Query 003172
Match_columns 842
No_of_seqs 275 out of 742
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 18:24:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06398 PB1_Joka2 The PB1 doma 99.8 3.1E-20 6.6E-25 168.0 11.3 85 5-90 1-90 (91)
2 cd06401 PB1_TFG The PB1 domain 99.7 6.7E-17 1.5E-21 143.5 9.3 77 5-86 1-80 (81)
3 cd06397 PB1_UP1 Uncharacterize 99.6 4.7E-16 1E-20 137.6 8.2 66 5-77 1-66 (82)
4 KOG4351 Uncharacterized conser 99.6 6.1E-16 1.3E-20 158.9 6.0 110 478-591 74-194 (244)
5 cd02344 ZZ_HERC2 Zinc finger, 99.4 1.5E-13 3.3E-18 110.3 3.3 43 380-422 1-45 (45)
6 cd02342 ZZ_UBA_plant Zinc fing 99.4 1.7E-13 3.7E-18 108.8 2.8 43 380-422 1-43 (43)
7 cd06407 PB1_NLP A PB1 domain i 99.3 6.9E-12 1.5E-16 111.9 9.9 77 5-87 1-81 (82)
8 smart00666 PB1 PB1 domain. Pho 99.3 7.3E-12 1.6E-16 108.6 9.5 76 4-86 1-80 (81)
9 PF00564 PB1: PB1 domain; Int 99.3 1.1E-11 2.4E-16 107.5 10.6 78 4-88 1-83 (84)
10 KOG4582 Uncharacterized conser 99.3 1.5E-12 3.3E-17 138.5 5.4 117 370-528 138-261 (278)
11 cd06396 PB1_NBR1 The PB1 domai 99.3 1.9E-11 4.2E-16 109.2 10.0 76 5-87 1-79 (81)
12 cd02339 ZZ_Mind_bomb Zinc fing 99.3 2.4E-12 5.2E-17 103.3 3.4 43 380-422 1-45 (45)
13 KOG4351 Uncharacterized conser 99.3 3.1E-12 6.7E-17 132.0 5.1 207 472-742 37-244 (244)
14 cd06402 PB1_p62 The PB1 domain 99.3 2.8E-11 6.2E-16 109.4 10.3 80 5-88 1-86 (87)
15 cd05992 PB1 The PB1 domain is 99.3 2.6E-11 5.6E-16 104.6 9.5 76 5-86 1-80 (81)
16 cd02340 ZZ_NBR1_like Zinc fing 99.2 1.5E-11 3.3E-16 97.7 3.2 42 380-422 1-43 (43)
17 PF00569 ZZ: Zinc finger, ZZ t 99.1 2.4E-11 5.3E-16 97.4 2.5 44 376-419 1-46 (46)
18 cd02341 ZZ_ZZZ3 Zinc finger, Z 99.1 3.4E-11 7.4E-16 98.0 3.3 43 380-422 1-48 (48)
19 cd02334 ZZ_dystrophin Zinc fin 99.1 3.5E-11 7.5E-16 98.3 3.0 41 380-420 1-47 (49)
20 cd06404 PB1_aPKC PB1 domain is 99.1 3.4E-10 7.4E-15 101.5 9.3 77 5-87 1-81 (83)
21 cd06403 PB1_Par6 The PB1 domai 99.1 5.2E-10 1.1E-14 99.5 9.0 76 5-87 1-78 (80)
22 cd02338 ZZ_PCMF_like Zinc fing 99.0 1.4E-10 3.1E-15 94.4 3.2 41 380-420 1-47 (49)
23 cd02345 ZZ_dah Zinc finger, ZZ 99.0 2.7E-10 5.8E-15 92.9 2.5 41 380-420 1-47 (49)
24 cd02343 ZZ_EF Zinc finger, ZZ 98.9 1.2E-09 2.7E-14 89.1 2.6 39 380-419 1-45 (48)
25 cd06408 PB1_NoxR The PB1 domai 98.8 7.1E-09 1.5E-13 93.8 7.4 64 4-76 2-65 (86)
26 cd02335 ZZ_ADA2 Zinc finger, Z 98.8 2.7E-09 5.9E-14 86.7 3.5 41 381-421 2-48 (49)
27 cd02249 ZZ Zinc finger, ZZ typ 98.8 2.9E-09 6.3E-14 85.2 3.4 42 380-422 1-46 (46)
28 smart00291 ZnF_ZZ Zinc-binding 98.8 3.4E-09 7.4E-14 84.3 3.3 36 376-412 1-36 (44)
29 KOG1280 Uncharacterized conser 98.7 7.9E-09 1.7E-13 112.1 3.0 53 375-427 4-62 (381)
30 cd02337 ZZ_CBP Zinc finger, ZZ 98.7 1.1E-08 2.4E-13 80.9 2.2 40 381-422 2-41 (41)
31 KOG4286 Dystrophin-like protei 98.1 1.1E-06 2.5E-11 102.6 1.5 53 374-427 599-657 (966)
32 cd06409 PB1_MUG70 The MUG70 pr 98.0 2.5E-05 5.4E-10 71.1 9.1 75 6-87 4-84 (86)
33 cd06406 PB1_P67 A PB1 domain i 97.9 5.8E-05 1.3E-09 68.0 7.9 71 5-84 3-75 (80)
34 KOG4301 Beta-dystrobrevin [Cyt 97.8 3.5E-06 7.7E-11 91.9 -1.6 39 373-412 235-273 (434)
35 KOG0457 Histone acetyltransfer 97.3 0.0001 2.2E-09 82.9 2.1 45 379-424 14-65 (438)
36 PF00627 UBA: UBA/TS-N domain; 97.0 0.00084 1.8E-08 51.5 3.6 35 731-766 3-37 (37)
37 cd02336 ZZ_RSC8 Zinc finger, Z 96.6 0.0015 3.2E-08 53.2 2.5 33 380-413 1-33 (45)
38 COG5114 Histone acetyltransfer 96.3 0.0014 3E-08 71.7 1.3 46 379-424 5-56 (432)
39 cd06410 PB1_UP2 Uncharacterize 96.2 0.025 5.4E-07 52.7 8.7 61 8-76 16-80 (97)
40 KOG3606 Cell polarity protein 96.0 0.0089 1.9E-07 64.6 5.1 84 3-91 17-100 (358)
41 cd06395 PB1_Map2k5 PB1 domain 95.8 0.022 4.8E-07 51.9 5.9 61 5-73 3-64 (91)
42 cd00194 UBA Ubiquitin Associat 95.3 0.026 5.6E-07 43.0 4.0 36 731-767 2-37 (38)
43 cd06399 PB1_P40 The PB1 domain 94.9 0.066 1.4E-06 49.5 6.1 46 28-76 26-71 (92)
44 smart00165 UBA Ubiquitin assoc 94.7 0.04 8.6E-07 41.8 3.7 35 731-766 2-36 (37)
45 PF07705 CARDB: CARDB; InterP 93.7 0.18 3.9E-06 44.3 6.2 68 489-564 11-78 (101)
46 cd06411 PB1_p51 The PB1 domain 93.7 0.35 7.5E-06 44.0 8.0 65 18-85 7-74 (78)
47 KOG0695 Serine/threonine prote 92.4 0.48 1E-05 53.4 8.3 79 4-88 15-97 (593)
48 KOG2561 Adaptor protein NUB1, 91.7 0.16 3.6E-06 58.3 4.0 61 728-789 373-446 (568)
49 PF14874 PapD-like: Flagellar- 91.2 2.2 4.8E-05 38.4 10.0 77 492-574 15-91 (102)
50 PF14646 MYCBPAP: MYCBP-associ 89.9 1.4 3.1E-05 50.2 9.4 87 494-586 244-340 (426)
51 PF07649 C1_3: C1-like domain; 88.7 0.24 5.2E-06 36.6 1.4 28 381-410 2-30 (30)
52 PF10633 NPCBM_assoc: NPCBM-as 88.0 3.5 7.7E-05 36.0 8.5 73 493-569 1-75 (78)
53 cd01812 BAG1_N Ubiquitin-like 80.6 4 8.6E-05 34.4 5.4 58 5-74 1-58 (71)
54 PF03107 C1_2: C1 domain; Int 77.7 1.5 3.2E-05 32.7 1.6 27 381-409 2-29 (30)
55 smart00546 CUE Domain that may 74.7 4.6 0.0001 31.9 3.8 37 731-768 3-41 (43)
56 PF02845 CUE: CUE domain; Int 74.0 5.3 0.00012 31.5 4.0 35 731-766 2-38 (42)
57 smart00213 UBQ Ubiquitin homol 70.3 11 0.00024 30.5 5.2 56 6-73 2-57 (64)
58 KOG1778 CREB binding protein/P 69.0 2.3 5.1E-05 47.5 1.3 43 379-423 169-211 (319)
59 cd01789 Alp11_N Ubiquitin-like 67.2 27 0.00058 31.5 7.5 61 4-71 3-64 (84)
60 PF11543 UN_NPL4: Nuclear pore 64.2 12 0.00026 33.9 4.6 50 1-58 1-50 (80)
61 PF09288 UBA_3: Fungal ubiquit 63.3 7.8 0.00017 33.4 3.1 45 730-779 9-53 (55)
62 PF14560 Ubiquitin_2: Ubiquiti 61.8 43 0.00094 30.0 7.7 61 5-70 2-64 (87)
63 PF09379 FERM_N: FERM N-termin 61.3 27 0.00058 30.2 6.2 60 12-77 5-65 (80)
64 PF02309 AUX_IAA: AUX/IAA fami 59.9 3 6.4E-05 43.6 0.0 73 5-85 110-203 (215)
65 cd01813 UBP_N UBP ubiquitin pr 59.6 22 0.00047 31.4 5.3 59 5-74 1-61 (74)
66 PF11976 Rad60-SLD: Ubiquitin- 58.0 47 0.001 28.2 7.0 49 5-58 1-49 (72)
67 COG1470 Predicted membrane pro 52.6 1.1E+02 0.0023 36.6 10.6 103 476-583 373-480 (513)
68 cd01803 Ubiquitin Ubiquitin. U 51.9 41 0.00089 28.5 5.7 71 5-88 3-73 (76)
69 COG2967 ApaG Uncharacterized p 51.1 84 0.0018 31.3 8.2 93 478-578 13-111 (126)
70 PF11325 DUF3127: Domain of un 49.9 44 0.00095 31.1 5.8 49 511-569 32-83 (84)
71 cd06405 PB1_Mekk2_3 The PB1 do 49.2 1.2E+02 0.0025 28.2 8.2 72 5-87 1-77 (79)
72 cd01809 Scythe_N Ubiquitin-lik 47.1 70 0.0015 26.8 6.3 57 5-74 3-59 (72)
73 PF00643 zf-B_box: B-box zinc 46.9 16 0.00035 28.3 2.2 40 379-422 3-42 (42)
74 KOG4151 Myosin assembly protei 45.6 8.7 0.00019 47.3 0.8 60 5-73 290-349 (748)
75 PF08946 Osmo_CC: Osmosensory 44.1 17 0.00036 30.4 1.9 28 748-781 6-33 (46)
76 PF07610 DUF1573: Protein of u 43.8 42 0.00092 27.0 4.2 44 503-554 2-45 (45)
77 PRK10301 hypothetical protein; 43.1 53 0.0011 32.0 5.6 35 548-582 86-120 (124)
78 PF02221 E1_DerP2_DerF2: ML do 40.9 69 0.0015 30.0 5.9 35 541-575 87-123 (134)
79 PF02017 CIDE-N: CIDE-N domain 40.1 1.1E+02 0.0024 28.2 6.7 57 7-75 5-61 (78)
80 cd01792 ISG15_repeat1 ISG15 ub 38.9 1.2E+02 0.0026 26.8 6.8 75 1-86 1-75 (80)
81 KOG0418 Ubiquitin-protein liga 35.8 34 0.00074 36.1 3.2 35 731-766 163-197 (200)
82 PF04234 CopC: CopC domain; I 35.6 56 0.0012 30.0 4.3 30 548-577 59-88 (97)
83 PF11679 DUF3275: Protein of u 33.9 3E+02 0.0065 29.8 9.7 34 559-592 42-77 (214)
84 PF01724 DUF29: Domain of unkn 33.4 24 0.00052 35.0 1.6 40 748-797 13-52 (139)
85 COG3589 Uncharacterized conser 32.8 41 0.00088 38.4 3.4 43 728-784 49-92 (360)
86 cd00166 SAM Sterile alpha moti 32.2 73 0.0016 25.7 4.0 44 733-788 7-50 (63)
87 KOG4317 Predicted Zn-finger pr 31.8 22 0.00049 40.0 1.2 30 380-413 8-38 (383)
88 cd01806 Nedd8 Nebb8-like ubiq 30.1 2.4E+02 0.0053 23.8 7.0 69 5-87 3-72 (76)
89 PF13598 DUF4139: Domain of un 30.0 1.8E+02 0.004 31.6 7.8 86 497-593 167-256 (317)
90 PF13473 Cupredoxin_1: Cupredo 29.9 32 0.00068 31.6 1.7 62 488-570 34-95 (104)
91 PF13344 Hydrolase_6: Haloacid 29.6 66 0.0014 29.8 3.7 51 728-784 42-100 (101)
92 smart00737 ML Domain involved 29.2 1.2E+02 0.0026 28.3 5.4 35 541-575 73-109 (118)
93 PTZ00044 ubiquitin; Provisiona 28.6 1.5E+02 0.0033 25.4 5.5 71 5-88 3-73 (76)
94 PF02207 zf-UBR: Putative zinc 28.1 35 0.00075 30.0 1.5 33 393-425 12-48 (71)
95 cd00029 C1 Protein kinase C co 27.6 30 0.00064 27.2 1.0 25 376-401 8-35 (50)
96 cd01800 SF3a120_C Ubiquitin-li 27.5 1.7E+02 0.0037 25.6 5.8 67 10-88 4-70 (76)
97 PF14555 UBA_4: UBA-like domai 27.5 1E+02 0.0022 24.6 3.9 26 741-767 12-37 (43)
98 PF10845 DUF2576: Protein of u 27.4 30 0.00064 29.0 0.9 27 743-769 7-33 (48)
99 cd01796 DDI1_N DNA damage indu 27.3 1E+02 0.0023 26.7 4.4 57 5-73 1-58 (71)
100 cd06536 CIDE_N_ICAD CIDE_N dom 26.2 2.5E+02 0.0055 26.1 6.7 60 7-76 5-64 (80)
101 cd01799 Hoil1_N Ubiquitin-like 26.1 82 0.0018 28.0 3.5 55 5-73 5-60 (75)
102 PF07975 C1_4: TFIIH C1-like d 26.1 45 0.00098 28.4 1.8 36 381-417 1-44 (51)
103 PF07929 PRiA4_ORF3: Plasmid p 25.1 2.3E+02 0.0049 28.7 6.9 50 3-58 3-56 (179)
104 PF02536 mTERF: mTERF; InterP 24.8 55 0.0012 35.6 2.7 58 732-790 177-261 (345)
105 PF00130 C1_1: Phorbol esters/ 24.7 55 0.0012 26.5 2.0 25 376-401 8-35 (53)
106 cd00917 PG-PI_TP The phosphati 24.6 1.6E+02 0.0034 28.2 5.4 38 541-583 78-117 (122)
107 COG2372 CopC Uncharacterized p 24.4 1.4E+02 0.0031 29.8 5.1 38 547-584 86-123 (127)
108 TIGR00601 rad23 UV excision re 24.2 77 0.0017 36.5 3.8 40 731-771 157-197 (378)
109 PF10007 DUF2250: Uncharacteri 23.7 1.5E+02 0.0032 28.1 4.8 48 725-785 4-51 (92)
110 PF05266 DUF724: Protein of un 23.5 33 0.00071 35.9 0.6 49 733-787 39-89 (190)
111 cd01615 CIDE_N CIDE_N domain, 23.3 3E+02 0.0064 25.5 6.5 58 7-76 5-62 (78)
112 PF10989 DUF2808: Protein of u 22.7 1.6E+02 0.0034 29.2 5.2 26 539-564 96-122 (146)
113 PF12389 Peptidase_M73: Camely 22.7 3.4E+02 0.0074 29.1 7.8 113 489-605 57-186 (199)
114 cd01794 DC_UbP_C dendritic cel 22.4 1.1E+02 0.0024 26.7 3.6 56 8-74 2-57 (70)
115 cd01804 midnolin_N Ubiquitin-l 22.1 2.8E+02 0.0061 24.5 6.1 68 5-87 4-72 (78)
116 PF14445 Prok-RING_2: Prokaryo 21.8 16 0.00035 31.3 -1.6 33 380-412 8-50 (57)
117 smart00109 C1 Protein kinase C 21.4 50 0.0011 25.6 1.1 24 377-401 9-34 (49)
118 KOG4582 Uncharacterized conser 21.1 29 0.00064 38.1 -0.3 142 7-166 10-151 (278)
119 KOG2807 RNA polymerase II tran 20.9 41 0.00089 38.2 0.8 30 382-412 333-362 (378)
120 cd06535 CIDE_N_CAD CIDE_N doma 20.6 3.2E+02 0.007 25.3 6.2 48 7-63 5-52 (77)
121 PF00394 Cu-oxidase: Multicopp 20.1 1.8E+02 0.0038 28.8 4.9 69 492-568 63-136 (159)
No 1
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=99.83 E-value=3.1e-20 Score=168.04 Aligned_cols=85 Identities=60% Similarity=0.983 Sum_probs=80.7
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHc-----cC
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ-----RL 79 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q-----~l 79 (842)
++|||+|||++|||++++++| +.++++..|++||+++|+|+++.+|+|+|+|+|||+|+|++|+||.+|++. +.
