 494 l~gH~~~V~sla--~dg~~l~S-~S~DgtIrvWd~~~ 527 (842)
+..+ ..+..++ +||++++. ...++.|.+||+.+
T Consensus 217 ~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 217 VGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp EECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred ccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 6544 4455555 57887664 44688899999765
No 158
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.54 E-value=6.9e-12 Score=132.88 Aligned_cols=234 Identities=8% Similarity=0.101 Sum_probs=157.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec------ccCCcEEEEEE-ecCCCEEEeeC--CC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ------AHRGPVLSLCI-SSYGDLWSGSE--GG 262 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~------gH~~~V~slaf-s~dG~L~SgS~--Dg 262 (842)
..+.+++++++|+++++.+.++.|++||..+ +....+. +|...+.+|++ .++|+||.+.. ++
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g---------~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~ 100 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEG---------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH 100 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTS---------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCC---------cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCC
Confidence 4678899999999888889999999999874 3344442 45567899999 47888775553 89
Q ss_pred cEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccC
Q 003171 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART 341 (842)
Q Consensus 263 tIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~t 341 (842)
.|++|+.+. +....+... .......++.++++..+++.. ...|.+||..
T Consensus 101 ~i~~~d~~g-~~~~~~~~~----------------------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 150 (286)
T 1q7f_A 101 QIQIYNQYG-QFVRKFGAT----------------------------ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN- 150 (286)
T ss_dssp EEEEECTTS-CEEEEECTT----------------------------TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EEEEECCCC-cEEEEecCc----------------------------cCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-
Confidence 999999533 211111000 012355677777665443433 3578888853
Q ss_pred CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCc
Q 003171 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (842)
Q Consensus 342 g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~ 421 (842)
++.+..+... .+...
T Consensus 151 g~~~~~~~~~-----------------------------------------------------------------~~~~~ 165 (286)
T 1q7f_A 151 GNVLHKFGCS-----------------------------------------------------------------KHLEF 165 (286)
T ss_dssp SCEEEEEECT-----------------------------------------------------------------TTCSS
T ss_pred CCEEEEeCCC-----------------------------------------------------------------CccCC
Confidence 4433322100 01123
Q ss_pred eEEEEECCCCcEEEE-eCCCeEEEEcCCCCeeeeeecC--CccEEEEEe--cCCEEEEEecCc-EEEEEeCCCccccccc
Q 003171 422 TEALTTSIDGMIWTG-GANGLLLQWDPNGNRLQDFQYL--PFAVQCLCT--FGSQIWVGYMNG-IVQVLDLEGNLLGGWV 495 (842)
Q Consensus 422 v~al~~s~dg~l~Sg-s~DgtIrlWD~~g~~l~~l~~H--~~~V~sls~--dG~~LasGs~Dg-tIrlWD~~g~~i~~l~ 495 (842)
+..++++++|.++.+ +.++.|++||.+|+.+.++..+ ...+..++. +|+.+++...++ .|++||.+|+.+..+.
T Consensus 166 p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~ 245 (286)
T 1q7f_A 166 PNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALE 245 (286)
T ss_dssp EEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEE
T ss_pred cEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEc
Confidence 456888999997655 4578999999998888877543 356777776 566666665665 9999999888877776
Q ss_pred cccc--CEEEEE--eCCCEEEEEcCCCCeeeccccCCCC
Q 003171 496 AHSS--PVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 496 gH~~--~V~sla--~dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
.|.. .+.+++ ++|+.+++ +.|++|++|++....|
T Consensus 246 ~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 246 SKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp ESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred ccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 6543 366776 46766666 6799999999765443
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.54 E-value=6e-14 Score=169.03 Aligned_cols=285 Identities=10% Similarity=-0.032 Sum_probs=166.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC---cEEEEEEecCCC-EEEeeC---------CC
Q 003171 196 CMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGD-LWSGSE---------GG 262 (842)
Q Consensus 196 ~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~---~V~slafs~dG~-L~SgS~---------Dg 262 (842)
+++|+|+|++++++ .|++|++||+.++ +....+.+|.. .|.+++|||||+ |++++. |+
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~ 90 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETG--------QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTA 90 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSC--------CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCC--------cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecce
Confidence 57899999766654 6999999999987 45555566654 489999999998 677665 79
Q ss_pred cEEEEeCCCccce--eecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEcc
Q 003171 263 GIKIWPWEAIEKA--LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDAR 340 (842)
Q Consensus 263 tIrvWd~~t~~~~--l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~ 340 (842)
+|++||+++++.. ..+ ...+..++.+++|..|+.+.+++|++||+.
T Consensus 91 ~i~~~d~~~g~~~~~~~l--------------------------------~~~~~~~~~SPDG~~la~~~~~~i~~~~~~ 138 (719)
T 1z68_A 91 TYYIYDLSNGEFVRGNEL--------------------------------PRPIQYLCWSPVGSKLAYVYQNNIYLKQRP 138 (719)
T ss_dssp EEEEEETTTTEECCSSCC--------------------------------CSSBCCEEECSSTTCEEEEETTEEEEESST
T ss_pred EEEEEECCCCccccceec--------------------------------CcccccceECCCCCEEEEEECCeEEEEeCC
Confidence 9999999775420 000 112445677888888888888899999999
Q ss_pred CCcEEEEee-cCCc-eE----------------eeeecccCCCcccc----c-ceEEEEEecCCCCc--cceeeeEeecC
Q 003171 341 TRELLKVFN-IDGQ-IE----------------NRVDMSLLPDFAME----D-EFKTKIVTSSKKDK--AQSSFGFFQRS 395 (842)
Q Consensus 341 tg~~l~~l~-~~~~-~~----------------~~~~~s~~~~~~~~----~-~~~~~~~s~~~~~~--~~~s~~~~~~~ 395 (842)
++++..... ++.. +. ..+.++++....+. + .++........... ....+.+..
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~-- 216 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK-- 216 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB--
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC--
Confidence 988754321 1111 00 12233332221110 0 00000000000000 000000000
Q ss_pred cceEEecCC---cEEEEee-cCc------------cccCCCceEEEEECCCCcEE-EEeC--C--CeEEEEc----C-CC
Q 003171 396 RNAIMGAAD---AVRRVAA-KGG------------FGDDNRRTEALTTSIDGMIW-TGGA--N--GLLLQWD----P-NG 449 (842)
Q Consensus 396 ~~~~~g~~~---~v~~v~~-~g~------------~~~~~~~v~al~~s~dg~l~-Sgs~--D--gtIrlWD----~-~g 449 (842)
.|... .+..+.. .+. +..+...+..+++|||++++ +... + ..|.+|| + +|
T Consensus 217 ----~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g 292 (719)
T 1z68_A 217 ----AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW 292 (719)
T ss_dssp ----TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred ----CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence 01111 1222221 111 22456678899999999864 4322 2 2488999 8 57
Q ss_pred Ceeeee----ecCCccEE-------EEEecCCEEEE--EecCc--EEEEEeCCCcccccccccccCEEEEE-eCCCEEEE
Q 003171 450 NRLQDF----QYLPFAVQ-------CLCTFGSQIWV--GYMNG--IVQVLDLEGNLLGGWVAHSSPVIKMA-VGAGYIFT 513 (842)
Q Consensus 450 ~~l~~l----~~H~~~V~-------sls~dG~~Las--Gs~Dg--tIrlWD~~g~~i~~l~gH~~~V~sla-~dg~~l~S 513 (842)
++...+ .+|..+|. .+++||+.|+. +..+| .|.+||+.+.....+..+...|..+. .+++.++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~d~~~i~~ 372 (719)
T 1z68_A 293 DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRVTQDSLFY 372 (719)
T ss_dssp ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEECSSEEEE
T ss_pred ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEEeCCEEEE
Confidence 766666 46776665 35678985554 33444 67888887554666766766676643 37777775
Q ss_pred EcCC-----CCeeeccccC
Q 003171 514 LANH-----GGIRGWNVTS 527 (842)
Q Consensus 514 ~S~D-----gtIrvWd~~~ 527 (842)
.+.+ +++++|.+..
T Consensus 373 ~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 373 SSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EESCGGGCTTCBEEEEEEC
T ss_pred EEecCCCCCceEEEEEEeC
Confidence 5554 8899999764
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.53 E-value=4.4e-13 Score=152.54 Aligned_cols=176 Identities=11% Similarity=0.031 Sum_probs=113.4
Q ss_pred EEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCC-CCCCCeeeeeecCCCeEEEEEcCCCCEEE----EEeC
Q 003171 137 TIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGE-DGTAPFKESVKGVSSVMCMVGDEASGVVW----SGHR 211 (842)
Q Consensus 137 ~l~~~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~V~~la~dpdg~~La----SGs~ 211 (842)
++......++++...+++||+......... .+..... ....+. ..+....+|.+++|+|+|++|+ ||+.
T Consensus 43 avs~~~~~l~~~~~dgv~v~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 43 AVSNKYGLVFAGGASGLQIFPTKNLLIQNK-----PGDDPNKIVDKVQG-LLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp EEETTTTEEEEEETTEEEEEEHHHHCCCCC-----TTCCTTCEEECCCC-EEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred EEecCCCEEEEECCCEEEEEEchHhhhhcc-----cccCcccccccCcc-ccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 344445677776656699998743211100 0000000 000010 1111256799999999999999 8999
Q ss_pred CCcEEEEECCCCcc---CCCCCcceeEEecccCCcEEEEEEecC-CC-EEEeeCCCcEEEEeCCCccceeecCCCceeee
Q 003171 212 DGRIMCWKMNARLL---DSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (842)
Q Consensus 212 DGtIrlWdl~~g~~---~~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~ 286 (842)
|++|++||+.++.. .....+.....+.+|.+.|++|+|+|+ +. |+||+.||+|++||+.++.......
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~------- 189 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL------- 189 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-------
T ss_pred CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-------
Confidence 99999999865300 000112234567899999999999998 55 7899999999999997642211100
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
+| ...+.+++.++++..+++++ +++|++||++ ++...++
T Consensus 190 ------------~~----------~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~ 229 (434)
T 2oit_A 190 ------------PS----------TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVI 229 (434)
T ss_dssp ------------CG----------GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEE
T ss_pred ------------CC----------CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccccc
Confidence 11 34678889998888888877 6799999998 5554443
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.49 E-value=2.3e-12 Score=142.19 Aligned_cols=271 Identities=11% Similarity=0.045 Sum_probs=153.1
Q ss_pred EEEcCCCCEEEEEeC-CCc--EEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCc
Q 003171 197 MVGDEASGVVWSGHR-DGR--IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAI 272 (842)
Q Consensus 197 la~dpdg~~LaSGs~-DGt--IrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~ 272 (842)
.+|+|||+.|+.++. ||. |.+||+.++ +......+|...+.+++|||||+ |+.++.++.|++||+.++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--------~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g 112 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--------VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL 112 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTC--------EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCC--------ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 679999999999887 774 778898886 44444566766666788999998 888889999999999876
Q ss_pred cceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEE----------------------e-
Q 003171 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS----------------------A- 329 (842)
Q Consensus 273 ~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s----------------------~- 329 (842)
+.............. . ....++++..++. .
T Consensus 113 ~~~~~~~~~~~~~~~--------------------------~-~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 113 EENVVYQVPAEWVGY--------------------------G-TWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp CEEEEEECCTTEEEE--------------------------E-EEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred cceeeeechhhcccc--------------------------c-ceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 533211111110000 0 0111233333321 1
Q ss_pred CCCcEEEEEccCCcEEEEeecCCceEeeeeccc-CCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEE
Q 003171 330 GFLSFALWDARTRELLKVFNIDGQIENRVDMSL-LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (842)
Q Consensus 330 s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~ 408 (842)
....|.+||+.+++......... ....+.+++ .... +........... ...++.
T Consensus 166 ~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~sp~dg~~-------l~~~~~~~~~~~-----------------~~~l~~ 220 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVILQENQ-WLGHPIYRPYDDST-------VAFCHEGPHDLV-----------------DARMWL 220 (388)
T ss_dssp CCEEEEEEETTTCCEEEEEEESS-CEEEEEEETTEEEE-------EEEEECSCTTTS-----------------SCSEEE
T ss_pred CcceEEEEECCCCceEEeecCCc-cccccEECCCCCCE-------EEEEEecCCCCC-----------------cceEEE
Confidence 12468999999998755443322 222333333 2111 001111000000 001222
Q ss_pred EeecC----ccccCC--CceEEEEECCCCc-EEEEeC-CC----eEEEEcC-CCCe--eeeeecCCccE-----EEEEec
Q 003171 409 VAAKG----GFGDDN--RRTEALTTSIDGM-IWTGGA-NG----LLLQWDP-NGNR--LQDFQYLPFAV-----QCLCTF 468 (842)
Q Consensus 409 v~~~g----~~~~~~--~~v~al~~s~dg~-l~Sgs~-Dg----tIrlWD~-~g~~--l~~l~~H~~~V-----~sls~d 468 (842)
+...+ .+..+. ..+..+++||||+ |+..+. ++ .|.+||+ +|+. +..+.++.... ..+++|
T Consensus 221 ~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd 300 (388)
T 3pe7_A 221 INEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD 300 (388)
T ss_dssp EETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE
T ss_pred EeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC
Confidence 22111 122222 2466788999998 654442 22 4999999 5653 33333311111 157899
Q ss_pred CCEEEEE---------ecCcEEEEEeCCCccccccccccc-----------CEEEEE--eCCCEEEEEc-CCCCeeeccc
Q 003171 469 GSQIWVG---------YMNGIVQVLDLEGNLLGGWVAHSS-----------PVIKMA--VGAGYIFTLA-NHGGIRGWNV 525 (842)
Q Consensus 469 G~~LasG---------s~DgtIrlWD~~g~~i~~l~gH~~-----------~V~sla--~dg~~l~S~S-~DgtIrvWd~ 525 (842)
|++|+.. ..+..|.+||+++..+..+..|.. .+.+++ +||+.|+..+ .++...+|.+
T Consensus 301 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 301 GSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp ECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 9977753 446799999998665566666665 455544 6888877555 5788888876
Q ss_pred cC
Q 003171 526 TS 527 (842)
Q Consensus 526 ~~ 527 (842)
..
T Consensus 381 ~l 382 (388)
T 3pe7_A 381 TL 382 (388)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.47 E-value=8.2e-13 Score=159.09 Aligned_cols=315 Identities=8% Similarity=-0.023 Sum_probs=168.6
Q ss_pred EEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec--CCCeEEEEEcCCCCEEEEEeC---------CCc
Q 003171 146 WAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG--VSSVMCMVGDEASGVVWSGHR---------DGR 214 (842)
Q Consensus 146 ~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~V~~la~dpdg~~LaSGs~---------DGt 214 (842)
+.+.|++|++||+++..... +.. .+. ...|.+++|||||++|++++. |++
T Consensus 31 ~~~~d~~i~~~~~~~g~~~~------------------~~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~ 91 (719)
T 1z68_A 31 HQSADNNIVLYNIETGQSYT------------------ILS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT 91 (719)
T ss_dssp EECTTSCEEEEESSSCCEEE------------------EEC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred EEcCCCCEEEEEcCCCcEEE------------------EEc-cccccccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence 34568999999997654321 101 010 114889999999999999987 799
Q ss_pred EEEEECCCCccCCCCCccee--EEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEe
Q 003171 215 IMCWKMNARLLDSDDGFGEV--LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (842)
Q Consensus 215 IrlWdl~~g~~~~~~~~~~~--~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~ 291 (842)
|++||+.++ +.+ ..+ .+.|.+++|||||+ |++++ |++|++|++.+++.. .+.........
T Consensus 92 i~~~d~~~g--------~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~-~l~~~~~~~~v---- 154 (719)
T 1z68_A 92 YYIYDLSNG--------EFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF-QITFNGRENKI---- 154 (719)
T ss_dssp EEEEETTTT--------EECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE-ECCCCCBTTTE----
T ss_pred EEEEECCCC--------ccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE-EEecCCCcCCe----
Confidence 999999986 221 222 35688999999998 77665 789999999775432 12111100000
Q ss_pred eceeecccceeccceee-eecCCEEEEEEcCCCCEEEEeCC-----------------------------------CcEE
Q 003171 292 RSYIDLRSHLSVNGFSS-ILTSDIKNLLSDHSRAKVWSAGF-----------------------------------LSFA 335 (842)
Q Consensus 292 ~s~~~l~~~~~~~~~~~-~~s~~v~~las~~~~~~v~s~s~-----------------------------------~tI~ 335 (842)
+.++ ...+-. -.......++.++++..|+.++. .+|+
T Consensus 155 -----~~g~--~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~ 227 (719)
T 1z68_A 155 -----FNGI--PDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIF 227 (719)
T ss_dssp -----EESS--CCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEE
T ss_pred -----Eccc--ccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEE
Confidence 0000 000000 00000123444555555554431 1678
Q ss_pred EEEccCCcEE---EE-----eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEE
Q 003171 336 LWDARTRELL---KV-----FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVR 407 (842)
Q Consensus 336 lWD~~tg~~l---~~-----l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~ 407 (842)
+||+.+++.+ .. +..+......+.++++.... +....+... .. .++
T Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~--------~~~~~~~~~-~~-----------------~l~ 281 (719)
T 1z68_A 228 IIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVC--------LQWLKRVQN-VS-----------------VLS 281 (719)
T ss_dssp EEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEE--------EEEEESSTT-EE-----------------EEE
T ss_pred EEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEE--------EEEeccccC-eE-----------------EEE
Confidence 9999887642 11 11222222333444321100 000000000 00 011
Q ss_pred EEe----e-cC----cc----ccCCCceE-----EEEECCCCc-EEE--EeCCC--eEEEEcCCCCeeeeeecCCccEEE
Q 003171 408 RVA----A-KG----GF----GDDNRRTE-----ALTTSIDGM-IWT--GGANG--LLLQWDPNGNRLQDFQYLPFAVQC 464 (842)
Q Consensus 408 ~v~----~-~g----~~----~~~~~~v~-----al~~s~dg~-l~S--gs~Dg--tIrlWD~~g~~l~~l~~H~~~V~s 464 (842)
.+. . .| .+ ..+...+. .++++|||+ ++. ...+| .|.+||+.+...+.+..+...|..
T Consensus 282 ~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~ 361 (719)
T 1z68_A 282 ICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAIN 361 (719)
T ss_dssp EEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEE
T ss_pred EEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEE
Confidence 111 1 01 11 12333444 678999997 433 33454 688889865446677766666665
Q ss_pred EE-ecCCEEEEEecC-----cEEEEEeCC---Cc----ccc-cccccccCEEEEE--eCCCEEE-EEcCC--CCeeeccc
Q 003171 465 LC-TFGSQIWVGYMN-----GIVQVLDLE---GN----LLG-GWVAHSSPVIKMA--VGAGYIF-TLANH--GGIRGWNV 525 (842)
Q Consensus 465 ls-~dG~~LasGs~D-----gtIrlWD~~---g~----~i~-~l~gH~~~V~sla--~dg~~l~-S~S~D--gtIrvWd~ 525 (842)
+. .+|+.|+..+.+ ++++||.+. +. ++. .+.+|...+..+. +|+++++ +++.+ ..+.+|++
T Consensus 362 ~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 362 IFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp EEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred EEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence 42 288877766654 889999753 32 222 1344777777665 5677655 45544 46788887
Q ss_pred cCCC
Q 003171 526 TSPG 529 (842)
Q Consensus 526 ~~~~ 529 (842)
.+..
T Consensus 442 ~~g~ 445 (719)
T 1z68_A 442 RTDQ 445 (719)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6543
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.45 E-value=1.7e-11 Score=134.41 Aligned_cols=254 Identities=9% Similarity=0.092 Sum_probs=150.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee-CCCcE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRD----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGI 264 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~D----GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtI 264 (842)
...+..++++|+|++|++++.+ +.|++|+++... ..+..+.....|......+++ +|+ |++++ .+++|
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~----g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK----GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSI 122 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT----TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC----CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEE
Confidence 4567779999999999999986 799999886521 011223334445567778888 776 66554 68999
Q ss_pred EEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCC
Q 003171 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTR 342 (842)
Q Consensus 265 rvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg 342 (842)
.+|++.......... .. . ...+.+.... ......+..+++++++..++.+. ++.|.+|++...
T Consensus 123 ~~~~~~~~g~~~~~~---~~---~-------~~~g~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~ 187 (361)
T 3scy_A 123 TVFPIGQDGALLPAS---DV---I-------EFKGSGPDKE--RQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN 187 (361)
T ss_dssp EEEEBCTTSCBCSCS---EE---E-------ECCCCCSCTT--TCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEEeCCCCcCcccc---ee---E-------EccCCCCCcc--ccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence 999996532111100 00 0 0000000000 00022356688888888666554 468999987643
Q ss_pred cE------EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccc
Q 003171 343 EL------LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (842)
Q Consensus 343 ~~------l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~ 416 (842)
.. +.... .. . ... .
T Consensus 188 ~~~~~~~~l~~~~---~~------------------~--~~~-------------------------------------~ 207 (361)
T 3scy_A 188 ANADNKEKFLTKG---TP------------------E--AFK-------------------------------------V 207 (361)
T ss_dssp CCTTTCCCCEEEE---EE------------------E--EEE-------------------------------------C
T ss_pred CCcccccceeecc---cc------------------c--cee-------------------------------------c
Confidence 21 00000 00 0 000 0
Q ss_pred cCCCceEEEEECCCCc-EEEEe-CCCeEEEEcC-CCCe--eeeeec---CCccEEEE--EecCCEEEEEecC--cEEEEE
Q 003171 417 DDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP-NGNR--LQDFQY---LPFAVQCL--CTFGSQIWVGYMN--GIVQVL 484 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~-l~Sgs-~DgtIrlWD~-~g~~--l~~l~~---H~~~V~sl--s~dG~~LasGs~D--gtIrlW 484 (842)
.....+..++|+|||+ +++++ .+++|.+||+ +|+. ++.+.. +...+.++ ++||++|+++..+ ++|.+|
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 1112345688999997 66666 6899999999 5643 333322 33345555 5689999776654 899999
Q ss_pred eCC---Cc--ccccccccccCEEEEE--eCCCEEEEEc-CCCCeeecccc
Q 003171 485 DLE---GN--LLGGWVAHSSPVIKMA--VGAGYIFTLA-NHGGIRGWNVT 526 (842)
Q Consensus 485 D~~---g~--~i~~l~gH~~~V~sla--~dg~~l~S~S-~DgtIrvWd~~ 526 (842)
++. |+ .+..+.. ...+.+++ +||++|+.++ .++.|++|.+.
T Consensus 288 ~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 288 KVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 974 44 3344433 34556665 5788888776 67899998754
No 164
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.45 E-value=1.6e-11 Score=133.77 Aligned_cols=206 Identities=12% Similarity=0.041 Sum_probs=128.6
Q ss_pred CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCccCCCCCcceeEEecc---------cCCcEEEEEEecCCCEE-Eee
Q 003171 191 VSSVMCMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSWQA---------HRGPVLSLCISSYGDLW-SGS 259 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs-~DGtIrlWdl~~g~~~~~~~~~~~~~l~g---------H~~~V~slafs~dG~L~-SgS 259 (842)
...+.+++++|+|++|++++ .+++|++|++.... ....+..+.. +...+.+++|+|||+|+ ++.
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g-----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~ 159 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADG-----ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL 159 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTS-----CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCC-----CeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence 45678899999999999888 67899999986320 1122222211 12358999999999964 666
Q ss_pred CCCcEEEEeCCC-ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEE
Q 003171 260 EGGGIKIWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFAL 336 (842)
Q Consensus 260 ~DgtIrvWd~~t-~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~l 336 (842)
.++.|++|++.. ++... ...+ .. . .......+++++++..++.+. ++.|.+
T Consensus 160 ~~~~v~~~~~~~~g~~~~--------~~~~-------~~----~-------~g~~p~~~~~spdg~~l~v~~~~~~~v~v 213 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSE--------QSVL-------TM----E-------AGFGPRHLVFSPDGQYAFLAGELSSQIAS 213 (347)
T ss_dssp TTTEEEEEEECTTSCEEE--------EEEE-------EC----C-------TTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCEEEEEEECCCCcEEE--------eeeE-------Ec----C-------CCCCCceEEECCCCCEEEEEeCCCCEEEE
Confidence 789999999962 21100 0000 00 0 011345678888888666643 467999
Q ss_pred EEccC--CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCc
Q 003171 337 WDART--RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG 414 (842)
Q Consensus 337 WD~~t--g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~ 414 (842)
|++.. +++..... ..... . .
T Consensus 214 ~~~~~~~g~~~~~~~---------------------------~~~~~-~------------------------------~ 235 (347)
T 3hfq_A 214 LKYDTQTGAFTQLGI---------------------------VKTIP-A------------------------------D 235 (347)
T ss_dssp EEEETTTTEEEEEEE---------------------------EESSC-T------------------------------T
T ss_pred EEecCCCCceEEeee---------------------------eeecC-C------------------------------C
Confidence 98864 44311100 00000 0 0
Q ss_pred cccCCCceEEEEECCCCc-E-EEEeCCCeEEEEcCC--C--CeeeeeecCCccEEEEE--ecCCEEEEEec-CcEEEEEe
Q 003171 415 FGDDNRRTEALTTSIDGM-I-WTGGANGLLLQWDPN--G--NRLQDFQYLPFAVQCLC--TFGSQIWVGYM-NGIVQVLD 485 (842)
Q Consensus 415 ~~~~~~~v~al~~s~dg~-l-~Sgs~DgtIrlWD~~--g--~~l~~l~~H~~~V~sls--~dG~~LasGs~-DgtIrlWD 485 (842)
+ .....+..++++|||+ | +++..+++|.+||++ | +.+..+..|...+.+++ +||++|++++. +++|.+|+
T Consensus 236 ~-~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 236 Y-TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp C-CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred C-CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 0 0112356788999997 5 455668999999984 3 44555666666666654 57999988876 48999995
Q ss_pred C
Q 003171 486 L 486 (842)
Q Consensus 486 ~ 486 (842)
+
T Consensus 315 ~ 315 (347)
T 3hfq_A 315 R 315 (347)
T ss_dssp E
T ss_pred E
Confidence 4
No 165
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.43 E-value=6e-12 Score=135.45 Aligned_cols=222 Identities=12% Similarity=0.137 Sum_probs=137.6
Q ss_pred EEEEEeCCCcEEEEECCC-CccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCC-CcEEEEeCC--CccceeecC
Q 003171 205 VVWSGHRDGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG-GGIKIWPWE--AIEKALSLK 279 (842)
Q Consensus 205 ~LaSGs~DGtIrlWdl~~-g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D-gtIrvWd~~--t~~~~l~~~ 279 (842)
++++++.|++|++|+++. +. ........|...+.+++|+|+|+ |++++.+ ++|++|+++ ++....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~--- 76 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA-------LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF--- 76 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC-------EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE---
T ss_pred EEEeCCCCCeEEEEEECCCCc-------EEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee---
Confidence 444558899999999863 21 12233346788899999999998 7777766 999999986 322110
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEee
Q 003171 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENR 357 (842)
Q Consensus 280 ~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (842)
...+ .. ...+..+++++++..++.++ ++.|.+||+.++........
T Consensus 77 -----~~~~---------~~-----------~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~------- 124 (343)
T 1ri6_A 77 -----AAES---------AL-----------PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV------- 124 (343)
T ss_dssp -----EEEE---------EC-----------SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE-------
T ss_pred -----cccc---------cc-----------CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc-------
Confidence 0000 00 11345677778888776654 45799999853321111000
Q ss_pred eecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEE
Q 003171 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (842)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sg 436 (842)
.. ....+.+++++|||. ++++
T Consensus 125 -------------------~~---------------------------------------~~~~~~~~~~s~dg~~l~~~ 146 (343)
T 1ri6_A 125 -------------------VE---------------------------------------GLDGCHSANISPDNRTLWVP 146 (343)
T ss_dssp -------------------EC---------------------------------------CCTTBCCCEECTTSSEEEEE
T ss_pred -------------------cc---------------------------------------CCCCceEEEECCCCCEEEEe
Confidence 00 001134567889986 7776
Q ss_pred e-CCCeEEEEcC-C-CCeee----eeec-CCccEEEEE--ecCCEEEEEe-cCcEEEEEeCC---Ccc--ccccc----c
Q 003171 437 G-ANGLLLQWDP-N-GNRLQ----DFQY-LPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLE---GNL--LGGWV----A 496 (842)
Q Consensus 437 s-~DgtIrlWD~-~-g~~l~----~l~~-H~~~V~sls--~dG~~LasGs-~DgtIrlWD~~---g~~--i~~l~----g 496 (842)
+ .++.|++||+ + ++... .+.. ....+.+++ ++|++|++++ .++.|++||+. +++ ..... +
T Consensus 147 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~ 226 (343)
T 1ri6_A 147 ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN 226 (343)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred cCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc
Confidence 6 7899999999 4 54432 2232 234566664 5788776655 78999999984 322 22221 2
Q ss_pred c--ccCEEEEE--eCCCEEE-EEcCCCCeeecccc
Q 003171 497 H--SSPVIKMA--VGAGYIF-TLANHGGIRGWNVT 526 (842)
Q Consensus 497 H--~~~V~sla--~dg~~l~-S~S~DgtIrvWd~~ 526 (842)
| ...+.+++ +++++++ +.+.|+.|++|++.
T Consensus 227 ~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 227 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 2 23455665 4677776 66789999999976
No 166
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.43 E-value=1.4e-10 Score=141.80 Aligned_cols=352 Identities=15% Similarity=0.234 Sum_probs=213.8
Q ss_pred ceeEEEEecC-CEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 133 CFLRTIVCTE-EQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 133 ~~~~~l~~~~-~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
..+++|..+. +.||+|++++|.+||..+...... .. ....+ ..+. ...|.++..|++| .||.|+.
T Consensus 263 ~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~--------~~--~~~~~--~~l~-~~~i~~i~~D~~g-~lWigt~ 328 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASY--------SS--NPVEN--GSLS-QRSVRSIFMDSQG-GMWLGTY 328 (795)
T ss_dssp SBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEE--------CC--CTTST--TSCS-SSCEEEEEECTTS-CEEEEES
T ss_pred CeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEE--------ec--CCCCC--CCCC-CCcEEEEEEeCCc-CEEEEEC
Confidence 4688888874 499999988999999865322110 00 00001 1233 5689999999765 5899999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEec---c-cCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQ---A-HRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~---g-H~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
++-|..|+..++. +....... + ....|.+++.+++|.||.|+.++.|..|+..+... .......
T Consensus 329 ~~Gl~~~~~~~~~------~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~--~~~~~~~---- 396 (795)
T 4a2l_A 329 FGGLNYYHPIRNR------FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF--TSYTLQE---- 396 (795)
T ss_dssp SSCEEEECGGGGS------SEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE--EEECCC-----
T ss_pred CCCeEEeCCCccc------ceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE--EEEecCC----
Confidence 8888888865531 11111000 0 24579999999999999999999999999865321 1100000
Q ss_pred EEEeeceeecccceecccee-eeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCCceEeeeecccCCC
Q 003171 288 LIVERSYIDLRSHLSVNGFS-SILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~-~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (842)
.... .++...|.+++.+..+..||.++. +++.++|..++++.. +..... .++.
T Consensus 397 ----------------~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~-----~l~~--- 451 (795)
T 4a2l_A 397 ----------------DESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNS-----QLVN--- 451 (795)
T ss_dssp ---------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTTTS-----CCSC---
T ss_pred ----------------CCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecCCC-----CcCC---
Confidence 0000 112456778887766655999885 789999999987633 221100 0000
Q ss_pred cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec-Ccccc----------CCCceEEEEECCCCcEE
Q 003171 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GGFGD----------DNRRTEALTTSIDGMIW 434 (842)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~-g~~~~----------~~~~v~al~~s~dg~l~ 434 (842)
..+. ++. .+.....|+|+..|+.++... +.+.. ....|.++..+++|.||
T Consensus 452 ----~~v~--------------~i~-~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW 512 (795)
T 4a2l_A 452 ----ENVY--------------AIL-PDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLW 512 (795)
T ss_dssp ----SCEE--------------EEE-ECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEE
T ss_pred ----CeeE--------------EEE-ECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEE
Confidence 0000 000 111235677777788777642 22211 12568889999999999
Q ss_pred EEeCCCeEEEEcC-CCCeeeeee-------cCCccEEEEEecC-CEEEEEecCcEEEEEeCCCccccccc----ccccCE
Q 003171 435 TGGANGLLLQWDP-NGNRLQDFQ-------YLPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEGNLLGGWV----AHSSPV 501 (842)
Q Consensus 435 Sgs~DgtIrlWD~-~g~~l~~l~-------~H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g~~i~~l~----gH~~~V 501 (842)
.|+.+| |.+||. +++. .+. .+...|.++..|. ..||.|+.. .|..||.++.....+. ...+.|
T Consensus 513 igt~~G-l~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i 588 (795)
T 4a2l_A 513 IGGEEG-LSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVV 588 (795)
T ss_dssp EEESSC-EEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCE
T ss_pred EEeCCc-eEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhhe
Confidence 999855 889998 4443 332 2446799998864 368888876 7889998744322221 234579
Q ss_pred EEEEeCCCEEEEEcCCCCeeeccccC-----CCCCcchhhhhhcccccccccccceeEEEEEEE
Q 003171 502 IKMAVGAGYIFTLANHGGIRGWNVTS-----PGPLDSILCKELAGKEFLYTRMENLKILAGTWN 560 (842)
Q Consensus 502 ~sla~dg~~l~S~S~DgtIrvWd~~~-----~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twN 560 (842)
.++..|.+.-++.+++++|..|+..+ +...+++...++..........+. +++++-|
T Consensus 589 ~~i~~d~~g~lWi~t~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~--l~~g~~~ 650 (795)
T 4a2l_A 589 YGILEDSFGRLWLSTNRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQ--MYFGGIN 650 (795)
T ss_dssp EEEEECTTSCEEEEETTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSC--EEEEETT
T ss_pred EEEEECCCCCEEEEcCCceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCe--EEEecCC
Confidence 99988765555666678888888543 334455554444333333334444 7777754
No 167
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.42 E-value=3.2e-11 Score=131.37 Aligned_cols=250 Identities=11% Similarity=0.050 Sum_probs=163.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCccCCCCCcceeEEec-ccCCcEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRD------------------------GRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVL 245 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~D------------------------GtIrlWdl~~g~~~~~~~~~~~~~l~-gH~~~V~ 245 (842)
-+.|.+|+++|+|+++++.+.+ ++|.+||..++ +....+. ++-....
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~p~ 94 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--------EILQSSGKNLFYLPH 94 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--------CEEEEECTTTCSSEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--------eEEeccCCCccCCce
Confidence 4579999999999999998888 57999999876 3344443 5567889
Q ss_pred EEEEecCCCEE-EeeCCCcEEEEeCCCcc-ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-C
Q 003171 246 SLCISSYGDLW-SGSEGGGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-S 322 (842)
Q Consensus 246 slafs~dG~L~-SgS~DgtIrvWd~~t~~-~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~ 322 (842)
+|+++++|+|+ +.+.++.|++|+.++.. ....+..... .+...+ .-.....+++++ +
T Consensus 95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~----------------~g~~~~----~~~~P~~ia~~~~~ 154 (329)
T 3fvz_A 95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ----------------PGSDQN----HFCQPTDVAVEPST 154 (329)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB----------------CCCSTT----CCSSEEEEEECTTT
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC----------------CCCCcc----ccCCCcEEEEeCCC
Confidence 99999999964 77778999999986532 1111100000 000000 012356788887 5
Q ss_pred CCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEE
Q 003171 323 RAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (842)
Q Consensus 323 ~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~ 400 (842)
+..+++.+ ...|++|| .+|+++..+...+.. ..
T Consensus 155 g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~----------------------------~~---------------- 189 (329)
T 3fvz_A 155 GAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSG----------------------------SS---------------- 189 (329)
T ss_dssp CCEEEEECSSCCEEEEEC-TTSCEEEEECEECCS----------------------------SS----------------
T ss_pred CeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCC----------------------------CC----------------
Confidence 55555553 46799999 567766554321100 00
Q ss_pred ecCCcEEEEeecCccccCCCceEEEEECCC-CcEE-EEeCCCeEEEEcCC-CCeeeeee--cCCccEEEEEe--------
Q 003171 401 GAADAVRRVAAKGGFGDDNRRTEALTTSID-GMIW-TGGANGLLLQWDPN-GNRLQDFQ--YLPFAVQCLCT-------- 467 (842)
Q Consensus 401 g~~~~v~~v~~~g~~~~~~~~v~al~~s~d-g~l~-Sgs~DgtIrlWD~~-g~~l~~l~--~H~~~V~sls~-------- 467 (842)
....+......++++++ |.|+ +...++.|++||.+ |+.+.++. .+...+.++++
T Consensus 190 -------------~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~ 256 (329)
T 3fvz_A 190 -------------PRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV 256 (329)
T ss_dssp -------------CCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEE
T ss_pred -------------CCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEe
Confidence 00001123456888888 7765 44568899999995 99988884 35556666644
Q ss_pred cCCEEEEEecCcEEEEEeCC-Ccccccc---cccccCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 468 FGSQIWVGYMNGIVQVLDLE-GNLLGGW---VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 468 dG~~LasGs~DgtIrlWD~~-g~~i~~l---~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
+|+..++.+.+.+|++||.. |+++.++ .+|...+.+|+. +|..+++.+.++.|++|++.
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 33322233345699999976 7877776 477788999885 66677888899999999965
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.39 E-value=6.4e-12 Score=138.85 Aligned_cols=238 Identities=9% Similarity=0.045 Sum_probs=147.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCccCCCCCcceeEEecccC--CcEEEEEEecCCC--E-EEee------
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMN-ARLLDSDDGFGEVLSWQAHR--GPVLSLCISSYGD--L-WSGS------ 259 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~-~g~~~~~~~~~~~~~l~gH~--~~V~slafs~dG~--L-~SgS------ 259 (842)
..+..++++|+|++|++++.+ +|++|++. ++ +...... |. +.+.+++|+|||+ + ++++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g--------~~~~~~~-~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~ 109 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT--------EIVHEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAV 109 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT--------EEEEEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCE
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCC--------CEEEeeE-eecCCCCccEEECCCCCEEEEEEecCCccee
Confidence 357789999999999999998 99999987 55 3322221 21 2355689999998 3 4553
Q ss_pred -------CCCcEEEEeCCC-ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-
Q 003171 260 -------EGGGIKIWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG- 330 (842)
Q Consensus 260 -------~DgtIrvWd~~t-~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s- 330 (842)
.++++++|++.. ++..... ..+ . + . ....+..+++++++..++++.
T Consensus 110 ~~~~~~~~~g~v~v~~~~~~g~~~~~~-------~~~-------~---~--~------~~~~~~~~~~spdG~~l~~~~~ 164 (365)
T 1jof_A 110 YANPFYKFAGYGNVFSVSETGKLEKNV-------QNY-------E---Y--Q------ENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp EEEEESSSCCEEEEEEECTTCCEEEEE-------EEE-------E---C--C------TTCCEEEEEECTTSSEEEEEET
T ss_pred ccceeecCCceEEEEccCCCCcCcceE-------eeE-------E---e--C------CCCcceEEEECCCCCEEEEEcC
Confidence 699999999863 2211000 000 0 0 0 023456778888888777654
Q ss_pred -CCcEEEEEcc-CCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEE
Q 003171 331 -FLSFALWDAR-TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (842)
Q Consensus 331 -~~tI~lWD~~-tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~ 408 (842)
.+.|++||+. +|++..... ..
T Consensus 165 ~~~~v~~~~~~~~g~~~~~~~---------------------------~~------------------------------ 187 (365)
T 1jof_A 165 TANKLWTHRKLASGEVELVGS---------------------------VD------------------------------ 187 (365)
T ss_dssp TTTEEEEEEECTTSCEEEEEE---------------------------EE------------------------------
T ss_pred CCCEEEEEEECCCCCEEEeee---------------------------Ee------------------------------
Confidence 4689999997 676421100 00
Q ss_pred EeecCccccCCCceEEEEECCCCc-EEEEeC-CCeEEEEcC---CCCee---eeee-------cCCc------cEEEEE-
Q 003171 409 VAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLLLQWDP---NGNRL---QDFQ-------YLPF------AVQCLC- 466 (842)
Q Consensus 409 v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~-DgtIrlWD~---~g~~l---~~l~-------~H~~------~V~sls- 466 (842)
+..+...+..++++|||+ +++++. +++|.+|+. +|+.. +.+. +|.. .+..++
T Consensus 188 ------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 188 ------APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp ------CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred ------cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence 000112345688999997 666664 689999975 36542 2221 2232 465555
Q ss_pred --ecCCEEEEEecC-c-----EEEEEeCC--Ccccc---cccccccCEE--EEEe---CCCEEEEEcCC-CCeeeccccC
Q 003171 467 --TFGSQIWVGYMN-G-----IVQVLDLE--GNLLG---GWVAHSSPVI--KMAV---GAGYIFTLANH-GGIRGWNVTS 527 (842)
Q Consensus 467 --~dG~~LasGs~D-g-----tIrlWD~~--g~~i~---~l~gH~~~V~--sla~---dg~~l~S~S~D-gtIrvWd~~~ 527 (842)
+||++|+++..+ . +|++|+++ |++.. ....+...+. ++.+ ||++|++++.+ ++|++|++..
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 689999887653 2 89999984 55432 1222333333 3457 79999988865 8999999753
No 169
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.37 E-value=3.7e-10 Score=123.75 Aligned_cols=227 Identities=9% Similarity=0.077 Sum_probs=132.4
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCccCCCCCcceeEEecc--------cCCcEEEEEEecCCC-EE-EeeC
Q 003171 192 SSVMCMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSWQA--------HRGPVLSLCISSYGD-LW-SGSE 260 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs-~DGtIrlWdl~~g~~~~~~~~~~~~~l~g--------H~~~V~slafs~dG~-L~-SgS~ 260 (842)
.....+++ ++++|++++ .+++|.+|++..... ...........+ +...+.+++|+|||+ |+ ++..
T Consensus 100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 175 (361)
T 3scy_A 100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA--LLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG 175 (361)
T ss_dssp SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC--BCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc--CcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence 35566777 778777776 578999999975310 000011111111 233468999999998 65 5556
Q ss_pred CCcEEEEeCCCccc----e-eecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCc
Q 003171 261 GGGIKIWPWEAIEK----A-LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLS 333 (842)
Q Consensus 261 DgtIrvWd~~t~~~----~-l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~t 333 (842)
+++|++|+++.... . +.... ..... .+ ........+++++++..++.+. +++
T Consensus 176 ~~~v~v~~~~~~~~~~~~~~l~~~~---~~~~~-------~~-----------~~~~~~~~~~~spdg~~l~v~~~~~~~ 234 (361)
T 3scy_A 176 TDQIHKFNINPNANADNKEKFLTKG---TPEAF-------KV-----------APGSGPRHLIFNSDGKFAYLINEIGGT 234 (361)
T ss_dssp TTEEEEEEECTTCCTTTCCCCEEEE---EEEEE-------EC-----------CTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred CCEEEEEEEcCCCCcccccceeecc---cccce-------ec-----------CCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence 89999999865321 0 11000 00000 00 0012356688888888776655 568
Q ss_pred EEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecC
Q 003171 334 FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG 413 (842)
Q Consensus 334 I~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g 413 (842)
|.+||+.++++...... ..
T Consensus 235 v~v~~~~~g~~~~~~~~---------------------------~~---------------------------------- 253 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTV---------------------------AA---------------------------------- 253 (361)
T ss_dssp EEEEEEETTEEEEEEEE---------------------------ES----------------------------------
T ss_pred EEEEEecCCceEEeEEE---------------------------ec----------------------------------
Confidence 99999987754211100 00
Q ss_pred ccccCCCceEEEEECCCCc-EEEEeC--CCeEEEEcCC---CC--eeeeeecCCccEEEE--EecCCEEEEEe-cCcEEE
Q 003171 414 GFGDDNRRTEALTTSIDGM-IWTGGA--NGLLLQWDPN---GN--RLQDFQYLPFAVQCL--CTFGSQIWVGY-MNGIVQ 482 (842)
Q Consensus 414 ~~~~~~~~v~al~~s~dg~-l~Sgs~--DgtIrlWD~~---g~--~l~~l~~H~~~V~sl--s~dG~~LasGs-~DgtIr 482 (842)
...+......++++|||+ |+++.. +++|.+|+++ |+ .+..+.. ...+.++ ++||++|++++ .+++|.
T Consensus 254 -~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 254 -DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQ 331 (361)
T ss_dssp -CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEE
T ss_pred -CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEE
Confidence 001112235688999998 655554 4899999983 44 3444443 3445555 56899999888 579999
Q ss_pred EEe--CC-Ccccccc-cccccCEEEEEe
Q 003171 483 VLD--LE-GNLLGGW-VAHSSPVIKMAV 506 (842)
Q Consensus 483 lWD--~~-g~~i~~l-~gH~~~V~sla~ 506 (842)
+|+ .+ |++.... ..|...+.||.+
T Consensus 332 v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 332 IFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred EEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 964 44 5554332 345567777764
No 170
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.33 E-value=1.6e-10 Score=123.19 Aligned_cols=222 Identities=14% Similarity=0.081 Sum_probs=139.7
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEee-CCCcEEEEe
Q 003171 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~-~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd 268 (842)
.....+++++|+|+ ++|++..++.|..|+..+ . ...+..+.+.+.+|+++++|+||.+. .++.|.+||
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~---------~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG---------Q-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS---------C-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCC---------C-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 34577899999998 899999999999999887 3 45566778889999999999977555 468999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcE-------------
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSF------------- 334 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI------------- 334 (842)
..+++........ .+ .....+..++.++++..+++... ++.
T Consensus 97 ~~~g~~~~~~~~~----------------------~~---~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~ 151 (296)
T 3e5z_A 97 EPGGEWESIADSF----------------------EG---KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELP 151 (296)
T ss_dssp STTCCEEEEECEE----------------------TT---EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSS
T ss_pred CCCCcEEEEeecc----------------------CC---CCCCCCCCEEECCCCCEEEECCccccccccccccccccCC
Confidence 8654321100000 00 00112334566665543332110 010
Q ss_pred --EEEEccC-CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee
Q 003171 335 --ALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA 411 (842)
Q Consensus 335 --~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~ 411 (842)
.||.+.. +++ ..
T Consensus 152 ~~~l~~~~~~g~~--------------------------------------------------------------~~--- 166 (296)
T 3e5z_A 152 GRWVFRLAPDGTL--------------------------------------------------------------SA--- 166 (296)
T ss_dssp SCEEEEECTTSCE--------------------------------------------------------------EE---
T ss_pred CcEEEEECCCCCE--------------------------------------------------------------EE---
Confidence 1111100 110 00
Q ss_pred cCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCC--CCe---eeeeecCCccEEEEEe--cCCEEEEEecCcEEEE
Q 003171 412 KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN--GNR---LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQV 483 (842)
Q Consensus 412 ~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~--g~~---l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrl 483 (842)
+..+......++++|||+ +++.+.++.|.+||+. |+. .+.+..+...+.+++. +|+ ||++. ++.|.+
T Consensus 167 ---~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~-~~~v~~ 241 (296)
T 3e5z_A 167 ---PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA-GDGVHV 241 (296)
T ss_dssp ---EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE-TTEEEE
T ss_pred ---eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc-CCeEEE
Confidence 011223345688999998 5666677899999983 554 3344334445556665 465 66666 889999
Q ss_pred EeCCCcccccccccccCEEEEEe---CCCEEEEEcCCC
Q 003171 484 LDLEGNLLGGWVAHSSPVIKMAV---GAGYIFTLANHG 518 (842)
Q Consensus 484 WD~~g~~i~~l~gH~~~V~sla~---dg~~l~S~S~Dg 518 (842)
||.+|+.+..+..+.. +.++++ +++.|+.++.++
T Consensus 242 ~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 242 LTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp ECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred ECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 9999988888888877 777765 556777777664
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.31 E-value=1.4e-10 Score=137.92 Aligned_cols=103 Identities=15% Similarity=0.014 Sum_probs=70.2
Q ss_pred eEEEEECCCCcE-EEEeCCC--eEEEEcC-CCCeeeeeecCCcc--------EEEEE--ecCCEEEEEecCcEEEEE--e
Q 003171 422 TEALTTSIDGMI-WTGGANG--LLLQWDP-NGNRLQDFQYLPFA--------VQCLC--TFGSQIWVGYMNGIVQVL--D 485 (842)
Q Consensus 422 v~al~~s~dg~l-~Sgs~Dg--tIrlWD~-~g~~l~~l~~H~~~--------V~sls--~dG~~LasGs~DgtIrlW--D 485 (842)
+..++++|||++ +++..++ .|.+||+ .|+..+...++... +.+++ ++|+.+++++. ++++|| |
T Consensus 244 ~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 244 IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 456778999985 5666677 6777787 45554433333222 34454 46889999888 999999 6
Q ss_pred CCCcccccccccccCEEEE-EeCCCEEE--EEcCCCCeeeccc
Q 003171 486 LEGNLLGGWVAHSSPVIKM-AVGAGYIF--TLANHGGIRGWNV 525 (842)
Q Consensus 486 ~~g~~i~~l~gH~~~V~sl-a~dg~~l~--S~S~DgtIrvWd~ 525 (842)
+++..++.+..|.+.|.++ +++++.++ +.+.+....+|.+
T Consensus 323 ~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 323 PESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp TTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 6655578888888888888 78777543 5566665666654
No 172
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=1.9e-09 Score=131.49 Aligned_cols=355 Identities=15% Similarity=0.248 Sum_probs=212.1
Q ss_pred ceeEEEEecCC-EEEEecC-CCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 133 CFLRTIVCTEE-QLWAGGE-NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 133 ~~~~~l~~~~~-~l~~~~D-~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
..+++|..+.+ .||+|++ ++|.++|..+....... .... .+.. ....+ ..+. ...|.++..|++| .||.|+
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~-~~~f-~~~~-~~~~~--~~l~-~~~v~~i~~D~~g-~lWigt 330 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPE-QIRF-EFIR-EGDNN--YSLS-NASARYIFQDSFN-NIWIGT 330 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC----------C-EEEC-BCSST--TSBS-SSCEEEEEECSSC-CEEEEE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeee-cccc-cccc-CCCCC--CCCC-CCeEEEEEEeCCC-CEEEEe
Confidence 45788888755 9999988 89999998653211100 0000 0000 00000 1233 5689999999765 689999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEe-------cccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCce
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSW-------QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l-------~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~ 283 (842)
.++-|..++..++. +.....- .-....|.+++.+++|.||.|+.++.|.+|+..+.. +......
T Consensus 331 ~~~Gl~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~- 401 (781)
T 3v9f_A 331 WGGGINFISNAPPT------FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRV--AIYNKEN- 401 (781)
T ss_dssp BSSCEEEECSSCCS------CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEE--EECC----
T ss_pred cCCeEEEeCCCCCc------ceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCe--EEEccCC-
Confidence 88888888876531 1111100 002357999999999999999988889999975421 1111000
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCCceEeeeeccc
Q 003171 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (842)
Q Consensus 284 ~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (842)
...+...|.+++.++ ...||.++. +++..+|..++++.. +.... ...
