Query 003172
Match_columns 842
No_of_seqs 275 out of 742
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 15:54:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 99.4 3E-13 1E-17 121.2 10.2 80 3-88 5-88 (89)
2 2kkc_A Sequestosome-1; P62, PB 99.4 1.1E-12 3.8E-17 120.2 11.0 85 4-88 5-101 (102)
3 1wmh_B Partitioning defective- 99.4 1.1E-12 3.8E-17 116.9 10.3 79 3-87 5-84 (86)
4 2e5r_A Dystrobrevin alpha; ZZ 99.4 2E-13 6.8E-18 115.1 5.2 53 371-424 4-62 (63)
5 2fc7_A ZZZ3 protein; structure 99.4 2.2E-13 7.6E-18 120.2 5.8 57 371-427 13-78 (82)
6 2dip_A Zinc finger SWIM domain 99.4 1.5E-13 5E-18 125.1 4.0 54 373-426 25-79 (98)
7 2ktr_A Sequestosome-1; autopha 99.4 2.1E-12 7.1E-17 120.9 10.9 86 1-88 18-116 (117)
8 2bkf_A Zinc-finger protein NBR 99.2 1.6E-10 5.4E-15 103.2 11.1 80 1-87 3-85 (87)
9 1tot_A CREB-binding protein; z 99.1 1.7E-11 5.8E-16 99.9 3.7 49 376-426 3-51 (52)
10 1wj6_A KIAA0049 protein, RSGI 99.1 2E-10 7E-15 104.8 8.3 80 1-87 11-93 (101)
11 1q1o_A Cell division control p 98.9 2.5E-09 8.5E-14 97.5 8.1 68 3-76 4-83 (98)
12 1pqs_A Cell division control p 98.4 2.6E-07 8.7E-12 81.0 6.2 48 29-76 11-62 (77)
13 2cp8_A NEXT to BRCA1 gene 1 pr 98.4 1.5E-07 5.2E-12 77.5 3.6 43 731-773 10-52 (54)
14 1oey_A P67-PHOX, neutrophil cy 97.9 4.8E-05 1.6E-09 67.6 8.8 74 5-87 6-81 (83)
15 1oey_J P40-PHOX, neutrophil cy 97.8 2.9E-05 9.9E-10 71.4 7.1 45 29-76 32-76 (107)
16 1ip9_A BEM1 protein; ubiquitin 96.8 0.0032 1.1E-07 56.3 7.7 71 3-84 11-82 (85)
17 2dah_A Ubiquilin-3; UBA domain 96.3 0.0029 9.8E-08 51.9 3.8 38 732-769 11-48 (54)
18 2jy5_A Ubiquilin-1; UBA, alter 96.2 0.004 1.4E-07 50.5 4.1 38 731-768 13-50 (52)
19 2knz_A Ubiquilin-4; cytoplasm, 96.1 0.0042 1.4E-07 50.5 3.6 38 731-768 12-49 (53)
20 2bwb_A Ubiquitin-like protein 96.0 0.0063 2.2E-07 48.3 4.1 38 731-768 8-45 (46)
21 1wr1_B Ubiquitin-like protein 95.6 0.0088 3E-07 49.8 3.8 38 731-768 18-55 (58)
22 1ify_A HHR23A, UV excision rep 95.6 0.0095 3.2E-07 47.7 3.8 37 731-768 9-45 (49)
23 1vej_A Riken cDNA 4931431F19; 95.5 0.011 3.7E-07 51.6 4.2 37 732-768 31-67 (74)
24 2cp8_A NEXT to BRCA1 gene 1 pr 95.2 0.0058 2E-07 50.5 1.4 21 770-790 6-27 (54)
25 1vg5_A RSGI RUH-014, rhomboid 95.0 0.017 5.8E-07 50.2 3.7 37 731-768 30-66 (73)
26 2npt_A Dual specificity mitoge 94.9 0.053 1.8E-06 49.4 7.0 60 6-73 18-78 (106)
27 2g3q_A Protein YBL047C; endocy 94.8 0.021 7.3E-07 44.0 3.6 37 731-768 5-41 (43)
28 4ae4_A Ubiquitin-associated pr 94.8 0.023 7.7E-07 53.3 4.3 59 729-788 7-92 (118)
29 2cwb_A Chimera of immunoglobul 94.5 0.022 7.5E-07 52.9 3.6 38 731-768 67-104 (108)
30 1wji_A Tudor domain containing 94.5 0.018 6.3E-07 48.5 2.7 39 729-768 8-46 (63)
31 1z96_A DNA-damage, UBA-domain 94.4 0.04 1.4E-06 41.3 4.1 35 731-766 5-39 (40)
32 2dak_A Ubiquitin carboxyl-term 94.3 0.031 1.1E-06 46.7 3.7 36 731-767 10-45 (63)
33 2dna_A Unnamed protein product 94.1 0.042 1.4E-06 47.2 4.1 38 731-768 20-57 (67)
34 2ekk_A UBA domain from E3 ubiq 93.2 0.062 2.1E-06 42.3 3.4 36 731-768 10-45 (47)
35 2cu1_A Mitogen-activated prote 93.0 1.1 3.7E-05 41.4 11.6 77 4-91 8-89 (103)
36 2lbc_A Ubiquitin carboxyl-term 92.9 0.1 3.5E-06 48.7 5.0 55 731-786 4-92 (126)
37 1wiv_A UBP14, ubiquitin-specif 92.4 0.1 3.5E-06 45.1 3.9 37 731-768 30-66 (73)
38 1veg_A NEDD8 ultimate buster-1 91.5 0.14 4.9E-06 45.6 3.9 37 731-768 30-66 (83)
39 4ae4_A Ubiquitin-associated pr 90.1 0.28 9.4E-06 46.0 4.7 37 730-767 76-112 (118)
40 3k9o_A Ubiquitin-conjugating e 89.9 0.17 5.8E-06 50.6 3.3 37 731-768 164-200 (201)
41 2dai_A Ubadc1, ubiquitin assoc 88.8 0.33 1.1E-05 43.0 3.9 38 730-768 29-66 (83)
42 3e46_A Ubiquitin-conjugating e 88.5 0.26 8.9E-06 51.5 3.6 37 731-768 216-252 (253)
43 2dkl_A Trinucleotide repeat co 88.5 0.36 1.2E-05 43.0 3.9 41 727-768 18-58 (85)
44 2dag_A Ubiquitin carboxyl-term 88.1 0.37 1.3E-05 41.7 3.7 38 730-768 9-47 (74)
45 2cpw_A CBL-interacting protein 87.7 0.25 8.6E-06 41.6 2.4 36 732-768 21-57 (64)
46 1whc_A RSGI RUH-027, UBA/UBX 3 87.7 0.34 1.2E-05 40.7 3.2 37 731-768 10-47 (64)
47 2jrh_A Mitogen-activated prote 87.2 7.5 0.00026 35.3 11.5 81 1-92 1-86 (94)
48 2lbc_A Ubiquitin carboxyl-term 85.7 0.58 2E-05 43.5 3.9 38 731-769 79-116 (126)
49 1t0y_A Tubulin folding cofacto 85.0 2.9 9.9E-05 38.5 8.2 69 1-74 3-73 (122)
50 1vek_A UBP14, ubiquitin-specif 81.6 1.2 4E-05 39.5 3.9 37 731-768 30-67 (84)
51 1v5n_A PDI-like hypothetical p 81.2 0.66 2.3E-05 41.2 2.2 31 380-412 48-78 (89)
52 2crn_A Ubash3A protein; compac 81.1 1.1 3.7E-05 37.8 3.3 35 733-768 12-47 (64)
53 1v6e_A Cytoskeleton-associated 80.3 2.7 9.1E-05 36.8 5.8 65 5-74 8-74 (95)
54 1wj7_A Hypothetical protein (R 80.2 1.5 5E-05 40.7 4.1 41 732-773 41-86 (104)
55 1wgn_A UBAP1, ubiquitin associ 79.7 1.4 4.8E-05 37.5 3.5 40 727-767 16-55 (63)
56 2ys4_A Hydrocephalus-inducing 79.7 2.2 7.7E-05 38.8 5.3 72 492-574 36-107 (122)
57 2cos_A Serine/threonine protei 79.7 1.3 4.6E-05 36.6 3.3 36 730-765 9-44 (54)
58 1wjn_A Tubulin-folding protein 77.5 5.6 0.00019 34.8 6.9 64 5-73 10-78 (97)
59 1wx7_A Ubiquilin 3; ubiquitin- 75.1 20 0.00068 31.7 9.9 76 4-91 17-92 (106)
60 1oqy_A HHR23A, UV excision rep 74.3 8.5 0.00029 42.2 8.7 36 731-767 169-204 (368)
61 2dhy_A CUE domain-containing p 74.2 2.7 9.2E-05 36.0 3.8 37 731-768 19-57 (67)
62 2dah_A Ubiquilin-3; UBA domain 73.3 1.2 4.2E-05 36.3 1.5 20 770-789 7-26 (54)
63 1p3q_Q VPS9P, vacuolar protein 72.5 2.4 8.1E-05 35.1 2.9 40 731-771 13-54 (54)
64 2npt_B Mitogen-activated prote 72.3 24 0.00083 32.4 9.7 74 4-88 20-98 (100)
65 1wgl_A TOLL-interacting protei 71.8 3.2 0.00011 34.6 3.6 38 731-769 10-49 (59)
66 2e6j_A Hydin protein; PAPD, st 71.0 7.6 0.00026 34.1 6.2 89 492-588 21-110 (112)
67 2jy5_A Ubiquilin-1; UBA, alter 70.5 1.6 5.5E-05 35.2 1.5 21 770-790 10-30 (52)
68 2bwb_A Ubiquitin-like protein 69.2 1.7 5.9E-05 34.3 1.4 20 771-790 6-25 (46)
69 2hj8_A Interferon-induced 17 k 69.2 18 0.00062 30.8 8.0 76 1-87 1-76 (88)
70 2c60_A Human mitogen-activated 69.1 35 0.0012 31.7 10.1 73 4-87 31-108 (111)
71 2kjr_A CG11242; UBL, ubiquitin 68.9 21 0.00071 31.7 8.5 65 4-74 15-82 (95)
72 2qsv_A Uncharacterized protein 68.6 8.4 0.00029 38.5 6.6 71 492-571 130-204 (220)
73 1q02_A Sequestosome 1; helical 68.3 4.9 0.00017 33.1 3.9 36 731-766 11-47 (52)
74 1wr1_B Ubiquitin-like protein 67.6 1.7 5.7E-05 36.2 1.1 21 770-790 15-35 (58)
75 1v5t_A 8430435I17RIK protein; 63.0 21 0.00072 30.8 7.2 60 4-74 7-69 (90)
76 2kj6_A Tubulin folding cofacto 61.0 26 0.00088 31.3 7.6 67 3-74 13-82 (97)
77 2knz_A Ubiquilin-4; cytoplasm, 59.8 2.7 9.1E-05 34.0 0.9 20 771-790 10-29 (53)
78 1tte_A Ubiquitin-conjugating e 59.3 3.5 0.00012 42.0 1.8 45 730-779 169-213 (215)
79 1v86_A DNA segment, CHR 7, way 58.1 23 0.0008 30.9 6.7 58 4-74 17-74 (95)
80 1vej_A Riken cDNA 4931431F19; 57.9 3.7 0.00013 35.7 1.5 21 770-790 27-47 (74)
81 1v5o_A 1700011N24RIK protein; 55.0 62 0.0021 28.4 9.0 60 5-74 8-71 (102)
82 3phx_B Ubiquitin-like protein 53.2 35 0.0012 28.0 6.7 75 1-86 1-75 (79)
83 1ef1_A Moesin; membrane, FERM 52.3 32 0.0011 35.2 7.7 64 4-73 1-64 (294)
84 1dv0_A DNA repair protein HHR2 52.1 3.7 0.00013 32.5 0.5 37 731-768 5-41 (47)
85 1yqb_A Ubiquilin 3; structural 51.8 56 0.0019 28.8 8.2 73 3-87 21-93 (100)
86 2kut_A Uncharacterized protein 51.3 32 0.0011 32.4 6.8 66 493-560 12-77 (122)
87 3mtn_B UBA80, ubcep1, ubiquiti 51.1 22 0.00074 29.3 5.1 77 3-90 2-78 (85)
88 1wh3_A 59 kDa 2'-5'-oligoadeny 49.8 87 0.003 26.0 8.8 73 4-87 7-79 (87)
89 4b6w_A Tubulin-specific chaper 49.4 36 0.0012 29.6 6.4 55 29-84 24-80 (86)
90 2i1j_A Moesin; FERM, coiled-co 49.0 30 0.001 39.8 7.5 67 1-73 1-67 (575)
91 3idu_A Uncharacterized protein 48.3 23 0.00078 33.3 5.3 78 484-574 22-100 (127)
92 1w8o_A Bacterial sialidase; 3D 47.2 61 0.0021 36.1 9.5 81 486-574 363-445 (601)
93 2xzz_A Protein-glutamine gamma 46.8 65 0.0022 29.1 7.9 71 485-564 10-80 (102)
94 2dna_A Unnamed protein product 46.1 7.1 0.00024 33.5 1.4 21 771-791 18-38 (67)
95 3n3k_B Ubiquitin; hydrolase, p 45.5 21 0.0007 29.5 4.1 75 4-90 3-78 (85)
96 2bwf_A Ubiquitin-like protein 45.1 27 0.00092 28.3 4.7 58 5-74 5-62 (77)
97 1we7_A SF3A1 protein; structur 44.7 1E+02 0.0035 27.6 8.9 75 4-88 25-108 (115)
98 1wx8_A Riken cDNA 4931431F19; 43.4 36 0.0012 29.3 5.5 59 4-74 17-75 (96)
99 3nis_A E3 ubiquitin-protein li 42.1 17 0.00058 32.2 3.2 49 374-424 3-55 (82)
100 1j8c_A Ubiquitin-like protein 40.7 52 0.0018 30.4 6.4 71 4-86 32-102 (125)
101 1wgg_A Ubiquitin carboxyl-term 40.4 59 0.002 28.5 6.5 57 4-73 7-64 (96)
102 1wy8_A NP95-like ring finger p 40.2 1.5E+02 0.0051 24.7 8.8 75 4-88 7-82 (89)
103 2daf_A FLJ35834 protein; hypot 39.9 54 0.0019 30.9 6.4 62 3-74 14-75 (118)
104 2uyz_B Small ubiquitin-related 39.6 95 0.0033 25.3 7.3 74 1-86 1-74 (79)
105 2l7r_A Ubiquitin-like protein 38.6 59 0.002 28.1 6.1 69 4-85 19-87 (93)
106 2kan_A Uncharacterized protein 38.4 1.4E+02 0.0048 25.9 8.6 71 5-87 16-87 (94)
107 2kd0_A LRR repeats and ubiquit 38.4 1.2E+02 0.0042 25.7 8.0 60 3-74 11-70 (85)
108 2cwb_A Chimera of immunoglobul 38.1 11 0.00037 35.0 1.4 20 770-789 64-83 (108)
109 3isy_A Bsupi, intracellular pr 37.1 41 0.0014 31.6 5.1 24 541-564 73-96 (120)
110 3bq7_A Diacylglycerol kinase d 36.6 42 0.0014 28.7 4.8 49 732-792 14-62 (81)
111 1wxv_A BAG-family molecular ch 36.6 80 0.0027 26.9 6.6 65 2-74 5-71 (92)
112 2vrw_B P95VAV, VAV1, proto-onc 36.2 19 0.00064 38.7 3.1 36 376-413 354-392 (406)
113 2cal_A Rusticyanin; iron respi 35.6 2.4E+02 0.0082 26.7 10.4 86 492-587 64-153 (154)
114 2pwq_A Ubiquitin conjugating e 35.5 7.8 0.00027 39.5 0.0 37 731-768 178-214 (216)
115 2i1s_A Hypothetical protein; m 34.5 1.4E+02 0.0048 29.2 8.8 44 4-53 8-55 (188)
116 2kk8_A Uncharacterized protein 34.0 92 0.0032 26.5 6.5 60 16-84 21-80 (84)
117 3k9o_B Ubiquitin, UBB+1; E2-25 33.6 60 0.0021 27.6 5.3 74 6-90 3-76 (96)
118 3qij_A Protein 4.1; cytoskelet 32.8 89 0.003 32.5 7.4 68 3-76 16-84 (296)
119 3o27_A Putative uncharacterize 31.7 29 0.001 30.0 2.9 31 35-65 29-59 (68)
120 4fp9_B Mterf domain-containing 31.3 48 0.0016 35.8 5.2 45 732-786 48-92 (335)
121 2klc_A Ubiquilin-1; ubiquitin- 30.9 1.1E+02 0.0039 26.8 6.8 59 4-74 25-83 (101)
122 4dbg_A Ranbp-type and C3HC4-ty 30.8 57 0.002 29.9 4.9 74 3-86 21-98 (105)
123 4b6d_A RAC GTPase-activating p 30.7 21 0.00072 29.6 1.8 25 376-401 16-42 (61)
124 2gim_A Plastocyanin; beta shee 30.6 1.9E+02 0.0066 24.6 8.1 26 541-571 66-91 (106)
125 1mby_A SAK, serine/threonine k 30.5 16 0.00054 33.0 1.1 39 52-90 43-82 (88)
126 2f3n_A SH3 and multiple ankyri 30.1 69 0.0023 27.0 5.0 46 733-790 10-55 (76)
127 3m62_B UV excision repair prot 29.8 33 0.0011 30.5 3.1 70 6-87 3-73 (106)
128 2dzm_A FAS-associated factor 1 29.4 1.2E+02 0.004 27.3 6.7 68 5-84 10-78 (100)
129 3ny3_A E3 ubiquitin-protein li 29.3 25 0.00086 30.5 2.1 33 392-424 15-51 (75)
130 3dbh_I NEDD8; cell cycle, acti 29.3 56 0.0019 27.1 4.3 60 4-74 12-71 (88)
131 1lyq_A PCOC copper resistance 28.9 45 0.0015 30.1 3.9 30 547-577 66-95 (104)
132 2fi0_A Conserved domain protei 28.8 26 0.0009 30.2 2.2 26 761-786 50-77 (81)
133 2d8v_A Zinc finger FYVE domain 28.7 26 0.0009 30.2 2.1 42 382-427 11-57 (67)
134 2c9r_A COPC, copper resistance 28.5 51 0.0018 29.6 4.1 30 547-577 64-93 (102)
135 2enz_A NPKC-theta, protein kin 27.8 37 0.0013 27.9 2.9 27 374-401 18-47 (65)
136 1wgd_A Homocysteine-responsive 27.8 1.7E+02 0.0058 24.9 7.2 72 5-86 8-84 (93)
137 2l0d_A Cell surface protein; s 27.4 1.2E+02 0.004 28.1 6.4 64 492-564 14-79 (114)
138 3a9j_A Ubiquitin; protein comp 26.4 1E+02 0.0035 24.4 5.3 49 16-74 11-59 (76)
139 3mva_O Transcription terminati 26.4 48 0.0016 35.1 4.1 48 732-789 21-68 (343)
140 2row_A RHO-associated protein 26.1 30 0.001 30.7 2.1 36 374-411 30-70 (84)
141 3kta_A Chromosome segregation 25.8 36 0.0012 31.5 2.7 51 731-781 124-181 (182)
142 2eam_A Putative 47 kDa protein 25.7 23 0.0008 30.2 1.3 44 735-789 17-62 (80)
143 1x1m_A Ubiquitin-like protein 25.3 1.6E+02 0.0056 26.0 6.8 75 5-84 13-96 (107)
144 2f1e_A Protein APAG; APAG prot 25.1 2.3E+02 0.008 26.6 8.1 64 497-577 46-111 (127)
145 3v6c_B Ubiquitin; structural g 25.0 93 0.0032 26.4 5.0 60 4-74 17-76 (91)
146 1yew_A Particulate methane mon 25.0 2.7E+02 0.0093 30.9 9.6 47 541-588 83-130 (382)