T Consensus 1 l~vKv~y~~~~rRf~l~~~~~-~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~ 79 (91)
T cd06398 1 LVVKVKYGGTLRRFTFPVAEN-QLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRL 79 (91)
T ss_pred CEEEEEeCCEEEEEEeccccc-cCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCC
Confidence 589999999999999999866 889999999999999999999999999999999999999999999999984 69
Q ss_pred ceEEEEEEecC
Q 003172 80 KFLRIDVHLNN 90 (842)
Q Consensus 80 ~~LrI~V~l~~ 90 (842)
+.|||.|++++
T Consensus 80 ~~lrl~v~~~~ 90 (91)
T cd06398 80 NPLRIDVTVDY 90 (91)
T ss_pred ceEEEEEEEec
Confidence 99999999876
No 2
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=99.69 E-value=6.7e-17 Score=143.48 Aligned_cols=77 Identities=30% Similarity=0.577 Sum_probs=69.5
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhC--CCCCCccEEEEecCCCCEEEEcCChhHHHHHH-ccCce
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFN--FPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR-QRLKF 81 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~--l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~-q~l~~ 81 (842)
++||+.||||+|||++|.+ ++++..|+++||++|+ +++.++|.|||+|+|||+|||.+++||..|++ .++++
T Consensus 1 ~iiK~~~g~DiR~~~~~~~-----~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGDlVTIts~~dL~~A~~~~~~~~ 75 (81)
T cd06401 1 LILKAQLGDDIRRIPIHNE-----DITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGDLITIFDSSDLSFAIQCSRILK 75 (81)
T ss_pred CeEEEEeCCeEEEEeccCc-----cccHHHHHHHHHHHhccccCCcccEEEEEECCCCCEEEeccHHHHHHHHhcCcceE
Confidence 5899999999999999953 5899999999999996 88999999999999999999999999999998 67766
Q ss_pred EEEEE
Q 003172 82 LRIDV 86 (842)
Q Consensus 82 LrI~V 86 (842)
|+|.|
T Consensus 76 l~~~~ 80 (81)
T cd06401 76 LTLFV 80 (81)
T ss_pred EEEec
Confidence 76654
No 3
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=99.64 E-value=4.7e-16 Score=137.64 Aligned_cols=66 Identities=27% Similarity=0.417 Sum_probs=61.9
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHc
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ 77 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q 77 (842)
+++|++|+|++|||+++. +++++.|++||.++|+|++++ |.|+|.|+|||+|||+|++||.+|+++
T Consensus 1 ~~fKv~~~g~~RRf~~~~------~pt~~~L~~kl~~Lf~lp~~~-~~vtYiDeD~D~ITlssd~eL~d~~~~ 66 (82)
T cd06397 1 TQFKSSFLGDTRRIVFPD------IPTWEALASKLENLYNLPEIK-VGVTYIDNDNDEITLSSNKELQDFYRL 66 (82)
T ss_pred CeEEEEeCCceEEEecCC------CccHHHHHHHHHHHhCCChhH-eEEEEEcCCCCEEEecchHHHHHHHHh
Confidence 468999999999999983 699999999999999999886 999999999999999999999999884
No 4
>KOG4351 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=6.1e-16 Score=158.91 Aligned_cols=110 Identities=23% Similarity=0.460 Sum_probs=97.5
Q ss_pred ceEEeeeeccCCCccc-----------CCCCcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCC
Q 003172 478 DSCFILDVNVLDGTMM-----------APSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEG 546 (842)
Q Consensus 478 ~A~FV~DVTIpDGT~V-----------~PGt~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGE 546 (842)
.+.|+.++++-++.++ +|+.+|++.|||+|.|...||.|.+|.+++||++....-. . .+.+.|+|
T Consensus 74 ~~~~~~~lsv~~~~~i~~e~~v~v~f~aP~~~y~s~WRl~n~G~~~Wp~~~~lk~~~~d~~~~~n~~--~--~~sLdP~E 149 (244)
T KOG4351|consen 74 GMLFVASLSVKDQEVIGHEGVVSVEFIAPALEYTSHWRLQNSGPRVWPSDPCLKEVSPDQIEKGNIS--S--SPSLDPQE 149 (244)
T ss_pred ccceeeeeeecceeeeccccceeeeecCCCccceeeEEEecCCceeCCCCCcccccCCccccceeee--c--ccccCchh
Confidence 4678888888888755 9999999999999999999999999999999998865421 1 23577999
Q ss_pred EEEEEEEEecCCCCceEEEEEEEECCCCCccCCeEEEEEEEcCCC
Q 003172 547 EIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDPSL 591 (842)
Q Consensus 547 evdVSV~L~AP~~pG~YiSyWRL~tpdG~~FGdrLWV~I~V~~~~ 591 (842)
+.+|.+.+.+|.++|.|...||+++++|.+||+.||+++.+....
T Consensus 150 ~~~I~~~~s~P~e~g~~~~~~q~vt~e~~~~GesiwvI~~~~~ls 194 (244)
T KOG4351|consen 150 ETDILAKESRPGEVGEIPGKWQNVTSENLLYGESIWVIPAGDLLS 194 (244)
T ss_pred hhhhhhhhcCCCccccccchheeecccceeeecceEEeecCCCcc
Confidence 999999999999999999999999999999999999999987553
No 5
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=99.40 E-value=1.5e-13 Score=110.32 Aligned_cols=43 Identities=47% Similarity=1.048 Sum_probs=39.8
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhc--CCCCcceEEe
Q 003172 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA--MGSEADYIRI 422 (842)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~--~~~~H~firI 422 (842)
|.||+|+..||.|.||||.+|.|||||+.||.. |...|.|.||
T Consensus 1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~~~H~~~H~F~ri 45 (45)
T cd02344 1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKTRKHNTRHTFGRI 45 (45)
T ss_pred CCCCCCCCCCCccCeEECCCCCCccchHHhhCCCCcCCCCceeeC
Confidence 689999989999999999999999999999987 5579999886
No 6
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=99.38 E-value=1.7e-13 Score=108.81 Aligned_cols=43 Identities=72% Similarity=1.507 Sum_probs=40.7
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhcCCCCcceEEe
Q 003172 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRI 422 (842)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~~~~~H~firI 422 (842)
|.||+|++.||+|.||||.+|.|||||+.||..+++...|++|
T Consensus 1 I~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~~n~~~y~~~ 43 (43)
T cd02342 1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSRMGNEGEYTRI 43 (43)
T ss_pred CCCCCCCCCcccccceEeCCCCCCccHHHHhhhhcChhheeeC
Confidence 6899999999999999999999999999999999999888875
No 7
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=99.33 E-value=6.9e-12 Score=111.93 Aligned_cols=77 Identities=27% Similarity=0.440 Sum_probs=67.8
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH----ccCc
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR----QRLK 80 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~----q~l~ 80 (842)
++|||.||++++||+++. +.++..|+++|+..|++.....|.|+|.|++||+|+|..|+||.+|++ ++..
T Consensus 1 ~~vK~~~~~d~~r~~l~~------~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~ 74 (82)
T cd06407 1 VRVKATYGEEKIRFRLPP------SWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSH 74 (82)
T ss_pred CEEEEEeCCeEEEEEcCC------CCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCC
Confidence 479999999999999993 479999999999999996558999999999999999999999999665 4566
Q ss_pred eEEEEEE
Q 003172 81 FLRIDVH 87 (842)
Q Consensus 81 ~LrI~V~ 87 (842)
.++|.|+
T Consensus 75 ~v~l~v~ 81 (82)
T cd06407 75 TIRLLVH 81 (82)
T ss_pred eEEEEee
Confidence 7777764
No 8
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=99.32 E-value=7.3e-12 Score=108.58 Aligned_cols=76 Identities=37% Similarity=0.681 Sum_probs=66.5
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH-cc---C
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR-QR---L 79 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~-q~---l 79 (842)
.++||+.||+++|||.++ . +.++..|+++|++.|++. ...+.|+|.|+|||+|+|.+|+||..|++ .+ .
T Consensus 1 ~~~vK~~~~~~~~~~~~~---~---~~s~~dL~~~i~~~~~~~-~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~~~~~ 73 (81)
T smart00666 1 TVDVKLRYGGETRRLSVP---R---DISFEDLRSKVAKRFGLD-NQSFTLKYQDEDGDLVSLTSDEDLEEAIEEYDSLGS 73 (81)
T ss_pred CccEEEEECCEEEEEEEC---C---CCCHHHHHHHHHHHhCCC-CCCeEEEEECCCCCEEEecCHHHHHHHHHHHHHcCC
Confidence 378999999999999998 2 589999999999999985 47899999999999999999999999887 22 3
Q ss_pred ceEEEEE
Q 003172 80 KFLRIDV 86 (842)
Q Consensus 80 ~~LrI~V 86 (842)
..|+|.|
T Consensus 74 ~~l~l~v 80 (81)
T smart00666 74 KKLRLHV 80 (81)
T ss_pred ceEEEEe
Confidence 5677765
No 9
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=99.32 E-value=1.1e-11 Score=107.54 Aligned_cols=78 Identities=42% Similarity=0.702 Sum_probs=68.1
Q ss_pred cEEEEEEeCCeeee-EEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHc----c
Q 003172 4 TMVIKVKYGDTLRR-FNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ----R 78 (842)
Q Consensus 4 ~i~IKv~~gd~lRR-f~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q----~ 78 (842)
|+.||+.|+++.|| |.++ . +.++..|+.+|++.|++. ..+|.|+|.|+|||+|+|.+|+||..|++. +
T Consensus 1 t~~vK~~~~~~~~~~~~~~---~---~~s~~~L~~~i~~~~~~~-~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~~~ 73 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLP---S---DVSFDDLRSKIREKFGLL-DEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKESG 73 (84)
T ss_dssp SEEEEEEETTEEEEEEEEC---S---TSHHHHHHHHHHHHHTTS-TSSEEEEEEETTSSEEEESSHHHHHHHHHHHHHCT
T ss_pred CEEEEEEECCeeEEEEEcC---C---CCCHHHHHHHHHHHhCCC-CccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHhcC
Confidence 58999999999999 6666 2 379999999999999986 889999999999999999999999998772 3
Q ss_pred CceEEEEEEe
Q 003172 79 LKFLRIDVHL 88 (842)
Q Consensus 79 l~~LrI~V~l 88 (842)
-++|||.|+-
T Consensus 74 ~~~lrl~v~~ 83 (84)
T PF00564_consen 74 SKTLRLFVQD 83 (84)
T ss_dssp TSCEEEEEEE
T ss_pred CCcEEEEEEe
Confidence 4578888874
No 10
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=99.31 E-value=1.5e-12 Score=138.48 Aligned_cols=117 Identities=25% Similarity=0.378 Sum_probs=83.9
Q ss_pred CccCCcccCc-----eecCCCCCCCccccceecCCCCCcchhhhhhhc--CCCCcceEEecCCCCcCCCCCCcCccCCcC
Q 003172 370 DALMGMFHKG-----VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA--MGSEADYIRIDRPVHYRHPRPFRGLYDHRQ 442 (842)
Q Consensus 370 ~~~~~vvH~G-----V~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~--~~~~H~firI~~Pv~~r~~~~~~g~~d~~~ 442 (842)
+...+.+|.+ +.||+|+..+|+|.||||++|.|||||+.||+. +|..|.|+|+.+-. ..+.+. .+.
T Consensus 138 ~~~~~~~H~~~~~~~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~~~h~~H~~lR~~t~~-----t~~~~~--~~~ 210 (278)
T KOG4582|consen 138 NPVVGEMHPNISKLSVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGNEHHAAHAMLRLHTNE-----TPFSGY--VML 210 (278)
T ss_pred CCCccccCCCcccccccCCCccCCccccceeeecCCCccchhHHhhcCCCCCcccceeeccccc-----CCCCcc--eec
Confidence 4556899999 999999977999999999999999999999998 67899999976611 111110 000
Q ss_pred ccccCCCCCCccCCCCCCCccccccCCCCCCCCCcceEEeeeeccCCCcccCCCCcEEEEEEEEcCCCCCCCCCcEEEEe
Q 003172 443 NFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWI 522 (842)
Q Consensus 443 ~r~r~~p~p~~~~~~a~~~p~v~~~~~~k~~~~kL~A~FV~DVTIpDGT~V~PGt~FtKtWrLrNsGt~~WP~Gt~Lvfv 522 (842)
. + . .....+.. -+-.+.+...|.+.|.+++.|...|+.|+...+.
T Consensus 211 ~------~--------p------------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (278)
T KOG4582|consen 211 S------S--------P------------PNPVNLNK---------RPIFVGHSKVRGNDWYWTSLGGGEGRIGRVNEIV 255 (278)
T ss_pred c------C--------C------------CCcccccc---------cccccccccccccCCccccccCCCCCCccccccc
Confidence 0 0 0 00000011 1223456678999999999999999999999998
Q ss_pred cCCCCC
Q 003172 523 GGDKFS 528 (842)
Q Consensus 523 gGD~m~ 528 (842)
+++...
T Consensus 256 ~~~~~~ 261 (278)
T KOG4582|consen 256 LWINGP 261 (278)
T ss_pred cccccc
Confidence 887644
No 11
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=99.28 E-value=1.9e-11 Score=109.17 Aligned_cols=76 Identities=21% Similarity=0.419 Sum_probs=67.6
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH---ccCce
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR---QRLKF 81 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~---q~l~~ 81 (842)
|+|||+|+++.+||.++-.+ ..++..|.++|+..|+|. .|.|||.|+|||.|+|..+.||.+|++ .+-+.
T Consensus 1 V~vKaty~~d~~rf~~~~~~----~~~~~~L~~ev~~rf~l~---~f~lKYlDde~e~v~lssd~eLeE~~rl~~~~~~~ 73 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSE----NTTWASVEAMVKVSFGLN---DIQIKYVDEENEEVSVNSQGEYEEALKSAVRQGNL 73 (81)
T ss_pred CEEEEEECCeEEEEEecCCC----CCCHHHHHHHHHHHhCCC---cceeEEEcCCCCEEEEEchhhHHHHHHHHHhCCCE
Confidence 57999999999999999532 478999999999999997 999999999999999999999998766 45578
Q ss_pred EEEEEE
Q 003172 82 LRIDVH 87 (842)
Q Consensus 82 LrI~V~ 87 (842)
||++|.
T Consensus 74 l~~~v~ 79 (81)
T cd06396 74 LQMNVY 79 (81)
T ss_pred EEEEEe
Confidence 999885
No 12
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=99.27 E-value=2.4e-12 Score=103.34 Aligned_cols=43 Identities=33% Similarity=0.716 Sum_probs=39.3
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhc--CCCCcceEEe
Q 003172 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA--MGSEADYIRI 422 (842)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~--~~~~H~firI 422 (842)
|.||+|+..+|.|.||||++|.|||||+.||.. |++.|+|+++
T Consensus 1 i~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~~~H~~~H~f~r~ 45 (45)
T cd02339 1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCYHGDKHDLEHRFYRY 45 (45)
T ss_pred CCCCCCCCCCcccCeEECCCCCCccchHHHhCCCCCCCCCCEEeC
Confidence 689999988999999999999999999999976 5689999874
No 13
>KOG4351 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=3.1e-12 Score=131.97 Aligned_cols=207 Identities=25% Similarity=0.347 Sum_probs=135.8
Q ss_pred CCCCCcceEEeeeeccCCCcccCCCCcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEE
Q 003172 472 PGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIA 551 (842)
Q Consensus 472 ~~~~kL~A~FV~DVTIpDGT~V~PGt~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGEevdVS 551 (842)
...+.+.|+|+.|+ |.|+|||.|++.|+.++.|++++|+.+....++... ...|-+.+|+
T Consensus 37 qm~P~~~aaF~Ld~---------------knW~lqna~sv~~d~~t~l~~m~~~~~~~~lsv~~~-----~~i~~e~~v~ 96 (244)
T KOG4351|consen 37 QMNPMLSAAFVLDM---------------KNWNLQNAGSVYWDQDTKLKSMPGMLFVASLSVKDQ-----EVIGHEGVVS 96 (244)
T ss_pred ccCcccccceeeec---------------cceeccccccEEEcCCCceeeccccceeeeeeecce-----eeecccccee
Confidence 34456899999996 999999999999999999999999887654333222 2258899999
Q ss_pred EEEecCCCCceEEEEEEEECCCCCccCCeEEEEEEEcCCCccccccccccccCCCCCCCCCCCCcceeeeecc-ccccCC
Q 003172 552 VDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDPSLKDSISDGFGGLNLNVPPESTRSNGAEIIDVNVR-PIVDGG 630 (842)
Q Consensus 552 V~L~AP~~pG~YiSyWRL~tpdG~~FGdrLWV~I~V~~~~~~s~~~~~~a~nln~p~~~~~~~~~~~vd~nv~-p~~~~~ 630 (842)
|+|+||..+ |++||||.+. |.+.|+. .+-.+....+++..+|++.-+.-..++..++.- ... |.+.
T Consensus 97 v~f~aP~~~--y~s~WRl~n~-----G~~~Wp~---~~~lk~~~~d~~~~~n~~~~~sLdP~E~~~I~~-~~s~P~e~-- 163 (244)
T KOG4351|consen 97 VEFIAPALE--YTSHWRLQNS-----GPRVWPS---DPCLKEVSPDQIEKGNISSSPSLDPQEETDILA-KESRPGEV-- 163 (244)
T ss_pred eeecCCCcc--ceeeEEEecC-----CceeCCC---CCcccccCCccccceeeecccccCchhhhhhhh-hhcCCCcc--
Confidence 999999999 9999999986 8999998 666667778999999988655555444332221 111 2111
Q ss_pred CCCCCCCCCcCCCCCCcccCccccccccccCCCcccccCCCCCCCCCCCCCCCCCCccCCCCCccccCccCCcccCCCCc
Q 003172 631 FQEPSNSFSVKEPAKPWVEQPKKEQEMNVPLNDSLLVGHGGASASAPPPPLPRSEATSTVLYPIIDLAESEADETSHPAV 710 (842)
Q Consensus 631 ~~~p~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~ 710 (842)
.+.+.+-+ .+-.++.+.+..- ..+|++.+ ..+...|+|......-...-+
T Consensus 164 -----------------g~~~~~~q--~vt~e~~~~Gesi------wvI~~~~~-----ls~e~~~~~~~~~~~~l~~ss 213 (244)
T KOG4351|consen 164 -----------------GEIPGKWQ--NVTSENLLYGESI------WVIPAGDL-----LSFELSDIPIVQELEQLPVSS 213 (244)
T ss_pred -----------------ccccchhe--eecccceeeecce------EEeecCCC-----cceeeccCccchhhhhccccC
Confidence 11111101 1112223331111 11233322 236666666543322222333
Q ss_pred cccCcCCCccccccchhHHHHHHHHHHHHcCC
Q 003172 711 SFTGLPTSSEEIRSDKDAVEQTLLRELEEMGF 742 (842)
Q Consensus 711 ~~v~~p~~~~e~~~~~n~~e~~ll~eLe~MGF 742 (842)
++-++|.+..+. -+.+..+.++++|||+|||
T Consensus 214 ~~~~~pv~i~~~-~~~~~~~~~~~~e~e~~gf 244 (244)
T KOG4351|consen 214 TPCDSPVPIDSP-IIEKPGLGQIEEENEGAGF 244 (244)
T ss_pred CCCCCCCCCCcc-cccCcchhhhhhhcccCCC
Confidence 457778887776 4688999999999999998
No 14
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=99.26 E-value=2.8e-11 Score=109.40 Aligned_cols=80 Identities=23% Similarity=0.379 Sum_probs=68.5
Q ss_pred EEEEEEeC-----CeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHc-c
Q 003172 5 MVIKVKYG-----DTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ-R 78 (842)
Q Consensus 5 i~IKv~~g-----d~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q-~ 78 (842)
++||+-+. ..+|||.++.. ...++..|+++|+++|....+.+|+|+|+|+|||.|||.+++||..|+.. .
