BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003172
(842 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DIP|A Chain A, Solution Structure Of The Zz Domain Of Zinc Finger Swim
Domain Containing Protein 2
Length = 98
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 15/69 (21%)
Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRG 436
H G+ C+ C PI G +K +Y LC CF D H H FR
Sbjct: 29 HLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECF------------DSYCHLSHTFTFR- 75
Query: 437 LYDHRQNFW 445
+ R W
Sbjct: 76 --EKRNQKW 82
>pdb|1OPI|A Chain A, Solution Structure Of The Third Rna Recognition Motif
(Rrm) Of U2af65 In Complex With An N-Terminal Sf1
Peptide
pdb|2M0G|B Chain B, Structure, Phosphorylation And U2af65 Binding Of The
Nterminal Domain Of Splicing Factor 1 During 3 Splice
Site Recognition
Length = 104
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 532 SVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDP 589
S+EI P DGV V G I V+FT+ + M +G KF RV V DP
Sbjct: 43 SIEIPRPVDGVEVPGCGKIFVEFTSV-----FDCQKAMQGLTGRKFANRVVVTKYCDP 95
>pdb|1O0P|A Chain A, Solution Structure Of The Third Rna Recognition Motif
(Rrm) Of U2af65 In Complex With An N-Terminal Sf1
Peptide
Length = 104
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 532 SVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDP 589
S+EI P DGV V G I V+FT+ + M +G KF RV V DP
Sbjct: 43 SIEIPRPVDGVEVPGCGKIFVEFTSV-----FDCQKAMQGLTGRKFANRVVVTKYCDP 95
>pdb|2W3R|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3S|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W54|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W55|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
Length = 462
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 328 RTADLGGNLSTNCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMFHKGVRCDGCGV 387
+ A +GGN++ P P A + G+S RRG +R + + K R G V
Sbjct: 277 QVATIGGNIANGSPIGDGPPALIAMGASLTLRRGQERRRMPLEDFFLEYRKQDRRPGEFV 336
Query: 388 HPITGPR-------FKSKVKDDYDLCSIC 409
+T P+ +K + D D+ ++C
Sbjct: 337 ESVTLPKSAPGLRCYKLSKRFDQDISAVC 365
>pdb|2FC7|A Chain A, Solution Structure Of The Zz Domain Of Zzz3 Protein
Length = 82
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 377 HKGVRCDGCGVHPITGPRFKSK---VKDDYDLCSICFAAMGSEADYIRIDRPVH--YRHP 431
H G +CD CG+ PI G R+ + + D C C + E D + D + YR
Sbjct: 19 HVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCL-HETDIHKEDHQLEPIYRSS 77
Query: 432 RPFRG 436
P G
Sbjct: 78 GPSSG 82
>pdb|2O70|A Chain A, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|B Chain B, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|C Chain C, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|D Chain D, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|E Chain E, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|F Chain F, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O73|A Chain A, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|B Chain B, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|C Chain C, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|D Chain D, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|E Chain E, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|F Chain F, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O74|A Chain A, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|B Chain B, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|C Chain C, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|D Chain D, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|E Chain E, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|F Chain F, Structure Of Ohcu Decarboxylase In Complex With Guanine
Length = 174
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 93 FGKAYARSSGSSTPLRSPRIQHPLPDIDSKISEILKSVPEPLREAISKLSTDVASK 148
FG + S + S R L DI+++ISE + S+P+ +E I + D+A +
Sbjct: 18 FGNVVEKCPLISAAIWSYRPFKDLADIEARISEFIHSLPDSGKEGILRCHPDLAGR 73
>pdb|1JRO|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRP|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|C Chain C, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|E Chain E, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|G Chain G, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
Length = 462
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 328 RTADLGGNLSTNCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMFHKGVRCDGCGV 387
+ A +GGN++ P P A + G+S RRG +R + + K R G V
Sbjct: 277 QVATIGGNIANGSPIGDGPPALIAMGASLTLRRGQERRRMPLEDFFLEYRKQDRRPGEFV 336
Query: 388 HPITGPR-------FKSKVKDDYDLCSIC 409
+T P+ +K + D D+ ++C
Sbjct: 337 ESVTLPKSAPGLRCYKLSKRFDQDISAVC 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,581,652
Number of Sequences: 62578
Number of extensions: 1049756
Number of successful extensions: 2203
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2200
Number of HSP's gapped (non-prelim): 10
length of query: 842
length of database: 14,973,337
effective HSP length: 107
effective length of query: 735
effective length of database: 8,277,491
effective search space: 6083955885
effective search space used: 6083955885
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)