147 2dzi_A Ubiquitin-like protein 24.7 2E+02 0.007 23.1 6.9 60 4-74 7-66 (81)
148 2ke7_A Ankyrin repeat and ster 24.4 50 0.0017 29.7 3.2 47 735-792 27-75 (103)
149 1wju_A NEDD8 ultimate buster-1 24.1 2.3E+02 0.0079 25.6 7.6 75 5-90 16-93 (100)
150 2jvf_A De novo protein M7; tet 23.9 2.1E+02 0.0071 25.2 6.9 77 1-91 4-88 (96)
151 1oqy_A HHR23A, UV excision rep 23.6 33 0.0011 37.6 2.3 37 731-768 326-362 (368)
152 3ky9_A Proto-oncogene VAV; cal 23.2 37 0.0013 38.5 2.7 38 374-413 524-564 (587)
153 1h4r_A Merlin; FERM, neurofibr 23.2 1.3E+02 0.0045 31.0 6.7 64 3-73 21-84 (314)
154 4hcn_B Polyubiquitin, ubiquiti 22.7 1E+02 0.0036 26.6 4.9 60 4-74 22-81 (98)
155 4fp9_B Mterf domain-containing 22.5 83 0.0028 33.9 5.1 51 732-789 80-130 (335)
156 3mva_O Transcription terminati 22.3 47 0.0016 35.2 3.1 51 731-788 52-102 (343)
157 2qsf_X RAD23, UV excision repa 22.3 68 0.0023 31.9 4.0 38 730-768 130-167 (171)
158 2ffw_A Midline-1; B-BOX, ring 22.3 45 0.0015 28.6 2.4 34 379-413 30-64 (78)
159 2gle_A Neurabin-1; SAM domain, 22.2 49 0.0017 27.4 2.6 43 735-789 14-56 (74)
160 1ucv_A Ephrin type-A receptor 22.2 66 0.0023 27.5 3.5 44 735-790 12-56 (81)
161 1xvs_A Protein APAG; MCSG APC2 22.0 2.5E+02 0.0086 26.5 7.6 64 497-577 45-110 (126)
162 3ihp_A Ubiquitin carboxyl-term 21.9 60 0.0021 39.0 4.2 57 730-786 652-734 (854)
163 1we6_A Splicing factor, putati 21.8 1E+02 0.0034 27.4 4.7 74 4-86 27-102 (111)
164 4hci_A Cupredoxin 1; structura 21.7 1.1E+02 0.0038 26.3 4.9 54 490-564 29-82 (100)
165 2ojr_A Ubiquitin; lanthide-bin 21.5 1.7E+02 0.0057 26.0 6.1 60 4-74 35-94 (111)
166 1dj7_B Ferredoxin thioredoxin 21.3 31 0.0011 30.3 1.2 20 3-25 49-68 (75)
167 2eao_A Ephrin type-B receptor 21.2 57 0.002 29.0 3.0 43 735-789 27-70 (99)
168 1xq4_A Protein APAG; all beta 21.1 2.5E+02 0.0086 27.0 7.5 35 541-577 79-115 (139)
169 3m66_A Mterf3, mterf domain-co 21.1 80 0.0027 32.0 4.4 51 731-788 42-92 (270)
170 1qhq_A Protein (auracyanin); e 20.9 4.7E+02 0.016 23.6 9.4 38 541-584 99-137 (140)
171 2e8o_A SAM domain and HD domai 20.4 1.1E+02 0.0039 27.2 4.7 53 731-793 33-85 (103)
172 1ptq_A Protein kinase C delta 20.2 53 0.0018 25.2 2.2 26 375-401 7-35 (50)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=99.44 E-value=3e-13 Score=121.22 Aligned_cols=80 Identities=21% Similarity=0.376 Sum_probs=72.3
Q ss_pred ccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH----cc
Q 003172 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR----QR 78 (842)
Q Consensus 3 ~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~----q~ 78 (842)
..+.|||.|+|++|||.++. ++++..|.+||+.+|++..+..|+|+|+||+||.|||.+|.||..|++ .+
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~------~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~ 78 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEP------SISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNK 78 (89)
T ss_dssp SCEEEEEESSSCEEEEEECT------TCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTS
T ss_pred CeEEEEEEeCCeEEEEECCC------CCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccC
Confidence 45899999999999999983 589999999999999999999999999999999999999999999887 35
Q ss_pred CceEEEEEEe
Q 003172 79 LKFLRIDVHL 88 (842)
Q Consensus 79 l~~LrI~V~l 88 (842)
=..|+|-|..
T Consensus 79 ~~~l~ihvf~ 88 (89)
T 1vd2_A 79 DSELLIHVFP 88 (89)
T ss_dssp CCCEEEEEEE
T ss_pred CCCEEEEEcc
Confidence 5568888874
No 2
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=99.40 E-value=1.1e-12 Score=120.22 Aligned_cols=85 Identities=20% Similarity=0.331 Sum_probs=69.4
Q ss_pred cEEEEEEe------CCeeeeEEeeecCCCCc-----ccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHH
Q 003172 4 TMVIKVKY------GDTLRRFNARVDENEKL-----DLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLC 72 (842)
Q Consensus 4 ~i~IKv~~------gd~lRRf~~~l~~n~~~-----dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~ 72 (842)
.++|||.| ++++|||.++.+.+-.. -.++..|++||+++|.--...+|+|+|+|||||+|||.+|+||.
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsDeEL~ 84 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELT 84 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHH
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHH
Confidence 48999999 57899999996521001 15799999999999943346789999999999999999999999
Q ss_pred HHHH-ccCceEEEEEEe
Q 003172 73 DVMR-QRLKFLRIDVHL 88 (842)
Q Consensus 73 ~a~~-q~l~~LrI~V~l 88 (842)
.|++ .+...|||.|+-
T Consensus 85 ~Al~~~~~~~lRlyVke 101 (102)
T 2kkc_A 85 MAMSYVKDDIFRIYIKE 101 (102)
T ss_dssp HHHHHCCSSEEEEEEEE
T ss_pred HHHHhcCCCeEEEEEEc
Confidence 9998 455578998873
No 3
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=99.39 E-value=1.1e-12 Score=116.93 Aligned_cols=79 Identities=24% Similarity=0.392 Sum_probs=70.0
Q ss_pred ccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH-ccCce
Q 003172 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR-QRLKF 81 (842)
Q Consensus 3 ~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~-q~l~~ 81 (842)
+.++||.||+.+.|||.+.-+. ...+..|..+++++|+| .+.+|+|.|+|+|||+|+|.+|++|..|++ .+= -
T Consensus 5 ~~l~vKskf~aE~RRFs~d~~~----~~~fe~f~~lv~~lh~L-~~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~p-l 78 (86)
T 1wmh_B 5 SIVEVKSKFDAEFRRFALPRAS----VSGFQEFSRLLRAVHQI-PGLDVLLGYTDAHGDLLPLTNDDSLHRALASGPP-P 78 (86)
T ss_dssp CEEEEEEEETTEEEEEEEEGGG----CCCHHHHHHHHHHHTTC-TTCCCEEEEECTTSCEEECCSHHHHHHHTTSSSS-C
T ss_pred CEEEEEeecCCeeeEeEccCCC----CCCHHHHHHHHHHHcCC-CCCCEEEEEECCCCCEeeecCHHHHHHHHHhCCC-c
Confidence 5699999999999999997432 57999999999999999 688999999999999999999999999998 331 4
Q ss_pred EEEEEE
Q 003172 82 LRIDVH 87 (842)
Q Consensus 82 LrI~V~ 87 (842)
|||.|+
T Consensus 79 LRl~Iq 84 (86)
T 1wmh_B 79 LRLLVQ 84 (86)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 888887
No 4
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=2e-13 Score=115.06 Aligned_cols=53 Identities=25% Similarity=0.568 Sum_probs=46.7
Q ss_pred ccCCcccCceecCCCCCCCccccceecCCCCCcchhhhhhhc------CCCCcceEEecC
Q 003172 371 ALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADYIRIDR 424 (842)
Q Consensus 371 ~~~~vvH~GV~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~------~~~~H~firI~~ 424 (842)
+...+.|. +.||+|+..||.|.||||++|+|||||+.||.. |.++|+|.+|.+
T Consensus 4 ~~~~v~H~-~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~t 62 (63)
T 2e5r_A 4 GSSGVFHP-VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTS 62 (63)
T ss_dssp CSSSCCSC-SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEECC
T ss_pred CcCCceeC-CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEeC
Confidence 44577888 999999988999999999999999999999987 457899988754
No 5
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.39 E-value=2.2e-13 Score=120.20 Aligned_cols=57 Identities=26% Similarity=0.507 Sum_probs=51.1
Q ss_pred ccCCcccCceecCCCCCCCccccceecCCCCC---cchhhhhhhc------CCCCcceEEecCCCC
Q 003172 371 ALMGMFHKGVRCDGCGVHPITGPRFKSKVKDD---YDLCSICFAA------MGSEADYIRIDRPVH 427 (842)
Q Consensus 371 ~~~~vvH~GV~CDgC~~~PI~G~RYKCsvC~D---yDLCs~C~a~------~~~~H~firI~~Pv~ 427 (842)
....++|.++.||+|+..||+|.||||++|+| ||||+.||.. |.++|.|..|.+|..
T Consensus 13 ~~~~~~H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~~ 78 (82)
T 2fc7_A 13 ESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSSG 78 (82)
T ss_dssp STTSCEESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCCC
T ss_pred cccCCeeCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCCC
Confidence 34578999999999998899999999999999 9999999974 568999999998864
No 6
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.38 E-value=1.5e-13 Score=125.05 Aligned_cols=54 Identities=24% Similarity=0.482 Sum_probs=49.3
Q ss_pred CCcccCceecCCCCCCCccccceecCCCCCcchhhhhhhc-CCCCcceEEecCCC
Q 003172 373 MGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA-MGSEADYIRIDRPV 426 (842)
Q Consensus 373 ~~vvH~GV~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~-~~~~H~firI~~Pv 426 (842)
..++|.|+.||+|+..||.|.||||++|+|||||+.||.. .|+.|.|++|.+|.
T Consensus 25 ~~~~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~H~~H~f~~i~~~~ 79 (98)
T 2dip_A 25 RLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCHLSHTFTFREKRN 79 (98)
T ss_dssp CCSSCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTSGGGSCEEECCSSS
T ss_pred cccccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCCCCCCCeeEecCCC
Confidence 4689999999999988999999999999999999999988 34899999998874
No 7
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=99.37 E-value=2.1e-12 Score=120.93 Aligned_cols=86 Identities=22% Similarity=0.349 Sum_probs=69.4
Q ss_pred CcccEEEEEEeC------CeeeeEEeeecCCCCc-----ccCHHHHHHHHHHHh-CCCCCCccEEEEecCCCCEEEEcCC
Q 003172 1 MESTMVIKVKYG------DTLRRFNARVDENEKL-----DLDIDGLRAKIKSLF-NFPHDSDLTLTYVDEDGDIVTLVDD 68 (842)
Q Consensus 1 m~~~i~IKv~~g------d~lRRf~~~l~~n~~~-----dl~~~~L~~ki~~lf-~l~~d~~~~lrY~DeDGD~VTL~dd 68 (842)
|.+ ++|||.|. +.+|||.++.+.+-.+ -.++..|++||+++| +| ...+|+|+|+|||||+|||.+|
T Consensus 18 ~~~-l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L-~~~~f~l~YkDEdGDlItISsD 95 (117)
T 2ktr_A 18 MGS-LTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL-RPGGFQAHYRAERGDLVAFSSD 95 (117)
T ss_dssp --C-EEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-CSSCEEEEEECTTCCEEEECSH
T ss_pred ccc-EEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc-CCCcEEEEEECCCCCEEEecCH
Confidence 444 99999996 7899999996521111 258999999999999 55 4668999999999999999999
Q ss_pred hhHHHHHH-ccCceEEEEEEe
Q 003172 69 DDLCDVMR-QRLKFLRIDVHL 88 (842)
Q Consensus 69 ~DL~~a~~-q~l~~LrI~V~l 88 (842)
++|..|++ .+...|||.|+-
T Consensus 96 eEL~~Al~~~~~~~lRlyVke 116 (117)
T 2ktr_A 96 EELTMAMSYVKDDIFRIYIKE 116 (117)
T ss_dssp HHHHHHHHHCCSSEEEEEEEE
T ss_pred HHHHHHHHhcCCCeEEEEEEe
Confidence 99999998 355578888873
No 8
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=99.16 E-value=1.6e-10 Score=103.18 Aligned_cols=80 Identities=19% Similarity=0.436 Sum_probs=71.1
Q ss_pred CcccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH---c
Q 003172 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR---Q 77 (842)
Q Consensus 1 m~~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~---q 77 (842)
|+..+++||.|.|+.|||-+.-.+ +.++..|..|+...|+|. +|.|||.|||||.|+|.++.++.+|++ .
T Consensus 3 ~~~~v~lkV~f~ge~~rf~vs~~~----~~tweel~~mvk~~f~L~---~~~ikY~DEenD~v~i~Sq~E~eEAlkva~k 75 (87)
T 2bkf_A 3 MEPQVTLNVTFKNEIQSFLVSDPE----NTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKMAVK 75 (87)
T ss_dssp CCCCEEEEEEETTEEEEEEESCGG----GCCHHHHHHHHHHHHTCS---SEEEEEECTTSCEEEECSHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEcCCeeEEEeccCC----CCCHHHHHHHHHHHcCCC---ceEEEEEcCCCCEEEEecHHHHHHHHHHhcc
Confidence 888999999999999999995322 699999999999999995 889999999999999999999999877 3
Q ss_pred cCceEEEEEE
Q 003172 78 RLKFLRIDVH 87 (842)
Q Consensus 78 ~l~~LrI~V~ 87 (842)
+-+.|++.|.
T Consensus 76 ~~n~L~m~v~ 85 (87)
T 2bkf_A 76 QGNQLQMQVH 85 (87)
T ss_dssp TTTEEEEEEE
T ss_pred CCCEEEEEEe
Confidence 4677888885
No 9
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=99.14 E-value=1.7e-11 Score=99.90 Aligned_cols=49 Identities=22% Similarity=0.515 Sum_probs=43.4
Q ss_pred ccCceecCCCCCCCccccceecCCCCCcchhhhhhhcCCCCcceEEecCCC
Q 003172 376 FHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPV 426 (842)
Q Consensus 376 vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~~~~~H~firI~~Pv 426 (842)
-|.++.||+|... | |.||||++|+|||||..||......|+|.+|..|+
T Consensus 3 ~~~~~~Cd~C~~~-i-g~R~~C~~C~dyDLC~~C~~~~~H~H~m~~~~~~l 51 (52)
T 1tot_A 3 DRFVYTCNECKHH-V-ETRWHCTVCEDYDLCINCYNTKSHTHKMVKWGLGL 51 (52)
T ss_dssp CSSCEEETTTTEE-E-SSEEEESSSSSCEECHHHHHHHCCCSSEEEECSSC
T ss_pred CcCEEECCCCCCC-C-cceEEcCCCCCchhHHHHHhCCCCCCceEEecCCC
Confidence 4678999999954 5 99999999999999999999955589999998886
No 10
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=99.08 E-value=2e-10 Score=104.76 Aligned_cols=80 Identities=19% Similarity=0.436 Sum_probs=70.8
Q ss_pred CcccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH---c
Q 003172 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR---Q 77 (842)
Q Consensus 1 m~~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~---q 77 (842)
|+-.+++||.|.|+.+||-+.-.+ +.++..|..|+...|+|. +|.|||.|||||.|+|.++.++.+|++ .