T Consensus 1 ~~vkayl~~~~~~~EIRRf~l~~~----~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~~ 76 (87)
T cd06402 1 LTVKAYLLGKDANAEIRRFAIDED----VSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVAFSSDEELVMALGSLN 76 (87)
T ss_pred CeEEEeecCCCCccceEEEEecCC----CCcCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEeecCHHHHHHHHHcCC
Confidence 47888873 46999999833 46899999999999998777899999999999999999999999999984 3
Q ss_pred CceEEEEEEe
Q 003172 79 LKFLRIDVHL 88 (842)
Q Consensus 79 l~~LrI~V~l 88 (842)
-..|||.|+.
T Consensus 77 ~~~~RlyI~~ 86 (87)
T cd06402 77 DDTFRIYIKE 86 (87)
T ss_pred CCcEEEEEEe
Confidence 4568888874
No 15
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=99.26 E-value=2.6e-11 Score=104.59 Aligned_cols=76 Identities=38% Similarity=0.639 Sum_probs=66.3
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHc----cCc
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ----RLK 80 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q----~l~ 80 (842)
+.||++|++++|||.++.+ +.++..|+++|++.|++.. ..|.|+|.|+|||+|+|.+|+||..|+++ .-.
T Consensus 1 ~~vK~~~~~~~~~~~~~~~-----~~s~~~L~~~i~~~~~~~~-~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~~~~~~ 74 (81)
T cd05992 1 VRVKVKYGGEIRRFVVVSR-----SISFEDLRSKIAEKFGLDA-VSFKLKYPDEDGDLVTISSDEDLEEAIEEARRSGSK 74 (81)
T ss_pred CcEEEEecCCCEEEEEecC-----CCCHHHHHHHHHHHhCCCC-CcEEEEeeCCCCCEEEeCCHHHHHHHHHHHhhcCCc
Confidence 4799999999999999943 5999999999999999865 89999999999999999999999999883 244
Q ss_pred eEEEEE
Q 003172 81 FLRIDV 86 (842)
Q Consensus 81 ~LrI~V 86 (842)
+|+|.|
T Consensus 75 ~l~l~v 80 (81)
T cd05992 75 KLRLFV 80 (81)
T ss_pred cEEEEe
Confidence 666654
No 16
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=99.17 E-value=1.5e-11 Score=97.70 Aligned_cols=42 Identities=48% Similarity=0.884 Sum_probs=37.9
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhc-CCCCcceEEe
Q 003172 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA-MGSEADYIRI 422 (842)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~-~~~~H~firI 422 (842)
|.||+|+. +|.|.||||.+|+|||||+.||.. .|+.|+|++|
T Consensus 1 v~Cd~C~~-~i~G~ry~C~~C~d~dLC~~C~~~~~H~~H~f~~~ 43 (43)
T cd02340 1 VICDGCQG-PIVGVRYKCLVCPDYDLCESCEAKGVHPEHAMLKI 43 (43)
T ss_pred CCCCCCCC-cCcCCeEECCCCCCccchHHhhCcCCCCCCCEEeC
Confidence 58999996 999999999999999999999988 3488999875
No 17
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=99.12 E-value=2.4e-11 Score=97.41 Aligned_cols=44 Identities=43% Similarity=0.953 Sum_probs=35.2
Q ss_pred ccCceecCCCCCCCccccceecCCCCCcchhhhhhhc--CCCCcce
Q 003172 376 FHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA--MGSEADY 419 (842)
Q Consensus 376 vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~--~~~~H~f 419 (842)
+|.++.||+|+..+|.|.||+|.+|+|||||..||.. .+..|.|
T Consensus 1 ~h~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g~~~~~H~~ 46 (46)
T PF00569_consen 1 IHHGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKGRHSHNHKM 46 (46)
T ss_dssp -CSSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH--H-SSSSE
T ss_pred CCCCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCcCCCCCcCc
Confidence 5899999999977999999999999999999999988 4556654
No 18
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=99.12 E-value=3.4e-11 Score=98.00 Aligned_cols=43 Identities=35% Similarity=0.869 Sum_probs=38.5
Q ss_pred eecCCCCCCCccccceecCCCC--Ccchhhhhhhc---CCCCcceEEe
Q 003172 380 VRCDGCGVHPITGPRFKSKVKD--DYDLCSICFAA---MGSEADYIRI 422 (842)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~--DyDLCs~C~a~---~~~~H~firI 422 (842)
+.||+|+..||+|.||+|++|. |||||+.||.. |...|.|.+|
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~~H~~~H~~~~i 48 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGESHQEDHWLVKI 48 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCcCCCCCCCceeeC
Confidence 4699999889999999999999 99999999987 4678888775
No 19
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=99.11 E-value=3.5e-11 Score=98.35 Aligned_cols=41 Identities=32% Similarity=0.647 Sum_probs=36.0
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhc------CCCCcceE
Q 003172 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADYI 420 (842)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~------~~~~H~fi 420 (842)
+.||+|+..||.|.||||++|.|||||+.||.. |.+.|+|.
T Consensus 1 ~~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~~~~H~~~Hp~~ 47 (49)
T cd02334 1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTSKSHKNSHPMK 47 (49)
T ss_pred CCCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCcCCCCCCCCCee
Confidence 579999988999999999999999999999976 45567664
No 20
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=99.11 E-value=3.4e-10 Score=101.51 Aligned_cols=77 Identities=22% Similarity=0.426 Sum_probs=67.5
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH----ccCc
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR----QRLK 80 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~----q~l~ 80 (842)
|.||+.|+|+++++.+.+. +++..|.++|+++|++..+..|+|+|.||+||.|||.++.+|..|++ .|=.
T Consensus 1 i~~K~~y~gdi~it~~d~~------~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~ 74 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPS------ISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKDS 74 (83)
T ss_pred CeEEEEecCcEEEEEcCCC------cCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCcc
Confidence 5799999999999999854 88999999999999999999999999999999999999999999876 3333
Q ss_pred eEEEEEE
Q 003172 81 FLRIDVH 87 (842)
Q Consensus 81 ~LrI~V~ 87 (842)
.|.|-|.
T Consensus 75 ~l~ihvf 81 (83)
T cd06404 75 ELNIHVF 81 (83)
T ss_pred cEEEEec
Confidence 4666554
No 21
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=99.08 E-value=5.2e-10 Score=99.47 Aligned_cols=76 Identities=24% Similarity=0.517 Sum_probs=68.5
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH--ccCceE
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR--QRLKFL 82 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~--q~l~~L 82 (842)
+.||.||++..|||.+.-+. .-.+..+..+|+++++|+ +.+|+|.|+|.|||++.|..|+++.+|+. ..| |
T Consensus 1 veVKSkfdaEfRRFsl~r~~----~~~f~ef~~ll~~lH~l~-~~~f~i~Y~D~~gDLLPInNDdNf~kAlssa~pl--L 73 (80)
T cd06403 1 VEVKSKFDAEFRRFSLDRNK----PGKFEDFYKLLEHLHHIP-NVDFLIGYTDPHGDLLPINNDDNFLKALSSANPL--L 73 (80)
T ss_pred CceecccCCeEEEEEecccc----CcCHHHHHHHHHHHhCCC-CCcEEEEEeCCCCCEecccCcHHHHHHHHcCCCc--e
Confidence 46999999999999999553 578999999999999996 79999999999999999999999999998 455 8
Q ss_pred EEEEE
Q 003172 83 RIDVH 87 (842)
Q Consensus 83 rI~V~ 87 (842)
||.|+
T Consensus 74 Rl~iq 78 (80)
T cd06403 74 RIFIQ 78 (80)
T ss_pred EEEEE
Confidence 88887
No 22
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=99.03 E-value=1.4e-10 Score=94.40 Aligned_cols=41 Identities=39% Similarity=0.788 Sum_probs=36.0
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhc------CCCCcceE
Q 003172 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADYI 420 (842)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~------~~~~H~fi 420 (842)
|.||+|+..+|.|.||||.+|.|||||+.||.. |.+.|+|.
T Consensus 1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~~~~~H~~~H~~~ 47 (49)
T cd02338 1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVTTERHLFDHPMQ 47 (49)
T ss_pred CCCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCCcCCCCCCCCCEE
Confidence 689999988999999999999999999999987 34467764
No 23
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=98.96 E-value=2.7e-10 Score=92.85 Aligned_cols=41 Identities=32% Similarity=0.631 Sum_probs=35.6
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhc------CCCCcceE
Q 003172 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADYI 420 (842)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~------~~~~H~fi 420 (842)
+.||+|+..+|.|.||+|++|.|||||..||.. |.+.|.|.
T Consensus 1 ~~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~~~~~H~~~H~~~ 47 (49)
T cd02345 1 LSCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGRETKRHNSLHIMY 47 (49)
T ss_pred CcCCCCCCCCceEeeEECCCCCCcCchHHHHhCCCcCCCCCCCCCcc
Confidence 579999977999999999999999999999985 34567664
No 24
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=98.85 E-value=1.2e-09 Score=89.09 Aligned_cols=39 Identities=28% Similarity=0.667 Sum_probs=33.2
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhc------CCCCcce
Q 003172 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADY 419 (842)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~------~~~~H~f 419 (842)
|.||+|.. .+.|.||||+.|.|||||+.||.. |...|+|
T Consensus 1 i~CdgC~~-~~~~~RykCl~C~d~DlC~~Cf~~g~~~~~H~~~Hpm 45 (48)
T cd02343 1 ISCDGCDE-IAPWHRYRCLQCTDMDLCKTCFLGGVKPEGHEDDHEM 45 (48)
T ss_pred CCCCCCCC-cCCCceEECCCCCCchhHHHHHhCCccCCCCCCCCCc
Confidence 57999995 689999999999999999999987 3445655
No 25
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=98.84 E-value=7.1e-09 Score=93.83 Aligned_cols=64 Identities=28% Similarity=0.442 Sum_probs=59.5
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR 76 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~ 76 (842)
++.|||.|+|++|=+.++ . ++.+..|.++|+..|+|. ..|+|+|+|| ||.|||.+++||..|++
T Consensus 2 ~ikVKv~~~~Dv~~i~v~---~---~i~f~dL~~kIrdkf~~~--~~~~iKykDE-GD~iti~sq~DLd~Ai~ 65 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIG---P---DTGFADFEDKIRDKFGFK--RRLKIKMKDD-GDMITMGDQDDLDMAID 65 (86)
T ss_pred cEEEEEEecCcEEEEEcC---C---CCCHHHHHHHHHHHhCCC--CceEEEEEcC-CCCccccCHHHHHHHHH
Confidence 589999999999999998 2 589999999999999994 6999999999 99999999999999887
No 26
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=98.82 E-value=2.7e-09 Score=86.72 Aligned_cols=41 Identities=32% Similarity=0.585 Sum_probs=36.0
Q ss_pred ecCCCCCCCccccceecCCCCCcchhhhhhhc------CCCCcceEE
Q 003172 381 RCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADYIR 421 (842)
Q Consensus 381 ~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~------~~~~H~fir 421 (842)
.||+|+..++.|.||+|.+|.|||||..||.. |.++|+|..
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~~~~~H~~~H~~~~ 48 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEIGKHRNDHNYRV 48 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcCCCCCCCCCCCeEe
Confidence 69999988888899999999999999999987 456788764
No 27
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=98.81 E-value=2.9e-09 Score=85.23 Aligned_cols=42 Identities=40% Similarity=0.877 Sum_probs=35.9
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhcC----CCCcceEEe
Q 003172 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM----GSEADYIRI 422 (842)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~~----~~~H~firI 422 (842)
+.||+|+. +|.|.||+|..|.|||||..||... .+.|+|.+|
T Consensus 1 ~~C~~C~~-~i~g~r~~C~~C~d~dLC~~Cf~~~~~~H~~~H~~~~~ 46 (46)
T cd02249 1 YSCDGCLK-PIVGVRYHCLVCEDFDLCSSCYAKGKKGHPPDHSFTEI 46 (46)
T ss_pred CCCcCCCC-CCcCCEEECCCCCCCcCHHHHHCcCcCCCCCCCCEeEC
Confidence 36999996 9999999999999999999999873 347887654
No 28
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=98.79 E-value=3.4e-09 Score=84.29 Aligned_cols=36 Identities=50% Similarity=1.051 Sum_probs=33.6
Q ss_pred ccCceecCCCCCCCccccceecCCCCCcchhhhhhhc
Q 003172 376 FHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA 412 (842)
Q Consensus 376 vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~ 412 (842)
.|+++.||+|+. +|.|.||+|.+|.|||||..||..
T Consensus 1 ~~~~~~C~~C~~-~i~g~ry~C~~C~d~dlC~~Cf~~ 36 (44)
T smart00291 1 VHHSYSCDTCGK-PIVGVRYHCLVCPDYDLCQSCFAK 36 (44)
T ss_pred CCCCcCCCCCCC-CCcCCEEECCCCCCccchHHHHhC
Confidence 367899999996 999999999999999999999987
No 29
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=98.68 E-value=7.9e-09 Score=112.09 Aligned_cols=53 Identities=36% Similarity=0.621 Sum_probs=45.8
Q ss_pred cccCceecCCCCCCCccccceecCCCCCcchhhhhhhc------CCCCcceEEecCCCC
Q 003172 375 MFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADYIRIDRPVH 427 (842)
Q Consensus 375 vvH~GV~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~------~~~~H~firI~~Pv~ 427 (842)
..|.||.||||+.....|.||||..|.|||||..||.. |..+|++.-|-.++.
T Consensus 4 ~rHe~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~d 62 (381)
T KOG1280|consen 4 SRHEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQCILSRVD 62 (381)
T ss_pred CCcCCceeccccccceeeeeeEeeeecchhHHHHHhhcCCCCcccCCCCceeEEeeccc
Confidence 46999999999988999999999999999999999987 456788766666554
No 30
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=98.65 E-value=1.1e-08 Score=80.88 Aligned_cols=40 Identities=25% Similarity=0.654 Sum_probs=34.6
Q ss_pred ecCCCCCCCccccceecCCCCCcchhhhhhhcCCCCcceEEe
Q 003172 381 RCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRI 422 (842)
Q Consensus 381 ~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~~~~~H~firI 422 (842)
.||+|.. +.|.||+|.+|+|||||..||......|.+.++
T Consensus 2 ~C~~C~~--~~~~r~~C~~C~dfDLC~~C~~~~~H~H~~~~~ 41 (41)
T cd02337 2 TCNECKH--HVETRWHCTVCEDYDLCITCYNTKNHPHKMEKL 41 (41)
T ss_pred cCCCCCC--cCCCceECCCCcchhhHHHHhCCCCCCcccccC
Confidence 6999984 779999999999999999999986667777653
No 31
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=98.07 E-value=1.1e-06 Score=102.60 Aligned_cols=53 Identities=26% Similarity=0.550 Sum_probs=45.3
Q ss_pred CcccCceecCCCCCCCccccceecCCCCCcchhhhhhhc------CCCCcceEEecCCCC
Q 003172 374 GMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADYIRIDRPVH 427 (842)
Q Consensus 374 ~vvH~GV~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~------~~~~H~firI~~Pv~ 427 (842)
...|. .+|++|+..||+|.||+|.+|.|||+|..||.. |...|+|.-+-.|-.
T Consensus 599 ~~kH~-~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgraak~hk~~~pM~Ey~~~tt 657 (966)
T KOG4286|consen 599 TAKHQ-AKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRAAKGHKMHYPMVEYCTPTT 657 (966)
T ss_pred HHHhh-hhcchhhhCccceeeeeehhhcChhHHhhHhhhcccccCCCCCCCceeeeCCCC
Confidence 56676 899999999999999999999999999999976 456788876666654
No 32
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=98.04 E-value=2.5e-05 Score=71.15 Aligned_cols=75 Identities=29% Similarity=0.417 Sum_probs=59.5
Q ss_pred EEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCC--CccEEEEecCCCCEEEEcCChhHHHHHH----ccC
Q 003172 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHD--SDLTLTYVDEDGDIVTLVDDDDLCDVMR----QRL 79 (842)
Q Consensus 6 ~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d--~~~~lrY~DeDGD~VTL~dd~DL~~a~~----q~l 79 (842)
.+|.. .|.+=||++.-. -++..|++.|.+=|++..+ ..|.|+|.|.|||+|.|+.|+||.+|+. ...
T Consensus 4 K~~~~-~GrvhRf~~~~s------~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~VllT~D~DL~e~v~iar~~g~ 76 (86)
T cd06409 4 KFKDP-KGRVHRFRLRPS------ESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLITSDSDLVAAVLVARSAGL 76 (86)
T ss_pred EeeCC-CCCEEEEEecCC------CCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEEEeccchHHHHHHHHHHcCC
Confidence 35555 444678887633 4789999999999988653 7999999999999999999999999654 466
Q ss_pred ceEEEEEE
Q 003172 80 KFLRIDVH 87 (842)
Q Consensus 80 ~~LrI~V~ 87 (842)
++++|.|.
T Consensus 77 ~~v~L~v~ 84 (86)
T cd06409 77 KKLDLHLH 84 (86)
T ss_pred CEEEEEEe
Confidence 77777764
No 33
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=97.85 E-value=5.8e-05 Score=68.00 Aligned_cols=71 Identities=28% Similarity=0.409 Sum_probs=59.3
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCC-CEEEEcCChhHHHHHH-ccCceE
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDG-DIVTLVDDDDLCDVMR-QRLKFL 82 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDG-D~VTL~dd~DL~~a~~-q~l~~L 82 (842)
.+|||.|.+ .|-|.+.. ++.+..|++||+.=|+++ ...+.|.|+||++ ++|-| .|+||.+|+. .+-.+|
T Consensus 3 ~vvKV~f~~---tIaIrvp~----~~~y~~L~~ki~~kLkl~-~e~i~LsYkde~s~~~v~l-~d~dle~aws~~~~~~l 73 (80)
T cd06406 3 YVVKVHFKY---TVAIQVAR----GLSYATLLQKISSKLELP-AEHITLSYKSEASGEDVIL-SDTNMEDVWSQAKDGCL 73 (80)
T ss_pred eEEEEEEEE---EEEEEcCC----CCCHHHHHHHHHHHhCCC-chhcEEEeccCCCCCccCc-ChHHHHHHHHhhcCCeE
Confidence 799999998 45666663 699999999999999998 5679999999985 77777 9999999988 355566
Q ss_pred EE
Q 003172 83 RI 84 (842)
Q Consensus 83 rI 84 (842)
++
T Consensus 74 TL 75 (80)
T cd06406 74 TL 75 (80)
T ss_pred EE
Confidence 55
No 34
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=97.76 E-value=3.5e-06 Score=91.89 Aligned_cols=39 Identities=31% Similarity=0.757 Sum_probs=37.0
Q ss_pred CCcccCceecCCCCCCCccccceecCCCCCcchhhhhhhc
Q 003172 373 MGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA 412 (842)
Q Consensus 373 ~~vvH~GV~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~ 412 (842)
.+++|+ +.|+.|...+|.|.||+|..|.+|.||+.||..