T Consensus 402 -----------------------~~~~~~~v~~i~~d~-~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~-------~~~ 449 (781)
T 3v9f_A 402 -----------------------RELLSNSVLCSLKDS-EGNLWFGTYLGNISYYNTRLKKFQI-IELEK-------NEL 449 (781)
T ss_dssp -------------------------CCCSBEEEEEECT-TSCEEEEETTEEEEEECSSSCEEEE-CCSTT-------TCC
T ss_pred -----------------------CCCCCcceEEEEECC-CCCEEEEeccCCEEEEcCCCCcEEE-eccCC-------CCC
Confidence 011234577777764 457898885 689999998876532 21100 000
Q ss_pred CCCcccccceEEEEEecCCCCccceeeeEe-ecCcceEEecCCcEEEEeec-Ccccc----C-----CCceEEEEECCCC
Q 003171 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFF-QRSRNAIMGAADAVRRVAAK-GGFGD----D-----NRRTEALTTSIDG 431 (842)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~-~~~~~~~~g~~~~v~~v~~~-g~~~~----~-----~~~v~al~~s~dg 431 (842)
..+. .+. +.....|+|+..|+.++... +.+.. . ...|.++..+++|
T Consensus 450 -------~~v~----------------~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g 506 (781)
T 3v9f_A 450 -------LDVR----------------VFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG 506 (781)
T ss_dssp -------CCEE----------------EEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC
T ss_pred -------CeEE----------------EEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC
Confidence 0000 011 11234677877788777642 22221 1 3568899999999
Q ss_pred cEEEEeCCCeEEEEcCCCCeeeeeec----CCccEEEEEecC-CEEEEEecCcEEEEEeCCCccccccc----ccccCEE
Q 003171 432 MIWTGGANGLLLQWDPNGNRLQDFQY----LPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEGNLLGGWV----AHSSPVI 502 (842)
Q Consensus 432 ~l~Sgs~DgtIrlWD~~g~~l~~l~~----H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g~~i~~l~----gH~~~V~ 502 (842)
.||.|+.++-|..+|..+..++.+.. ....|.++..|. ..||.|+.+|-|..||.++.....+. .....|.
T Consensus 507 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~ 586 (781)
T 3v9f_A 507 RFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIR 586 (781)
T ss_dssp CEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCC
T ss_pred CEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceEE
Confidence 99999974448889996555555532 245789998864 37888888665499998744333322 2234688
Q ss_pred EEEeCCCEEEEEcCCCCeeeccccC-----CCCCcchhhhhhcccccccccccceeEEEEEEE
Q 003171 503 KMAVGAGYIFTLANHGGIRGWNVTS-----PGPLDSILCKELAGKEFLYTRMENLKILAGTWN 560 (842)
Q Consensus 503 sla~dg~~l~S~S~DgtIrvWd~~~-----~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twN 560 (842)
++..|.+..++.+++++|..++... +...+++...++..........+. +++++-|
T Consensus 587 ~i~~d~~g~lW~~t~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~--l~~g~~~ 647 (781)
T 3v9f_A 587 AISEDKNGNIWASTNTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGL--IYFGSIN 647 (781)
T ss_dssp EEEECSSSCEEEECSSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSC--EEEEETT
T ss_pred EEEECCCCCEEEEcCCceEEEECCCCceEEecccCCccccccccCceEECCCCE--EEEECCC
Confidence 8887765556666677788887543 334455555555444343334444 7777754
No 173
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.30 E-value=1.3e-11 Score=144.96 Aligned_cols=102 Identities=11% Similarity=-0.092 Sum_probs=81.2
Q ss_pred EEEEECCCCc-EEEEeCC----CeEEEEcCCCCeeeeeecCCccEEEE--EecCCEEEEEecCc--EEEEEeCC-Ccccc
Q 003171 423 EALTTSIDGM-IWTGGAN----GLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNG--IVQVLDLE-GNLLG 492 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs~D----gtIrlWD~~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~Dg--tIrlWD~~-g~~i~ 492 (842)
.++++||||+ |++++.| ++|++||+++..++.+..|...+.++ ++||++|+++..++ .|++||++ +++.
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~- 231 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE- 231 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-
Confidence 5788999998 6667666 78999999544455778888888876 46899999888888 99999998 4555
Q ss_pred cccccccCEEE----------EEeCCCEEEEEcCCCCeeeccc
Q 003171 493 GWVAHSSPVIK----------MAVGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 493 ~l~gH~~~V~s----------la~dg~~l~S~S~DgtIrvWd~ 525 (842)
.+.+|...|.+ .++||..+++++.|+++++|++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 232 DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 77778766543 3458888899999999999997
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.30 E-value=1.1e-10 Score=141.69 Aligned_cols=287 Identities=9% Similarity=0.003 Sum_probs=165.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCc-----EEEEEEecCCC-EEEeeCC-----
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGP-----VLSLCISSYGD-LWSGSEG----- 261 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~-----V~slafs~dG~-L~SgS~D----- 261 (842)
...+++|+|||++|+++ ||+|++||+.++ ++...+.+|... ..+++|||||+ |++++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYG--------NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR 87 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTC--------CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCC--------ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence 35578999999999997 999999999997 455667777643 34578999998 7777776
Q ss_pred ----CcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEE
Q 003171 262 ----GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALW 337 (842)
Q Consensus 262 ----gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lW 337 (842)
+.+.+||+.+++.. .+.. + ...+...+.+++|.+|+.+.+..|.+|
T Consensus 88 ~~~~~~~~~~d~~~~~~~-~l~~-------------------~----------~~~~~~~~~SPdG~~la~~~~~~i~~~ 137 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLI-TEER-------------------I----------PNNTQWVTWSPVGHKLAYVWNNDIYVK 137 (740)
T ss_dssp SCEEEEEEEEETTTTEEC-CSSC-------------------C----------CTTEEEEEECSSTTCEEEEETTEEEEE
T ss_pred EccceEEEEEECCCCcEE-Eccc-------------------C----------CCcceeeEECCCCCEEEEEECCeEEEE
Confidence 45569999875421 1111 0 224566778899998888888899999
Q ss_pred EccCCcEEEEeecCCc---eEe----------------eeecccCCCccc----ccc-eEEEEEecCCCC----ccceee
Q 003171 338 DARTRELLKVFNIDGQ---IEN----------------RVDMSLLPDFAM----EDE-FKTKIVTSSKKD----KAQSSF 389 (842)
Q Consensus 338 D~~tg~~l~~l~~~~~---~~~----------------~~~~s~~~~~~~----~~~-~~~~~~s~~~~~----~~~~s~ 389 (842)
|+.+++..+ +..++. +.+ .+.++++....+ ++. ++.+........ .....+
T Consensus 138 ~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 138 IEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp SSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred ECCCCceEE-EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 999988644 222221 100 122333322211 100 111000000000 000001
Q ss_pred eEeecCcceEEecCCc---EEEEeec----C---c---cc------cCCCceEEEEECCCCcE-EEEe----CCCeEEEE
Q 003171 390 GFFQRSRNAIMGAADA---VRRVAAK----G---G---FG------DDNRRTEALTTSIDGMI-WTGG----ANGLLLQW 445 (842)
Q Consensus 390 ~~~~~~~~~~~g~~~~---v~~v~~~----g---~---~~------~~~~~v~al~~s~dg~l-~Sgs----~DgtIrlW 445 (842)
.+.. .|..+. +..+... + . +. .+...+..+++||||++ +... .+..|++|
T Consensus 217 ~yp~------~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~ 290 (740)
T 4a5s_A 217 PYPK------AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDIC 290 (740)
T ss_dssp ECCB------TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEE
T ss_pred cCCC------CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEE
Confidence 1111 011111 1111111 1 0 11 25556788999999984 3332 23479999
Q ss_pred cC-CCC----eee--ee--ecCCccEE-------EEEecCCEEE-EEec-C--cEEEEEeCCCcccccccccccCEEEEE
Q 003171 446 DP-NGN----RLQ--DF--QYLPFAVQ-------CLCTFGSQIW-VGYM-N--GIVQVLDLEGNLLGGWVAHSSPVIKMA 505 (842)
Q Consensus 446 D~-~g~----~l~--~l--~~H~~~V~-------sls~dG~~La-sGs~-D--gtIrlWD~~g~~i~~l~gH~~~V~sla 505 (842)
|+ +|+ |.. ++ .+|..+|. .+++||+.|+ ..+. + ..|.+||++|.....++.....|..+.
T Consensus 291 d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~ 370 (740)
T 4a5s_A 291 DYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE 370 (740)
T ss_dssp EEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE
T ss_pred ECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE
Confidence 99 677 443 22 45666554 3567999776 6654 3 578999998765555555556676654
Q ss_pred -eCCCEEE-EEcC----CCCeeecccc
Q 003171 506 -VGAGYIF-TLAN----HGGIRGWNVT 526 (842)
Q Consensus 506 -~dg~~l~-S~S~----DgtIrvWd~~ 526 (842)
+|++.++ +++. -+...+|.+.
T Consensus 371 ~~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 371 ALTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp EECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEeCCEEEEEEecCCCCCceeEEEEEE
Confidence 7777666 4443 2445666654
No 175
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.29 E-value=1.3e-10 Score=128.20 Aligned_cols=240 Identities=7% Similarity=0.015 Sum_probs=141.2
Q ss_pred cCCEEEEecCCCEEEEeCC-CCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCC--EEEEEe-------
Q 003171 141 TEEQLWAGGENGLRVWNLK-ELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG--VVWSGH------- 210 (842)
Q Consensus 141 ~~~~l~~~~D~~vrvWdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~--~LaSGs------- 210 (842)
+++.|+++..++|++|++. ++..... ..... .+.+.+++++|+|+ ++++++
T Consensus 50 dg~~l~~~~~~~v~~~~~~~~g~~~~~-----------------~~~~~--~g~~~~~~~spdg~~l~~~~~~~~~~~~~ 110 (365)
T 1jof_A 50 ERKNIYGAAMKKWSSFAVKSPTEIVHE-----------------ASHPI--GGHPRANDADTNTRAIFLLAAKQPPYAVY 110 (365)
T ss_dssp TSSEEEEEEBTEEEEEEEEETTEEEEE-----------------EEEEC--CSSGGGGCTTSCCEEEEEEECSSTTCCEE
T ss_pred CCCEEEEEccceEEEEEECCCCCEEEe-----------------eEeec--CCCCccEEECCCCCEEEEEEecCCcceec
Confidence 4556777554499999986 4321100 00001 12345688999999 466664
Q ss_pred ------CCCcEEEEECCC-CccCCCCCcceeEEec----ccCCcEEEEEEecCCC-EEEee-CCCcEEEEeCC-Ccccee
Q 003171 211 ------RDGRIMCWKMNA-RLLDSDDGFGEVLSWQ----AHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWE-AIEKAL 276 (842)
Q Consensus 211 ------~DGtIrlWdl~~-g~~~~~~~~~~~~~l~----gH~~~V~slafs~dG~-L~SgS-~DgtIrvWd~~-t~~~~l 276 (842)
.+|++++|++.. + +....+. .|...+.+++|+|||+ |+++. .+++|++|+++ +++...
T Consensus 111 ~~~~~~~~g~v~v~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~ 182 (365)
T 1jof_A 111 ANPFYKFAGYGNVFSVSETG--------KLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL 182 (365)
T ss_dssp EEEESSSCCEEEEEEECTTC--------CEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred cceeecCCceEEEEccCCCC--------cCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE
Confidence 699999999974 3 2222222 2567899999999998 66554 46899999996 432110
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEcc--CCcEEEEeecCC
Q 003171 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDAR--TRELLKVFNIDG 352 (842)
Q Consensus 277 ~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~--tg~~l~~l~~~~ 352 (842)
...+ .... +....+.+++++++..++.+. +++|.+|+.. +|++...+..
T Consensus 183 --------~~~~-------~~~~----------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~-- 235 (365)
T 1jof_A 183 --------VGSV-------DAPD----------PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS-- 235 (365)
T ss_dssp --------EEEE-------ECSS----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE--
T ss_pred --------eeeE-------ecCC----------CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce--
Confidence 0000 0000 012356788888888887765 3678998764 5654211100
Q ss_pred ceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCC------CceEEEE
Q 003171 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN------RRTEALT 426 (842)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~------~~v~al~ 426 (842)
+.... . .+.++. ..+..++
T Consensus 236 ------------------------~~~~~-~------------------------------~~~g~~~~~~~~~~~~~i~ 260 (365)
T 1jof_A 236 ------------------------FPLIP-P------------------------------GIPDRDPETGKGLYRADVC 260 (365)
T ss_dssp ------------------------EESSC-T------------------------------TCCCBCTTTSSBSEEEEEE
T ss_pred ------------------------EEcCC-C------------------------------CcCCcccccccccccccEE
Confidence 00000 0 000011 1356788
Q ss_pred -ECCCCc-EEEEeC-CC-----eEEEEcC--CCCeee---eeecCCccEE--EEEe---cCCEEEEEec-CcEEEEEeCC
Q 003171 427 -TSIDGM-IWTGGA-NG-----LLLQWDP--NGNRLQ---DFQYLPFAVQ--CLCT---FGSQIWVGYM-NGIVQVLDLE 487 (842)
Q Consensus 427 -~s~dg~-l~Sgs~-Dg-----tIrlWD~--~g~~l~---~l~~H~~~V~--sls~---dG~~LasGs~-DgtIrlWD~~ 487 (842)
++|||+ |+++.. ++ +|++|++ +|+... .+..+...+. ++++ ||++|++++. +++|+||+++
T Consensus 261 ~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 261 ALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred EECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 999997 665553 23 8999998 355433 1222332223 4678 8999999886 4899999987
Q ss_pred Cc
Q 003171 488 GN 489 (842)
Q Consensus 488 g~ 489 (842)
++
T Consensus 341 ~~ 342 (365)
T 1jof_A 341 DE 342 (365)
T ss_dssp TT
T ss_pred hh
Confidence 54
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.28 E-value=7.7e-10 Score=120.38 Aligned_cols=206 Identities=11% Similarity=-0.024 Sum_probs=130.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe---------cccCCcEEEEEEec-CCCEE-Eee-
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW---------QAHRGPVLSLCISS-YGDLW-SGS- 259 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l---------~gH~~~V~slafs~-dG~L~-SgS- 259 (842)
.....++++|+|+++++.+.+++|++|+.++.. ..+..+ .+|-....+|+|+| +|.|+ +.+
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~ 163 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY 163 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-------EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC
Confidence 467889999999999999999999999987631 134444 35566789999999 78865 565
Q ss_pred CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEE
Q 003171 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALW 337 (842)
Q Consensus 260 ~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lW 337 (842)
.++.|++|+.+. .....+.. .+.........-.....+++++++..|+.+. ...|++|
T Consensus 164 ~~~~I~~~~~~g-~~~~~~~~-------------------~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~ 223 (329)
T 3fvz_A 164 CNSRIVQFSPSG-KFVTQWGE-------------------ESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF 223 (329)
T ss_dssp SCCEEEEECTTS-CEEEEECE-------------------ECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCeEEEEcCCC-CEEEEecc-------------------CCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence 589999999643 21111100 0000000000012346678887755555554 3579999
Q ss_pred EccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCcccc
Q 003171 338 DARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD 417 (842)
Q Consensus 338 D~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~ 417 (842)
|..+|+++.++......
T Consensus 224 ~~~~G~~~~~~~~~~~~--------------------------------------------------------------- 240 (329)
T 3fvz_A 224 KTDTKEFVREIKHASFG--------------------------------------------------------------- 240 (329)
T ss_dssp ETTTCCEEEEECCTTTT---------------------------------------------------------------
T ss_pred ECCCCcEEEEEeccccC---------------------------------------------------------------
Confidence 99999987766421100
Q ss_pred CCCceEEEEECC------CCcE-EEEeCCCeEEEEcC-CCCeeeeee---cCCccEEEEEe--cCCEEEEEecCcEEEEE
Q 003171 418 DNRRTEALTTSI------DGMI-WTGGANGLLLQWDP-NGNRLQDFQ---YLPFAVQCLCT--FGSQIWVGYMNGIVQVL 484 (842)
Q Consensus 418 ~~~~v~al~~s~------dg~l-~Sgs~DgtIrlWD~-~g~~l~~l~---~H~~~V~sls~--dG~~LasGs~DgtIrlW 484 (842)
..+.+++++| +|.+ ++.+.+.+|++||. +|+.+.++. ++...+..|++ +|..+++...+++|++|
T Consensus 241 --~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~ 318 (329)
T 3fvz_A 241 --RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF 318 (329)
T ss_dssp --TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred --CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence 0011112222 3332 23344668999998 799888873 56677888876 57566666678999999
Q ss_pred eCCCc
Q 003171 485 DLEGN 489 (842)
Q Consensus 485 D~~g~ 489 (842)
+++++
T Consensus 319 ~~~~~ 323 (329)
T 3fvz_A 319 TLTEK 323 (329)
T ss_dssp EEEEC
T ss_pred eCCcc
Confidence 98754
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.26 E-value=7.5e-10 Score=122.55 Aligned_cols=79 Identities=10% Similarity=0.019 Sum_probs=59.0
Q ss_pred EEECCCCc-EEEEeC-----------CCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-C
Q 003171 425 LTTSIDGM-IWTGGA-----------NGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-G 488 (842)
Q Consensus 425 l~~s~dg~-l~Sgs~-----------DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g 488 (842)
+++++|+. ++.+.. .++|.+||+ +++.++++..+. +.++ ++||++|+++.. ++|.+||++ +
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 67888865 655432 348999999 789999988776 5655 568999998886 999999987 7
Q ss_pred --cccccccccccCEEEEEe
Q 003171 489 --NLLGGWVAHSSPVIKMAV 506 (842)
Q Consensus 489 --~~i~~l~gH~~~V~sla~ 506 (842)
+.++++..+......++.
T Consensus 336 ~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 336 EPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp SCEEEEEETTSCSSEEEEEE
T ss_pred cceeeEEeccCCCCcEEEEe
Confidence 777776555555566553
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.26 E-value=3e-10 Score=125.07 Aligned_cols=288 Identities=10% Similarity=-0.022 Sum_probs=146.8
Q ss_pred eEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCccCCCCCcceeEEecccCCc-EEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 194 VMCMVGDEASGVVWSGHRD-G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGP-VLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 194 V~~la~dpdg~~LaSGs~D-G--tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~-V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
+.+++++|||+.|+....+ | .|.+|++.++ + ...+..+... +..++|||||+ |+.++.++.|.+||
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~--------~-~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d 108 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ--------Q-AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVD 108 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT--------E-EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCC--------c-EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEE
Confidence 5567899999998776543 3 6788898886 3 3334333333 33478999998 77888889999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe------CCCcEEEEEccCC
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA------GFLSFALWDARTR 342 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~------s~~tI~lWD~~tg 342 (842)
+.+++............. ....+.......... .. ......++++..++.. ....|.+||+.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~----~g~~l~~~~~~~~~~---~~---~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 109 LETLEEQVIYTVDEEWKG----YGTWVANSDCTKLVG---IE---ILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp TTTCCEEEEEECCTTEEE----EEEEEECTTSSEEEE---EE---EEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred CCCCCcEEEEecccccCC----CCCEEEeccCCcccc---cc---ccccccCCCCcceeeeeeccCCCcceEEEEECCCC
Confidence 977543221111110000 000000000000000 00 0000112233322221 2347899999999
Q ss_pred cEEEEeecCCceEeeeeccc-CCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecC----cccc
Q 003171 343 ELLKVFNIDGQIENRVDMSL-LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG----GFGD 417 (842)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g----~~~~ 417 (842)
+.......... ...+.+++ ... ++........... ...++.+...+ .+..
T Consensus 179 ~~~~~~~~~~~-~~~~~~sp~dg~-------~l~~~~~~~~~~~-----------------~~~l~~~d~~~~~~~~l~~ 233 (396)
T 3c5m_A 179 ELEVIHQDTAW-LGHPIYRPFDDS-------TVGFCHEGPHDLV-----------------DARMWLVNEDGSNVRKIKE 233 (396)
T ss_dssp CEEEEEEESSC-EEEEEEETTEEE-------EEEEEECSCSSSC-----------------SCCCEEEETTSCCCEESSC
T ss_pred cEEeeccCCcc-cccceECCCCCC-------EEEEEecCCCCCC-----------------CceEEEEECCCCceeEeec
Confidence 87655432221 12222222 110 1111111000000 00122222111 1112
Q ss_pred C--CCceEEEEECCCCc-EEEEeCC-----CeEEEEcC-CCCeeeeeecCCccEEEEEe-cCCEEEEEe-----------
Q 003171 418 D--NRRTEALTTSIDGM-IWTGGAN-----GLLLQWDP-NGNRLQDFQYLPFAVQCLCT-FGSQIWVGY----------- 476 (842)
Q Consensus 418 ~--~~~v~al~~s~dg~-l~Sgs~D-----gtIrlWD~-~g~~l~~l~~H~~~V~sls~-dG~~LasGs----------- 476 (842)
+ ...+..++++|||+ |+.++.+ +.|.+||+ +|+........ .....+++ ||++|++++
T Consensus 234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~s~~dg~~l~~~~~~~p~~~~~~~ 312 (396)
T 3c5m_A 234 HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCSHLMSNFDGSLMVGDGCDAPVDVADAD 312 (396)
T ss_dssp CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEEEEEECSSSSEEEEEECCC--------
T ss_pred cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCCCCccCCCCceEEEecCCcceeecccc
Confidence 1 22466789999997 6666543 45999999 56543322111 11145677 999888754
Q ss_pred -----cCcEEEEEeCCCcccccccccccC-----------EE--EEEeCCCEEEEEc-CCCCeeecccc
Q 003171 477 -----MNGIVQVLDLEGNLLGGWVAHSSP-----------VI--KMAVGAGYIFTLA-NHGGIRGWNVT 526 (842)
Q Consensus 477 -----~DgtIrlWD~~g~~i~~l~gH~~~-----------V~--sla~dg~~l~S~S-~DgtIrvWd~~ 526 (842)
.+..|.+||+++..+..+..|... +. ++.+||+.|+.++ .++...+|.+.
T Consensus 313 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 313 SYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp --CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 247899999985444556666542 33 3346888887665 46677777754
No 179
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.23 E-value=5.5e-10 Score=123.61 Aligned_cols=259 Identities=10% Similarity=0.085 Sum_probs=146.4
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee----------CCCcEEEEeCCCccceeecC
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------EGGGIKIWPWEAIEKALSLK 279 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS----------~DgtIrvWd~~t~~~~l~~~ 279 (842)
.|++|.+||..++ +.+.++..+..+ .++|+|||+ |++++ .|++|.+||..+.+..-++.
T Consensus 29 ~d~~v~v~D~~t~--------~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~ 98 (361)
T 2oiz_A 29 TESRVHVYDYTNG--------KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS 98 (361)
T ss_dssp GGCEEEEEETTTC--------CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE
T ss_pred ccCeEEEEECCCC--------eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE
Confidence 4789999999887 556667777666 899999998 66654 36789999987643221111
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC---CCcEEEEEccCCcEEEE-eecCCceE
Q 003171 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKV-FNIDGQIE 355 (842)
Q Consensus 280 ~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s---~~tI~lWD~~tg~~l~~-l~~~~~~~ 355 (842)
.... + ... ......+++++++..|+.+. +++|.+||+.+++.+.. +...+...
T Consensus 99 ~~~~----------------~-~~~------g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~ 155 (361)
T 2oiz_A 99 LPPK----------------R-VQG------LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWS 155 (361)
T ss_dssp ECTT----------------B-CCB------CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEE
T ss_pred cCcc----------------c-ccc------CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcce
Confidence 0000 0 000 01123466778888887764 36899999999998877 54322210
Q ss_pred eeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEec-CCc-EE-EEeecCccccCCCceEEEEECCCCc
Q 003171 356 NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADA-VR-RVAAKGGFGDDNRRTEALTTSIDGM 432 (842)
Q Consensus 356 ~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~-~~~-v~-~v~~~g~~~~~~~~v~al~~s~dg~ 432 (842)
+.+.+.... + + +.+.+++...+... .++ +. .......+......+ .+.+++++.
T Consensus 156 --v~~~p~~~~------~--~------------~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 212 (361)
T 2oiz_A 156 --VIPQPNRPR------S--F------------MTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKD 212 (361)
T ss_dssp --EEECTTSSS------E--E------------EEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSS
T ss_pred --eEEcCCCCe------e--E------------EEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCC
Confidence 011111000 0 0 01111111111110 000 00 000000011111111 122345553
Q ss_pred -EEEEeCCCeEEEEcCCC-C--eeeeee------------cCCccEEEEEecCCEEEEEec-----------CcEEEEEe
Q 003171 433 -IWTGGANGLLLQWDPNG-N--RLQDFQ------------YLPFAVQCLCTFGSQIWVGYM-----------NGIVQVLD 485 (842)
Q Consensus 433 -l~Sgs~DgtIrlWD~~g-~--~l~~l~------------~H~~~V~sls~dG~~LasGs~-----------DgtIrlWD 485 (842)
++..+.++.|.+||..+ . .+..+. ........+.++|++++++.. +++|.+||
T Consensus 213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD 292 (361)
T 2oiz_A 213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMD 292 (361)
T ss_dssp EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEE
Confidence 66667788999999843 2 122211 111123467788898887654 35899999
Q ss_pred CC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccCC
Q 003171 486 LE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 486 ~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
++ ++.++++..|. +++|+ +||++|++++. ++|.+||..+.
T Consensus 293 ~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 293 TKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred CCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 97 67888888877 77776 58999998887 99999998764
No 180
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.23 E-value=3.4e-08 Score=103.99 Aligned_cols=265 Identities=11% Similarity=0.085 Sum_probs=161.4
Q ss_pred eeEEEEecCC-EEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCTEE-QLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~~~-~l~~~~--D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.++.|+.+.+ .+|++. ++.|.+||.. ..... +..... ...+.+++++++|.+.++..
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~------------------~~~~~~-~~~~~~i~~~~~g~l~v~~~ 75 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITE------------------YPLPTP-DAKVMCLTISSDGEVWFTEN 75 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE------------------EECSST-TCCEEEEEECTTSCEEEEET
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE------------------ecCCcc-cCceeeEEECCCCCEEEeCC
Confidence 4667777744 788865 5789999976 22110 000001 34688999999998777767
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEe-eCCCcEEEEeCCCccce-eecCCCceeeeEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSG-SEGGGIKIWPWEAIEKA-LSLKPEERHTAAL 288 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~Sg-S~DgtIrvWd~~t~~~~-l~~~~~~~~~~~l 288 (842)
.++.|..|+..+. .....+..+...+.+|+++++|+||.+ ..++.|.+||. +++.. +....
T Consensus 76 ~~~~i~~~~~~g~--------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~-------- 138 (299)
T 2z2n_A 76 AANKIGRITKKGI--------IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPN-------- 138 (299)
T ss_dssp TTTEEEEECTTSC--------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS--------
T ss_pred CCCeEEEECCCCc--------EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCC--------
Confidence 7889999997632 122222334567899999999998754 56789999997 32211 10000
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
.......++.++++ .+|.+. .+.|.+||. +++.... ..
T Consensus 139 ---------------------~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~-~~---------------- 178 (299)
T 2z2n_A 139 ---------------------KGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITEF-KI---------------- 178 (299)
T ss_dssp ---------------------TTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEE-EC----------------
T ss_pred ---------------------CCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEEe-eC----------------
Confidence 01234567776655 455543 357888887 6554211 00
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeC-CCeEEEE
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGA-NGLLLQW 445 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~-DgtIrlW 445 (842)
......+..++++++|.+|.+.. ++.|.+|
T Consensus 179 -------------------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 179 -------------------------------------------------PTPASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp -------------------------------------------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred -------------------------------------------------CCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 00011234677888899887763 6789999
Q ss_pred cCCCCeeee-eecCCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCcccc-cccccccCEEEEEe-CCCEEEEEcCCCC
Q 003171 446 DPNGNRLQD-FQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLG-GWVAHSSPVIKMAV-GAGYIFTLANHGG 519 (842)
Q Consensus 446 D~~g~~l~~-l~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~-~l~gH~~~V~sla~-dg~~l~S~S~Dgt 519 (842)
|.+++.... +..+...+.+++.+ |. ||.+. .++.|.+||.+++... .+..+...+.+++. ++...++.+ .+.
T Consensus 210 ~~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~g~l~v~~~-~~~ 287 (299)
T 2z2n_A 210 TTSGEITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGETIWFAME-CDK 287 (299)
T ss_dssp CTTCCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEECSSCEEEEET-TTE
T ss_pred CCCCcEEEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECCCCceEEEeCCCCCCccceEEecCCCEEEEec-CCc
Confidence 996654322 22345678888775 55 66665 6789999998765322 13345567887775 444444444 455
Q ss_pred eeecccc
Q 003171 520 IRGWNVT 526 (842)
Q Consensus 520 IrvWd~~ 526 (842)
|..++..
T Consensus 288 l~~~~~~ 294 (299)
T 2z2n_A 288 IGKLTLI 294 (299)
T ss_dssp EEEEEEC
T ss_pred EEEEEcC
Confidence 6655543
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.23 E-value=4.2e-09 Score=114.15 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=66.2
Q ss_pred CCCCc-EEEEeCC--------CeEEEEcCCCCeeeeeecCCccEEE-EEe-cCCEEEEEecCcEEEEEeCC-Cccccccc
Q 003171 428 SIDGM-IWTGGAN--------GLLLQWDPNGNRLQDFQYLPFAVQC-LCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 428 s~dg~-l~Sgs~D--------gtIrlWD~~g~~l~~l~~H~~~V~s-ls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (842)
+|||+ |+.++.+ ..|.+|| +++....+..|...|.+ +.. || .+++++.++.++|| +. |+. ..+.
T Consensus 223 spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~~g~~-~~~~ 298 (347)
T 2gop_A 223 DSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IWDGEI-KPIA 298 (347)
T ss_dssp EECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EESSSE-EEEE
T ss_pred CCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-EcCCce-EEEe
Confidence 56765 5555533 4688899 77665555566677775 544 66 88888999999999 76 554 3444
Q ss_pred ccccCEEEEEeCCCEEEEEcCCCCe-eecccc
Q 003171 496 AHSSPVIKMAVGAGYIFTLANHGGI-RGWNVT 526 (842)
Q Consensus 496 gH~~~V~sla~dg~~l~S~S~DgtI-rvWd~~ 526 (842)
.+.+.|.++++++..+++++.+++. ++|.+.
T Consensus 299 ~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 299 KGRHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp CSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred cCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 5677888888755666777777765 888764
No 182
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.22 E-value=8.1e-09 Score=109.04 Aligned_cols=231 Identities=7% Similarity=0.069 Sum_probs=139.3
Q ss_pred EEEecC-CEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEc-CCCCEEEEEeC-
Q 003171 137 TIVCTE-EQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGD-EASGVVWSGHR- 211 (842)
Q Consensus 137 ~l~~~~-~~l~~~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~d-pdg~~LaSGs~- 211 (842)
.|+.+. ..+|++ .++.|++||.+.. .... . +.....+ .+ ...+.+++++ ++++++++...
T Consensus 34 ~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~-----~----~~~~~~~----~~-~~~p~~i~~~~~~g~l~v~~~~~ 98 (286)
T 1q7f_A 34 GVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQ-----F----GECGKRD----SQ-LLYPNRVAVVRNSGDIIVTERSP 98 (286)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTTSC-EEEE-----E----CCBSSST----TC-BSSEEEEEEETTTTEEEEEECGG
T ss_pred eEEECCCCCEEEEECCCCEEEEECCCCc-EEEE-----e----cccCCCc----cc-ccCceEEEEEcCCCeEEEEcCCC
Confidence 455543 367764 4789999997632 1110 0 0000000 01 2357889994 56655555533
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEec-ccCCcEEEEEEecCCCEE-EeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~L~-SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
++.|++|+..+ +....+. ++...+.+|+++++|+|| +.+.++.|.+|+.+.. ....+..
T Consensus 99 ~~~i~~~d~~g---------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~--------- 159 (286)
T 1q7f_A 99 THQIQIYNQYG---------QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFGC--------- 159 (286)
T ss_dssp GCEEEEECTTS---------CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEEC---------
T ss_pred CCEEEEECCCC---------cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEEEeCC---------
Confidence 89999999543 3444443 345678999999999975 5567889999997431 1110000
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (842)
.++ ......++.++++. +|.+. +..|++||.. ++.+..+..++
T Consensus 160 --------~~~----------~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~g--------------- 204 (286)
T 1q7f_A 160 --------SKH----------LEFPNGVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGGEG--------------- 204 (286)
T ss_dssp --------TTT----------CSSEEEEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESCTT---------------
T ss_pred --------CCc----------cCCcEEEEECCCCC-EEEEECCCCEEEEEcCC-CCEEEEEccCC---------------
Confidence 000 12355677777655 55443 4689999873 44433321110
Q ss_pred cccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEe-CCC-eEEEE
Q 003171 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANG-LLLQW 445 (842)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs-~Dg-tIrlW 445 (842)
+...+..++++++|.+|.+. .++ .|++|
T Consensus 205 --------------------------------------------------~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~ 234 (286)
T 1q7f_A 205 --------------------------------------------------ITNYPIGVGINSNGEILIADNHNNFNLTIF 234 (286)
T ss_dssp --------------------------------------------------TSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred --------------------------------------------------ccCCCcEEEECCCCCEEEEeCCCCEEEEEE
Confidence 01224567889999976655 454 89999
Q ss_pred cCCCCeeeeeecCCc--cEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 446 DPNGNRLQDFQYLPF--AVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 446 D~~g~~l~~l~~H~~--~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
|.+|+.+.++..+.. .+.+++. +|+ |++++.|++|++|+..
T Consensus 235 ~~~g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs~~~~~v~v~~~~ 279 (286)
T 1q7f_A 235 TQDGQLISALESKVKHAQCFDVALMDDGS-VVLASKDYRLYIYRYV 279 (286)
T ss_dssp CTTSCEEEEEEESSCCSCEEEEEEETTTE-EEEEETTTEEEEEECS
T ss_pred CCCCCEEEEEcccCCCCcceeEEECCCCc-EEEECCCCeEEEEEcc
Confidence 999988888876543 3566654 565 4444779999999975
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.20 E-value=1.1e-08 Score=110.33 Aligned_cols=222 Identities=14% Similarity=0.125 Sum_probs=134.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEee-CC----CcEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EG----GGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~D----gtIr 265 (842)
...+.+++++++|++++++..++.|.+||..++ +.......+...|.+|+++++|+||.+. .+ +.|.
T Consensus 44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK--------EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTC--------CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred CccccCcEECCCCCEEEEECCCCEEEEEeCCCC--------cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 345688999999998889999999999999876 2222233567889999999999976554 44 5899
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--------CcEEEE
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--------LSFALW 337 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--------~tI~lW 337 (842)
+||.++......+.... ....+..++.++++. +|.+.. ..|..+
T Consensus 116 ~~d~~~~~~~~~~~~~~---------------------------~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~ 167 (333)
T 2dg1_A 116 AATENGDNLQDIIEDLS---------------------------TAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYV 167 (333)
T ss_dssp EECTTSCSCEEEECSSS---------------------------SCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEE
T ss_pred EEeCCCCEEEEEEccCc---------------------------cCCcccceEECCCCC-EEEEeccccccCCCceEEEE
Confidence 99987643210010000 012355667776654 443322 123333
Q ss_pred EccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCcccc
Q 003171 338 DARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD 417 (842)
Q Consensus 338 D~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~ 417 (842)
|..++++.... .
T Consensus 168 ~~~~~~~~~~~--------------------------------------------------------------------~ 179 (333)
T 2dg1_A 168 SPDFRTVTPII--------------------------------------------------------------------Q 179 (333)
T ss_dssp CTTSCCEEEEE--------------------------------------------------------------------E
T ss_pred eCCCCEEEEee--------------------------------------------------------------------c
Confidence 33332221100 0
Q ss_pred CCCceEEEEECCCCc-EEEE-eCCCeEEEEcC--CCCeeeee--------ecCCccEEEEEec--CCEEEEEecCcEEEE
Q 003171 418 DNRRTEALTTSIDGM-IWTG-GANGLLLQWDP--NGNRLQDF--------QYLPFAVQCLCTF--GSQIWVGYMNGIVQV 483 (842)
Q Consensus 418 ~~~~v~al~~s~dg~-l~Sg-s~DgtIrlWD~--~g~~l~~l--------~~H~~~V~sls~d--G~~LasGs~DgtIrl 483 (842)
....+..+++++||. |+.+ +.++.|.+||. +|+.+..+ .++ ..+..++.+ |...++...++.|.+
T Consensus 180 ~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~ 258 (333)
T 2dg1_A 180 NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLV 258 (333)
T ss_dssp EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEE
Confidence 001234678899986 6554 45788999998 35544322 122 356667664 654444446789999
Q ss_pred EeCCCccccccccccc------CEEEEEe--CCCEEEEEcCC
Q 003171 484 LDLEGNLLGGWVAHSS------PVIKMAV--GAGYIFTLANH 517 (842)
Q Consensus 484 WD~~g~~i~~l~gH~~------~V~sla~--dg~~l~S~S~D 517 (842)
||.+++.+..+..+.. .+.++++ |++.|+.++.+
T Consensus 259 ~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 259 FNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp ECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 9998877666654432 5777764 56666644444
No 184
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.14 E-value=2.2e-08 Score=122.28 Aligned_cols=316 Identities=14% Similarity=0.209 Sum_probs=192.4
Q ss_pred eEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCC-eEEEEEcCCCCEEEEEeCC
Q 003171 135 LRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSS-VMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 135 ~~~l~~~-~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-V~~la~dpdg~~LaSGs~D 212 (842)
+.+|..+ ...+|+++.++|.+||.++...... ..... ... |.++..+++| .||.|+.+
T Consensus 133 i~~i~~d~~g~lwi~t~~gl~~~~~~~~~~~~~------------------~~~~~-~~~~i~~i~~d~~g-~lwigt~~ 192 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTPEGLIMFDIKESKFIDD------------------SFSTA-MHKTIASTLYRQGD-QIYIGTST 192 (795)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTTEEECS------------------SSCHH-HHTCCEEEEEEETT-EEEEEESS
T ss_pred EEEEEECCCCCEEEEECCceEEEECCCCEEEec------------------cCCCC-CCcceEEEEECCCC-CEEEEECC
Confidence 5667666 5589999889999999764321100 00001 123 8889988665 67888887
Q ss_pred CcEEEEECCCCccCCCCCcceeEEe--cccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
+-+..|+..++. ...+ ..+...|.+|..+++|.||.|+.++.|.+||..+.+.. .+....
T Consensus 193 ~Gl~~~~~~~~~---------~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~-~~~~~~-------- 254 (795)
T 4a2l_A 193 DGLYTYSITQKT---------FEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIK-NYLHSP-------- 254 (795)
T ss_dssp SCEEEEETTTCC---------EEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEE-EECCCT--------
T ss_pred CCEEEEeCCCCe---------EEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEE-EeecCC--------
Confidence 567889987641 1111 22456799999999999999988777999998653211 010000
Q ss_pred eeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccccc
Q 003171 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (842)
.....++...+.+++.++ .+.+|.++..+|.+||..++++.......... ..++. .
T Consensus 255 -------------~~~~~l~~~~i~~i~~d~-~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~---~~l~~-------~ 310 (795)
T 4a2l_A 255 -------------SNPKSISSNYIRSLAMDS-QNRLWIGTFNDLNIYHEGTDSFASYSSNPVEN---GSLSQ-------R 310 (795)
T ss_dssp -------------TCTTSCSCSBEEEEEECT-TSCEEEEESSCEEEEETTTTEEEEECCCTTST---TSCSS-------S
T ss_pred -------------CCccccCCCeEEEEEEcC-CCCEEEEeCChhheEcCCCCeEEEEecCCCCC---CCCCC-------C
Confidence 000001234577787765 45789888779999999888764322111000 00000 0
Q ss_pred ceEEEEEecCCCCccceeeeEeecCcceEEecC-CcEEEEeec-Ccccc----------CCCceEEEEECCCCcEEEEeC
Q 003171 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAAK-GGFGD----------DNRRTEALTTSIDGMIWTGGA 438 (842)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~-~~v~~v~~~-g~~~~----------~~~~v~al~~s~dg~l~Sgs~ 438 (842)
.+. ++ +.+.....|+|+. .|+.++... +.+.. ....|.+++.+++|.||.|+.
T Consensus 311 ~i~--------------~i-~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~ 375 (795)
T 4a2l_A 311 SVR--------------SI-FMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTN 375 (795)
T ss_dssp CEE--------------EE-EECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEES
T ss_pred cEE--------------EE-EEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEEC
Confidence 000 01 1122345688886 577777542 22210 234688999999999999998
Q ss_pred CCeEEEEcCCCCeeeeee---------cCCccEEEEEec--CCEEEEEecCcEEEEEeCCCccccccc-----ccccCEE
Q 003171 439 NGLLLQWDPNGNRLQDFQ---------YLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGNLLGGWV-----AHSSPVI 502 (842)
Q Consensus 439 DgtIrlWD~~g~~l~~l~---------~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g~~i~~l~-----gH~~~V~ 502 (842)
++-|..||........+. .....|.++..| |..||+|+.++.|.+||.++.....+. .+...|.
T Consensus 376 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~ 455 (795)
T 4a2l_A 376 DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVY 455 (795)
T ss_dssp SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEE
T ss_pred CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeE
Confidence 867999999533333332 124679999875 444999999889999998743222221 3456899
Q ss_pred EEEeCCCEEEEEcCCCCeeeccccC
Q 003171 503 KMAVGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 503 sla~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
++..|.+..++.++.+++.+|+..+
T Consensus 456 ~i~~d~~g~lwigt~~Gl~~~~~~~ 480 (795)
T 4a2l_A 456 AILPDGEGNLWLGTLSALVRFNPEQ 480 (795)
T ss_dssp EEEECSSSCEEEEESSCEEEEETTT
T ss_pred EEEECCCCCEEEEecCceeEEeCCC
Confidence 9987654433434447788888543
No 185
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.14 E-value=7.9e-09 Score=125.23 Aligned_cols=105 Identities=11% Similarity=-0.011 Sum_probs=73.2
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC---------Cc
Q 003171 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD---------GR 214 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D---------Gt 214 (842)
+++++.|++|++||+++...... +. +.. +. .. ......+++||||+.|+.++.+ +.
T Consensus 29 ~~~~~~~~~i~~~~~~~~~~~~~-----~~---~~~----~~--~~-~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 29 EYLYKQENNILVFNAEYGNSSVF-----LE---NST----FD--EF-GHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp EEEEEETTEEEEEETTTCCEEEE-----EC---TTT----TT--TC-CSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cEEEEcCCcEEEEECCCCceEEE-----Ee---chh----hh--hh-cccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 44444499999999987543211 00 000 00 00 1122347899999999999987 45
Q ss_pred EEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcc
Q 003171 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 215 IrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~ 273 (842)
+.+||+.++ ....+.+|.+.+..++|||||+ |+.+ .|+.|.+|++.++.
T Consensus 94 ~~~~d~~~~---------~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 94 YDIYDLNKR---------QLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP 143 (740)
T ss_dssp EEEEETTTT---------EECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred EEEEECCCC---------cEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence 569999996 3455778888999999999998 7666 47899999997754
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.13 E-value=1.8e-09 Score=116.69 Aligned_cols=228 Identities=10% Similarity=0.009 Sum_probs=146.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEE-EeeCCCcEEEEeCC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWE 270 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~-SgS~DgtIrvWd~~ 270 (842)
..|.++++++++..+++.+.++.++.|. + .....+.+|...+.+++|+++|+|| +++.++.|.+||.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~ 74 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---A--------EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE 74 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C--------EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred cccceeeecCCccceeEEeecccCcccc---c--------ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCC
Confidence 4577788898888888888899999992 2 4456677777788999999999976 78889999999987
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-----CcEEEEEccCCcEE
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-----LSFALWDARTRELL 345 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-----~tI~lWD~~tg~~l 345 (842)
+++....... ....+..++.++++..+++... ..|.+||..++++.
T Consensus 75 ~~~~~~~~~~-----------------------------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~ 125 (333)
T 2dg1_A 75 TKEIKRPFVS-----------------------------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ 125 (333)
T ss_dssp TCCEEEEEEC-----------------------------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred CCcEEEEeeC-----------------------------CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE
Confidence 6432110000 0234667777776654444333 36888888766542
Q ss_pred EEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEE
Q 003171 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (842)
Q Consensus 346 ~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al 425 (842)
..+... .....+..+
T Consensus 126 ~~~~~~-----------------------------------------------------------------~~~~~~~~i 140 (333)
T 2dg1_A 126 DIIEDL-----------------------------------------------------------------STAYCIDDM 140 (333)
T ss_dssp EEECSS-----------------------------------------------------------------SSCCCEEEE
T ss_pred EEEccC-----------------------------------------------------------------ccCCcccce
Confidence 111100 011234567
Q ss_pred EECCCCcEEEEeCC-------CeEEEEcCCCCeeeeeecCCccEEEEE--ecCCEEEEEe-cCcEEEEEeCC--Cccccc
Q 003171 426 TTSIDGMIWTGGAN-------GLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLE--GNLLGG 493 (842)
Q Consensus 426 ~~s~dg~l~Sgs~D-------gtIrlWD~~g~~l~~l~~H~~~V~sls--~dG~~LasGs-~DgtIrlWD~~--g~~i~~ 493 (842)
+++++|.+|.++.. +.|..||.++..+..+..+...+..++ ++|++|+.+. .++.|.+||++ ++.+..
T Consensus 141 ~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~ 220 (333)
T 2dg1_A 141 VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP 220 (333)
T ss_dssp EECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE
T ss_pred EECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccc
Confidence 88899998877653 557777775533444433334466664 5788776654 57899999984 443321
Q ss_pred --------ccccccCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 494 --------WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 494 --------l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
+.+| ..+..++. +|...++...++.|.+|+.
T Consensus 221 ~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 221 FGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred ccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 2222 35666775 5666666666889999985
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.12 E-value=3.9e-08 Score=104.53 Aligned_cols=229 Identities=13% Similarity=0.094 Sum_probs=139.9
Q ss_pred eEEEEec--CC-EEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 135 LRTIVCT--EE-QLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 135 ~~~l~~~--~~-~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
...++.+ ++ .+|++. +++|.+||.++. . .. +. .. ...+.+++++++|+++++.+
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~-----------------~~--~~-~~~~~~l~~~~dg~l~v~~~ 87 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SP-----------------EM--HP-SHHQNGHCLNKQGHLIACSH 87 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EE-----------------EE--SS-CSSEEEEEECTTCCEEEEET
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EE-----------------EE--CC-CCCcceeeECCCCcEEEEec
Confidence 3344544 44 356654 689999998754 1 10 11 12 45688999999999888777
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEec---cc-CCcEEEEEEecCCCEEE-----eeCC-----------CcEEEEeCC
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQ---AH-RGPVLSLCISSYGDLWS-----GSEG-----------GGIKIWPWE 270 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~---gH-~~~V~slafs~dG~L~S-----gS~D-----------gtIrvWd~~ 270 (842)
.++.|.+||..++ +...... +. ...+.+++++|+|+||. |+.+ +.-+||.++
T Consensus 88 ~~~~i~~~d~~~g--------~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 88 GLRRLERQREPGG--------EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp TTTEEEEECSTTC--------CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred CCCeEEEEcCCCC--------cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence 7899999999775 2221111 11 23567899999999764 3311 112445443
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEcc-CCcE-E--
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR-TREL-L-- 345 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~-tg~~-l-- 345 (842)
......... .. ......++.++++..+++.+ ...|.+||+. +|++ .
T Consensus 160 ~~g~~~~~~-------------------~~----------~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~ 210 (296)
T 3e5z_A 160 PDGTLSAPI-------------------RD----------RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQG 210 (296)
T ss_dssp TTSCEEEEE-------------------CC----------CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEE
T ss_pred CCCCEEEee-------------------cC----------CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCC
Confidence 211100000 00 11234567777777766555 3578899876 4443 1
Q ss_pred EEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEE
Q 003171 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (842)
Q Consensus 346 ~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al 425 (842)
..+ .. ....+..+
T Consensus 211 ~~~------------------------------~~-------------------------------------~~~~p~~i 223 (296)
T 3e5z_A 211 VHF------------------------------TV-------------------------------------EPGKTDGL 223 (296)
T ss_dssp EEE------------------------------CC-------------------------------------SSSCCCSE
T ss_pred eEe------------------------------eC-------------------------------------CCCCCCeE
Confidence 111 00 00112246
Q ss_pred EECCCCcEEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe---cCCEEEEEecCcEEEEEeCCCcccc
Q 003171 426 TTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLEGNLLG 492 (842)
Q Consensus 426 ~~s~dg~l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~g~~i~ 492 (842)
+++++|.||.++ ++.|.+||.+|+.+..+..+.. +.++++ +++.||+++.++ |..++.+.+.++
T Consensus 224 ~~d~~G~l~v~~-~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~ 290 (296)
T 3e5z_A 224 RVDAGGLIWASA-GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE 290 (296)
T ss_dssp EEBTTSCEEEEE-TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCC
T ss_pred EECCCCCEEEEc-CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccccc
Confidence 788999999888 7889999999999998887777 777755 567999988764 445566544443
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.11 E-value=1.4e-08 Score=105.83 Aligned_cols=230 Identities=12% Similarity=0.014 Sum_probs=140.4
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCC
Q 003171 193 SVMCMVGDEASGVVW-SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 193 ~V~~la~dpdg~~La-SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t 271 (842)
...+++++++|++.+ +.+.++.|.+|+..+. ........+...+.+|+++++|+||.+..++.|.+||.++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~ 96 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST--------GTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGS 96 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-------------EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCc--------ccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCC
Confidence 577899999998666 4477899999997664 1111112344567899999999987655588999999865
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEee
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFN 349 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~ 349 (842)
.... .... .+ ......++.++++. +|.+. .+.|.+||..+......
T Consensus 97 ~~~~-~~~~-----------------------~~-----~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~-- 144 (270)
T 1rwi_B 97 NNQT-VLPF-----------------------DG-----LNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVL-- 144 (270)
T ss_dssp SCCE-ECCC-----------------------CS-----CSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEEC--
T ss_pred ceEe-eeec-----------------------CC-----cCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEee--
Confidence 3211 0000 00 12345677776554 55442 34566665433221000
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
. ......+..+++++
T Consensus 145 -----------------------------~------------------------------------~~~~~~p~~i~~~~ 159 (270)
T 1rwi_B 145 -----------------------------P------------------------------------FTGLNDPDGVAVDN 159 (270)
T ss_dssp -----------------------------C------------------------------------CCSCCSCCCEEECT
T ss_pred -----------------------------c------------------------------------cccCCCceeEEEeC
Confidence 0 00011233577888
Q ss_pred CCcEEEEe-CCCeEEEEcCCCCeeee-eecCCccEEEEEecCC-EEEEEe-cCcEEEEEeCCCcccccc-cccccCEEEE
Q 003171 430 DGMIWTGG-ANGLLLQWDPNGNRLQD-FQYLPFAVQCLCTFGS-QIWVGY-MNGIVQVLDLEGNLLGGW-VAHSSPVIKM 504 (842)
Q Consensus 430 dg~l~Sgs-~DgtIrlWD~~g~~l~~-l~~H~~~V~sls~dG~-~LasGs-~DgtIrlWD~~g~~i~~l-~gH~~~V~sl 504 (842)
+|++|.+. .++.|.+||..+..... ...+...+.+|+.+.. .||.+. .++.|.+||..++..... ..+...+.+|
T Consensus 160 ~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i 239 (270)
T 1rwi_B 160 SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAV 239 (270)
T ss_dssp TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEE
T ss_pred CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeE
Confidence 88887665 46789999996543332 2233356778877532 555555 578999999986543332 2344568888
Q ss_pred Ee--CCCEEEEEcCCCCeeeccccC
Q 003171 505 AV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 505 a~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+. +|+..++.+.++.|+++++..