T Consensus 11 m~~~v~lkV~f~ge~~rF~Vs~~~----~~tweel~~mvk~~f~L~---~~~IkY~DEenD~V~i~Sq~E~eEAlkva~k 83 (101)
T 1wj6_A 11 MEPQVTLNVTFKNEIQSFLVSDPE----NTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKMAVK 83 (101)
T ss_dssp SCSCEEEEEEETTEEEEEEESCTT----TSCHHHHHHHHHHHHCCS---SBCCEEECTTSCEECCCSHHHHHHHHHHHHH
T ss_pred cCccEEEEEEEcCCeeEEEecCCC----CCCHHHHHHHHHHHcCCC---ceEEEEecCCCCEEEEecHHHHHHHHHHhcc
Confidence 888999999999999999996332 699999999999999995 889999999999999999999999877 2
Q ss_pred cCceEEEEEE
Q 003172 78 RLKFLRIDVH 87 (842)
Q Consensus 78 ~l~~LrI~V~ 87 (842)
+-+.|+++|.
T Consensus 84 ~~n~L~m~V~ 93 (101)
T 1wj6_A 84 QGNQLQMQVH 93 (101)
T ss_dssp HTSEEEEECC
T ss_pred CCCEEEEEEe
Confidence 3677888775
No 11
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=98.90 E-value=2.5e-09 Score=97.52 Aligned_cols=68 Identities=24% Similarity=0.418 Sum_probs=58.3
Q ss_pred ccEEEEEEeC--------CeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCc----cEEEEecCCCCEEEEcCChh
Q 003172 3 STMVIKVKYG--------DTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSD----LTLTYVDEDGDIVTLVDDDD 70 (842)
Q Consensus 3 ~~i~IKv~~g--------d~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~----~~lrY~DeDGD~VTL~dd~D 70 (842)
+.|-|||.|+ +++|-+-++ . +.++..|.+||++-|++..+.+ +.|||+|||||+|||.+|+|
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~---~---~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddD 77 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVE---K---VWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDED 77 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEEC---T---TCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEec---C---CCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHH
Confidence 3488999999 667777666 2 5999999999999998865666 68999999999999999999
Q ss_pred HHHHHH
Q 003172 71 LCDVMR 76 (842)
Q Consensus 71 L~~a~~ 76 (842)
|.-|++
T Consensus 78 l~~A~e 83 (98)
T 1q1o_A 78 WNVAKE 83 (98)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998876
No 12
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=98.43 E-value=2.6e-07 Score=81.00 Aligned_cols=48 Identities=31% Similarity=0.399 Sum_probs=42.9
Q ss_pred ccCHHHHHHHHHHHhCCCCC----CccEEEEecCCCCEEEEcCChhHHHHHH
Q 003172 29 DLDIDGLRAKIKSLFNFPHD----SDLTLTYVDEDGDIVTLVDDDDLCDVMR 76 (842)
Q Consensus 29 dl~~~~L~~ki~~lf~l~~d----~~~~lrY~DeDGD~VTL~dd~DL~~a~~ 76 (842)
++++..|.+||++-|++.++ ..+.|||+|||||+|||.+|+||..|++
T Consensus 11 ~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~ 62 (77)
T 1pqs_A 11 VWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKE 62 (77)
T ss_dssp CCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHH
Confidence 68899999999999996432 5689999999999999999999999887
No 13
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.39 E-value=1.5e-07 Score=77.53 Aligned_cols=43 Identities=33% Similarity=0.465 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhccccch
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWD 773 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~~Ewd 773 (842)
.+.|++|.||||...++|+++||+++|||+++|++|+...|=|
T Consensus 10 a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 10 AALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGPS 52 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCCC
Confidence 5689999999999999999999999999999999999876644
No 14
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=97.86 E-value=4.8e-05 Score=67.63 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=58.9
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecC-CCCEEEEcCChhHHHHHHc-cCceE
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDE-DGDIVTLVDDDDLCDVMRQ-RLKFL 82 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~De-DGD~VTL~dd~DL~~a~~q-~l~~L 82 (842)
++|||.|.++ - -|.+.- ++++..|++||++-|+++ .....|.|+|+ .|.+| |..|+||.+|.++ +-.+|
T Consensus 6 ~~VKV~~~~t-v--airvp~----~~~y~~L~~~l~~kL~l~-~~~~~LsYk~~~s~~~v-i~~d~dl~~aw~~~~n~~L 76 (83)
T 1oey_A 6 YTLKVHYKYT-V--VMKTQP----GLPYSQVRDMVSKKLELR-LEHTKLSYRPRDSNELV-PLSEDSMKDAWGQVKNYCL 76 (83)
T ss_dssp EEEEEESSSE-E--EEEECT----TCCHHHHHHHHHHHTTCC-GGGCCEEECCTTCSSCE-ECCTTTHHHHHTTCBTTEE
T ss_pred EEEEEEEEEE-E--EEECCC----CCCHHHHHHHHHHHhCCC-cceeEEEeeCCCCCCee-ccChHHHHHHHHhccCCcE
Confidence 7999999963 3 444442 699999999999999997 56799999995 56677 9999999999984 34467
Q ss_pred EEEEE
Q 003172 83 RIDVH 87 (842)
Q Consensus 83 rI~V~ 87 (842)
++.++
T Consensus 77 tL~C~ 81 (83)
T 1oey_A 77 TLWCE 81 (83)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77654
No 15
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=97.83 E-value=2.9e-05 Score=71.37 Aligned_cols=45 Identities=29% Similarity=0.528 Sum_probs=41.1
Q ss_pred ccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH
Q 003172 29 DLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR 76 (842)
Q Consensus 29 dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~ 76 (842)
.-.+..|..+||+.|+ ..++.|+|.|.|||+|+|-||+|+..+++
T Consensus 32 ~P~ykdLl~lmr~~F~---~~DIaLNYrD~eGDLIrilddeDv~lmi~ 76 (107)
T 1oey_J 32 TPLLKDLLELTRREFQ---REDIALNYRDAEGDLVRLLSDEDVALMVR 76 (107)
T ss_dssp CCCHHHHHHHHHHHHC---CSSEEEEEECTTSCEEECCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc---ccceeeeeecCCCCEEEEcchHHHHHHHH
Confidence 3467788999999997 67999999999999999999999999888
No 16
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=96.80 E-value=0.0032 Score=56.33 Aligned_cols=71 Identities=23% Similarity=0.361 Sum_probs=56.1
Q ss_pred ccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecC-CCCEEEEcCChhHHHHHHccCce
Q 003172 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDE-DGDIVTLVDDDDLCDVMRQRLKF 81 (842)
Q Consensus 3 ~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~De-DGD~VTL~dd~DL~~a~~q~l~~ 81 (842)
+++-||+-|.||+ |-+.|.. |+++..|++||+.=+++ ++...+.|+|| .|+ -|.+|+||..|||.+. +
T Consensus 11 ~~~KVK~yy~DDI--iAIrvP~----di~~~~L~dKi~~RLk~--~~~~l~~ykde~~g~--~i~sD~dl~~aiqrn~-K 79 (85)
T 1ip9_A 11 KTTKIKFYYKDDI--FALMLKG----DTTYKELRSKIAPRIDT--DNFKLQTKLFDGSGE--EIKTDSQVSNIIQAKL-K 79 (85)
T ss_dssp CCEEEEECBTTCC--EEEEECS----CCCHHHHHHHHHHHHTS--SCEEEEECCSSSCCS--CCCSHHHHHHHHHTTC-C
T ss_pred CceEEEEEecCcE--EEEECCC----CCCHHHHHHHHHHHhcc--cceEEEEecCCCCCC--cccCHHHHHHHHHhcC-e
Confidence 4578999999997 4555553 69999999999999998 44555588887 777 8999999999998543 5
Q ss_pred EEE
Q 003172 82 LRI 84 (842)
Q Consensus 82 LrI 84 (842)
|.|
T Consensus 80 L~l 82 (85)
T 1ip9_A 80 ISV 82 (85)
T ss_dssp EEE
T ss_pred eEE
Confidence 544
No 17
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.29 E-value=0.0029 Score=51.92 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhcc
Q 003172 732 TLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGV 769 (842)
Q Consensus 732 ~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~ 769 (842)
.-|..|.+|||.-.+.|.+.|++.+.|++++|+.|++-
T Consensus 11 ~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 44699999999999999999999999999999999853
No 18
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.20 E-value=0.004 Score=50.49 Aligned_cols=38 Identities=29% Similarity=0.444 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
+.-|+.|.+|||...+.|.+.|++.+.|+|++|+.|.+
T Consensus 13 ~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 13 QQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34579999999999999999999999999999999864
No 19
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.05 E-value=0.0042 Score=50.50 Aligned_cols=38 Identities=29% Similarity=0.452 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
+.-|..|.+|||.-.+.|...|++.+.|++++|+.|..
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45679999999999999999999999999999999974
No 20
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=95.95 E-value=0.0063 Score=48.33 Aligned_cols=38 Identities=32% Similarity=0.477 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
+.-|..|.+|||.-.+-|...|++.+.|++++|+.|.+
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 34569999999988999999999999999999999874
No 21
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.59 E-value=0.0088 Score=49.82 Aligned_cols=38 Identities=32% Similarity=0.477 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
+.-|+.|.+|||.-.+.|...|++.+.|++++|+.|..
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34569999999999999999999999999999999974
No 22
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.58 E-value=0.0095 Score=47.68 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
+..++.|.+||| ..+....-||+.++|+|++++.|..
T Consensus 9 ~~~i~~L~~MGF-~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSMGY-ERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 455799999999 7788999999999999999999874
No 23
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.51 E-value=0.011 Score=51.63 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 732 TLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 732 ~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
.-|+.|.+|||.-.+.|.+.||+.+.|++++|+.|..
T Consensus 31 ~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 31 QELEELKALGFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3469999999999999999999999999999999985
No 24
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.19 E-value=0.0058 Score=50.55 Aligned_cols=21 Identities=19% Similarity=0.026 Sum_probs=18.2
Q ss_pred ccchh-HHHHHHhcccccccch
Q 003172 770 SEWDP-ILEELQEMVSSYVKTV 790 (842)
Q Consensus 770 ~Ewdp-lleEl~Emgf~d~~~~ 790 (842)
-||++ .|++|+||||+|.+.-
T Consensus 6 ee~~a~~L~~L~eMGF~D~~~N 27 (54)
T 2cp8_A 6 SGQTAALMAHLFEMGFCDRQLN 27 (54)
T ss_dssp CTTHHHHHHHHHHHTCCCHHHH
T ss_pred HHhhHHHHHHHHHcCCCcHHHH
Confidence 48988 9999999999998753
No 25
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.96 E-value=0.017 Score=50.22 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
+..|+.|.+|||- .+.....||+.+||+|++++.|..
T Consensus 30 ee~I~~L~eMGF~-r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 30 EEQIQKLVAMGFD-RTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHHTTTCC-HHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4456999999995 578888999999999999999974
No 26
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=94.94 E-value=0.053 Score=49.42 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=43.1
Q ss_pred EEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccE-EEEecCCCCEEEEcCChhHHH
Q 003172 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLT-LTYVDEDGDIVTLVDDDDLCD 73 (842)
Q Consensus 6 ~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~-lrY~DeDGD~VTL~dd~DL~~ 73 (842)
-||+.-|+++ --.+. -...|+++.|...|.+++ |++..+ +-|-|||||-||+-+|++|..
T Consensus 18 RIk~p~~g~v---DwaV~--~~~~L~FrDvL~~I~~vm---P~aT~TAFeYEDE~gDRITVRSDeE~kA 78 (106)
T 2npt_A 18 RIKIPNSGAV---DWTVH--SGPQLLFRDVLDVIGQVL---PEATTTAFEYEDEDGDRITVRSDEEMKA 78 (106)
T ss_dssp EEEETTTEEE---EEEEC--C--CCCHHHHHHHHHHHS---TTSCCSEEEEECTTSCEEEECSHHHHHH
T ss_pred EEECCCCCcc---ccccC--CcccccHHHHHHHHHHhC---ccceeeeeeeccccCCeeEEcchHHHHH
Confidence 3455444544 23333 246899999999999999 455554 499999999999999999764
No 27
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=94.81 E-value=0.021 Score=44.00 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
+..++.|.+|||-. +..+.-||+.++|++++++-|..
T Consensus 5 e~~i~~L~~MGF~~-~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSGMGFTE-EEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTTTSCH-HHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHhCcCHHHHHHHHHc
Confidence 35579999999975 77889999999999999998853
No 28
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=94.77 E-value=0.023 Score=53.33 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhcccc-------------------------ch--hHHHHHHh
Q 003172 729 VEQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSE-------------------------WD--PILEELQE 781 (842)
Q Consensus 729 ~e~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~~E-------------------------wd--plleEl~E 781 (842)
-|+.+|..|.+|||-...--|=+.+-.+ |.++.++-|....+ |. ..+..|.|
T Consensus 7 ~e~~~v~~l~~MGFp~~~~~kAl~~~g~-~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~e 85 (118)
T 4ae4_A 7 SERQCVETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKE 85 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHCc-CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHH
Confidence 4899999999999999888887777766 99999988875421 11 13788899
Q ss_pred ccccccc
Q 003172 782 MVSSYVK 788 (842)
Q Consensus 782 mgf~d~~ 788 (842)
|||....
T Consensus 86 MGF~~~~ 92 (118)
T 4ae4_A 86 MGFELKD 92 (118)
T ss_dssp TTCCHHH
T ss_pred cCCCHHH
Confidence 9998764
No 29
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=94.54 E-value=0.022 Score=52.91 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
+.-|..|.+|||.-.+.|.+.|+..+.|++++|+.|.+
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34569999999998999999999999999999999984
No 30
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.49 E-value=0.018 Score=48.47 Aligned_cols=39 Identities=28% Similarity=0.511 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 729 VEQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 729 ~e~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
+++..|+.|.+|||-. +....-||+.++|+|++++-|..
T Consensus 8 ~~~~~I~~L~~MGF~~-~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 8 VDEKALKHITEMGFSK-EASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp SCHHHHHHHHTTTCCH-HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCH-HHHHHHHHHhCCCHHHHHHHHHH
Confidence 4467789999999955 56788999999999999998864
No 31
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=94.39 E-value=0.04 Score=41.31 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhh
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDL 766 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdL 766 (842)
+..++.|.+|||.. +..+..|+..++|++++++.|
T Consensus 5 ~~~i~~L~~mGf~~-~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSMGFDP-LEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHcCCCHHHHHHHH
Confidence 44679999999975 777999999999999999876
No 32
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.28 E-value=0.031 Score=46.69 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhh
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLC 767 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLc 767 (842)
+..|+.|.+|||-. +..+.-||+.++|+|++++-|.
T Consensus 10 ~~~v~~L~~MGF~~-~~a~~AL~~t~~nve~A~e~L~ 45 (63)
T 2dak_A 10 EDCVTTIVSMGFSR-DQALKALRATNNSLERAVDWIF 45 (63)
T ss_dssp HHHHHHHHHHTCCH-HHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 56789999999974 8888999999999999998775
No 33
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.08 E-value=0.042 Score=47.19 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
+.-|..|.+|||.-.+.|.+.||..+-|++.+||-|-.
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45678999999999999999999999999999998863
No 34
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.17 E-value=0.062 Score=42.27 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
+..|+.|.+|||-. +..+.-||..+ |+|++++-|..
T Consensus 10 ~~~v~~L~~MGF~~-~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMDMGFTR-EHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHHCCH-HHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHcC-CHHHHHHHHHc
Confidence 56689999999998 88889999997 99999998853
No 35
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=93.03 E-value=1.1 Score=41.41 Aligned_cols=77 Identities=22% Similarity=0.351 Sum_probs=62.5
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH-----cc
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR-----QR 78 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~-----q~ 78 (842)
++-||.-|+|..|-+.++ | -+.+..|+.|+.++|+- .+.|+|+|- -=+|-|...+||-.|+. .-
T Consensus 8 dvRiKfE~~GEkRIi~f~-R-----Pv~f~eL~~Kv~~~fGq----~ldL~y~n~-EllIpl~sQeDLDkaIellDrss~ 76 (103)
T 2cu1_A 8 DVRVKFEHRGEKRILQFP-R-----PVKLEDLRSKAKIAFGQ----SMDLHYTNN-ELVIPLTTQDDLDKAVELLDRSIH 76 (103)
T ss_dssp EEEEEEEETTEEEEEEEE-S-----SCCHHHHHHHHHHHHSS----CEEEEECSS-SSCEECCSHHHHHHHHHHHHHCSS
T ss_pred cEEEEEEecCeEEEEecc-C-----CccHHHHHHHHHHHhCC----eeeEEEecc-eEEEeccCHHHHHHHHHHHccCCc
Confidence 588999999998888888 3 48999999999999975 688999955 46788999999988766 24
Q ss_pred CceEEEEEEecCC
Q 003172 79 LKFLRIDVHLNND 91 (842)
Q Consensus 79 l~~LrI~V~l~~~ 91 (842)
.+.|||.+....+
T Consensus 77 ~kSLrIlL~~~~~ 89 (103)
T 2cu1_A 77 MKSLKILLVINGS 89 (103)
T ss_dssp CCSEEEEEEECCC
T ss_pred ccceEEEEecCCC
Confidence 5678887775543
No 36
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=92.93 E-value=0.1 Score=48.66 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhc-cCchhhhHhhhhc------c----------------c--------cc---hhHH
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMN-EYDLEQSVDDLCG------V----------------S--------EW---DPIL 776 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n-~YdLeqsvDdLcg------~----------------~--------Ew---dpll 776 (842)
+.+|.+|.+|||.... -++-||.. +-|+|++++-|.- + + +| +..+
T Consensus 4 ~~~l~~L~~MGF~~~~-a~~AL~~t~n~~~e~A~~wL~~~~~d~di~epl~~~~~~s~~~~~~~~l~~~~~~~~~~e~~v 82 (126)
T 2lbc_A 4 ESSVMQLAEMGFPLEA-CRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIV 82 (126)
T ss_dssp THHHHHHHTTSSCCHH-HHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCTTCCSSCCSSSSSCCCCSTTSSCCCCCCHHHH
T ss_pred HHHHHHHHHcCCCHHH-HHHHHHHcCCCCHHHHHHHHHHhcccccccccccccccccccccchhhhcccccccCcCHHHH
Confidence 4578999999999954 45566666 5599999988863 1 0 45 3478
Q ss_pred HHHHhccccc
Q 003172 777 EELQEMVSSY 786 (842)
Q Consensus 777 eEl~Emgf~d 786 (842)
..|.+|||.-
T Consensus 83 ~~L~~MGF~~ 92 (126)
T 2lbc_A 83 AIITSMGFQR 92 (126)
T ss_dssp HHHHHHTSCH
T ss_pred HHHHHcCCCH
Confidence 9999999984
No 37
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=92.35 E-value=0.1 Score=45.09 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
+..|+.|.+|||. .+..+.-||.++.|+|++|+-|..