T Consensus 235 ~nv~hp-v~cs~c~srs~~gfry~cq~C~nyqlcq~cfwr 273 (434)
T KOG4301|consen 235 ENVFHP-VECSYCRSRSMMGFRYRCQQCHNYQLCQQCFWR 273 (434)
T ss_pred cccCCC-ccCcceecccccchhhhHhhcCCccccchhhcc
Confidence 478898 999999999999999999999999999999987
No 35
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.30 E-value=0.0001 Score=82.89 Aligned_cols=45 Identities=33% Similarity=0.608 Sum_probs=38.6
Q ss_pred ceecCCCCCCCccccc-eecCCCCCcchhhhhhhc------CCCCcceEEecC
Q 003172 379 GVRCDGCGVHPITGPR-FKSKVKDDYDLCSICFAA------MGSEADYIRIDR 424 (842)
Q Consensus 379 GV~CDgC~~~PI~G~R-YKCsvC~DyDLCs~C~a~------~~~~H~firI~~ 424 (842)
.+.||+|. ..|.|.+ .||++|+|||||-.||+. |.+.|+|-.+++
T Consensus 14 ky~C~~C~-~dit~~i~ikCaeCp~fdLCl~CFs~GaE~~~H~~~H~Yrim~~ 65 (438)
T KOG0457|consen 14 KYNCDYCS-LDITGLIRIKCAECPDFDLCLQCFSVGAETGKHQNDHPYRIMDT 65 (438)
T ss_pred CCCCccHh-HHhccceEEEeecCCCcchhHHHHhcccccCCCCCCCCceeecC
Confidence 35899999 5688877 999999999999999987 678999966655
No 36
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=96.97 E-value=0.00084 Score=51.53 Aligned_cols=35 Identities=34% Similarity=0.491 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhh
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDL 766 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdL 766 (842)
+..|++|.+|||... ..++-|++++||++++++.|
T Consensus 3 ~~~v~~L~~mGf~~~-~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 3 EEKVQQLMEMGFSRE-QAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHTS-HH-HHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHH-HHHHHHHHcCCCHHHHHHhC
Confidence 578899999999987 89999999999999999876
No 37
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=96.58 E-value=0.0015 Score=53.15 Aligned_cols=33 Identities=30% Similarity=0.675 Sum_probs=29.3
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhcC
Q 003172 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM 413 (842)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~~ 413 (842)
+.|+.|+. .+...||+|+.+.+||||..||.+.
T Consensus 1 y~C~~Cg~-D~t~vryh~~~~~~~dLC~~CF~~G 33 (45)
T cd02336 1 YHCFTCGN-DCTRVRYHNLKAKKYDLCPSCYQEG 33 (45)
T ss_pred CcccCCCC-ccCceEEEecCCCccccChHHHhCc
Confidence 36999994 6778999999999999999999873
No 38
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.34 E-value=0.0014 Score=71.73 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=39.0
Q ss_pred ceecCCCCCCCccccceecCCCCCcchhhhhhhc------CCCCcceEEecC
Q 003172 379 GVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADYIRIDR 424 (842)
Q Consensus 379 GV~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~------~~~~H~firI~~ 424 (842)
-+.||.|...-..-++-+|..|++||||-.||.+ |++.|.|-.|.+
T Consensus 5 k~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~~g~~tg~H~pyH~YRiiet 56 (432)
T COG5114 5 KIHCDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPYHGYRIIET 56 (432)
T ss_pred eeeehHHHHhhhcceeeeeecccccceehhhhhccccccccCCCCCeeEeec
Confidence 3789999876666789999999999999999987 688899966655
No 39
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=96.23 E-value=0.025 Score=52.73 Aligned_cols=61 Identities=30% Similarity=0.540 Sum_probs=49.6
Q ss_pred EEEe-CCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEe--cCCCC-EEEEcCChhHHHHHH
Q 003172 8 KVKY-GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYV--DEDGD-IVTLVDDDDLCDVMR 76 (842)
Q Consensus 8 Kv~~-gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~--DeDGD-~VTL~dd~DL~~a~~ 76 (842)
|++| ||+.|-..++ + ++.+..|..|+.+.|++..+ ++|+|. ++|-| +|+|.+|+||...+.
T Consensus 16 ~l~Y~GG~tr~i~V~-r-----~~s~~el~~kl~~~~~~~~~--~~lky~Lp~edld~Lisv~~DeDl~~M~~ 80 (97)
T cd06410 16 QLRYVGGETRIVSVD-R-----SISFKELVSKLSELFGAGVV--VTLKYQLPDEDLDALISVSNDEDLKNMME 80 (97)
T ss_pred CEEEcCCceEEEEEc-C-----CCCHHHHHHHHHHHhCCCCc--eEEEEEcCCCCcceeEEecCcHHHHHHHH
Confidence 4455 5567777776 2 38999999999999998644 899997 88888 999999999998776
No 40
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=95.98 E-value=0.0089 Score=64.63 Aligned_cols=84 Identities=24% Similarity=0.469 Sum_probs=68.6
Q ss_pred ccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCceE
Q 003172 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (842)
Q Consensus 3 ~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~L 82 (842)
+++.||-||+-.-|||.++-..-+ .+..+...++.+-+| ++.+|.|-|.|--||+.-|..|+.|..|+..---.|
T Consensus 17 ~~veVKSKFdaEfRRfsl~r~~~~----~f~~F~~Lv~~~H~i-~nvdvllgY~d~hgDLLPinNDDn~~ka~~sa~PlL 91 (358)
T KOG3606|consen 17 STVEVKSKFDAEFRRFSLPRHSAS----SFDEFYSLVEHLHHI-PNVDVLLGYADTHGDLLPINNDDNLHKALSSARPLL 91 (358)
T ss_pred ceEEeeccccchhheecccccCcc----cHHHHHHHHHHHhcC-CCceEEEEEecCCCceecccCchhHHHHhhccCchh
Confidence 578999999999999999955332 666777778888888 489999999999999999999999999988322248
Q ss_pred EEEEEecCC
Q 003172 83 RIDVHLNND 91 (842)
Q Consensus 83 rI~V~l~~~ 91 (842)
||.||-...
T Consensus 92 R~~iQkr~e 100 (358)
T KOG3606|consen 92 RLLIQKREE 100 (358)
T ss_pred hhhhhhhhh
Confidence 888886543
No 41
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=95.78 E-value=0.022 Score=51.94 Aligned_cols=61 Identities=25% Similarity=0.400 Sum_probs=46.2
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccE-EEEecCCCCEEEEcCChhHHH
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLT-LTYVDEDGDIVTLVDDDDLCD 73 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~-lrY~DeDGD~VTL~dd~DL~~ 73 (842)
|-||+..|+++ --.+. -...|+++.+...|++++ +++..+ +-|-|||||-||+-+|+++..
T Consensus 3 IRIk~p~gg~v---Dw~V~--~~~~L~F~DvL~~I~~vl---p~aT~tAFeYEDE~gDRITVRSDeEm~A 64 (91)
T cd06395 3 IRIKIPNGGAV---DWTVQ--SGPQLLFRDVLDVIGQVL---PEATTTAFEYEDEDGDRITVRSDEEMKA 64 (91)
T ss_pred EEEeCCCCCcc---ccccc--CcccccHHHHHHHHHHhc---ccccccceeeccccCCeeEecchHHHHH
Confidence 56777777765 22222 135699999999999998 344444 499999999999999999764
No 42
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=95.27 E-value=0.026 Score=42.99 Aligned_cols=36 Identities=31% Similarity=0.471 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhh
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLC 767 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLc 767 (842)
++.+.+|.+|||. .+...+-|+++++|++.+++-|-
T Consensus 2 ~~~v~~L~~mGf~-~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 2 EEKLEQLLEMGFS-REEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHhCCCHHHHHHHHh
Confidence 3467899999999 89999999999999999998774
No 43
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=94.90 E-value=0.066 Score=49.54 Aligned_cols=46 Identities=26% Similarity=0.499 Sum_probs=40.3
Q ss_pred cccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH
Q 003172 28 LDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR 76 (842)
Q Consensus 28 ~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~ 76 (842)
..-.+-.|...|++.|+ ..++.|.|.|-+||+|.|-||+|+...++
T Consensus 26 ~~P~~kdLl~lmr~~f~---~~dIaLNYrD~EGDLIRllddeDv~LMV~ 71 (92)
T cd06399 26 STPLLKDLLELTRREFQ---REDIALNYRDAEGDLIRLLSDEDVALMVR 71 (92)
T ss_pred cCccHHHHHHHHHHHhc---hhheeeeeecCCCCEEEEcchhhHHHHHH
Confidence 34567889999999996 55999999999999999999999988766
No 44
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=94.74 E-value=0.04 Score=41.82 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhh
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDL 766 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdL 766 (842)
++.+.+|.+|||... ...+.|++++||++++++-|
T Consensus 2 ~~~v~~L~~mGf~~~-~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 2 EEKIDQLLEMGFSRE-EALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHHHcCCCHH-HHHHHHHHhCCCHHHHHHHH
Confidence 456789999999887 88999999999999999866
No 45
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=93.73 E-value=0.18 Score=44.25 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=46.6
Q ss_pred CCcccCCCCcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEE
Q 003172 489 DGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYI 564 (842)
Q Consensus 489 DGT~V~PGt~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGEevdVSV~L~AP~~pG~Yi 564 (842)
.-..+.+|+.++-+|+|+|.|.... .++.+.+..++... . ...+..++||++..+++.+.++ .+|.|.
T Consensus 11 ~~~~~~~g~~~~i~~~V~N~G~~~~-~~~~v~~~~~~~~~--~----~~~i~~L~~g~~~~v~~~~~~~-~~G~~~ 78 (101)
T PF07705_consen 11 SPSNVVPGEPVTITVTVKNNGTADA-ENVTVRLYLDGNSV--S----TVTIPSLAPGESETVTFTWTPP-SPGSYT 78 (101)
T ss_dssp C-SEEETTSEEEEEEEEEE-SSS-B-EEEEEEEEETTEEE--E----EEEESEB-TTEEEEEEEEEE-S-S-CEEE
T ss_pred CCCcccCCCEEEEEEEEEECCCCCC-CCEEEEEEECCcee--c----cEEECCcCCCcEEEEEEEEEeC-CCCeEE
Confidence 4457888999999999999999985 56777655443222 1 1223578999999999999988 889887
No 46
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=93.72 E-value=0.35 Score=43.98 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=49.9
Q ss_pred EEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCC--EEEEcCChhHHHHHH-ccCceEEEE
Q 003172 18 FNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGD--IVTLVDDDDLCDVMR-QRLKFLRID 85 (842)
Q Consensus 18 f~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD--~VTL~dd~DL~~a~~-q~l~~LrI~ 85 (842)
|++-++- .--+++..|+.||++-|.++++. ..|.|++++.+ +|.|..++|+.+|-+ .+-.+|++-
T Consensus 7 fTVai~v--~~g~~y~~L~~~ls~kL~l~~~~-~~LSY~~~~~~~~~v~l~~e~~me~aW~~v~~~~ltLw 74 (78)
T cd06411 7 FTVALRA--PRGADVSSLRALLSQALPQQAQR-GQLSYRAPGEDGHWVPISGEESLQRAWQDVADGPRGLQ 74 (78)
T ss_pred EEEEEEc--cCCCCHHHHHHHHHHHhcCChhh-cEEEecCCCCCccEeecCcchHHHHHHHhccCCceEEE
Confidence 5555543 23588999999999999998776 89999998885 666776999999877 455556553
No 47
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=92.37 E-value=0.48 Score=53.45 Aligned_cols=79 Identities=27% Similarity=0.439 Sum_probs=63.0
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH----ccC
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR----QRL 79 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~----q~l 79 (842)
.+-+|+.|+|++ |-.+++ ..+.+..|-..++..-++.-...|+++|.||+||-+|+++.-+|.+|.+ .+-
T Consensus 15 ~vrlka~y~g~i--~i~~~~----p~~~~e~~~~~vrd~c~~h~~q~~t~kwideegdp~tv~sqmeleea~r~~~~~~d 88 (593)
T KOG0695|consen 15 RVRLKAHYGGDI--FITSVD----PATTFEELCEEVRDMCRLHQQQPLTLKWIDEEGDPCTVSSQMELEEAFRLARQCRD 88 (593)
T ss_pred cEEEEEeecCcE--EEEecc----CcccHHHHHHHHHHHHHHhhcCCceeEeecCCCCcceechhhhHHHHHHHHHhccc
Confidence 588999999987 333433 2578888888888888888888999999999999999999999988654 344
Q ss_pred ceEEEEEEe
Q 003172 80 KFLRIDVHL 88 (842)
Q Consensus 80 ~~LrI~V~l 88 (842)
..|-|-|.+
T Consensus 89 ~el~ihvf~ 97 (593)
T KOG0695|consen 89 EELIIHVFP 97 (593)
T ss_pred cceEEEEcc
Confidence 567777774
No 48
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.73 E-value=0.16 Score=58.33 Aligned_cols=61 Identities=33% Similarity=0.349 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhh-------ccccchhH------HHHHHhcccccccc
Q 003172 728 AVEQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLC-------GVSEWDPI------LEELQEMVSSYVKT 789 (842)
Q Consensus 728 ~~e~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLc-------g~~Ewdpl------leEl~Emgf~d~~~ 789 (842)
.|-..+|.-|.+|||- .-|-.|+||+||.|++++||+|= +-.-|-|- |.||+-|||.--..
T Consensus 373 wvn~rs~~rL~~mGye-r~la~eaL~r~~Ndi~~aldllq~esdel~~n~~~~p~~vd~~~la~Lv~mGF~e~~A 446 (568)
T KOG2561|consen 373 WVNPRSLERLVSMGYE-RELAAEALRRNENDIQKALDLLQDESDELESNKPKRPEQVDGISLAELVSMGFEEGKA 446 (568)
T ss_pred ccCHHHHHHHHhcchH-hHHHHHHHHhccCcHHHHHHhcCCcchhhhccCCCCCcccchhhHHHHHHhccccchH
Confidence 3344566789999996 46899999999999999999876 45557765 99999999986543
No 49
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=91.17 E-value=2.2 Score=38.44 Aligned_cols=77 Identities=13% Similarity=0.258 Sum_probs=53.6
Q ss_pred ccCCCCcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEEEEEEEEC
Q 003172 492 MMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSS 571 (842)
Q Consensus 492 ~V~PGt~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGEevdVSV~L~AP~~pG~YiSyWRL~t 571 (842)
.+..|+.-.++=+|+|.|... +++.+........ ...++..-..++||+++++.|.|.++...|.|...-.+.+
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p----~~f~v~~~~~~~~--~~~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~ 88 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIP----ARFRVRQPESLSS--FFSVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLVITT 88 (102)
T ss_pred EEccCCEEEEEEEEEECCCCC----EEEEEEeCCcCCC--CEEEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEEEEE
Confidence 466889999999999999874 3333322221211 1122222335899999999999998899999998888876
Q ss_pred CCC
Q 003172 572 PSG 574 (842)
Q Consensus 572 pdG 574 (842)
..|
T Consensus 89 e~~ 91 (102)
T PF14874_consen 89 EGG 91 (102)
T ss_pred CCe
Confidence 544
No 50
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=89.94 E-value=1.4 Score=50.20 Aligned_cols=87 Identities=15% Similarity=0.210 Sum_probs=55.9
Q ss_pred CCCCcEEEEEE-EEcCCCCCCCCCcEEEEecCCCCC-------C-CCceeeeccCCCCCCCCEEEEEEEEecCCCCceEE
Q 003172 494 APSTPFTKIWR-MRNTGNLAWPRGSQLVWIGGDKFS-------D-GVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYI 564 (842)
Q Consensus 494 ~PGt~FtKtWr-LrNsGt~~WP~Gt~LvfvgGD~m~-------~-~~sv~l~IPv~~V~PGEevdVSV~L~AP~~pG~Yi 564 (842)
.||+.-.|.=. |.|+|+++ .+..|...+... . ....-+.---..+.|||+..|.|.|+ |..+|.|.
T Consensus 244 ~p~e~~~~~v~~l~N~Gt~~----I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~-s~~~Gif~ 318 (426)
T PF14646_consen 244 HPGERVSKEVVRLENNGTTA----IYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFK-SRKVGIFK 318 (426)
T ss_pred ccCceeeEEEEEEecCCceE----EEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEe-CCCceEEE
Confidence 57888888888 99999975 233333332211 0 01111121223478999999999999 79999999
Q ss_pred EEEEEECCCCCccC-CeEEEEEE
Q 003172 565 SYWRMSSPSGVKFG-QRVWVLIQ 586 (842)
Q Consensus 565 SyWRL~tpdG~~FG-drLWV~I~ 586 (842)
..|+|.+. =..|| ..|-+.+.
T Consensus 319 E~W~L~t~-P~l~~~~~l~v~L~ 340 (426)
T PF14646_consen 319 ERWELRTF-PPLFGGASLTVRLH 340 (426)
T ss_pred EEEEEEEe-ccccCCCceEEEEE
Confidence 99999983 33344 55444443
No 51
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=88.74 E-value=0.24 Score=36.65 Aligned_cols=28 Identities=43% Similarity=0.920 Sum_probs=13.3
Q ss_pred ecCCCCCCCccc-cceecCCCCCcchhhhhh
Q 003172 381 RCDGCGVHPITG-PRFKSKVKDDYDLCSICF 410 (842)
Q Consensus 381 ~CDgC~~~PI~G-~RYKCsvC~DyDLCs~C~ 410 (842)
.|+.|+ .++.| ..|.|..| ||+|...|.