T Consensus 240 ~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 240 AVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEEECCCG
T ss_pred EECCCCCEEEEECCCCEEEEEcCCC
Confidence 75 577777888999999998654
No 189
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=7.1e-08 Score=117.55 Aligned_cols=323 Identities=13% Similarity=0.173 Sum_probs=191.5
Q ss_pred ceeEEEEecCC-EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 133 CFLRTIVCTEE-QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 133 ~~~~~l~~~~~-~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
..+++|..+.+ .||++++++|.+||..+...... .. ....+ ..+. ...|.++..+++ +.||.|+.
T Consensus 211 ~~i~~i~~d~~g~lwigt~~Gl~~~d~~~~~~~~~--------~~--~~~~~--~~l~-~~~i~~i~~d~~-g~lWigt~ 276 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSKGLALFNANTETFTNF--------HN--NPGNI--HGAL-SSYIFSIKQLKD-NKLWIATE 276 (781)
T ss_dssp SSEEEEEECTTCCEEEEETTEEEEEETTTTEEEC-----------------------C-CCCEEEEEECTT-SEEEEEES
T ss_pred CceeEEEEcCCCCEEEEeCCcHheECCCCCcEEEE--------Ec--CCCcc--cccc-CceEEEEEECCC-CCEEEEeC
Confidence 35778887755 89999888999999864321110 00 00000 1122 567999999865 56899998
Q ss_pred CCcEEEEECCCCccCCCCCcceeEE--------e----cccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecC
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLS--------W----QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLK 279 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~--------l----~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~ 279 (842)
.+-+.+++..++. +..... . .-+...|.+|..+++|.||.|+.++.|..++..+... ...
T Consensus 277 ~~Gl~~~~~~~~~------~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~--~~~ 348 (781)
T 3v9f_A 277 LNGIMILDLQQNQ------FLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTF--HTW 348 (781)
T ss_dssp SSCEEEEETTCC---------------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSC--EEE
T ss_pred CCCeEEECCCCCe------eeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcc--eee
Confidence 5667788887641 111110 0 1134679999999999999999999999998754321 110
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeee
Q 003171 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRV 358 (842)
Q Consensus 280 ~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~ 358 (842)
.... .......+....|.+++.+. ...||.++ .++|.+||..++... .+....
T Consensus 349 ~~~~------------------~~~~~~~l~~~~v~~i~~d~-~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~------ 402 (781)
T 3v9f_A 349 SYSP------------------TQMNESSLSNKVVSSVCDDG-QGKLWIGTDGGGINVFENGKRVAI-YNKENR------ 402 (781)
T ss_dssp C----------------------CCCSSCCSSSCEEEEEECT-TSCEEEEEBSSCEEEEETTEEEEE-CC----------
T ss_pred ccCc------------------cccccCCCCCcceEEEEEcC-CCCEEEEeCCCcEEEEECCCCeEE-EccCCC------
Confidence 0000 00000011245677887764 45799988 578999998776542 111000
Q ss_pred ecccCCCcccccceEEEEEecCCCCccceeeeEe-ecCcceEEecC-CcEEEEeec-Ccccc------CCCceEEEEECC
Q 003171 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF-QRSRNAIMGAA-DAVRRVAAK-GGFGD------DNRRTEALTTSI 429 (842)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~-~~~~~~~~g~~-~~v~~v~~~-g~~~~------~~~~v~al~~s~ 429 (842)
.++. ..+ ..+. +.....|+|+. .|+.++... +.+.. ....|.++...+
T Consensus 403 ~~~~-------~~v----------------~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 459 (781)
T 3v9f_A 403 ELLS-------NSV----------------LCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK 459 (781)
T ss_dssp -CCC-------SBE----------------EEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT
T ss_pred CCCC-------cce----------------EEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC
Confidence 0000 000 0111 11235678875 577776542 33321 235688999999
Q ss_pred CCcEEEEeCCCeEEEEcCC-CCeeeeeecC-----CccEEEEEecCC-EEEEEecCcEEEEEeCCCccccccc----ccc
Q 003171 430 DGMIWTGGANGLLLQWDPN-GNRLQDFQYL-----PFAVQCLCTFGS-QIWVGYMNGIVQVLDLEGNLLGGWV----AHS 498 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~~-g~~l~~l~~H-----~~~V~sls~dG~-~LasGs~DgtIrlWD~~g~~i~~l~----gH~ 498 (842)
+|.||.|+..| |.++|.. ++........ ...|.++..|.+ .||.|+.++.|..+|.+++....+. ...
T Consensus 460 ~g~lwigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~ 538 (781)
T 3v9f_A 460 NKKIWIGTHAG-VFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCS 538 (781)
T ss_dssp TSEEEEEETTE-EEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSC
T ss_pred CCCEEEEECCc-eEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCC
Confidence 99999999855 8899984 4432222112 467999988743 7999998667888998754333222 235
Q ss_pred cCEEEEEeCCCEEEEEcCCCCe-eeccccC
Q 003171 499 SPVIKMAVGAGYIFTLANHGGI-RGWNVTS 527 (842)
Q Consensus 499 ~~V~sla~dg~~l~S~S~DgtI-rvWd~~~ 527 (842)
..|.+|..|.+..++.++.+++ ..||...
T Consensus 539 ~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~ 568 (781)
T 3v9f_A 539 NTINQIYRSSKGQMWLATGEGLVCFPSARN 568 (781)
T ss_dssp SCEEEEEECTTSCEEEEETTEEEEESCTTT
T ss_pred CeeEEEEECCCCCEEEEECCCceEEECCCC
Confidence 6799998865554555555666 8887543
No 190
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.10 E-value=1.6e-09 Score=116.53 Aligned_cols=290 Identities=12% Similarity=0.084 Sum_probs=173.6
Q ss_pred EEec-CCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003171 138 IVCT-EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRI 215 (842)
Q Consensus 138 l~~~-~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtI 215 (842)
++.+ ++.+|+++ +++|..|| .+...... ..+. ...+.+++++++| .||.|+.+ +
T Consensus 25 ~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~-~~~~~~~~~~~~g-~l~v~t~~--l 80 (330)
T 3hxj_A 25 PILAKNGTIYLGSSNKNLYAIN-TDGSVKWF-------------------FKSG-EIIECRPSIGKDG-TIYFGSDK--V 80 (330)
T ss_dssp CEECTTSCEECSSTTTTTEEEC-TTSCEEES-------------------SCGG-GEEEECCEETTTT-EECCSSCE--E
T ss_pred ceEccCCeEEEEcCCCEEEEEC-CCCcEEEE-------------------EecC-CCcccceEEecCC-cEEEecCc--E
Confidence 3453 55899976 78999999 65443211 0011 3345677777654 67777776 8
Q ss_pred EEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeecee
Q 003171 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (842)
Q Consensus 216 rlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~ 295 (842)
..+|. ++ +....+..+.....+.++. +|.||.|+.++.|..+|.. ++........
T Consensus 81 ~~~d~-~g--------~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~-------------- 135 (330)
T 3hxj_A 81 YAINP-DG--------TEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTK-------------- 135 (330)
T ss_dssp EEECC-CG--------GGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECS--------------
T ss_pred EEECC-CC--------cEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCC--------------
Confidence 88886 43 2222222222223334444 7789999999999999986 3322221110
Q ss_pred ecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEE
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (842)
...+..++.++ +..||.++. +.|..+|.. |+.+..+....... ....
T Consensus 136 ---------------~~~~~~~~~~~-~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~--------~~~~------- 183 (330)
T 3hxj_A 136 ---------------KAIYATPIVSE-DGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAIT--------SAAS------- 183 (330)
T ss_dssp ---------------SCCCSCCEECT-TSCEEEECTTSEEEEECTT-SCEEEEEECSSCCC--------SCCE-------
T ss_pred ---------------CceeeeeEEcC-CCEEEEEcCCCEEEEECCC-CCEeEEEecCCCce--------eeeE-------
Confidence 00111223333 445777764 789999998 77765554221110 0000
Q ss_pred EEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCcc----ccCCCceEEEEECCCCcEEEEeCCCeEEEEcCCCC
Q 003171 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF----GDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGN 450 (842)
Q Consensus 375 ~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~----~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~~g~ 450 (842)
.+....+++++ .++.++...|.. ......+.+++.+++|.||.++.++.|..+|.+|+
T Consensus 184 -----------------~d~~g~l~v~t-~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~ 245 (330)
T 3hxj_A 184 -----------------IGKDGTIYFGS-DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGT 245 (330)
T ss_dssp -----------------ECTTCCEEEES-SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSC
T ss_pred -----------------EcCCCEEEEEe-CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCCC
Confidence 00112345555 566655533321 11223466778888999999998888999998888
Q ss_pred eeeeeecCCccEEEEEec-CCEEEEEecCcEEEEEeCCCcccccccccccCEEEEEe-CCCEEEEEcCCCCeeecccc
Q 003171 451 RLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 451 ~l~~l~~H~~~V~sls~d-G~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~-dg~~l~S~S~DgtIrvWd~~ 526 (842)
.+..+......+.++..+ +..||.|+.+|.|..+|.+|+.+..+......+.++.. .+..++-++.+|.+++-...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 246 EKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC-
T ss_pred EeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecc
Confidence 777666544444445555 56899999999999999877766655555566777666 34567778889999876643
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.08 E-value=2.5e-08 Score=120.24 Aligned_cols=233 Identities=11% Similarity=-0.010 Sum_probs=137.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCc---
Q 003171 193 SVMCMVGDEASGVVWSGHRDG-----RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG--- 263 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DG-----tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt--- 263 (842)
.+..+++||||++||.++.++ +|++||+.++ +.......+. .+.+++|+|||+ |+.++.|+.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg--------~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA--------KELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGK 196 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT--------EEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC--------CCCcccccCc-ccceEEEEeCCCEEEEEEECCcccc
Confidence 578899999999998877654 8999999997 3332222222 267899999998 777777766
Q ss_pred -------------EEEEeCCCccce--eecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEE
Q 003171 264 -------------IKIWPWEAIEKA--LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS 328 (842)
Q Consensus 264 -------------IrvWd~~t~~~~--l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s 328 (842)
|++|++.+.... +.+.... + ......+..++++..|+.
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~-----------------~----------~~~~~~~~~SpDg~~l~~ 249 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD-----------------E----------PKWMGGAELSDDGRYVLL 249 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT-----------------C----------TTCEEEEEECTTSCEEEE
T ss_pred ccccccccCCCCEEEEEECCCCcccceEEeccCC-----------------C----------CeEEEEEEEcCCCCEEEE
Confidence 999999764321 1111100 0 011223444555554443
Q ss_pred eC------CCcEEEEEccC------Cc-EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecC
Q 003171 329 AG------FLSFALWDART------RE-LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS 395 (842)
Q Consensus 329 ~s------~~tI~lWD~~t------g~-~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~ 395 (842)
.+ ...|.+||+.+ +. ..+.+..+.
T Consensus 250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~------------------------------------------- 286 (710)
T 2xdw_A 250 SIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF------------------------------------------- 286 (710)
T ss_dssp EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-------------------------------------------
T ss_pred EEEccCCCccEEEEEECcccccccCCccceEEeeCCC-------------------------------------------
Confidence 32 23577888765 32 111111100
Q ss_pred cceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeC----CCeEEEEcCC-CC--eeeeeecCCc--cEEEE
Q 003171 396 RNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA----NGLLLQWDPN-GN--RLQDFQYLPF--AVQCL 465 (842)
Q Consensus 396 ~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~----DgtIrlWD~~-g~--~l~~l~~H~~--~V~sl 465 (842)
..+.. .++++|. |+..+. ++.|.+||+. ++ ..+++..|.. .|.++
T Consensus 287 ------------------------~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~ 341 (710)
T 2xdw_A 287 ------------------------EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (710)
T ss_dssp ------------------------SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEE
T ss_pred ------------------------CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEE
Confidence 00011 1334443 444333 2368999984 43 3466666655 56666
Q ss_pred Eec-C-CEEEEEecCcE--EEEEeC-CCcccccccccccCEEEEEe--CCCEEE-E---EcCCCCeeeccccCCC
Q 003171 466 CTF-G-SQIWVGYMNGI--VQVLDL-EGNLLGGWVAHSSPVIKMAV--GAGYIF-T---LANHGGIRGWNVTSPG 529 (842)
Q Consensus 466 s~d-G-~~LasGs~Dgt--IrlWD~-~g~~i~~l~gH~~~V~sla~--dg~~l~-S---~S~DgtIrvWd~~~~~ 529 (842)
+.. + ..+++...|+. |++||+ +|+.++.+..|.+.|.+++. +++.++ + ..+.++|.+||+.+..
T Consensus 342 ~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 342 ACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 543 4 46666667774 566787 57777778888778888774 565554 3 3356789999986643
No 192
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.06 E-value=9.5e-09 Score=111.36 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=67.3
Q ss_pred eEEEEECCCCcEEEEeCC------C---eEEEEcCCCCeeeeeecCCccEEEEEecCCEEEEEecC--------cEEEEE
Q 003171 422 TEALTTSIDGMIWTGGAN------G---LLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMN--------GIVQVL 484 (842)
Q Consensus 422 v~al~~s~dg~l~Sgs~D------g---tIrlWD~~g~~l~~l~~H~~~V~sls~dG~~LasGs~D--------gtIrlW 484 (842)
+..++++|||.+++++.+ . .|.++| +|+. +.+..+ ..+.++++||++|+.++.+ ..|.+|
T Consensus 173 ~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 173 FSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DGKE-EKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp TCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TTEE-EEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEE
T ss_pred cccccCCCCeEEEEEecccccccccccccEEEeC-CCce-EEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEE
Confidence 345677788833444433 1 355555 5543 444445 6677778999988877743 479999
Q ss_pred eCCCcccccccccccCEEE-EEe-CCCEEEEEcCCCCeeecccc
Q 003171 485 DLEGNLLGGWVAHSSPVIK-MAV-GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 485 D~~g~~i~~l~gH~~~V~s-la~-dg~~l~S~S~DgtIrvWd~~ 526 (842)
| .++......+|...|.. +.+ |+ .+++++.|+.+++| +.
T Consensus 250 d-~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 250 D-GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp C-SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EE
T ss_pred C-CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-Ec
Confidence 9 66665555677777875 665 45 77899999999999 86
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.06 E-value=2.7e-08 Score=108.29 Aligned_cols=257 Identities=11% Similarity=-0.023 Sum_probs=153.5
Q ss_pred CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCC
Q 003171 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDD 229 (842)
Q Consensus 150 D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~ 229 (842)
+++|.+||.++...... + . .+ .+..+ + ......++++ ++++.++...+++|.+||..++
T Consensus 16 ~~~l~~~d~~t~~~~~~-i---~---~~-~n~~~----l--g~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~------ 74 (328)
T 3dsm_A 16 NATLSYYDPATCEVENE-V---F---YR-ANGFK----L--GDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF------ 74 (328)
T ss_dssp CBEEEEEETTTTEEECS-H---H---HH-HHSSC----C--BSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC------
T ss_pred CceEEEEECCCCEEhhh-h---H---hh-hcCcc----c--CccceEEEEE-CCEEEEEEcCCCEEEEEECccc------
Confidence 78999999987543211 0 0 00 00000 1 2235667775 4555555666799999999987
Q ss_pred CcceeEEecccCCcEEEEEEecCCCEEEee-CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceee
Q 003171 230 GFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSS 308 (842)
Q Consensus 230 ~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~ 308 (842)
+.+.++. .......|+++++|+|+.+. .+++|.+||+.+.+.......... ...
T Consensus 75 --~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~----------------~~~------ 129 (328)
T 3dsm_A 75 --KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM----------------DME------ 129 (328)
T ss_dssp --CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC----------------CTT------
T ss_pred --EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc----------------ccc------
Confidence 5555554 34568899999999987555 899999999977532211110000 000
Q ss_pred eecCCEEEEEEcCCCCEEEEeC---CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCcc
Q 003171 309 ILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKA 385 (842)
Q Consensus 309 ~~s~~v~~las~~~~~~v~s~s---~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~ 385 (842)
......++. .+.++|.+. +++|.++|+.++++++.+.....
T Consensus 130 --~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~-------------------------------- 173 (328)
T 3dsm_A 130 --SGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ-------------------------------- 173 (328)
T ss_dssp --TCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC--------------------------------
T ss_pred --CCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC--------------------------------
Confidence 000112233 244555553 46899999999887655421000
Q ss_pred ceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCC-----------CeEEEEcC-CCCeee
Q 003171 386 QSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN-----------GLLLQWDP-NGNRLQ 453 (842)
Q Consensus 386 ~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~D-----------gtIrlWD~-~g~~l~ 453 (842)
...++++++|++|.++.. +.|.+||. +++.++
T Consensus 174 ------------------------------------p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~ 217 (328)
T 3dsm_A 174 ------------------------------------PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK 217 (328)
T ss_dssp ------------------------------------BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE
T ss_pred ------------------------------------ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE
Confidence 012456677887665542 68999999 577776
Q ss_pred eeecC-CccEEEEEe--cCCEEEEEecCcEEEEEeCC-Ccccc-c-ccccccCEEEEEeC---CCEEEEE----cCCCCe
Q 003171 454 DFQYL-PFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLG-G-WVAHSSPVIKMAVG---AGYIFTL----ANHGGI 520 (842)
Q Consensus 454 ~l~~H-~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~-~-l~gH~~~V~sla~d---g~~l~S~----S~DgtI 520 (842)
++... ......+++ +|++|+++.. +|.+||++ ++... . +..+.....+|+.+ +...++. ..+++|
T Consensus 218 ~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 218 QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp EEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred EEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 66532 234566654 5889988654 89999987 45432 2 22224567788753 3444555 578899
Q ss_pred eecccc
Q 003171 521 RGWNVT 526 (842)
Q Consensus 521 rvWd~~ 526 (842)
.+||..
T Consensus 296 ~v~d~~ 301 (328)
T 3dsm_A 296 YRYSPQ 301 (328)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 999854
No 194
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.06 E-value=2.6e-07 Score=97.08 Aligned_cols=229 Identities=12% Similarity=0.127 Sum_probs=143.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEee-CCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd~ 269 (842)
...+.+++++++|++.++...++.|.+||.. +. ........+...+.+|+++++|.+|.+. .++.|..|+.
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GK-------ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-------eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence 3478999999998866665558899999987 41 1122223455789999999999987554 4788999987
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKV 347 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~ 347 (842)
+.....+... . .......++.++++ .+|.+. .+.|.+||. +++....
T Consensus 86 ~g~~~~~~~~-------------------~----------~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~ 134 (299)
T 2z2n_A 86 KGIIKEYTLP-------------------N----------PDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREY 134 (299)
T ss_dssp TSCEEEEECS-------------------S----------TTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CCcEEEEeCC-------------------C----------cCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEe
Confidence 5211111000 0 01235567776655 455443 356888887 5543211
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
. . ......+..+++
T Consensus 135 ~-~-----------------------------------------------------------------~~~~~~~~~i~~ 148 (299)
T 2z2n_A 135 E-L-----------------------------------------------------------------PNKGSYPSFITL 148 (299)
T ss_dssp E-C-----------------------------------------------------------------SSTTCCEEEEEE
T ss_pred c-C-----------------------------------------------------------------CCCCCCCceEEE
Confidence 0 0 000122456778
Q ss_pred CCCCcEEEEeC-CCeEEEEcCCCCeeee-eecCCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCcccc-cccccccCE
Q 003171 428 SIDGMIWTGGA-NGLLLQWDPNGNRLQD-FQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLG-GWVAHSSPV 501 (842)
Q Consensus 428 s~dg~l~Sgs~-DgtIrlWD~~g~~l~~-l~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~-~l~gH~~~V 501 (842)
+++|.+|.+.. ++.|.+||.+|+.... +..+...+.+++.+ |. ||.+. .++.|.+||.+++... ....+...+
T Consensus 149 ~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~ 227 (299)
T 2z2n_A 149 GSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITTSGEITEFKIPTPNARP 227 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTCCEEEEECSSTTCCE
T ss_pred cCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECCCCcEEEEECCCCCCCc
Confidence 88999887664 5789999997665432 23344567788764 55 55554 5789999999665422 233455678
Q ss_pred EEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 502 IKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 502 ~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
.+|+. +|...++...++.|.+|+.
T Consensus 228 ~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 228 HAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEEET
T ss_pred eeEEECCCCCEEEeccCCceEEEECC
Confidence 88886 4554455557788999885
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.05 E-value=5.9e-09 Score=125.38 Aligned_cols=230 Identities=5% Similarity=-0.075 Sum_probs=136.9
Q ss_pred CeEEEEEcCCCCEEE-----EEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcE--EEEEEecCCC-EEEeeCCCc-
Q 003171 193 SVMCMVGDEASGVVW-----SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPV--LSLCISSYGD-LWSGSEGGG- 263 (842)
Q Consensus 193 ~V~~la~dpdg~~La-----SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V--~slafs~dG~-L~SgS~Dgt- 263 (842)
.+.++++||||++|| +|+.+.+|++||+.++. ... ..|-..+ .+++|+|||+ |+.++.|.+
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~--------~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~ 191 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGE--------WSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDP 191 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCC--------BCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCT
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCC--------CcC--CcccCcccccceEEecCCCEEEEEEecCCC
Confidence 688899999999999 66667799999999972 210 1122222 6789999998 788888877
Q ss_pred ------------EEEEeCCCccc--eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe
Q 003171 264 ------------IKIWPWEAIEK--ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA 329 (842)
Q Consensus 264 ------------IrvWd~~t~~~--~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~ 329 (842)
|++|++.+... .+.+.... + ...+..+..++++..|+.+
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~-----------------~----------~~~~~~~~~SpDG~~l~~~ 244 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG-----------------D----------PTTFLQSDLSRDGKYLFVY 244 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC-----------------C----------TTCEEEEEECTTSCCEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCC-----------------C----------CEEEEEEEECCCCCEEEEE
Confidence 99999977432 11111000 0 1123345556666554433
Q ss_pred C-CC----cEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCC
Q 003171 330 G-FL----SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD 404 (842)
Q Consensus 330 s-~~----tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~ 404 (842)
+ +. .|.+||..+++... +..+.
T Consensus 245 ~~~~~~~~~l~~~~~~~~~~~~-l~~~~---------------------------------------------------- 271 (695)
T 2bkl_A 245 ILRGWSENDVYWKRPGEKDFRL-LVKGV---------------------------------------------------- 271 (695)
T ss_dssp EEETTTEEEEEEECTTCSSCEE-EEECS----------------------------------------------------
T ss_pred EeCCCCceEEEEEcCCCCceEE-eecCC----------------------------------------------------
Confidence 3 22 34455444433211 11000
Q ss_pred cEEEEeecCccccCCCceEEEEECCCCcEEEEe----CCCeEEEEcC-CCCe--eeeeecC--CccEEEEEec-CCEEEE
Q 003171 405 AVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG----ANGLLLQWDP-NGNR--LQDFQYL--PFAVQCLCTF-GSQIWV 474 (842)
Q Consensus 405 ~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs----~DgtIrlWD~-~g~~--l~~l~~H--~~~V~sls~d-G~~Las 474 (842)
..+....+ ++|.++..+ .++.|.+||+ +++. .+.+..| ...|.++++. +..+++
T Consensus 272 ---------------~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~ 335 (695)
T 2bkl_A 272 ---------------GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLE 335 (695)
T ss_dssp ---------------SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEE
T ss_pred ---------------CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEE
Confidence 00111122 233343333 2578999999 4543 3455544 3457777664 457777
Q ss_pred EecCcEEEEEe--CCCccccccccc-ccCEEEEE--eCCCEEE----EEcCCCCeeeccccCC
Q 003171 475 GYMNGIVQVLD--LEGNLLGGWVAH-SSPVIKMA--VGAGYIF----TLANHGGIRGWNVTSP 528 (842)
Q Consensus 475 Gs~DgtIrlWD--~~g~~i~~l~gH-~~~V~sla--~dg~~l~----S~S~DgtIrvWd~~~~ 528 (842)
...|+..+||. ++|+.++.+..| .+.|.+++ ++++.++ |..+.++|.+||+.+.
T Consensus 336 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 336 YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 78899888885 457766666666 56676665 4677666 5556788999998654
No 196
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.05 E-value=5.2e-09 Score=124.40 Aligned_cols=236 Identities=13% Similarity=-0.048 Sum_probs=140.1
Q ss_pred CCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEE---------EEEEe--cCCC--E
Q 003171 191 VSSVMCMVGDEASGVVWSG--HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVL---------SLCIS--SYGD--L 255 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSG--s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~---------slafs--~dG~--L 255 (842)
...|..+++++++-.++++ +.|+..+||....+ .....+.+|...|. +.+++ |||+ |
T Consensus 23 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 23 SGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--------GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp CSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--------SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred CCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--------CCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence 5678999999876555666 56889999996443 34566777776666 66666 9986 3
Q ss_pred EEee-CCCcEEEEeCC--CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-
Q 003171 256 WSGS-EGGGIKIWPWE--AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF- 331 (842)
Q Consensus 256 ~SgS-~DgtIrvWd~~--t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~- 331 (842)
+.++ .+..|.+|++. +......+...... .+ ...+..++.++++..|+.++.
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~--------------~~----------~~~~~~~~~spDg~~l~~~~~~ 150 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAV--------------GG----------GLRWADPVLLPERGEVWCMAEE 150 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCS--------------TT----------CEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccC--------------CC----------CccccCcEECCCCCEEEEEEec
Confidence 4333 24555555554 10111112110000 00 112345667777777766542
Q ss_pred ----------CcEEEEEccC------CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecC
Q 003171 332 ----------LSFALWDART------RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS 395 (842)
Q Consensus 332 ----------~tI~lWD~~t------g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~ 395 (842)
.+|.+||+.+ ++.. .+.
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~---------------------------------------------- 183 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELS---------------------------------------------- 183 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESS----------------------------------------------
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCcee-EEE----------------------------------------------
Confidence 2577777765 3321 110
Q ss_pred cceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCC--------CeEEEEcCC--C---CeeeeeecCCcc
Q 003171 396 RNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGAN--------GLLLQWDPN--G---NRLQDFQYLPFA 461 (842)
Q Consensus 396 ~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~D--------gtIrlWD~~--g---~~l~~l~~H~~~ 461 (842)
..+...+..+++||||+ |+.++.+ ..|++||++ | +..+...+|...
T Consensus 184 --------------------~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~ 243 (662)
T 3azo_A 184 --------------------DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA 243 (662)
T ss_dssp --------------------CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC
T ss_pred --------------------ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce
Confidence 01111233467899997 6666644 379999995 4 333444456778
Q ss_pred EEEEE--ecCCEEEEEecCc--EEEEEeCC-CcccccccccccC--------EEEEE--eCCCEEEEEcCCCCeeecccc
Q 003171 462 VQCLC--TFGSQIWVGYMNG--IVQVLDLE-GNLLGGWVAHSSP--------VIKMA--VGAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 462 V~sls--~dG~~LasGs~Dg--tIrlWD~~-g~~i~~l~gH~~~--------V~sla--~dg~~l~S~S~DgtIrvWd~~ 526 (842)
+.++. +||+.+++++.++ .|.+||++ +++.....+|... +.+++ ++++.+++++. +++++|.+.
T Consensus 244 ~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 244 IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 88765 5899778877788 67777875 5544333333332 34455 47888889998 999999543
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.03 E-value=4.4e-08 Score=104.23 Aligned_cols=212 Identities=11% Similarity=0.048 Sum_probs=135.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccC-CcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCC
Q 003171 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKP 280 (842)
Q Consensus 202 dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~ 280 (842)
.+++|++++.|+.|.+||.++| +.+.++..|. ..+.+++++|+|+++. +.++.|..||. +++...++..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG--------~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK--------EIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT--------EEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCC--------eEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcC
Confidence 3689999999999999999887 6677777665 4789999999999655 56788999998 5543333321
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEccCCcEEEEeecCCceEeee
Q 003171 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRV 358 (842)
Q Consensus 281 ~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~ 358 (842)
... ..+..+...+++..+++... ..+..+|. +|+.+..+......
T Consensus 74 ~~~----------------------------~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~---- 120 (276)
T 3no2_A 74 PAG----------------------------CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI---- 120 (276)
T ss_dssp CTT----------------------------CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC----
T ss_pred CCC----------------------------ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC----
Confidence 100 01222334455555554332 34555564 56655544321100
Q ss_pred ecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe
Q 003171 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG 437 (842)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs 437 (842)
..+......+.+.++|. +++.+
T Consensus 121 ---------------------------------------------------------~~~~~~~~~v~~~~~G~~lv~~~ 143 (276)
T 3no2_A 121 ---------------------------------------------------------ERPHAQFRQINKNKKGNYLVPLF 143 (276)
T ss_dssp ---------------------------------------------------------SSGGGSCSCCEECTTSCEEEEET
T ss_pred ---------------------------------------------------------CcccccccCceECCCCCEEEEec
Confidence 00000011234556776 56777
Q ss_pred CCCeEEEEcCCCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Ccccccccccc------cCEEEEE--e
Q 003171 438 ANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS------SPVIKMA--V 506 (842)
Q Consensus 438 ~DgtIrlWD~~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~------~~V~sla--~ 506 (842)
.++.|..||.+|+.+-++..+. .+.++. ++|..+++++.++.|..+|.+ |+.+-.+..+. ..+.+++ .
T Consensus 144 ~~~~v~~~d~~G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~ 222 (276)
T 3no2_A 144 ATSEVREIAPNGQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ 222 (276)
T ss_dssp TTTEEEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT
T ss_pred CCCEEEEECCCCCEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC
Confidence 8999999999999988887643 334443 468888888888899999998 88766654332 2256655 4
Q ss_pred CCCEEEEE
Q 003171 507 GAGYIFTL 514 (842)
Q Consensus 507 dg~~l~S~ 514 (842)
+|..+++.
T Consensus 223 ~G~i~v~~ 230 (276)
T 3no2_A 223 NGGLYICN 230 (276)
T ss_dssp TSCEEEEE
T ss_pred CCCEEEEe
Confidence 66666655
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.02 E-value=7.9e-08 Score=102.31 Aligned_cols=231 Identities=9% Similarity=0.026 Sum_probs=141.0
Q ss_pred CCeEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCccCCCCCcceeEEec-----ccCCcEEEEEEecC-CCEEEe
Q 003171 192 SSVMCMVGDEASGVVWS-------GHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-----AHRGPVLSLCISSY-GDLWSG 258 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaS-------Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~-----gH~~~V~slafs~d-G~L~Sg 258 (842)
....+++++++|+++++ +..++.|.+|+..++ + ...+. +|...+.+++++++ |+||.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g--------~-~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~ 88 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG--------K-KTVICKPEVNGYGGIPAGCQCDRDANQLFVA 88 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC--------C-EEEEECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC--------c-EEEEEecccCCCCCCCceEEEecCCCcEEEE
Confidence 35678999999988877 688899999998775 2 22222 36678999999999 888877
Q ss_pred eCCCcEEEEeCCCccceeec-CCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-C----
Q 003171 259 SEGGGIKIWPWEAIEKALSL-KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-L---- 332 (842)
Q Consensus 259 S~DgtIrvWd~~t~~~~l~~-~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~---- 332 (842)
+.++.|.+||.+ ++.. .+ .... .+ .+...+..++.++++. +|.+.. .
T Consensus 89 ~~~~~l~~~d~~-g~~~-~~~~~~~---------------------~~---~~~~~~~~i~~d~~g~-l~v~~~~~~~~~ 141 (314)
T 1pjx_A 89 DMRLGLLVVQTD-GTFE-EIAKKDS---------------------EG---RRMQGCNDCAFDYEGN-LWITAPAGEVAP 141 (314)
T ss_dssp ETTTEEEEEETT-SCEE-ECCSBCT---------------------TS---CBCBCCCEEEECTTSC-EEEEECBCBCTT
T ss_pred ECCCCEEEEeCC-CCEE-EEEeccC---------------------CC---ccccCCcCEEECCCCC-EEEEecCccccc
Confidence 766689999986 3321 11 1000 00 0012344566666553 444331 1
Q ss_pred ------------cEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEE
Q 003171 333 ------------SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (842)
Q Consensus 333 ------------tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~ 400 (842)
.|..||.. +++....
T Consensus 142 ~~~~~~~~~~~~~l~~~~~~-g~~~~~~---------------------------------------------------- 168 (314)
T 1pjx_A 142 ADYTRSMQEKFGSIYCFTTD-GQMIQVD---------------------------------------------------- 168 (314)
T ss_dssp SCCCBTTSSSCEEEEEECTT-SCEEEEE----------------------------------------------------
T ss_pred ccccccccCCCCeEEEECCC-CCEEEec----------------------------------------------------
Confidence 12222221 1110000
Q ss_pred ecCCcEEEEeecCccccCCCceEEEEEC----CCCc-EEEE-eCCCeEEEEcCC--CC-----eeeeeecCC-ccEEEEE
Q 003171 401 GAADAVRRVAAKGGFGDDNRRTEALTTS----IDGM-IWTG-GANGLLLQWDPN--GN-----RLQDFQYLP-FAVQCLC 466 (842)
Q Consensus 401 g~~~~v~~v~~~g~~~~~~~~v~al~~s----~dg~-l~Sg-s~DgtIrlWD~~--g~-----~l~~l~~H~-~~V~sls 466 (842)
........++++ ++|. ++.+ +.++.|.+||.+ |+ ....+.++. ..+..++
T Consensus 169 ----------------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~ 232 (314)
T 1pjx_A 169 ----------------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp ----------------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred ----------------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence 000123456677 8884 6655 457889999973 43 223344443 5567776
Q ss_pred ec--CCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEE-EEcCCCCeeeccccC
Q 003171 467 TF--GSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIF-TLANHGGIRGWNVTS 527 (842)
Q Consensus 467 ~d--G~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~-S~S~DgtIrvWd~~~ 527 (842)
.+ |...++...++.|.+||.+ ++.+..+..+...+.++++ +++.|+ +...++.|..|++..
T Consensus 233 ~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 64 6554454568899999998 7777777777788999885 677454 555678899888754
No 199
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.01 E-value=6.2e-08 Score=105.40 Aligned_cols=235 Identities=12% Similarity=0.044 Sum_probs=142.8
Q ss_pred CceeEEEEecCCEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 132 GCFLRTIVCTEEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 132 ~~~~~~l~~~~~~l~~~~--D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
|...+.++.+++.+|++. ++.|.+||.++...... + .+......+++++++++.++.
T Consensus 43 g~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~-----------------i----~~~~~p~~i~~~~~g~lyv~~ 101 (328)
T 3dsm_A 43 GDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGR-----------------I----TGFTSPRYIHFLSDEKAYVTQ 101 (328)
T ss_dssp BSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEE-----------------E----ECCSSEEEEEEEETTEEEEEE
T ss_pred CccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEE-----------------c----CCCCCCcEEEEeCCCeEEEEE
Confidence 345567777888999853 57999999987543221 1 113457788998888544444
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccC-----CcEEEEEEecCCCEEEee--CCCcEEEEeCCCccceeecCCCc
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-----GPVLSLCISSYGDLWSGS--EGGGIKIWPWEAIEKALSLKPEE 282 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~-----~~V~slafs~dG~L~SgS--~DgtIrvWd~~t~~~~l~~~~~~ 282 (842)
..++.|.+||..++ +....+.... .....|++ .+++|+.+. .+++|.+||+.+++....+...
T Consensus 102 ~~~~~v~~iD~~t~--------~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g- 171 (328)
T 3dsm_A 102 IWDYRIFIINPKTY--------EITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG- 171 (328)
T ss_dssp BSCSEEEEEETTTT--------EEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-
T ss_pred CCCCeEEEEECCCC--------eEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-
Confidence 48999999999886 3443443222 14456777 556776555 4899999999775322111000
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC------------CcEEEEEccCCcEEEEeec
Q 003171 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------------LSFALWDARTRELLKVFNI 350 (842)
Q Consensus 283 ~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~------------~tI~lWD~~tg~~l~~l~~ 350 (842)
.....++.++++. +|.+.. .+|.++|..++++++.+..
T Consensus 172 -----------------------------~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~ 221 (328)
T 3dsm_A 172 -----------------------------IQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF 221 (328)
T ss_dssp -----------------------------SCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC
T ss_pred -----------------------------CCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEec
Confidence 0111234444443 443332 4688888888776543321
Q ss_pred CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC
Q 003171 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (842)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d 430 (842)
.. ......++++||
T Consensus 222 ~~------------------------------------------------------------------g~~p~~la~~~d 235 (328)
T 3dsm_A 222 KL------------------------------------------------------------------GDWPSEVQLNGT 235 (328)
T ss_dssp CT------------------------------------------------------------------TCCCEEEEECTT
T ss_pred CC------------------------------------------------------------------CCCceeEEEecC
Confidence 00 012345788887
Q ss_pred Cc-EEEEeCCCeEEEEcC-CCCeee-e-eecCCccEEEEEe--cCCEEEEEe-----cCcEEEEEeCCCccccccc
Q 003171 431 GM-IWTGGANGLLLQWDP-NGNRLQ-D-FQYLPFAVQCLCT--FGSQIWVGY-----MNGIVQVLDLEGNLLGGWV 495 (842)
Q Consensus 431 g~-l~Sgs~DgtIrlWD~-~g~~l~-~-l~~H~~~V~sls~--dG~~LasGs-----~DgtIrlWD~~g~~i~~l~ 495 (842)
+. |+.+.. +|.+||. +++... . +..+......++. ++.+|+++. .+++|.+||.+|+++.++.
T Consensus 236 ~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~ 309 (328)
T 3dsm_A 236 RDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFY 309 (328)
T ss_dssp SCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred CCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEE
Confidence 66 666543 7999999 565432 1 2222355667766 455666654 5899999999988877664
No 200
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.99 E-value=2.3e-08 Score=109.95 Aligned_cols=257 Identities=11% Similarity=-0.002 Sum_probs=133.4
Q ss_pred ceeEEecccCCcEEE-----EEEecCCC-EEEeeC-CCc--EEEEeCCCccceeecCCCceeeeEEEEeeceeeccccee
Q 003171 232 GEVLSWQAHRGPVLS-----LCISSYGD-LWSGSE-GGG--IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLS 302 (842)
Q Consensus 232 ~~~~~l~gH~~~V~s-----lafs~dG~-L~SgS~-Dgt--IrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~ 302 (842)
.+...+..|...+.. .+|||||+ |+.++. |+. |.+||+.+++.. .+... +
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-~lt~~------------------~-- 79 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT-QLTEG------------------R-- 79 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE-ECCCS------------------S--
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE-EeeeC------------------C--
Confidence 566777788777776 88999998 776666 674 777788664321 11110 0
Q ss_pred ccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeec--ccCCCcccccceEEEEEec
Q 003171 303 VNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM--SLLPDFAMEDEFKTKIVTS 379 (842)
Q Consensus 303 ~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~s~ 379 (842)
...+...+.++++..|+.++ +..|.+||+.+++....+..+........+ ++.....+ .+...
T Consensus 80 --------~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~------~~~~~ 145 (388)
T 3pe7_A 80 --------GDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLV------GIEIR 145 (388)
T ss_dssp --------CBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEE------EEEEE
T ss_pred --------CCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeec------ccccc
Confidence 00111134566777666555 468999999999987666554432211111 11111100 00000
Q ss_pred CCCCcccee-eeEeecCcceEEecC-CcEEEEee-cC---ccccCCCceEEEEECC-CCc-EEEEeCC------CeEEEE
Q 003171 380 SKKDKAQSS-FGFFQRSRNAIMGAA-DAVRRVAA-KG---GFGDDNRRTEALTTSI-DGM-IWTGGAN------GLLLQW 445 (842)
Q Consensus 380 ~~~~~~~~s-~~~~~~~~~~~~g~~-~~v~~v~~-~g---~~~~~~~~v~al~~s~-dg~-l~Sgs~D------gtIrlW 445 (842)
......... ..|. ..+.... ..++.+.. .| .+..+...+..+.++| ||+ |+.++.+ ..|.+|
T Consensus 146 ~~~~~~~~~~~~~~----~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~ 221 (388)
T 3pe7_A 146 REDWVPLTDWKKFH----EFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLI 221 (388)
T ss_dssp GGGCCCCCSHHHHH----HHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEE
T ss_pred Ccccccccccchhh----hhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEE
Confidence 000000000 0000 0000000 11222221 11 1223345577899999 987 6655543 368888
Q ss_pred cCCCCeeeeeecCCc--cEEE--EEecCCEEEEEec-C----cEEEEEeCC-Cc--ccccccccccCEE-----EEEeCC
Q 003171 446 DPNGNRLQDFQYLPF--AVQC--LCTFGSQIWVGYM-N----GIVQVLDLE-GN--LLGGWVAHSSPVI-----KMAVGA 508 (842)
Q Consensus 446 D~~g~~l~~l~~H~~--~V~s--ls~dG~~LasGs~-D----gtIrlWD~~-g~--~i~~l~gH~~~V~-----sla~dg 508 (842)
|.++..++.+..+.. .+.. +++||++|+..+. + ..|.+||++ |+ .+..+.++..... .+++||
T Consensus 222 d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg 301 (388)
T 3pe7_A 222 NEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDG 301 (388)
T ss_dssp ETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE
T ss_pred eCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCC
Confidence 887766666665552 4554 4568997765443 2 249999997 44 3444444221111 356788
Q ss_pred CEEEEE---------cCCCCeeeccccC
Q 003171 509 GYIFTL---------ANHGGIRGWNVTS 527 (842)
Q Consensus 509 ~~l~S~---------S~DgtIrvWd~~~ 527 (842)
+.|+.. +.+..|.+||+.+
T Consensus 302 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 302 SDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp CCC------------CCCCEEEEEETTT
T ss_pred CcceeEeeeccccccCCCCEEEEEeccC
Confidence 877633 5566899999765
No 201
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.97 E-value=2.4e-07 Score=96.43 Aligned_cols=226 Identities=8% Similarity=0.012 Sum_probs=135.4
Q ss_pred eEEEEecCC-EEEE-e--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 135 LRTIVCTEE-QLWA-G--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 135 ~~~l~~~~~-~l~~-~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
...|+.+.+ .||+ + .++.|.+||..+..... .+ ..+...+.+++++++|+++++..
T Consensus 26 p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~----------------~~----~~~~~~p~~i~~~~~g~l~v~~~ 85 (270)
T 1rwi_B 26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV----------------LP----FNGLYQPQGLAVDGAGTVYVTDF 85 (270)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECC-----EE----------------CC----CCSCCSCCCEEECTTCCEEEEET
T ss_pred ccceEECCCCCEEEEccCCCCcEEEecCCCcccce----------------Ee----eCCcCCcceeEECCCCCEEEEcC
Confidence 345666533 6888 5 46799999875432110 00 00123567899999988555555
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEec-ccCCcEEEEEEecCCCEE-EeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~L~-SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
++.|.+|+..+. ....+. +....+.+|+++++|+|| +.+.++.|.+|+..+.........
T Consensus 86 -~~~i~~~d~~~~---------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-------- 147 (270)
T 1rwi_B 86 -NNRVVTLAAGSN---------NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-------- 147 (270)
T ss_dssp -TTEEEEECTTCS---------CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC--------
T ss_pred -CCEEEEEeCCCc---------eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc--------
Confidence 889999998774 222232 233678999999999976 445678999997644221110000
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
+ ......++.++++. +|.+. .+.|.+||..++......
T Consensus 148 ----------------~-----~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~------------------ 187 (270)
T 1rwi_B 148 ----------------G-----LNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLP------------------ 187 (270)
T ss_dssp ----------------S-----CCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECC------------------
T ss_pred ----------------c-----CCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEeec------------------
Confidence 0 01223456666554 55443 346888887654321100
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEe-CCCeEEEE
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLLLQW 445 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs-~DgtIrlW 445 (842)
......+..++++++|.+|.+. .++.|.+|
T Consensus 188 -------------------------------------------------~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~ 218 (270)
T 1rwi_B 188 -------------------------------------------------FTDITAPWGIAVDEAGTVYVTEHNTNQVVKL 218 (270)
T ss_dssp -------------------------------------------------CSSCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred -------------------------------------------------ccCCCCceEEEECCCCCEEEEECCCCcEEEE
Confidence 0001234567888999987766 46789999
Q ss_pred cCCCCeeeeee-cCCccEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 446 DPNGNRLQDFQ-YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 446 D~~g~~l~~l~-~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
|.++.....+. .+...+.+++. +|+.+++...+++|+++++.
T Consensus 219 ~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 219 LAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp CTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred cCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 99765443332 33356778776 57766666679999999986
No 202
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.96 E-value=1.3e-06 Score=91.72 Aligned_cols=262 Identities=12% Similarity=0.118 Sum_probs=155.7
Q ss_pred eeEEEEecCC-EEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCTEE-QLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~~~-~l~~~~--D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
..+.|+.+.+ .+|++. ++.|.+||.. ..... +.... +...+.+++++++|++.++..
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~------------------~~~~~-~~~~~~~i~~~~~g~l~v~~~ 80 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE------------------FEVPT-PDAKVMCLIVSSLGDIWFTEN 80 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE------------------EECSS-TTCCEEEEEECTTSCEEEEET
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE------------------EECCC-CCCcceeEEECCCCCEEEEec
Confidence 4556776644 788864 5789999976 22110 00000 134688999999988777766
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEee-CCCcEEEEeCCCccce-eecCCCceeeeEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPWEAIEKA-LSLKPEERHTAAL 288 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd~~t~~~~-l~~~~~~~~~~~l 288 (842)
.++.|..+|.. +. .....+..+...+.+|+++++|+||.+. .++.|..++.+ ++.. +....
T Consensus 81 ~~~~v~~~d~~-g~-------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~-------- 143 (300)
T 2qc5_A 81 GANKIGKLSKK-GG-------FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN-------- 143 (300)
T ss_dssp TTTEEEEECTT-SC-------EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSS--------
T ss_pred CCCeEEEECCC-CC-------eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCC--------
Confidence 68899999987 41 2222333344678999999999987544 47889999875 2211 10000
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
.......++.++++. +|.+. ...|..+|. +++... +..
T Consensus 144 ---------------------~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~---------------- 183 (300)
T 2qc5_A 144 ---------------------KGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPL---------------- 183 (300)
T ss_dssp ---------------------TTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EEC----------------
T ss_pred ---------------------CCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeC----------------
Confidence 012345677766655 55544 346777776 444321 100
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeC-CCeEEEE
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGA-NGLLLQW 445 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~-DgtIrlW 445 (842)
......+..++++++|.+|.+.. .+.|.+|
T Consensus 184 -------------------------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 184 -------------------------------------------------PTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214 (300)
T ss_dssp -------------------------------------------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred -------------------------------------------------CCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence 00012244677888899887764 5679999
Q ss_pred cCCCCeeee-eecCCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCcccc-cccccccCEEEEEeC--CCEEEEEcCCC
Q 003171 446 DPNGNRLQD-FQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLG-GWVAHSSPVIKMAVG--AGYIFTLANHG 518 (842)
Q Consensus 446 D~~g~~l~~-l~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~-~l~gH~~~V~sla~d--g~~l~S~S~Dg 518 (842)
|.+|+.... +..+...+.+++.+ |+ ||.+. .++.|..||.+++... .+..+...+.+|+.+ |...+ ++..
T Consensus 215 ~~~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~- 291 (300)
T 2qc5_A 215 TTTGEISEYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWF-ALKC- 291 (300)
T ss_dssp CTTCCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEE-ECSS-
T ss_pred cCCCcEEEEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEE-EccC-
Confidence 997765432 23345667888765 55 66665 4689999998765432 223334557777754 44333 3333
Q ss_pred Ceeecc
Q 003171 519 GIRGWN 524 (842)
Q Consensus 519 tIrvWd 524 (842)
.|..++
T Consensus 292 ~i~~~~ 297 (300)
T 2qc5_A 292 KIGKLN 297 (300)
T ss_dssp EEEEEE
T ss_pred ceEEeC
Confidence 554444
No 203
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.86 E-value=4.7e-07 Score=99.72 Aligned_cols=315 Identities=10% Similarity=0.079 Sum_probs=168.5
Q ss_pred EecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeE-EEEEcCCCCEEEEEeCCCcEE
Q 003171 139 VCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVM-CMVGDEASGVVWSGHRDGRIM 216 (842)
Q Consensus 139 ~~~~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~-~la~dpdg~~LaSGs~DGtIr 216 (842)
+..++.+|+++ ++.|..+|.+++...... .. +... .... .. ...+. .++. +++.|+.++.|+.+.
T Consensus 50 ~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~---~~----~~~~--~~~~-~~-~~~~~~~~~~--~~~~v~v~~~~g~l~ 116 (376)
T 3q7m_A 50 ALADNVVYAADRAGLVKALNADDGKEIWSV---SL----AEKD--GWFS-KE-PALLSGGVTV--SGGHVYIGSEKAQVY 116 (376)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEE---EC----CC-----CCS-CC-CCCEEEEEEE--ETTEEEEEETTSEEE
T ss_pred EEECCEEEEEcCCCeEEEEEccCCceeeee---cC----cccc--cccc-cc-CcccccCceE--eCCEEEEEcCCCEEE
Confidence 34677888865 679999999876543210 00 0000 0000 00 11222 2333 357899999999999
Q ss_pred EEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceee
Q 003171 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (842)
Q Consensus 217 lWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~ 296 (842)
.+|..+| +.+-+...+.....+.+. .++.++.++.++.|..+|..+++............ .
T Consensus 117 a~d~~tG--------~~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~----------~ 177 (376)
T 3q7m_A 117 ALNTSDG--------TVAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL----------S 177 (376)
T ss_dssp EEETTTC--------CEEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC--------------
T ss_pred EEECCCC--------CEEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce----------e
Confidence 9999987 444333322211111222 35778999999999999998876544332111000 0
Q ss_pred cccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEE
Q 003171 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (842)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (842)
.++. .. .+.. +..|+.+. ++.+..+|..+|+.+-.+....... ........+..
T Consensus 178 ~~~~----------~~----~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~-~~~~~~~~~~~-------- 232 (376)
T 3q7m_A 178 LRGE----------SA----PTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG-STEIDRLSDVD-------- 232 (376)
T ss_dssp -CCC----------CC----CEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC------------CCC--------
T ss_pred ecCC----------CC----cEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC-CcccccccccC--------
Confidence 0000 00 1111 34566665 4679999999999876654321100 00000000000
Q ss_pred EEecCCCCccceeeeEeecCcceEEecC-CcEEEEee-cCccc--cCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCC
Q 003171 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAA-KGGFG--DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGN 450 (842)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~-~~v~~v~~-~g~~~--~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~ 450 (842)
.. ... ....++++.. ..+..+.. .|... ........++. .++.++.++.++.|..+|. +|+
T Consensus 233 ---~~--------p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 233 ---TT--------PVV--VNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV-DGNRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp ---CC--------CEE--ETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE-ETTEEEEEETTCCEEEEETTTCC
T ss_pred ---CC--------cEE--ECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE-ECCEEEEEcCCCeEEEEECCCCc
Confidence 00 000 0112233332 22333332 22111 11122333333 3678999999999999999 788
Q ss_pred eeeeeec-CCccEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEE-EEeCCCEEEEEcCCCCeeecc
Q 003171 451 RLQDFQY-LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-MAVGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 451 ~l~~l~~-H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s-la~dg~~l~S~S~DgtIrvWd 524 (842)
.+-.... ....+.+....+.+|++++.+|.|.++|.+ |+.+.........+.+ ....+..|+.++.||.|..|+
T Consensus 299 ~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 299 TLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred EEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 7655542 222333444567899999999999999986 7776555543333332 334567888899999998876
No 204
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.86 E-value=2.3e-06 Score=100.30 Aligned_cols=271 Identities=13% Similarity=0.062 Sum_probs=156.7
Q ss_pred EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003171 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (842)
Q Consensus 144 ~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~ 221 (842)
.+++ ..++.|.|+|.++...... +.....+.+++++|||++|++++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~---------------------i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTV---------------------LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE---------------------EECSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEE---------------------EeCCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 4554 3578999999976543211 1102356689999999999999999999999995
Q ss_pred --CCccCCCCCcceeEEecccCCcEEEEEEe----cCCC-EE-EeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 222 --ARLLDSDDGFGEVLSWQAHRGPVLSLCIS----SYGD-LW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 222 --~g~~~~~~~~~~~~~l~gH~~~V~slafs----~dG~-L~-SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
++ +.+.++....+ -..++|| |||+ ++ +...+++|.|+|..+.+.......