T Consensus 30 ~~~v~~L~~MGF~-~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 30 QSSVDTLLSFGFA-EDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHHTCC-HHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5567999999995 677889999999999999999875
No 38
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.47 E-value=0.14 Score=45.55 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
+..++.|.+||| ..+.-...||+.+.|+|++++.|..
T Consensus 30 ee~I~~Lv~MGF-~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 30 QESINQLVYMGF-DTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHHHHSC-CHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 344699999999 4577788999999999999999985
No 39
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=90.15 E-value=0.28 Score=46.01 Aligned_cols=37 Identities=30% Similarity=0.530 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhh
Q 003172 730 EQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLC 767 (842)
Q Consensus 730 e~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLc 767 (842)
-..++..|.+|||. .++-|+-||+++-|.+++||.|-
T Consensus 76 ~~~~v~~L~eMGF~-~~~a~~AL~~~~nd~erAlewL~ 112 (118)
T 4ae4_A 76 FLQLMSKFKEMGFE-LKDIKEVLLLHNNDQDNALEDLM 112 (118)
T ss_dssp HHHHHHHHHHTTCC-HHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHcCCC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 34579999999995 57889999999999999999884
No 40
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=89.86 E-value=0.17 Score=50.62 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
+..+++|++|||...+-- +.|+++++|++++++.|++
T Consensus 164 eekV~~l~~MGf~~~~a~-~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 164 TKKIENLCAMGFDRNAVI-VALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHTTTCCHHHHH-HHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHH-HHHHHcCCCHHHHHHHHhc
Confidence 556799999999986554 4999999999999999976
No 41
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.78 E-value=0.33 Score=43.01 Aligned_cols=38 Identities=29% Similarity=0.527 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 730 EQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 730 e~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
.+..|+.|.+|||-. +..+.-||..+.|+|++++-|..
T Consensus 29 ~e~~i~~L~~MGF~~-~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 29 DEAALRQLTEMGFPE-NRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp CHHHHHHHHHHTCCH-HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCH-HHHHHHHHHhCCCHHHHHHHHHH
Confidence 356789999999998 78888999999999999998874
No 42
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=88.50 E-value=0.26 Score=51.48 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
++.+++|.+|||...+-.. +|++++||++++++.|++
T Consensus 216 ~~~v~~l~~mgf~~~~~~~-al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 216 TKKIENLCAAGFDRNAVIV-ALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHTTCCHHHHHH-HHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHH-HHHHcCCCHHHHHHHHhc
Confidence 5677999999999866655 999999999999999986
No 43
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=88.49 E-value=0.36 Score=42.98 Aligned_cols=41 Identities=27% Similarity=0.520 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 727 DAVEQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 727 n~~e~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
..+-+..+++|.+|||-. +.-.+.|+.++.|+|++++-|..
T Consensus 18 ~~~n~~~I~qL~~MGF~~-~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 18 AWIMSRLIKQLTDMGFPR-EPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHHHHHHHTCCH-HHHHHHHHHTTSCHHHHHHHHHT
T ss_pred cccCHHHHHHHHHcCCCH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 345466789999999966 66777889999999999999875
No 44
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.12 E-value=0.37 Score=41.68 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCccchhhHHHHHhccC-chhhhHhhhhc
Q 003172 730 EQTLLRELEEMGFKQVDLNKEILRMNEY-DLEQSVDDLCG 768 (842)
Q Consensus 730 e~~ll~eLe~MGFkq~dlnkEiLr~n~Y-dLeqsvDdLcg 768 (842)
.+..|++|.+|||-. +..+.-||..+. |+|++++-|..
T Consensus 9 ~e~~v~~L~~MGF~~-~~a~~AL~~t~n~~ve~A~ewL~~ 47 (74)
T 2dag_A 9 DESVIIQLVEMGFPM-DACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp CHHHHHHHHHHSCCH-HHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCH-HHHHHHHHHhCCCCHHHHHHHHHh
Confidence 356789999999985 888888998885 89999998864
No 45
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=87.73 E-value=0.25 Score=41.57 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCccchhhHHHHHhccC-chhhhHhhhhc
Q 003172 732 TLLRELEEMGFKQVDLNKEILRMNEY-DLEQSVDDLCG 768 (842)
Q Consensus 732 ~ll~eLe~MGFkq~dlnkEiLr~n~Y-dLeqsvDdLcg 768 (842)
..|..|.+|||-. +..+.-||..+. |+|++++-|..
T Consensus 21 ~~i~~L~~MGF~~-~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 21 SALDVLLSMGFPR-ARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CHHHHHHHHTCCH-HHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3568999999976 888889999997 99999999874
No 46
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=87.70 E-value=0.34 Score=40.71 Aligned_cols=37 Identities=30% Similarity=0.397 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhc-cCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMN-EYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n-~YdLeqsvDdLcg 768 (842)
+..|..|.+|||-. +..+.-||.. +.|+|++++-|..
T Consensus 10 ~~~v~~L~~MGF~~-~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 10 LTALESLIEMGFPR-GRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp CCHHHHHHTTTCCH-HHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHhcCCCHHHHHHHHHh
Confidence 34578999999997 7778889988 7999999998863
No 47
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=87.19 E-value=7.5 Score=35.28 Aligned_cols=81 Identities=22% Similarity=0.324 Sum_probs=65.2
Q ss_pred CcccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH----
Q 003172 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR---- 76 (842)
Q Consensus 1 m~~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~---- 76 (842)
|-.++-||.-|.|.-|-+.++ | .+.+..|++|+.++|+- .+.|-|+ +.-=.|-|....||-.|+.
T Consensus 1 ~q~dvRIKfE~~gEKRIi~f~-R-----Pvkf~dl~qkv~~afGq----~ldl~y~-nnEL~iPL~~Q~DLDkAvelLDr 69 (94)
T 2jrh_A 1 MQSDVRIKFEHNGERRIIAFS-R-----PVKYEDVEHKVTTVFGQ----PLDLHYM-NNELSILLKNQDDLDKAIDILDR 69 (94)
T ss_dssp -CCCEEEEEEETTEEEEEEEC-S-----SCCHHHHHHHHHHHHCS----SEEEEEE-CSSCEEECCSHHHHHHHHHHHHH
T ss_pred CCCceEEEEEecCceEEEecC-C-----CccHHHHHHHHHHHhCC----eeeeEEe-cceeEEeccCHHHHHHHHHHhcc
Confidence 667899999999988877777 2 48999999999999965 5778898 5567888999999988765
Q ss_pred -ccCceEEEEEEecCCc
Q 003172 77 -QRLKFLRIDVHLNNDK 92 (842)
Q Consensus 77 -q~l~~LrI~V~l~~~~ 92 (842)
.-++-|||.+....+.
T Consensus 70 s~~mkSLRIlL~~~~~~ 86 (94)
T 2jrh_A 70 SSSMKSLRILLLSQDRN 86 (94)
T ss_dssp STTTTEEEEEEEECSSC
T ss_pred CccccceEEEEEcCCcc
Confidence 3567799998876644
No 48
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=85.74 E-value=0.58 Score=43.54 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhcc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGV 769 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~ 769 (842)
+..++.|.+|||- .+..+..||..++|++++++-|..-
T Consensus 79 e~~v~~L~~MGF~-~~~a~~AL~~~~~~~e~A~e~L~~~ 116 (126)
T 2lbc_A 79 EEIVAIITSMGFQ-RNQAIQALRATNNNLERALDWIFSH 116 (126)
T ss_dssp HHHHHHHHHHTSC-HHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 5567999999998 6899999999999999999999753
No 49
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=84.97 E-value=2.9 Score=38.50 Aligned_cols=69 Identities=14% Similarity=0.258 Sum_probs=52.0
Q ss_pred CcccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEE-EE-cCChhHHHH
Q 003172 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIV-TL-VDDDDLCDV 74 (842)
Q Consensus 1 m~~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~V-TL-~dd~DL~~a 74 (842)
|...|.|+|+.....+.+.+.+.. +.+...|..||+..++++++ ...|.|.+.+|-.+ .| .|+.-|.++
T Consensus 3 m~~~v~l~V~~~~~~~~~e~~v~~----~~TV~~lK~ki~~~~Gip~~-~qrL~~~g~~~~~~~~l~~D~~tL~~y 73 (122)
T 1t0y_A 3 MTEVYDLEITTNATDFPMEKKYPA----GMSLNDLKKKLELVVGTTVD-SMRIQLFDGDDQLKGELTDGAKSLKDL 73 (122)
T ss_dssp CCCEEEEEEEESSCCSCEEEEEET----TSBHHHHHHHHHHHHCCCTT-TEEEEEECSSSSEEEECCCCSSBTTTT
T ss_pred CCCEEEEEEEECCCCccEEEEeCC----CCcHHHHHHHHHHHhCCCHH-HeEEEEecCCCccccccCCCcCCHHHC
Confidence 788899999987654456666663 58999999999999999865 77888888778766 34 454456664
No 50
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=81.62 E-value=1.2 Score=39.51 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhc-cCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMN-EYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n-~YdLeqsvDdLcg 768 (842)
+..|+.|.+|||-. +..+..||+. +.|+|++++-|..
T Consensus 30 e~~v~~L~~MGF~~-~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 30 EEIVAQLVSMGFSQ-LHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp HHHHHHHHHHTCCH-HHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHHcCCCHHHHHHHHHh
Confidence 56679999999998 6677777777 4799999998864
No 51
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=81.23 E-value=0.66 Score=41.22 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=26.9
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhc
Q 003172 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA 412 (842)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~ 412 (842)
..||.|+. .+.|.+|+|..| ||+|-..|...
T Consensus 48 ~~C~~C~~-~~~~~~Y~C~~C-~f~lH~~Ca~~ 78 (89)
T 1v5n_A 48 YTCDKCEE-EGTIWSYHCDEC-DFDLHAKCALN 78 (89)
T ss_dssp CCCTTTSC-CCCSCEEECTTT-CCCCCHHHHHC
T ss_pred eEeCCCCC-cCCCcEEEcCCC-CCeEcHHhcCC
Confidence 58999994 589999999999 69998889765
No 52
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=81.13 E-value=1.1 Score=37.80 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=28.4
Q ss_pred HHHHHHHcCCccchhhHHHHHhccC-chhhhHhhhhc
Q 003172 733 LLRELEEMGFKQVDLNKEILRMNEY-DLEQSVDDLCG 768 (842)
Q Consensus 733 ll~eLe~MGFkq~dlnkEiLr~n~Y-dLeqsvDdLcg 768 (842)
.|++|.+|||-. +--+.-|+..+. |+|++++-|..
T Consensus 12 ~v~~L~~MGF~~-~~a~~AL~~t~n~~~e~A~~wL~~ 47 (64)
T 2crn_A 12 LLEPLLAMGFPV-HTALKALAATGRKTAEEALAWLHD 47 (64)
T ss_dssp SHHHHHHTSCCH-HHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCH-HHHHHHHHHhCCCCHHHHHHHHHh
Confidence 568999999998 666677777655 99999998874
No 53
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.35 E-value=2.7 Score=36.84 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=48.5
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEE-E-cCChhHHHH
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVT-L-VDDDDLCDV 74 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VT-L-~dd~DL~~a 74 (842)
|.|+|++....+.+.+.+.. +.+...|..||+...+++++ ...|.|.+.+|-.+. | .|+.-|.++
T Consensus 8 v~l~I~~~~~~~~~~~~v~~----~~TV~~lK~ki~~~~gip~~-~qrL~~~~~~g~~~~~l~~D~~tL~~y 74 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSR----SLTIAEFKCKLELVVGSPAS-CMELELYGADDKFYSKLDQEDALLGSY 74 (95)
T ss_dssp EEEEEEETTSSSCEEEEECT----TSBHHHHHHHHHHHTCSCTT-TCBCEEECSSSCEEEECCCSSSBTTSS
T ss_pred EEEEEEECCCCeeEEEEcCc----cCHHHHHHHHHHHHHCCCHH-HeEEEEeCCCCccccccCCCcCCHhHC
Confidence 88888887655567777774 58999999999999999865 667788887777653 3 455556553
No 54
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=80.15 E-value=1.5 Score=40.66 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=34.7
Q ss_pred HHHHHHHHc-CCccchhhHHHHHhccCchhhhHhhhhc-c---ccch
Q 003172 732 TLLRELEEM-GFKQVDLNKEILRMNEYDLEQSVDDLCG-V---SEWD 773 (842)
Q Consensus 732 ~ll~eLe~M-GFkq~dlnkEiLr~n~YdLeqsvDdLcg-~---~Ewd 773 (842)
..++.|.|| ||.. +.-.+.|.++++||++++..|++ . .+|.
T Consensus 41 ekVk~L~EmtG~se-eeAr~AL~~~ngDl~~AI~~Lleg~~~~~~W~ 86 (104)
T 1wj7_A 41 EKVKQLIDITGKNQ-DECVIALHDCNGDVNRAINVLLEGNPDTHSWE 86 (104)
T ss_dssp HHHHHHHHHTCCCH-HHHHHHHHHHTSCHHHHHHHHHTCSSSCSSCS
T ss_pred HHHHHHHHhhCCCH-HHHHHHHHHcCCCHHHHHHHHHhCCCcCCcee
Confidence 345999999 9985 77789999999999999999994 3 3675
No 55
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=79.73 E-value=1.4 Score=37.48 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhh
Q 003172 727 DAVEQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLC 767 (842)
Q Consensus 727 n~~e~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLc 767 (842)
...|+.++..|.+|||.... -+--||+.+-|+||.+|=|-
T Consensus 16 s~se~e~V~~LvsMGFs~~q-A~kALKat~~NvErAaDWLF 55 (63)
T 1wgn_A 16 SPSERQCVETVVNMGYSYEC-VLRAMKKKGENIEQILDYLF 55 (63)
T ss_dssp CHHHHHHHHHHHHHHCCHHH-HHHHHHHHCSCHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCCHHH-HHHHHHHcCCCHHHHHHHHH
Confidence 45678889999999997644 44568899999999999763
No 56
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.72 E-value=2.2 Score=38.76 Aligned_cols=72 Identities=22% Similarity=0.250 Sum_probs=50.4
Q ss_pred ccCCCCcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEEEEEEEEC
Q 003172 492 MMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSS 571 (842)
Q Consensus 492 ~V~PGt~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGEevdVSV~L~AP~~pG~YiSyWRL~t 571 (842)
.+.-|+.=+|+-.|||+|.. ...+.|..-..|. +.-....++||+++.|.|.|. |...|.|...-.+..
T Consensus 36 ~~~v~~~~~~~~~l~N~g~~----~~~f~~~~~~~F~------i~P~~g~L~pg~~~~i~V~F~-P~~~g~~~~~l~v~~ 104 (122)
T 2ys4_A 36 TCPVKYSTQKILLVRNIGNK----NAVFHIKTCRPFS------IEPAIGTLNVGESMQLEVEFE-PQSVGDHSGRLIVCY 104 (122)
T ss_dssp SEESSSCEEEEEEEECCSSS----CEEEEEECCTTEE------EESSEEEECTTCEEEEEEEEC-CSSSBCCCCBCEEEE
T ss_pred CeecCCeEEEEEEEEECCCC----CEEEEEecCCCeE------EECCcCEECCCCEEEEEEEEE-cCCCccEEEEEEEEE
Confidence 45667788999999999985 3444444322222 111112478999999999999 899999988777766
Q ss_pred CCC
Q 003172 572 PSG 574 (842)
Q Consensus 572 pdG 574 (842)
.+|
T Consensus 105 ~~g 107 (122)
T 2ys4_A 105 DTG 107 (122)
T ss_dssp SSS
T ss_pred CCC
Confidence 455
No 57
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=79.70 E-value=1.3 Score=36.63 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCccchhhHHHHHhccCchhhhHhh
Q 003172 730 EQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDD 765 (842)
Q Consensus 730 e~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDd 765 (842)
-+.+|.+|.+|||-+.---+=+=.-++=.||+.+|-
T Consensus 9 n~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~Amew 44 (54)
T 2cos_A 9 NRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEY 44 (54)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHH
Confidence 377899999999999654444444555566665543
No 58
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=77.46 E-value=5.6 Score=34.85 Aligned_cols=64 Identities=16% Similarity=0.287 Sum_probs=40.3
Q ss_pred EEEEEEeC--CeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecC-CCCEEE-EcCChh-HHH
Q 003172 5 MVIKVKYG--DTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDE-DGDIVT-LVDDDD-LCD 73 (842)
Q Consensus 5 i~IKv~~g--d~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~De-DGD~VT-L~dd~D-L~~ 73 (842)
|.|.|+.. ..-+.+...+.. +++...|+.+|+++|++++. ...|-|.|+ ++..+. |++|.- |.+
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~----~~TV~~LK~~i~~~~gip~~-~q~L~~~~~~~~~~~~~L~~d~~~L~~ 78 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPD----SMTVQKVKGLLSRLLKVPVS-ELLLSYESSKMPGREIELENDLQPLQF 78 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEET----TSBHHHHHHHHHTTTTCCTT-TCEEEEECTTSCSCEEECCCSSSBSGG
T ss_pred EEEEEEecCCCCCcEEEEECCC----CCCHHHHHHHHHHHHCCChh-HeEEEEEcCCCCceeeccCCCcccHhh
Confidence 55666643 222333444332 59999999999999999864 777777765 344444 655444 444
No 59
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=75.06 E-value=20 Score=31.72 Aligned_cols=76 Identities=20% Similarity=0.267 Sum_probs=50.6
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCceEE
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~Lr 83 (842)
.+.|+|+..+. +|.+.+.. +.+...|+.+|+..++++++ ...|.|. |- .|.|+.-|.++--+.-..|.