T Consensus 2 ~C~~C~-~~~~~~~~Y~C~~C-df~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACG-KPIDGGWFYRCSEC-DFDLHEECA 30 (30)
T ss_dssp --TTTS-----S--EEE-TTT------HHHH
T ss_pred cCCcCC-CcCCCCceEECccC-CCccChhcC
Confidence 699999 57887 99999999 699988873
No 52
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=88.04 E-value=3.5 Score=36.00 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=42.0
Q ss_pred cCCCCcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCC--CceEEEEEEE
Q 003172 493 MAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPEL--PGRYISYWRM 569 (842)
Q Consensus 493 V~PGt~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGEevdVSV~L~AP~~--pG~YiSyWRL 569 (842)
+.||+.++-+=+|+|.|.... .+..|..-.-+-.. ....+..++ .|+||+++.+++.+..|.. +|.|.--.++
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~-~~v~~~l~~P~GW~-~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~a 75 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPL-TNVSLSLSLPEGWT-VSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVTVTA 75 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-B-SS-EEEEE--TTSE----EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCce-eeEEEEEeCCCCcc-ccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEEEEEE
Confidence 468999999999999998876 56666544321111 111122333 6899999999999999966 8998654443
No 53
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=80.59 E-value=4 Score=34.42 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=41.0
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a 74 (842)
|.|+|++++.. +.+.+.. +.+...|.++|++.++++++ ...|.|. |.. |.|+..|.++
T Consensus 1 i~i~vk~~g~~--~~i~v~~----~~tv~~lK~~i~~~~gi~~~-~q~L~~~---g~~--l~d~~~L~~~ 58 (71)
T cd01812 1 IRVRVKHGGES--HDLSISS----QATFGDLKKMLAPVTGVEPR-DQKLIFK---GKE--RDDAETLDMS 58 (71)
T ss_pred CEEEEEECCEE--EEEEECC----CCcHHHHHHHHHHhhCCChH-HeEEeeC---Ccc--cCccCcHHHc
Confidence 56889998644 5666664 57899999999999999765 5677776 332 4555556553
No 54
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=77.72 E-value=1.5 Score=32.71 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=23.2
Q ss_pred ecCCCCCCCcccc-ceecCCCCCcchhhhh
Q 003172 381 RCDGCGVHPITGP-RFKSKVKDDYDLCSIC 409 (842)
Q Consensus 381 ~CDgC~~~PI~G~-RYKCsvC~DyDLCs~C 409 (842)
.|+.|+ ..+.|. .|+|..|. |++-..|
T Consensus 2 ~C~~C~-~~~~~~~~Y~C~~c~-f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCR-RKIDGFYFYHCSECC-FTLHVRC 29 (30)
T ss_pred CCCCCC-CCcCCCEeEEeCCCC-CeEcCcc
Confidence 599998 678999 99999997 8887766
No 55
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=74.74 E-value=4.6 Score=31.90 Aligned_cols=37 Identities=27% Similarity=0.546 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCccch--hhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVD--LNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~d--lnkEiLr~n~YdLeqsvDdLcg 768 (842)
+..++.|.+| |=+++ .-+.+|++|++|+|++++.|..
T Consensus 3 ~~~v~~L~~m-FP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 3 DEALHDLKDM-FPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3467899999 99854 6678999999999999999853
No 56
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=73.98 E-value=5.3 Score=31.52 Aligned_cols=35 Identities=29% Similarity=0.594 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCcc--chhhHHHHHhccCchhhhHhhh
Q 003172 731 QTLLRELEEMGFKQ--VDLNKEILRMNEYDLEQSVDDL 766 (842)
Q Consensus 731 ~~ll~eLe~MGFkq--~dlnkEiLr~n~YdLeqsvDdL 766 (842)
+..++.|.+| |=+ .+..+.+|++|++|+|.+++.|
T Consensus 2 ~~~v~~L~~m-FP~~~~~~I~~~L~~~~~~ve~ai~~L 38 (42)
T PF02845_consen 2 EEMVQQLQEM-FPDLDREVIEAVLQANNGDVEAAIDAL 38 (42)
T ss_dssp HHHHHHHHHH-SSSS-HHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3567788888 666 5677899999999999999987
No 57
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=70.35 E-value=11 Score=30.50 Aligned_cols=56 Identities=30% Similarity=0.415 Sum_probs=40.6
Q ss_pred EEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHH
Q 003172 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (842)
Q Consensus 6 ~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~ 73 (842)
.|.|+..+ +.+.+.+.. +.+...|+++|++.++++++ .+.|.|. |- .|.|+..|.+
T Consensus 2 ~i~vk~~~--~~~~~~v~~----~~tv~~lk~~i~~~~~~~~~-~~~L~~~---g~--~L~d~~tL~~ 57 (64)
T smart00213 2 ELTVKTLD--GTITLEVKP----SDTVSELKEKIAELTGIPVE-QQRLIYK---GK--VLEDDRTLAD 57 (64)
T ss_pred EEEEEECC--ceEEEEECC----CCcHHHHHHHHHHHHCCCHH-HEEEEEC---CE--ECCCCCCHHH
Confidence 46677776 566777664 46899999999999999755 6788886 32 3666666655
No 58
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=69.04 E-value=2.3 Score=47.48 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=34.5
Q ss_pred ceecCCCCCCCccccceecCCCCCcchhhhhhhcCCCCcceEEec
Q 003172 379 GVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRID 423 (842)
Q Consensus 379 GV~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~~~~~H~firI~ 423 (842)
..+|..|.. .. ..+|.|.+|++||.|.+|+.+....|.|..+.
T Consensus 169 ~~~c~~c~~-~~-~~~~~c~~~~d~d~~~~~~~k~~h~h~~~~~~ 211 (319)
T KOG1778|consen 169 AYTCPICKL-EV-LTAWHCEVCPDYDRCRACEEKPLHPHLYEAME 211 (319)
T ss_pred eeecCcccc-cc-ccccccccCCchhhhhcccCCCCCCcchhccc
Confidence 368999994 34 88999999999999999999865667665443
No 59
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=67.17 E-value=27 Score=31.50 Aligned_cols=61 Identities=30% Similarity=0.427 Sum_probs=39.6
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEE-EcCChhH
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVT-LVDDDDL 71 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VT-L~dd~DL 71 (842)
++.|++.. ..|.....+.. .++...|+.|+.++|++++.. ..|.|-|.+|..|. |++|...
T Consensus 3 ~v~i~~~~--~~~~~ekr~~~----~~Tv~~lK~kl~~~~G~~~~~-mrL~l~~~~~~~~~~l~~d~~~ 64 (84)
T cd01789 3 TVNITSSA--DSFSFEKKYSR----GLTIAELKKKLELVVGTPASS-MRLQLFDGDDKLVSKLDDDDAL 64 (84)
T ss_pred EEEEEeCC--CceeeeEecCC----CCcHHHHHHHHHHHHCCCccc-eEEEEEcCCCCeEeecCCCccE
Confidence 35566655 35555544442 599999999999999997664 66654455555544 6555553
No 60
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=64.24 E-value=12 Score=33.88 Aligned_cols=50 Identities=24% Similarity=0.471 Sum_probs=30.6
Q ss_pred CcccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecC
Q 003172 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDE 58 (842)
Q Consensus 1 m~~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~De 58 (842)
|++.++|.|+=-|-..|+.+.- +=++..|.+||++.|+++.+ .+.| |.|.
T Consensus 1 ~~~~milRvrS~dG~~Rie~~~------~~t~~~L~~kI~~~l~~~~~-~~~L-~~~~ 50 (80)
T PF11543_consen 1 MASSMILRVRSKDGMKRIEVSP------SSTLSDLKEKISEQLSIPDS-SQSL-SKDR 50 (80)
T ss_dssp -----EEEEE-SSEEEEEEE-T------TSBHHHHHHHHHHHS---TT-T----BSSG
T ss_pred CCccEEEEEECCCCCEEEEcCC------cccHHHHHHHHHHHcCCCCc-ceEE-EecC
Confidence 8899999999999999999882 34799999999999999755 6666 5554
No 61
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=63.34 E-value=7.8 Score=33.43 Aligned_cols=45 Identities=36% Similarity=0.477 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhccccchhHHHHH
Q 003172 730 EQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEEL 779 (842)
Q Consensus 730 e~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~~EwdplleEl 779 (842)
...++.+++.|||- .|--=|.||+-+|+=-..+|.. -=|-|||||
T Consensus 9 ~~~lVd~F~~mGF~-~dkVvevlrrlgik~~n~~dn~----t~~~ilEEL 53 (55)
T PF09288_consen 9 DKDLVDQFENMGFE-RDKVVEVLRRLGIKSMNGVDNE----TENKILEEL 53 (55)
T ss_dssp SHHHHHHHHHHT---HHHHHHHHHHS--SS--SS--H----HHHHHHHHH
T ss_pred CHHHHHHHHHcCCc-HHHHHHHHHHhCCCCCCCccch----hHHHHHHHH
Confidence 46778999999995 5666789999888653333331 146788887
No 62
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=61.85 E-value=43 Score=29.98 Aligned_cols=61 Identities=23% Similarity=0.456 Sum_probs=39.9
Q ss_pred EEEEEEeCCe-eeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEe-cCCCCEEEEcCChh
Q 003172 5 MVIKVKYGDT-LRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYV-DEDGDIVTLVDDDD 70 (842)
Q Consensus 5 i~IKv~~gd~-lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~-DeDGD~VTL~dd~D 70 (842)
|.|-|..... .|.+...+.. +++...|+.||..+++++++ ...|.|. |++|..+...+|++
T Consensus 2 v~l~It~~~~~~~~~ekr~~~----~~Tv~eLK~kl~~~~Gi~~~-~m~L~l~~~~~~~~~~~~~dd~ 64 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPK----SITVSELKQKLEKLTGIPPS-DMRLQLKSDKDDSKIEELDDDD 64 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEET----TSBHHHHHHHHHHHHTS-TT-TEEEEEE-TSSSSEEEESSGSS
T ss_pred EEEEEEeCCCCCeeEEEEcCC----CCCHHHHHHHHHHHhCCCcc-cEEEEEEecCCCccccccCCCc
Confidence 3444555544 1444444443 48999999999999999765 6666666 77777776665444
No 63
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=61.31 E-value=27 Score=30.18 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=49.6
Q ss_pred CCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEE-ecCCCCEEEEcCChhHHHHHHc
Q 003172 12 GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTY-VDEDGDIVTLVDDDDLCDVMRQ 77 (842)
Q Consensus 12 gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY-~DeDGD~VTL~dd~DL~~a~~q 77 (842)
+|..+.|.+.-+ -+...|-++|++-++|....-|.|.| .|.+|...-|+.+.-|.+.+..
T Consensus 5 D~~~~~~~v~~~------~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 5 DGTTKTFEVDPK------TTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp SEEEEEEEEETT------SBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcEEEEEcCC------CcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 455778888733 45888999999999999999999999 8999999999999998885443
No 64
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=59.91 E-value=3 Score=43.58 Aligned_cols=73 Identities=22% Similarity=0.370 Sum_probs=0.0
Q ss_pred EEEEEEeCCe--eeeEEeeecCCCCcccCHHHHHHHHHHHh---CCC----------------CCCccEEEEecCCCCEE
Q 003172 5 MVIKVKYGDT--LRRFNARVDENEKLDLDIDGLRAKIKSLF---NFP----------------HDSDLTLTYVDEDGDIV 63 (842)
Q Consensus 5 i~IKv~~gd~--lRRf~~~l~~n~~~dl~~~~L~~ki~~lf---~l~----------------~d~~~~lrY~DeDGD~V 63 (842)
.-+||.-.|. .|++-|..- =.+..|...+..+| .+. ...+++|+|.|.+||+.
T Consensus 110 ~~vKV~mdG~~igRkVDL~~~------~sY~~L~~~L~~MF~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~m 183 (215)
T PF02309_consen 110 SYVKVNMDGVPIGRKVDLSAY------SSYEELSSALEKMFSCFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWM 183 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEEecCcccceecCHHHh------hCHHHHHHHHHHhcCCCCccccccccccchhhccccCCcceeEEEECCCCCEE
Confidence 4578888774 566655532 24566777777888 443 34688999999999985
Q ss_pred EEcCChhHHHHHHccCceEEEE
Q 003172 64 TLVDDDDLCDVMRQRLKFLRID 85 (842)
Q Consensus 64 TL~dd~DL~~a~~q~l~~LrI~ 85 (842)
.+ -|..-...+. -.++|||.
T Consensus 184 lv-GD~PW~~F~~-~vkRl~I~ 203 (215)
T PF02309_consen 184 LV-GDVPWEEFVK-SVKRLRIM 203 (215)
T ss_dssp ----------------------
T ss_pred Ee-cCCCHHHHHH-HhhccEEe
Confidence 54 4555554444 23456663
No 65
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=59.60 E-value=22 Score=31.42 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=43.8
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEE--EecCCCCEEEEcCChhHHHH
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLT--YVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lr--Y~DeDGD~VTL~dd~DL~~a 74 (842)
+.|.|+|++. +|.+.+.. +-+...|.++|++..+++++..=.|- |+ |- .+.|+.+|.++
T Consensus 1 ~~i~vk~~g~--~~~v~v~~----~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~---Gk--~l~D~~~L~~~ 61 (74)
T cd01813 1 VPVIVKWGGQ--EYSVTTLS----EDTVLDLKQFIKTLTGVLPERQKLLGLKVK---GK--PAEDDVKISAL 61 (74)
T ss_pred CEEEEEECCE--EEEEEECC----CCCHHHHHHHHHHHHCCCHHHEEEEeeccc---CC--cCCCCcCHHHc
Confidence 4678889884 56777774 58899999999999999877554442 33 43 47788888874
No 66
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=58.02 E-value=47 Score=28.22 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=37.4
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecC
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDE 58 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~De 58 (842)
|.|||+..+ -+++.+.++. +-.+..|-++.++..+++++.++.|.|..+
T Consensus 1 I~i~v~~~~-~~~~~~~v~~----~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~ 49 (72)
T PF11976_consen 1 ITIKVRSQD-GKEIKFKVKP----TTTVSKLIEKYCEKKGIPPEESIRLIFDGK 49 (72)
T ss_dssp EEEEEEETT-SEEEEEEEET----TSCCHHHHHHHHHHHTTTT-TTEEEEETTE
T ss_pred CEEEEEeCC-CCEEEEEECC----CCcHHHHHHHHHHhhCCCccceEEEEECCE
Confidence 467777765 3477777774 478889999999999998878999999543
No 67
>COG1470 Predicted membrane protein [Function unknown]
Probab=52.57 E-value=1.1e+02 Score=36.63 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=69.0
Q ss_pred CcceEEeeeeccCCC---cccCCCCcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEE
Q 003172 476 RLDSCFILDVNVLDG---TMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAV 552 (842)
Q Consensus 476 kL~A~FV~DVTIpDG---T~V~PGt~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGEevdVSV 552 (842)
+...++..+++++.| ..+.||+.-+--=.+-|.|+.+- .+..|.--+ .++-...+. +--++.+.|||...|++
T Consensus 373 ~~~g~~~~~v~l~~g~~~lt~taGee~~i~i~I~NsGna~L-tdIkl~v~~--PqgWei~Vd-~~~I~sL~pge~~tV~l 448 (513)
T COG1470 373 KNTGSYNELVKLDNGPYRLTITAGEEKTIRISIENSGNAPL-TDIKLTVNG--PQGWEIEVD-ESTIPSLEPGESKTVSL 448 (513)
T ss_pred EeccccceeEEccCCcEEEEecCCccceEEEEEEecCCCcc-ceeeEEecC--CccceEEEC-cccccccCCCCcceEEE
Confidence 345566667777775 47899999998899999999877 666664332 222100110 11245899999999999
Q ss_pred EEecCCC--CceEEEEEEEECCCCCccCCeEEE
Q 003172 553 DFTAPEL--PGRYISYWRMSSPSGVKFGQRVWV 583 (842)
Q Consensus 553 ~L~AP~~--pG~YiSyWRL~tpdG~~FGdrLWV 583 (842)
+.++|+. +|.|.-..+-.+. -.---++|.|
T Consensus 449 tI~vP~~a~aGdY~i~i~~ksD-q~s~e~tlrV 480 (513)
T COG1470 449 TITVPEDAGAGDYRITITAKSD-QASSEDTLRV 480 (513)
T ss_pred EEEcCCCCCCCcEEEEEEEeec-cccccceEEE
Confidence 9999965 7788877777653 2234444433
No 68
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=51.88 E-value=41 Score=28.51 Aligned_cols=71 Identities=25% Similarity=0.389 Sum_probs=46.4
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCceEEE
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~LrI 84 (842)
|.||...| |.|.+.+.. +.+...|+.+|++.++++++ +..|.|. |. .|.|+..|.++=-+.-..|.+
T Consensus 3 i~v~~~~g---~~~~~~v~~----~~tV~~lK~~i~~~~g~~~~-~q~L~~~---g~--~L~d~~~L~~~~i~~~~~i~l 69 (76)
T cd01803 3 IFVKTLTG---KTITLEVEP----SDTIENVKAKIQDKEGIPPD-QQRLIFA---GK--QLEDGRTLSDYNIQKESTLHL 69 (76)
T ss_pred EEEEcCCC---CEEEEEECC----cCcHHHHHHHHHHHhCCCHH-HeEEEEC---CE--ECCCCCcHHHcCCCCCCEEEE
Confidence 45555444 445677664 57899999999999999754 6777784 43 367777777742233445555
Q ss_pred EEEe
Q 003172 85 DVHL 88 (842)
Q Consensus 85 ~V~l 88 (842)
.+.+
T Consensus 70 ~~~~ 73 (76)
T cd01803 70 VLRL 73 (76)
T ss_pred EEEc
Confidence 5543
No 69
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=51.11 E-value=84 Score=31.25 Aligned_cols=93 Identities=14% Similarity=0.152 Sum_probs=55.5
Q ss_pred ceEEeeeeccCCCcccCCCCcEEEEEEEEcCCCCCCCC-CcEEEEecCCCCCCCCce-----eeeccCCCCCCCCEEEEE
Q 003172 478 DSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPR-GSQLVWIGGDKFSDGVSV-----EIEVPADGVPVEGEIDIA 551 (842)
Q Consensus 478 ~A~FV~DVTIpDGT~V~PGt~FtKtWrLrNsGt~~WP~-Gt~LvfvgGD~m~~~~sv-----~l~IPv~~V~PGEevdVS 551 (842)
+.+|+.+.+-|+-.+. .|-=+=+|+|.|.++|-- +.+-.-.+|+ +.++.| -=+.| -++||++..-+
T Consensus 13 ~~~yleeQS~P~~~Ry----vfaYtitI~N~g~~~vqLlsR~W~ITd~~--g~v~eV~G~GVVGeQP--~l~PG~~y~Yt 84 (126)
T COG2967 13 QPRYLEEQSSPEEERY----VFAYTVTIRNLGEVPVQLLSRYWLITDGN--GRVTEVEGEGVVGEQP--LLAPGEEYQYT 84 (126)
T ss_pred eeEEccccCCcccceE----EEEEEEEEecCCCccceeeeeEEEEecCC--CcEEEEEcCceecccc--ccCCCCceEEc
Confidence 3455555555554332 456666789999988831 2222233333 222211 11233 48999998877
Q ss_pred EEEecCCCCceEEEEEEEECCCCCccC
Q 003172 552 VDFTAPELPGRYISYWRMSSPSGVKFG 578 (842)
Q Consensus 552 V~L~AP~~pG~YiSyWRL~tpdG~~FG 578 (842)
=--.-....|.-.+++.|.+.+|..|-
T Consensus 85 Sg~~l~Tp~G~M~GhY~M~~e~G~~F~ 111 (126)
T COG2967 85 SGCPLDTPSGTMQGHYEMIDEDGETFD 111 (126)
T ss_pred CCcCccCCcceEEEEEEEecCCCcEEE
Confidence 433334457999999999999998774
No 70
>PF11325 DUF3127: Domain of unknown function (DUF3127); InterPro: IPR021474 This bacterial family of proteins has no known function.