T Consensus 227 ~~t~--------~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~------------- 284 (567)
T 1qks_A 227 MKEP--------TTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST------------- 284 (567)
T ss_dssp SSSC--------CEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC-------------
T ss_pred CCCC--------cEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEec-------------
Confidence 53 44555544333 4689999 6998 55 555679999999877543211110
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEE-EeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccc
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDE 371 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~-s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~ 371 (842)
.+. ...+....+...+..+..++.+..++ +.. .+.|.++|..+.+.+++-.
T Consensus 285 ----~~~-~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~---------------------- 337 (567)
T 1qks_A 285 ----RGM-TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE---------------------- 337 (567)
T ss_dssp ----CEE-CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE----------------------
T ss_pred ----ccc-ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee----------------------
Confidence 000 00000011122344455555443322 222 2455566654433211100
Q ss_pred eEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe-CCCeEEEEcC-C
Q 003171 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP-N 448 (842)
Q Consensus 372 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs-~DgtIrlWD~-~ 448 (842)
+ ........+.++|||+ ++++. .+++|.++|+ +
T Consensus 338 ----------------------------i----------------~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 338 ----------------------------I----------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp ----------------------------E----------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred ----------------------------e----------------eccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence 0 0001123466889987 55444 5778999999 6
Q ss_pred CCeeeeeec-----CCc-cEEEEEecCCEEEEEe--cCcEEEEEeCCC--------cccccccccccC-E-EEEEeCCCE
Q 003171 449 GNRLQDFQY-----LPF-AVQCLCTFGSQIWVGY--MNGIVQVLDLEG--------NLLGGWVAHSSP-V-IKMAVGAGY 510 (842)
Q Consensus 449 g~~l~~l~~-----H~~-~V~sls~dG~~LasGs--~DgtIrlWD~~g--------~~i~~l~gH~~~-V-~sla~dg~~ 510 (842)
++.+..+.. |.. .++-+.+++..+|+.+ .+++|.|+|... +.++++.+.... + ....+++++
T Consensus 374 ~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~ 453 (567)
T 1qks_A 374 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQY 453 (567)
T ss_dssp TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSE
T ss_pred CcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCe
Confidence 776665543 543 3333456666666544 368999999752 345555543222 1 223467887
Q ss_pred EEEEcC-------CCCeeeccccCC
Q 003171 511 IFTLAN-------HGGIRGWNVTSP 528 (842)
Q Consensus 511 l~S~S~-------DgtIrvWd~~~~ 528 (842)
++.... .++|.++|+.+.
T Consensus 454 l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 454 LYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEecCCCCCcccCceEEEEECCcc
Confidence 775442 459999998764
No 205
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.84 E-value=1.2e-07 Score=114.03 Aligned_cols=105 Identities=12% Similarity=-0.042 Sum_probs=70.3
Q ss_pred ceEEEEECCCCc-EEEEeCCC----eEEEEcCCCCeeeeeecCCccEEE-EEecCCEEEEEec----CcEEEEEeCC-Cc
Q 003171 421 RTEALTTSIDGM-IWTGGANG----LLLQWDPNGNRLQDFQYLPFAVQC-LCTFGSQIWVGYM----NGIVQVLDLE-GN 489 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~Dg----tIrlWD~~g~~l~~l~~H~~~V~s-ls~dG~~LasGs~----DgtIrlWD~~-g~ 489 (842)
.+..+.+||||+ |+.++.++ .|.+||..+..++.+..+...+.. +.++|+ ++..+. ++.|.+||++ ++
T Consensus 228 ~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 228 TFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp CEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred EEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 345678899997 66666555 678887743345556665555444 456888 665554 5899999987 43
Q ss_pred c--ccccccc--ccCEEEEEe-CCCEEEEEcCCCCeeecccc
Q 003171 490 L--LGGWVAH--SSPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 490 ~--i~~l~gH--~~~V~sla~-dg~~l~S~S~DgtIrvWd~~ 526 (842)
. ...+..| ...|.++++ ++..+++...|+..++|.+.
T Consensus 307 ~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 307 RASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp GGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred ccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEe
Confidence 2 3445444 345666765 55677899999999999765
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.83 E-value=1.8e-06 Score=91.75 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=52.6
Q ss_pred eEEEEECCCCcEEEEe-CCCeEEEEcCC-CCeeeeeecCCccEEEEEe--cCCEEEEEec-CcEEEEEeCC
Q 003171 422 TEALTTSIDGMIWTGG-ANGLLLQWDPN-GNRLQDFQYLPFAVQCLCT--FGSQIWVGYM-NGIVQVLDLE 487 (842)
Q Consensus 422 v~al~~s~dg~l~Sgs-~DgtIrlWD~~-g~~l~~l~~H~~~V~sls~--dG~~LasGs~-DgtIrlWD~~ 487 (842)
+..++++++|.+|.+. .++.|.+||.+ |+.+..+..+...+.++++ +|++||+++. ++.|..|+++
T Consensus 228 p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 3457888999988765 67889999995 8888888777778888875 6887877664 6899999976
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.83 E-value=6.5e-06 Score=86.32 Aligned_cols=228 Identities=13% Similarity=0.137 Sum_probs=141.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEee-CCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd~ 269 (842)
...+.+++++++|++.++...++.|.+|+.. +. .....+..+...+.+|+++++|.||.+. .++.|.++|.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~ 90 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-------IKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK 90 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-------eEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence 3467899999998877766678999999987 42 1122333445679999999999987554 4788999987
Q ss_pred CCccce-eecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEE
Q 003171 270 EAIEKA-LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLK 346 (842)
Q Consensus 270 ~t~~~~-l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~ 346 (842)
. ++.. +.... . ......++.++++. +|.+. .+.|..+|.. ++...
T Consensus 91 ~-g~~~~~~~~~-------------------~----------~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~ 138 (300)
T 2qc5_A 91 K-GGFTEYPLPQ-------------------P----------DSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYE 138 (300)
T ss_dssp T-SCEEEEECSS-------------------T----------TCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEE
T ss_pred C-CCeEEecCCC-------------------C----------CCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEE
Confidence 5 2211 10000 0 12345666765554 55443 3467777765 44321
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
+.. ......+..++
T Consensus 139 -~~~-----------------------------------------------------------------~~~~~~~~~i~ 152 (300)
T 2qc5_A 139 -YDL-----------------------------------------------------------------PNKGSYPAFIT 152 (300)
T ss_dssp -EEC-----------------------------------------------------------------SSTTCCEEEEE
T ss_pred -ccC-----------------------------------------------------------------CCCCCCceeEE
Confidence 100 00012244677
Q ss_pred ECCCCcEEEEeC-CCeEEEEcCCCCeeee-eecCCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCcccc-cccccccC
Q 003171 427 TSIDGMIWTGGA-NGLLLQWDPNGNRLQD-FQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLG-GWVAHSSP 500 (842)
Q Consensus 427 ~s~dg~l~Sgs~-DgtIrlWD~~g~~l~~-l~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~-~l~gH~~~ 500 (842)
++++|.+|.+.. ++.|..+|.+++.... +..+...+.+++.+ | .||.+. ..+.|.+||.+++... .+..+...
T Consensus 153 ~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~ 231 (300)
T 2qc5_A 153 LGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTTGEISEYDIPTPNAR 231 (300)
T ss_dssp ECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTTCCEEEEECSSTTCC
T ss_pred ECCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcCCCcEEEEECCCCCCC
Confidence 888899887764 6789999997765432 12344567788765 5 455555 4678999999765433 23345567
Q ss_pred EEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 501 VIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 501 V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
+.+|+. +|+..++...++.|.+|+.
T Consensus 232 ~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 232 PHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred ceEEEECCCCCEEEeccCCCeEEEECC
Confidence 888886 4554455555788888874
No 208
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.80 E-value=1.8e-07 Score=100.21 Aligned_cols=256 Identities=11% Similarity=0.077 Sum_probs=152.5
Q ss_pred eeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC
Q 003171 134 FLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 134 ~~~~l~~~-~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D 212 (842)
.+.+++.+ .+.+|+++++ |..+|. ++..... . +. . .....+.++. ++.||.|+.+
T Consensus 61 ~~~~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~------------~---~~----~-~~~~~~~~~~--~~~l~v~t~~ 116 (330)
T 3hxj_A 61 IECRPSIGKDGTIYFGSDK-VYAINP-DGTEKWR------------F---DT----K-KAIVSDFTIF--EDILYVTSMD 116 (330)
T ss_dssp EEECCEETTTTEECCSSCE-EEEECC-CGGGGGG------------S---CC----------CCEEEE--TTEEEEECTT
T ss_pred cccceEEecCCcEEEecCc-EEEECC-CCcEEEE------------E---EC----C-CCcccCceEE--CCEEEEEecC
Confidence 34566665 5599998877 888885 3322211 0 00 0 0011112222 5789999999
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEee
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~ 292 (842)
+.+..+|.. + +.......+...+.++++.++|.||.|+.++.|..+|.. ++........
T Consensus 117 ~~l~~~d~~-g--------~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~----------- 175 (330)
T 3hxj_A 117 GHLYAINTD-G--------TEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTN----------- 175 (330)
T ss_dssp SEEEEECTT-S--------CEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECS-----------
T ss_pred CEEEEEcCC-C--------CEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecC-----------
Confidence 999999988 5 444444455566778888889999999999999999986 3322211100
Q ss_pred ceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccce
Q 003171 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
...+..++.+. +..||.++ +.+..+| .+++.+..+....... .....+.
T Consensus 176 ------------------~~~~~~~~~d~-~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~--------~~~~~~~-- 224 (330)
T 3hxj_A 176 ------------------DAITSAASIGK-DGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTV--------TRPAISE-- 224 (330)
T ss_dssp ------------------SCCCSCCEECT-TCCEEEES-SSEEEEC-TTSCEEEEECCSSCCC--------SCCEECT--
T ss_pred ------------------CCceeeeEEcC-CCEEEEEe-CEEEEEC-CCCcEEEEEccCCcce--------eceEECC--
Confidence 01122233333 44577777 8899999 7777654443211100 0000000
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecC-CcEEEEeecCcc----ccCCCceEEEEECCCCcEEEEeCCCeEEEEcC
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAAKGGF----GDDNRRTEALTTSIDGMIWTGGANGLLLQWDP 447 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~-~~v~~v~~~g~~----~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~ 447 (842)
...+++++. .++.++...|.. ......+.++++.++|.||.++.+|.|..+|.
T Consensus 225 ----------------------~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 225 ----------------------DGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp ----------------------TSCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred ----------------------CCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence 112344443 344444322211 11112223455677899999999988999999
Q ss_pred CCCeeeeeecCCccEEEEEe-cCCEEEEEecCcEEEEEeCC
Q 003171 448 NGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 448 ~g~~l~~l~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~ 487 (842)
+|+.+..+......+.++.. .+..||.|+.+|.+++...+
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 283 DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC-
T ss_pred CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecc
Confidence 88877777655666777776 34579999999999988764
No 209
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.79 E-value=6.5e-07 Score=107.77 Aligned_cols=93 Identities=5% Similarity=0.018 Sum_probs=65.4
Q ss_pred CEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCc----------------E
Q 003171 152 GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR----------------I 215 (842)
Q Consensus 152 ~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGt----------------I 215 (842)
.|++||+++..... ..+. ...+.+++|+|||+.|+.++.|+. |
T Consensus 152 ~i~v~d~~tg~~~~--------------------~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v 210 (710)
T 2xdw_A 152 TIKFMKVDGAKELP--------------------DVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKL 210 (710)
T ss_dssp EEEEEETTTTEEEE--------------------EEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEE
T ss_pred EEEEEECCCCCCCc--------------------cccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEE
Confidence 89999998654221 1111 123567899999999999998876 9
Q ss_pred EEEECCCCccCCCCCcceeEEe--cccCCcEEEEEEecCCC-EEEeeC-----CCcEEEEeCCC
Q 003171 216 MCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGD-LWSGSE-----GGGIKIWPWEA 271 (842)
Q Consensus 216 rlWdl~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~-L~SgS~-----DgtIrvWd~~t 271 (842)
++|++.++.. .....+ ..|...+.++.|||||+ |+.++. +..|.+||+.+
T Consensus 211 ~~~~l~t~~~------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 211 YYHVLGTDQS------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp EEEETTSCGG------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred EEEECCCCcc------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 9999988620 112333 34667789999999998 554443 67899999865
No 210
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.78 E-value=2.9e-06 Score=102.87 Aligned_cols=318 Identities=15% Similarity=0.196 Sum_probs=177.0
Q ss_pred eeEEEEecC-CEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC
Q 003171 134 FLRTIVCTE-EQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 134 ~~~~l~~~~-~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D 212 (842)
.+++|..+. +.||+|++++|.+++..+...... .. ....+ ..+. ...|.|+..|.+| .||.|+..
T Consensus 233 ~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~~~--------~~--~~~~~--~~l~-~~~i~~i~~D~~g-~lWiGT~~ 298 (758)
T 3ott_A 233 SIKSLALDGNGDLLAGTDNGLYVYHNDTTPLQHI--------IH--DSRNI--QSLT-NNIIWNIFADQEH-NIWLGTDY 298 (758)
T ss_dssp EEEEEEECTTCCEEEEETTEEEEECCTTSCCEEE--------CC--CTTCT--TSCS-CSCEEEEEECTTC-CEEEEESS
T ss_pred eEEEEEEcCCCCEEEEeCCceeEEecCCCcEEEE--------Ec--CCCCc--CcCC-cCeEEEEEEcCCC-CEEEEeCC
Confidence 466777764 489999999999998764321100 00 00001 1233 5679999999654 68999988
Q ss_pred CcEEEEECCCCccCCCCCcceeEEec-----ccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCcc-ceeecCCCceeee
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQ-----AHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE-KALSLKPEERHTA 286 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~-----gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~-~~l~~~~~~~~~~ 286 (842)
| +-+...... ++. .... .....|.+++.+++|.||.|+.+| +-.++..++. ..+.....
T Consensus 299 G-l~~~~~~~~-------~~~-~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~----- 363 (758)
T 3ott_A 299 G-ISLSRYNSA-------LQF-IPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRM----- 363 (758)
T ss_dssp S-EEEECCCC--------CEE-EEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECT-----
T ss_pred c-ccccccCCc-------eeE-EecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEecc-----
Confidence 8 433332211 111 1111 123579999999999999998664 5555554321 11111000
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
. .....++...|.+++.+. ...||.++++++..+|..++++.......... ..+...
T Consensus 364 --------------~--~~~~~l~~~~v~~i~~d~-~g~lWigt~~GL~~~~~~~~~~~~~~~~~~~~----~~~~~~-- 420 (758)
T 3ott_A 364 --------------G--DKTYPLSHNRIRHIYEDK-EQQLWIATDGSINRYDYATRQFIHYNIVDNTG----TYNTNW-- 420 (758)
T ss_dssp --------------T--CSSSCCSCSCEEEEEECT-TSCEEEEETTEEEEEETTTTEEEEEEEECCC------CBSSS--
T ss_pred --------------C--CcCCCCCCCceEEEEECC-CCCEEEEeCCcHhhcCcCCCcEEEeecCCCcC----CCCCce--
Confidence 0 000011234577777764 45799988889999999988763321111100 000000
Q ss_pred ccccceEEEEEecCCCCccceeeeEe-ecCcceEEecC-CcEEEEeec-------Cccc---------c-CCCceEEEEE
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFF-QRSRNAIMGAA-DAVRRVAAK-------GGFG---------D-DNRRTEALTT 427 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~-~~~~~~~~g~~-~~v~~v~~~-------g~~~---------~-~~~~v~al~~ 427 (842)
+ ..+. +.....|+|+. .|+.++... +.+. + ....|.++..
T Consensus 421 -----v----------------~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 479 (758)
T 3ott_A 421 -----T----------------YYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIP 479 (758)
T ss_dssp -----E----------------EEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEE
T ss_pred -----E----------------EEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEE
Confidence 0 0111 11235677775 477776532 1121 0 1235888999
Q ss_pred CCCCcEEE--EeCCCeEEEEcCCCCeeeeeec----CCccEEEEEecCC-EEEEEecCcEEEEEeCCCcccccc---ccc
Q 003171 428 SIDGMIWT--GGANGLLLQWDPNGNRLQDFQY----LPFAVQCLCTFGS-QIWVGYMNGIVQVLDLEGNLLGGW---VAH 497 (842)
Q Consensus 428 s~dg~l~S--gs~DgtIrlWD~~g~~l~~l~~----H~~~V~sls~dG~-~LasGs~DgtIrlWD~~g~~i~~l---~gH 497 (842)
+.+|.||. |+.+| |..+|.....+..+.. ....|.++..|.+ .||.|+.. .|..+|.++.....+ ...
T Consensus 480 d~~g~lWi~~~t~~G-l~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~gl~ 557 (758)
T 3ott_A 480 DNEGNVWVLLYNNKG-IDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFHG-GVMRINPKDESQQSISFGSFS 557 (758)
T ss_dssp CTTSCEEEEETTCSS-EEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEETT-EEEEECC--CCCCBCCCCC--
T ss_pred cCCCCEEEEccCCCC-cEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEecC-ceEEEecCCCceEEecccCCC
Confidence 99999997 55555 8889985444444421 1346888888754 88888864 688999864332222 122
Q ss_pred ccCEEEEEeCCCEEEEEcCCCCeeeccccC
Q 003171 498 SSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 498 ~~~V~sla~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
...|.++..+.. .++.+++++|..++..+
T Consensus 558 ~~~i~~i~~~~g-~lWi~t~~Gl~~~~~~~ 586 (758)
T 3ott_A 558 NNEILSMTCVKN-SIWVSTTNGLWIIDRKT 586 (758)
T ss_dssp -CCEEEEEEETT-EEEEEESSCEEEEETTT
T ss_pred ccceEEEEECCC-CEEEECCCCeEEEcCCC
Confidence 456888876643 44555567788887543
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.78 E-value=5.6e-07 Score=96.42 Aligned_cols=69 Identities=14% Similarity=0.061 Sum_probs=55.3
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeC-CCcEEEEeC
Q 003171 192 SSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE-GGGIKIWPW 269 (842)
Q Consensus 192 ~~V~~la~dpdg~-~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~-DgtIrvWd~ 269 (842)
......+++|+|+ ++|++..++.|..|+..+ + ...+..+.+.+.+++++++|+||.+.. ++.|.+|+.
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g---------~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG---------T-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETTS---------C-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCCC---------C-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 3566788999998 889999999999999843 2 345556677899999999999887765 478999987
Q ss_pred C
Q 003171 270 E 270 (842)
Q Consensus 270 ~ 270 (842)
+
T Consensus 115 ~ 115 (305)
T 3dr2_A 115 D 115 (305)
T ss_dssp T
T ss_pred C
Confidence 5
No 212
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.75 E-value=4.5e-07 Score=109.78 Aligned_cols=230 Identities=9% Similarity=0.012 Sum_probs=132.6
Q ss_pred CeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCc---
Q 003171 193 SVMCMVGDEASGVVWSGHRD-----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG--- 263 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~D-----GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt--- 263 (842)
.+..+++||||++|+.++.+ .+|++||++++ +. .....+...+.+++|+|| + |+.++.|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg--------~~-~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~ 233 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADG--------KP-LADELKWVKFSGLAWLGN-DALLYSRFAEPKEG 233 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTC--------CE-EEEEEEEEESCCCEESTT-SEEEEEECCCC---
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCC--------CC-CCccCCCceeccEEEECC-CEEEEEEecCcccc
Confidence 57889999999999887765 36999999997 22 222112222357899999 7 777766654
Q ss_pred -----------EEEEeCCCccc--eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC
Q 003171 264 -----------IKIWPWEAIEK--ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG 330 (842)
Q Consensus 264 -----------IrvWd~~t~~~--~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s 330 (842)
|++|++.+... .+.+.... + ...+..+..++++..|+..+
T Consensus 234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~-----------------~----------~~~~~~~~~SpDG~~l~~~~ 286 (741)
T 1yr2_A 234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPE-----------------L----------PKRGHGASVSSDGRWVVITS 286 (741)
T ss_dssp -----CCCCCEEEEEETTSCGGGCEEEECCTT-----------------C----------TTCEEEEEECTTSCEEEEEE
T ss_pred cccccCCCCCEEEEEECCCCchhCEEEeccCC-----------------C----------CeEEEEEEECCCCCEEEEEE
Confidence 88898865431 11111000 0 00123344555555444332
Q ss_pred -C-----CcEEEEEccCC--cEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEec
Q 003171 331 -F-----LSFALWDARTR--ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA 402 (842)
Q Consensus 331 -~-----~tI~lWD~~tg--~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~ 402 (842)
+ ..|.+||+.++ ++.+.+..+..
T Consensus 287 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~------------------------------------------------- 317 (741)
T 1yr2_A 287 SEGTDPVNTVHVARVTNGKIGPVTALIPDLK------------------------------------------------- 317 (741)
T ss_dssp ECTTCSCCEEEEEEEETTEECCCEEEECSSS-------------------------------------------------
T ss_pred EccCCCcceEEEEECCCCCCcccEEecCCCC-------------------------------------------------
Confidence 2 25788888765 20122211000
Q ss_pred CCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeC----CCeEEEEcCCC--Ceeeeee-cCCccEEEEEecCC-EEE
Q 003171 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA----NGLLLQWDPNG--NRLQDFQ-YLPFAVQCLCTFGS-QIW 473 (842)
Q Consensus 403 ~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~----DgtIrlWD~~g--~~l~~l~-~H~~~V~sls~dG~-~La 473 (842)
.+.... +++|. |+..+. ++.|.+||+++ ...+.+. .+...+.++++++. .++
T Consensus 318 ------------------~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~ 378 (741)
T 1yr2_A 318 ------------------AQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFA 378 (741)
T ss_dssp ------------------SCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEE
T ss_pred ------------------ceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEE
Confidence 000111 13333 554443 34599999943 3444444 44445666766554 667
Q ss_pred EEecCcEEEEEe--CCCccccccccc-ccCEEEEE--eCCCEEE----EEcCCCCeeeccccC
Q 003171 474 VGYMNGIVQVLD--LEGNLLGGWVAH-SSPVIKMA--VGAGYIF----TLANHGGIRGWNVTS 527 (842)
Q Consensus 474 sGs~DgtIrlWD--~~g~~i~~l~gH-~~~V~sla--~dg~~l~----S~S~DgtIrvWd~~~ 527 (842)
+...|+..+||. ++|+..+.+..+ .+.|..++ ++++.++ |..+.++|.+||+.+
T Consensus 379 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 379 SYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred EEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 777898877775 557766666653 56677776 4666555 445678899999765
No 213
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.75 E-value=3.4e-07 Score=100.44 Aligned_cols=107 Identities=9% Similarity=-0.080 Sum_probs=67.7
Q ss_pred CCCceEEEEECC-CCc-EEEEeCC------CeEEEEcCCCCeeeeeecCC--ccEEEE--EecCCEEEEEecC-----cE
Q 003171 418 DNRRTEALTTSI-DGM-IWTGGAN------GLLLQWDPNGNRLQDFQYLP--FAVQCL--CTFGSQIWVGYMN-----GI 480 (842)
Q Consensus 418 ~~~~v~al~~s~-dg~-l~Sgs~D------gtIrlWD~~g~~l~~l~~H~--~~V~sl--s~dG~~LasGs~D-----gt 480 (842)
+...+..+.++| ||. |+..+.+ ..|.+||+.+...+.+..+. ..+..+ ++||++|+.++.+ +.
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (396)
T 3c5m_A 186 DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV 265 (396)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE
T ss_pred CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccce
Confidence 344567788999 676 6665543 35888898665555554432 245544 5689987776654 56
Q ss_pred EEEEeCC-Ccc--cccccccccCEEEEEe-CCCEEEEEc----------------CCCCeeeccccC
Q 003171 481 VQVLDLE-GNL--LGGWVAHSSPVIKMAV-GAGYIFTLA----------------NHGGIRGWNVTS 527 (842)
Q Consensus 481 IrlWD~~-g~~--i~~l~gH~~~V~sla~-dg~~l~S~S----------------~DgtIrvWd~~~ 527 (842)
|++||++ ++. +..+.++. ....+ ||+.++.++ .+..|.+||+..
T Consensus 266 l~~~d~~~g~~~~l~~~~~~~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 266 IYKANPETLENEEVMVMPPCS---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp EEEECTTTCCEEEEEECCSEE---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred EEEEECCCCCeEEeeeCCCCC---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 9999987 443 22233332 34456 899888654 246788888654
No 214
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.75 E-value=4.4e-07 Score=96.42 Aligned_cols=181 Identities=12% Similarity=0.035 Sum_probs=117.7
Q ss_pred cCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC
Q 003171 251 SYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG 330 (842)
Q Consensus 251 ~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s 330 (842)
|+..|++++.|+.|.+||.++++...++..+.. ..+..++..+++..++ +.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~----------------------------~~~~~~~~~pdG~ilv-s~ 54 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG----------------------------WECNSVAATKAGEILF-SY 54 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT----------------------------CCCCEEEECTTSCEEE-EC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc----------------------------CCCcCeEECCCCCEEE-eC
Confidence 444478999999999999977765444322110 1233455566666665 44
Q ss_pred CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEe
Q 003171 331 FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (842)
Q Consensus 331 ~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~ 410 (842)
+.+|..||. +|+.+..+..+..
T Consensus 55 ~~~V~~~d~-~G~~~W~~~~~~~--------------------------------------------------------- 76 (276)
T 3no2_A 55 SKGAKMITR-DGRELWNIAAPAG--------------------------------------------------------- 76 (276)
T ss_dssp BSEEEEECT-TSCEEEEEECCTT---------------------------------------------------------
T ss_pred CCCEEEECC-CCCEEEEEcCCCC---------------------------------------------------------
Confidence 568999998 7877655432100
Q ss_pred ecCccccCCCceEEEEECCCCc-EEEEeC-CCeEEEEcCCCCeeeeeec------CCccEE--EEEecCCEEEEEecCcE
Q 003171 411 AKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLLLQWDPNGNRLQDFQY------LPFAVQ--CLCTFGSQIWVGYMNGI 480 (842)
Q Consensus 411 ~~g~~~~~~~~v~al~~s~dg~-l~Sgs~-DgtIrlWD~~g~~l~~l~~------H~~~V~--sls~dG~~LasGs~Dgt 480 (842)
..+.++.+.+||. +++.+. ++.|..+|.+|+.+.++.. +..... ++.++|.+|++.+.++.
T Consensus 77 ---------~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~ 147 (276)
T 3no2_A 77 ---------CEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE 147 (276)
T ss_dssp ---------CEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE
T ss_pred ---------ccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE
Confidence 0122344567777 455555 6677777888887776652 111222 33458999999999999
Q ss_pred EEEEeCCCcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccCC
Q 003171 481 VQVLDLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 481 IrlWD~~g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
|.+||.+|+.+-++..+.. +.++. +++..+++++.++.|..+|..+.
T Consensus 148 v~~~d~~G~~~w~~~~~~~-~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 148 VREIAPNGQLLNSVKLSGT-PFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp EEEECTTSCEEEEEECSSC-CCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred EEEECCCCCEEEEEECCCC-ccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 9999999998777766533 33433 47888888888888888886543
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.74 E-value=2.8e-06 Score=90.68 Aligned_cols=215 Identities=14% Similarity=0.178 Sum_probs=126.8
Q ss_pred eEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCc
Q 003171 194 VMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAI 272 (842)
Q Consensus 194 V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~ 272 (842)
.-+.+++|+ +.++|+...++.|..||..++ . ...+ .+...+.+++++++|+||.+. ++.|.+||.+++
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~--------~-~~~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTK--------Q-VQRV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQ 83 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTC--------C-EEEE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTT
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCC--------c-EEEE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCC
Confidence 345678884 678888889999999999885 2 2222 245689999999999988776 568999998764
Q ss_pred cceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCC-----------cEEEEEccC
Q 003171 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-----------SFALWDART 341 (842)
Q Consensus 273 ~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~-----------tI~lWD~~t 341 (842)
+......... +. +......++.++++. +|.++.. .-.||.+.
T Consensus 84 ~~~~~~~~~~----------------------~~---~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d- 136 (297)
T 3g4e_A 84 SAVVLATVDN----------------------DK---KNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLF- 136 (297)
T ss_dssp EEEEEEECCT----------------------TC---SSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEEC-
T ss_pred cEEEEEecCC----------------------CC---CCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEE-
Confidence 3211000000 00 011234566666554 5543210 01111110
Q ss_pred CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCc
Q 003171 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (842)
Q Consensus 342 g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~ 421 (842)
.. . .+..+. .....
T Consensus 137 -------------------------------------~~--g---------------------~~~~~~------~~~~~ 150 (297)
T 3g4e_A 137 -------------------------------------PD--H---------------------HVKKYF------DQVDI 150 (297)
T ss_dssp -------------------------------------TT--S---------------------CEEEEE------EEESB
T ss_pred -------------------------------------CC--C---------------------CEEEEe------ecccc
Confidence 00 0 000000 01122
Q ss_pred eEEEEECCCCc-E-EEEeCCCeEEEEcC---CCCe-----eeeeecCCccEEEEEec--CCEEEEEe-cCcEEEEEeCC-
Q 003171 422 TEALTTSIDGM-I-WTGGANGLLLQWDP---NGNR-----LQDFQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLE- 487 (842)
Q Consensus 422 v~al~~s~dg~-l-~Sgs~DgtIrlWD~---~g~~-----l~~l~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~- 487 (842)
...++++|||+ | ++.+.++.|.+||. +|.. +..+..+......++.| |. ||++. .++.|.+||.+
T Consensus 151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTT
T ss_pred ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCC
Confidence 34688999986 5 45556788999985 3432 22233334456677664 64 55554 57889999997
Q ss_pred CcccccccccccCEEEEEeC---CCEEEE
Q 003171 488 GNLLGGWVAHSSPVIKMAVG---AGYIFT 513 (842)
Q Consensus 488 g~~i~~l~gH~~~V~sla~d---g~~l~S 513 (842)
|+++..+..+...++++++. ++.|+-
T Consensus 230 G~~~~~i~~p~~~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 230 GKRLQTVKLPVDKTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp CCEEEEEECSSSBEEEEEEESGGGCEEEE
T ss_pred ceEEEEEECCCCCceEEEEeCCCCCEEEE
Confidence 89888888887889998864 355543
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.70 E-value=2.8e-06 Score=95.55 Aligned_cols=236 Identities=13% Similarity=0.096 Sum_probs=138.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCC--cEEEEe
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG--GIKIWP 268 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dg--tIrvWd 268 (842)
.....|+++++|+++++...++.|++||++++ .+..+.+...... ++|+++|+ |+.+..++ .|.+|+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g---------~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN---------KVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT---------EEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC---------EEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEE
Confidence 36788999999998888888899999999875 2333322222333 99999997 67777655 677777
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
..+......+ .. +... .......++.++.+..|+.+. .+.|..||..++.. ..
T Consensus 201 ~~~~~~~~~~-------g~---------~~~~---------~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~ 254 (409)
T 3hrp_A 201 KASGWAPTRI-------GQ---------LGST---------FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TL 254 (409)
T ss_dssp GGGTTCEEEE-------EE---------CCTT---------SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EE
T ss_pred cCCCceeEEe-------ee---------ccch---------hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EE
Confidence 6542211000 00 0000 011233456666455555543 35688999887653 22
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
+..... ... . . ......+++
T Consensus 255 ~~~~~~------------------------~g~----------------------------------~-~-~~P~~~ia~ 274 (409)
T 3hrp_A 255 IKQLEL------------------------SGS----------------------------------L-G-TNPGPYLIY 274 (409)
T ss_dssp EEECCC------------------------CSC----------------------------------C-C-CSSCCEEEE
T ss_pred Eecccc------------------------cCC----------------------------------C-C-CCccccEEE
Confidence 211000 000 0 0 000015678
Q ss_pred CC-CCcEEEE-eCCCeEEEEcCCCCeeeeeecCC---------------ccEEEEEe--cCCEEEEEe-cCcEEEEEeCC
Q 003171 428 SI-DGMIWTG-GANGLLLQWDPNGNRLQDFQYLP---------------FAVQCLCT--FGSQIWVGY-MNGIVQVLDLE 487 (842)
Q Consensus 428 s~-dg~l~Sg-s~DgtIrlWD~~g~~l~~l~~H~---------------~~V~sls~--dG~~LasGs-~DgtIrlWD~~ 487 (842)
+| ++.|+.+ ..++.|+.||.+|+ +.++.++. .....++. +|...++-+ .++.|++||+.
T Consensus 275 ~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 275 YFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred eCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 88 5776544 45788999998876 44444442 33566665 577555555 68899999954
Q ss_pred -Cccccccccc---------------ccCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 488 -GNLLGGWVAH---------------SSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 488 -g~~i~~l~gH---------------~~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
|+ +.++.++ -.....|+. ++..+++-..++.||.+.+
T Consensus 354 ~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 354 DGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 54 4444444 245777775 4556667777778887654
No 217
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.67 E-value=1.9e-05 Score=95.77 Aligned_cols=317 Identities=15% Similarity=0.235 Sum_probs=182.5
Q ss_pred eeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC
Q 003171 134 FLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 134 ~~~~l~~~-~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D 212 (842)
.+.+|..+ ...||++++++|..+|..+...... . .+....+. ...|.++..+++++.||.|+..
T Consensus 147 ~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~------------~--~~~~~~~~-~~~i~~i~~d~~~~~lWigt~~ 211 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGI------------P--LPVHSSQS-NLFVNSLLEDTTRQCVWIGTEG 211 (758)
T ss_dssp CEEEEEECTTCCEEEEETTEEEEEETTTTEEEEE------------C--CCCCTTCS-SCCEEEEEEETTTTEEEEEEEE
T ss_pred eEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEe------------c--CCCccccc-cceeEEEEEECCCCEEEEEECC
Confidence 57778777 4599999988999999754321100 0 00000011 3358999999888889999864
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEee
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~ 292 (842)
-+..++..++. +.....+ ....|.+|+..++|.||.|+. +.+.+++..+.... .+...
T Consensus 212 -Gl~~~~~~~~~------~~~~~~l--~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~~-~~~~~----------- 269 (758)
T 3ott_A 212 -YLFQYFPSTGQ------IKQTEAF--HNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPLQ-HIIHD----------- 269 (758)
T ss_dssp -EEEEEETTTTE------EEEEEEE--EEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCCE-EECCC-----------
T ss_pred -CCeEEcCCCCe------EEeccCC--CCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcEE-EEEcC-----------
Confidence 46677876641 1111112 234699999999999999985 56778887543211 00000
Q ss_pred ceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccce
Q 003171 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
......++...|.++..+. ...||.|++.++.+... +... +.+... .... ......+
T Consensus 270 ----------~~~~~~l~~~~i~~i~~D~-~g~lWiGT~~Gl~~~~~-~~~~-~~~~~~-------~~~~---~~~~~~v 326 (758)
T 3ott_A 270 ----------SRNIQSLTNNIIWNIFADQ-EHNIWLGTDYGISLSRY-NSAL-QFIPIS-------QITG---TGDGNQF 326 (758)
T ss_dssp ----------TTCTTSCSCSCEEEEEECT-TCCEEEEESSSEEEECC-CC-C-EEEEHH-------HHSC---SCCCCBE
T ss_pred ----------CCCcCcCCcCeEEEEEEcC-CCCEEEEeCCccccccc-CCce-eEEecc-------cCCC---CCCCceE
Confidence 0000112345677887764 45799988766655432 2111 111100 0000 0000000
Q ss_pred EEEEEecCCCCccceeeeE-eecCcceEEecCCcEEEEeec-C---cc---c-------cCCCceEEEEECCCCcEEEEe
Q 003171 373 KTKIVTSSKKDKAQSSFGF-FQRSRNAIMGAADAVRRVAAK-G---GF---G-------DDNRRTEALTTSIDGMIWTGG 437 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~-~~~~~~~~~g~~~~v~~v~~~-g---~~---~-------~~~~~v~al~~s~dg~l~Sgs 437 (842)
..+ .+.....|+|+..|+.++... + .+ . -....|.++..+.+|.||.|+
T Consensus 327 ----------------~~i~~D~~g~lWiGt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt 390 (758)
T 3ott_A 327 ----------------YSLFRDSKGFYWFGGANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT 390 (758)
T ss_dssp ----------------EEEEECTTCCEEEEETTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE
T ss_pred ----------------EEEEEcCCCCEEEeeCCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe
Confidence 011 122346688887787777532 1 11 0 012458889999999999999
Q ss_pred CCCeEEEEcCCCCeeeeeec-------CCccEEEEEecC-CEEEEEecCcEEEEEeCCC------c-cc--cccc----c
Q 003171 438 ANGLLLQWDPNGNRLQDFQY-------LPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEG------N-LL--GGWV----A 496 (842)
Q Consensus 438 ~DgtIrlWD~~g~~l~~l~~-------H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g------~-~i--~~l~----g 496 (842)
.+ -|.++|........+.. ....|.++..|. ..||.|+..+.|.++|.+. + .. ..+. .
T Consensus 391 ~~-GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 469 (758)
T 3ott_A 391 DG-SINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL 469 (758)
T ss_dssp TT-EEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTC
T ss_pred CC-cHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccc
Confidence 54 59999985433333321 235689998875 4899999888899998542 1 11 1111 1
Q ss_pred cccCEEEEEeCCCEEEEE--cCCCCeeeccccC
Q 003171 497 HSSPVIKMAVGAGYIFTL--ANHGGIRGWNVTS 527 (842)
Q Consensus 497 H~~~V~sla~dg~~l~S~--S~DgtIrvWd~~~ 527 (842)
....|.+|..|.+..++. ++.++|..+|..+
T Consensus 470 ~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~ 502 (758)
T 3ott_A 470 SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRT 502 (758)
T ss_dssp SCSCEEEEEECTTSCEEEEETTCSSEEEEETTT
T ss_pred ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCC
Confidence 234599998876554554 7778888888543
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.65 E-value=9.5e-06 Score=87.91 Aligned_cols=215 Identities=14% Similarity=0.090 Sum_probs=125.3
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCcc
Q 003171 195 MCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 195 ~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~ 273 (842)
.+.+++|+ +.++|++..++.|.+|+..++ ....+. +...|.+++++++|++|.++.+ .|.+||..+++
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~---------~~~~~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~ 120 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASG---------RKTVHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGV 120 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTT---------EEEEEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCC
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCC---------cEEEEE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCc
Confidence 45678886 567888888999999999875 223332 3467999999999998777655 49999986643
Q ss_pred ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC------CcEEEEEccCCcEEEE
Q 003171 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------LSFALWDARTRELLKV 347 (842)
Q Consensus 274 ~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~------~tI~lWD~~tg~~l~~ 347 (842)
......... + .....+..++.++++. +|.++. ....||.+.++++...
T Consensus 121 ~~~~~~~~~----------------------~---~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~~g~~~~~ 174 (326)
T 2ghs_A 121 LTLHAELES----------------------D---LPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGKVTKL 174 (326)
T ss_dssp EEEEECSST----------------------T---CTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTEEEEE
T ss_pred EEEEeeCCC----------------------C---CCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEeCCcEEEe
Confidence 211000000 0 0011244566666554 454331 0112222112221000
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
. ........+++
T Consensus 175 ~--------------------------------------------------------------------~~~~~~~~i~~ 186 (326)
T 2ghs_A 175 F--------------------------------------------------------------------ADISIPNSICF 186 (326)
T ss_dssp E--------------------------------------------------------------------EEESSEEEEEE
T ss_pred e--------------------------------------------------------------------CCCcccCCeEE
Confidence 0 00012345778
Q ss_pred CCCCc-EEEE-eCCCeEEEEcCC---C-Ce-----eeeeecCCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCccccc
Q 003171 428 SIDGM-IWTG-GANGLLLQWDPN---G-NR-----LQDFQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGG 493 (842)
Q Consensus 428 s~dg~-l~Sg-s~DgtIrlWD~~---g-~~-----l~~l~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~ 493 (842)
++||+ ++.+ +.++.|.+||.. | +. +..+..+......++.| |. ||++. .++.|.+||.+|+.+..
T Consensus 187 s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g~~~~~ 265 (326)
T 2ghs_A 187 SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGNHIAR 265 (326)
T ss_dssp CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCCEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCCCEEEE
Confidence 89986 5444 456789999973 5 32 22222233455667664 54 55554 46899999998888787
Q ss_pred ccccccCEEEEEe---CCCEEEEEc
Q 003171 494 WVAHSSPVIKMAV---GAGYIFTLA 515 (842)
Q Consensus 494 l~gH~~~V~sla~---dg~~l~S~S 515 (842)
+..+...+.++++ +++.|+.++
T Consensus 266 i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 266 YEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EECSCSBEEEEEEESTTSCEEEEEE
T ss_pred EECCCCCcEEEEEecCCCCEEEEEe
Confidence 8777778988885 345554333
No 219
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.63 E-value=8e-06 Score=90.70 Aligned_cols=277 Identities=9% Similarity=-0.006 Sum_probs=156.0
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee----------C
Q 003171 197 MVGDEASGVVWSGHR-----DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------E 260 (842)
Q Consensus 197 la~dpdg~~LaSGs~-----DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS----------~ 260 (842)
....|+++.++.... +++|.+.|..++ +.+.++..-..+ . |++||||+ |+.++ .
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~--------~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG--------RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGER 107 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT--------EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCC--------eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCC
Confidence 345689999998876 679999999886 555555443445 3 99999998 66554 4
Q ss_pred CCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC---CCcEEEE
Q 003171 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALW 337 (842)
Q Consensus 261 DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s---~~tI~lW 337 (842)
+++|.+||..+.+..-++..... ..... -..-..+++++++.++|.+. +++|.++
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g---------------~r~~~-------g~~P~~~a~spDGk~lyVan~~~~~~VsVI 165 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDA---------------PRFLV-------GTYPWMTSLTPDGKTLLFYQFSPAPAVGVV 165 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTC---------------CCCCB-------SCCGGGEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCEEEEEECCCCeEEEEEECCCc---------------ccccc-------CCCCceEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 68899999987542211100000 00000 00122366778888888764 3689999
Q ss_pred EccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCC-c-EEEEeecCcc
Q 003171 338 DARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-A-VRRVAAKGGF 415 (842)
Q Consensus 338 D~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~-v~~v~~~g~~ 415 (842)
|+.+++.+.++...+... ..+.... + -+...+++..+++.... + +.... ...+
T Consensus 166 D~~t~~vv~tI~v~g~~~----~~P~g~~------~--------------~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~ 220 (386)
T 3sjl_D 166 DLEGKAFKRMLDVPDCYH----IFPTAPD------T--------------FFMHCRDGSLAKVAFGTEGTPEITH-TEVF 220 (386)
T ss_dssp ETTTTEEEEEEECCSEEE----EEEEETT------E--------------EEEEETTSCEEEEECCSSSCCEEEE-CCCC
T ss_pred ECCCCcEEEEEECCCcce----eecCCCc------e--------------eEEECCCCCEEEEECCCCCeEEEee-ccee
Confidence 999999988875433210 0000000 0 00111122222222211 1 11000 0011
Q ss_pred ccCCCce-EEEEE-CCCCcEEEEeCCCeEEEEcCCCC---eeeeee------------cCCccEEEEEecCCEEEEEec-
Q 003171 416 GDDNRRT-EALTT-SIDGMIWTGGANGLLLQWDPNGN---RLQDFQ------------YLPFAVQCLCTFGSQIWVGYM- 477 (842)
Q Consensus 416 ~~~~~~v-~al~~-s~dg~l~Sgs~DgtIrlWD~~g~---~l~~l~------------~H~~~V~sls~dG~~LasGs~- 477 (842)
.-....+ ...++ .++|+++-.+.+|+|.+.|..+. .+..+. ........+.+++++|+....
T Consensus 221 ~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 221 HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred ccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence 0011111 11233 57888655777899999999543 333332 112234456678888887653
Q ss_pred ---------CcEEEEEeCC-CcccccccccccCEEEEE--eCCC-EEEE-EcCCCCeeeccccCCCCC
Q 003171 478 ---------NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAG-YIFT-LANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 478 ---------DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~-~l~S-~S~DgtIrvWd~~~~~~~ 531 (842)
..+|-+.|++ ++.++.+..- ..+++|+ +|++ .|++ ...+++|.++|..+...+
T Consensus 301 ~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 301 RDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp CCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred ccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 3579999997 6666665432 2566666 5776 6665 456999999998765443
No 220
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=98.61 E-value=3e-07 Score=94.90 Aligned_cols=131 Identities=18% Similarity=0.220 Sum_probs=80.0
Q ss_pred eEEEEEEEeCCCCCCc-----ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhc
Q 003171 553 KILAGTWNVGQGRASQ-----DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKIL 627 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~-----~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l 627 (842)
.+-+.|||+.+..... +.+.++|.. .+||| |+|||+... ..+.|.+.+
T Consensus 9 ~l~v~swNi~g~~~~~~~~r~~~i~~~i~~--~~pDI--i~LQEv~~~-----------------------~~~~l~~~~ 61 (256)
T 4gz1_A 9 TISFITWNIDGLDGCNLPERARGVCSCLAL--YSPDV--VFLQEVIPP-----------------------YCAYLKKRA 61 (256)
T ss_dssp EEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECHH-----------------------HHHHHHHHC
T ss_pred cEEEEEEEcCCCcCcCHHHHHHHHHHHHHH--cCCCE--EEEEcCCHH-----------------------HHHHHHhhc
Confidence 4789999998654321 346666663 45775 789997421 123444444
Q ss_pred cCCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcchHHH
Q 003171 628 DDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR 707 (842)
Q Consensus 628 ~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~ 707 (842)
. .|...... -.+-...++.++..... +.... ....+....++.+.+.+.+.+..+.++|+||.+.....+.
T Consensus 62 ~---~~~~~~~~-~~~~~~~~l~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~ 132 (256)
T 4gz1_A 62 A---SYTIITGN-EEGYFTAILLKKGRVKF---KSQEI--IPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAE 132 (256)
T ss_dssp T---TEEEEESC-SSSSEEEEEEETTTEEE---EEEEE--EECTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGGHHH
T ss_pred c---ccceeecc-ccCCceEEEEEeccccc---eeccc--ccCCcccccceEEEEEEEeCCEEEEEEeecccccccchhh
Confidence 2 22222111 11222345555543211 11111 1223334567889999999999999999999999888888
Q ss_pred HHHHHHHHHHhc
Q 003171 708 RNADFDHVYRTM 719 (842)
Q Consensus 708 Rn~~~~~I~~~l 719 (842)
|.+++..|++.+
T Consensus 133 ~~~q~~~~~~~l 144 (256)
T 4gz1_A 133 RIRQLKTVLGKM 144 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHhhhh
Confidence 989998888875
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.60 E-value=2.4e-06 Score=93.22 Aligned_cols=261 Identities=8% Similarity=-0.051 Sum_probs=138.4
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCccCCCCCcceeEE-------ecccCCcEEEEEEecCCCEEEeeC--
Q 003171 192 SSVMCMVGDEASGVVWSGH--RDGRIMCWKMNARLLDSDDGFGEVLS-------WQAHRGPVLSLCISSYGDLWSGSE-- 260 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs--~DGtIrlWdl~~g~~~~~~~~~~~~~-------l~gH~~~V~slafs~dG~L~SgS~-- 260 (842)
..+..++++++|+++++.. .++.++||.+.++ + ... ..+|-..+.+|+|+++|+||....
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g--------~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~ 87 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD--------G-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGN 87 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT--------E-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHH
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC--------C-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCC
Confidence 4688899999999998865 3454777877543 1 221 234667899999999999875442
Q ss_pred ----CCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe-----CC
Q 003171 261 ----GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-----GF 331 (842)
Q Consensus 261 ----DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~-----s~ 331 (842)
+..|.+||+.+++....+..... ... +......+++++.+..++.+ ..
T Consensus 88 ~~~~~~~i~~~d~~tg~~~~~~~~~~~----------------~~~-------~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQLSRVIYLPPP----------------ITL-------SNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp HHTSCCEEEEEETTTTEEEEEEECCTT----------------TSC-------TTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred CcCCCCeEEEEECCCCeEEEEEECChh----------------hcc-------cccccceEEEecCCCEEEEEcCccCCC
Confidence 57899999876432111100000 000 01122345555444454433 23
Q ss_pred CcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee
Q 003171 332 LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA 411 (842)
Q Consensus 332 ~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~ 411 (842)
.+|.+||+.+++..+++..+.... +.. . .+...+........++....+
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~------~~~-~-----------------------~~~~~g~~~~~~~~~g~~~~~- 193 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIA------PED-I-----------------------DLVIDGVPVQIGQPDGTVIRP- 193 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTS------CCS-C-----------------------CCEETTEECBEECTTSCEECC-
T ss_pred CeEEEEECCCCCEEEEecCCCccc------ccc-c-----------------------ceeECCEEEEeccCCCceece-
Confidence 589999999998877664321110 000 0 000000000001111111000
Q ss_pred cCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCC------CC-----eee--eeecCCccEEEEE--ecCCEEEEE
Q 003171 412 KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN------GN-----RLQ--DFQYLPFAVQCLC--TFGSQIWVG 475 (842)
Q Consensus 412 ~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~------g~-----~l~--~l~~H~~~V~sls--~dG~~LasG 475 (842)
...+..++++|||+ |+.+..++. ++|.+. +. ... ...++......++ .+|...++.
T Consensus 194 -------~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~ 265 (343)
T 2qe8_A 194 -------HLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGD 265 (343)
T ss_dssp -------CCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEE
T ss_pred -------ecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEc
Confidence 12346789999996 777776653 455431 11 111 1113333333344 467766666
Q ss_pred ecCcEEEEEeC-CCcccccccc-cccCEEEEEe--CCCEEEEEcCCCCeeec
Q 003171 476 YMNGIVQVLDL-EGNLLGGWVA-HSSPVIKMAV--GAGYIFTLANHGGIRGW 523 (842)
Q Consensus 476 s~DgtIrlWD~-~g~~i~~l~g-H~~~V~sla~--dg~~l~S~S~DgtIrvW 523 (842)
..++.|.+||. +|+....... +...+.++++ +++..++.+..+.+-+|
T Consensus 266 ~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 266 LAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp GGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred cCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 67899999999 6764322221 2456788876 45555555544444333
No 222
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.60 E-value=7.6e-06 Score=95.91 Aligned_cols=233 Identities=13% Similarity=0.054 Sum_probs=142.2
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCC--Cccce
Q 003171 199 GDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE--AIEKA 275 (842)
Q Consensus 199 ~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~--t~~~~ 275 (842)
.|+++.++++...+++|.++|..++ +.+.++.. ...+..++|||||+ |++++.|+.|.+||+. +.+..