T Consensus 17 ~m~I~Vk~~~g--~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~qrLi~~---Gk--~L~D~~tL~~~gi~~g~~i~ 84 (106)
T 1wx7_A 17 LIKVTVKTPKD--KEDFSVTD----TCTIQQLKEEISQRFKAHPD-QLVLIFA---GK--ILKDPDSLAQCGVRDGLTVH 84 (106)
T ss_dssp EEEEEEECSSC--EEEEEEET----TCCHHHHHHHHHHHHTCCTT-TEEEEET---TE--ECCTTSCHHHHTCCTTEEEE
T ss_pred eEEEEEEeCCC--cEEEEECC----CCcHHHHHHHHHHHHCcChh-hEEEEEC---CE--ECCCcCcHHHcCCCCCCEEE
Confidence 36677776553 37777764 57899999999999999765 6677785 32 46777778775223344555
Q ss_pred EEEEecCC
Q 003172 84 IDVHLNND 91 (842)
Q Consensus 84 I~V~l~~~ 91 (842)
+.+.+...
T Consensus 85 l~~~~~~~ 92 (106)
T 1wx7_A 85 LVIKRQHR 92 (106)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 55554443
No 60
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=74.25 E-value=8.5 Score=42.19 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhh
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLC 767 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLc 767 (842)
+..+.+|.+|||-. +.-+.-||...||+++.|+-|+
T Consensus 169 ~~~i~~l~~MGf~~-~~~~~AL~a~~nn~~~A~e~L~ 204 (368)
T 1oqy_A 169 ETMLTEIMSMGYER-ERVVAALRASYNNPHRAVEYLL 204 (368)
T ss_dssp HHHHHHHHTTTCCS-HHHHHHHHHSCSSTTHHHHTTT
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 45679999999985 5566788999999999999997
No 61
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.16 E-value=2.7 Score=35.99 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCccch--hhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVD--LNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~d--lnkEiLr~n~YdLeqsvDdLcg 768 (842)
+..+++|.+| |=++| +.+-+|++|++|++.++|.|-.
T Consensus 19 ~~~v~~L~~M-FP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 19 NQAMDDFKTM-FPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp HHHHHHHHHH-CSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4456789999 98855 6789999999999999998854
No 62
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=73.32 E-value=1.2 Score=36.34 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=16.9
Q ss_pred ccchhHHHHHHhcccccccc
Q 003172 770 SEWDPILEELQEMVSSYVKT 789 (842)
Q Consensus 770 ~EwdplleEl~Emgf~d~~~ 789 (842)
.+|+.-|+.|.||||.|.+.
T Consensus 7 ~~~~~~l~~L~~MGF~d~~~ 26 (54)
T 2dah_A 7 GHFQVQLEQLRSMGFLNREA 26 (54)
T ss_dssp CSSHHHHHHHHHHTCCCHHH
T ss_pred hhHHHHHHHHHHcCCCcHHH
Confidence 36889999999999988654
No 63
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=72.45 E-value=2.4 Score=35.14 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCcc--chhhHHHHHhccCchhhhHhhhhcccc
Q 003172 731 QTLLRELEEMGFKQ--VDLNKEILRMNEYDLEQSVDDLCGVSE 771 (842)
Q Consensus 731 ~~ll~eLe~MGFkq--~dlnkEiLr~n~YdLeqsvDdLcg~~E 771 (842)
+.-+++|.+| |-. .++.+-+|+.|+|+++++||.|-..+|
T Consensus 13 ~~~~~~L~~M-FP~lD~evI~~Vl~a~~G~~~~~IdaLLqms~ 54 (54)
T 1p3q_Q 13 KDTLNTLQNM-FPDMDPSLIEDVCIAAASRIGPCVDALLSLSE 54 (54)
T ss_dssp HHHHHHHHHH-STTSCHHHHHHHHHHSCC--CGGGC-------
T ss_pred HHHHHHHHHH-cccCCHHHHHHHHHHcCCCHHHHHHHHHhhcC
Confidence 3457899999 777 557888999999999999999865543
No 64
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=72.29 E-value=24 Score=32.37 Aligned_cols=74 Identities=22% Similarity=0.344 Sum_probs=59.0
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH-----cc
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR-----QR 78 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~-----q~ 78 (842)
++-||.-|.|.-|-+.++ | .+.+..|+.|+..+|+. .+-|-|+ ..-=.|-|....||-.|+. .-
T Consensus 20 dvRIKfE~~gEkRIi~f~-R-----Pv~f~el~~kv~~afGq----~ldl~y~-nnEL~iPL~~Q~DLDkAvelLDrs~~ 88 (100)
T 2npt_B 20 DVRVKFEHRGEKRILQFP-R-----PVKLEDLRSKAKIAFGQ----SMDLHYT-NNELVIPLTTQDDLDKAVELLDRSIH 88 (100)
T ss_dssp CEEEEEEETTEEEEEEEC-S-----SCCHHHHHHHHHHHHTS----CEEEEEE-ETTEEEECCCHHHHHHHHHHHHHCSS
T ss_pred ceEEEEEecCceEEEecC-C-----CccHHHHHHHHHHHhCC----eeeeEEe-cceeEEecccHHHHHHHHHHhccCcc
Confidence 578999999988888877 3 48999999999999975 5778898 4456778888899888776 24
Q ss_pred CceEEEEEEe
Q 003172 79 LKFLRIDVHL 88 (842)
Q Consensus 79 l~~LrI~V~l 88 (842)
++-|||.+..
T Consensus 89 ~kSLrIlL~~ 98 (100)
T 2npt_B 89 MKSLKILLVI 98 (100)
T ss_dssp CCSEEEEEEE
T ss_pred ccceEEEEec
Confidence 5668887764
No 65
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=71.83 E-value=3.2 Score=34.60 Aligned_cols=38 Identities=13% Similarity=0.401 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCccc--hhhHHHHHhccCchhhhHhhhhcc
Q 003172 731 QTLLRELEEMGFKQV--DLNKEILRMNEYDLEQSVDDLCGV 769 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~--dlnkEiLr~n~YdLeqsvDdLcg~ 769 (842)
+.-|+.|.+| |=.+ ...+-+|+.|++|++.++|.|-..
T Consensus 10 ee~l~~L~em-FP~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 10 EEDLKAIQDM-FPNMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHHH-CSSSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3456789999 9874 467889999999999999988643
No 66
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.95 E-value=7.6 Score=34.07 Aligned_cols=89 Identities=9% Similarity=0.048 Sum_probs=54.4
Q ss_pred ccCCCCcEEEEEEEEcCCCCCCCCCcEEEEecCCC-CCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEEEEEEEE
Q 003172 492 MMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDK-FSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMS 570 (842)
Q Consensus 492 ~V~PGt~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~-m~~~~sv~l~IPv~~V~PGEevdVSV~L~AP~~pG~YiSyWRL~ 570 (842)
.+.-|+.-+++-+|+|+|.. ...+.++-... .+.. ..++-+...++||++..|.|.|. |..+|.|...-.+.
T Consensus 21 ~v~~g~~~~~~~~l~N~g~~----p~~~~~~~~~~~~~~~--f~v~p~~g~i~pg~~~~i~V~f~-~~~~g~f~~~i~v~ 93 (112)
T 2e6j_A 21 KVFTGSAHCYEAILYNKGSI----DALFNMTPPTSALGAC--FVFSPKEGIIEPSGVQAIQISFS-SIILGNFEEEFLVN 93 (112)
T ss_dssp EEESSCCEEEEEEEEECCSS----CEEEEECCCSSHHHHH--CEEESSEEEECTTBCCEEEEEEC-CCCCEEEEEEECEE
T ss_pred eEEECCEEEEEEEEEECCcc----eEEEEEecCCccccCc--EEEECCcCEECCCCEEEEEEEEE-CCCcceEEEEEEEE
Confidence 35567788999999999996 34444433111 0000 11122223478999999999999 58899998766665
Q ss_pred CCCCCccCCeEEEEEEEc
Q 003172 571 SPSGVKFGQRVWVLIQVD 588 (842)
Q Consensus 571 tpdG~~FGdrLWV~I~V~ 588 (842)
. +|..--..|.+.=.|.
T Consensus 94 ~-~g~~~~~~L~i~G~vv 110 (112)
T 2e6j_A 94 V-NGSPEPVKLTIRGCVI 110 (112)
T ss_dssp E-SSCSSCCCEEEEEEEE
T ss_pred E-CCCCceEEEEEEEEEE
Confidence 4 3433234555544444
No 67
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=70.53 E-value=1.6 Score=35.18 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=17.2
Q ss_pred ccchhHHHHHHhcccccccch
Q 003172 770 SEWDPILEELQEMVSSYVKTV 790 (842)
Q Consensus 770 ~EwdplleEl~Emgf~d~~~~ 790 (842)
.+|+.-|+.|.||||.|.+.+
T Consensus 10 ~~~~~~l~~L~~MGF~~~~~~ 30 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNREAN 30 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHH
Confidence 468889999999999776653
No 68
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=69.23 E-value=1.7 Score=34.31 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=16.4
Q ss_pred cchhHHHHHHhcccccccch
Q 003172 771 EWDPILEELQEMVSSYVKTV 790 (842)
Q Consensus 771 EwdplleEl~Emgf~d~~~~ 790 (842)
.|+.-|+.|.+|||.|.+.+
T Consensus 6 ~~~~~i~~L~~MGF~d~~~~ 25 (46)
T 2bwb_A 6 RYEHQLRQLNDMGFFDFDRN 25 (46)
T ss_dssp HTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHH
Confidence 47788999999999877653
No 69
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=69.22 E-value=18 Score=30.82 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=51.3
Q ss_pred CcccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCc
Q 003172 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLK 80 (842)
Q Consensus 1 m~~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~ 80 (842)
|...+.|+|+.-+- +.|.+.+.. +-+...|..+|+...+++++ ...|.|. |- .|.|+.-|.++=-+.-.
T Consensus 1 m~~~m~I~Vk~~~g-~~~~~~v~~----~~TV~~LK~~I~~~~gip~~-~qrL~~~---Gk--~L~D~~tL~~~~I~~g~ 69 (88)
T 2hj8_A 1 MDEPLSILVRNNKG-RSSTYEVRL----TQTVAHLKQQVSGLEGVQDD-LFWLTFE---GK--PLEDQLPLGEYGLKPLS 69 (88)
T ss_dssp -CCEEEEEEEETTS-CEEEEEEES----SSBHHHHHHHHHHHTCSCTT-TEEEESS---SS--CCCTTSBHHHHHCSTTC
T ss_pred CCccEEEEEECCCC-CEEEEEECC----CCcHHHHHHHHHHHhCCChh-HEEEEEC---CE--ECCCCCcHHHcCCCCCC
Confidence 77778888886322 566666664 47899999999999999865 5667775 43 36777778885333444
Q ss_pred eEEEEEE
Q 003172 81 FLRIDVH 87 (842)
Q Consensus 81 ~LrI~V~ 87 (842)
.|.+.+.
T Consensus 70 ~i~l~~~ 76 (88)
T 2hj8_A 70 TVFMNLR 76 (88)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 5555444
No 70
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=69.08 E-value=35 Score=31.75 Aligned_cols=73 Identities=22% Similarity=0.316 Sum_probs=58.4
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH-----cc
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR-----QR 78 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~-----q~ 78 (842)
++-||.-|.+.-|-+.++ | .+.+..|++|+.++|+- .+.|-|+ ..-=.|-|...+||-.|+. .-
T Consensus 31 dvRIKfE~~gEKRIiqf~-R-----Pvkf~dl~qkv~~afGq----~ldl~y~-nnEL~IPL~~Q~DLDkAvelLDrs~~ 99 (111)
T 2c60_A 31 DVRIKFEHNGERRIIAFS-R-----PVKYEDVEHKVTTVFGQ----PLDLHYM-NNELSILLKNQDDLDKAIDILDRSSS 99 (111)
T ss_dssp CEEEEEEETTEEEEEEEC-S-----SCCHHHHHHHHHHHHSS----CCEEEEE-CSSCEEECCSHHHHHHHHHHHHHCSS
T ss_pred ceEEEEEecCceEEEecC-C-----CccHHHHHHHHHHHhCC----eeeeEEe-cceEEEecccHHHHHHHHHHhccCcc
Confidence 578999999987777776 2 48999999999999965 4678888 5567788889999988775 25
Q ss_pred CceEEEEEE
Q 003172 79 LKFLRIDVH 87 (842)
Q Consensus 79 l~~LrI~V~ 87 (842)
++-|||.+.