Probab=49.90 E-value=44 Score=31.06 Aligned_cols=49 Identities=27% Similarity=0.544 Sum_probs=38.2
Q ss_pred CCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceE---EEEEEE
Q 003172 511 LAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRY---ISYWRM 569 (842)
Q Consensus 511 ~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGEevdVSV~L~AP~~pG~Y---iSyWRL 569 (842)
..+|...++.+.+ |.... +..+++|++|.|+.++.+=+-.|+| +.-||+
T Consensus 32 ~qYP~~i~f~~~~-dk~~~---------l~~~~~Gd~V~Vsf~i~~RE~~gr~fn~i~aWri 83 (84)
T PF11325_consen 32 EQYPQKICFEFWG-DKIDL---------LDNFQVGDEVKVSFNIEGREWNGRWFNSIRAWRI 83 (84)
T ss_pred CcCCceEEEEEEc-chhhh---------hccCCCCCEEEEEEEeeccEecceEeeEeEEEEe
Confidence 4699999998887 54332 1257899999999999998888988 467875
No 71
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=49.25 E-value=1.2e+02 Score=28.17 Aligned_cols=72 Identities=22% Similarity=0.386 Sum_probs=55.2
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHc-----cC
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ-----RL 79 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q-----~l 79 (842)
+-||.-|.|.-|-+.++ | .+-+..|+.|+..+|+.+ +-|-|+.-. =.|-|-..+||-.|+.. -+
T Consensus 1 vRiKfE~~gEKRIi~f~-R-----Pvkf~dl~~kv~~afGq~----mdl~ytn~e-L~iPl~~Q~DLDkAie~ld~s~~~ 69 (79)
T cd06405 1 VRIKFEHNGEKRIIQFP-R-----PVKFKDLQQKVTTAFGQP----MDLHYTNNE-LLIPLKNQEDLDRAIELLDRSPHM 69 (79)
T ss_pred CeEEEEecCceEEEecC-C-----CccHHHHHHHHHHHhCCe----eeEEEeccc-EEEeccCHHHHHHHHHHHccCccc
Confidence 35899999988888888 3 488999999999999763 556777653 67888899999888761 34
Q ss_pred ceEEEEEE
Q 003172 80 KFLRIDVH 87 (842)
Q Consensus 80 ~~LrI~V~ 87 (842)
+-|||.+.
T Consensus 70 ksLRilL~ 77 (79)
T cd06405 70 KSLRILLS 77 (79)
T ss_pred cceeEeEe
Confidence 45777654
No 72
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=47.12 E-value=70 Score=26.80 Aligned_cols=57 Identities=25% Similarity=0.422 Sum_probs=39.6
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a 74 (842)
|.||...|. .+.+.+.. +.+...|+++|++.++++++ ...|.|. |. .|.|+..|.++
T Consensus 3 i~vk~~~g~---~~~~~v~~----~~tv~~lK~~i~~~~gi~~~-~q~L~~~---g~--~L~d~~~L~~~ 59 (72)
T cd01809 3 IKVKTLDSQ---THTFTVEE----EITVLDLKEKIAEEVGIPVE-QQRLIYS---GR--VLKDDETLSEY 59 (72)
T ss_pred EEEEeCCCC---EEEEEECC----CCcHHHHHHHHHHHHCcCHH-HeEEEEC---CE--ECCCcCcHHHC
Confidence 455655544 34555553 47899999999999999755 6778884 54 46677777774
No 73
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=46.85 E-value=16 Score=28.30 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=29.9
Q ss_pred ceecCCCCCCCccccceecCCCCCcchhhhhhhcCCCCcceEEe
Q 003172 379 GVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRI 422 (842)
Q Consensus 379 GV~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~~~~~H~firI 422 (842)
...|+.|.. .-.+|-|..|.. -+|..|....|..|.+..|
T Consensus 3 ~~~C~~H~~---~~~~~~C~~C~~-~~C~~C~~~~H~~H~~~~i 42 (42)
T PF00643_consen 3 EPKCPEHPE---EPLSLFCEDCNE-PLCSECTVSGHKGHKIVPI 42 (42)
T ss_dssp SSB-SSTTT---SBEEEEETTTTE-EEEHHHHHTSTTTSEEEEC
T ss_pred CccCccCCc---cceEEEecCCCC-ccCccCCCCCCCCCEEeEC
Confidence 346777773 337899999985 6999999987778988654
No 74
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=45.57 E-value=8.7 Score=47.26 Aligned_cols=60 Identities=30% Similarity=0.498 Sum_probs=50.0
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHH
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~ 73 (842)
..+|.-|++++|+=.++++ -++..||+-|.. +++-..+-|+|.|-+||.||+.+...|..
T Consensus 290 ~~~~~v~~~~i~laql~~~------~~~~~lR~ii~~---~~~~~~v~ik~~~~~~~~vtit~~a~l~l 349 (748)
T KOG4151|consen 290 RTLKLVYGDDIRLAQLPLN------CTVKILREIIHS---FPSLRAVLIKYRDTEGDLVTITTTAELRL 349 (748)
T ss_pred hhhhhhhccHHHHHhcchh------hchHHHHHHHhc---ccchhhheeeeccCCcceeeeeehhhhhh
Confidence 4567788888888888855 678888888877 46667899999999999999999999886
No 75
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=44.06 E-value=17 Score=30.44 Aligned_cols=28 Identities=32% Similarity=0.567 Sum_probs=16.2
Q ss_pred hHHHHHhccCchhhhHhhhhccccchhHHHHHHh
Q 003172 748 NKEILRMNEYDLEQSVDDLCGVSEWDPILEELQE 781 (842)
Q Consensus 748 nkEiLr~n~YdLeqsvDdLcg~~EwdplleEl~E 781 (842)
-||||+.+-=|.||.|+|+ |.=++|||+
T Consensus 6 AkelLqe~~d~IEqkiedi------d~qIaeLe~ 33 (46)
T PF08946_consen 6 AKELLQEHYDNIEQKIEDI------DEQIAELEA 33 (46)
T ss_dssp ---------THHHHHHHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHhHHHhHHHH------HHHHHHHHH
Confidence 4899999999999999998 667778875
No 76
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=43.80 E-value=42 Score=27.02 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEE
Q 003172 503 WRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDF 554 (842)
Q Consensus 503 WrLrNsGt~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGEevdVSV~L 554 (842)
++++|.|.... .+.-+.-+.-. . ..+.+...++|||+..|.|.|
T Consensus 2 F~~~N~g~~~L----~I~~v~tsCgC--t--~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPL----VITDVQTSCGC--T--TAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcE----EEEEeeEccCC--E--EeeCCcceECCCCEEEEEEEC
Confidence 57999999865 44444433211 1 123333458999999998874
No 77
>PRK10301 hypothetical protein; Provisional
Probab=43.10 E-value=53 Score=32.02 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=27.3
Q ss_pred EEEEEEEecCCCCceEEEEEEEECCCCCccCCeEE
Q 003172 548 IDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVW 582 (842)
Q Consensus 548 vdVSV~L~AP~~pG~YiSyWRL~tpdG~~FGdrLW 582 (842)
-.++|.+..+-.+|.|.-.||....||..-.-.+-
T Consensus 86 ~~~~v~l~~~L~~G~YtV~Wrvvs~DGH~~~G~~~ 120 (124)
T PRK10301 86 KQLIVPLADSLKPGTYTVDWHVVSVDGHKTKGHYT 120 (124)
T ss_pred cEEEEECCCCCCCccEEEEEEEEecCCCccCCeEE
Confidence 44677777778999999999999999976544443
No 78
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=40.85 E-value=69 Score=30.03 Aligned_cols=35 Identities=17% Similarity=0.515 Sum_probs=27.7
Q ss_pred CCCCCCEEEEEEEEecCCC--CceEEEEEEEECCCCC
Q 003172 541 GVPVEGEIDIAVDFTAPEL--PGRYISYWRMSSPSGV 575 (842)
Q Consensus 541 ~V~PGEevdVSV~L~AP~~--pG~YiSyWRL~tpdG~ 575 (842)
++.+|+....++++..|.. +|+|.-.|+|.+.+|.
T Consensus 87 Pi~~G~~~~~~~~~~i~~~~p~~~~~i~~~l~d~~~~ 123 (134)
T PF02221_consen 87 PIKAGEYYTYTYTIPIPKIYPPGKYTIQWKLTDQDGE 123 (134)
T ss_dssp TBTTTEEEEEEEEEEESTTSSSEEEEEEEEEEETTTE
T ss_pred ccCCCcEEEEEEEEEcccceeeEEEEEEEEEEeCCCC
Confidence 4788998777777666644 6999999999998754
No 79
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=40.12 E-value=1.1e+02 Score=28.17 Aligned_cols=57 Identities=23% Similarity=0.395 Sum_probs=40.9
Q ss_pred EEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHH
Q 003172 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (842)
Q Consensus 7 IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~ 75 (842)
+||.-.+..+|+-+-.. ++..|+.|.+..|+++. ..+.| +-+|||=. .||+|....+
T Consensus 5 ~kv~~~~r~~k~Gv~A~-------sL~eL~~K~~~~l~~~~-~~~~l-vL~eDGT~---VddEeyF~tL 61 (78)
T PF02017_consen 5 FKVRNHDRSVKKGVAAS-------SLEELLEKACDKLQLPE-EPVRL-VLEEDGTE---VDDEEYFQTL 61 (78)
T ss_dssp EEEEETTSSCEEEEEES-------SHHHHHHHHHHHHT-SS-STCEE-EETTTTCB---ESSCHHHCCS
T ss_pred EEEecCCCCceEeEEcC-------CHHHHHHHHHHHhCCCC-cCcEE-EEeCCCcE---EccHHHHhhC
Confidence 67777777777777744 57889999999999975 56666 67899955 4666654333
No 80
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=38.89 E-value=1.2e+02 Score=26.75 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=48.4
Q ss_pred CcccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCc
Q 003172 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLK 80 (842)
Q Consensus 1 m~~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~ 80 (842)
|+=.|+||...| |.|.+.+.. +.+...|..+|++.+++++ ....|+|.. +|- .|.|+.-|.++=-+...
T Consensus 1 ~~~~i~Vk~~~G---~~~~~~v~~----~~TV~~lK~~I~~~~~i~~-~~qrL~~~~-~G~--~L~D~~tL~~~gi~~gs 69 (80)
T cd01792 1 MGWDLKVKMLGG---NEFLVSLRD----SMTVSELKQQIAQKIGVPA-FQQRLAHLD-SRE--VLQDGVPLVSQGLGPGS 69 (80)
T ss_pred CceEEEEEeCCC---CEEEEEcCC----CCcHHHHHHHHHHHhCCCH-HHEEEEecc-CCC--CCCCCCCHHHcCCCCCC
Confidence 664577887665 446777664 5789999999999999865 566775433 343 46666667764113344
Q ss_pred eEEEEE
Q 003172 81 FLRIDV 86 (842)
Q Consensus 81 ~LrI~V 86 (842)
.|.+.+
T Consensus 70 ~l~l~~ 75 (80)
T cd01792 70 TVLLVV 75 (80)
T ss_pred EEEEEE
Confidence 554443
No 81
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.80 E-value=34 Score=36.12 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhh
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDL 766 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdL 766 (842)
.+++..|++|||.- ++--++|+..+.|++.+..+|
T Consensus 163 ~~~v~~l~~mGf~~-~~~i~~L~~~~w~~~~a~~~~ 197 (200)
T KOG0418|consen 163 KKKVDSLIEMGFSE-LEAILVLSGSDWNLADATEQL 197 (200)
T ss_pred HHHHHHHHHhcccH-HHHHHHhhccccchhhhhHhh
Confidence 56678999999987 677789999999998776655
No 82
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=35.62 E-value=56 Score=30.00 Aligned_cols=30 Identities=30% Similarity=0.598 Sum_probs=22.0
Q ss_pred EEEEEEEecCCCCceEEEEEEEECCCCCcc
Q 003172 548 IDIAVDFTAPELPGRYISYWRMSSPSGVKF 577 (842)
Q Consensus 548 vdVSV~L~AP~~pG~YiSyWRL~tpdG~~F 577 (842)
-.+.+.+..+-.+|+|.-.||....||..-
T Consensus 59 ~~~~~~l~~~l~~G~YtV~wrvvs~DGH~~ 88 (97)
T PF04234_consen 59 KTLTVPLPPPLPPGTYTVSWRVVSADGHPV 88 (97)
T ss_dssp TEEEEEESS---SEEEEEEEEEEETTSCEE
T ss_pred eEEEEECCCCCCCceEEEEEEEEecCCCCc
Confidence 356677777788999999999999999653
No 83
>PF11679 DUF3275: Protein of unknown function (DUF3275); InterPro: IPR021693 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=33.88 E-value=3e+02 Score=29.83 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=19.1
Q ss_pred CCceEEEEEEEEC--CCCCccCCeEEEEEEEcCCCc
Q 003172 559 LPGRYISYWRMSS--PSGVKFGQRVWVLIQVDPSLK 592 (842)
Q Consensus 559 ~pG~YiSyWRL~t--pdG~~FGdrLWV~I~V~~~~~ 592 (842)
.+|+|.+-|-+.- +..-.-|.++|+.|+-.=+.+
T Consensus 42 ~EGkY~G~F~I~~I~p~sY~~~G~~~~EIRA~L~~m 77 (214)
T PF11679_consen 42 PEGKYDGEFVITEIFPSSYPAGGRMVVEIRARLDGM 77 (214)
T ss_pred ccCccccEEEEEEEeecceecCCcEEEEEEEEcCce
Confidence 3666654443321 222234788999998774443
No 84
>PF01724 DUF29: Domain of unknown function DUF29; InterPro: IPR002636 This entry is represented by Ralstonia phage RSS1, Orf11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family.; PDB: 3FCN_A.
Probab=33.38 E-value=24 Score=34.99 Aligned_cols=40 Identities=25% Similarity=0.552 Sum_probs=27.7
Q ss_pred hHHHHHhccCchhhhHhhhhccccchhHHHHHHhcccccccchhhhhhhh
Q 003172 748 NKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMVSSYVKTVMKCRNVL 797 (842)
Q Consensus 748 nkEiLr~n~YdLeqsvDdLcg~~EwdplleEl~Emgf~d~~~~~~~~~~~ 797 (842)
..+.||..+|+ .-.||.|.||++.||=+++.++...=.||
T Consensus 13 qa~lLr~~~~~----------~lD~enLiEEiE~mg~se~~~l~s~L~~l 52 (139)
T PF01724_consen 13 QAQLLREGDFD----------ALDWENLIEEIEDMGRSEKRALESRLRVL 52 (139)
T ss_dssp HHHHHHHSSST----------T--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCh----------HhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45677776653 23699999999999999987765443333
No 85
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=32.79 E-value=41 Score=38.44 Aligned_cols=43 Identities=30% Similarity=0.447 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCCcc-chhhHHHHHhccCchhhhHhhhhccccchhHHHHHHhccc
Q 003172 728 AVEQTLLRELEEMGFKQ-VDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMVS 784 (842)
Q Consensus 728 ~~e~~ll~eLe~MGFkq-~dlnkEiLr~n~YdLeqsvDdLcg~~EwdplleEl~Emgf 784 (842)
+.=.+||++....|++. ||.|-+||.+-+-.+. .|+.+||||+
T Consensus 49 ~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~--------------~l~~f~e~G~ 92 (360)
T COG3589 49 HRFKELLKEANKLGLRVIVDVNPSILKELNISLD--------------NLSRFQELGV 92 (360)
T ss_pred HHHHHHHHHHHhcCcEEEEEcCHHHHhhcCCChH--------------HHHHHHHhhh
Confidence 33468999999999998 9999999999876654 5778888854
No 86
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=32.19 E-value=73 Score=25.67 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=31.7
Q ss_pred HHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhccccchhHHHHHHhccccccc
Q 003172 733 LLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMVSSYVK 788 (842)
Q Consensus 733 ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~~EwdplleEl~Emgf~d~~ 788 (842)
+..=|.++|+ .-=.+.+++|+|+++ +|+.+++ +.|++||+....
T Consensus 7 V~~wL~~~~~---~~y~~~f~~~~i~g~----~L~~l~~-----~dL~~lgi~~~g 50 (63)
T cd00166 7 VAEWLESLGL---GQYADNFRENGIDGD----LLLLLTE-----EDLKELGITLPG 50 (63)
T ss_pred HHHHHHHcCh---HHHHHHHHHcCCCHH----HHhHCCH-----HHHHHcCCCCHH
Confidence 4467788898 445788999999765 4666654 568899997743
No 87
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=31.84 E-value=22 Score=40.03 Aligned_cols=30 Identities=23% Similarity=0.655 Sum_probs=23.4
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhh-hhhcC
Q 003172 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSI-CFAAM 413 (842)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLCs~-C~a~~ 413 (842)
+.|-.|++++ .||+|-.|. +-+|+- ||..|
T Consensus 8 ~~C~ic~vq~---~~YtCPRCn-~~YCsl~CYr~h 38 (383)
T KOG4317|consen 8 LACGICGVQK---REYTCPRCN-LLYCSLKCYRNH 38 (383)
T ss_pred eecccccccc---ccccCCCCC-ccceeeeeecCC
Confidence 5688888665 569999995 668886 99765
No 88
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=30.10 E-value=2.4e+02 Score=23.79 Aligned_cols=69 Identities=14% Similarity=0.322 Sum_probs=45.5
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH-HHccCceEE
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV-MRQRLKFLR 83 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a-~~q~l~~Lr 83 (842)
|.||...|.. +.+.+.. +.+...|.++|++.++++++ +..|.|. |- .|.|+..|.++ ++ .-..|.