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~--------~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v 233 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTY--------EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV 233 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTC--------CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCC--------eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe
Confidence 4556677888888999999999986 44545543 23567999999998 7888999999999985 32211
Q ss_pred eecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEc----CCCCEEEEeC--CCcEEEEEccCCcEEEEee
Q 003171 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD----HSRAKVWSAG--FLSFALWDARTRELLKVFN 349 (842)
Q Consensus 276 l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~----~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~ 349 (842)
.++ .. ......++++ +++..++.+. ..++.++|..|.++++++.
T Consensus 234 ~~i-----------------------~~-------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~ 283 (567)
T 1qks_A 234 AEI-----------------------KI-------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 283 (567)
T ss_dssp EEE-----------------------EC-------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred EEE-----------------------ec-------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence 110 00 1123456777 4788888776 3689999999998877654
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
..+.. . .. ..+ ....++.++..++
T Consensus 284 ~~~~~-------~---------------~~---------~~~-------------------------~p~~rva~i~~s~ 307 (567)
T 1qks_A 284 TRGMT-------Y---------------DE---------QEY-------------------------HPEPRVAAILASH 307 (567)
T ss_dssp CCEEC-------T---------------TT---------CCE-------------------------ESCCCEEEEEECS
T ss_pred ccccc-------c---------------cc---------ccc-------------------------cCCCceEEEEEcC
Confidence 21100 0 00 000 0011334455666
Q ss_pred CCc--EEEEeCCCeEEEEcCC-CCee--eeeecCCccEEE--EEecCCEEEEEe-cCcEEEEEeCC-Cccccccc-----
Q 003171 430 DGM--IWTGGANGLLLQWDPN-GNRL--QDFQYLPFAVQC--LCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWV----- 495 (842)
Q Consensus 430 dg~--l~Sgs~DgtIrlWD~~-g~~l--~~l~~H~~~V~s--ls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~----- 495 (842)
++. +++...+|.|.++|.. .+.+ ..+. ....... +.++|++++++. .+++|.++|++ ++++..+.
T Consensus 308 ~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 308 YRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp SSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 654 3344466889999883 3322 2221 2223344 456899887766 57899999997 56544332
Q ss_pred cccc-CEEEEEeCCCEEEEEc--CCCCeeeccccC
Q 003171 496 AHSS-PVIKMAVGAGYIFTLA--NHGGIRGWNVTS 527 (842)
Q Consensus 496 gH~~-~V~sla~dg~~l~S~S--~DgtIrvWd~~~ 527 (842)
.|.+ .+.-+.+++..++..+ .+++|.+++..+
T Consensus 387 Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 387 PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 3543 2332345555554333 468999999754
No 223
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.57 E-value=2.5e-05 Score=83.09 Aligned_cols=216 Identities=11% Similarity=0.130 Sum_probs=125.2
Q ss_pred CCEEEE-e-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003171 142 EEQLWA-G-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (842)
Q Consensus 142 ~~~l~~-~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWd 219 (842)
.+.||. . ..+.|..||.++.... .+ .. ...+.+++++++|+++ .+. ++.|.+||
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~------------------~~---~~-~~~~~~i~~~~dG~l~-v~~-~~~l~~~d 79 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQ------------------RV---TM-DAPVSSVALRQSGGYV-ATI-GTKFCALN 79 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEE------------------EE---EC-SSCEEEEEEBTTSSEE-EEE-TTEEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE------------------EE---eC-CCceEEEEECCCCCEE-EEE-CCeEEEEE
Confidence 344444 3 3678999998653211 01 11 4578999999999954 455 56788999
Q ss_pred CCCCccCCCCCcceeEEec-c-cCCcEEEEEEecCCCEEEeeC----------CCcEEEEeCCCccceeecCCCceeeeE
Q 003171 220 MNARLLDSDDGFGEVLSWQ-A-HRGPVLSLCISSYGDLWSGSE----------GGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 220 l~~g~~~~~~~~~~~~~l~-g-H~~~V~slafs~dG~L~SgS~----------DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
.+++. +..+.... + ....++.++++|+|+||.++. ....+||.++........ ..
T Consensus 80 ~~~g~------~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~------~~- 146 (297)
T 3g4e_A 80 WKEQS------AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY------FD- 146 (297)
T ss_dssp TTTTE------EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE------EE-
T ss_pred CCCCc------EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE------ee-
Confidence 98752 11111111 1 134589999999999876542 134466655431110000 00
Q ss_pred EEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe-C-CCcEEEEEc--cCCcEEEEeecCCceEeeeecccC
Q 003171 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-G-FLSFALWDA--RTRELLKVFNIDGQIENRVDMSLL 363 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~-s-~~tI~lWD~--~tg~~l~~l~~~~~~~~~~~~s~~ 363 (842)
. -.....++.++++..++.+ + .+.|.+||+ .+|.+... .
T Consensus 147 ------------~----------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~-----~---------- 189 (297)
T 3g4e_A 147 ------------Q----------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR-----R---------- 189 (297)
T ss_dssp ------------E----------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE-----E----------
T ss_pred ------------c----------cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc-----E----------
Confidence 0 0112346667777655433 3 356778876 45543100 0
Q ss_pred CCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEe-CCCeE
Q 003171 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLL 442 (842)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs-~DgtI 442 (842)
.+.. +.........++++++|.||.+. .++.|
T Consensus 190 ------------~~~~-----------------------------------~~~~~~~p~g~~~d~~G~lwva~~~~~~v 222 (297)
T 3g4e_A 190 ------------SVYK-----------------------------------LEKEEQIPDGMCIDAEGKLWVACYNGGRV 222 (297)
T ss_dssp ------------EEEE-----------------------------------CCGGGCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred ------------EEEE-----------------------------------CCCCCCCCCeeEECCCCCEEEEEcCCCEE
Confidence 0000 00011223457788999988776 45679
Q ss_pred EEEcC-CCCeeeeeecCCccEEEEEe---cCCEEEEEecC
Q 003171 443 LQWDP-NGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMN 478 (842)
Q Consensus 443 rlWD~-~g~~l~~l~~H~~~V~sls~---dG~~LasGs~D 478 (842)
.+||. +|+.+..+..+...++++++ +++.|++++..
T Consensus 223 ~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 223 IRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 99999 59999999888778888876 45677776653
No 224
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.57 E-value=2.8e-06 Score=102.13 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=57.7
Q ss_pred CeEEEEcC-CCCe--eeeeecCCccEEEEEecCCEEEEEecCc---EEEEEeCCCcccccccc-cccCEEEEE--eCCCE
Q 003171 440 GLLLQWDP-NGNR--LQDFQYLPFAVQCLCTFGSQIWVGYMNG---IVQVLDLEGNLLGGWVA-HSSPVIKMA--VGAGY 510 (842)
Q Consensus 440 gtIrlWD~-~g~~--l~~l~~H~~~V~sls~dG~~LasGs~Dg---tIrlWD~~g~~i~~l~g-H~~~V~sla--~dg~~ 510 (842)
+.|..||+ ++.+ .+++..|...+.+++++|++|+....++ .|++||++|+..+.+.. +.+.|..+. ++++.
T Consensus 305 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~ 384 (693)
T 3iuj_A 305 RRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPA 384 (693)
T ss_dssp CEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSC
T ss_pred CEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCE
Confidence 57888998 4443 4667777666558888999888776543 79999998765554432 334555555 35665
Q ss_pred EEEEcCC----CCeeeccccC
Q 003171 511 IFTLANH----GGIRGWNVTS 527 (842)
Q Consensus 511 l~S~S~D----gtIrvWd~~~ 527 (842)
++-...+ ++|..||+.+
T Consensus 385 l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 385 LYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EEEEEECSSSCCEEEEECTTT
T ss_pred EEEEecCCCCCCEEEEEECCC
Confidence 5433323 6788888754
No 225
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=98.57 E-value=2.3e-07 Score=95.93 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=80.7
Q ss_pred eeEEEEEEEeCCCCCCc-----ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhh
Q 003171 552 LKILAGTWNVGQGRASQ-----DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKI 626 (842)
Q Consensus 552 ~~i~~~twNv~~~~~~~-----~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~ 626 (842)
.+|-+.|||+.+..... +.+.++|.. .+|| ||+|||+.... .+.+.+.
T Consensus 12 ~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~--~~pD--Ii~LQEv~~~~-----------------------~~~l~~~ 64 (256)
T 4fva_A 12 FEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN--VNPD--ILFLQEVVDRD-----------------------LAPIDKL 64 (256)
T ss_dssp CEEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCS--EEEEEEECSTT-----------------------CHHHHGG
T ss_pred CEEEEEEEecCCCCCcCHHHHHHHHHHHHHH--cCCC--EEEEEecChhH-----------------------hHHHHHh
Confidence 46899999997643321 236666664 4577 46899985321 1123333
Q ss_pred ccCCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcchHH
Q 003171 627 LDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVN 706 (842)
Q Consensus 627 l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~ 706 (842)
+. .|.......-.+-...++.++.+. .++.... .+......++.+.+.+.+.+..+.++|+||.+....-.
T Consensus 65 ~~---~~~~~~~~~~~~~g~~il~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~ 135 (256)
T 4fva_A 65 QS---LYKIYYSNKGCQYYTAILVSKMFD----VEKHDVI--HFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHRP 135 (256)
T ss_dssp GG---TEEEEESSTTSSSEEEEEEETTCE----EEEEEEE--ECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGHH
T ss_pred cC---CceEeecCCCCCcceEEEEeeccc----ceecccc--cCCCCcccceeEEEEEEeCCeEEEEEEecCCCCCcchH
Confidence 31 222233333333445667776542 2222222 22233346788899999999999999999999887777
Q ss_pred HHHHHHHHHHHhc
Q 003171 707 RRNADFDHVYRTM 719 (842)
Q Consensus 707 ~Rn~~~~~I~~~l 719 (842)
+|.++++.+...+
T Consensus 136 ~~~~q~~~~~~~~ 148 (256)
T 4fva_A 136 QRCAQFGFCMDKV 148 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888887776643
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.54 E-value=7e-06 Score=90.24 Aligned_cols=257 Identities=16% Similarity=0.116 Sum_probs=145.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc---------CCcEEEEEEecCCCEEEeeCCCcEEEEeCCCcc
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH---------RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH---------~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~ 273 (842)
++.|+.++.++.|..+|..+| +.+-+.... ...+.+.....++.++.++.|+.|..+|..+++
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG--------~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDG--------KEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTC--------CEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEEccCC--------ceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 578899999999999999887 333222221 233444434456779999999999999998876
Q ss_pred ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCC
Q 003171 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDG 352 (842)
Q Consensus 274 ~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~ 352 (842)
...+...... .. ... +.. +..|+.++ ++.|..+|++||+.+-.+....
T Consensus 125 ~~W~~~~~~~----------------------~~---~~p---~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 125 VAWQTKVAGE----------------------AL---SRP---VVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp EEEEEECSSC----------------------CC---SCC---EEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred EEEEEeCCCc----------------------eE---cCC---EEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCC
Confidence 5433221100 00 001 111 33566655 5679999999999876654432
Q ss_pred ceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCc-EEEEee-cCccc------cCC-----
Q 003171 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAA-KGGFG------DDN----- 419 (842)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~-v~~v~~-~g~~~------~~~----- 419 (842)
... .........+. ...++++..++ +..+.. .|... ...
T Consensus 174 ~~~---~~~~~~~~~~~-------------------------~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 225 (376)
T 3q7m_A 174 PSL---SLRGESAPTTA-------------------------FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEI 225 (376)
T ss_dssp --------CCCCCCEEE-------------------------TTEEEECCTTTEEEEEETTTCCEEEEEECCC-------
T ss_pred Cce---eecCCCCcEEE-------------------------CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccc
Confidence 210 00000000000 01122222222 222221 11100 000
Q ss_pred Cc---eEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-Ccccccc
Q 003171 420 RR---TEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (842)
Q Consensus 420 ~~---v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l 494 (842)
.. +.....-.++.++.++.++.|..+|. +|+.+-... .....++..++..|+.++.++.|..+|.+ |+.+-..
T Consensus 226 ~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 226 DRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE--LGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp ----CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC--CCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred ccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc--CCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence 00 00000112678899998999999999 788765543 23455677788999999999999999986 6654333
Q ss_pred c-ccccCEEEEEeCCCEEEEEcCCCCeeeccccCC
Q 003171 495 V-AHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 495 ~-gH~~~V~sla~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
. .....+.+....+..++.++.++.|..+|..+.
T Consensus 304 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 304 SDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp CTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTC
T ss_pred cccCCCcccCCEEECCEEEEEeCCCeEEEEECCCC
Confidence 2 122233334445678888999999999997653
No 227
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.54 E-value=1.5e-06 Score=96.85 Aligned_cols=175 Identities=7% Similarity=0.034 Sum_probs=109.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc---CCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEE
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL---DSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~---~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (842)
.++..|++++..+++++|+.|+. ++|++....- +....++.. ....+.+ |+.|+| |+. |+.+ .+++|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l-~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKA-VVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEE-EEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEE-EEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 36889999999999999999865 4698654210 000012221 2335667 999999 776 6677 88999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKV 347 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~ 347 (842)
|+.+....-..... ...+..+...+.. .+...+++++.+||+.++....
T Consensus 112 dv~sl~~~~~~~~~-----------------------------~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~- 160 (388)
T 1xip_A 112 DLEELSEFRTVTSF-----------------------------EKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ- 160 (388)
T ss_dssp ESSSTTCEEEEEEC-----------------------------SSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE-
T ss_pred EchhhhccCcccee-----------------------------ecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc-
Confidence 99764321111000 0011122222211 3333456899999998766421
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
+ ...|.++++
T Consensus 161 ~----------------------------------------------------------------------~~~Vs~v~W 170 (388)
T 1xip_A 161 L----------------------------------------------------------------------AQNVTSFDV 170 (388)
T ss_dssp E----------------------------------------------------------------------EESEEEEEE
T ss_pred c----------------------------------------------------------------------cCCceEEEE
Confidence 0 012557889
Q ss_pred CCCCcEEEEeCCCeEEEEcCCCCe---eeee------e---cCCccEEEEEec--CCEEEE
Q 003171 428 SIDGMIWTGGANGLLLQWDPNGNR---LQDF------Q---YLPFAVQCLCTF--GSQIWV 474 (842)
Q Consensus 428 s~dg~l~Sgs~DgtIrlWD~~g~~---l~~l------~---~H~~~V~sls~d--G~~Las 474 (842)
||+| ++.|..||+|++|+..+.. .+++ . +|...|.+|... +.++++
T Consensus 171 SpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 171 TNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999 7889999999999995543 5556 2 478889999764 445543
No 228
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=98.51 E-value=3.5e-07 Score=93.22 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=38.9
Q ss_pred CCCCeeEEEEEEeCeEEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 675 GNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 675 gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
.....+.+.+.+.+..+.++|+||.+.....+.|.++++.|++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~~~~r~~q~~~~~~~l 138 (250)
T 4f1h_A 94 MMRNLLIAQVTFSGQKLYLMTSHLESCKNQSQERTKQLRVVLQKI 138 (250)
T ss_dssp SCCEEEEEEEEETTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEecCCcEEEEeccccccccccHHHHHHHHHHHHHHH
Confidence 346678888889999999999999998888888999999998875
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.49 E-value=5.3e-08 Score=108.01 Aligned_cols=190 Identities=14% Similarity=0.109 Sum_probs=101.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCC
Q 003171 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (842)
Q Consensus 202 dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~ 280 (842)
++++|++|+.||.|+.||..+| +.+-++.. +++.+..+..+|. +++++.|+.|+.||..+++...+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG--------~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~ 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG--------SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPF 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC--------CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred eCCEEEEEcCCCEEEEEECCCC--------CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeec
Confidence 5789999999999999999998 55555554 5565666667776 66788999999999977654333221
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeee
Q 003171 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (842)
Q Consensus 281 ~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (842)
.... .... +.-+ . .+.+|+.++ ++++..||++||+.+..+..+..
T Consensus 78 ~~~~-----------------~~~~-----sp~~-----~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~------ 123 (369)
T 2hz6_A 78 TIPE-----------------LVQA-----SPCR-----S-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA------ 123 (369)
T ss_dssp CHHH-----------------HHTT-----CSCC-----------CCCCEEEEEEEEECCC-------------------
T ss_pred cCcc-----------------cccc-----CceE-----e-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc------
Confidence 1000 0000 0000 0 122344433 46799999999987543321100
Q ss_pred cccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC-CCCcEEEEeC
Q 003171 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS-IDGMIWTGGA 438 (842)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s-~dg~l~Sgs~ 438 (842)
..++ .++.+++++.
T Consensus 124 -----------------------------------------------------------------~~~~p~~~~v~~~~~ 138 (369)
T 2hz6_A 124 -----------------------------------------------------------------DSLSPSTSLLYLGRT 138 (369)
T ss_dssp --------------------------------------------------------------------------EEEEEE
T ss_pred -----------------------------------------------------------------ccccccCCEEEEEec
Confidence 0011 2345888888
Q ss_pred CCeEEEEcC-CCCeeeeeecCCccEEEEEecC-----CEEEEEecCcEEEEEeCC-CcccccccccccCEEE
Q 003171 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG-----SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (842)
Q Consensus 439 DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG-----~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s 503 (842)
|+.|+.||. +|+.+-.+..+. ..+...++ ..+++++.||.|..||.+ |+.+-... ..++|.+
T Consensus 139 dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~ 207 (369)
T 2hz6_A 139 EYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVA 207 (369)
T ss_dssp EEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEE
T ss_pred CCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEE
Confidence 999999999 788766654322 11222233 578888999999999986 77644443 2344544
No 230
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.48 E-value=8.5e-05 Score=82.30 Aligned_cols=275 Identities=8% Similarity=-0.078 Sum_probs=145.5
Q ss_pred EEcCCCCEEEEEeC--CC---cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee----------CC
Q 003171 198 VGDEASGVVWSGHR--DG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------EG 261 (842)
Q Consensus 198 a~dpdg~~LaSGs~--DG---tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS----------~D 261 (842)
...|+++.++.... .. +|.++|..++ +.+.++..-..+ .++|||||+ |+.+. .+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~--------~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~ 96 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSG--------SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRT 96 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCC--------eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCC
Confidence 34577888887754 22 8899999886 455555443445 899999998 66543 47
Q ss_pred CcEEEEeCCCccceeecCCC-ceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC---CCcEEEE
Q 003171 262 GGIKIWPWEAIEKALSLKPE-ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALW 337 (842)
Q Consensus 262 gtIrvWd~~t~~~~l~~~~~-~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s---~~tI~lW 337 (842)
++|.+||..+.+..-..... ... ... ...-..++.++++..++.+. ..+|.++
T Consensus 97 ~~v~viD~~t~~~~~~i~~~~~~~-----------------~~~------g~~p~~~~~spDG~~l~v~n~~~~~~v~vi 153 (373)
T 2mad_H 97 DYVEVFDPVTFLPIADIELPDAPR-----------------FDV------GPYSWMNANTPNNADLLFFQFAAGPAVGLV 153 (373)
T ss_pred CeEEEEECCCCcEEEEEECCCccc-----------------ccc------CCCccceEECCCCCEEEEEecCCCCeEEEE
Confidence 88999999764322111000 000 000 01123567778888888764 2579999
Q ss_pred EccCCcEEEE-eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEE-EEeecCcc
Q 003171 338 DARTRELLKV-FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVR-RVAAKGGF 415 (842)
Q Consensus 338 D~~tg~~l~~-l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~-~v~~~g~~ 415 (842)
| .+++.+.. +...+.. .+.+..... -+.+++++...++.....+. .......+
T Consensus 154 D-~t~~~~~~~i~~~~~~----~~~~~~~~~--------------------~~~~~~dg~~~~vd~~g~~~~~~~~~~~~ 208 (373)
T 2mad_H 154 V-QGGSSDDQLLSSPTCY----HIHPGAPST--------------------FYLLCAQGGLAKTDHAGGAAGAGLVGAML 208 (373)
T ss_pred E-CCCCEEeEEcCCCceE----EEEeCCCce--------------------EEEEcCCCCEEEEECCCcEEEEEeccccc
Confidence 9 99998777 5432211 110000000 00111111111111100111 00000001
Q ss_pred ccCCCceEEEEECCC-CcEEEEeCCCeEEEEcCCCC---eeeeeecC----------Cc--cEEEEEecCCEEEEEec--
Q 003171 416 GDDNRRTEALTTSID-GMIWTGGANGLLLQWDPNGN---RLQDFQYL----------PF--AVQCLCTFGSQIWVGYM-- 477 (842)
Q Consensus 416 ~~~~~~v~al~~s~d-g~l~Sgs~DgtIrlWD~~g~---~l~~l~~H----------~~--~V~sls~dG~~LasGs~-- 477 (842)
.+.........++++ +.++..+..+.|.+.|+.+. .+..+... .. ....+.++|++|+++..
T Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~ 288 (373)
T 2mad_H 209 TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ 288 (373)
T ss_pred cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccC
Confidence 111001112233343 34444446778888888432 22333211 11 12345678888888653
Q ss_pred --------CcEEEEEeCC-CcccccccccccCEEEEE--eCCC-EEEEEc-CCCCeeeccccCCCCC
Q 003171 478 --------NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAG-YIFTLA-NHGGIRGWNVTSPGPL 531 (842)
Q Consensus 478 --------DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~-~l~S~S-~DgtIrvWd~~~~~~~ 531 (842)
++.|.+.|++ ++.++++..- ...++++ +||+ .++++. .+++|.++|+.+...+
T Consensus 289 ~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 289 SAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 3589999997 5666666432 2355655 6888 677777 5899999998765443
No 231
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.47 E-value=8.5e-06 Score=98.56 Aligned_cols=71 Identities=6% Similarity=-0.088 Sum_probs=50.5
Q ss_pred EEEEEcCCCCEEEEEeCCCc--------------EEEEECCCCccCCCCCcceeEEe--cccCCcEEEEEEecCCC-EEE
Q 003171 195 MCMVGDEASGVVWSGHRDGR--------------IMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGD-LWS 257 (842)
Q Consensus 195 ~~la~dpdg~~LaSGs~DGt--------------IrlWdl~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~-L~S 257 (842)
..++|+|| +.|+.++.|+. |++|++.++. ......+ ..|...+.++.|||||+ |+.
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~------~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~ 284 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ------SADQPVFATPELPKRGHGASVSSDGRWVVI 284 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCG------GGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCc------hhCEEEeccCCCCeEEEEEEECCCCCEEEE
Confidence 46889999 99999888765 8899997752 0112333 34445689999999998 655
Q ss_pred eeCC-----CcEEEEeCCCc
Q 003171 258 GSEG-----GGIKIWPWEAI 272 (842)
Q Consensus 258 gS~D-----gtIrvWd~~t~ 272 (842)
.+.+ ..|.+||++++
T Consensus 285 ~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 285 TSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp EEECTTCSCCEEEEEEEETT
T ss_pred EEEccCCCcceEEEEECCCC
Confidence 4433 48999998654
No 232
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=98.46 E-value=7.6e-07 Score=93.01 Aligned_cols=149 Identities=14% Similarity=0.089 Sum_probs=80.9
Q ss_pred EEEEEEEeCCCCCCc-----ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhcc
Q 003171 554 ILAGTWNVGQGRASQ-----DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILD 628 (842)
Q Consensus 554 i~~~twNv~~~~~~~-----~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~ 628 (842)
+.+.|||+.+..... +.+.++|.. .+||| |+|||+...... +.+ .+......|...+.+.|.
T Consensus 4 l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~--~~~DI--i~LQEv~~~~~~-------~~~--~~~~~~d~~~~~~~~~l~ 70 (266)
T 3teb_A 4 MKILTVNVHAWLEENQMEKIDILARTIAE--KQYDV--IAMQEVNQLMNN-------KII--FDDIREENYAWVLLETLQ 70 (266)
T ss_dssp EEEEEEECCTTCSTTHHHHHHHHHHHHHH--HTCSE--EEEEEEEEETTS-------CEE--ETTEETTCHHHHHHHHHT
T ss_pred eEEEEEecccccCcchhHHHHHHHHHHHh--cCCCE--EEEEEccccccc-------ccc--ccccccccHHHHHHHHHH
Confidence 778999996553321 234445543 45675 679999632100 000 000011123333333332
Q ss_pred C--CCceEEEee-----eeceeeEEEEEEeccccCccCceeeceee-cccCcccCCCCeeEEEEEEeCeEEEEEeecCcC
Q 003171 629 D--GSTFERVGS-----RQLAGLLIAVWVRKNLKDYVGDVDVAAVP-CGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAA 700 (842)
Q Consensus 629 ~--~~~y~~v~s-----~~l~g~~l~vf~r~~~~~~i~~v~~~~v~-~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa 700 (842)
. +..|..+.. ..-.+-.++||.|..+. +.+.-..+ +.-...+..++++.+++.+.+..+.++|+||.+
T Consensus 71 ~~~~~~y~~~~~~~~~~~~~~~~g~ailsr~~~~----~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~~~Hl~~ 146 (266)
T 3teb_A 71 KYTDTDYYLHWSNSHIGFGKYNEGVAVITRHKIK----AEDEFYCTFAQSVRTISARRIVSITINYEGQDIEFYSCHMNL 146 (266)
T ss_dssp TTCCSCCEEEEEEEEECSTTEEEEEEEEESSCCS----EEEEEECSSCCCTTCTTCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred HhCCCCeEEEEeccccCccccCCeEEEEECceec----CceeEEeCCCCCCCCcccceEEEEEEEeCCeEEEEEEecCCC
Confidence 2 124543311 12333355666665442 22211111 110111456899999999999999999999998
Q ss_pred CcchHHHHHHHHHHHHHhc
Q 003171 701 HLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 701 ~~~~~~~Rn~~~~~I~~~l 719 (842)
.....+.|.++++.|++.+
T Consensus 147 ~~~~~~~r~~q~~~l~~~~ 165 (266)
T 3teb_A 147 PNCETEDMGKNIQTILNRT 165 (266)
T ss_dssp TTCTTCCHHHHHHHHHTSS
T ss_pred ccCChHHHHHHHHHHHHHH
Confidence 8655667889998887754
No 233
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.46 E-value=4.6e-05 Score=85.53 Aligned_cols=106 Identities=8% Similarity=0.034 Sum_probs=70.7
Q ss_pred EEEecC-CEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 003171 137 TIVCTE-EQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (842)
Q Consensus 137 ~l~~~~-~~l~~~~--D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG 213 (842)
.|+.+. ..||++. ++.|++||+++..... + ........ ++++++++.|+.+..++
T Consensus 135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~------------------~---~~~~~~~~-ia~~~~g~~l~~~d~~~ 192 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT------------------V---HPGFKGGK-PAVTKDKQRVYSIGWEG 192 (409)
T ss_dssp EEEECSTTEEEEEETTTTEEEEEETTTTEEEE------------------E---EETCCBCB-CEECTTSSEEEEEBSST
T ss_pred EEEEeCCCCEEEEecCCCcEEEEECCCCEEEE------------------e---eccCCCCc-eeEecCCCcEEEEecCC
Confidence 455553 3677753 4799999987533211 0 11011222 89999999999999877
Q ss_pred --cEEEEECCCCccCCCCCcceeEEe---cc-cCCcEEEEEEec-CCCEEEeeCCCcEEEEeCCCc
Q 003171 214 --RIMCWKMNARLLDSDDGFGEVLSW---QA-HRGPVLSLCISS-YGDLWSGSEGGGIKIWPWEAI 272 (842)
Q Consensus 214 --tIrlWdl~~g~~~~~~~~~~~~~l---~g-H~~~V~slafs~-dG~L~SgS~DgtIrvWd~~t~ 272 (842)
.|.+|+..++ .....+ .. +...+.+++++| +|.|+.+..++.|+.||.++.
T Consensus 193 ~~~I~~~d~~~~--------~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~ 250 (409)
T 3hrp_A 193 THTVYVYMKASG--------WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ 250 (409)
T ss_dssp TCEEEEEEGGGT--------TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC
T ss_pred CceEEEEEcCCC--------ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC
Confidence 6888887664 122222 12 456678999999 677877777889999998764
No 234
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.43 E-value=7.3e-07 Score=98.68 Aligned_cols=132 Identities=18% Similarity=0.158 Sum_probs=85.0
Q ss_pred eeEEEEEEEeCCCCCC-----cccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhh
Q 003171 552 LKILAGTWNVGQGRAS-----QDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKI 626 (842)
Q Consensus 552 ~~i~~~twNv~~~~~~-----~~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~ 626 (842)
.+|-+.||||++.... ...+.+||.. .+||| |||||+.... ...|.+.
T Consensus 118 ~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~--~~PDI--V~LQEv~~~~-----------------------~~~l~~~ 170 (362)
T 4gew_A 118 FEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN--VNPDI--LFLQEVVDRD-----------------------LAPIDKL 170 (362)
T ss_dssp CEEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECSTT-----------------------CHHHHGG
T ss_pred CeEEEEEEEeCCCCCcCHHHHHHHHHHHHHH--cCCCE--EEEEcCChhH-----------------------hHHHHHh
Confidence 4588999999865332 1346777774 45674 6899984311 1233333
Q ss_pred ccCCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcchHH
Q 003171 627 LDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVN 706 (842)
Q Consensus 627 l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~ 706 (842)
+ ..|.......-++-..+||.|+.+. .+...... +.+.....+++.+++.+.+..|.++|+||.+......
T Consensus 171 ~---~~y~~~~~~~~~~~G~aIlsk~~i~----~~~~~~~~--~~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~~~ 241 (362)
T 4gew_A 171 Q---SLYKIYYSNKGCQYYTAILVSKMFD----VEKHDVIH--FQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHRP 241 (362)
T ss_dssp G---GTEEEEESSTTSSSEEEEEEETTEE----EEEEEEEE--CTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGHH
T ss_pred c---CCceEEeCCCCCCceEEEEEeccCc----cccccccC--CCCCcccceEEEEEEEECCEEEEEEEecCCccccchh
Confidence 3 2355555555555567788886442 22222222 1112234678888999999999999999999888888
Q ss_pred HHHHHHHHHHHhc
Q 003171 707 RRNADFDHVYRTM 719 (842)
Q Consensus 707 ~Rn~~~~~I~~~l 719 (842)
+|.+++..+...+
T Consensus 242 ~R~~Q~~~l~~~~ 254 (362)
T 4gew_A 242 QRCAQFGFCMDKV 254 (362)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8999988887654
No 235
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.43 E-value=5.7e-07 Score=94.07 Aligned_cols=128 Identities=15% Similarity=0.150 Sum_probs=78.2
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCCceE
Q 003171 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634 (842)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~~y~ 634 (842)
-+.|||+.+.....+.+.++|.. .+|| ||||||+...... ...+.+. .+ +..|.
T Consensus 2 rv~t~Nv~~~~~~~~~i~~~i~~--~~~D--ii~LQE~~~~~~~-------------------~~~~~l~-~~--gy~~~ 55 (268)
T 1ako_A 2 KFVSFNINGLRARPHQLEAIVEK--HQPD--VIGLQETKVHDDM-------------------FPLEEVA-KL--GYNVF 55 (268)
T ss_dssp EEEEEECSCGGGCHHHHHHHHHH--HCCS--EEEEECCCCCGGG-------------------CCHHHHH-HT--TCEEE
T ss_pred EEEEEehhHHHHHHHHHHHHHHH--cCCC--EEEEEeccCChhh-------------------CCHhHhc-cC--CCcEE
Confidence 57899998765555667777764 4567 5789999653210 0011121 12 33333
Q ss_pred EEeeeeceeeEEEEEEeccccCccCceeeceeecccCc--ccCCCCeeEEEEEEeCeEEEEEeecCcCCcc-----hHHH
Q 003171 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR--AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE-----AVNR 707 (842)
Q Consensus 635 ~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~--~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~-----~~~~ 707 (842)
. ...-++-.++||.|..+. .+. .++.. ...+++.+.+++.+.+..|+++|+||.+... ....
T Consensus 56 ~--~~~~~~~G~ailsr~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~ 124 (268)
T 1ako_A 56 Y--HGQKGHYGVALLTKETPI----AVR-----RGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPA 124 (268)
T ss_dssp E--EEETTEEEEEEEESSCCS----EEE-----ESSTTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHH
T ss_pred E--eCCCCcceEEEEEecCcc----eee-----eCCCCcccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHH
Confidence 3 223344556777887653 222 23321 1246788999999988999999999987753 3456
Q ss_pred HHHHHHHHHHhc
Q 003171 708 RNADFDHVYRTM 719 (842)
Q Consensus 708 Rn~~~~~I~~~l 719 (842)
|.+.++.|.+.+
T Consensus 125 r~~~~~~l~~~~ 136 (268)
T 1ako_A 125 KAQFYQNLQNYL 136 (268)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 236
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.42 E-value=0.0003 Score=77.90 Aligned_cols=69 Identities=9% Similarity=0.050 Sum_probs=49.5
Q ss_pred EEEECCCCc-EEEEeC----------CCeEEEEcC-CCCeeeeeecCCccEEE--EEecCC-EEEEEe-cCcEEEEEeCC
Q 003171 424 ALTTSIDGM-IWTGGA----------NGLLLQWDP-NGNRLQDFQYLPFAVQC--LCTFGS-QIWVGY-MNGIVQVLDLE 487 (842)
Q Consensus 424 al~~s~dg~-l~Sgs~----------DgtIrlWD~-~g~~l~~l~~H~~~V~s--ls~dG~-~LasGs-~DgtIrlWD~~ 487 (842)
.+++++|+. ++.+.. ++.|.+.|+ +++.++++.... ...+ +++||+ +++++. .+++|.++|++
T Consensus 271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 467888876 666542 357999999 678888876422 3344 467899 788877 48999999987
Q ss_pred -Cccccc
Q 003171 488 -GNLLGG 493 (842)
Q Consensus 488 -g~~i~~ 493 (842)
++.+++
T Consensus 350 t~~vv~~ 356 (373)
T 2mad_H 350 AGDQDQS 356 (373)
T ss_pred CCCEEee
Confidence 566655
No 237
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.40 E-value=8.2e-05 Score=80.43 Aligned_cols=213 Identities=12% Similarity=0.113 Sum_probs=122.7
Q ss_pred EEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003171 144 QLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 144 ~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~ 222 (842)
.+|+. .++.|.+||.++..... + .. ...+.+++++++|+++++ +.+| |.+||..+
T Consensus 63 l~~~d~~~~~i~~~d~~~~~~~~------------------~---~~-~~~v~~i~~~~dg~l~v~-~~~g-l~~~d~~~ 118 (326)
T 2ghs_A 63 AWWFNILERELHELHLASGRKTV------------------H---AL-PFMGSALAKISDSKQLIA-SDDG-LFLRDTAT 118 (326)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEE------------------E---EC-SSCEEEEEEEETTEEEEE-ETTE-EEEEETTT
T ss_pred EEEEECCCCEEEEEECCCCcEEE------------------E---EC-CCcceEEEEeCCCeEEEE-ECCC-EEEEECCC
Confidence 34454 36789999986532110 1 01 346899999999876654 4554 88999887
Q ss_pred CccCCCCCcceeEEec-cc-CCcEEEEEEecCCCEEEeeCC-----CcEEEEeCCCccceeecCCCceeeeEEEEeecee
Q 003171 223 RLLDSDDGFGEVLSWQ-AH-RGPVLSLCISSYGDLWSGSEG-----GGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (842)
Q Consensus 223 g~~~~~~~~~~~~~l~-gH-~~~V~slafs~dG~L~SgS~D-----gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~ 295 (842)
+. +....... ++ ...+++++++|+|++|.++.+ +..+||.+++++ +.. ..
T Consensus 119 g~------~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~--~~~------~~--------- 175 (326)
T 2ghs_A 119 GV------LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK--VTK------LF--------- 175 (326)
T ss_dssp CC------EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE--EEE------EE---------
T ss_pred Cc------EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc--EEE------ee---------
Confidence 62 11111111 11 246899999999998755432 345566553211 100 00
Q ss_pred ecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEcc--CC-cEEEEeecCCceEeeeecccCCCccccc
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDAR--TR-ELLKVFNIDGQIENRVDMSLLPDFAMED 370 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~--tg-~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (842)
.. ......++.++++..+|.+. .+.|.+||+. +| ++. ..
T Consensus 176 ---~~----------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~-----~~------------------ 219 (326)
T 2ghs_A 176 ---AD----------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG-----KA------------------ 219 (326)
T ss_dssp ---EE----------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS-----CC------------------
T ss_pred ---CC----------CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc-----Cc------------------
Confidence 00 01233566677776665443 3568888864 44 210 00
Q ss_pred ceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEe-CCCeEEEEcCCC
Q 003171 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLLLQWDPNG 449 (842)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs-~DgtIrlWD~~g 449 (842)
+ .+.. +.........++++++|.+|.+. .++.|.+||.+|
T Consensus 220 --~--~~~~-----------------------------------~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g 260 (326)
T 2ghs_A 220 --E--VFID-----------------------------------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG 260 (326)
T ss_dssp --E--EEEE-----------------------------------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred --e--EEEE-----------------------------------CCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC
Confidence 0 0000 00001123457788899988776 457899999998
Q ss_pred CeeeeeecCCccEEEEEe---cCCEEEEEecC
Q 003171 450 NRLQDFQYLPFAVQCLCT---FGSQIWVGYMN 478 (842)
Q Consensus 450 ~~l~~l~~H~~~V~sls~---dG~~LasGs~D 478 (842)
+.+..+..+...+.++++ +++.|++++..
T Consensus 261 ~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 261 NHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 888888877777888875 45678776654
No 238
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.39 E-value=3e-05 Score=82.78 Aligned_cols=57 Identities=11% Similarity=0.222 Sum_probs=43.9
Q ss_pred EEECCCCcEEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEE
Q 003171 425 LTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQV 483 (842)
Q Consensus 425 l~~s~dg~l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrl 483 (842)
++++++|.||+++.++ |.+||.+|+.+..+..+. .+.++++ +++.||.++.++..++
T Consensus 244 i~~d~~G~lwv~~~~g-v~~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 244 FCVDRGGWLWSSSGTG-VCVFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EEECTTSCEEECCSSE-EEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred EEECCCCCEEEecCCc-EEEECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 5678899999988665 999999999888887655 4666655 7889999887654443
No 239
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.36 E-value=0.00013 Score=80.92 Aligned_cols=103 Identities=7% Similarity=-0.042 Sum_probs=69.5
Q ss_pred cCCEEEEec------CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe----
Q 003171 141 TEEQLWAGG------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH---- 210 (842)
Q Consensus 141 ~~~~l~~~~------D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs---- 210 (842)
+++.+|... ++.|.|.|.++...... + . . |..| . ++++|||+.|+.++
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~-----------------I-~-v-G~~P-~-va~spDG~~lyVan~~~~ 100 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-----------------I-D-G-GFLP-N-PVVADDGSFIAHASTVFS 100 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-----------------E-E-E-CSSC-E-EEECTTSSCEEEEEEEEE
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEE-----------------E-E-C-CCCC-c-EEECCCCCEEEEEccccc
Confidence 566777632 56899999877543321 1 1 1 2445 4 99999999998876
Q ss_pred ------CCCcEEEEECCCCccCCCCCcceeEEec-cc------CCcEEEEEEecCCC-EEEee--CCCcEEEEeCCCcc
Q 003171 211 ------RDGRIMCWKMNARLLDSDDGFGEVLSWQ-AH------RGPVLSLCISSYGD-LWSGS--EGGGIKIWPWEAIE 273 (842)
Q Consensus 211 ------~DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH------~~~V~slafs~dG~-L~SgS--~DgtIrvWd~~t~~ 273 (842)
.+++|.+||..+. +...++. +. ...-..++|+|||+ |+.+. .+++|-|+|+.+.+
T Consensus 101 r~~~G~~~~~VsviD~~t~--------~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~ 171 (386)
T 3sjl_D 101 RIARGERTDYVEVFDPVTL--------LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 171 (386)
T ss_dssp ETTEEEEEEEEEEECTTTC--------CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred ccccCCCCCEEEEEECCCC--------eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc
Confidence 3678999999986 4444432 10 01234689999998 66554 37899999998754
No 240
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.31 E-value=0.00011 Score=82.79 Aligned_cols=103 Identities=7% Similarity=-0.085 Sum_probs=68.5
Q ss_pred cCCEEEEec--C----CCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe----
Q 003171 141 TEEQLWAGG--E----NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH---- 210 (842)
Q Consensus 141 ~~~~l~~~~--D----~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs---- 210 (842)
+...+|+.. + +.|.+.|.++...... + . + |..| -++++|||+.|+.+.
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~-----------------I-~-v-G~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGM-----------------T-D-G-GFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-----------------E-E-E-CSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEE-----------------E-E-C-CCCC--ceEECCCCCEEEEEecccc
Confidence 445566532 2 6899999987554321 1 1 1 2445 799999999999887
Q ss_pred ------CCCcEEEEECCCCccCCCCCcceeEEec-c------cCCcEEEEEEecCCC-EEEeeC--CCcEEEEeCCCcc
Q 003171 211 ------RDGRIMCWKMNARLLDSDDGFGEVLSWQ-A------HRGPVLSLCISSYGD-LWSGSE--GGGIKIWPWEAIE 273 (842)
Q Consensus 211 ------~DGtIrlWdl~~g~~~~~~~~~~~~~l~-g------H~~~V~slafs~dG~-L~SgS~--DgtIrvWd~~t~~ 273 (842)
.+++|.++|..+. +.+.++. + +...-..++|+|||+ |+.+.. +++|-+.|+.+.+
T Consensus 141 ~~~~G~~~~~VsviD~~t~--------~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k 211 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTF--------LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT 211 (426)
T ss_dssp ETTEEEEEEEEEEECTTTC--------CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred ccccCCCCCEEEEEECCCC--------cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe
Confidence 3678999999886 3443332 1 011234688999998 666653 6889999997743
No 241
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.23 E-value=1.5e-05 Score=88.74 Aligned_cols=99 Identities=11% Similarity=0.067 Sum_probs=79.5
Q ss_pred eEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-Ccccccccccc
Q 003171 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (842)
Q Consensus 422 v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (842)
|.+|+| |+. |+++ .++.|++||+ +.........|...|.++.+....+++++.||+|.+||++ ++... +.
T Consensus 90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~ 162 (388)
T 1xip_A 90 VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LA 162 (388)
T ss_dssp EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EE
T ss_pred eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----cc
Confidence 778889 555 6776 8899999999 4444455667788888887766569999999999999997 44432 56
Q ss_pred cCEEEEEeCCCEEEEEcCCCCeeeccccC
Q 003171 499 SPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 499 ~~V~sla~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
..|.|++++++.++.|..||+|++|+...
T Consensus 163 ~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~ 191 (388)
T 1xip_A 163 QNVTSFDVTNSQLAVLLKDRSFQSFAWRN 191 (388)
T ss_dssp ESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred CCceEEEEcCCceEEEEcCCcEEEEcCCC
Confidence 78999999888899999999999997644
No 242
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.17 E-value=0.00036 Score=74.94 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=51.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec--------------------ccCCcEEEEEEec-
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--------------------AHRGPVLSLCISS- 251 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~--------------------gH~~~V~slafs~- 251 (842)
...+++++++|+++|++..++.|..|+..++ ....+. +..+.+.+|++++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~ 90 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNS---------GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ 90 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTT---------CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCC---------ceEEEecccccccccccccccchhccccCCCCceEEEcCC
Confidence 3456889999988999999999999988764 122221 1113578999997
Q ss_pred CCCEEEeeCCCcEEEEeCCC
Q 003171 252 YGDLWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 252 dG~L~SgS~DgtIrvWd~~t 271 (842)
+|+||.+...+.|.++|..+
T Consensus 91 ~g~l~v~d~~~~i~~~d~~~ 110 (322)
T 2fp8_A 91 NNQLYIVDCYYHLSVVGSEG 110 (322)
T ss_dssp TTEEEEEETTTEEEEECTTC
T ss_pred CCcEEEEECCCCEEEEeCCC
Confidence 88898886666688888754
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.15 E-value=2.9e-07 Score=102.07 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=51.8
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEeC
Q 003171 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVG 507 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~d 507 (842)
++.+++|+.|+.|+.||. +|+.+.++..+.. ...++++..|++|+.|++|+.||.+ |+.+-.+..+. ..+.+.+
T Consensus 92 ~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~--~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~ 167 (369)
T 2hz6_A 92 DGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA--DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPE 167 (369)
T ss_dssp ---CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCC
T ss_pred CCEEEEEeCCCEEEEEECCCCcEEEEecCCCc--ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCcccc
Confidence 456777888999999999 7988877765542 2345678899999999999999986 77654443222 1222233
Q ss_pred C-----CEEEEEcCCCCeeeccccC
Q 003171 508 A-----GYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 508 g-----~~l~S~S~DgtIrvWd~~~ 527 (842)
+ ..++.++.|+.|..||..+
T Consensus 168 ~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 168 DDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp CCTTCCCCEEEEETSCEEEEECTTT
T ss_pred CCccccceEEEECCCCEEEEEECCC
Confidence 3 5678889999999999765
No 244
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.07 E-value=0.0003 Score=84.37 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=39.0
Q ss_pred CcEEEEEeCC-CcccccccccccCEE-EEEeCCCEEEEEcCCCCeeeccccCCCCC
Q 003171 478 NGIVQVLDLE-GNLLGGWVAHSSPVI-KMAVGAGYIFTLANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V~-sla~dg~~l~S~S~DgtIrvWd~~~~~~~ 531 (842)
+|+|+.||++ |+.+-....|..... .+...+..++.++.|+.++.||.++...+
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 4889999996 776544444432222 34567889999999999999998876543
No 245
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.07 E-value=0.00017 Score=86.40 Aligned_cols=117 Identities=14% Similarity=0.075 Sum_probs=65.9
Q ss_pred cCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCC--eeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003171 141 TEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAP--FKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (842)
Q Consensus 141 ~~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrl 217 (842)
.++.+|+++ ++.|.-+|.+++...... .. .......+ +..... . .+++ +++.|+.++.|+.+..
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~---~~---~~~~~~~~~~~~~~~~-~----~~a~--~~~~v~v~~~dg~l~a 142 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTY---DP---QIDRSTGFKGCCDVVN-R----GVAL--WKGKVYVGAWDGRLIA 142 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEE---CC---CCCGGGGGGSSSCSCC-C----CCEE--ETTEEEEECTTSEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEE---cC---CCCccccccccccCCC-C----CceE--ECCEEEEEcCCCEEEE
Confidence 567777754 678888998776544320 00 00000000 000000 1 1233 3578999999999999
Q ss_pred EECCCCccCCCCCcceeEEeccc-C----CcEEEEEEecCCCEEEeeC------CCcEEEEeCCCccceeec
Q 003171 218 WKMNARLLDSDDGFGEVLSWQAH-R----GPVLSLCISSYGDLWSGSE------GGGIKIWPWEAIEKALSL 278 (842)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~gH-~----~~V~slafs~dG~L~SgS~------DgtIrvWd~~t~~~~l~~ 278 (842)
+|..+| +.+-++..+ . ..+++--...++.++.++. ++.|+.+|..+++...++
T Consensus 143 lD~~tG--------~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 143 LDAATG--------KEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp EETTTC--------CEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EECCCC--------CEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 999998 555444433 1 1222211122566665553 799999999988766554
No 246
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.04 E-value=1.3e-05 Score=84.04 Aligned_cols=134 Identities=19% Similarity=0.291 Sum_probs=75.3
Q ss_pred eEEEEEEEeCCCCCCc---------ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHH
Q 003171 553 KILAGTWNVGQGRASQ---------DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~---------~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l 623 (842)
.+-+.|||+....+.. +.+.++|.. .++| ||||||+... ..+.|
T Consensus 3 ~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~--~~~D--Iv~LQEv~~~-----------------------~~~~l 55 (267)
T 3g6s_A 3 DVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKD--HELD--IVGMQEVLHN-----------------------QFQDL 55 (267)
T ss_dssp EEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHH--TTCS--EEEEESBCHH-----------------------HHHHH
T ss_pred cEEEEEEEeccCCCCccccCHHHHHHHHHHHHHH--cCCC--EEEEecCCHH-----------------------HHHHH
Confidence 3788999998665321 223344442 3567 5689998631 12334
Q ss_pred hhhccCCCceEEEeeee----ceeeEEEEEEeccccCccCcee--eceee-----cccCcccCCCCeeEEEEEE--eCeE
Q 003171 624 GKILDDGSTFERVGSRQ----LAGLLIAVWVRKNLKDYVGDVD--VAAVP-----CGFGRAIGNKGAVGLRVRV--YDRI 690 (842)
Q Consensus 624 ~~~l~~~~~y~~v~s~~----l~g~~l~vf~r~~~~~~i~~v~--~~~v~-----~G~~~~~gnKG~v~i~~~i--~~~~ 690 (842)
.+.| . .|..+.... -.|-.+.||.|++-.+.+..-. ....+ .|.. ...+++++.+.|.. .+..
T Consensus 56 ~~~l-~--~y~~~~~~~~~~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~R~~~~~~~~~~~~~~~ 131 (267)
T 3g6s_A 56 RAGL-P--EYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWD-AVCVRIATWAKFKDKATGKI 131 (267)
T ss_dssp HHHC-T--TEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTT-CSSCCEEEEEEEEETTTCCE
T ss_pred HHhc-c--CCcEEEecCCCCCcCCceeEEEEEccceEEEecccEecCCCCCcccccccc-ccCcceEEEEEEEEcCCCCE
Confidence 4445 2 344444221 2344467777765433221111 11000 1111 12467888888885 5789
Q ss_pred EEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 691 MCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 691 ~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
|+++|+||.... ...|.++.+.|.+.+
T Consensus 132 ~~v~~~Hl~~~~--~~~R~~q~~~l~~~l 158 (267)
T 3g6s_A 132 FMAVNTHFDHVG--EEARRQSALLIIRKI 158 (267)
T ss_dssp EEEEEEECCSSC--HHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCC--HHHHHHHHHHHHHHH
Confidence 999999998753 466777777777664
No 247
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.03 E-value=1.3e-05 Score=83.50 Aligned_cols=133 Identities=13% Similarity=0.025 Sum_probs=76.3
Q ss_pred EEEEEEeCCCCCCcc---------cccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhh
Q 003171 555 LAGTWNVGQGRASQD---------ALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGK 625 (842)
Q Consensus 555 ~~~twNv~~~~~~~~---------~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~ 625 (842)
-+.|||+....+... .+.++|.. .+||| |||||+... ..+.|.+
T Consensus 2 rv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~--~~~DI--v~LQEv~~~-----------------------~~~~l~~ 54 (257)
T 3l1w_A 2 KIATYNVRVDTEYDQDWQWSFRKEAVCQLINF--HDWSL--CCIQEVRPN-----------------------QVRDLKA 54 (257)
T ss_dssp EEEEEECCCCCGGGGGGSHHHHHHHHHHHHHH--HCCSE--EEEEEECHH-----------------------HHHHHHH
T ss_pred EEEEEEeccCCCCccccChHHHHHHHHHHHHH--cCCCE--EEEeCCCHH-----------------------HHHHHHh
Confidence 578999987654321 24444442 34565 689998631 1223334
Q ss_pred hccCCCceEEEeeee-ceeeEEEEEEeccccCccCceee--ce----eecccCcccCCCCeeEEEEEEe--CeEEEEEee
Q 003171 626 ILDDGSTFERVGSRQ-LAGLLIAVWVRKNLKDYVGDVDV--AA----VPCGFGRAIGNKGAVGLRVRVY--DRIMCFVNC 696 (842)
Q Consensus 626 ~l~~~~~y~~v~s~~-l~g~~l~vf~r~~~~~~i~~v~~--~~----v~~G~~~~~gnKG~v~i~~~i~--~~~~~Fv~~ 696 (842)
.| ++.|....... ..+-.+.||.|++-.+.+..-.. .. ...+. +....++++.+++... +..+.++|+
T Consensus 55 ~l--~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~g~~~~v~~~ 131 (257)
T 3l1w_A 55 YT--TFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHP-EAGCPRIALWGLFKETTQNTPFLVINV 131 (257)
T ss_dssp HS--SSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCT-TCSSCCEEEEEEEEETTCSSCEEEEEE
T ss_pred cC--CCcEEEecccCCCCCceEEEEEEcceEEEEecCeEECcCCCCcccccc-cccccceeEEEEEEEcCCCCEEEEEEe
Confidence 44 33333222211 35566788888764322211111 10 01111 2234788888999884 689999999
Q ss_pred cCcCCcchHHHHHHHHHHHHHhc
Q 003171 697 HFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 697 HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
||.+.. -..|.+++..|.+.+
T Consensus 132 Hl~~~~--~~~r~~q~~~l~~~i 152 (257)
T 3l1w_A 132 HLDHIS--AHARLAGMTVILEEL 152 (257)
T ss_dssp ECCSSC--HHHHHHHHHHHHHHT
T ss_pred CCCCCC--HHHHHHHHHHHHHHH
Confidence 998763 357888888888765
No 248
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.02 E-value=0.00037 Score=83.54 Aligned_cols=81 Identities=26% Similarity=0.437 Sum_probs=55.1
Q ss_pred CCeEEEEcC-CCCeeeeeecCCccEE-EEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCE---EEEEeCCC-EE
Q 003171 439 NGLLLQWDP-NGNRLQDFQYLPFAVQ-CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV---IKMAVGAG-YI 511 (842)
Q Consensus 439 DgtIrlWD~-~g~~l~~l~~H~~~V~-sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V---~sla~dg~-~l 511 (842)
+|+|+.||+ +|+.+-++..+..... .+...|..++.|+.||.|++||.+ |+.+-.+..+.+.+ .....+|+ ++
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 478999999 7887766655443222 456688899999999999999987 88877666553322 12245776 45
Q ss_pred EEEcCCCC
Q 003171 512 FTLANHGG 519 (842)
Q Consensus 512 ~S~S~Dgt 519 (842)
+..+..|.