T Consensus 100 mkSLRIlL~ 108 (111)
T 2c60_A 100 MKSLRILLL 108 (111)
T ss_dssp CCSEEEEEE
T ss_pred ccceEEEEe
Confidence 667888776
No 71
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=68.86 E-value=21 Score=31.72 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=45.9
Q ss_pred cEEEEEEeCCe-eeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEE-EE-cCChhHHHH
Q 003172 4 TMVIKVKYGDT-LRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIV-TL-VDDDDLCDV 74 (842)
Q Consensus 4 ~i~IKv~~gd~-lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~V-TL-~dd~DL~~a 74 (842)
.|.|+|+.... -|.+.+.+.. +.+...|..||+..+++|++ ...|-|.| +|..+ .| .|+.-|.++
T Consensus 15 ~v~l~It~s~~~~~~~~~~v~~----~~TV~~LK~kI~~~~GiP~~-~QrL~~~~-~g~~~~~L~~D~~tL~~Y 82 (95)
T 2kjr_A 15 FIKVNVSNSHNDAVAFEVKLAK----DLTVAQLKTKLEILTGGCAG-TMKVQVFK-GDTCVSTMDNNDAQLGYY 82 (95)
T ss_dssp EEEEEEEESSCSCEEEEEEEET----TCBHHHHHHHHHHHHCSCTT-TEEEEEEE-TTEEEEECCCTTSBHHHH
T ss_pred eEEEEEEECCCCceEEEEEeCc----cCHHHHHHHHHHHHHCcCHH-HeEEEEec-CCcccceeCCCCCCHhHC
Confidence 47778887553 3567777764 58999999999999999876 55666666 46554 34 555557775
No 72
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=68.59 E-value=8.4 Score=38.49 Aligned_cols=71 Identities=7% Similarity=0.058 Sum_probs=48.5
Q ss_pred ccCCCCcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCce----EEEEE
Q 003172 492 MMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGR----YISYW 567 (842)
Q Consensus 492 ~V~PGt~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGEevdVSV~L~AP~~pG~----YiSyW 567 (842)
.+. |+.-+.+.+++|+|...| .+.-+.... .... .+.+...++|||+..|.|.+.+-..+|. +...-
T Consensus 130 ~i~-g~~~~~~f~i~N~G~~pL----~I~~v~~sc--gct~--~~~~~~~i~PGe~~~i~v~~~~~~~~g~~~~~~~~~i 200 (220)
T 2qsv_A 130 QLD-GETTKAAIEIRNVGAGPL----RLHSVTTRN--PALT--AVPDRTEIKPGGSTLLRIAVDPQVMKAEGWQSIAADI 200 (220)
T ss_dssp ECT-TSCEEEEEEEEECSSSCE----EEEEEEECS--TTEE--EEESCSEECTTCEEEEEEEECHHHHHHTTCSEEEEEE
T ss_pred ccC-CCeEEEEEEEEECCCCCE----EEEEEEeCC--CCEe--eecCCccCCCCCEEEEEEEEecCCCCCcccceeccEE
Confidence 567 899999999999999977 333332221 1111 2233345899999999999996444587 77666
Q ss_pred EEEC
Q 003172 568 RMSS 571 (842)
Q Consensus 568 RL~t 571 (842)
.+.+
T Consensus 201 ~v~~ 204 (220)
T 2qsv_A 201 SIIC 204 (220)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 73
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=68.28 E-value=4.9 Score=33.12 Aligned_cols=36 Identities=22% Similarity=0.460 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCccc-hhhHHHHHhccCchhhhHhhh
Q 003172 731 QTLLRELEEMGFKQV-DLNKEILRMNEYDLEQSVDDL 766 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~-dlnkEiLr~n~YdLeqsvDdL 766 (842)
...|..++.|||.-. .-..-+|..-+||+.+.+|.|
T Consensus 11 ~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 11 IESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHh
Confidence 345689999999863 344689999999999999976
No 74
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=67.63 E-value=1.7 Score=36.18 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=17.1
Q ss_pred ccchhHHHHHHhcccccccch
Q 003172 770 SEWDPILEELQEMVSSYVKTV 790 (842)
Q Consensus 770 ~EwdplleEl~Emgf~d~~~~ 790 (842)
..|+.-|+.|.||||.|.+.+
T Consensus 15 ~~~~~qi~~L~~MGF~d~~~~ 35 (58)
T 1wr1_B 15 ERYEHQLRQLNDMGFFDFDRN 35 (58)
T ss_dssp HHTHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHH
Confidence 357888999999999877653
No 75
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=63.00 E-value=21 Score=30.78 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=44.2
Q ss_pred cEEEEEEeCCeeeeEEe-eecCCCCcccCHHHHHHHHHHHhCCCCCCccEE--EEecCCCCEEEEcCChhHHHH
Q 003172 4 TMVIKVKYGDTLRRFNA-RVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTL--TYVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~-~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~l--rY~DeDGD~VTL~dd~DL~~a 74 (842)
.+.|+|++++ +.|.+ .+.. +-+...|..+|++..+++++..-.| +|. | -.|.|+..|.++
T Consensus 7 ~m~i~Vk~~g--~~~~i~~v~~----~~TV~~lK~~I~~~~gip~~~QkLi~~k~~---G--k~L~D~~~L~~~ 69 (90)
T 1v5t_A 7 GLPIIVKWGG--QEYSVTTLSE----DDTVLDLKQFLKTLTGVLPERQKLLGLKVK---G--KPAENDVKLGAL 69 (90)
T ss_dssp SCCEEEEETT--EEEEECSCCS----SSBHHHHHHHHHHHTCCCTTTCEEESCEET---T--EECCTTSBHHHH
T ss_pred eEEEEEEECC--EEEEEEEeCC----CCCHHHHHHHHHHHHCcCHHHeEEEeeccC---C--cCcCCCCCHHHc
Confidence 4667788876 56777 6664 4688999999999999988766555 263 4 346777788875
No 76
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=61.03 E-value=26 Score=31.31 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=48.1
Q ss_pred ccEEEEEEeCCe-eeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEE-EE-cCChhHHHH
Q 003172 3 STMVIKVKYGDT-LRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIV-TL-VDDDDLCDV 74 (842)
Q Consensus 3 ~~i~IKv~~gd~-lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~V-TL-~dd~DL~~a 74 (842)
+.+.|.|+.... .+.+.+.+.. +.+...|..||+..+++|++ ...|-|.+.+|..| .| +|+.-|.++
T Consensus 13 ~~v~l~It~s~~~~~~~e~~v~~----~~TV~~LK~kIe~~~Gip~~-~QrLi~~g~~g~~~~~L~~D~~tL~~Y 82 (97)
T 2kj6_A 13 DSVHLHITHANLKSFSADARFSP----QMSVEAVKEKLWKKCGTSVN-SMALELYDDSGSKVAVLSDDSRPLGFF 82 (97)
T ss_dssp CCEEEEEEETTSSCCCEEEEECT----TCCHHHHHHHHHHHHCCCTT-SEEEEEECSSSCBCCCSSGGGSCHHHH
T ss_pred ceEEEEEEECCCCceEEEEEeCC----CChHHHHHHHHHHHHCcCHH-HeEEEEecCCCcccceecCCcCCHHHC
Confidence 457777777443 3567777664 68999999999999999866 66778888777654 33 454457775
No 77
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=59.77 E-value=2.7 Score=33.98 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=15.8
Q ss_pred cchhHHHHHHhcccccccch
Q 003172 771 EWDPILEELQEMVSSYVKTV 790 (842)
Q Consensus 771 EwdplleEl~Emgf~d~~~~ 790 (842)
+|+.-|+.|.||||.|.+.+
T Consensus 10 ~~~~~l~~L~~MGF~~~~~~ 29 (53)
T 2knz_A 10 RFQQQLEQLNSMGFINREAN 29 (53)
T ss_dssp HHHHHHHHHHTTTCCCHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHH
Confidence 46778999999999766653
No 78
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=59.28 E-value=3.5 Score=42.01 Aligned_cols=45 Identities=31% Similarity=0.373 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhccccchhHHHHH
Q 003172 730 EQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEEL 779 (842)
Q Consensus 730 e~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~~EwdplleEl 779 (842)
++.+++.|.+|||. .+.-.+.|+++++|... ..|+.+ =+-|||||
T Consensus 169 ~~~~v~~~~~mg~~-~~~~~~al~~~~~~~~~-~~~~~~---~~~~~~~~ 213 (215)
T 1tte_A 169 DHDLIDEFESQGFE-KDKIVEVLRRLGVKSLD-PNDNNT---ANRIIEEL 213 (215)
T ss_dssp SHHHHHHHHHHTCC-HHHHHHHHHHSCCSSCC-SSCCHH---HHHHHHHH
T ss_pred cHHHHHHHHHcCCC-HHHHHHHHHHcCCCccc-chhhhh---HHHHHHHH
Confidence 35566889999997 77788999999999988 666433 25788887
No 79
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=58.07 E-value=23 Score=30.91 Aligned_cols=58 Identities=19% Similarity=0.340 Sum_probs=41.7
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a 74 (842)
.+.|+|++++ +.|.+.+.. +.+...|+.+|+...+++++..-.+ |.. -. | ||..|.++
T Consensus 17 ~~~i~Vk~~g--~~~~i~v~~----~~TV~~LK~~I~~~tgip~~~QrL~-~~G---k~--L-dd~tL~~~ 74 (95)
T 1v86_A 17 LVDLKIIWNK--TKHDVKVPL----DSTGSELKQKIHSITGLPPAMQKVM-YKG---LV--P-EDKTLREI 74 (95)
T ss_dssp CEEEEEEETT--EEEEEEECT----TSBHHHHHHHHHHHHCSCSTTCCCB-SSS---BC--C-SSSBHHHH
T ss_pred eEEEEEEECC--EEEEEEECC----CCcHHHHHHHHHHHHCcCHHHeEEE-ECC---ee--C-CcCcHHHC
Confidence 4778888876 567777764 5789999999999999987755444 643 22 4 45577765
No 80
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=57.92 E-value=3.7 Score=35.73 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=16.7
Q ss_pred ccchhHHHHHHhcccccccch
Q 003172 770 SEWDPILEELQEMVSSYVKTV 790 (842)
Q Consensus 770 ~EwdplleEl~Emgf~d~~~~ 790 (842)
..|+.-|+.|.||||.|.+.+
T Consensus 27 ~~ye~qi~qL~eMGF~dr~~~ 47 (74)
T 1vej_A 27 GRYQQELEELKALGFANRDAN 47 (74)
T ss_dssp TTSHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHH
Confidence 457778999999999876653
No 81
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=55.01 E-value=62 Score=28.42 Aligned_cols=60 Identities=25% Similarity=0.418 Sum_probs=42.5
Q ss_pred EEEEEEe--CC-eeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCCh-hHHHH
Q 003172 5 MVIKVKY--GD-TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDD-DLCDV 74 (842)
Q Consensus 5 i~IKv~~--gd-~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~-DL~~a 74 (842)
+.|.|+. ++ .-++|.+.+.. +.+...|+.+|+..++++++ ...|.|.. -.|.||+ -|.++
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~----~~TV~~LK~~I~~~~gip~~-~qrL~~~g-----k~L~D~~~tL~~y 71 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNP----DFELSNFRVLCELESGVPAE-EAQIVYME-----QLLTDDHCSLGSY 71 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECT----TCBHHHHHHHHHHHTCCCGG-GBCEEETT-----EEECCSSSBHHHH
T ss_pred EEEEEEECCCCcCceEEEEEcCC----CCCHHHHHHHHHHHHCcChH-HeEEEECC-----EECCCCcccHHHC
Confidence 4555555 43 23788888875 57899999999999999866 55666753 2566664 58875
No 82
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=53.19 E-value=35 Score=28.01 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=48.9
Q ss_pred CcccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCc
Q 003172 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLK 80 (842)
Q Consensus 1 m~~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~ 80 (842)
|.+.+.|+|+.-+ -+.|.+.+.. +-+...|..+|+...+++++ ...|-|. | -.|.|+.-|.++=-+.-.
T Consensus 1 ~~~~m~i~Vk~~~-g~~~~~~v~~----~~tV~~lK~~i~~~~gip~~-~qrL~~~---G--~~L~d~~tL~~~~i~~~~ 69 (79)
T 3phx_B 1 MDEPLSILVRNNK-GRSSTYEVRL----TQTVAHLKQQVSGLEGVQDD-LFWLTFE---G--KPLEDQLPLGEYGLKPLS 69 (79)
T ss_dssp --CCEEEEEECTT-SCEEEEEECT----TSBHHHHHHHHHHHHTCCGG-GEEEEET---T--EECCTTSBGGGGTCCTTC
T ss_pred CCCCEEEEEEeCC-CCEEEEEECC----cChHHHHHHHHHhhcCCCHH-HEEEEEC---C--EECCCCCcHHHCCCCCCC
Confidence 6777888888743 2456666664 47899999999999999866 5677784 3 246676667764223333
Q ss_pred eEEEEE
Q 003172 81 FLRIDV 86 (842)
Q Consensus 81 ~LrI~V 86 (842)
.|.+.+
T Consensus 70 ~l~l~~ 75 (79)
T 3phx_B 70 TVFMNL 75 (79)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 455444
No 83
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=52.32 E-value=32 Score=35.23 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=52.3
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHH
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~ 73 (842)
.|.+||.+-|....|.+. . .-+...|-++|.+-++|....-|.|.|.|.+|...-|+.+.-+.+
T Consensus 1 ~i~~~V~l~d~~~~~~v~--~----~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~ 64 (294)
T 1ef1_A 1 TISVRVTTMDAELEFAIQ--P----NTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTA 64 (294)
T ss_dssp CEEEEEEETTEEEEEEEC--T----TCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGG
T ss_pred CEEEEEEECCceEEEEEC--C----CCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHh
Confidence 378999999975444444 2 367888889999999999888999999999999888888777765
No 84
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=52.11 E-value=3.7 Score=32.54 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
+.-++.|.+|||-...- .+.|...+.|.+...+-|..
T Consensus 5 ~eaI~rL~~mGF~~~~a-~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 5 KEAIERLKALGFPESLV-IQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHHHTTTTTTTCCHHHH-HHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHH-HHHHHHcCCCHHHHHHHHHh
Confidence 44468899999987554 45899999999999999875
No 85
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=51.83 E-value=56 Score=28.76 Aligned_cols=73 Identities=21% Similarity=0.280 Sum_probs=48.7
Q ss_pred ccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCceE
Q 003172 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (842)
Q Consensus 3 ~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~L 82 (842)
..+.|+|+..+. +|.+.+.. +-+...|+.+|++..+++++ ...|.|. |- .|.|+.-|.++=-+.-..|
T Consensus 21 ~~m~I~Vk~~~g--~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~QrLi~~---Gk--~L~D~~tL~~ygI~~gstI 88 (100)
T 1yqb_A 21 HLIKVTVKTPKD--KEDFSVTD----TCTIQQLKEEISQRFKAHPD-QLVLIFA---GK--ILKDPDSLAQCGVRDGLTV 88 (100)
T ss_dssp TEEEEEEECSSC--EEEEEEET----TCBHHHHHHHHHHHHTCCGG-GEEEEET---TE--ECCTTSBHHHHTCCTTCEE
T ss_pred CeEEEEEEcCCC--cEEEEECC----CCcHHHHHHHHHHHHCcChh-hEEEEEC---CE--ECCCcCcHHHCCCCCCCEE
Confidence 346777776553 36777764 57899999999999999764 6677784 42 4677777887522334345
Q ss_pred EEEEE
Q 003172 83 RIDVH 87 (842)
Q Consensus 83 rI~V~ 87 (842)
.+.+.
T Consensus 89 ~l~~r 93 (100)
T 1yqb_A 89 HLVIK 93 (100)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 44443
No 86
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=51.31 E-value=32 Score=32.35 Aligned_cols=66 Identities=18% Similarity=0.133 Sum_probs=43.3
Q ss_pred cCCCCcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCC
Q 003172 493 MAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELP 560 (842)
Q Consensus 493 V~PGt~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGEevdVSV~L~AP~~p 560 (842)
..+|..++-.=+|+|.|+..=+ .+.+.|.-|+.-.....+. ...++.+++|++..++|.+..+..+
T Consensus 12 p~~g~~vTvsatVkN~Gt~~s~-a~~V~~yl~~p~~gg~~vg-t~tv~~LaaG~s~t~~v~~~~~~~~ 77 (122)
T 2kut_A 12 PFEGEEITVSARVTNRGAAEAH-NVPVAVYLGNPAQGGVEIG-RDTISRIPVGGTGLARVQWKATRKL 77 (122)
T ss_dssp CCTTCEEEEEEEEECCSSSCBC-CCCEEECSSCTTTCCCCCB-CCCCSCBCTTCEEECCEEEECCCCC
T ss_pred CCCCCeEEEEEEEEeCCCcccC-cEEEEEEeCCCccCCeEEe-eEEccccCCCCeEEEEEEEecCCcc
Confidence 4567777777799999998765 4666665554211111111 2335689999999988887777554
No 87
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=51.13 E-value=22 Score=29.32 Aligned_cols=77 Identities=26% Similarity=0.268 Sum_probs=49.8
Q ss_pred ccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCceE
Q 003172 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (842)
Q Consensus 3 ~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~L 82 (842)
+.+.|+|+.-+ -+.|.+.+.. +.+...|+.+|++.++++++ ...|.|.. -.|.|+..|.++=-+.-..|
T Consensus 2 s~m~i~vk~~~-g~~~~~~v~~----~~tV~~lK~~i~~~~~i~~~-~qrL~~~g-----~~L~d~~tL~~~~i~~~~~l 70 (85)
T 3mtn_B 2 SHMQIFVKTLT-GKTITLEVEP----SDTIENVKAKIQDKEGIPPD-QQRLIFAG-----KQLEDGRTLSDYNIQKWSTL 70 (85)
T ss_dssp -CEEEEEECTT-SCEEEEEECT----TCBHHHHHHHHHHHHCCCGG-GCEEEETT-----EECCTTSBTGGGTCCTTCEE
T ss_pred CeEEEEEEcCC-CCEEEEEECC----CCCHHHHHHHHHHHHCcChH-HEEEEECC-----EECCCCCCHHHcCCCCCCEE
Confidence 35677787653 2556777664 57999999999999999766 56777843 24667766766411333355
Q ss_pred EEEEEecC
Q 003172 83 RIDVHLNN 90 (842)
Q Consensus 83 rI~V~l~~ 90 (842)
.+.+.+.+
T Consensus 71 ~l~~r~~G 78 (85)
T 3mtn_B 71 FLLLRLRG 78 (85)
T ss_dssp EEECCCCC
T ss_pred EEEEECcC
Confidence 55554433
No 88
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=49.81 E-value=87 Score=25.99 Aligned_cols=73 Identities=21% Similarity=0.176 Sum_probs=47.9
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCceEE
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~Lr 83 (842)
.+.|+|+.-+ -+.|.+.+.. +.+...|..+|++..+++++ ...|.|. |- .|.|+.-|.++=-+.-..|.
T Consensus 7 ~m~i~Vk~~~-g~~~~~~v~~----~~tV~~lK~~i~~~~gi~~~-~qrL~~~---Gk--~L~d~~tL~~~~i~~g~~i~ 75 (87)
T 1wh3_A 7 GIQVFVKNPD-GGSYAYAINP----NSFILGLKQQIEDQQGLPKK-QQQLEFQ---GQ--VLQDWLGLGIYGIQDSDTLI 75 (87)
T ss_dssp SEEEEEEETT-TEEEEEEECS----SSBHHHHHHHHHHHTCCCTT-TEEEEET---TE--ECCSSSBHHHHTCCTTEEEE
T ss_pred CEEEEEEcCC-CCEEEEEeCC----CChHHHHHHHHHHHhCCChH-HEEEEEC---CE--EccCCCCHHHCCCCCCCEEE
Confidence 4667777532 1456666664 57899999999999999755 6667785 32 46777778875223343455
Q ss_pred EEEE
Q 003172 84 IDVH 87 (842)
Q Consensus 84 I~V~ 87 (842)
+.+.
T Consensus 76 l~~~ 79 (87)
T 1wh3_A 76 LSKK 79 (87)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 5444
No 89
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=49.35 E-value=36 Score=29.60 Aligned_cols=55 Identities=15% Similarity=0.315 Sum_probs=39.4
Q ss_pred ccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEE--EcCChhHHHHHHccCceEEE
Q 003172 29 DLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVT--LVDDDDLCDVMRQRLKFLRI 84 (842)
Q Consensus 29 dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VT--L~dd~DL~~a~~q~l~~LrI 84 (842)
..+...|.+||+..+++|++ .-.|-|.|.+|.++- ++|+.-|.++=-+.-..|.|
T Consensus 24 s~TI~~lK~ki~~~~Gip~~-~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 24 AQTIESIKENVFTHFATPPE-YMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp TSBHHHHHHHHHTTSCCCGG-GEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred cCcHHHHHHHHHHHHCCCHH-HEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 48999999999999999876 557788899888764 44555566642244434544
No 90
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=49.02 E-value=30 Score=39.82 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=53.5
Q ss_pred CcccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHH
Q 003172 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (842)
Q Consensus 1 m~~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~ 73 (842)
|...+.+||.|-|..-.|.+. . .-+...|-.+|.+-++|....-|.|.|.|.+|...-|+.+.-+.+
T Consensus 1 ~~k~i~v~V~llDgt~e~~vd--~----~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~ 67 (575)
T 2i1j_A 1 MPKSMNVRVTTMDAELEFAIQ--Q----TTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQ 67 (575)
T ss_dssp --CEEEEEEECSSCEEEEEEE--T----TCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGG
T ss_pred CCceEEEEEEeCCCeEEEEEC--C----CCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHH
Confidence 777899999998875445554 2 356788889999999999888999999999999998988776655
No 91
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=48.30 E-value=23 Score=33.31 Aligned_cols=78 Identities=13% Similarity=0.230 Sum_probs=55.1
Q ss_pred eeccCCCcccCCCCcEEEEEEEEcCCCCCCCCCcEEE-EecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCce
Q 003172 484 DVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLV-WIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGR 562 (842)
Q Consensus 484 DVTIpDGT~V~PGt~FtKtWrLrNsGt~~WP~Gt~Lv-fvgGD~m~~~~sv~l~IPv~~V~PGEevdVSV~L~AP~~pG~ 562 (842)
+++.|+ .+.+|+..+=.=+|+|.|...= .++.+. +++|...+. ..+ .+++|++..|++... |..+|.