T Consensus 3 i~v~~~~g~~---~~~~v~~----~~tv~~lK~~i~~~~g~~~~-~qrL~~~---g~--~L~d~~tl~~~~i~-~g~~i~ 68 (76)
T cd01806 3 IKVKTLTGKE---IEIDIEP----TDKVERIKERVEEKEGIPPQ-QQRLIYS---GK--QMNDDKTAADYKLE-GGSVLH 68 (76)
T ss_pred EEEEeCCCCE---EEEEECC----CCCHHHHHHHHhHhhCCChh-hEEEEEC---Ce--EccCCCCHHHcCCC-CCCEEE
Confidence 5666665543 4566554 57899999999999999766 5666785 43 35677777774 33 233455
Q ss_pred EEEE
Q 003172 84 IDVH 87 (842)
Q Consensus 84 I~V~ 87 (842)
+.+.
T Consensus 69 l~~~ 72 (76)
T cd01806 69 LVLA 72 (76)
T ss_pred EEEE
Confidence 5544
No 89
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=30.04 E-value=1.8e+02 Score=31.55 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=54.5
Q ss_pred CcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEEEEEEEECCCCCc
Q 003172 497 TPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVK 576 (842)
Q Consensus 497 t~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGEevdVSV~L~AP~~pG~YiSyWRL~tpdG~~ 576 (842)
..|.+. +++|.....||.|-.-+|.+|...+.. .+ +.+++||++.++.--- |..-..+.--.+ ....| .
T Consensus 167 ~a~l~a-~~~n~~~~~L~~G~~~v~~dg~~vG~~-----~l--~~~~~ge~~~l~~G~d-~~v~v~r~~~~~-~~~~g-~ 235 (317)
T PF13598_consen 167 NAYLVA-RFKNTSGLPLLPGPVSVYRDGTFVGES-----RL--PHTAPGEEFELSFGVD-PDVRVERKLLKK-EEERG-F 235 (317)
T ss_pred CeEEEE-EEECCCCCcccCCcEEEEECCEEEEee-----ec--CCCCCCCEEEEEcccC-CCEEEEEEecce-ecccc-c
Confidence 456555 699999999999999999998755531 12 3578899888764322 344444544444 33344 5
Q ss_pred cCC----eEEEEEEEcCCCcc
Q 003172 577 FGQ----RVWVLIQVDPSLKD 593 (842)
Q Consensus 577 FGd----rLWV~I~V~~~~~~ 593 (842)
||. +....|+|......
T Consensus 236 ~~~~~~~~~~~~itv~N~~~~ 256 (317)
T PF13598_consen 236 FGKSQRRTYEYTITVRNNKDE 256 (317)
T ss_pred ccccEEEEEEEEEEEECCCCC
Confidence 663 34566777755443
No 90
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=29.89 E-value=32 Score=31.58 Aligned_cols=62 Identities=19% Similarity=0.314 Sum_probs=33.2
Q ss_pred CCCcccCCCCcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEEEEE
Q 003172 488 LDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYW 567 (842)
Q Consensus 488 pDGT~V~PGt~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGEevdVSV~L~AP~~pG~YiSyW 567 (842)
|+--.+++|++.+ +.++|.|... -.++.-+ +. .. ..+.||++..+++ +|.++|+|.=|.
T Consensus 34 P~~i~v~~G~~v~--l~~~N~~~~~----h~~~i~~---~~------~~---~~l~~g~~~~~~f---~~~~~G~y~~~C 92 (104)
T PF13473_consen 34 PSTITVKAGQPVT--LTFTNNDSRP----HEFVIPD---LG------IS---KVLPPGETATVTF---TPLKPGEYEFYC 92 (104)
T ss_dssp S-EEEEETTCEEE--EEEEE-SSS-----EEEEEGG---GT------EE---EEE-TT-EEEEEE---EE-S-EEEEEB-
T ss_pred cCEEEEcCCCeEE--EEEEECCCCc----EEEEECC---Cc------eE---EEECCCCEEEEEE---cCCCCEEEEEEc
Confidence 4445788888777 4457888763 3343333 11 11 1368999976665 489999998766
Q ss_pred EEE
Q 003172 568 RMS 570 (842)
Q Consensus 568 RL~ 570 (842)
+|.
T Consensus 93 ~~~ 95 (104)
T PF13473_consen 93 TMH 95 (104)
T ss_dssp SSS
T ss_pred CCC
Confidence 543
No 91
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=29.65 E-value=66 Score=29.77 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCCccc--------hhhHHHHHhccCchhhhHhhhhccccchhHHHHHHhccc
Q 003172 728 AVEQTLLRELEEMGFKQV--------DLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMVS 784 (842)
Q Consensus 728 ~~e~~ll~eLe~MGFkq~--------dlnkEiLr~n~YdLeqsvDdLcg~~EwdplleEl~Emgf 784 (842)
...+.+.+.|+.|||..- +.-++.|+++ |. ..-+-+--=+.+.+||+|.||
T Consensus 42 ~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~-~~-----~~~v~vlG~~~l~~~l~~~G~ 100 (101)
T PF13344_consen 42 RSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEH-KG-----GKKVYVLGSDGLREELREAGF 100 (101)
T ss_dssp S-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHH-TT-----SSEEEEES-HHHHHHHHHTTE
T ss_pred CCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhc-CC-----CCEEEEEcCHHHHHHHHHcCC
Confidence 345788899999999842 3557788875 32 223333333589999999998
No 92
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=29.17 E-value=1.2e+02 Score=28.30 Aligned_cols=35 Identities=20% Similarity=0.576 Sum_probs=27.6
Q ss_pred CCCCCCEEEEEEEEecCCC--CceEEEEEEEECCCCC
Q 003172 541 GVPVEGEIDIAVDFTAPEL--PGRYISYWRMSSPSGV 575 (842)
Q Consensus 541 ~V~PGEevdVSV~L~AP~~--pG~YiSyWRL~tpdG~ 575 (842)
++.+|+.+.....|.-|.. +|+|...|+|.+.+|.
T Consensus 73 Pl~~G~~~~~~~~~~v~~~~P~~~~~v~~~l~d~~~~ 109 (118)
T smart00737 73 PIEKGETVNYTNSLTVPGIFPPGKYTVKWELTDEDGE 109 (118)
T ss_pred CCCCCeeEEEEEeeEccccCCCeEEEEEEEEEcCCCC
Confidence 3678999888777666653 7999999999997753
No 93
>PTZ00044 ubiquitin; Provisional
Probab=28.59 E-value=1.5e+02 Score=25.42 Aligned_cols=71 Identities=17% Similarity=0.254 Sum_probs=46.2
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCceEEE
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~LrI 84 (842)
|.||..-|. .+.+.+.. +.+...|+++|++..+++++ +..|-|. |-. |.|+..|.++--+.-..|.+
T Consensus 3 i~vk~~~G~---~~~l~v~~----~~tv~~lK~~i~~~~gi~~~-~q~L~~~---g~~--L~d~~~l~~~~i~~~~~i~l 69 (76)
T PTZ00044 3 ILIKTLTGK---KQSFNFEP----DNTVQQVKMALQEKEGIDVK-QIRLIYS---GKQ--MSDDLKLSDYKVVPGSTIHM 69 (76)
T ss_pred EEEEeCCCC---EEEEEECC----CCcHHHHHHHHHHHHCCCHH-HeEEEEC---CEE--ccCCCcHHHcCCCCCCEEEE
Confidence 455555444 34566664 57899999999999999765 5666684 443 66777777742233445666
Q ss_pred EEEe
Q 003172 85 DVHL 88 (842)
Q Consensus 85 ~V~l 88 (842)
.+.+
T Consensus 70 ~~~~ 73 (76)
T PTZ00044 70 VLQL 73 (76)
T ss_pred EEEc
Confidence 5554
No 94
>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The N-end rule-based degradation signal, which targets a protein for ubiquitin-dependent proteolysis, comprises a destabilising amino-terminal residue and a specific internal lysine residue. This entry describes a putative zinc finger in N-recognin, a recognition component of the N-end rule pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0004842 ubiquitin-protein ligase activity, 0008270 zinc ion binding; PDB: 3NY1_B 3NIS_F 3NIM_A 3NIK_A 3NII_A 3NIH_A 3NIL_D 3NIN_B 3NIJ_A 3NIT_A ....
Probab=28.11 E-value=35 Score=29.98 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=23.5
Q ss_pred cceecCCCCC---cchhhhhhhc-CCCCcceEEecCC
Q 003172 393 PRFKSKVKDD---YDLCSICFAA-MGSEADYIRIDRP 425 (842)
Q Consensus 393 ~RYKCsvC~D---yDLCs~C~a~-~~~~H~firI~~P 425 (842)
.-|+|..|.. .-+|..||+. -|..|.+..+...
T Consensus 12 ~~y~C~tC~~~~~~~iC~~CF~~~~H~gH~~~~~~~~ 48 (71)
T PF02207_consen 12 IFYRCLTCSLDESSGICEECFANSCHEGHRVVYYRSS 48 (71)
T ss_dssp EEEEETTTBSSTT-BBEHHHHCTSGGGGSSEEEEE--
T ss_pred EEEECccCCCCCCEEEchhhCCCCCcCCCcEEEEEeC
Confidence 4588888854 7789999877 4778998776555
No 95
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=27.59 E-value=30 Score=27.19 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=19.3
Q ss_pred ccCceecCCCCCCCccc---cceecCCCC
Q 003172 376 FHKGVRCDGCGVHPITG---PRFKSKVKD 401 (842)
Q Consensus 376 vH~GV~CDgC~~~PI~G---~RYKCsvC~ 401 (842)
++....|+.|+ ..|.| ..|+|..|.
T Consensus 8 ~~~~~~C~~C~-~~i~~~~~~~~~C~~C~ 35 (50)
T cd00029 8 FFKPTFCDVCR-KSIWGLFKQGLRCSWCK 35 (50)
T ss_pred CCCCCChhhcc-hhhhccccceeEcCCCC
Confidence 34567899999 57887 788888884
No 96
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=27.49 E-value=1.7e+02 Score=25.56 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=45.5
Q ss_pred EeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCceEEEEEEe
Q 003172 10 KYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHL 88 (842)
Q Consensus 10 ~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~LrI~V~l 88 (842)
+++| +.|.+.++. +.+...|+++|+....++++ ...|.|... .|.|+..|.++=-+.-..|.+.+.+
T Consensus 4 ~l~g--~~~~l~v~~----~~TV~~lK~~i~~~~gip~~-~q~L~~~G~-----~L~d~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 4 KLNG--QMLNFTLQL----SDPVSVLKVKIHEETGMPAG-KQKLQYEGI-----FIKDSNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred ccCC--eEEEEEECC----CCcHHHHHHHHHHHHCCCHH-HEEEEECCE-----EcCCCCcHHHcCCCCCCEEEEEEec
Confidence 3445 345566653 57899999999999999765 567778753 5788878877422445566665553
No 97
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=27.46 E-value=1e+02 Score=24.60 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=19.6
Q ss_pred CCccchhhHHHHHhccCchhhhHhhhh
Q 003172 741 GFKQVDLNKEILRMNEYDLEQSVDDLC 767 (842)
Q Consensus 741 GFkq~dlnkEiLr~n~YdLeqsvDdLc 767 (842)
|- .-+.=..+|++|++||+++|+.-.
T Consensus 12 g~-~~~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 12 GA-DEDVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp -S-SHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred Cc-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 54 446778899999999999998754
No 98
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=27.45 E-value=30 Score=29.00 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=24.0
Q ss_pred ccchhhHHHHHhccCchhhhHhhhhcc
Q 003172 743 KQVDLNKEILRMNEYDLEQSVDDLCGV 769 (842)
Q Consensus 743 kq~dlnkEiLr~n~YdLeqsvDdLcg~ 769 (842)
.|+|...|-||+-...|-++|-+||--
T Consensus 7 ~~~dydreqlrrelnsLR~~vhelctR 33 (48)
T PF10845_consen 7 AQHDYDREQLRRELNSLRRSVHELCTR 33 (48)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999999953
No 99
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=27.35 E-value=1e+02 Score=26.67 Aligned_cols=57 Identities=26% Similarity=0.450 Sum_probs=38.5
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChh-HHH
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDD-LCD 73 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~D-L~~ 73 (842)
|+||..-++. .+.+.+.. +.+...|+.+|++.++++++ +..|.|. |- .|.|+.. |.+
T Consensus 1 l~v~~~~~g~--~~~l~v~~----~~TV~~lK~~I~~~~gip~~-~q~Li~~---Gk--~L~D~~~~L~~ 58 (71)
T cd01796 1 ITVYTARSET--TFSLDVDP----DLELENFKALCEAESGIPAS-QQQLIYN---GR--ELVDNKRLLAL 58 (71)
T ss_pred CEEEECCCCC--EEEEEECC----cCCHHHHHHHHHHHhCCCHH-HeEEEEC---Ce--EccCCcccHHH
Confidence 4677762332 35777774 58999999999999999764 5677774 33 4555533 555
No 100
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=26.19 E-value=2.5e+02 Score=26.08 Aligned_cols=60 Identities=22% Similarity=0.271 Sum_probs=42.1
Q ss_pred EEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH
Q 003172 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR 76 (842)
Q Consensus 7 IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~ 76 (842)
+||+-.+..+|+-+-.+ ++..|+.|.+..|+++......-=|-+||| |..||+|....+-
T Consensus 5 fkV~~~~r~~k~GV~A~-------sL~eL~~K~~~~l~l~~~~~~~~lvL~eDG---T~VddEeyF~tLp 64 (80)
T cd06536 5 CVVCNVSRQKQHGVAAS-------SLEELRIKACESLGFDSSSAPITLVLAEDG---TIVEDEDYFLCLP 64 (80)
T ss_pred eEEecCCCCeeEeEEcC-------CHHHHHHHHHHHhCCCCCCCceEEEEecCC---cEEccHHHHhhCC
Confidence 57777777777777644 578899999999999854333335788999 5557777655443
No 101
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=26.12 E-value=82 Score=28.04 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=37.9
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCC-hhHHH
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDD-DDLCD 73 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd-~DL~~ 73 (842)
|.=|+++|++.. +.+. . +.+...|+.+|...++++++ ...| |.... |.+| .-|.+
T Consensus 5 ~~~~~~~~~t~~-l~v~--~----~~TV~~lK~kI~~~~gip~~-~QrL-~~G~~-----L~dD~~tL~~ 60 (75)
T cd01799 5 VEDAQSHTVTIW-LTVR--P----DMTVAQLKDKVFLDYGFPPA-VQRW-VIGQR-----LARDQETLYS 60 (75)
T ss_pred EeccccCCCeEE-EEEC--C----CCcHHHHHHHHHHHHCcCHH-HEEE-EcCCe-----eCCCcCCHHH
Confidence 445888888653 5554 2 58999999999999999877 5566 75432 5444 44655
No 102
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=26.09 E-value=45 Score=28.40 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=19.7
Q ss_pred ecCCCCCCCccc-------cceecCCCCCcchhhhhhhc-CCCCc
Q 003172 381 RCDGCGVHPITG-------PRFKSKVKDDYDLCSICFAA-MGSEA 417 (842)
Q Consensus 381 ~CDgC~~~PI~G-------~RYKCsvC~DyDLCs~C~a~-~~~~H 417 (842)
+|-+|...-..+ .||+|..|... +|-.|-.- |..-|
T Consensus 1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~~-FC~dCD~fiHE~LH 44 (51)
T PF07975_consen 1 YCFGCQKPFPDGPEKKADSSRYRCPKCKNH-FCIDCDVFIHETLH 44 (51)
T ss_dssp EETTTTEE-TTS-------EEE--TTTT---B-HHHHHTTTTTS-
T ss_pred CCccCCCCCCCcccccccCCeEECCCCCCc-cccCcChhhhcccc
Confidence 477887432222 69999999854 99999655 44444
No 103
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=25.09 E-value=2.3e+02 Score=28.66 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=33.3
Q ss_pred ccEEEEEEeCCe----eeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecC
Q 003172 3 STMVIKVKYGDT----LRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDE 58 (842)
Q Consensus 3 ~~i~IKv~~gd~----lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~De 58 (842)
+.+.|||++.+. -||+.|+- ++++..|-..||.+|....+.=+.+...+.
T Consensus 3 ~~y~lkV~L~~~~p~iwRri~Vp~------~~tl~~Lh~~Iq~afgw~~~HL~~F~~~~~ 56 (179)
T PF07929_consen 3 KVYQLKVSLKGSKPPIWRRIEVPA------DITLADLHEVIQAAFGWDDDHLYEFFIGGE 56 (179)
T ss_dssp EEEEEEEEETT-SS-EEEEEEEET------T-BHHHHHHHHHHHTT----S-EEEEEE-T
T ss_pred eEEEEEEEEcCCCCCeEEEEEECC------CCCHHHHHHHHHHHhCcCCCEeEEEEECCC
Confidence 457899998764 79999992 589999999999999887665555544433
No 104
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=24.82 E-value=55 Score=35.58 Aligned_cols=58 Identities=26% Similarity=0.303 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCccchhhHHHHHhccCchhhhHhhh---------------------------hccccchhHHHHHHhccc
Q 003172 732 TLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDL---------------------------CGVSEWDPILEELQEMVS 784 (842)
Q Consensus 732 ~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdL---------------------------cg~~EwdplleEl~Emgf 784 (842)
.-++-|+++||.+-|+-+ |++++-.=|.-++++. .+...|++.++-|+++||
T Consensus 177 ~~v~~L~~~G~~~~~i~~-~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~~~l~~~i~~L~~lG~ 255 (345)
T PF02536_consen 177 PKVEFLRSLGFSKEDIGK-LLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSEEKLKPKIEFLQSLGF 255 (345)
T ss_dssp HHHHHHHHCTT-GHHHHH-HHHHTTTGGGCGCHC---------------------------THHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHhhcccchhhhH-HhhcccceecccccccccccccccccccccccccccccccccccchHhHHHHHHHHHHhcC
Confidence 345778899999988766 5566655555555541 122358899999999999
Q ss_pred ccccch
Q 003172 785 SYVKTV 790 (842)
Q Consensus 785 ~d~~~~ 790 (842)
++.+..
T Consensus 256 s~~ei~ 261 (345)
T PF02536_consen 256 SEEEIA 261 (345)
T ss_dssp -HHHHH
T ss_pred cHHHHH
Confidence 988764
No 105
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=24.66 E-value=55 Score=26.47 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=18.4
Q ss_pred ccCceecCCCCCCCc---cccceecCCCC
Q 003172 376 FHKGVRCDGCGVHPI---TGPRFKSKVKD 401 (842)
Q Consensus 376 vH~GV~CDgC~~~PI---~G~RYKCsvC~ 401 (842)
+.....|+.|+ ..| ...-|+|..|.