T Consensus 534 ~~~~G~gg 541 (689)
T 1yiq_A 534 TFMAGWGG 541 (689)
T ss_dssp EEEECCCT
T ss_pred EEEecCCc
Confidence 55544443
No 249
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=1.1e-05 Score=86.35 Aligned_cols=134 Identities=17% Similarity=0.173 Sum_probs=76.6
Q ss_pred eEEEEEEEeCCCCCCc-----------ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHH
Q 003171 553 KILAGTWNVGQGRASQ-----------DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLD 621 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~-----------~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 621 (842)
.+.+.|||+....+.. +.+.++|.. .+|| ||||||+... ..+
T Consensus 6 ~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~--~~~D--Iv~LQEv~~~-----------------------~~~ 58 (298)
T 3mpr_A 6 SLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQY--HDFD--IFGTQECFLH-----------------------QLK 58 (298)
T ss_dssp EEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHH--TTCS--EEEEESBCHH-----------------------HHH
T ss_pred cEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHH--cCCC--EEEEeCCCHH-----------------------HHH
Confidence 4889999996554311 224444443 4667 5789998621 133
Q ss_pred HHhhhccCCCceEEEeeee----ceeeEEEEEEeccccCccCcee--ec----eeecccCcccCCCCeeEEEEEE--eCe
Q 003171 622 MIGKILDDGSTFERVGSRQ----LAGLLIAVWVRKNLKDYVGDVD--VA----AVPCGFGRAIGNKGAVGLRVRV--YDR 689 (842)
Q Consensus 622 ~l~~~l~~~~~y~~v~s~~----l~g~~l~vf~r~~~~~~i~~v~--~~----~v~~G~~~~~gnKG~v~i~~~i--~~~ 689 (842)
.|.+.|. .|..++... -.|-.+.||.|++-.+.+..-. .. ....|.. ..-+++++.+.|.. .+.
T Consensus 59 ~l~~~l~---~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~-~~~~R~~~~~~~~~~~~g~ 134 (298)
T 3mpr_A 59 DMKEALP---GYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWD-AVLPRICSWGHFKCKDTGF 134 (298)
T ss_dssp HHHHHST---TEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTT-CSSCCEEEEEEEEETTTCC
T ss_pred HHHHhCC---CCcEEEEecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCcccc-cccCceeEEEEEEEcCCCC
Confidence 4555552 354444332 2344467776665433221111 00 0011221 12367788888884 678
Q ss_pred EEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 690 IMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 690 ~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
.|+++|+||.+.. ...|.++...|.+.+
T Consensus 135 ~~~v~~~Hl~~~~--~~~R~~q~~~l~~~i 162 (298)
T 3mpr_A 135 EFLFFNLHMDHIG--KKARVESAFLVQEKM 162 (298)
T ss_dssp EEEEEEEECCSSC--HHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCC--HHHHHHHHHHHHHHH
Confidence 9999999998542 467888888887765
No 250
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.99 E-value=0.00015 Score=80.24 Aligned_cols=90 Identities=7% Similarity=-0.221 Sum_probs=63.3
Q ss_pred CEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECC
Q 003171 152 GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH----------RDGRIMCWKMN 221 (842)
Q Consensus 152 ~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs----------~DGtIrlWdl~ 221 (842)
+|.|.|.++...... + . + |..| .++++||++.||.+. .+++|.+||+.
T Consensus 47 ~vsvID~~t~~v~~~-----------------i-~-v-G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~ 104 (368)
T 1mda_H 47 ENWVSCAGCGVTLGH-----------------S-L-G-AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV 104 (368)
T ss_dssp EEEEEETTTTEEEEE-----------------E-E-E-CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred eEEEEECCCCeEEEE-----------------E-e-C-CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 788999887554321 1 1 1 2456 699999999999997 37899999999
Q ss_pred CCccCCCCCcceeEEecccC-------CcEEEEEEecCCC-EEEeeC--CCcEEE--EeCCC
Q 003171 222 ARLLDSDDGFGEVLSWQAHR-------GPVLSLCISSYGD-LWSGSE--GGGIKI--WPWEA 271 (842)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~-------~~V~slafs~dG~-L~SgS~--DgtIrv--Wd~~t 271 (842)
++ +.+.++.-+. ..-..++|||||+ |+.+.. +..|.+ +|+.+
T Consensus 105 T~--------~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 105 TF--------LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp TC--------CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CC--------CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 97 5555553220 1234789999997 776653 467888 98855
No 251
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=97.96 E-value=2.1e-05 Score=83.87 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=38.5
Q ss_pred cCCCCeeEEEEEEeCeEEEEEeecCcCCc------chHHHHHHHHHHHHHhc
Q 003171 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (842)
Q Consensus 674 ~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~------~~~~~Rn~~~~~I~~~l 719 (842)
..+||++.+++.+.+..+.++|+||.+.. .....|.++++.|.+.+
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 179 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFI 179 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999873 35677888988887764
No 252
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.96 E-value=0.00014 Score=87.25 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=70.4
Q ss_pred eEEEEECCCCc-E-EEEeC---CCeEEEEcCC-CC-eeeeeecCCccEEE-EEecCCEEEEEec-C---cEEEEEeCCC-
Q 003171 422 TEALTTSIDGM-I-WTGGA---NGLLLQWDPN-GN-RLQDFQYLPFAVQC-LCTFGSQIWVGYM-N---GIVQVLDLEG- 488 (842)
Q Consensus 422 v~al~~s~dg~-l-~Sgs~---DgtIrlWD~~-g~-~l~~l~~H~~~V~s-ls~dG~~LasGs~-D---gtIrlWD~~g- 488 (842)
...+.+||||+ | ++.+. +..|.+||++ ++ .++.+..+...+.. +.++|++|+.-+. + +.|.+||+++
T Consensus 236 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~ 315 (693)
T 3iuj_A 236 YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANP 315 (693)
T ss_dssp EEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred EEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 44567899997 4 33332 3579999994 42 56677777766655 5678886665443 3 6899999873
Q ss_pred cc--cccccccccCEEEEEeCCCEEEEEcCCC---Ceeecccc
Q 003171 489 NL--LGGWVAHSSPVIKMAVGAGYIFTLANHG---GIRGWNVT 526 (842)
Q Consensus 489 ~~--i~~l~gH~~~V~sla~dg~~l~S~S~Dg---tIrvWd~~ 526 (842)
.. .+.+..|...+.++++++++|+....++ .|++|++.
T Consensus 316 ~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 316 GPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred CccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECC
Confidence 33 4567777766557778888877655544 57888764
No 253
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.84 E-value=0.014 Score=60.41 Aligned_cols=74 Identities=9% Similarity=0.048 Sum_probs=49.1
Q ss_pred eEEEEECCCC-cEE-EEeCCCeEEEEcCCCCeeeeeecCCccEEEEEecCCEEEEEec-CcEEEEEeCC-Cccccccc
Q 003171 422 TEALTTSIDG-MIW-TGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYM-NGIVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 422 v~al~~s~dg-~l~-Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~dG~~LasGs~-DgtIrlWD~~-g~~i~~l~ 495 (842)
...+++++++ .|+ +-...+.|.++|.+|..+..+.........+++++.+|+.+.. .+.|.++|.+ |+.+.++.
T Consensus 169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 4467788864 564 4445678999999764443332222334577788887777664 6899999986 77666654
No 254
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=97.83 E-value=3.4e-05 Score=79.81 Aligned_cols=125 Identities=16% Similarity=0.095 Sum_probs=65.2
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCCceE
Q 003171 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634 (842)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~~y~ 634 (842)
-+.|||+.+.....+.+.++|.. .+||| |+|||+...... ...+.+. . ..|.
T Consensus 2 rv~t~Nv~~~~~~~~~i~~~i~~--~~~DI--v~LQE~~~~~~~-------------------~~~~~~~-~----~gy~ 53 (256)
T 2jc4_A 2 KITTWNVNSLNVRLPQVQNLLAD--NPPDI--LVLQELKLDQDK-------------------FPAAALQ-M----MGWH 53 (256)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHS--SCCSE--EEEECCCSCGGG-------------------SCHHHHH-T----TTCE
T ss_pred EEEEEEcCCcHHHHHHHHHHHHh--cCCCE--EEEEeeccchhc-------------------CCHhHHh-h----cCCe
Confidence 47899998654334556677764 46675 678998753210 0011121 1 1233
Q ss_pred EEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcc----hHHHHHH
Q 003171 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE----AVNRRNA 710 (842)
Q Consensus 635 ~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~----~~~~Rn~ 710 (842)
.+....-+.-.++||.|..+. .++. ++.+......+..+.+.+. .+.++|+|+.+... ..+.|.+
T Consensus 54 ~~~~~~~~~~G~ailsr~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~--~~~v~~~h~~~~~~~~~~~~~~r~~ 122 (256)
T 2jc4_A 54 CVWSGQKTYNGVAIVSRSVPQ----DVHF-----GLPALPDDPQRRVIAATVS--GVRVINVYCVNGEALDSPKFKYKEQ 122 (256)
T ss_dssp EEEECCSSSCCEEEEESSCCE----EEEE-----SCTTSTTCCSCCEEEEEET--TEEEEEEECCCCCSTTSHHHHHHHH
T ss_pred EEECCCCcceEEEEEECCChH----Hhee-----cCCCCccCCcCcEEEEEeC--CEEEEEEEecCCCCCCcHhHHHHHH
Confidence 332222223345678887542 2221 2222111222223444553 79999999987643 4555666
Q ss_pred HHHHHHHh
Q 003171 711 DFDHVYRT 718 (842)
Q Consensus 711 ~~~~I~~~ 718 (842)
.++.|.+.
T Consensus 123 ~~~~l~~~ 130 (256)
T 2jc4_A 123 WFAALTEF 130 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 255
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=97.77 E-value=0.00011 Score=78.44 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=37.8
Q ss_pred cCCCCeeEEEEEEeCeEEEEEeecCcCCc------chHHHHHHHHHHHHHhc
Q 003171 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (842)
Q Consensus 674 ~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~------~~~~~Rn~~~~~I~~~l 719 (842)
..+||++.+++.+.+..+.++|+||.+.. .....|.++++.|.+.+
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 179 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFI 179 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHH
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence 35789999999999999999999998873 35677888888887654
No 256
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.77 E-value=0.001 Score=73.46 Aligned_cols=101 Identities=11% Similarity=0.010 Sum_probs=63.8
Q ss_pred ECCCCcEEEEeCCCeEEEEcCCCC---eeeeee------------cCCccEEEEEecCCEEEEEec---------CcEEE
Q 003171 427 TSIDGMIWTGGANGLLLQWDPNGN---RLQDFQ------------YLPFAVQCLCTFGSQIWVGYM---------NGIVQ 482 (842)
Q Consensus 427 ~s~dg~l~Sgs~DgtIrlWD~~g~---~l~~l~------------~H~~~V~sls~dG~~LasGs~---------DgtIr 482 (842)
...++.++..+. ++|.+.|..+. .+..+. .+......+.+||++++++.. ++.+.
T Consensus 219 ~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 219 ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence 444555665556 78888888432 222221 111222467889998887643 23566
Q ss_pred EEeCC-CcccccccccccCEEEEE--eCCCE-EEEEc-CCCCeeeccccCCC
Q 003171 483 VLDLE-GNLLGGWVAHSSPVIKMA--VGAGY-IFTLA-NHGGIRGWNVTSPG 529 (842)
Q Consensus 483 lWD~~-g~~i~~l~gH~~~V~sla--~dg~~-l~S~S-~DgtIrvWd~~~~~ 529 (842)
++|++ .+.++++.... ..++|+ +||++ +++.. .+++|.++|+.+..
T Consensus 298 ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 298 SVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred EEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 99997 66777775544 356665 57874 55666 59999999987643
No 257
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.74 E-value=0.0031 Score=75.40 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=49.2
Q ss_pred CeEEEEcC-CCCeeeeeecCCccEE--EEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCE---EEEEeCCCEEE
Q 003171 440 GLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV---IKMAVGAGYIF 512 (842)
Q Consensus 440 gtIrlWD~-~g~~l~~l~~H~~~V~--sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V---~sla~dg~~l~ 512 (842)
|+|..||+ +|+.+-++.. ..++. .+..+|..++.|+.||.+++||++ |+.+.++....+.+ .....+|+..+
T Consensus 457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence 78999999 7887666543 22233 356788899999999999999987 88877765443221 11235776544
No 258
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=97.72 E-value=0.00012 Score=74.67 Aligned_cols=113 Identities=13% Similarity=0.088 Sum_probs=62.5
Q ss_pred eEEEEEEEeCCCCCCc--ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCC
Q 003171 553 KILAGTWNVGQGRASQ--DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDG 630 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~--~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~ 630 (842)
.+-+.|||+++..... +.+.++|.. .+||| |+|||+......+ . .+ .+ .+
T Consensus 7 ~lri~t~Nv~g~~~~~~~~~~~~~i~~--~~~DI--v~LQE~~~~~~~~-----------------~----~l--~~-~~ 58 (238)
T 1vyb_A 7 HITILTLNINGLNSAIKRHRLASWIKS--QDPSV--CCIQETHLTCRDT-----------------H----RL--KI-KG 58 (238)
T ss_dssp CEEEEEEECSCCCSHHHHHHHHHHHHH--HCCSE--EEEECCCCCTTSG-----------------G----GC--CC-TT
T ss_pred cceEEEEecccCCchhhHHHHHHHHHH--cCCCE--EEEecccCCCCCc-----------------h----hH--hh-CC
Confidence 3788999998765432 456777764 35664 6899986431100 0 00 11 13
Q ss_pred CceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcc
Q 003171 631 STFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (842)
Q Consensus 631 ~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~ 703 (842)
..|.......-.+-.++||.|.++...+..+. .. ...-.+.+++.+.+..+.++|+|+.....
T Consensus 59 y~~~~~~~~~~~~~Gvail~r~~~~~~~~~~~-----~~-----~~~r~i~~~~~~~~~~~~v~~~y~p~~~~ 121 (238)
T 1vyb_A 59 WRKIYQANGKQKKAGVAILVSDKTDFKPTKIK-----RD-----KEGHYIMVKGSIQQEELTILNIYAPNTGA 121 (238)
T ss_dssp CCEEEEECCSSSSCCEEEEECTTCCCEEEEEE-----EC-----TTSSEEEEEEEETTEEEEEEEEECCSSSH
T ss_pred CCeEEEccCCCCCceEEEEEeCCCCcccccee-----Ec-----CCCcEEEEEEEeCCCcEEEEEEecCCCCc
Confidence 33332222111122557888887532222211 11 11225677788888999999999987653
No 259
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=97.71 E-value=7e-05 Score=81.01 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=39.8
Q ss_pred cCCCCeeEEEEEEeCeEEEEEeecCcCCc------chHHHHHHHHHHHHHhc
Q 003171 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (842)
Q Consensus 674 ~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~------~~~~~Rn~~~~~I~~~l 719 (842)
..+||.+.+++.+.+..|.++|+||.+.. .....|.++...|.+.+
T Consensus 147 ~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 198 (317)
T 3i41_A 147 DSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFV 198 (317)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred ccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998864 34788999998887765
No 260
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.59 E-value=0.0022 Score=69.53 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=49.0
Q ss_pred CcEEEEEEecCCCEE-Eee--CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEE
Q 003171 242 GPVLSLCISSYGDLW-SGS--EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL 318 (842)
Q Consensus 242 ~~V~slafs~dG~L~-SgS--~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~la 318 (842)
..+..|+++++|+++ +.. .++.++||.+.++ ....+.... . .. + ..-..+..++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~~~~~p~~~-----------------~---~~-~-~~~~~p~gv~ 73 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-GLIPFPPQS-----------------G---NA-I-ITFDTVLGIK 73 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-EEEESCCCC-----------------S---SC-C-CCCSCEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC-CeecCCCcc-----------------c---Cc-c-cceeEeeEEE
Confidence 688999999999964 543 2344778877522 111110000 0 00 0 0123466778
Q ss_pred EcCCCCEEEEeC-------CCcEEEEEccCCcEEEEee
Q 003171 319 SDHSRAKVWSAG-------FLSFALWDARTRELLKVFN 349 (842)
Q Consensus 319 s~~~~~~v~s~s-------~~tI~lWD~~tg~~l~~l~ 349 (842)
+++++ +||.+. ...|.+||+.++++++++.
T Consensus 74 ~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~ 110 (343)
T 2qe8_A 74 SDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIY 110 (343)
T ss_dssp ECSSS-EEEEEECHHHHTSCCEEEEEETTTTEEEEEEE
T ss_pred EcCCC-cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEE
Confidence 87765 455543 3579999999998777664
No 261
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=97.52 E-value=0.00018 Score=74.24 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=68.8
Q ss_pred eEEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCCc
Q 003171 553 KILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGST 632 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~~ 632 (842)
.+-+.|||+++.+...+.+.+||.. .++| ||+|||+...... .+.. . ..
T Consensus 19 ~lri~s~Nv~~~~~~~~~l~~~i~~--~~~D--Iv~lQE~~~~~~~-----------------------~~~~-~---~g 67 (245)
T 1wdu_A 19 PYRVLQANLQRKKLATAELAIEAAT--RKAA--IALIQEPYVGGAK-----------------------SMKG-F---RG 67 (245)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHH--HTCS--EEEEESCCC-----------------------------CC-C---SS
T ss_pred ceeeeeeeccccHHHHHHHHHHHhh--cCCC--EEEEEcccccCCc-----------------------cccC-C---Cc
Confidence 3789999999765545567778874 4566 5789998642110 0000 1 12
Q ss_pred eEEEeee----eceeeEEEEEEec-cccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcchHHH
Q 003171 633 FERVGSR----QLAGLLIAVWVRK-NLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR 707 (842)
Q Consensus 633 y~~v~s~----~l~g~~l~vf~r~-~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~ 707 (842)
|...... .-.|+ .||.|+ .+. + . . +. ..-.+|.+.+.+...+..+.|+|+|+..... .+.
T Consensus 68 y~~~~~~~~~~~~~Gv--aIl~~~~~~~--~---~--~----~~-~~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~-~~~ 132 (245)
T 1wdu_A 68 VRVFQSTAQGDGTVKA--AIAVFDHDLD--V---I--Q----YP-QLTTNNIVVVGIRTRAWEITLVSYYFEPDKP-IES 132 (245)
T ss_dssp CEEEECCCCTTCCCCE--EEEECCSSCE--E---E--E----CT-TTCCSSEEEEEEECSSCEEEEEEEECCTTSC-SHH
T ss_pred ceEeccccccCCCCCe--EEEEECCCcc--e---E--E----ec-ccccCCEEEEEEEcCCCcEEEEEEEeCCCCC-HHH
Confidence 3332211 12343 556654 331 1 1 0 11 1236788889998888899999999998753 344
Q ss_pred HHHHHHHHHHh
Q 003171 708 RNADFDHVYRT 718 (842)
Q Consensus 708 Rn~~~~~I~~~ 718 (842)
+.+++..+++.
T Consensus 133 ~~~~l~~~~~~ 143 (245)
T 1wdu_A 133 YLEQIKRVERK 143 (245)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55566666553
No 262
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=97.49 E-value=0.00044 Score=71.45 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=26.0
Q ss_pred EEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccC
Q 003171 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEM 594 (842)
Q Consensus 554 i~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~ 594 (842)
+-+.|||+++.....+.+.++|.. .+||| |+|||+..
T Consensus 2 lrv~t~Nv~g~~~~~~~i~~~i~~--~~~Di--i~lQE~~~ 38 (257)
T 2voa_A 2 LKIATFNVNSIRSRLHIVIPWLKE--NKPDI--LCMQETKV 38 (257)
T ss_dssp EEEEEEECSCGGGTHHHHHHHHHH--HCCSE--EEEECCCC
T ss_pred eEEEEEecCChHHHHHHHHHHHhh--cCCCE--EEEEEeec
Confidence 568899998765444556667763 35664 68999965
No 263
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=97.48 E-value=6.7e-05 Score=79.29 Aligned_cols=129 Identities=15% Similarity=0.163 Sum_probs=63.9
Q ss_pred eEEEEEEEeCCCCCCcc-cccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCC
Q 003171 553 KILAGTWNVGQGRASQD-ALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGS 631 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~~-~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~ 631 (842)
.+-+.|||+.+...... .+.++|.. .++| ||+|||+......+ . +.+.+.. +.
T Consensus 28 ~l~v~t~Ni~~~~~~~~~~i~~~i~~--~~~D--Ii~LQE~~~~~~~~-----------------~---~~l~~~~--gy 81 (285)
T 2o3h_A 28 TLKIASWNVDGLRAWIKKKGLDWVKE--EAPD--ILCLQETKCSENKL-----------------P---AELQELP--GL 81 (285)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH--HCCS--EEEEECCCCCTTSC-----------------C---GGGGGCG--GG
T ss_pred ceEEEEEecccChhhhhhhHHHHHHh--cCCC--EEEEEEeecchhhc-----------------c---HHHHhcc--CC
Confidence 48899999986432212 26666653 4567 57899996532100 0 0111111 22
Q ss_pred ceEEEee-e-eceeeEEEEEEeccccCccCceeeceeecccCc-ccCCCCeeEEEEEEeCeEEEEEeecCcCCcc---hH
Q 003171 632 TFERVGS-R-QLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR-AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE---AV 705 (842)
Q Consensus 632 ~y~~v~s-~-~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~-~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~---~~ 705 (842)
.|..... . .-+.-.++||.|..... +.. ++.. .....|-+ +.+ ....+.++|+|+..... ..
T Consensus 82 ~~~~~~~~~~~~g~~Gvailsr~~~~~----~~~-----~~~~~~~~~~~r~-l~~--~~~~~~v~~~h~p~~~~~~~~~ 149 (285)
T 2o3h_A 82 SHQYWSAPSDKEGYSGVGLLSRQCPLK----VSY-----GIGDEEHDQEGRV-IVA--EFDSFVLVTAYVPNAGRGLVRL 149 (285)
T ss_dssp CEEEEECBC--CCSCCEEEEESSCCSE----EEE-----SCSCGGGSSBCCE-EEE--ECSSCEEEEEECCCCCGGGTTH
T ss_pred cEEEEecccCCcccceEEEEEccChHH----eee-----ccCCcccCCCCcE-EEE--EeCCEEEEEEEcCCCCCcchhH
Confidence 1222211 1 22212456788876431 211 1211 12234432 333 33589999999976643 34
Q ss_pred HHHHHHHHHHHHhc
Q 003171 706 NRRNADFDHVYRTM 719 (842)
Q Consensus 706 ~~Rn~~~~~I~~~l 719 (842)
+.|.+.++.|.+.+
T Consensus 150 ~~r~~~~~~l~~~l 163 (285)
T 2o3h_A 150 EYRQRWDEAFRKFL 163 (285)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665543
No 264
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=97.47 E-value=0.00015 Score=74.90 Aligned_cols=127 Identities=16% Similarity=0.172 Sum_probs=63.8
Q ss_pred EEEEEEEeCCCCCCcc-cccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCCc
Q 003171 554 ILAGTWNVGQGRASQD-ALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGST 632 (842)
Q Consensus 554 i~~~twNv~~~~~~~~-~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~~ 632 (842)
+-+.|||+.+...... .+.++|.. .+||| |+|||+......+ . +.+.+.. +..
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~~~~~~-----------------~---~~l~~~~--gy~ 55 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAA--SGADI--VCVQELKAQEADL-----------------S---ADMKNPH--GMH 55 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHH--TTCSE--EEEECCCCCGGGC-----------------C---HHHHSGG--GCE
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHh--cCCCE--EEEEEecchhhcc-----------------C---hhhcccc--CCe
Confidence 5688999986433222 36667663 46775 6789997532100 0 1121111 233
Q ss_pred eEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCc-ccCCCCeeEEEEEEeCeEEEEEeecCcCCcch---HHHH
Q 003171 633 FERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR-AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA---VNRR 708 (842)
Q Consensus 633 y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~-~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~---~~~R 708 (842)
|.......-+.-.++||.|..+. .+.. ++.. ....+|. .+.+.+ ..+.++|+||.+.... ...|
T Consensus 56 ~~~~~~~~~~~~G~ailsr~~~~----~~~~-----~~~~~~~~~~~r-~~~~~~--~~~~v~~~h~~~~~~~~~r~~~~ 123 (259)
T 2jc5_A 56 GHWHCAEKRGYSGVAVYSKRKPD----NVQI-----GMGIEEFDREGR-FVRCDF--GRLSVISLYLPSGSSAEERQQVK 123 (259)
T ss_dssp EEEECCSSTTCCCEEEEESSCCS----EEEE-----SCSCHHHHTTCC-EEEEEE--TTEEEEEEECCCCTTCHHHHHHH
T ss_pred EEEeccCCCCcceEEEEEecCce----eEEe-----CCCCCccCCCCe-EEEEEc--CCEEEEEEeccCCCCCcHHHHHH
Confidence 32221122222346778888653 2221 2211 1123443 344444 4799999999987543 2233
Q ss_pred HHHHHHHHHh
Q 003171 709 NADFDHVYRT 718 (842)
Q Consensus 709 n~~~~~I~~~ 718 (842)
.+.++.|.+.
T Consensus 124 ~~~~~~l~~~ 133 (259)
T 2jc5_A 124 YRFLDAFYPM 133 (259)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445555444
No 265
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.45 E-value=0.065 Score=55.27 Aligned_cols=104 Identities=9% Similarity=-0.042 Sum_probs=62.7
Q ss_pred EEEEECC-CCcEEEEeC---CCeEEEEcCCCCeeeeee-cCCccEEEEEe--cCCEEEEEec-CcEEEEEeCCCcccccc
Q 003171 423 EALTTSI-DGMIWTGGA---NGLLLQWDPNGNRLQDFQ-YLPFAVQCLCT--FGSQIWVGYM-NGIVQVLDLEGNLLGGW 494 (842)
Q Consensus 423 ~al~~s~-dg~l~Sgs~---DgtIrlWD~~g~~l~~l~-~H~~~V~sls~--dG~~LasGs~-DgtIrlWD~~g~~i~~l 494 (842)
..++++| +|.|+.+.. .+.|..++.+|+..+.+. ........++. ++.+|+.+.. .+.|.++|..+.....+
T Consensus 125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 204 (267)
T 1npe_A 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV 204 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE
Confidence 4567777 466655543 367888888776555443 22234455654 5777776664 68999999986432222
Q ss_pred cccccCEEEEEeCCCEEEEEc-CCCCeeecccc
Q 003171 495 VAHSSPVIKMAVGAGYIFTLA-NHGGIRGWNVT 526 (842)
Q Consensus 495 ~gH~~~V~sla~dg~~l~S~S-~DgtIrvWd~~ 526 (842)
.........|+.+++.++.+. ..+.|.+.+..
T Consensus 205 ~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 205 LEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EECCCSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred ecCCCCceEEEEeCCEEEEEECCCCeEEEEeCC
Confidence 111223456777777777655 45677777654
No 266
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.33 E-value=0.014 Score=65.64 Aligned_cols=116 Identities=4% Similarity=-0.084 Sum_probs=72.7
Q ss_pred CCCCEEEEEeCC-----CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee----------CCCcE
Q 003171 201 EASGVVWSGHRD-----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------EGGGI 264 (842)
Q Consensus 201 pdg~~LaSGs~D-----GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS----------~DgtI 264 (842)
++++.++..... ++|-+.|..+. +.+.++.--..+ .|++||||+ |+.+. .+++|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~--------~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTG--------RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTT--------EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCC--------EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence 466777766653 68999999986 555555433446 799999998 66544 47799
Q ss_pred EEEeCCCccceeecCCC-ceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC---CCcEEEEEcc
Q 003171 265 KIWPWEAIEKALSLKPE-ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDAR 340 (842)
Q Consensus 265 rvWd~~t~~~~l~~~~~-~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s---~~tI~lWD~~ 340 (842)
-++|..+.+..-++... ... ... ...-..+++++++.+++.+. .++|.+.|+.
T Consensus 152 sviD~~t~~vv~~I~v~g~~r-----------------~~~------g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~ 208 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPR-----------------FLV------GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLE 208 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCC-----------------CCB------SCCGGGSEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred EEEECCCCcEEEEEECCCccc-----------------ccc------CCCcceEEEcCCCCEEEEEecCCCCeEEEEECC
Confidence 99999775422111100 000 000 00111355677788777764 3579999999
Q ss_pred CCcEEEEee
Q 003171 341 TRELLKVFN 349 (842)
Q Consensus 341 tg~~l~~l~ 349 (842)
+++.++++.
T Consensus 209 t~kvv~~I~ 217 (426)
T 3c75_H 209 GKTFDRMLD 217 (426)
T ss_dssp TTEEEEEEE
T ss_pred CCeEEEEEE
Confidence 999877654
No 267
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=97.21 E-value=0.00026 Score=76.44 Aligned_cols=129 Identities=14% Similarity=0.146 Sum_probs=62.4
Q ss_pred eEEEEEEEeCCCCCCc-ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCC
Q 003171 553 KILAGTWNVGQGRASQ-DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGS 631 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~-~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~ 631 (842)
.+-+.|||+.+..... ..+.++|.. .++|| |+|||+...... ....+.+.. ++
T Consensus 61 ~lrv~t~Nv~g~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~~~~~--------------------~~~~l~~~~--gy 114 (318)
T 1hd7_A 61 TLKICSWNVDGLRAWIKKKGLDWVKE--EAPDI--LCLQETKCSENK--------------------LPAELQELP--GL 114 (318)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH--HCCSE--EEEECCCCCC---------------------------------CC
T ss_pred ceEEEEEecCcchhhhhhhHHHHHHh--hCCCE--EEEEEccCchhh--------------------ccHHHHhcC--CC
Confidence 4789999998643211 226666653 45665 789998653210 001111111 23
Q ss_pred ceEEEee-e-eceeeEEEEEEeccccCccCceeeceeecccCc-ccCCCCeeEEEEEEeCeEEEEEeecCcCCcc---hH
Q 003171 632 TFERVGS-R-QLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR-AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE---AV 705 (842)
Q Consensus 632 ~y~~v~s-~-~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~-~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~---~~ 705 (842)
.|..... . .-+.-.++||.|..+.. +.. ++.. .....|- .+...+ ..|.++|+|+..... ..
T Consensus 115 ~~~~~~~~~~~~g~~Gvailsr~~~~~----~~~-----~~~~~~~~~~~r-~l~~~~--~~~~v~~vh~p~~~~~~~~~ 182 (318)
T 1hd7_A 115 SHQYWSAPSDKEGYSGVGLLSRQCPLK----VSY-----GIGDEEHDQEGR-VIVAEF--DSFVLVTAYVPNAGRGLVRL 182 (318)
T ss_dssp CEEEEECC-----CCCEEEEESSCCSE----EEE-----SCSCGGGSSSSC-EEEEEC--SSCEEEEEECCCCCGGGTTH
T ss_pred ceEEEecCCCCCccceEEEEEcCCcee----EEe-----cCCCcccCCCCc-EEEEEc--CCEEEEEEEcCCCCCccccH
Confidence 2222221 1 22212456788876431 211 2211 1223443 233333 579999999976643 23
Q ss_pred HHHHHHHHHHHHhc
Q 003171 706 NRRNADFDHVYRTM 719 (842)
Q Consensus 706 ~~Rn~~~~~I~~~l 719 (842)
+.|.+.++.|.+.+
T Consensus 183 ~~r~~~~~~l~~~l 196 (318)
T 1hd7_A 183 EYRQRWDEAFRKFL 196 (318)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665543
No 268
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=97.19 E-value=0.00071 Score=76.99 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=26.3
Q ss_pred eEEEEEEEeCCCCCCc----ccccccccCCCCCceEEEEEeecccC
Q 003171 553 KILAGTWNVGQGRASQ----DALISWLGSAASDVGIVVVGLQEVEM 594 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~----~~l~~~l~~~~~~~di~viglQE~~~ 594 (842)
.|-+.||||++..... +.+.+||.. .++| ||||||+..
T Consensus 149 ~LKI~TwNVnGl~~~~kr~~~~i~~~I~~--~~pD--IVcLQEtk~ 190 (467)
T 2j63_A 149 MYKFITWNVAGLRGLLKKNASALRAFMEA--EKPD--VLCLQETKL 190 (467)
T ss_dssp EEEEEEEECSCHHHHHHHCTTHHHHHHHH--HCCS--EEEEECCCC
T ss_pred CeEEEEEEcCCCcccccccHHHHHHHHHH--cCCC--EEEEEeccc
Confidence 4789999998743211 357778874 4567 578999865
No 269
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.13 E-value=0.028 Score=58.56 Aligned_cols=172 Identities=15% Similarity=0.138 Sum_probs=102.1
Q ss_pred CcEEEEEEecCCCEE-EeeCCC--cEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEE
Q 003171 242 GPVLSLCISSYGDLW-SGSEGG--GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL 318 (842)
Q Consensus 242 ~~V~slafs~dG~L~-SgS~Dg--tIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~la 318 (842)
.-...|.|+ ++.|+ |++.+| .|++.|+++++...+..... ..-..-++
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~----------------------------~~FgeGit 93 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK----------------------------RYFGEGIS 93 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT----------------------------TCCEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC----------------------------ccceeEEE
Confidence 346788998 67775 777766 99999998865322211100 00011122
Q ss_pred EcCCCCEEEEeCC--CcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCc
Q 003171 319 SDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR 396 (842)
Q Consensus 319 s~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~ 396 (842)
. .+.+||...+ +.+.++|..|.+.++++...+.- +
T Consensus 94 ~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG----------------------------------~------- 130 (262)
T 3nol_A 94 D--WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG----------------------------------W------- 130 (262)
T ss_dssp E--ETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC----------------------------------C-------
T ss_pred E--eCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc----------------------------------e-------
Confidence 2 2557887774 57999999999988877532100 0
Q ss_pred ceEEecCCcEEEEeecCccccCCCceEEEEECCCC-cEEEEeCCCeEEEEcC-CCCeeeeeec--CCcc---EEEEEe-c
Q 003171 397 NAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQY--LPFA---VQCLCT-F 468 (842)
Q Consensus 397 ~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~l~Sgs~DgtIrlWD~-~g~~l~~l~~--H~~~---V~sls~-d 468 (842)
.++ +|| .|+....++.|.++|. +.+.+.++.. +..+ ++-+.. +
T Consensus 131 ---------------------------glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~ 181 (262)
T 3nol_A 131 ---------------------------GLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVD 181 (262)
T ss_dssp ---------------------------CEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEET
T ss_pred ---------------------------EEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEEC
Confidence 011 223 3665555677999999 6787777653 2223 344544 5
Q ss_pred CCEEEEEe-cCcEEEEEeCC-Cccccccccc------------ccCEEEEEeC--CCEEEEEc
Q 003171 469 GSQIWVGY-MNGIVQVLDLE-GNLLGGWVAH------------SSPVIKMAVG--AGYIFTLA 515 (842)
Q Consensus 469 G~~LasGs-~DgtIrlWD~~-g~~i~~l~gH------------~~~V~sla~d--g~~l~S~S 515 (842)
| +||+.. .+..|.+.|.+ |+.+..+... .+..+.||.| .+.++-.+
T Consensus 182 G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 182 G-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp T-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred C-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 5 677666 58899999986 7655444321 1345778864 45555444
No 270
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.13 E-value=0.059 Score=56.43 Aligned_cols=186 Identities=13% Similarity=0.118 Sum_probs=111.9
Q ss_pred cEEEEEEecCCCEEEee-C--CCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEE
Q 003171 243 PVLSLCISSYGDLWSGS-E--GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (842)
Q Consensus 243 ~V~slafs~dG~L~SgS-~--DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las 319 (842)
....|+|++||.|+.++ . ++.|++.|+.+++-.-+.... . ......++.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-----------------~-----------~~fgeGi~~ 73 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD-----------------D-----------SYFGEGLTL 73 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC-----------------T-----------TCCEEEEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC-----------------C-----------CcceEEEEE
Confidence 46799999998886443 2 689999999876532211100 0 001112333
Q ss_pred cCCCCEEEEeCC--CcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcc
Q 003171 320 DHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN 397 (842)
Q Consensus 320 ~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~ 397 (842)
. +.+||.+.+ +.+.++|..|.+.+.++... .. .
T Consensus 74 ~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~----------------------------~-------------- 108 (266)
T 2iwa_A 74 L--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK----------------------------D-------------- 108 (266)
T ss_dssp E--TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS----------------------------S--------------
T ss_pred e--CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC----------------------------C--------------
Confidence 2 457777774 58999999999887766421 00 0
Q ss_pred eEEecCCcEEEEeecCccccCCCceEEEEECCCC-cEEEEeCCCeEEEEcC-CCCeeeeeec--CCc---cEEEEEecCC
Q 003171 398 AIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQY--LPF---AVQCLCTFGS 470 (842)
Q Consensus 398 ~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~l~Sgs~DgtIrlWD~-~g~~l~~l~~--H~~---~V~sls~dG~ 470 (842)
+ ..+++|| +++.+..+++|.++|. +.+.++++.- +.. .++.+.+.+.
T Consensus 109 -------g-------------------~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg 162 (266)
T 2iwa_A 109 -------G-------------------WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYING 162 (266)
T ss_dssp -------C-------------------CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT
T ss_pred -------e-------------------EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECC
Confidence 0 0012233 3666666789999999 5677776652 112 2445544334
Q ss_pred EEEEEe-cCcEEEEEeCC-Cccccccccc-----------c--cCEEEEEe--CCCE-EEEEcCCCCeeeccccC
Q 003171 471 QIWVGY-MNGIVQVLDLE-GNLLGGWVAH-----------S--SPVIKMAV--GAGY-IFTLANHGGIRGWNVTS 527 (842)
Q Consensus 471 ~LasGs-~DgtIrlWD~~-g~~i~~l~gH-----------~--~~V~sla~--dg~~-l~S~S~DgtIrvWd~~~ 527 (842)
+||+.. .++.|.+-|++ ++.+..+... . ...+.|+. +++. ++++.....+.+-++..
T Consensus 163 ~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 163 EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 677666 47899999996 7765555321 1 34577875 4554 55777777777777654
No 271
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=96.92 E-value=0.00063 Score=70.50 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=27.3
Q ss_pred EEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeeccc
Q 003171 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVE 593 (842)
Q Consensus 554 i~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~ 593 (842)
+-+.||||++.+...+.|.+||.. .++|| ++|||..
T Consensus 8 mki~s~Nvn~~r~~~~~l~~~l~~--~~~DI--l~LQEt~ 43 (240)
T 2ei9_A 8 LRIGQINLGGAEDATRELPSIARD--LGLDI--VLVQEQY 43 (240)
T ss_dssp EEEEEEECTTCHHHHHTHHHHHHH--HTCSE--EEEESCC
T ss_pred ceEEEEecCccHHHHHHHHHHHHH--cCCCE--EEeecce
Confidence 678999999876655568889885 45665 5789974
No 272
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.92 E-value=0.15 Score=60.60 Aligned_cols=77 Identities=25% Similarity=0.427 Sum_probs=50.8
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccE-EEEEecCCEEEEEecCcEEEEEeCC-Ccccccccccc----cCEEEEEeCCC-
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAV-QCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS----SPVIKMAVGAG- 509 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V-~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~----~~V~sla~dg~- 509 (842)
.+|.|.-||+ +|+.+-.+..+.... ..+...|..|+.|+.|+.|++||.+ |+.+..+.... .++.- ..+|+
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~-~~~G~~ 514 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF-ELAGRQ 514 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-EETTEE
T ss_pred ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEE-EECCEE
Confidence 4588999999 787765554332221 2456688899999999999999987 88776665443 23322 35666
Q ss_pred EEEEEc
Q 003171 510 YIFTLA 515 (842)
Q Consensus 510 ~l~S~S 515 (842)
+++.++
T Consensus 515 yva~~~ 520 (668)
T 1kv9_A 515 YVAIMA 520 (668)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 444333
No 273
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=96.87 E-value=0.00051 Score=71.72 Aligned_cols=38 Identities=26% Similarity=0.490 Sum_probs=25.5
Q ss_pred EEEEEEEeCCCCCCcc-cccccccCCCCCceEEEEEeecccCc
Q 003171 554 ILAGTWNVGQGRASQD-ALISWLGSAASDVGIVVVGLQEVEMG 595 (842)
Q Consensus 554 i~~~twNv~~~~~~~~-~l~~~l~~~~~~~di~viglQE~~~~ 595 (842)
+-+.|||+++...... .+.+||.. .++|| |+|||+...
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~--~~~DI--v~LQEt~~~ 42 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFME--EKPDI--LCLQEIKAA 42 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHH--HCCSE--EEEECCCSC
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHh--cCCCE--EEEEecccc
Confidence 6788999987543222 47777764 35564 678998653
No 274
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.77 E-value=0.038 Score=65.80 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=37.0
Q ss_pred CcEEEEEeCC-CcccccccccccCE-EEEEeCCCEEEEEcCCCCeeeccccCCCCC
Q 003171 478 NGIVQVLDLE-GNLLGGWVAHSSPV-IKMAVGAGYIFTLANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V-~sla~dg~~l~S~S~DgtIrvWd~~~~~~~ 531 (842)
+|.|..||+. |+.+=....+.... ..+...+..++.++.|+.++.||..+...+
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 5899999986 66543333222221 235567889999999999999998765443
No 275
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=96.76 E-value=0.0026 Score=66.30 Aligned_cols=70 Identities=17% Similarity=0.054 Sum_probs=38.5
Q ss_pred CCceEEEeeeec----eeeEEEEEEeccccCccCceeeceeecc-c--CcccCCCCeeEEEEEEe---CeEEEEEeecCc
Q 003171 630 GSTFERVGSRQL----AGLLIAVWVRKNLKDYVGDVDVAAVPCG-F--GRAIGNKGAVGLRVRVY---DRIMCFVNCHFA 699 (842)
Q Consensus 630 ~~~y~~v~s~~l----~g~~l~vf~r~~~~~~i~~v~~~~v~~G-~--~~~~gnKG~v~i~~~i~---~~~~~Fv~~HLa 699 (842)
+..|..+.+... .+....++.|++....+ +.....-+ . +...-......+.|... +..|.++|+||.
T Consensus 60 ~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~---~~~~~~~~~~~~~~~~~~R~p~~~~~~~~~~~g~~~~vi~~Hl~ 136 (260)
T 2a40_B 60 PNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVL---DTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSA 136 (260)
T ss_dssp TTSCEEEECCCBCSSSCCBEEEEEECTTTCEEE---EEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCC
T ss_pred CCCcEEEEcccCCCCCCcEEEEEEEcCceeEec---CceeccCCCcCCCCCceeeCCEEEEEEeCCCCCceEEEEEecCC
Confidence 345766665544 34566677777643221 11111111 0 01101356677788765 579999999999
Q ss_pred CCc
Q 003171 700 AHL 702 (842)
Q Consensus 700 a~~ 702 (842)
+..
T Consensus 137 ~~~ 139 (260)
T 2a40_B 137 PSD 139 (260)
T ss_dssp GGG
T ss_pred CCC
Confidence 653
No 276
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.73 E-value=0.18 Score=51.86 Aligned_cols=177 Identities=13% Similarity=0.108 Sum_probs=104.1
Q ss_pred ccC--CcEEEEEEecCCCEE-EeeCC--CcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCC
Q 003171 239 AHR--GPVLSLCISSYGDLW-SGSEG--GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSD 313 (842)
Q Consensus 239 gH~--~~V~slafs~dG~L~-SgS~D--gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~ 313 (842)
.|. .-+..|.|++ +.|+ |.+.+ ..|++.|+++++...+..... . .-
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-----------------~-----------~f 66 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-----------------P-----------YF 66 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-----------------T-----------CC
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-----------------C-----------cc
Confidence 553 4578999987 6775 66665 499999998865322211000 0 00
Q ss_pred EEEEEEcCCCCEEEEeCC--CcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeE
Q 003171 314 IKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (842)
Q Consensus 314 v~~las~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~ 391 (842)
..-++. .+.+||...+ +.+.++|..|.+.++++...+.-
T Consensus 67 geGi~~--~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G------------------------------------- 107 (243)
T 3mbr_X 67 GAGIVA--WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG------------------------------------- 107 (243)
T ss_dssp EEEEEE--ETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-------------------------------------
T ss_pred eeEEEE--eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-------------------------------------
Confidence 111222 2467777774 57999999999988877531100
Q ss_pred eecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeec--CCc---cEEEE
Q 003171 392 FQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY--LPF---AVQCL 465 (842)
Q Consensus 392 ~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~--H~~---~V~sl 465 (842)
..++. .++.|+.+..++.|.++|. +.+.++++.- +.. .++-+
T Consensus 108 -------------------------------wglt~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 108 -------------------------------WALTS-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp -------------------------------CEEEE-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred -------------------------------eEEee-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 01111 1234666666788999999 6777777653 222 34455
Q ss_pred EecCCEEEEEe-cCcEEEEEeCC-Cccccccccc------------c-cCEEEEEeC--CCEEEEEc
Q 003171 466 CTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAH------------S-SPVIKMAVG--AGYIFTLA 515 (842)
Q Consensus 466 s~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~gH------------~-~~V~sla~d--g~~l~S~S 515 (842)
...+.+|++.. .+..|.+-|.+ |+.+..+... . +..+.||.| ++.++-.+
T Consensus 156 e~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 156 EWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 44444566665 57799999986 7654443311 1 345778864 45555443
No 277
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.73 E-value=0.16 Score=59.51 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=41.7
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcceeEEec--ccC--CcEEEEEEecCCCEEEee------CCCcEEEEeCCCccce
Q 003171 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--AHR--GPVLSLCISSYGDLWSGS------EGGGIKIWPWEAIEKA 275 (842)
Q Consensus 206 LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~--gH~--~~V~slafs~dG~L~SgS------~DgtIrvWd~~t~~~~ 275 (842)
|+.++.|+.+...|..+| +.+-+.. .+. ..+++--.-.+|.++.++ .++.|+.+|..+++..
T Consensus 124 V~v~t~dg~l~AlDa~TG--------~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETG--------ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp EEEECTTSEEEEEETTTC--------CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred EEEEcCCCEEEEEECCCC--------CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEE
Confidence 888999999999999988 4432221 111 012211111256776655 3899999999988766
Q ss_pred eecC
Q 003171 276 LSLK 279 (842)
Q Consensus 276 l~~~ 279 (842)
.++.
T Consensus 196 W~~~ 199 (599)
T 1w6s_A 196 WRAY 199 (599)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5543
No 278
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.72 E-value=0.11 Score=60.73 Aligned_cols=68 Identities=7% Similarity=0.089 Sum_probs=43.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe--cccCC--cEEEEEEecCCCEEEeeC------CCcEEEEeCCCc
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRG--PVLSLCISSYGDLWSGSE------GGGIKIWPWEAI 272 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l--~gH~~--~V~slafs~dG~L~SgS~------DgtIrvWd~~t~ 272 (842)
++.|+.++.|+.+..+|..+| +.+-+. .+|.. .+++--.-.++.++.++. ++.|..+|..++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG--------~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG 186 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTG--------KINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTG 186 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTC--------CEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred CCEEEEEeCCCEEEEEECCCC--------CEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCC
Confidence 578889999999999999988 443322 22211 122111112567766654 799999999988
Q ss_pred cceeec
Q 003171 273 EKALSL 278 (842)
Q Consensus 273 ~~~l~~ 278 (842)
+...++
T Consensus 187 ~~~W~~ 192 (571)
T 2ad6_A 187 ELKWRA 192 (571)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 766554
No 279
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.55 E-value=0.024 Score=59.42 Aligned_cols=109 Identities=7% Similarity=0.017 Sum_probs=79.1
Q ss_pred eEEEEECCCCcEEEEeC---CCeEEEEcC-CCCeeeeeecCC-ccEEEEEecCCEEEEEec-CcEEEEEeCC-Ccccccc
Q 003171 422 TEALTTSIDGMIWTGGA---NGLLLQWDP-NGNRLQDFQYLP-FAVQCLCTFGSQIWVGYM-NGIVQVLDLE-GNLLGGW 494 (842)
Q Consensus 422 v~al~~s~dg~l~Sgs~---DgtIrlWD~-~g~~l~~l~~H~-~~V~sls~dG~~LasGs~-DgtIrlWD~~-g~~i~~l 494 (842)
...+++++||.|+.++. +++|++.|+ +|+.++++.... .....++++|++||.+.. +++|.++|.+ .+.+.++
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence 45688999889887664 578999999 799888875322 233467788988888774 8899999987 5667766
Q ss_pred cccccCEEEEEeCCCEEEEEcCCCCeeeccccCCCC
Q 003171 495 VAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 495 ~gH~~~V~sla~dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
..-...=+.+++||+.++.+..++.|.+.|..+...
T Consensus 103 ~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v 138 (266)
T 2iwa_A 103 THQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKL 138 (266)
T ss_dssp ECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCE
T ss_pred ECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcE
Confidence 421122256888988877666788899999766443
No 280
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.53 E-value=0.15 Score=54.22 Aligned_cols=103 Identities=13% Similarity=0.072 Sum_probs=62.9
Q ss_pred eEEEEECCCCc-EEEE-eCCCeEEEEcCCCCe---eeeeecCCccEEEEEec--CCEEEEEec-----------CcEEEE
Q 003171 422 TEALTTSIDGM-IWTG-GANGLLLQWDPNGNR---LQDFQYLPFAVQCLCTF--GSQIWVGYM-----------NGIVQV 483 (842)
Q Consensus 422 v~al~~s~dg~-l~Sg-s~DgtIrlWD~~g~~---l~~l~~H~~~V~sls~d--G~~LasGs~-----------DgtIrl 483 (842)
...+++++||. |+.+ +.++.|.++++.+.. .+.+..... ...++.| |. ||++.. .+.|..