T Consensus 22 ~is~P~--~v~~G~~~ti~vtV~N~G~~~a-~~~~V~lyvng~~v~t-------~~v-~La~G~s~tv~f~~~-~~~~G~ 89 (127)
T 3idu_A 22 EIKGPD--VVGVNKLAEYEVHVKNLGGIGV-PSTKVRVYINGTLYKN-------WTV-SLGPKEEKVLTFNWT-PTQEGM 89 (127)
T ss_dssp EEESCS--EECTTCCEEEEEEEEECSSSCE-EEEEEEEEETTEEEEE-------EEE-EECTTCEEEEEEEEC-CSSCEE
T ss_pred EecCCC--cccCCCEEEEEEEEEECCCCcc-CCcEEEEEECCEEEee-------EEe-ccCCCCeEEEEEEEE-cCCCcE
Confidence 567677 8899999999999999999875 466665 455543221 122 488999999999987 777888
Q ss_pred EEEEEEEECCCC
Q 003172 563 YISYWRMSSPSG 574 (842)
Q Consensus 563 YiSyWRL~tpdG 574 (842)
| ...-..++++
T Consensus 90 ~-~v~AvVD~~n 100 (127)
T 3idu_A 90 Y-RINATVDEEN 100 (127)
T ss_dssp E-EEEEEESTTC
T ss_pred E-EEEEEEcCCC
Confidence 7 3333445444
No 92
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=47.24 E-value=61 Score=36.12 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=54.9
Q ss_pred ccCCCcccCCCCcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecC--CCCceE
Q 003172 486 NVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAP--ELPGRY 563 (842)
Q Consensus 486 TIpDGT~V~PGt~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGEevdVSV~L~AP--~~pG~Y 563 (842)
++|+ ..++||..++-+|+|.|.+..+= .|-++...-. -+ .....++..++||+...+.++++.| ..+|.|
T Consensus 363 ~~~~-~~~~~g~~~~~~~~vtn~~~~~~-~~~~~~~~~~--~~----~~~~~~~~~~~~g~~~t~~~~vt~~~~~~~g~y 434 (601)
T 1w8o_A 363 TIPD-VALEPGQQVTVPVAVTNQSGIAV-PKPSLQLDAS--PD----WQVQGSVEPLMPGRQAKGQVTITVPAGTTPGRY 434 (601)
T ss_dssp ECCC-EEECTTCEEEEEEEEECCSSSCB-SSCEEEEECC--TT----SEEEEEECCBCTTCEEEEEEEEECCTTCCCEEE
T ss_pred cCcc-ceecCCceeEEEEEEECCCceec-cCceEEEecC--CC----cEEeccccccCCCCceEEEEEEecCCCCCCCcE
Confidence 3444 56889999999999999887665 3444432111 01 1111134578999999998888888 446899
Q ss_pred EEEEEEECCCC
Q 003172 564 ISYWRMSSPSG 574 (842)
Q Consensus 564 iSyWRL~tpdG 574 (842)
.--.++...+|
T Consensus 435 ~l~~~~~~~~~ 445 (601)
T 1w8o_A 435 RVGATLRTSAG 445 (601)
T ss_dssp EEEEEEEETTE
T ss_pred EeeEEEEecCc
Confidence 88788877666
No 93
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=46.83 E-value=65 Score=29.12 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=50.8
Q ss_pred eccCCCcccCCCCcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEE
Q 003172 485 VNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYI 564 (842)
Q Consensus 485 VTIpDGT~V~PGt~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGEevdVSV~L~AP~~pG~Yi 564 (842)
+.+++-. .-|+.++-.-.++|.=..+- .+|.|..-|- -+... ..+.+..+.||+++.+.+.|+ |.++|.-+
T Consensus 10 I~v~g~~--~v~~~l~v~vsf~NPL~~~L-~~c~~~vEG~-GL~~~----~~~~~~~v~pg~~~~~~~~~~-P~~~G~~~ 80 (102)
T 2xzz_A 10 LTLLGAA--VVGQECEVQIVFKNPLPVTL-TNVVFRLEGS-GLQRP----KILNVGDIGGNETVTLRQSFV-PVRPGPRQ 80 (102)
T ss_dssp EEESSCC--CSSSCEEEEEEEECCSSSCB-CSEEEEEEET-TTEEE----EEEEECCBCTTCEEEEEEEEC-CCSCSSCC
T ss_pred EEECCCc--ccCCeEEEEEEEECCCCCcc-cCEEEEEECC-CCCcc----eEEEcCcCCCCCEEEEEEEEe-cCcccceE
Confidence 3444433 33889999999999877776 7898865543 22221 234456799999999999998 99999743
No 94
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=46.05 E-value=7.1 Score=33.52 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=16.5
Q ss_pred cchhHHHHHHhcccccccchh
Q 003172 771 EWDPILEELQEMVSSYVKTVM 791 (842)
Q Consensus 771 EwdplleEl~Emgf~d~~~~~ 791 (842)
.|..-|+.|.+|||.|.+.+.
T Consensus 18 ~y~~ql~qL~~MGF~d~~an~ 38 (67)
T 2dna_A 18 RFSKEMECLQAMGFVNYNANL 38 (67)
T ss_dssp HTHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHH
Confidence 356678999999999887643
No 95
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=45.49 E-value=21 Score=29.54 Aligned_cols=75 Identities=25% Similarity=0.276 Sum_probs=48.6
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH-HHccCceE
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV-MRQRLKFL 82 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a-~~q~l~~L 82 (842)
.+.|+|+.-+ -+.|.+.+.. +.+...|+.+|++.++++++ ...|.|... .|.|+..|.++ ++ .-..|
T Consensus 3 ~m~i~vk~~~-g~~~~~~v~~----~~tV~~lK~~i~~~~~ip~~-~qrL~~~g~-----~L~d~~tL~~~~i~-~~~~i 70 (85)
T 3n3k_B 3 HMRIVVKTLM-GRTIILEVEP----SDTIENVKAKIQDKEGIPPD-QQRLIFAGK-----QLEDGRTLSDYNIH-NHSAL 70 (85)
T ss_dssp -CEEEEECGG-GCEEEEECCT----TCBHHHHHHHHHHHHCCCGG-GEEEEETBE-----ECCTTCBTTTTTCC-TTCEE
T ss_pred eEEEEEEeCC-CCEEEEEECC----CCcHHHHHHHHHHHHCCCHH-HEEEEECCe-----ECCCCCCHHHCCCC-CCCEE
Confidence 4566776532 2456777664 57999999999999999765 677888432 46777667764 33 33456
Q ss_pred EEEEEecC
Q 003172 83 RIDVHLNN 90 (842)
Q Consensus 83 rI~V~l~~ 90 (842)
.+.+.+.+
T Consensus 71 ~l~~rl~G 78 (85)
T 3n3k_B 71 YLLLKLRG 78 (85)
T ss_dssp EEEECCC-
T ss_pred EEEEeccC
Confidence 66555443
No 96
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=45.09 E-value=27 Score=28.26 Aligned_cols=58 Identities=21% Similarity=0.376 Sum_probs=40.1
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a 74 (842)
+.|.|+.++ +.|.+.+.. +.+...|+.+|+..++++++ ...|.|. |- .|.|+.-|.++
T Consensus 5 m~i~vk~~g--~~~~~~v~~----~~tV~~LK~~i~~~~~i~~~-~qrL~~~---gk--~L~d~~tL~~~ 62 (77)
T 2bwf_A 5 LNIHIKSGQ--DKWEVNVAP----ESTVLQFKEAINKANGIPVA-NQRLIYS---GK--ILKDDQTVESY 62 (77)
T ss_dssp EEEEEEETT--EEEEEEECT----TCBHHHHHHHHHHHHCCCGG-GEEEEET---TE--ECCTTSBTGGG
T ss_pred EEEEEEECC--EEEEEEECC----CCcHHHHHHHHHHHhCCCHH-HEEEEEC---Ce--EcCCCCCHHHc
Confidence 556666644 456667664 57899999999999999754 6777785 32 45666556653
No 97
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=44.68 E-value=1e+02 Score=27.56 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=50.8
Q ss_pred cEEEEEEeCC---------eeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH
Q 003172 4 TMVIKVKYGD---------TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 4 ~i~IKv~~gd---------~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a 74 (842)
.|.|+|+.-+ .-+.|.+.+.. +.+...|..+|+...+++++ ...|.|. |- .|.|+.-|.++
T Consensus 25 ~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~QrL~~~---Gk--~L~D~~tL~~y 94 (115)
T 1we7_A 25 PVSIKVQVPNMQDKTEWKLNGQGLVFTLPL----TDQVSVIKVKIHEATGMPAG-KQKLQYE---GI--FIKDSNSLAYY 94 (115)
T ss_dssp CEEEEEEECCCSSSCSSCCSSEEEEEEECS----CSBTHHHHHHHHHHSSCCTT-TEEEEET---TE--EECTTSBHHHH
T ss_pred CEEEEEEcCCCccccccccCCeEEEEEECC----CCCHHHHHHHHHHHHCCChH-HEEEEEC---CE--ECCCCCCHHHC
Confidence 4777777754 23567777664 57889999999999999765 6667784 43 46777778885
Q ss_pred HHccCceEEEEEEe
Q 003172 75 MRQRLKFLRIDVHL 88 (842)
Q Consensus 75 ~~q~l~~LrI~V~l 88 (842)
--+.-..|.+.+.+
T Consensus 95 ~i~~g~~i~lv~rl 108 (115)
T 1we7_A 95 NMASGAVIHLALKE 108 (115)
T ss_dssp TCCSSCEEEEEECC
T ss_pred CCCCCCEEEEEEEc
Confidence 32334455555543
No 98
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=43.35 E-value=36 Score=29.25 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=42.5
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a 74 (842)
.+.|+|+..+ +.|.+.+.. +.+...|+.+|++..+++++ ...|.|. |- .|.|+.-|.++
T Consensus 17 ~m~i~Vk~~g--~~~~~~v~~----~~TV~~LK~~I~~~~gip~~-~qrL~~~---Gk--~L~D~~tL~~~ 75 (96)
T 1wx8_A 17 IIRVSVKTPQ--DCHEFFLAE----NSNVRRFKKQISKYLHCNAD-RLVLIFT---GK--ILRDQDILSQR 75 (96)
T ss_dssp EEEEEEECSS--SEEEEEEET----TCCHHHHHHHHHHHTCSCTT-TBCCEET---TE--ECCTTSCHHHH
T ss_pred cEEEEEEECC--eEEEEEECC----CCCHHHHHHHHHHHhCCCHH-HEEEEEC---CE--ECCCcCCHHHC
Confidence 4667777763 566666664 57899999999999999866 5566674 32 46777778775
No 99
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=42.07 E-value=17 Score=32.18 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=33.0
Q ss_pred CcccCceecCCCCCCCccccceecCCCC---Ccchhhhhhhc-CCCCcceEEecC
Q 003172 374 GMFHKGVRCDGCGVHPITGPRFKSKVKD---DYDLCSICFAA-MGSEADYIRIDR 424 (842)
Q Consensus 374 ~vvH~GV~CDgC~~~PI~G~RYKCsvC~---DyDLCs~C~a~-~~~~H~firI~~ 424 (842)
...|.|-.|. ++-..-..-|+|..|. .+-||..||.. .|..|.|.....
T Consensus 3 ~~~h~g~~Cg--~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~~~~s 55 (82)
T 3nis_A 3 VHKHTGRNCG--RKFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDIC 55 (82)
T ss_dssp CCCCTTSCCC--CBCCTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEEEEEC
T ss_pred ccccCCCCCC--CcccCCCEEEEeeccCCCCCceEchhhCCCCCcCCceEEEEEe
Confidence 3467777765 2222345669999994 36689999977 467899876543
No 100
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=40.70 E-value=52 Score=30.37 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=47.2
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCceEE
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~Lr 83 (842)
.+.|+|+.. -+.|.+.+.. +.+...|+.+|+..++++++ ...|.|. |- .|.|+.-|.++=-+.-..|.
T Consensus 32 ~m~I~Vk~~--g~~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~QrLi~~---Gk--~L~D~~tL~dygI~~gstI~ 99 (125)
T 1j8c_A 32 IIKVTVKTP--KEKEEFAVPE----NSSVQQFKEAISKRFKSQTD-QLVLIFA---GK--ILKDQDTLIQHGIHDGLTVH 99 (125)
T ss_dssp CEEEEEECS--SCEEEEEECT----TCCHHHHHHHHHHHHCSCSS-SEEEEET---TE--EESTTSCGGGTTCSSSEEEE
T ss_pred cEEEEEEeC--CeEEEEEECC----CCcHHHHHHHHHHHHCcCcc-eEEEEEC---CE--EcCCCCCHHHcCCCCCCEEE
Confidence 467777775 3567777764 57899999999999999765 6677785 43 46777667774222333444
Q ss_pred EEE
Q 003172 84 IDV 86 (842)
Q Consensus 84 I~V 86 (842)
+.+
T Consensus 100 lv~ 102 (125)
T 1j8c_A 100 LVI 102 (125)
T ss_dssp EEE
T ss_pred EEe
Confidence 433
No 101
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.37 E-value=59 Score=28.47 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=41.3
Q ss_pred cEEEEEEeCCeeeeE-EeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHH
Q 003172 4 TMVIKVKYGDTLRRF-NARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf-~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~ 73 (842)
.+.|+|++++ +.| .+.+.. +-+...|..+|++..+++++..-.| |. |- .|.|+ .|.+
T Consensus 7 ~m~i~Vk~~g--~~~~~l~v~~----~~TV~~lK~~I~~~tgip~~~QkLi-~~---Gk--~L~D~-tL~~ 64 (96)
T 1wgg_A 7 GYSVTVKWGK--EKFEGVELNT----DEPPMVFKAQLFALTGVQPARQKVM-VK---GG--TLKDD-DWGN 64 (96)
T ss_dssp EEEEEEEETT--EEEEEEEEES----SSCHHHHHHHHHHHTCCCTTTSCCE-ET---TE--ECCSS-CCCS
T ss_pred EEEEEEEECC--EEEEEEEECC----CCcHHHHHHHHHHHHCcCHHHeEEE-EC---Cc--CCCCC-CHHH
Confidence 4778888877 667 477774 4688999999999999998766555 63 42 35555 5555
No 102
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=40.18 E-value=1.5e+02 Score=24.70 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=47.4
Q ss_pred cEEEEEEeCCeeeeEEee-ecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCceE
Q 003172 4 TMVIKVKYGDTLRRFNAR-VDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~-l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~L 82 (842)
.+.|+|+.-+--+.|.+. +.. +.+...|..+|++..+++++ ...|.|. |- .|.|+.-|.++=-+.-..|
T Consensus 7 ~m~i~Vk~~~g~~~~~l~~v~~----~~tV~~lK~~i~~~~gip~~-~qrL~~~---gk--~L~d~~tL~~~~i~~g~~i 76 (89)
T 1wy8_A 7 GMWIQVRTIDGSKTCTIEDVSR----KATIEELRERVWALFDVRPE-CQRLFYR---GK--QLENGYTLFDYDVGLNDII 76 (89)
T ss_dssp CEEEEEEETTCSCEEEEEEECT----TCBHHHHHHHHHHHSCCCTT-TEEEEET---TE--ECCSSSBHHHHTCCTTCEE
T ss_pred cEEEEEEECCCCceEEEEecCC----CCCHHHHHHHHHHHHCcChh-hEEEEEC---Ce--ECCCCCCHHHCCCCCCCEE
Confidence 456666653212456663 664 57899999999999999755 6677784 42 4677777887522333355
Q ss_pred EEEEEe
Q 003172 83 RIDVHL 88 (842)
Q Consensus 83 rI~V~l 88 (842)
.+.+.+
T Consensus 77 ~l~~~~ 82 (89)
T 1wy8_A 77 QLLVRP 82 (89)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 554443
No 103
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.86 E-value=54 Score=30.89 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=47.5
Q ss_pred ccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH
Q 003172 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 3 ~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a 74 (842)
+.++|||+....--+|.+.+.. +.....|.+++...|++|++ ...|.|. |- .|-|++=|..+
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~----d~TV~dLKe~ls~~~~iP~e-~qrLIy~---GK--iLKD~eTL~~~ 75 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKV----DTILKYLKDHFSHLLGIPHS-VLQIRYS---GK--ILKNNETLVQH 75 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECS----SSCSHHHHHHHHHHHTCCTT-TEEEEET---TE--EECSSCCHHHH
T ss_pred ccEEEEEEEcCCCcEEEEEeCC----CCcHHHHHHHHHhhhCCChH-HEEEEEC---Ce--EcCCcchHHHc
Confidence 5689999855445678888774 68999999999999999754 7788997 55 34666667774
No 104
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=39.59 E-value=95 Score=25.34 Aligned_cols=74 Identities=15% Similarity=0.251 Sum_probs=48.7
Q ss_pred CcccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCc
Q 003172 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLK 80 (842)
Q Consensus 1 m~~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~ 80 (842)
|+. +.|+|+.-+- +.|.+.+.. +-+...|..+|+...+++++ ...|-| +|. .|.|+.-|.++=-+.-.