T Consensus 8 ~~~~~~C~~C~-~~i~g~~~~g~~C~~C~ 35 (53)
T PF00130_consen 8 FSKPTYCDVCG-KFIWGLGKQGYRCSWCG 35 (53)
T ss_dssp SSSTEB-TTSS-SBECSSSSCEEEETTTT
T ss_pred CCCCCCCcccC-cccCCCCCCeEEECCCC
Confidence 45678999999 567 56678888885
No 106
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=24.64 E-value=1.6e+02 Score=28.22 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=29.0
Q ss_pred CCCCCCEEEEEEEEecCC--CCceEEEEEEEECCCCCccCCeEEE
Q 003172 541 GVPVEGEIDIAVDFTAPE--LPGRYISYWRMSSPSGVKFGQRVWV 583 (842)
Q Consensus 541 ~V~PGEevdVSV~L~AP~--~pG~YiSyWRL~tpdG~~FGdrLWV 583 (842)
.+++|+.. ++.++.-|. -+|+|.-.|+|.+.+| +.|.|
T Consensus 78 Pi~~G~~~-~~~~~~ip~~~P~g~y~v~~~l~d~~~----~~i~C 117 (122)
T cd00917 78 PIEPGDKF-LTKLVDLPGEIPPGKYTVSARAYTKDD----EEITC 117 (122)
T ss_pred CcCCCcEE-EEEEeeCCCCCCCceEEEEEEEECCCC----CEEEE
Confidence 37889887 776777776 3899999999999765 44554
No 107
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=24.39 E-value=1.4e+02 Score=29.83 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=30.9
Q ss_pred EEEEEEEEecCCCCceEEEEEEEECCCCCccCCeEEEE
Q 003172 547 EIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVL 584 (842)
Q Consensus 547 evdVSV~L~AP~~pG~YiSyWRL~tpdG~~FGdrLWV~ 584 (842)
-..+.|.+..|-++|.|+--||..+.||..-+-.+-..
T Consensus 86 ~~~l~v~l~~~L~aG~Y~v~WrvvS~DGH~v~G~~sFs 123 (127)
T COG2372 86 HTQLEVPLPQPLKAGVYTVDWRVVSSDGHVVKGSISFS 123 (127)
T ss_pred CcEEEecCcccCCCCcEEEEEEEEecCCcEeccEEEEE
Confidence 36688999999999999999999999998755444433
No 108
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.24 E-value=77 Score=36.52 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhh-cccc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLC-GVSE 771 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLc-g~~E 771 (842)
+.++.+|+|||| ..+--.-=||---||-++.|+-|+ |+-|
T Consensus 157 e~~I~~i~eMGf-~R~qV~~ALRAafNNPdRAVEYL~tGIP~ 197 (378)
T TIGR00601 157 ETTIEEIMEMGY-EREEVERALRAAFNNPDRAVEYLLTGIPE 197 (378)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHhCCHHHHHHHHHhCCCc
Confidence 678899999999 666666789999999999999999 7664
No 109
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=23.75 E-value=1.5e+02 Score=28.06 Aligned_cols=48 Identities=31% Similarity=0.382 Sum_probs=39.4
Q ss_pred chhHHHHHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhccccchhHHHHHHhcccc
Q 003172 725 DKDAVEQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMVSS 785 (842)
Q Consensus 725 ~~n~~e~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~~EwdplleEl~Emgf~ 785 (842)
+.+.++..+|.-|.+.| +|--|-|-|.-+++|++..+ +|++|+|||+=
T Consensus 4 ~~~~l~~~IL~hl~~~~---~Dy~k~ia~~l~~~~~~v~~----------~l~~Le~~GLl 51 (92)
T PF10007_consen 4 ILDPLDLKILQHLKKAG---PDYAKSIARRLKIPLEEVRE----------ALEKLEEMGLL 51 (92)
T ss_pred ccChhHHHHHHHHHHHC---CCcHHHHHHHHCCCHHHHHH----------HHHHHHHCCCe
Confidence 35667788999999988 67788888888999998764 67899999973
No 110
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=23.53 E-value=33 Score=35.93 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=31.6
Q ss_pred HHHHHHHcCCcc--chhhHHHHHhccCchhhhHhhhhccccchhHHHHHHhcccccc
Q 003172 733 LLRELEEMGFKQ--VDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMVSSYV 787 (842)
Q Consensus 733 ll~eLe~MGFkq--~dlnkEiLr~n~YdLeqsvDdLcg~~EwdplleEl~Emgf~d~ 787 (842)
-+||.-.+|-.. ++|-.+|.+-.-= |.---+.+|.-.|.+|+++||+=+
T Consensus 39 ~~REg~A~Glm~~f~~l~e~v~~l~id------d~~~~f~~~~~tl~~LE~~GFnV~ 89 (190)
T PF05266_consen 39 ELREGMAVGLMVTFANLAEKVKKLQID------DSRSSFESLMKTLSELEEHGFNVK 89 (190)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHcccC------CcHHHHHHHHHHHHHHHHcCCccH
Confidence 358888888655 5555444332111 112257789999999999999754
No 111
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=23.31 E-value=3e+02 Score=25.50 Aligned_cols=58 Identities=26% Similarity=0.402 Sum_probs=41.4
Q ss_pred EEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH
Q 003172 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR 76 (842)
Q Consensus 7 IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~ 76 (842)
+||+-.+..+|+-|-.+ ++..|+.|.++.|+++ +..+. =|-+||| |..||+|....+-
T Consensus 5 ~kV~~~~r~~k~GV~A~-------sL~eL~~K~~~~l~l~-~~~~~-lvL~eDG---TeVddEeYF~tLp 62 (78)
T cd01615 5 FKVCDSDRSRKKGVAAS-------SLEELLSKACEKLKLP-SAPVT-LVLEEDG---TEVDDEEYFQTLP 62 (78)
T ss_pred EEEecCCCCeeEEEEcC-------CHHHHHHHHHHHcCCC-CCCeE-EEEeCCC---cEEccHHHHhcCC
Confidence 57777777777777744 5778999999999997 44443 4788999 4556777555443
No 112
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.69 E-value=1.6e+02 Score=29.23 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=22.1
Q ss_pred CCCCCCCCEEEEEE-EEecCCCCceEE
Q 003172 539 ADGVPVEGEIDIAV-DFTAPELPGRYI 564 (842)
Q Consensus 539 v~~V~PGEevdVSV-~L~AP~~pG~Yi 564 (842)
-..|+||+++.|.+ .+.-|...|.|.
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~ 122 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQ 122 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEE
Confidence 34689999999999 688999999885
No 113
>PF12389 Peptidase_M73: Camelysin metallo-endopeptidase; InterPro: IPR022121 Camelysin is a novel surface metallopeptidase from Bacillus cereus []. Camelysin prefers cleavage sites in front of aliphatic and hydrophilic amino acid residues (-OH, -SO3H, amido group), and requires zinc for activity [, ].
Probab=22.66 E-value=3.4e+02 Score=29.05 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=58.6
Q ss_pred CCcccCCCCcEEEEEEEEcCCCCCCCCCcEEEE--ecCCCCCCCC------ceeeeccCCCCCCCCEEEEE-----EEEe
Q 003172 489 DGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVW--IGGDKFSDGV------SVEIEVPADGVPVEGEIDIA-----VDFT 555 (842)
Q Consensus 489 DGT~V~PGt~FtKtWrLrNsGt~~WP~Gt~Lvf--vgGD~m~~~~------sv~l~IPv~~V~PGEevdVS-----V~L~ 555 (842)
+-+-+.||..++|.+.|.|.|+..- ....|.. ..-|..+... ...+.+-. .......+.-. ..-.
T Consensus 57 ~v~nlkPGD~v~k~f~l~N~Gtldi-~~v~l~~~y~v~d~~gd~~~~df~k~i~v~fl~-n~dk~~~~~~~ttL~eL~~~ 134 (199)
T PF12389_consen 57 DVSNLKPGDTVEKEFTLKNSGTLDI-KDVLLKTDYTVTDAKGDNTAEDFGKHIKVQFLW-NWDKTSEPIYETTLAELKST 134 (199)
T ss_pred ecccCCCCCeEEEEEEEEeCCeeee-eeEEEEEEEEEEecCCCCchhhhhhcEEEEEEE-cCCCCccccccCCHHHHhcC
Confidence 4457999999999999999999864 2333322 1111111100 01111100 00111111111 1112
Q ss_pred cCCCCceEEEEEEEECCCCCccC--CeEEEEEEEcCCCcccccccccc--ccCC
Q 003172 556 APELPGRYISYWRMSSPSGVKFG--QRVWVLIQVDPSLKDSISDGFGG--LNLN 605 (842)
Q Consensus 556 AP~~pG~YiSyWRL~tpdG~~FG--drLWV~I~V~~~~~~s~~~~~~a--~nln 605 (842)
.|......+..|.+....|..=| +.|||.+..+...++ -++|++ |+|+
T Consensus 135 ~~~~~~~d~~~~~~~e~~gl~aG~~d~l~V~f~F~Dn~~d--qN~FQGD~l~L~ 186 (199)
T PF12389_consen 135 TPDIVANDIFAPAWGEKGGLAAGSSDDLWVKFEFVDNGED--QNQFQGDSLELT 186 (199)
T ss_pred CccccccchhcccccccCCCCCCCCcEEEEEEEEeeCCCc--cceecCcEEEEE
Confidence 34444455556666555676666 899999999876655 355655 5544
No 114
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=22.44 E-value=1.1e+02 Score=26.69 Aligned_cols=56 Identities=13% Similarity=0.139 Sum_probs=40.8
Q ss_pred EEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH
Q 003172 8 KVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 8 Kv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a 74 (842)
||+.-+ -+.|.+.+.. +-+...|+++|++..+++++ +..|-|.-. .|.|+..|.++
T Consensus 2 ~vk~~~-G~~~~l~v~~----~~TV~~lK~~I~~~~gi~~~-~q~Li~~G~-----~L~D~~~l~~~ 57 (70)
T cd01794 2 KVRLST-GKDVKLSVSS----KDTVGQLKKQLQAAEGVDPC-CQRWFFSGK-----LLTDKTRLQET 57 (70)
T ss_pred eEEcCC-CCEEEEEECC----cChHHHHHHHHHHHhCCCHH-HeEEEECCe-----ECCCCCCHHHc
Confidence 455443 2667888875 47899999999999999765 566667532 48888888774
No 115
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=22.13 E-value=2.8e+02 Score=24.52 Aligned_cols=68 Identities=24% Similarity=0.355 Sum_probs=45.2
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH-HHccCceEE
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV-MRQRLKFLR 83 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a-~~q~l~~Lr 83 (842)
|+||...| |+|.+.++. +-+...|+.+|++.++++++ ...|.|. |- .|.|+ .|.++ ++ .-..|.
T Consensus 4 I~Vk~~~G---~~~~l~v~~----~~TV~~LK~~I~~~~~~~~~-~qrL~~~---Gk--~L~d~-~L~~~gi~-~~~~i~ 68 (78)
T cd01804 4 LNIHSTTG---TRFDLSVPP----DETVEGLKKRISQRLKVPKE-RLALLHR---ET--RLSSG-KLQDLGLG-DGSKLT 68 (78)
T ss_pred EEEEECCC---CEEEEEECC----cCHHHHHHHHHHHHhCCChH-HEEEEEC---Cc--CCCCC-cHHHcCCC-CCCEEE
Confidence 56666555 447888774 47899999999999999764 6677787 43 35666 56664 32 233555
Q ss_pred EEEE
Q 003172 84 IDVH 87 (842)
Q Consensus 84 I~V~ 87 (842)
+.+.
T Consensus 69 l~~~ 72 (78)
T cd01804 69 LVPT 72 (78)
T ss_pred EEee
Confidence 4444
No 116
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=21.78 E-value=16 Score=31.29 Aligned_cols=33 Identities=33% Similarity=0.728 Sum_probs=24.0
Q ss_pred eecCCCCC-CCccc-------cceecCCC--CCcchhhhhhhc
Q 003172 380 VRCDGCGV-HPITG-------PRFKSKVK--DDYDLCSICFAA 412 (842)
Q Consensus 380 V~CDgC~~-~PI~G-------~RYKCsvC--~DyDLCs~C~a~ 412 (842)
..||-|.. .|+.| .||-|+.| +.|.+|..|-..
T Consensus 8 y~CDLCn~~~p~~~LRQCvlCGRWaC~sCW~deYY~CksC~Gi 50 (57)
T PF14445_consen 8 YSCDLCNSSHPISELRQCVLCGRWACNSCWQDEYYTCKSCNGI 50 (57)
T ss_pred HhHHhhcccCcHHHHHHHhhhchhhhhhhhhhhHhHHHhhhch
Confidence 57888864 24433 57999999 568899999754
No 117
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=21.43 E-value=50 Score=25.58 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=18.3
Q ss_pred cCceecCCCCCCCcccc--ceecCCCC
Q 003172 377 HKGVRCDGCGVHPITGP--RFKSKVKD 401 (842)
Q Consensus 377 H~GV~CDgC~~~PI~G~--RYKCsvC~ 401 (842)
+....|+.|+ ..|.|. .|+|..|.
T Consensus 9 ~~~~~C~~C~-~~i~~~~~~~~C~~C~ 34 (49)
T smart00109 9 KKPTKCCVCR-KSIWGSFQGLRCSWCK 34 (49)
T ss_pred CCCCCccccc-cccCcCCCCcCCCCCC
Confidence 5567899999 577774 68888883
No 118
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=21.11 E-value=29 Score=38.10 Aligned_cols=142 Identities=32% Similarity=0.412 Sum_probs=81.9
Q ss_pred EEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCceEEEEE
Q 003172 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDV 86 (842)
Q Consensus 7 IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~LrI~V 86 (842)
..+.|+...+| ....+-+..++...+....++...|++..+..+..+|.|+++..+.+....|+.+.-+.+....-+.|
T Consensus 10 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 88 (278)
T KOG4582|consen 10 EETEYGPVERR-RVPVKLNGQIDEEMAGSKEKVAALFNLSTDAALSRTYSDEDGVGMRVVRGNDLFDVTNQRLADEIGHV 88 (278)
T ss_pred chheecccccc-CCcccccceeeecCchhhhhhhhhcCcchhHHHhhhhhhccccceeEEecCCceEeecccCccccccc
Confidence 34555555555 55544445667777777778888898877777777999999999999999998873332221111111
Q ss_pred EecCCccCCccccCCCCCCCCCCCcccCCchhhhhHHHHHHhcCCchHHHHHHhhhhhhhhhhccCCchHHHHHHHHHhh
Q 003172 87 HLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDIDSKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKM 166 (842)
Q Consensus 87 ~l~~~~~~~~~~~~~~~s~p~~s~~~~~~l~~i~~~v~~~l~~v~ep~~~~l~Kls~~l~~~aa~s~p~~ael~d~~~kl 166 (842)
.....- . ..+.+++++.+......+......-.+ -.+ | +..+.++.-...|.+.++-+..+++
T Consensus 89 ~~~~~~-~-~~~~~s~~~~~~~~~~~~~~~~~s~~k------~~~--------~-~~~~~~~~~~~~~~~~~~H~~~~~~ 151 (278)
T KOG4582|consen 89 NAVRSF-N-SAAPSSGSSTPATVPVPWDKIPRSIIK------VLE--------K-YQKLASLVITLNPVVGEMHPNISKL 151 (278)
T ss_pred cceeee-c-cccccccccCccccccccchhhhhhhh------hhH--------H-HhhhhhhhhhcCCCccccCCCcccc
Confidence 111100 0 001144444443333322222211111 111 5 6677777777788888888877777
No 119
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=20.92 E-value=41 Score=38.23 Aligned_cols=30 Identities=17% Similarity=0.444 Sum_probs=25.4
Q ss_pred cCCCCCCCccccceecCCCCCcchhhhhhhc
Q 003172 382 CDGCGVHPITGPRFKSKVKDDYDLCSICFAA 412 (842)
Q Consensus 382 CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~ 412 (842)
|-+|+-....+.||+|..|.++ ||..|-.-
T Consensus 333 Cf~C~~~~~~~~~y~C~~Ck~~-FCldCDv~ 362 (378)
T KOG2807|consen 333 CFACQGELLSSGRYRCESCKNV-FCLDCDVF 362 (378)
T ss_pred eeeeccccCCCCcEEchhccce-eeccchHH
Confidence 9999656678899999999977 89999654
No 120
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=20.59 E-value=3.2e+02 Score=25.31 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=36.0
Q ss_pred EEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEE
Q 003172 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIV 63 (842)
Q Consensus 7 IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~V 63 (842)
+||+-.+..+|+-+-.+ ++..|+.|....|+++.. .+ -=|-+|||=.|
T Consensus 5 ~kV~~~~rs~k~GV~A~-------sL~eL~~K~~~~l~l~~~-~~-~l~L~eDGTeV 52 (77)
T cd06535 5 VKIRSLNSAQKYGVAAK-------NLKELLRKGCRLLQLPCA-GS-RLCLYEDGTEV 52 (77)
T ss_pred eEEecCCCCeeEeEEcC-------CHHHHHHHHHHHhCCCCC-Cc-EEEEecCCcEe
Confidence 57777777777777643 577899999999999643 33 35779999988
No 121
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=20.07 E-value=1.8e+02 Score=28.76 Aligned_cols=69 Identities=20% Similarity=0.166 Sum_probs=40.4
Q ss_pred ccCCCCcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCC--CCce---eeeccCCCCCCCCEEEEEEEEecCCCCceEEEE
Q 003172 492 MMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSD--GVSV---EIEVPADGVPVEGEIDIAVDFTAPELPGRYISY 566 (842)
Q Consensus 492 ~V~PGt~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~--~~sv---~l~IPv~~V~PGEevdVSV~L~AP~~pG~YiSy 566 (842)
.|.||+. ..|||-|.|... +.-..++|..|.. .+-. +..+..-.+.|||.++|-|++.. .+|.|.-.
T Consensus 63 ~v~~g~~--~rlRliNa~~~~----~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~--~~g~y~i~ 134 (159)
T PF00394_consen 63 KVKPGER--YRLRLINAGAST----SFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQ--PPGNYWIR 134 (159)
T ss_dssp EEETTTE--EEEEEEEESSS-----BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECS--CSSEEEEE
T ss_pred EEcCCcE--EEEEEEeccCCe----eEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCC--CCCeEEEE
Confidence 6788887 469999998863 2334456655421 1211 11111124789999999998854 48877544
Q ss_pred EE
Q 003172 567 WR 568 (842)
Q Consensus 567 WR 568 (842)
=+
T Consensus 135 ~~ 136 (159)
T PF00394_consen 135 AS 136 (159)
T ss_dssp EE
T ss_pred Ee
Confidence 33
Done!