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~ 264 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIK 264 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEE
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEE
Confidence 34688999986 7665 456789999986421 222221122 4556654 55 555543 367999
Q ss_pred EeCCCcccccccccc----cCEEEEEe-CCCEEEEEcCCCCeeecccc
Q 003171 484 LDLEGNLLGGWVAHS----SPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 484 WD~~g~~i~~l~gH~----~~V~sla~-dg~~l~S~S~DgtIrvWd~~ 526 (842)
+|.+|+.+..+.... ..+.+++. +++..++....+.|.++++.
T Consensus 265 ~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 265 FDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred ECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 998888776665432 34566654 44444555567788888754
No 281
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.49 E-value=1.2 Score=48.96 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=61.3
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 003171 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~ 222 (842)
.|+.+..+.|+..++...... ..+.+...+..+++++. +.+.|+-...+.|..+++++
T Consensus 89 ~l~~~~~~~I~~i~~~~~~~~---------------------~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g 147 (386)
T 3v65_B 89 VLLFANRIDIRQVLPHRSEYT---------------------LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNG 147 (386)
T ss_dssp EEEEECBSCEEEECTTSCCCE---------------------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eeEeecCccceeeccCCCcEE---------------------EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 455566778888887542111 11112345788999975 55666766778999999987
Q ss_pred CccCCCCCcceeEEecccCCcEEEEEEecC-CCE-EEeeCCCcEEEEeCCC
Q 003171 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPWEA 271 (842)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd~~t 271 (842)
+ .....+.........|++++. |.| |+-+..+.|.+.++++
T Consensus 148 ~--------~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg 190 (386)
T 3v65_B 148 S--------NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 190 (386)
T ss_dssp C--------CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred C--------CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence 5 211112222234467899975 455 5766777888877754
No 282
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.48 E-value=0.17 Score=52.68 Aligned_cols=158 Identities=11% Similarity=0.131 Sum_probs=92.5
Q ss_pred ceeEEEEecCCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE-E
Q 003171 133 CFLRTIVCTEEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS-G 209 (842)
Q Consensus 133 ~~~~~l~~~~~~l~~~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS-G 209 (842)
.|-+-|..+++.||.+ .++.|++.|++++..... . .+..+|- -.++++ ++.||. .
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~---------~--l~~~~Fg---------eGit~~--g~~Ly~lt 112 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWM---------E--RLGNIFA---------EGLASD--GERLYQLT 112 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEE---------E--ECTTCCE---------EEEEEC--SSCEEEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeE---------E--CCCCcce---------eEEEEe--CCEEEEEE
Confidence 4667888888999984 467899999988654321 0 1111121 124443 444444 4
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
..++.+.++|.++. +.+.++.--.. ...+++||+ |+.+..++.|.++|.++.+..-+...
T Consensus 113 w~~~~v~V~D~~Tl--------~~~~ti~~~~e---GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V-------- 173 (268)
T 3nok_A 113 WTEGLLFTWSGMPP--------QRERTTRYSGE---GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV-------- 173 (268)
T ss_dssp SSSCEEEEEETTTT--------EEEEEEECSSC---CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC--------
T ss_pred ccCCEEEEEECCcC--------cEEEEEeCCCc---eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe--------
Confidence 57889999999986 56666542111 123345665 77655688999999877432211100
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEccCCcEEEEee
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFN 349 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~ 349 (842)
...+. +.....-+... +++||...+ ..|.+-|.+||+++..+.
T Consensus 174 -------------~~~g~---~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 174 -------------KLRGQ---PVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp -------------EETTE---ECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred -------------CCCCc---ccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence 00000 01122223333 336887664 579999999999988764
No 283
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.34 E-value=0.15 Score=53.10 Aligned_cols=160 Identities=9% Similarity=0.124 Sum_probs=92.9
Q ss_pred ceeEEEEecCCEEEEec--CC--CEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE
Q 003171 133 CFLRTIVCTEEQLWAGG--EN--GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 133 ~~~~~l~~~~~~l~~~~--D~--~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS 208 (842)
.|-+-|..+++.||.|+ ++ .|++.|++++..... -..+..+|- -.+++ +++.||.
T Consensus 43 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~----------~~l~~~~Fg---------eGit~--~g~~ly~ 101 (262)
T 3nol_A 43 AFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQ----------IELGKRYFG---------EGISD--WKDKIVG 101 (262)
T ss_dssp CEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEE----------EECCTTCCE---------EEEEE--ETTEEEE
T ss_pred cccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEE----------EecCCccce---------eEEEE--eCCEEEE
Confidence 46777887877999854 43 899999988654321 000111121 11333 3556666
Q ss_pred Ee-CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeee
Q 003171 209 GH-RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (842)
Q Consensus 209 Gs-~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~ 286 (842)
.. .++.+.++|.++. +.+.++.--. ....+++||+ |+....++.|.++|.++.+..-+...
T Consensus 102 ltw~~~~v~v~D~~t~--------~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V------ 164 (262)
T 3nol_A 102 LTWKNGLGFVWNIRNL--------RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV------ 164 (262)
T ss_dssp EESSSSEEEEEETTTC--------CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC------
T ss_pred EEeeCCEEEEEECccC--------cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe------
Confidence 65 5789999999886 5565554211 2234456675 77655577899999877432111100
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEccCCcEEEEeec
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNI 350 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~~ 350 (842)
...+. +.....-+... +++||...+ ..|.+.|.+||+++.++..
T Consensus 165 ---------------~~~g~---~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 165 ---------------TAHGE---ELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp ---------------EETTE---ECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred ---------------ccCCc---cccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 00000 01112223333 347887764 5799999999999887753
No 284
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.34 E-value=1.3 Score=46.46 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=47.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeC--CC-cEEEEe
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE--GG-GIKIWP 268 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~--Dg-tIrvWd 268 (842)
.....++++++|+++++-..++.|..||.++. ....+. -.+...+|+++++|+|+.+.. ++ .|..++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---------~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---------QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---------EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---------eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence 35667999999998888778899999988763 222222 234688999999999765542 22 344445
Q ss_pred CCC
Q 003171 269 WEA 271 (842)
Q Consensus 269 ~~t 271 (842)
..+
T Consensus 102 ~~~ 104 (306)
T 2p4o_A 102 KSD 104 (306)
T ss_dssp CTT
T ss_pred CCC
Confidence 444
No 285
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.28 E-value=1.5 Score=46.51 Aligned_cols=102 Identities=13% Similarity=0.133 Sum_probs=60.3
Q ss_pred EEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 003171 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNAR 223 (842)
Q Consensus 145 l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g 223 (842)
|+.+..+.|++.|++..... ..+.....+..+++++++ .+.|+-...+.|..+++++.
T Consensus 4 ll~~~~~~I~~i~~~~~~~~---------------------~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~ 62 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDRSEYT---------------------SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA 62 (316)
T ss_dssp EEEECBSSEEEEETTSCCCE---------------------EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---
T ss_pred EEEECCCeEEEEECCCcceE---------------------ehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCC
Confidence 55566778999998753211 011113356789999865 56667667789999998761
Q ss_pred ccCCCCCcceeEEecccCCcEEEEEEecC-CCE-EEeeCCCcEEEEeCCC
Q 003171 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPWEA 271 (842)
Q Consensus 224 ~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd~~t 271 (842)
. ........+...-....+|++++. +.| |+-...+.|.+.++++
T Consensus 63 ~----~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 63 H----GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp ---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred C----CCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 0 000111112222234578999974 456 5667788999988764
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.27 E-value=1.5 Score=46.65 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=63.2
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 003171 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~ 222 (842)
.|+.+....|+..|++.... +...+. .. ...+.+|++++. +.+.|+-...+.|..+++++
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~---------------~~~~~~-~~---~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g 66 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKE---------------NATIVV-GG---LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 66 (318)
T ss_dssp EEEEECEEEEEEEETTCTTS---------------CCEEEE-EE---EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTS
T ss_pred EEEEEccCeEEEEECCCCce---------------EEEEEe-cC---CCccEEEEEEeCCCEEEEEECCCCcEEEEEccC
Confidence 35556667899999865321 001111 11 225678999984 56777777788999999887
Q ss_pred CccCCCCCcceeEEecccCCcEEEEEEecC-CCE-EEeeCCCcEEEEeCCC
Q 003171 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPWEA 271 (842)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd~~t 271 (842)
+. .....+..--....+|++++. |.| |+-+..+.|.+.++++
T Consensus 67 ~~-------~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 110 (318)
T 3sov_A 67 TE-------SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 110 (318)
T ss_dssp SS-------CCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CC-------ceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC
Confidence 51 111111122234568999974 555 5767778999998865
No 287
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=96.26 E-value=0.9 Score=50.95 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=48.4
Q ss_pred EEEEcCCCCEEEEEeCC------CcEEEEECCCCccCCCCCcceeEEecc--cC-CcEEEEEEecCCC-EEEee------
Q 003171 196 CMVGDEASGVVWSGHRD------GRIMCWKMNARLLDSDDGFGEVLSWQA--HR-GPVLSLCISSYGD-LWSGS------ 259 (842)
Q Consensus 196 ~la~dpdg~~LaSGs~D------GtIrlWdl~~g~~~~~~~~~~~~~l~g--H~-~~V~slafs~dG~-L~SgS------ 259 (842)
-+.+.|+| +++|...+ |.|-+.|.++. +.+.+|.- +. .--..+.|+|+++ ++|..
T Consensus 142 ~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~--------~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~ 212 (462)
T 2ece_A 142 TVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF--------EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNT 212 (462)
T ss_dssp EEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC--------CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHH
T ss_pred ceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC--------eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccc
Confidence 35677888 77776666 78999999886 56667752 22 1234578899998 45554
Q ss_pred -------------CCCcEEEEeCCCc
Q 003171 260 -------------EGGGIKIWPWEAI 272 (842)
Q Consensus 260 -------------~DgtIrvWd~~t~ 272 (842)
.+.+|.+||+++.
T Consensus 213 ~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 213 IEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp HTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred cccccchhhhhhccCCEEEEEECCCC
Confidence 3789999999764
No 288
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.15 E-value=0.53 Score=54.60 Aligned_cols=258 Identities=11% Similarity=0.034 Sum_probs=138.4
Q ss_pred cCCEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEE-c-CCCCEEEEEe------
Q 003171 141 TEEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVG-D-EASGVVWSGH------ 210 (842)
Q Consensus 141 ~~~~l~~~~--D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~-d-pdg~~LaSGs------ 210 (842)
+++.||+.. +..|.+-|+++...... . ..| . ......+++ + |++++|+.++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~i------------i-~ip-----~-g~~phg~~~~~~p~~~~v~~~~~~~~p~ 160 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAI------------L-EIP-----N-AKGIHGLRPQKWPRSNYVFCNGEDETPL 160 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEE------------E-ECS-----S-CCSEEEEEECCSSBCSEEEEEECSCEES
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeE------------E-eCC-----C-CCCCcceeeeecCCCcEEEEeccccccc
Confidence 577888854 45799999987653321 0 011 1 224556776 5 8999999984
Q ss_pred ------------CCCcEEEEECCCCccCCCCCcceeEEec-ccCCcEEEEEEecCCC-EEEeeCC---------------
Q 003171 211 ------------RDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEG--------------- 261 (842)
Q Consensus 211 ------------~DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L~SgS~D--------------- 261 (842)
+++.+-+.|.++. +...+.. +- ++ ..++++|+|+ +++.+.+
T Consensus 161 ~~dg~~l~~~~~~~~~vtvID~~t~--------~v~~qI~Vgg-~p-d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 161 VNDGTNMEDVANYVNVFTAVDADKW--------EVAWQVLVSG-NL-DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp SCSSSSTTCGGGEEEEEEEEETTTT--------EEEEEEEESS-CC-CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred CCCCcccccccccCceEEEEECCCC--------eEEEEEEeCC-Cc-cceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence 3457888998874 3333322 11 22 4577999998 5565544
Q ss_pred CcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeec-CCEEEEEEcCCCCEEEEeC--CCcEEEEE
Q 003171 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILT-SDIKNLLSDHSRAKVWSAG--FLSFALWD 338 (842)
Q Consensus 262 gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s-~~v~~las~~~~~~v~s~s--~~tI~lWD 338 (842)
..|.+-|+...+... ....... .-.-+.+|.+......-...++. ...-.+.++++|..++.++ ..+|.++|
T Consensus 231 d~v~V~~~~~~~~~v---~~Gk~~~--i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid 305 (595)
T 1fwx_A 231 DHIVVFNIAEIEKAI---AAGDYQE--LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLD 305 (595)
T ss_dssp EEEEEEEHHHHHHHH---HHTCSEE--ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEE
T ss_pred ceEEEeeccceeEec---cCCCeeE--ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEE
Confidence 346666664322111 0000000 00012344433100000112221 1334577788888777765 36899999
Q ss_pred ccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccC
Q 003171 339 ARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (842)
Q Consensus 339 ~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~ 418 (842)
+.+.+.. +.+ .. + . ... +.+. ..-
T Consensus 306 ~~~~~~~--~~~--~l----~--~------~~~---------------------------v~~~-------------v~v 329 (595)
T 1fwx_A 306 VTRFDAV--FYE--NA----D--P------RSA---------------------------VVAE-------------PEL 329 (595)
T ss_dssp GGGHHHH--HHS--CC----C--G------GGG---------------------------EEEC-------------CBC
T ss_pred Ccccccc--ccc--cc----C--c------ccc---------------------------eEEE-------------cCC
Confidence 8764310 000 00 0 0 000 0000 011
Q ss_pred CCceEEEEECCCCcEEE-EeCCCeEEEEcC-C----------CCeeeeeecCCccE--EE-----EEecCCEEEEEec--
Q 003171 419 NRRTEALTTSIDGMIWT-GGANGLLLQWDP-N----------GNRLQDFQYLPFAV--QC-----LCTFGSQIWVGYM-- 477 (842)
Q Consensus 419 ~~~v~al~~s~dg~l~S-gs~DgtIrlWD~-~----------g~~l~~l~~H~~~V--~s-----ls~dG~~LasGs~-- 477 (842)
......++|++||.+++ .--|+.|.+||+ + .+.+.++..|-.+- .. +.+||++|+++..
T Consensus 330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence 12345688999997654 446899999998 4 34566666554432 21 2579999998763
Q ss_pred -CcE----------EEEEeCCC
Q 003171 478 -NGI----------VQVLDLEG 488 (842)
Q Consensus 478 -Dgt----------IrlWD~~g 488 (842)
|+- -+|.|++|
T Consensus 410 kdr~~~~gp~~~~~~ql~dis~ 431 (595)
T 1fwx_A 410 KDRFLNVGPLKPENDQLIDISG 431 (595)
T ss_dssp TTSSCCCCSSCCEEEEEEECSS
T ss_pred ccccccCCCCCCCcceEEEcCC
Confidence 442 28899875
No 289
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.12 E-value=2 Score=46.38 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=61.7
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 003171 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~ 222 (842)
.|+.+..+.|+..+++.... ...+.+...+..+++++. +.+.|+-...+.|..+++++
T Consensus 46 ~ll~~~~~~I~~i~~~g~~~---------------------~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g 104 (349)
T 3v64_C 46 VLLFANRIDIRQVLPHRSEY---------------------TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNG 104 (349)
T ss_dssp EEEEECBSCEEEECTTSCCE---------------------EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eeEeecccceEEEeCCCCee---------------------EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCC
Confidence 45556667788888753211 111112335788999975 45666666778999999987
Q ss_pred CccCCCCCcceeEEecccCCcEEEEEEecC-CCE-EEeeCCCcEEEEeCCC
Q 003171 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPWEA 271 (842)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd~~t 271 (842)
+. .............+|++++. |.| |+-+..+.|.+.++++
T Consensus 105 ~~--------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 147 (349)
T 3v64_C 105 SN--------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 147 (349)
T ss_dssp CS--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CC--------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence 51 11112222234568999975 456 6777778899988865
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.03 E-value=2.4 Score=46.65 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=60.9
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 003171 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~ 222 (842)
.|+.+....|+.-+++..... ..+.+...+..|++++.. .+.|+-...+.|+.+++.+
T Consensus 85 ~ll~~~~~~I~~i~l~~~~~~---------------------~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g 143 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRSEYT---------------------SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 143 (400)
T ss_dssp EEEEEETTEEEEECTTSCSCE---------------------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred eeEEeccceeEEEccCCccee---------------------EeccccCcceEEeeeeccCceEEEecCCCeEEEEEccc
Confidence 344556678888887642211 111113467889999854 5666666778999999876
Q ss_pred CccCCCCCcceeEEecccCCcEEEEEEec-CCCE-EEeeCCCcEEEEeCCC
Q 003171 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGDL-WSGSEGGGIKIWPWEA 271 (842)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~L-~SgS~DgtIrvWd~~t 271 (842)
.. ............-.....|++++ .+.| |+-+..+.|.+.++++
T Consensus 144 ~~----~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 144 AH----GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp --------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred CC----CCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 20 00011122222345678999998 4556 5767778888888764
No 291
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=96.02 E-value=0.0055 Score=68.12 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=26.5
Q ss_pred eEEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 689 RIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 689 ~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
..|+++|+||..+...-..|..+...|++.+
T Consensus 195 ~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l 225 (398)
T 3ngq_A 195 QLLIVANAHMHWDPEYSDVKLIQTMMFVSEV 225 (398)
T ss_dssp CEEEEEEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999998776778888998888875
No 292
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.79 E-value=3.6 Score=47.59 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=51.6
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccEE--EEEecCCEEEEEecCcEEEEEeCC-Ccccccccccc----cCEEEEEeCCC
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS----SPVIKMAVGAG 509 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V~--sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~----~~V~sla~dg~ 509 (842)
.+|.|..||+ +|+.+-++... ..+. .+...+.+++.|+.|+.|+.||.+ |+++-.+.... .++. ...+|+
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~-~~~~G~ 519 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMT-YSFKGK 519 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE-EEETTE
T ss_pred CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEE-EEECCE
Confidence 4678999999 78876655432 2222 234567888889999999999986 88765554322 2222 235666
Q ss_pred E-EEEEcCCCCee
Q 003171 510 Y-IFTLANHGGIR 521 (842)
Q Consensus 510 ~-l~S~S~DgtIr 521 (842)
. +.+.+..+.++
T Consensus 520 ~yv~~~~G~~g~~ 532 (571)
T 2ad6_A 520 QYIGSMYGVGGWP 532 (571)
T ss_dssp EEEEEEECCCTTT
T ss_pred EEEEEECCCCCcc
Confidence 4 44555555433
No 293
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=95.77 E-value=1.1 Score=50.25 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=42.8
Q ss_pred EEEEc--CCCCEEEE-EeCCCcEEEEECCCCccCCCCCcceeEEec--------ccCCcEEEEEEecCCCEEEeeCC---
Q 003171 196 CMVGD--EASGVVWS-GHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--------AHRGPVLSLCISSYGDLWSGSEG--- 261 (842)
Q Consensus 196 ~la~d--pdg~~LaS-Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~--------gH~~~V~slafs~dG~L~SgS~D--- 261 (842)
|.+++ +++++|+. |-.+++|.+.|+.+.. ...+...+.. |-+ .-..+..+|+|-++|+..+
T Consensus 86 ~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p----~~p~~~k~ie~~~~~~~~g~s-~Ph~~~~~pdGi~Vs~~g~~~g 160 (462)
T 2ece_A 86 CPNGKPNIERRFLIVPGLRSSRIYIIDTKPNP----REPKIIKVIEPEEVKKVSGYS-RLHTVHCGPDAIYISALGNEEG 160 (462)
T ss_dssp STTCCTTCCSCEEEEEBTTTCCEEEEECCSCT----TSCEEEEEECHHHHHHHHCEE-EEEEEEECSSCEEEEEEEETTS
T ss_pred ccccCCCccCCEEEEccCCCCeEEEEECCCCC----CCceeeeeechhhcccccCCC-cccceeECCCeEEEEcCCCcCC
Confidence 44445 66666554 6678899999987531 1112223331 111 2345778899932454444
Q ss_pred ---CcEEEEeCCCcc
Q 003171 262 ---GGIKIWPWEAIE 273 (842)
Q Consensus 262 ---gtIrvWd~~t~~ 273 (842)
+.|-+.|.++.+
T Consensus 161 ~~~g~v~vlD~~T~~ 175 (462)
T 2ece_A 161 EGPGGILMLDHYSFE 175 (462)
T ss_dssp CSCCEEEEECTTTCC
T ss_pred CCCCeEEEEECCCCe
Confidence 789999987654
No 294
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.74 E-value=0.053 Score=56.59 Aligned_cols=107 Identities=11% Similarity=-0.003 Sum_probs=76.4
Q ss_pred eEEEEECCCCcEE-EEeCCCeEEEEcC-CCCeeeeeecCCc-cEEEEEecCCEEEEEe-cCcEEEEEeCC-Ccccccccc
Q 003171 422 TEALTTSIDGMIW-TGGANGLLLQWDP-NGNRLQDFQYLPF-AVQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVA 496 (842)
Q Consensus 422 v~al~~s~dg~l~-Sgs~DgtIrlWD~-~g~~l~~l~~H~~-~V~sls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~g 496 (842)
...|.++ +++|+ +.+.+|.|+..|+ +|+.++++ .... ---.++++|.+||... .++.+.++|.+ .+.+.++..
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 3557776 45665 5556788999999 79888877 3222 2235788888777765 58999999987 677777764
Q ss_pred cccCEEEEEeCCCEEEEEcCCCCeeeccccCCCCC
Q 003171 497 HSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 497 H~~~V~sla~dg~~l~S~S~DgtIrvWd~~~~~~~ 531 (842)
- ..=+.++.|++.|+....++.|.++|..+...+
T Consensus 135 ~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 135 S-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALV 168 (268)
T ss_dssp S-SCCCCEEEETTEEEEECSSSEEEEECTTTCCEE
T ss_pred C-CceeEEecCCCEEEEECCCCEEEEEcCCCCeEE
Confidence 3 223677888988887667888999997665443
No 295
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.63 E-value=5.7 Score=47.91 Aligned_cols=77 Identities=12% Similarity=0.127 Sum_probs=48.7
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-CE-EEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DL-WSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L-~SgS~DgtIrvW 267 (842)
...+..|++++. +.+.|+-...+.|+.+++.+.. ........+...-.....|++++.+ +| |+-+..+.|.+.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~----~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH----GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCC----CCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 346788999984 5566777777889999987631 0001112222233456789999877 45 677778899998
Q ss_pred eCCC
Q 003171 268 PWEA 271 (842)
Q Consensus 268 d~~t 271 (842)
++++
T Consensus 499 ~ldG 502 (791)
T 3m0c_C 499 DTKG 502 (791)
T ss_dssp ETTS
T ss_pred eCCC
Confidence 8865
No 296
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.60 E-value=1.3 Score=52.13 Aligned_cols=70 Identities=7% Similarity=0.127 Sum_probs=45.5
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCccCCCCCcceeEEe-cccCCcEEEEEEecCCCE-EEee-C
Q 003171 196 CMVGDE-ASGVVWSGHRDG-----------RIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGDL-WSGS-E 260 (842)
Q Consensus 196 ~la~dp-dg~~LaSGs~DG-----------tIrlWdl~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~L-~SgS-~ 260 (842)
++++.+ ++++++.|+.+. .+.+||..++. ...+..+ ..|.....++++..+|+| +.|+ .
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~------w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI------VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC------BCCCEEEECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc------EEeCcccCCCCCCccccccCCCCCCEEEeCCCC
Confidence 345556 889999988653 57889988752 2222222 223333445778889995 5676 4
Q ss_pred CCcEEEEeCCC
Q 003171 261 GGGIKIWPWEA 271 (842)
Q Consensus 261 DgtIrvWd~~t 271 (842)
+..+.+||..+
T Consensus 264 ~~~v~~yd~~t 274 (656)
T 1k3i_A 264 AKKTSLYDSSS 274 (656)
T ss_dssp TTCEEEEEGGG
T ss_pred CCceEEecCcC
Confidence 56899999865
No 297
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.59 E-value=2.7 Score=48.89 Aligned_cols=85 Identities=21% Similarity=0.316 Sum_probs=53.4
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccEE--EEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEE-E--EeCCC-
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-M--AVGAG- 509 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V~--sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s-l--a~dg~- 509 (842)
.+|.|.-||+ +|+.+=+...+. ++. .+...|..++.|+.|+.|+.||.+ |+.+-.+....+.+.+ + ..+|+
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence 3688999999 787764443322 222 245568889999999999999986 8877666544332211 2 35776
Q ss_pred EEEEEcC-CCCeeec
Q 003171 510 YIFTLAN-HGGIRGW 523 (842)
Q Consensus 510 ~l~S~S~-DgtIrvW 523 (842)
+++..+. .+.+-+|
T Consensus 543 Yv~~~~G~gg~~~~~ 557 (582)
T 1flg_A 543 YLGVTVGYGGAVPLW 557 (582)
T ss_dssp EEEEEECCCSHHHHH
T ss_pred EEEEEccCCCccccc
Confidence 4544433 4445555
No 298
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=95.57 E-value=0.08 Score=54.98 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=26.8
Q ss_pred CCCeeEEEEEEeCeEEEEEeecCcCCcchHHHHHHHHHHHHHh
Q 003171 676 NKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718 (842)
Q Consensus 676 nKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~ 718 (842)
..|+++++ +.+ +.|++.||.+... .+|.+..+.|...
T Consensus 121 ~R~~l~i~--i~g--~~f~s~Hl~~~~~--~ea~~~v~~I~~~ 157 (261)
T 1sr4_B 121 SRPAVGIR--IGT--DVFFTVHALATGG--SDAVSLIRNIFTT 157 (261)
T ss_dssp CCCEEEEE--ETT--EEEEEEECCTTTT--TTHHHHHHHHHHH
T ss_pred CcceEEEE--ECC--eEEEEeCCCCCCC--chHHHHHHHHHHH
Confidence 78888884 666 9999999999852 3355556666554
No 299
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.54 E-value=1 Score=52.49 Aligned_cols=52 Identities=19% Similarity=0.327 Sum_probs=34.7
Q ss_pred CcEEEEEeCC-CcccccccccccCEE--EEEeCCCEEEEEcCCCCeeeccccCCCC
Q 003171 478 NGIVQVLDLE-GNLLGGWVAHSSPVI--KMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V~--sla~dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
+|+|..||+. |+.+=....+. .++ .+...+..++.++.|+.++.||.++...
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 6899999986 76542222221 222 2345677888999999999999776443
No 300
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.46 E-value=0.39 Score=57.75 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=55.0
Q ss_pred EEEECCCCc-EEEEe---CCCeEEEEcCC-CC-ee--eeee-cCCccEEEEE-ecCCEEEEEec-C----cEEEEEeCCC
Q 003171 424 ALTTSIDGM-IWTGG---ANGLLLQWDPN-GN-RL--QDFQ-YLPFAVQCLC-TFGSQIWVGYM-N----GIVQVLDLEG 488 (842)
Q Consensus 424 al~~s~dg~-l~Sgs---~DgtIrlWD~~-g~-~l--~~l~-~H~~~V~sls-~dG~~LasGs~-D----gtIrlWD~~g 488 (842)
.+.+||||+ |+..+ ....|.++|++ ++ .. +.+. .......++. .+|+.|+..+. + ..|.++|+++
T Consensus 275 ~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 275 FMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 345667775 43222 23357778884 31 22 3333 3344555555 45776665443 3 3677777763
Q ss_pred -ccccc-cccccc--CEEEEEeCCCE-EEEEcCCCCeeeccc
Q 003171 489 -NLLGG-WVAHSS--PVIKMAVGAGY-IFTLANHGGIRGWNV 525 (842)
Q Consensus 489 -~~i~~-l~gH~~--~V~sla~dg~~-l~S~S~DgtIrvWd~ 525 (842)
...+. +..|.. .+.++.++++. +++...|+..++|-+
T Consensus 355 ~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 355 PSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred cccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEE
Confidence 33334 444544 34566665555 457777887666654
No 301
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.45 E-value=4.2 Score=45.25 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=43.0
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeC
Q 003171 193 SVMCMVGDEA--SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE 260 (842)
Q Consensus 193 ~V~~la~dpd--g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~ 260 (842)
...+|+++|+ .+.||.+...+.|+.+++.++ .+..+.+......+|+++++|+|+.+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g---------~v~~~~~~~~~P~giavd~dG~lyVad~ 200 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ---------YVDIKTTNIGQCADVNFTLNGDMVVVDD 200 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT---------EEEEECCCCSCEEEEEECTTCCEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC---------EEEEeecCCCCccEEEECCCCCEEEEcC
Confidence 4568999984 566777666589999999775 3444544455689999999999765543
No 302
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.03 E-value=2.6 Score=46.97 Aligned_cols=58 Identities=9% Similarity=0.039 Sum_probs=42.0
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee
Q 003171 193 SVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (842)
Q Consensus 193 ~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS 259 (842)
....|++|| +++.|+.....+.|+.+|++++ .+..+.........|+|+++|+ |+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~---------~v~~~~~~~~~P~~ia~d~~G~~lyvad 197 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE---------YVSTVYSGLSKVRTICWTHEADSMIITN 197 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT---------EEEEEECCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC---------EEEEEecCCCCcceEEEeCCCCEEEEEe
Confidence 456789998 5677887777688999999874 3334433445678999999998 76444
No 303
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.03 E-value=4.4 Score=43.02 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=61.2
Q ss_pred ceEEEEECCCCcEEEEeCCCeEEEEcCC-CCeeeeee-c---CCccEEEEEec-CCEEEEEecCcEEEEEeCC-Cccccc
Q 003171 421 RTEALTTSIDGMIWTGGANGLLLQWDPN-GNRLQDFQ-Y---LPFAVQCLCTF-GSQIWVGYMNGIVQVLDLE-GNLLGG 493 (842)
Q Consensus 421 ~v~al~~s~dg~l~Sgs~DgtIrlWD~~-g~~l~~l~-~---H~~~V~sls~d-G~~LasGs~DgtIrlWD~~-g~~i~~ 493 (842)
.+..+++++++.+|.++.+|.+.+++.+ |+--..+. . +...+.++.++ ...+++++.++.| .+... |+.-..
T Consensus 206 ~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~ 284 (327)
T 2xbg_A 206 RLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQ 284 (327)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEE
T ss_pred ccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEE
Confidence 3456677888888888888888887543 44333222 1 23457788663 2344444557777 34443 443222
Q ss_pred cc---ccccCEEEEEe-CCCEEEEEcCCCCeeecc
Q 003171 494 WV---AHSSPVIKMAV-GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 494 l~---gH~~~V~sla~-dg~~l~S~S~DgtIrvWd 524 (842)
+. .+...+.+|.+ ++..++.++.+|+|..++
T Consensus 285 ~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 285 DVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp CGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred cCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 22 23455677765 566788888999877665
No 304
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=94.99 E-value=0.24 Score=51.00 Aligned_cols=107 Identities=14% Similarity=0.055 Sum_probs=75.0
Q ss_pred eEEEEECCCCcEEEEeCC---CeEEEEcC-CCCeeeeeecCCcc-EEEEEecCCEEEEEe-cCcEEEEEeCC-Ccccccc
Q 003171 422 TEALTTSIDGMIWTGGAN---GLLLQWDP-NGNRLQDFQYLPFA-VQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGW 494 (842)
Q Consensus 422 v~al~~s~dg~l~Sgs~D---gtIrlWD~-~g~~l~~l~~H~~~-V~sls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l 494 (842)
+..|.|++ ++|+.++.. ..|+..|+ +|+.++.+...... --.+.+++.+|+... .++.+.++|.+ .+.+.++
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti 101 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARF 101 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEE
Confidence 45677775 677655443 38999999 79988877643322 235677888888766 58999999987 6777776
Q ss_pred cccccCEEEEEeCCCEEEEEcCCCCeeeccccCCCC
Q 003171 495 VAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 495 ~gH~~~V~sla~dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
...... +.++.|++.|+....++.|.++|..+...
T Consensus 102 ~~~~~G-wglt~dg~~L~vSdgs~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 102 RYPGEG-WALTSDDSHLYMSDGTAVIRKLDPDTLQQ 136 (243)
T ss_dssp ECSSCC-CEEEECSSCEEEECSSSEEEEECTTTCCE
T ss_pred eCCCCc-eEEeeCCCEEEEECCCCeEEEEeCCCCeE
Confidence 543322 67788888776555678899998766543
No 305
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.99 E-value=2.7 Score=49.06 Aligned_cols=77 Identities=21% Similarity=0.344 Sum_probs=49.0
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccEE--EEEecCCEEEEEecCcEEEEEeCC-Cccccccccccc----CEEEEEeCCC
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS----PVIKMAVGAG 509 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V~--sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~----~V~sla~dg~ 509 (842)
.+|.|.-||+ +|+.+=.... ..++. .+...|..++.|+.|+.|+.||.+ |+.+-.+....+ ++. ...+|+
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~-y~~~G~ 528 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMT-YTHKGT 528 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE-EEETTE
T ss_pred CcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEE-EEeCCE
Confidence 3578999999 7876544432 11222 256678888899999999999987 887655543332 222 235776
Q ss_pred -EEEEEcC
Q 003171 510 -YIFTLAN 516 (842)
Q Consensus 510 -~l~S~S~ 516 (842)
++++.+.
T Consensus 529 qyv~~~~G 536 (599)
T 1w6s_A 529 QYVAIYYG 536 (599)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEcc
Confidence 4554443
No 306
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=94.57 E-value=0.76 Score=53.27 Aligned_cols=92 Identities=10% Similarity=0.096 Sum_probs=56.2
Q ss_pred EEEEECCCCc-E-EEEeCCCeEEEEcCC-CC------------eeeeeecCCccEE-EEEecCCEEEEEe-cCcEEEEEe
Q 003171 423 EALTTSIDGM-I-WTGGANGLLLQWDPN-GN------------RLQDFQYLPFAVQ-CLCTFGSQIWVGY-MNGIVQVLD 485 (842)
Q Consensus 423 ~al~~s~dg~-l-~Sgs~DgtIrlWD~~-g~------------~l~~l~~H~~~V~-sls~dG~~LasGs-~DgtIrlWD 485 (842)
..+.++|||+ + +++-.+.+|.++|.+ .+ .+.+......+-. .+.++| ++++.. .|+.|.+||
T Consensus 280 hGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwd 358 (595)
T 1fwx_A 280 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWN 358 (595)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEE
T ss_pred eEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEE
Confidence 3578999998 4 344467889999995 32 2333333333322 345578 777655 599999999
Q ss_pred CCC-----------cccccccccccCE--EE-----EEeCCCEEEEEc
Q 003171 486 LEG-----------NLLGGWVAHSSPV--IK-----MAVGAGYIFTLA 515 (842)
Q Consensus 486 ~~g-----------~~i~~l~gH~~~V--~s-----la~dg~~l~S~S 515 (842)
++. +.+.++..|-.+- .. +.+||++|+++-
T Consensus 359 i~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 359 IEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred hhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 742 2455555554431 11 126888888753
No 307
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=93.82 E-value=8.4 Score=41.27 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=60.2
Q ss_pred eEEEEECC-CCcE-EEEeCC-CeEEEEcCCCCeeeeeec-CCccEEEEEe--cCCEEEEEe-cCcEEEEEeCCCcccccc
Q 003171 422 TEALTTSI-DGMI-WTGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (842)
Q Consensus 422 v~al~~s~-dg~l-~Sgs~D-gtIrlWD~~g~~l~~l~~-H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~g~~i~~l 494 (842)
...++++| +|.| |+-..+ +.|...+++|.....+.. .-..-+.|+. ++.+|+.+. ..+.|+.+|+.|...+++
T Consensus 161 P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~ 240 (349)
T 3v64_C 161 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240 (349)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE
Confidence 34566776 4555 454444 778888888765555432 2334566665 466666655 467999999987543332
Q ss_pred -cccccCEEEEEeCCCEEEEEc-CCCCeeecc
Q 003171 495 -VAHSSPVIKMAVGAGYIFTLA-NHGGIRGWN 524 (842)
Q Consensus 495 -~gH~~~V~sla~dg~~l~S~S-~DgtIrvWd 524 (842)
........+|+.++..++++. ..+.|...+
T Consensus 241 ~~~~~~~P~giav~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 241 ISQGLPHPFAITVFEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp ECSSCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred EeCCCCCceEEEEECCEEEEecCCCCeEEEEE
Confidence 222334566665566666554 344555444
No 308
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=93.68 E-value=9.9 Score=41.62 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=61.8
Q ss_pred eEEEEECC-CCcE-EEEeC-CCeEEEEcCCCCeeeeeec-CCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCcccccc
Q 003171 422 TEALTTSI-DGMI-WTGGA-NGLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (842)
Q Consensus 422 v~al~~s~-dg~l-~Sgs~-DgtIrlWD~~g~~l~~l~~-H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~l 494 (842)
...|+++| +|.| |+-.. .+.|...+++|...+.+.. .-...+.|+.| +.+|+.+. ..+.|+..|++|...+++
T Consensus 204 P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (400)
T 3p5b_L 204 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 283 (400)
T ss_dssp EEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEE
T ss_pred cceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEE
Confidence 34566666 4555 33322 3568888888765555432 22455667665 66776665 467999999987544333
Q ss_pred cc---cccCEEEEEeCCCEEEEEc-CCCCeeeccc
Q 003171 495 VA---HSSPVIKMAVGAGYIFTLA-NHGGIRGWNV 525 (842)
Q Consensus 495 ~g---H~~~V~sla~dg~~l~S~S-~DgtIrvWd~ 525 (842)
.. .-..-.+|+.+++.+++.. ..+.|..++.
T Consensus 284 ~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 284 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp EECSSTTSSEEEEEEETTEEEEEESSSCSEEEEES
T ss_pred EeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEc
Confidence 21 2234567776666666554 4556766663
No 309
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=93.64 E-value=14 Score=43.22 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=48.6
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-CE-EEeeCCCcEEEEe
Q 003171 192 SSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DL-WSGSEGGGIKIWP 268 (842)
Q Consensus 192 ~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L-~SgS~DgtIrvWd 268 (842)
..+..|++++++ .+.|+-..++.|..+++++.. ....+..-......||+++.+ +| |+-+..+.|.+-+
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~--------~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~ 108 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSA--------LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSK 108 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCC--------cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEe
Confidence 357789999854 556676778899999987641 111122112346789999765 46 6777778888888
Q ss_pred CCC
Q 003171 269 WEA 271 (842)
Q Consensus 269 ~~t 271 (842)
+++
T Consensus 109 ~dG 111 (628)
T 4a0p_A 109 LDG 111 (628)
T ss_dssp TTS
T ss_pred cCC
Confidence 765
No 310
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=93.39 E-value=0.013 Score=70.67 Aligned_cols=33 Identities=6% Similarity=0.028 Sum_probs=0.0
Q ss_pred eCeEEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 687 YDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 687 ~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
.+..|+++|+||.++...-..|..+...|++.+
T Consensus 545 ~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l 577 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHL 577 (727)
T ss_dssp ---------------------------------
T ss_pred CCceEEEEEeccccCCCCCchHHHHHHHHHHHH
Confidence 367899999999887544455666666665554
No 311
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=93.38 E-value=18 Score=43.60 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=61.4
Q ss_pred eEEEEECCC-CcE-EEEeCC-CeEEEEcCCCCeeeeeec-CCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCcccccc
Q 003171 422 TEALTTSID-GMI-WTGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (842)
Q Consensus 422 v~al~~s~d-g~l-~Sgs~D-gtIrlWD~~g~~l~~l~~-H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~l 494 (842)
...|+++|. |.| |+-..+ +.|.+.+++|..++++.. .-.+.+.|+.| +.+|+.+. ....|+..|+.|..+.++
T Consensus 516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence 445677664 555 443233 678888888866655543 23466777765 56666655 467899999987644433
Q ss_pred cc---cccCEEEEEeCCCEEEEEcC-CCCeeecc
Q 003171 495 VA---HSSPVIKMAVGAGYIFTLAN-HGGIRGWN 524 (842)
Q Consensus 495 ~g---H~~~V~sla~dg~~l~S~S~-DgtIrvWd 524 (842)
.. .-....+|+.++++|+++.. .+.|..-+
T Consensus 596 ~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 596 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp EECTTTTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred ecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEe
Confidence 21 22345677766667776654 34444433
No 312
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=92.92 E-value=11 Score=39.87 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=41.0
Q ss_pred eEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeee---cCCccEEEEEe-cCCEEEEEecCcEEEEEeC
Q 003171 422 TEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQ---YLPFAVQCLCT-FGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 422 v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~---~H~~~V~sls~-dG~~LasGs~DgtIrlWD~ 486 (842)
+.++++.+++.++.++.++.| ++.. .|+--+.+. .+...+.++.+ ++..+++++.+|+|.-++-
T Consensus 252 ~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 252 FLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred eEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 456677777888777778877 4544 354433333 12345667755 4567778888998887764
No 313
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=92.74 E-value=0.39 Score=49.52 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=29.6
Q ss_pred CCCCeeEEEEEEeCeEEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 675 GNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 675 gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
+....++|++ + .+.|.+.|+.|.-+ ..|.+..+.|.+-+
T Consensus 129 ~~Rp~lgiri---~-~~~ff~tHa~a~~g--~da~a~v~~I~~~~ 167 (262)
T 2f1n_A 129 GGRPLLGIRI---G-NDAFFTAHAIAMRN--NDAPALVEEVYNFF 167 (262)
T ss_dssp TCCCEEEEEE---T-TEEEEEEECCSSSS--CSHHHHHHHHHHHH
T ss_pred CCCceEEEEE---C-CEEEEEEEecCCCC--ccHHHHHHHHHHHH
Confidence 3788999888 2 59999999999733 34777787887753
No 314
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=92.51 E-value=14 Score=40.13 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=59.3
Q ss_pred eEEEEECC-CCcE-EEEeCC-CeEEEEcCCCCeeeeeec-CCccEEEEEe--cCCEEEEEe-cCcEEEEEeCCCcccccc
Q 003171 422 TEALTTSI-DGMI-WTGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (842)
Q Consensus 422 v~al~~s~-dg~l-~Sgs~D-gtIrlWD~~g~~l~~l~~-H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~g~~i~~l 494 (842)
...++++| +|.| |+-... +.|...+++|.....+.. .-..-+.|+. ++.+|+.+. ..+.|+.+|+.|...+++
T Consensus 204 P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (386)
T 3v65_B 204 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 283 (386)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE
T ss_pred CcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE
Confidence 34566665 4455 444444 678888887765555432 2334556665 466666655 467899999886533322
Q ss_pred -cccccCEEEEEeCCCEEEEEc-CCCCeeecc
Q 003171 495 -VAHSSPVIKMAVGAGYIFTLA-NHGGIRGWN 524 (842)
Q Consensus 495 -~gH~~~V~sla~dg~~l~S~S-~DgtIrvWd 524 (842)
........+|+.++..++++. ..+.|...+
T Consensus 284 ~~~~~~~P~giav~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 284 ISQGLPHPFAITVFEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp ECSSCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred EECCCCCceEEEEECCEEEEeeCCCCeEEEEE
Confidence 222334566766666666554 445565554
No 315
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=92.48 E-value=12 Score=39.30 Aligned_cols=103 Identities=13% Similarity=0.065 Sum_probs=60.4
Q ss_pred EEEEECC-CCcE-EEEeCC-CeEEEEcCCCCeeeeeec-CCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCccccccc
Q 003171 423 EALTTSI-DGMI-WTGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGWV 495 (842)
Q Consensus 423 ~al~~s~-dg~l-~Sgs~D-gtIrlWD~~g~~l~~l~~-H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~l~ 495 (842)
..++++| +|.| |+.... +.|...+++|...+.+.. .-..-+.|+.| +.+|+.+. ..+.|...|.+|...+++.
T Consensus 123 ~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~ 202 (316)
T 1ijq_A 123 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 202 (316)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred ceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEe
Confidence 4566665 4555 443333 678888888766555432 23345666654 66776655 4679999999875444332
Q ss_pred c---cccCEEEEEeCCCEEEEEc-CCCCeeeccc
Q 003171 496 A---HSSPVIKMAVGAGYIFTLA-NHGGIRGWNV 525 (842)
Q Consensus 496 g---H~~~V~sla~dg~~l~S~S-~DgtIrvWd~ 525 (842)
. .-....+|+.++..++++. ..+.|...+.
T Consensus 203 ~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 203 EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred ecCCccCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence 1 1233566776666666544 4456666553
No 316
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=92.44 E-value=16 Score=40.54 Aligned_cols=107 Identities=10% Similarity=0.092 Sum_probs=58.5
Q ss_pred EEEecC----CEEEEecC-CCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 137 TIVCTE----EQLWAGGE-NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 137 ~l~~~~----~~l~~~~D-~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
.|+.+. ..||.+.. +.|+++|+++..... +.. . .....+++++++|+++++-..
T Consensus 143 gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~------------------~~~--~-~~~P~giavd~dG~lyVad~~ 201 (433)
T 4hw6_A 143 RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI------------------KTT--N-IGQCADVNFTLNGDMVVVDDQ 201 (433)
T ss_dssp EEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE------------------ECC--C-CSCEEEEEECTTCCEEEEECC
T ss_pred eEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE------------------eec--C-CCCccEEEECCCCCEEEEcCC
Confidence 445553 57887543 899999986533211 000 1 335788999999995555432
Q ss_pred C---CcEEEE-ECCCCccCCCCCcceeEEecccCCcEEEEEEec-CCCEEEee-CCCcEEEEeCCCc
Q 003171 212 D---GRIMCW-KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGDLWSGS-EGGGIKIWPWEAI 272 (842)
Q Consensus 212 D---GtIrlW-dl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~L~SgS-~DgtIrvWd~~t~ 272 (842)
. ..-.++ +...+ +.....+. .-..-..++++| +|.|+.+. .++.|+.++..++
T Consensus 202 ~~~~~~gv~~~~~~~~-------~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 202 SSDTNTGIYLFTRASG-------FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp SCTTSEEEEEECGGGT-------TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred CCcccceEEEEECCCC-------eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 1 121222 22221 11111111 123345688999 78887554 5678888887643
No 317
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=91.88 E-value=0.37 Score=57.59 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=43.3
Q ss_pred EEEEECCC-CcE-EEEeCCCeEEEEcCCCCeeeeeecC---CccEEEEEecCCEE-EEEecCcEEEEEeCC-Ccccccc
Q 003171 423 EALTTSID-GMI-WTGGANGLLLQWDPNGNRLQDFQYL---PFAVQCLCTFGSQI-WVGYMNGIVQVLDLE-GNLLGGW 494 (842)
Q Consensus 423 ~al~~s~d-g~l-~Sgs~DgtIrlWD~~g~~l~~l~~H---~~~V~sls~dG~~L-asGs~DgtIrlWD~~-g~~i~~l 494 (842)
..|+++++ ++| |+-+..+.|..+|++|...+++... ......|++++.+| |+....+.|..+|.. |+.++++
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEe
Confidence 35778875 456 4444567899999977554444321 12233556666644 454456889999864 6555444
No 318
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=90.88 E-value=29 Score=40.49 Aligned_cols=102 Identities=10% Similarity=0.010 Sum_probs=55.9
Q ss_pred EEEEECC-CCcEEEEe--CCCeEEEEcCCCCeeeeeecCCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCcccccccc
Q 003171 423 EALTTSI-DGMIWTGG--ANGLLLQWDPNGNRLQDFQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGWVA 496 (842)
Q Consensus 423 ~al~~s~-dg~l~Sgs--~DgtIrlWD~~g~~l~~l~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~l~g 496 (842)
..++++| +|.|+... ..+.|...+++|..++.+...-..-+.|+.| +++|+.+. ..+.|...|+.|...+.+..
T Consensus 126 ~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~ 205 (628)
T 4a0p_A 126 RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD 205 (628)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred ccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeec
Confidence 4556665 45553332 1345666677665554444334455666654 55665554 35688888887643333333
Q ss_pred cccCEEEEEeCCCEEEEEcC-CCCeeecc
Q 003171 497 HSSPVIKMAVGAGYIFTLAN-HGGIRGWN 524 (842)
Q Consensus 497 H~~~V~sla~dg~~l~S~S~-DgtIrvWd 524 (842)
......+|+.++..++++.. .+.|...|
T Consensus 206 ~l~~P~glav~~~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 206 DLPHPFGLTQYQDYIYWTDWSRRSIERAN 234 (628)
T ss_dssp CCSCEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred cCCCceEEEEECCEEEEecCCCCEEEEEE
Confidence 33345566665566665543 45555555
No 319
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=88.34 E-value=27 Score=37.32 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.9
Q ss_pred EEEEEEecCCCEEEeeCCCcEEEEe
Q 003171 244 VLSLCISSYGDLWSGSEGGGIKIWP 268 (842)
Q Consensus 244 V~slafs~dG~L~SgS~DgtIrvWd 268 (842)
-.+|+|.|+|+|+.+..++.|++++
T Consensus 33 P~~ia~~pdG~l~V~e~~g~I~~i~ 57 (352)
T 2ism_A 33 PWALAFLPDGGMLIAERPGRIRLFR 57 (352)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEE
T ss_pred ceEEEEcCCCeEEEEeCCCeEEEEE
Confidence 4689999999988888889999988
No 320
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=87.59 E-value=27 Score=35.75 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=46.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcc--eeEEe----cccCCcEEEEEEecCCC-EEEeeCCCcEE
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFG--EVLSW----QAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~--~~~~l----~gH~~~V~slafs~dG~-L~SgS~DgtIr 265 (842)
-.-.+++.+++.++++--.++.+.+.++.... ... ....+ ..+....-+|+++|.++ ||.+.+....+
T Consensus 71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~-----~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~ 145 (255)
T 3qqz_A 71 DLETIEYIGDNQFVISDERDYAIYVISLTPNS-----EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIE 145 (255)
T ss_dssp SEEEEEECSTTEEEEEETTTTEEEEEEECTTC-----CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEE
T ss_pred ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC-----eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCce
Confidence 45567777777766665566777777766531 001 11111 12345678999999885 88888777777
Q ss_pred EEeCC
Q 003171 266 IWPWE 270 (842)
Q Consensus 266 vWd~~ 270 (842)
||.++
T Consensus 146 i~~~~ 150 (255)
T 3qqz_A 146 VYKVN 150 (255)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 77764
No 321
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=87.14 E-value=32 Score=36.14 Aligned_cols=103 Identities=9% Similarity=0.023 Sum_probs=56.9
Q ss_pred EEEEECC-CCcEEEEe--CCCeEEEEcCCCCeeeeeec-CCccEEEEEe--cCCEEEEEe-cCcEEEEEeCCCccccccc
Q 003171 423 EALTTSI-DGMIWTGG--ANGLLLQWDPNGNRLQDFQY-LPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLEGNLLGGWV 495 (842)
Q Consensus 423 ~al~~s~-dg~l~Sgs--~DgtIrlWD~~g~~l~~l~~-H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~g~~i~~l~ 495 (842)
..++++| +|.|+... ..+.|...+++|...+.+.. .-..-+.|+. ++.+|+.+. ..+.|+.+|+.|...+++.
T Consensus 125 ~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~ 204 (318)
T 3sov_A 125 RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV 204 (318)
T ss_dssp EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe
Confidence 3455554 34543333 24567777777755444421 1233455655 466666655 4678999998865433332
Q ss_pred -ccccCEEEEEeCCCEEEEEc-CCCCeeeccc
Q 003171 496 -AHSSPVIKMAVGAGYIFTLA-NHGGIRGWNV 525 (842)
Q Consensus 496 -gH~~~V~sla~dg~~l~S~S-~DgtIrvWd~ 525 (842)
+......+|+.+++.+++.. ..+.|...+.
T Consensus 205 ~~~~~~P~glav~~~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 205 KGSLPHPFALTLFEDILYWTDWSTHSILACNK 236 (318)
T ss_dssp CSCCSCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred cCCCCCceEEEEeCCEEEEEecCCCeEEEEEC
Confidence 23344566776666666544 4455666654
No 322
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=86.22 E-value=4.9 Score=47.74 Aligned_cols=86 Identities=10% Similarity=-0.008 Sum_probs=47.3
Q ss_pred CeEEEEcCCCCeeeeeec-CCccEEEEEe--cCCEEEEEe-cCcEEEEEeCCCcccccccc---cccCEEEEEeCCCEEE
Q 003171 440 GLLLQWDPNGNRLQDFQY-LPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLEGNLLGGWVA---HSSPVIKMAVGAGYIF 512 (842)
Q Consensus 440 gtIrlWD~~g~~l~~l~~-H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~g~~i~~l~g---H~~~V~sla~dg~~l~ 512 (842)
+.|.+.+++|...+.+.. .-..-+.|+. ++.+|+.+. ..+.|.++|+.|...+++.. .-....+|+.+++.|+
T Consensus 519 ~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~ly 598 (699)
T 1n7d_A 519 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF 598 (699)
T ss_dssp CCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEE
T ss_pred CeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEE
Confidence 567777777654444321 1223344555 455555444 57899999998643333321 1122345566666766
Q ss_pred EEc-CCCCeeeccc
Q 003171 513 TLA-NHGGIRGWNV 525 (842)
Q Consensus 513 S~S-~DgtIrvWd~ 525 (842)
++. ..+.|...+.
T Consensus 599 wtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 599 WTDIINEAIFSANR 612 (699)
T ss_dssp EECSTTTCEEEEET
T ss_pred EEeCCCCeEEEEEc
Confidence 555 4456776663
No 323
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=83.24 E-value=66 Score=36.30 Aligned_cols=61 Identities=8% Similarity=-0.015 Sum_probs=40.6
Q ss_pred CeEEEEEcC-CCCEEEEEeCC-CcEEEEECCCCccCCCCCcceeEEecc----cCCcEEEEEE-------ecCCC-EEEe
Q 003171 193 SVMCMVGDE-ASGVVWSGHRD-GRIMCWKMNARLLDSDDGFGEVLSWQA----HRGPVLSLCI-------SSYGD-LWSG 258 (842)
Q Consensus 193 ~V~~la~dp-dg~~LaSGs~D-GtIrlWdl~~g~~~~~~~~~~~~~l~g----H~~~V~slaf-------s~dG~-L~Sg 258 (842)
....|++|| +.+.|+.+..+ +.|++.|+.++ .+.++.. .......|+| +++|+ |+.+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---------~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyva 210 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---------MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVA 210 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---------EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---------EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEE
Confidence 467899999 45666666554 56888888874 3333321 2235899999 99998 7766
Q ss_pred eCCC
Q 003171 259 SEGG 262 (842)
Q Consensus 259 S~Dg 262 (842)
...+
T Consensus 211 d~~~ 214 (496)
T 3kya_A 211 IDYD 214 (496)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 5543
No 324
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=81.82 E-value=83 Score=36.46 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=47.1
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-CE-EEeeCCCcEEEEe
Q 003171 192 SSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DL-WSGSEGGGIKIWP 268 (842)
Q Consensus 192 ~~V~~la~dpdg~-~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L-~SgS~DgtIrvWd 268 (842)
..+..|++++.++ +.|+=...+.|..+++++.. .....+..--.....||+++.+ +| |+-+..+.|.+-+
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-------~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~ 112 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-------SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN 112 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-------ceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEE
Confidence 3577899998555 55565567889999987641 1111222222468899999955 45 5777788999998
Q ss_pred CCC
Q 003171 269 WEA 271 (842)
Q Consensus 269 ~~t 271 (842)
+++
T Consensus 113 ~dG 115 (619)
T 3s94_A 113 LDG 115 (619)
T ss_dssp TTS
T ss_pred CCC
Confidence 865
No 325
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=81.21 E-value=53 Score=33.78 Aligned_cols=86 Identities=12% Similarity=0.088 Sum_probs=48.3
Q ss_pred CCCCc-EEEE-eCCCeEEEEcCC--CCe--eeeeecCCccEE--EEEecCCEEEEEe-cCcEEEEEeCCCcc--cccccc
Q 003171 428 SIDGM-IWTG-GANGLLLQWDPN--GNR--LQDFQYLPFAVQ--CLCTFGSQIWVGY-MNGIVQVLDLEGNL--LGGWVA 496 (842)
Q Consensus 428 s~dg~-l~Sg-s~DgtIrlWD~~--g~~--l~~l~~H~~~V~--sls~dG~~LasGs-~DgtIrlWD~~g~~--i~~l~g 496 (842)
++|+. |+.+ +..+.|..+|.+ |+. .+.+.. ..... ++.++|.. |++. ..+.|.++|.+|+. +.....
T Consensus 175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l-~va~~~~~~V~~~~~~G~~~~~~~~~~ 252 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNL-YGATHIYNSVVRIAPDRSTTIIAQAEQ 252 (306)
T ss_dssp EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCE-EEECBTTCCEEEECTTCCEEEEECGGG
T ss_pred CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCE-EEEeCCCCeEEEECCCCCEEEEeeccc
Confidence 66764 6544 456789999984 332 122211 01112 33446754 5544 47889999998876 323433
Q ss_pred cccCEEEEEeC-----CCEEEEEc
Q 003171 497 HSSPVIKMAVG-----AGYIFTLA 515 (842)
Q Consensus 497 H~~~V~sla~d-----g~~l~S~S 515 (842)
......+++++ ++.|+-++
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEE
T ss_pred ccCCceEEEEecccCCCCEEEEEC
Confidence 33567888754 45555443
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=80.50 E-value=14 Score=41.06 Aligned_cols=121 Identities=7% Similarity=0.058 Sum_probs=74.5
Q ss_pred CceeEEEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 132 GCFLRTIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 132 ~~~~~~l~~~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
+++. .+.-.+..++...++.||.-++........ - ..| ..+. ...|.-+..+|+|++||.-+.
T Consensus 23 ~R~~-~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~------------L-~~~--~~i~-f~~i~qlvlSpsG~lLAl~g~ 85 (452)
T 3pbp_A 23 PRYI-FSSQNGTRIVFIQDNIIRWYNVLTDSLYHS------------L-NFS--RHLV-LDDTFHVISSTSGDLLCLFND 85 (452)
T ss_dssp CEEE-EEETTTTEEEEEETTEEEEEETTTCSSCEE------------E-ECT--TTCC-CCTTCEEEECTTSSEEEEECS
T ss_pred CcEE-EEEcCCCEEEEEECCEEEEEECCCCCcceE------------E-ecC--cccc-cCceeEEEECCCCCEEEEecC
Confidence 3444 233346699999999999999863211100 0 000 0001 124566899999999998755
Q ss_pred CCcEEEEECCCCccCCC-----CCcceeEEec-c-----cCCcEEEEEEecCC----CEEEeeCCCcEEEEeCCC
Q 003171 212 DGRIMCWKMNARLLDSD-----DGFGEVLSWQ-A-----HRGPVLSLCISSYG----DLWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~-----~~~~~~~~l~-g-----H~~~V~slafs~dG----~L~SgS~DgtIrvWd~~t 271 (842)
.+|.|-.+..+..... ..++ ..++. + ...+|..+.|+|-| .|++=..|++||+||+..
T Consensus 86 -~~V~Vv~LP~~~~~~~~~~~~~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 86 -NEIFVMEVPWGYSNVEDVSIQDAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp -SEEEEEECCTTCSCCCCHHHHHTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred -CeEEEEEecCccccCcccccccccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 4777888774310000 1111 22332 1 35789999999975 388889999999999964
No 327
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=77.11 E-value=81 Score=33.60 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=46.0
Q ss_pred EEEEcCCCCEEEEEe-CCCcEEEEECCCCccCCCCCcceeEEecc----cC--CcEEEEEE---ecCCCEEEeeC-----
Q 003171 196 CMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSWQA----HR--GPVLSLCI---SSYGDLWSGSE----- 260 (842)
Q Consensus 196 ~la~dpdg~~LaSGs-~DGtIrlWdl~~g~~~~~~~~~~~~~l~g----H~--~~V~slaf---s~dG~L~SgS~----- 260 (842)
|..|++..+++|.++ ..|+|..|+..++. .....+.+ .. ..+..|.+ .|+|+|+..+.
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~-------~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQS-------HFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCC-------EEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCe-------EEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 578888777777777 89999999987541 12223322 11 13689999 68888765433
Q ss_pred ---------CCcEEEEeCC
Q 003171 261 ---------GGGIKIWPWE 270 (842)
Q Consensus 261 ---------DgtIrvWd~~ 270 (842)
+..|..+|+.
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~ 108 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLP 108 (334)
T ss_dssp CTTSCCSSSCCEEEEEESS
T ss_pred cccccccCCCCEEEEEcCC
Confidence 5778888886
No 328
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=76.86 E-value=85 Score=33.72 Aligned_cols=66 Identities=12% Similarity=0.183 Sum_probs=38.6
Q ss_pred eEEEEECC-CCcEEEEeCCCeEEEEcCC------CCeeeeee-cCCc-cEEEEE----ecCC-EEEEEe-cCcEEEEEeC
Q 003171 422 TEALTTSI-DGMIWTGGANGLLLQWDPN------GNRLQDFQ-YLPF-AVQCLC----TFGS-QIWVGY-MNGIVQVLDL 486 (842)
Q Consensus 422 v~al~~s~-dg~l~Sgs~DgtIrlWD~~------g~~l~~l~-~H~~-~V~sls----~dG~-~LasGs-~DgtIrlWD~ 486 (842)
++.++.++ .|+|+.+-+|..|..+|.+ ++.+..+. +|-. .+..|+ .+|+ +|++.+ .+.+.-|||.
T Consensus 182 ~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 182 TEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred cceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 44455544 4668888887666666643 22333331 2222 455443 2566 777777 4679999998
Q ss_pred C
Q 003171 487 E 487 (842)
Q Consensus 487 ~ 487 (842)
+
T Consensus 262 ~ 262 (355)
T 3amr_A 262 Q 262 (355)
T ss_dssp S
T ss_pred C
Confidence 6
No 329
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=75.56 E-value=1.2e+02 Score=34.96 Aligned_cols=72 Identities=10% Similarity=0.125 Sum_probs=48.7
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC-CCE-EEeeCCCcEEEEe
Q 003171 192 SSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWP 268 (842)
Q Consensus 192 ~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd 268 (842)
..+.+|++|+. +.+.|+-...+.|+.+++++.. . ...+..--+....||++.. +.| |+-+..+.|.+-+
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~-------~-~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~ 420 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG-------S-QFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTR 420 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------C-EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc-------c-EEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEe
Confidence 35778999985 5566666677899999988741 1 1122222345678999974 456 5767778898888
Q ss_pred CCC
Q 003171 269 WEA 271 (842)
Q Consensus 269 ~~t 271 (842)
+++
T Consensus 421 ~~G 423 (619)
T 3s94_A 421 LNG 423 (619)
T ss_dssp TTS
T ss_pred CCC
Confidence 765
No 330
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=74.99 E-value=12 Score=44.81 Aligned_cols=107 Identities=3% Similarity=-0.166 Sum_probs=60.3
Q ss_pred ceEEEEEC-CCCc-EE-EEeCC----CeEEEEcC-CC-Ceee-eeecCCccEEEEEecCCEEEEEecC-----cEEEEEe
Q 003171 421 RTEALTTS-IDGM-IW-TGGAN----GLLLQWDP-NG-NRLQ-DFQYLPFAVQCLCTFGSQIWVGYMN-----GIVQVLD 485 (842)
Q Consensus 421 ~v~al~~s-~dg~-l~-Sgs~D----gtIrlWD~-~g-~~l~-~l~~H~~~V~sls~dG~~LasGs~D-----gtIrlWD 485 (842)
.+.+..+| |||+ |+ +...+ .+|+++|+ +| +.+. .+.... .-.+.++||+.|+....| ..|.+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~-~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTN-GEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEEC-SCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCce-eeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 45678899 9998 44 33333 35999999 56 5322 122110 011346789887776665 3688888
Q ss_pred CCCcc-c--cccc-ccccCEEEE--EeCCCEEEEEcC---CCCeeeccccCC
Q 003171 486 LEGNL-L--GGWV-AHSSPVIKM--AVGAGYIFTLAN---HGGIRGWNVTSP 528 (842)
Q Consensus 486 ~~g~~-i--~~l~-gH~~~V~sl--a~dg~~l~S~S~---DgtIrvWd~~~~ 528 (842)
+.+.. . ..+. .+.....++ ++||++|+..+. ...|.++|+..+
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 86432 1 2222 222344454 468998775442 334667777654
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=70.95 E-value=7.8 Score=39.15 Aligned_cols=66 Identities=8% Similarity=0.029 Sum_probs=41.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcE--------EEEEEecCCCEEEeeCCCcE
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPV--------LSLCISSYGDLWSGSEGGGI 264 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V--------~slafs~dG~L~SgS~DgtI 264 (842)
.+.+++|+|+|.+-+. .+|. +|...... .....|.+-...| .++.|.|+|.|+.. .||.|
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~--Ly~~~~~t-------~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~i 109 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDK--IYKGTPPT-------HDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKL 109 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTE--EEEESCCC-------STTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEE
T ss_pred cceeEEECCCccEEEE--eCCe--EEEECCCC-------CCcccccccccEecccccccceEEEECCCCCEEEe-CCCEE
Confidence 5679999998876555 6676 45443321 1122333322333 78999999998777 56888
Q ss_pred EEEeCC
Q 003171 265 KIWPWE 270 (842)
Q Consensus 265 rvWd~~ 270 (842)
.-|+..
T Consensus 110 yr~~pP 115 (236)
T 1tl2_A 110 YKASPP 115 (236)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 777753
No 332
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=70.64 E-value=64 Score=34.56 Aligned_cols=93 Identities=9% Similarity=0.005 Sum_probs=54.7
Q ss_pred ceEEecCCcEEEEeec--C-ccc-----cCCCceEEEEECC--CCcEEEEeCCC----eEEEEcCCCCeeeeeec-----
Q 003171 397 NAIMGAADAVRRVAAK--G-GFG-----DDNRRTEALTTSI--DGMIWTGGANG----LLLQWDPNGNRLQDFQY----- 457 (842)
Q Consensus 397 ~~~~g~~~~v~~v~~~--g-~~~-----~~~~~v~al~~s~--dg~l~Sgs~Dg----tIrlWD~~g~~l~~l~~----- 457 (842)
.+++|+..|+.+.... | .+. -....|.+|+++| ++.||.++..| .|...+-.|+--+.+..
T Consensus 24 ~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~ 103 (394)
T 3b7f_A 24 MLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFN 103 (394)
T ss_dssp EEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCC
T ss_pred EEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCC
Confidence 3566666666655532 1 232 1234688999998 77898887665 45444333433222211
Q ss_pred ---------CCccEEEEEec----CCEEEEEecCcEEEEEeCCCc
Q 003171 458 ---------LPFAVQCLCTF----GSQIWVGYMNGIVQVLDLEGN 489 (842)
Q Consensus 458 ---------H~~~V~sls~d----G~~LasGs~DgtIrlWD~~g~ 489 (842)
+...|.+|+++ ...|++++..+.|...+-.|+
T Consensus 104 ~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~ 148 (394)
T 3b7f_A 104 KAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGA 148 (394)
T ss_dssp CCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTS
T ss_pred CcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCC
Confidence 11357778765 568898888888777765453
No 333
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=69.19 E-value=29 Score=37.10 Aligned_cols=69 Identities=16% Similarity=0.114 Sum_probs=46.5
Q ss_pred CceEEEEECCCCcEEEEeCCCeEEEEcCCCC-eeeeee---cCCccEEEEEec-----CCEEEEEec----C----cEEE
Q 003171 420 RRTEALTTSIDGMIWTGGANGLLLQWDPNGN-RLQDFQ---YLPFAVQCLCTF-----GSQIWVGYM----N----GIVQ 482 (842)
Q Consensus 420 ~~v~al~~s~dg~l~Sgs~DgtIrlWD~~g~-~l~~l~---~H~~~V~sls~d-----G~~LasGs~----D----gtIr 482 (842)
.....+++.|||.|+.+..+|.|+++|.+|+ .+..+. ......+.|+++ +.+|+++.. + ..|.
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 4467889999999998888899999987775 222211 112346677764 357777654 2 6788
Q ss_pred EEeCCC
Q 003171 483 VLDLEG 488 (842)
Q Consensus 483 lWD~~g 488 (842)
.|+.++
T Consensus 109 r~~~~~ 114 (354)
T 3a9g_A 109 RGRLDG 114 (354)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 887653
No 334
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=64.84 E-value=26 Score=40.85 Aligned_cols=103 Identities=10% Similarity=-0.030 Sum_probs=57.3
Q ss_pred EEECC-CCcE-EEEeCCC-----------eEEEEcC-CCCe--eeeeec-CCccEE--EEEecCCEEEEEe-cCcEEEEE
Q 003171 425 LTTSI-DGMI-WTGGANG-----------LLLQWDP-NGNR--LQDFQY-LPFAVQ--CLCTFGSQIWVGY-MNGIVQVL 484 (842)
Q Consensus 425 l~~s~-dg~l-~Sgs~Dg-----------tIrlWD~-~g~~--l~~l~~-H~~~V~--sls~dG~~LasGs-~DgtIrlW 484 (842)
.++.+ +|+| +.|+.+. .+.+||+ +++. +..+.. +..... ++..+|+.++.|+ .+..+++|
T Consensus 191 ~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~y 270 (656)
T 1k3i_A 191 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY 270 (656)
T ss_dssp EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred EEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEe
Confidence 34445 7774 5555432 5889999 5542 223321 222222 2335788888887 45689999
Q ss_pred eCCC-c--ccccccccccCEEEEEe-CCCEEEEEc-CC-----CCeeeccccC
Q 003171 485 DLEG-N--LLGGWVAHSSPVIKMAV-GAGYIFTLA-NH-----GGIRGWNVTS 527 (842)
Q Consensus 485 D~~g-~--~i~~l~gH~~~V~sla~-dg~~l~S~S-~D-----gtIrvWd~~~ 527 (842)
|... + .+..+......-.++.. +++.++.|+ .+ ..+.+||..+
T Consensus 271 d~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 271 DSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp EGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred cCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 9863 2 22222221122223334 888888888 45 4577777543
No 335
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=62.47 E-value=29 Score=38.49 Aligned_cols=113 Identities=20% Similarity=0.203 Sum_probs=64.5
Q ss_pred CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeee-----cCCCeEEEEEcCC---CCEEEEEeCCC
Q 003171 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-----GVSSVMCMVGDEA---SGVVWSGHRDG 213 (842)
Q Consensus 142 ~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~V~~la~dpd---g~~LaSGs~DG 213 (842)
++.|.+..+.+|.|-.+-....... ..+. .....+++..+. ...+|..+.|+|- +..|++=..|+
T Consensus 77 G~lLAl~g~~~V~Vv~LP~~~~~~~----~~~~---~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~ 149 (452)
T 3pbp_A 77 GDLLCLFNDNEIFVMEVPWGYSNVE----DVSI---QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDD 149 (452)
T ss_dssp SSEEEEECSSEEEEEECCTTCSCCC----CHHH---HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTS
T ss_pred CCEEEEecCCeEEEEEecCccccCc----cccc---ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCC
Confidence 4455567888999998863221110 0000 000111222221 0467999999995 46899999999
Q ss_pred cEEEEECCCCccCCCCCc--c---eeEEecccCCcEEEEEEecCCC-EEEee--CCCcE
Q 003171 214 RIMCWKMNARLLDSDDGF--G---EVLSWQAHRGPVLSLCISSYGD-LWSGS--EGGGI 264 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~--~---~~~~l~gH~~~V~slafs~dG~-L~SgS--~DgtI 264 (842)
+||+||+.... ..+. + ....+..+...|.+++|.++|- ||..+ ++|-|
T Consensus 150 ~Ir~yDl~~s~---~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDI 205 (452)
T 3pbp_A 150 TITMFDILNSQ---EKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDI 205 (452)
T ss_dssp CEEEEETTCTT---SCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEE
T ss_pred EEEEEEcccCC---CCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCE
Confidence 99999998742 0000 0 0011122335788999999774 66544 66654
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=58.63 E-value=15 Score=37.20 Aligned_cols=61 Identities=11% Similarity=-0.007 Sum_probs=42.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc-----cC---CcEEEEEEecCCCEEEeeCCCcEEE
Q 003171 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-----HR---GPVLSLCISSYGDLWSGSEGGGIKI 266 (842)
Q Consensus 195 ~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g-----H~---~~V~slafs~dG~L~SgS~DgtIrv 266 (842)
.++.|||+|.+.++ .||.|.-|+..+.. ...|.+ ++ +.+..|.|+|+|.|+... |+.+.-
T Consensus 91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~---------~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 91 QFLFFDPNGYLYAV--SKDKLYKASPPQSD---------TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp SEEEECTTSCEEEE--ETTEEEEESCCCST---------TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred eEEEECCCCCEEEe--CCCEEEEeCCCcCC---------CCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEe
Confidence 67999999988877 67999888764421 112211 01 468999999999999887 887543
Q ss_pred E
Q 003171 267 W 267 (842)
Q Consensus 267 W 267 (842)
+
T Consensus 159 ~ 159 (236)
T 1tl2_A 159 A 159 (236)
T ss_dssp E
T ss_pred c
Confidence 3
No 337
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=57.07 E-value=3.7e+02 Score=33.59 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=56.1
Q ss_pred eEEEEcC-CCCeeeeeec-CCccEEEEEe---c---CCEEEEEe----------cCcEEEEEeCC-Ccc--ccccccccc
Q 003171 441 LLLQWDP-NGNRLQDFQY-LPFAVQCLCT---F---GSQIWVGY----------MNGIVQVLDLE-GNL--LGGWVAHSS 499 (842)
Q Consensus 441 tIrlWD~-~g~~l~~l~~-H~~~V~sls~---d---G~~LasGs----------~DgtIrlWD~~-g~~--i~~l~gH~~ 499 (842)
.|++.|. +.+.+..+.- ....+.|++. . ..+|++|+ ..|.|.++++. +++ +.. +...+
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~-~~v~g 886 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE-KEVKG 886 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE-EEESS
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE-EEcCC
Confidence 5899998 6777766653 3445677642 2 35999988 34789999975 332 221 23467
Q ss_pred CEEEEE-eCCCEEEEEcCCCCeeeccccC
Q 003171 500 PVIKMA-VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 500 ~V~sla-~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+|++|. +.|..++.. .++|++|++..
T Consensus 887 ~v~al~~~~g~Lla~i--g~~l~vy~l~~ 913 (1158)
T 3ei3_A 887 AVYSMVEFNGKLLASI--NSTVRLYEWTT 913 (1158)
T ss_dssp CEEEEEEETTEEEEEE--TTEEEEEEECT
T ss_pred cCEEEeeeCCEEEEEc--CCEEEEEECCC
Confidence 899998 577555444 47899999864
No 338
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=55.55 E-value=91 Score=33.02 Aligned_cols=68 Identities=15% Similarity=0.058 Sum_probs=45.2
Q ss_pred CceEEEEECCCCcEEEEeCCCeEEEEcCCCCe--eeeee---cCCccEEEEEec-----CCEEEEEecC------cEEEE
Q 003171 420 RRTEALTTSIDGMIWTGGANGLLLQWDPNGNR--LQDFQ---YLPFAVQCLCTF-----GSQIWVGYMN------GIVQV 483 (842)
Q Consensus 420 ~~v~al~~s~dg~l~Sgs~DgtIrlWD~~g~~--l~~l~---~H~~~V~sls~d-----G~~LasGs~D------gtIrl 483 (842)
.....+++.|||.++.+..+|.|++++ +|+. +..+. ......+.|+++ +.+|+++... ..|..
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 345689999999999888889999998 5542 22111 112345667664 3577776652 67888
Q ss_pred EeCCC
Q 003171 484 LDLEG 488 (842)
Q Consensus 484 WD~~g 488 (842)
++..+
T Consensus 110 ~~~~~ 114 (352)
T 2ism_A 110 LRHLG 114 (352)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 88763
No 339
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=52.72 E-value=1.9e+02 Score=31.00 Aligned_cols=73 Identities=11% Similarity=0.167 Sum_probs=45.2
Q ss_pred EEEEEcCCCC--EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC-CCEEEeeCCCcEEEEeC
Q 003171 195 MCMVGDEASG--VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 195 ~~la~dpdg~--~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L~SgS~DgtIrvWd~ 269 (842)
.|+.-+|.++ +++....+|.+..|++.... +..-..+.++++.- .+.+-.++.++. |.|+.+-+|..|..++.
T Consensus 133 lcly~~~~~g~~yafV~~k~G~~~q~~l~~~~-~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da 208 (355)
T 3amr_A 133 FTLYHSQKTGKYYAMVTGKEGEFEQYELKADK-NGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSA 208 (355)
T ss_dssp EEEEECTTTCCEEEEEECSSSEEEEEEEEECT-TSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEEC
T ss_pred EEEEecCCCCcEEEEEECCCCeEEEEEEEeCC-CCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeC
Confidence 4555587543 68888899999999984210 00001133455543 346777888864 56999999976555453
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=50.80 E-value=2e+02 Score=29.78 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=50.1
Q ss_pred CeEEEEcCCCCeeeeeecCCccEEEEEecCCEEEEEe----cCcEEEEEeCCCcccccccccccCEEEEEeCCCEEEEEc
Q 003171 440 GLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGY----MNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLA 515 (842)
Q Consensus 440 gtIrlWD~~g~~l~~l~~H~~~V~sls~dG~~LasGs----~DgtIrlWD~~g~~i~~l~gH~~~V~sla~dg~~l~S~S 515 (842)
..|+..+++|.....+. ......++++|++|+-.. ....|..-++.|.-.+.+..|.. ..+.++++.|+..+
T Consensus 88 ~~Iy~i~~dg~~~~~l~--~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLD--PDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNN 163 (302)
T ss_dssp EEEEEEETTSCCCEEEE--CSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEEC
T ss_pred CeEEEEeCCCCcceEee--cCCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEe
Confidence 46788888765444443 234457888999888655 35577777888765555554433 34567888888776
Q ss_pred C-CCCeee
Q 003171 516 N-HGGIRG 522 (842)
Q Consensus 516 ~-DgtIrv 522 (842)
. ...|.+
T Consensus 164 ~g~~~Iy~ 171 (302)
T 3s25_A 164 PKNGQLYR 171 (302)
T ss_dssp TTTCCEEE
T ss_pred CCCceEEE
Confidence 6 344443
No 341
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=50.60 E-value=3e+02 Score=30.69 Aligned_cols=202 Identities=12% Similarity=0.192 Sum_probs=101.2
Q ss_pred cccccccc---cCCCCCCCceeecCCCCCcccc-----CceeEEEEecCC-EEE---------EecCCCEEEEeCCCCcc
Q 003171 102 MFKPPVRA---ALHPARPPSLEVKPHPLRETQI-----GCFLRTIVCTEE-QLW---------AGGENGLRVWNLKELYD 163 (842)
Q Consensus 102 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~-~l~---------~~~D~~vrvWdl~~~~~ 163 (842)
+-|+|+.| -|||..+ .+++|. -+..|+ -.-+.+....++ .+| +-++..|..|+++....
T Consensus 61 ~~rrpi~AdsAIMnP~~~-iiALra--g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~ 137 (494)
T 1bpo_A 61 PIRRPISADSAIMNPASK-VIALKA--GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQ 137 (494)
T ss_dssp CEEEECCCSEEEECSSSS-CEEEEE--TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCC
T ss_pred ceecccccceeeeCCCCc-EEEEec--CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCC
Confidence 34566655 5688765 477774 122111 112333333333 333 35788999999864211
Q ss_pred ccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe-------CCCcEEEEECCCCccCCCCCcceeEE
Q 003171 164 ESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH-------RDGRIMCWKMNARLLDSDDGFGEVLS 236 (842)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs-------~DGtIrlWdl~~g~~~~~~~~~~~~~ 236 (842)
+. +.-.|+. .+. ..-|..-..|++.++++--+ -.|.+.+++.+. +..+.
T Consensus 138 P~-----kvFdR~~---------~L~-~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er---------~~sQ~ 193 (494)
T 1bpo_A 138 PV-----KMFDRHS---------SLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---------KVSQP 193 (494)
T ss_dssp CE-----EEEECCG---------GGT-TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT---------CCEEE
T ss_pred ch-----hheecch---------hcc-cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc---------cccch
Confidence 10 0000111 122 34577777888888766432 236788999887 35667
Q ss_pred ecccCCcEEEEEEecCC---CEE-EeeC---CCcEEEEeCCCc-cceeecCCCceeeeEEEEeeceeecccceeccceee
Q 003171 237 WQAHRGPVLSLCISSYG---DLW-SGSE---GGGIKIWPWEAI-EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSS 308 (842)
Q Consensus 237 l~gH~~~V~slafs~dG---~L~-SgS~---DgtIrvWd~~t~-~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~ 308 (842)
+.||.+.-.++.+..+. .|+ -+.. .+.+.|-++... ... .+...... ++ ......
T Consensus 194 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~---~~f~kk~v---------dv--~fppe~--- 256 (494)
T 1bpo_A 194 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAV---------DV--FFPPEA--- 256 (494)
T ss_dssp ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC---CCCCCEEE---------EC--CCCTTS---
T ss_pred heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC---CCccceee---------ee--eCCccc---
Confidence 88997776655544332 232 2332 367777777432 000 00000000 00 000000
Q ss_pred eecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 309 ILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 309 ~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
...--.++..++.-+.+.--+ .+-|.++|+.||.++-.-
T Consensus 257 -~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 257 -QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp -TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred -ccCceeEEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence 011123344444444444444 567999999999987543
No 342
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=50.54 E-value=40 Score=37.13 Aligned_cols=72 Identities=7% Similarity=0.078 Sum_probs=48.6
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCCcEEEEeC
Q 003171 193 SVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIKIWPW 269 (842)
Q Consensus 193 ~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~DgtIrvWd~ 269 (842)
....++++| +|.++++-..++.|..++.+++. ........+ ...-..|+|+|+|+ |+ +-...+.|.+++.
T Consensus 227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~------~~~~~~~~~-~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~ 299 (430)
T 3tc9_A 227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQE------TTPLFTIQD-SGWEFHIQFHPSGNYAYIVVVNQHYILRSDY 299 (430)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEEETTTTE------EEEEEECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCCCc------EEEEEEcCC-CCcceeEEEcCCCCEEEEEECCCCEEEEEeC
Confidence 346788999 66766666677899999988751 001111112 23457899999998 65 5567789999887
Q ss_pred CC
Q 003171 270 EA 271 (842)
Q Consensus 270 ~t 271 (842)
+.
T Consensus 300 d~ 301 (430)
T 3tc9_A 300 DW 301 (430)
T ss_dssp ET
T ss_pred Cc
Confidence 53
No 343
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=50.04 E-value=1.1e+02 Score=32.46 Aligned_cols=88 Identities=7% Similarity=0.106 Sum_probs=54.3
Q ss_pred CCeEEEEcCC----CCeeeeee--cC----------C-ccEEEEEec--CCEEEEEecC-cEEEEEeCCCcccccccccc
Q 003171 439 NGLLLQWDPN----GNRLQDFQ--YL----------P-FAVQCLCTF--GSQIWVGYMN-GIVQVLDLEGNLLGGWVAHS 498 (842)
Q Consensus 439 DgtIrlWD~~----g~~l~~l~--~H----------~-~~V~sls~d--G~~LasGs~D-gtIrlWD~~g~~i~~l~gH~ 498 (842)
+..|..+|+. ++.+.... .. . ...+.++.| |..-++++.. +.|...|..|+.+..|....
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~ 178 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWES 178 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC
Confidence 5678889987 65543332 11 1 135667664 6666667778 88888888887544443211
Q ss_pred c------CEEEEE--eCCCEEEEEcCCCCeeecccc
Q 003171 499 S------PVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 499 ~------~V~sla--~dg~~l~S~S~DgtIrvWd~~ 526 (842)
. ..+.|+ +|+..|+.....+.+..+|+.
T Consensus 179 ~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 179 GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 1 133555 578777766558888777765
No 344
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.00 E-value=53 Score=40.36 Aligned_cols=34 Identities=9% Similarity=0.059 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL 224 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~ 224 (842)
.+.+.+++..++...|+|=+.|+++|+|++.++.
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCC
Confidence 4467888888888999999999999999999984
No 345
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=42.80 E-value=1.6e+02 Score=31.39 Aligned_cols=71 Identities=11% Similarity=0.070 Sum_probs=44.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe----cccCCcEEEEEEecC----CCEEE---eeCC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW----QAHRGPVLSLCISSY----GDLWS---GSEG 261 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l----~gH~~~V~slafs~d----G~L~S---gS~D 261 (842)
....|++.|+|+++++--..|+|++++..++. ...+..+ ....+....|+|+|+ |.|+. ...+
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~------~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGR------KTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCC------EEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCc------EeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 45789999999877765558999998765542 0112111 123567899999995 66643 2334
Q ss_pred CcEEEEeC
Q 003171 262 GGIKIWPW 269 (842)
Q Consensus 262 gtIrvWd~ 269 (842)
+.|--|.+
T Consensus 107 ~~v~R~~~ 114 (347)
T 3das_A 107 NRIVRMLY 114 (347)
T ss_dssp EEEEEEEB
T ss_pred CEEEEEEe
Confidence 44444444
No 346
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=42.28 E-value=3.5e+02 Score=28.94 Aligned_cols=172 Identities=11% Similarity=0.117 Sum_probs=0.0
Q ss_pred CceeEEEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 132 GCFLRTIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 132 ~~~~~~l~~~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
++++ +.+.|-+-++..|..|+++....+ ...-.-...+. ..-|..-..|++.++++--+-
T Consensus 112 WkWi-----s~~~L~lVT~taVyHWs~~~~s~P--------------~kvFdR~~~L~-~~QIInY~~d~~~kW~~l~GI 171 (365)
T 2xzh_A 112 WKWI-----SLNTVALVTDNAVYHWSMEGESQP--------------VKMFDRHSSLA-GCQIINYRTDAKQKWLLLTGI 171 (365)
T ss_dssp EEEC-----SSSEEEEEESSEEEEEESSTTCCC--------------EEEEECCGGGT-TCEEEEEEECTTSCEEEEEEE
T ss_pred EEec-----CCCeEEEEcCCcEEEEcccCCCCC--------------ceeeecchhcc-cceEEEEEECCCCCEEEEEeE
Q ss_pred C-------CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC---EEE----eeCCCcEEEEeCCCc-----
Q 003171 212 D-------GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWS----GSEGGGIKIWPWEAI----- 272 (842)
Q Consensus 212 D-------GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~---L~S----gS~DgtIrvWd~~t~----- 272 (842)
- |.+.++..+. +..+.+.||.+.-..+.+..+.. |+. +...+.+.|-++...
T Consensus 172 ~~~~~~v~G~mQLYS~er---------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~ 242 (365)
T 2xzh_A 172 SAQQNRVVGAMQLYSVDR---------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ 242 (365)
T ss_dssp EEETTEEEEEEEEEETTT---------TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCC
T ss_pred eccCCccceeEEEEeecc---------cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCC
Q ss_pred ---cceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEee
Q 003171 273 ---EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (842)
Q Consensus 273 ---~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~ 349 (842)
++...+.-.+.... .-.+-.-.+..-+-.......+-|.++|++||.++-.-.
T Consensus 243 ~f~kk~vdi~fppea~~------------------------DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nr 298 (365)
T 2xzh_A 243 PFPKKAVDVFFPPEAQN------------------------DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 298 (365)
T ss_dssp CCCCEEEEECCCTTCTT------------------------CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CcccccceeeCCccccC------------------------CceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEec
Q ss_pred cCCceEe
Q 003171 350 IDGQIEN 356 (842)
Q Consensus 350 ~~~~~~~ 356 (842)
......+
T Consensus 299 IS~d~iF 305 (365)
T 2xzh_A 299 ISGETIF 305 (365)
T ss_dssp CCSSCEE
T ss_pred cCCCceE
No 347
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=42.16 E-value=1.6e+02 Score=37.67 Aligned_cols=100 Identities=11% Similarity=0.192 Sum_probs=56.0
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE-------eCCCcEEEEEC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG-------HRDGRIMCWKM 220 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG-------s~DGtIrlWdl 220 (842)
-++..|..|++.....+. +.-.|+ .++. ..-|..-..|++.++++-- .-.|.+.+++.
T Consensus 122 VT~~aVyHW~~~~~s~P~-----k~fdR~---------~~L~-~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~ 186 (1630)
T 1xi4_A 122 VTDNAVYHWSMEGESQPV-----KMFDRH---------SSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 186 (1630)
T ss_pred EcCCeEEEeccCCCCccH-----HHHhcc---------hhcc-cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeec
Confidence 578899999996421111 000111 1122 3456667778888776632 24578889988
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecC---CCEEE----eeCCCcEEEEeCCC
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSY---GDLWS----GSEGGGIKIWPWEA 271 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d---G~L~S----gS~DgtIrvWd~~t 271 (842)
+.+ ..+.+.||.+.-..+.+..+ ..|++ ...++.+.|-++..
T Consensus 187 er~---------~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~ 235 (1630)
T 1xi4_A 187 DRK---------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (1630)
T ss_pred ccc---------cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCC
Confidence 773 45567888776655544322 12321 12246777777643
No 348
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=39.08 E-value=2e+02 Score=31.71 Aligned_cols=58 Identities=7% Similarity=0.106 Sum_probs=36.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc------cCCcEEEEEEec----CCCEE
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA------HRGPVLSLCISS----YGDLW 256 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g------H~~~V~slafs~----dG~L~ 256 (842)
....|+++|+|+++++-...+.|++++..++. ...+..+.. ..+....|+|+| ++.|+
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~------~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lY 95 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGS------VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY 95 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCC------EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCc------EeEEecCCccccccCCCCceeEEEECCCcCcCCEEE
Confidence 45689999999876664433478888765442 122222221 246788999999 46664
No 349
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=37.88 E-value=6.7 Score=43.97 Aligned_cols=18 Identities=50% Similarity=0.999 Sum_probs=15.6
Q ss_pred CcCcccEEEEeccceeee
Q 003171 758 ELSEADMVIFLGDFNYRL 775 (842)
Q Consensus 758 ~~~~~d~vf~~GDlNyRi 775 (842)
.|.+++.|||=||||||=
T Consensus 373 ~L~~S~LVIFKGDLNYRK 390 (471)
T 3pt1_A 373 DLQKSNLVIFKGDLNYRK 390 (471)
T ss_dssp HHTTCSEEEEEHHHHHHH
T ss_pred HHhhCcEEEEecchhhhh
Confidence 357889999999999993
No 350
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=35.69 E-value=1.4e+02 Score=32.00 Aligned_cols=70 Identities=13% Similarity=0.016 Sum_probs=44.8
Q ss_pred CCeEEEEEcCCCCEEEEEe---CC------------CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E
Q 003171 192 SSVMCMVGDEASGVVWSGH---RD------------GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L 255 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs---~D------------GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L 255 (842)
.....++++++|+..++.. .| ..-++|..+.+ + ...+...-..-+.|+|||||+ |
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--------~-~~~~~~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--------D-VRVVAEGFDFANGINISPDGKYV 235 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--------C-CEEEEEEESSEEEEEECTTSSEE
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--------e-EEEeecCCcccCcceECCCCCEE
Confidence 4577899999988777654 12 23455555443 1 112222223458899999997 5
Q ss_pred E-EeeCCCcEEEEeCC
Q 003171 256 W-SGSEGGGIKIWPWE 270 (842)
Q Consensus 256 ~-SgS~DgtIrvWd~~ 270 (842)
+ +-+..+.|.+|+++
T Consensus 236 Yvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 236 YIAELLAHKIHVYEKH 251 (355)
T ss_dssp EEEEGGGTEEEEEEEC
T ss_pred EEEeCCCCeEEEEEEC
Confidence 4 56677899999885
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=34.31 E-value=2.2e+02 Score=30.20 Aligned_cols=92 Identities=12% Similarity=0.073 Sum_probs=50.3
Q ss_pred CCCcEEEEeCCCeEEEEcC-C-CCeeeeee--cCCccEEEEEec---CCEEEEEecCc----EEEEEeCCCcc---ccc-
Q 003171 429 IDGMIWTGGANGLLLQWDP-N-GNRLQDFQ--YLPFAVQCLCTF---GSQIWVGYMNG----IVQVLDLEGNL---LGG- 493 (842)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~-g~~l~~l~--~H~~~V~sls~d---G~~LasGs~Dg----tIrlWD~~g~~---i~~- 493 (842)
.++.||.|+..| +.+.+. . |+..+.+. .....|.+|+.| ...||+|+..| .|...+-.|+. +..
T Consensus 21 ~~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 21 GPVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRP 99 (394)
T ss_dssp SCCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBC
T ss_pred CCCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCcc
Confidence 356799999887 444443 2 33333221 224578999876 46888888776 66655433432 211
Q ss_pred --ccc--------cccCEEEEEeC----CCEEEEEcCCCCee
Q 003171 494 --WVA--------HSSPVIKMAVG----AGYIFTLANHGGIR 521 (842)
Q Consensus 494 --l~g--------H~~~V~sla~d----g~~l~S~S~DgtIr 521 (842)
+.. +...|.+|+.+ ++.++.++..+.|.
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~ 141 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLF 141 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEE
Confidence 111 12357778764 55666555555443
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.65 E-value=1e+02 Score=37.80 Aligned_cols=37 Identities=8% Similarity=0.053 Sum_probs=27.1
Q ss_pred CEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEee
Q 003171 313 DIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (842)
Q Consensus 313 ~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~ 349 (842)
.+.+++..++...+++-. |.++|+|++.+|+++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 345555555666776655 7899999999999987653
No 353
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=31.68 E-value=81 Score=33.54 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe---cccCCcEEEEEEecC----CCEEE
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW---QAHRGPVLSLCISSY----GDLWS 257 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l---~gH~~~V~slafs~d----G~L~S 257 (842)
....|+++|+|+ |+.+..+|.|++++. ++. .....+ ..-.+....|+|+|+ |.|+.
T Consensus 30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~-------~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv 92 (354)
T 3a9g_A 30 VPWSIAPLGGGR-YLVTERPGRLVLISP-SGK-------KLVASFDVANVGEAGLLGLALHPEFPKKSWVYL 92 (354)
T ss_dssp CEEEEEEEETTE-EEEEETTTEEEEECS-SCE-------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred CCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc-------eEeeccceeecCCCceeeEEeCCCCCcCCEEEE
Confidence 456899999987 555677799988863 330 122211 112356789999997 66753
No 354
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=30.97 E-value=2.5e+02 Score=29.03 Aligned_cols=89 Identities=11% Similarity=0.050 Sum_probs=50.0
Q ss_pred EEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEecCCEEEEEecC--cEEEEEeCCCcccccccccccCEEEEEeCCCEE
Q 003171 434 WTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMN--GIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYI 511 (842)
Q Consensus 434 ~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~dG~~LasGs~D--gtIrlWD~~g~~i~~l~gH~~~V~sla~dg~~l 511 (842)
|+......|.+-+++|...+.+...... ..+.|+|.+|+-...+ ..|..-++.|.-.+.+. +..+.++++++++|
T Consensus 161 ~t~~g~~~Iy~~~l~g~~~~~l~~~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt--~~~~~~~~~~g~~I 237 (302)
T 3s25_A 161 YNNPKNGQLYRYDTASQSEALFYDCNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT--EANIEHYNVYGSLI 237 (302)
T ss_dssp EECTTTCCEEEEETTTTEEEEEECSCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECS--CSCEEEEEEETTEE
T ss_pred EEeCCCceEEEEECCCCCEEEEeCCCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEe--CCCcceEEECCCEE
Confidence 3433355677777766444444322221 2355788877655433 36777788765444443 23456688888888
Q ss_pred EEEcCCCCeeeccc
Q 003171 512 FTLANHGGIRGWNV 525 (842)
Q Consensus 512 ~S~S~DgtIrvWd~ 525 (842)
++++..+.=.|+.+
T Consensus 238 y~~~~~~~~~i~~~ 251 (302)
T 3s25_A 238 FYQRGGDNPALCVV 251 (302)
T ss_dssp EEEECSSSCEEEEE
T ss_pred EEEECCCCcEEEEE
Confidence 87643323344443
No 355
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=30.59 E-value=2.4e+02 Score=29.64 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=42.6
Q ss_pred ceEEEEECCCCc-EEEEeCCCeEEEEcCCCCeeeeee-------cCCccEEEEEec-----CCEEEEEec--------Cc
Q 003171 421 RTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQ-------YLPFAVQCLCTF-----GSQIWVGYM--------NG 479 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~l~~l~-------~H~~~V~sls~d-----G~~LasGs~--------Dg 479 (842)
....+++.|||. |+.+...|.|++++.+|.....+. ......+.|+++ +.+|+.... ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 356789999999 999999999999987664322111 112345666654 456666543 23
Q ss_pred EEEEEeCC
Q 003171 480 IVQVLDLE 487 (842)
Q Consensus 480 tIrlWD~~ 487 (842)
.|..|+.+
T Consensus 99 ~v~r~~~~ 106 (353)
T 2g8s_A 99 AVGYGRLS 106 (353)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 56666654
No 356
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=25.58 E-value=1.7e+02 Score=31.35 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=40.5
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec-CCCEEEee
Q 003171 193 SVMCMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGDLWSGS 259 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs-~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~L~SgS 259 (842)
--..+++|||++.|+.+. ..+.|..|++... ........+ .-.+..-.+++++ +|.||.+.
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~-----g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKHAN-----WTLTPLRVL-SFDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-----SCEEEEEEE-ECSSEEEEEEECTTTCCEEEEE
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEECCC-----CcEecCEEE-eCCCCCceEEEeCCCCcEEEEe
Confidence 456799999998777765 5678999988642 111222233 2245667889999 59988754
No 357
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=25.56 E-value=1.1e+02 Score=38.35 Aligned_cols=103 Identities=15% Similarity=0.062 Sum_probs=0.0
Q ss_pred ccCCcEEEEEEecCCCEEEeeCCCcEEE-EeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEE
Q 003171 239 AHRGPVLSLCISSYGDLWSGSEGGGIKI-WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNL 317 (842)
Q Consensus 239 gH~~~V~slafs~dG~L~SgS~DgtIrv-Wd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~l 317 (842)
+.+.|-.-.+.+++--+++-.++|.+|+ |+-..+...-....+......+ +.+....+.....+. .+.+.++
T Consensus 171 ~~r~Ph~L~avs~~~lvVsL~DGgLLrL~r~~~d~~~~~~~f~~~s~l~sL---~~l~~~~~~~~~~~~----~~~~vs~ 243 (1139)
T 4fhn_B 171 LNQKPDLMAAISTSEICVSFFNGGLTKIILNPKDASHYEQHIDDSSYLFSL---KKYLSLQAFKADYRS----PNTIISM 243 (1139)
T ss_dssp TTSCEEEEEECCSSEEEEEETTSCEEEEEEETTEEEEEEEC------------------------CCCC----TTCBSCC
T ss_pred cCCCceEEEEEcCCcEEEEECCCCEEEEEecCCCCCCceeeecCCcHHhhh---hhhcccccCCccCCC----cceeEEe
Q ss_pred EEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 318 LSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 318 as~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
+...+...+++-. |.++|+||+.+++|+.+.
T Consensus 244 ~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 244 IFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp EEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eccCCccEEEEEeCCCEEEEEECCCCCeEEee
No 358
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=20.88 E-value=7e+02 Score=27.16 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=37.8
Q ss_pred CceEEEEECCCCcEEEEeCCC-eEEEEcC-CCCe--eeeeec------CCccEEEEEec-----CCEEEEEec
Q 003171 420 RRTEALTTSIDGMIWTGGANG-LLLQWDP-NGNR--LQDFQY------LPFAVQCLCTF-----GSQIWVGYM 477 (842)
Q Consensus 420 ~~v~al~~s~dg~l~Sgs~Dg-tIrlWD~-~g~~--l~~l~~------H~~~V~sls~d-----G~~LasGs~ 477 (842)
....++++.|||+|+.+...+ .|++++. +|+. +..+.. .....+.|+++ +.+|+....
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 345689999999999888876 6988887 4543 222221 13456677665 567776654
No 359
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=20.81 E-value=89 Score=36.87 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=13.5
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCee
Q 003171 430 DGMIWTGGANGLLLQWDP-NGNRL 452 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l 452 (842)
+..+++-+.|+++|+||+ +++++
T Consensus 231 ~~fLftL~~Dh~LRiWsL~t~~lv 254 (729)
T 3f7f_A 231 ERYLIVLTQNCHLKIWDLTSFTLI 254 (729)
T ss_dssp TTEEEEEETTCEEEEEETTTTEEE
T ss_pred CcEEEEEEcCCeEEEEEcCCCceE
Confidence 444666666666666666 44443
No 360
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=20.47 E-value=1.4e+02 Score=33.49 Aligned_cols=76 Identities=7% Similarity=0.032 Sum_probs=46.2
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECC-------CCccCCC---C---CcceeEEecccCCcEEEEEEecCCC-EE-Ee
Q 003171 195 MCMVGDEA-SGVVWSGHRDGRIMCWKMN-------ARLLDSD---D---GFGEVLSWQAHRGPVLSLCISSYGD-LW-SG 258 (842)
Q Consensus 195 ~~la~dpd-g~~LaSGs~DGtIrlWdl~-------~g~~~~~---~---~~~~~~~l~gH~~~V~slafs~dG~-L~-Sg 258 (842)
..++++|+ +.++++-..++.|..+|+. ++...+. . .++.+... +....-+.|+|+|+|. |+ +=
T Consensus 250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD 328 (496)
T 3kya_A 250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGV 328 (496)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEE
T ss_pred eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEe
Confidence 46788995 5555566677889999987 4410000 0 01122222 2234457899999998 55 55
Q ss_pred eCCCcEEEEeCCC
Q 003171 259 SEGGGIKIWPWEA 271 (842)
Q Consensus 259 S~DgtIrvWd~~t 271 (842)
+....|+.++.+.
T Consensus 329 ~~~h~I~kid~dg 341 (496)
T 3kya_A 329 INNHYFMRSDYDE 341 (496)
T ss_dssp TTTTEEEEEEEET
T ss_pred CCCCEEEEEecCC
Confidence 6678888877643
No 361
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=20.25 E-value=7.7e+02 Score=25.93 Aligned_cols=69 Identities=7% Similarity=0.069 Sum_probs=43.5
Q ss_pred CCceEEEEECCCCcEEEEeC-CCeEEEEcC-CCCe--eeee----ecCCccEEEEEec-----CCEEEEEe---cCcEEE
Q 003171 419 NRRTEALTTSIDGMIWTGGA-NGLLLQWDP-NGNR--LQDF----QYLPFAVQCLCTF-----GSQIWVGY---MNGIVQ 482 (842)
Q Consensus 419 ~~~v~al~~s~dg~l~Sgs~-DgtIrlWD~-~g~~--l~~l----~~H~~~V~sls~d-----G~~LasGs---~DgtIr 482 (842)
......+++.|||.++.+.. .|.|++++. .|+. +..+ .......+.|+++ ..+|+... .+..|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34567899999999988887 899999987 4543 2111 1223456677764 34566543 345566
Q ss_pred EEeCC
Q 003171 483 VLDLE 487 (842)
Q Consensus 483 lWD~~ 487 (842)
-|...
T Consensus 111 R~~~~ 115 (347)
T 3das_A 111 RMLYD 115 (347)
T ss_dssp EEEBC
T ss_pred EEEeC
Confidence 66554
Done!