T Consensus 1 m~~-m~i~vk~~~g-~~~~~~v~~----~~tv~~lk~~i~~~~gi~~~-~qrL~~---~G~--~L~d~~tl~~~~i~~~~ 68 (79)
T 2uyz_B 1 MEY-IKLKVIGQDS-SEIHFKVKM----TTHLKKLKESYCQRQGVPMN-SLRFLF---EGQ--RIADNHTPKELGMEEED 68 (79)
T ss_dssp CCE-EEEEEECTTC-CEEEEEEET----TSCTHHHHHHHHHHHTCCGG-GEEEEE---TTE--ECCTTCCHHHHTCCTTE
T ss_pred CCe-EEEEEECCCC-CEEEEEECC----CChHHHHHHHHHHHHCCCcc-cEEEEE---CCE--EeCCCCCHHHcCCCCCC
Confidence 555 7788885331 445566553 46889999999999999866 778888 364 45677777775223343
Q ss_pred eEEEEE
Q 003172 81 FLRIDV 86 (842)
Q Consensus 81 ~LrI~V 86 (842)
.|.+.+
T Consensus 69 ~i~l~~ 74 (79)
T 2uyz_B 69 VIEVYQ 74 (79)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 454443
No 105
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=38.55 E-value=59 Score=28.08 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=45.4
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCceEE
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~Lr 83 (842)
.+.|+|+.| +.|.+.+.. +-+...|..+|++..+++++ ...|.|. |- .|.|+.-|.++=-+.-..|.
T Consensus 19 ~m~I~Vk~g---~~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~qrLi~~---Gk--~L~D~~tL~~y~I~~gstI~ 85 (93)
T 2l7r_A 19 SMQLFVRAQ---ELHTFEVTG----QETVAQIKAHVASLEGIAPE-DQVVLLA---GA--PLEDEATLGQCGVEALTTLE 85 (93)
T ss_dssp -CEEEEESS---SEEEEECCS----SCBHHHHHHHHHHHHTCCGG-GCEEEET---TE--ECCTTSBHHHHTCCSSCEEE
T ss_pred cEEEEEECC---CEEEEEeCC----CCcHHHHHHHHHHHhCcChh-HEEEEEC---CE--ECCCCCcHHHCCCCCCCEEE
Confidence 356777763 456666664 57899999999999999765 6677775 42 46777778775223333444
Q ss_pred EE
Q 003172 84 ID 85 (842)
Q Consensus 84 I~ 85 (842)
+.
T Consensus 86 lv 87 (93)
T 2l7r_A 86 VA 87 (93)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 106
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=38.44 E-value=1.4e+02 Score=25.86 Aligned_cols=71 Identities=24% Similarity=0.405 Sum_probs=47.1
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCC-hhHHHHHHccCceEE
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDD-DDLCDVMRQRLKFLR 83 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd-~DL~~a~~q~l~~Lr 83 (842)
+.|.|+..+. .|.+.+.. +.+...|+.+|+...+++++ ...|.|. | -.|.|+ .-|.++=-+.-..|.
T Consensus 16 ~~I~Vk~~~~--~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~QrLi~~---G--k~L~D~~~tL~~ygI~~gstl~ 83 (94)
T 2kan_A 16 IHVTVKFPSK--QFTVEVDR----TETVSSLKDKIHIVENTPIK-RMQLYYS---G--IELADDYRNLNEYGITEFSEIV 83 (94)
T ss_dssp EEEEEECSSC--EEEEEECT----TCBHHHHHHHHHHHSSSCTT-TEEEEET---T--EEECCTTSBHHHHTCCTTEEEE
T ss_pred EEEEEEcCCc--EEEEEECC----CCcHHHHHHHHHHHHCcCHH-HEEEEEC---C--EECCCCcccHHHCCCCCCCEEE
Confidence 5566665543 67777774 57899999999999999765 5666675 3 256777 678875223343455
Q ss_pred EEEE
Q 003172 84 IDVH 87 (842)
Q Consensus 84 I~V~ 87 (842)
+.+.
T Consensus 84 lv~r 87 (94)
T 2kan_A 84 VFLK 87 (94)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 4443
No 107
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=38.37 E-value=1.2e+02 Score=25.68 Aligned_cols=60 Identities=23% Similarity=0.406 Sum_probs=42.5
Q ss_pred ccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH
Q 003172 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 3 ~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a 74 (842)
+++.+.+++++.. |.+.+.. +.+...|+.+|++..+++++ ...|.|. |- .|.|+.-|.++
T Consensus 11 ~~~~~~~~~~g~~--~~l~v~~----~~TV~~LK~~I~~~~gip~~-~qrL~~~---Gk--~L~D~~tL~~~ 70 (85)
T 2kd0_A 11 STIKLTVKFGGKS--IPLSVSP----DCTVKDLKSQLQPITNVLPR-GQKLIFK---GK--VLVETSTLKQS 70 (85)
T ss_dssp CCEEEEEEETTEE--EEEEECT----TSBHHHHHHHHHHHHCCCTT-TCEEEET---TE--ECCTTCBTTTT
T ss_pred CcEEEEEEECCEE--EEEEECC----CCcHHHHHHHHHHHHCcChH-HEEEEEC---Ce--ECCCcCCHHHC
Confidence 4577888898854 5555553 47899999999999999865 5566674 43 45666556653
No 108
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=38.14 E-value=11 Score=35.03 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=16.5
Q ss_pred ccchhHHHHHHhcccccccc
Q 003172 770 SEWDPILEELQEMVSSYVKT 789 (842)
Q Consensus 770 ~EwdplleEl~Emgf~d~~~ 789 (842)
..|+.-|+.|+||||.|.+.
T Consensus 64 ~~~~~qL~qL~eMGF~d~~~ 83 (108)
T 2cwb_A 64 SQWQPQLQQLRDMGIQDDEL 83 (108)
T ss_dssp CTTHHHHHHHHTTTCCCHHH
T ss_pred cchHHHHHHHHHcCCCCHHH
Confidence 46888999999999988543
No 109
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=37.13 E-value=41 Score=31.61 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.2
Q ss_pred CCCCCCEEEEEEEEecCCCCceEE
Q 003172 541 GVPVEGEIDIAVDFTAPELPGRYI 564 (842)
Q Consensus 541 ~V~PGEevdVSV~L~AP~~pG~Yi 564 (842)
.++|||+..+.+.+-.+..||.|+
T Consensus 73 tl~pGE~~~f~~~w~~~~~pG~Yt 96 (120)
T 3isy_A 73 TLESGETYDFSDVWKEVPEPGTYE 96 (120)
T ss_dssp EECTTCEEEEEEEESSCCCSEEEE
T ss_pred EECCCCEEEEEEEeCCCCCCccEE
Confidence 378999999999999778899996
No 110
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=36.61 E-value=42 Score=28.65 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhccccchhHHHHHHhcccccccchhh
Q 003172 732 TLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMVSSYVKTVMK 792 (842)
Q Consensus 732 ~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~~EwdplleEl~Emgf~d~~~~~~ 792 (842)
.+..=|++.||.| =.+++++|+||... |+...+ +.|+|||+.......|
T Consensus 14 ~V~~WL~~lgl~~---Y~~~F~~~~idg~~----Ll~Lt~-----~dL~~lGI~~~ghr~k 62 (81)
T 3bq7_A 14 EVAAWLEHLSLCE---YKDIFTRHDIRGSG----LLHLER-----RDLKDLGVTKVGHMKR 62 (81)
T ss_dssp HHHHHHHHTTCGG---GHHHHHHTTCCHHH----HTTCCH-----HHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHCCCHH---HHHHHHHcCCCHHH----HCcCCH-----HHHhHcCCCCHHHHHH
Confidence 3446788889988 36899999999876 444443 5688999976544333
No 111
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=36.61 E-value=80 Score=26.85 Aligned_cols=65 Identities=14% Similarity=0.291 Sum_probs=44.9
Q ss_pred cccEEEEEEeCCeeeeEEeeecCC-CCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCCh-hHHHH
Q 003172 2 ESTMVIKVKYGDTLRRFNARVDEN-EKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDD-DLCDV 74 (842)
Q Consensus 2 ~~~i~IKv~~gd~lRRf~~~l~~n-~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~-DL~~a 74 (842)
...+.|+|++.+ ++|.+.+..+ ++.+.+...|+.+|++..+++++ ...|.|. |- .|.|++ .|.++
T Consensus 5 ~~~~~v~Vk~~~--~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~-~qrL~~~---Gk--~L~D~~~~L~~~ 71 (92)
T 1wxv_A 5 SSGLTVTVTHSN--EKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQS-FQKLIFK---GK--SLKEMETPLSAL 71 (92)
T ss_dssp CSSEEEEEECSS--SEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTT-TCEEEET---TE--EECCSSSBHHHH
T ss_pred CCeEEEEEEECC--EEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHH-HEEEEEC---Ce--ecCCCcccHHHC
Confidence 456889999865 5667776642 12247889999999999999865 5566785 32 355533 57775
No 112
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=36.23 E-value=19 Score=38.66 Aligned_cols=36 Identities=14% Similarity=0.394 Sum_probs=28.6
Q ss_pred ccCceecCCCCCCCccc---cceecCCCCCcchhhhhhhcC
Q 003172 376 FHKGVRCDGCGVHPITG---PRFKSKVKDDYDLCSICFAAM 413 (842)
Q Consensus 376 vH~GV~CDgC~~~PI~G---~RYKCsvC~DyDLCs~C~a~~ 413 (842)
.+.-..|+.|+ ..+.| -+|+|..|- +..|..|....
T Consensus 354 ~~~~t~C~~C~-~~~~g~~~qg~~C~~C~-~~~h~~C~~~~ 392 (406)
T 2vrw_B 354 FEETTSCKACQ-MLLRGTFYQGYRCYRCR-APAHKECLGRV 392 (406)
T ss_dssp CSSCCBCTTTC-CBCCSSSSCEEEETTTC-CEECGGGGGGS
T ss_pred CCCCCCCcccc-chhceeCCCCCCCCCCc-CccchhhhhhC
Confidence 44568899999 56666 789999996 88999998763
No 113
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=35.59 E-value=2.4e+02 Score=26.70 Aligned_cols=86 Identities=9% Similarity=-0.008 Sum_probs=44.7
Q ss_pred ccCCCCcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCC---CCceeeecc-CCCCCCCCEEEEEEEEecCCCCceEEEEE
Q 003172 492 MMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSD---GVSVEIEVP-ADGVPVEGEIDIAVDFTAPELPGRYISYW 567 (842)
Q Consensus 492 ~V~PGt~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~---~~sv~l~IP-v~~V~PGEevdVSV~L~AP~~pG~YiSyW 567 (842)
.|++|.++ ++++.|.|...| -+-.+.-. |..+.. ...+..... ...+.||+....++.|++ ++|.| |
T Consensus 64 ~V~~GD~V--~~~~tN~~~~~~-H~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~--~pGtY---~ 134 (154)
T 2cal_A 64 EIPAGATV--DVTFINTNKGFG-HSFDITKK-GPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP--TAGTY---Y 134 (154)
T ss_dssp EECTTCEE--EEEEEECCTTCC-CCCEEESC-CSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC--CSEEE---E
T ss_pred EEeCCCEE--EEEEEcCCCCee-eEEEEeec-CcchhccccccccccccccccccCCCCceEEEEEEEE--CCceE---E
Confidence 56777644 477889864443 55555422 222211 001000000 125789997778888885 99965 6
Q ss_pred EEECCCCCccCCeEEEEEEE
Q 003172 568 RMSSPSGVKFGQRVWVLIQV 587 (842)
Q Consensus 568 RL~tpdG~~FGdrLWV~I~V 587 (842)
=.|+--|.. ..-.+-.|.|
T Consensus 135 y~C~~~gH~-~~GM~G~IiV 153 (154)
T 2cal_A 135 YVCQIPGMA-ATGMFGKIVV 153 (154)
T ss_dssp EECCSTTTG-GGTCEEEEEE
T ss_pred EECCCCCHH-HCCCEEEEEE
Confidence 666533322 1124445544
No 114
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=35.54 E-value=7.8 Score=39.46 Aligned_cols=37 Identities=19% Similarity=0.430 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
+..++.|.+|||...+ .-+.|+.+++|+++.++.|++
T Consensus 178 ~~~v~~~~~mgf~~~~-~~~al~~~~~~~~~~~~~l~~ 214 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQ-AKNALIKANWNETLALNTLLE 214 (216)
T ss_dssp --------------------------------------
T ss_pred hhHHHHHHHcCCCHHH-HHHHHHHcCCchHHHHHHHhc
Confidence 4567899999998754 347899999999999999885
No 115
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=34.47 E-value=1.4e+02 Score=29.23 Aligned_cols=44 Identities=11% Similarity=0.197 Sum_probs=35.1
Q ss_pred cEEEEEEeCC----eeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEE
Q 003172 4 TMVIKVKYGD----TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTL 53 (842)
Q Consensus 4 ~i~IKv~~gd----~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~l 53 (842)
.+.|||.+.+ .-||+.|+ . ++++..|-..||.+|....+.=..+
T Consensus 8 iy~lrV~L~~~~p~iWRri~Vp---~---~~TL~~LH~vIq~afgw~~~HL~~F 55 (188)
T 2i1s_A 8 VYHLKLSIKGITPQIWRRIQVP---E---NYTFLDLHKAIQAVMDWEDYHLHEF 55 (188)
T ss_dssp EEEEEEEETTCSSCEEEEEEEE---T---TCBHHHHHHHHHHHTTCCCCSCEEE
T ss_pred EEEEEEEECCCCCCeEEEEEEC---C---CCCHHHHHHHHHHHhCCCCCEeeEE
Confidence 4789999995 58999999 2 5899999999999999865533333
No 116
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=33.97 E-value=92 Score=26.50 Aligned_cols=60 Identities=20% Similarity=0.149 Sum_probs=40.7
Q ss_pred eeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCceEEE
Q 003172 16 RRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (842)
Q Consensus 16 RRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~LrI 84 (842)
+.|.+.+.. +-+...|..+|++..+++++ ...|-|. |- +.|.|+.-|.++=-+.-..|.+
T Consensus 21 ~~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~QrLi~~---Gk-~lL~D~~tL~~y~I~~gs~i~l 80 (84)
T 2kk8_A 21 SSFELEVDY----RDTLLVVKQKIERSQHIPVS-KQTLIVD---GI-VILREDLTVEQCQIVPTSDIQL 80 (84)
T ss_dssp CEEEEEECT----TSBHHHHHHHHHHHHTCCGG-GEEEEET---TE-ECCCSSSBHHHHTCCTTSCEEE
T ss_pred cEEEEEECC----CChHHHHHHHHHHHHCcChH-HEEEEEC---CE-EecCCcCCHHHcCCCCCCEEEE
Confidence 566777764 57899999999999999765 6667775 32 1267777788852233334444
No 117
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=33.64 E-value=60 Score=27.57 Aligned_cols=74 Identities=26% Similarity=0.302 Sum_probs=47.6
Q ss_pred EEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCceEEEE
Q 003172 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRID 85 (842)
Q Consensus 6 ~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~LrI~ 85 (842)
.|+|+.-+ -+.|.+.+.. +.+...|+.+|++.++++++ ...|-|. |- .|.|+..|.++=-+.-..|.+.
T Consensus 3 ~i~vk~~~-g~~~~~~v~~----~~TV~~LK~~i~~~~gip~~-~qrL~~~---G~--~L~d~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 3 QIFVKTLT-GKTITLEVEP----SDTIENVKAKIQDKEGIPPD-QQRLIFA---GK--QLEDGRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp EEEEEETT-CCEEEEECCT----TCBHHHHHHHHHHHHCCCGG-GEEEEET---TE--ECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCC-CCEEEEEECC----CCCHHHHHHHHHhhhCCChh-HEEEEEC---CE--ECCCCCcHHHcCCCCCCEEEEE
Confidence 45555432 2456666664 57899999999999999765 5677784 32 4677777777422334456666
Q ss_pred EEecC
Q 003172 86 VHLNN 90 (842)
Q Consensus 86 V~l~~ 90 (842)
+.+.+
T Consensus 72 ~r~~g 76 (96)
T 3k9o_B 72 LRLRG 76 (96)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 65544
No 118
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=32.83 E-value=89 Score=32.45 Aligned_cols=68 Identities=15% Similarity=0.064 Sum_probs=53.7
Q ss_pred ccEEEEEEeCC-eeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHH
Q 003172 3 STMVIKVKYGD-TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR 76 (842)
Q Consensus 3 ~~i~IKv~~gd-~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~ 76 (842)
+.+.+||.+-| +...|.+.- .-+...|-++|.+-++|....-|.|.|.|.+|...-|+.+.-+.+.+.
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~------~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~ 84 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEK------HAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVR 84 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCT------TCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC-
T ss_pred ceEEEEEEccCCCEEEEEECC------CCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcC
Confidence 34789999855 556666652 356788889999999999888899999999998899999888887544
No 119
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=31.66 E-value=29 Score=29.95 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCCCCCccEEEEecCCCCEEEE
Q 003172 35 LRAKIKSLFNFPHDSDLTLTYVDEDGDIVTL 65 (842)
Q Consensus 35 L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL 65 (842)
++.-|++.|.|..++.|.+++-|.||++|..
T Consensus 29 IPaeI~kaLgIk~gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 29 IPKDIAEALDIKPDDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp ECHHHHHHTTCCTTCCEEEEEEEETTEEEEE
T ss_pred CcHHHHHHhCCCCCCEEEEEEecCCCeEEEE
Confidence 4567899999999999999999999988753
No 120
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=31.32 E-value=48 Score=35.78 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhccccchhHHHHHHhccccc
Q 003172 732 TLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMVSSY 786 (842)
Q Consensus 732 ~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~~EwdplleEl~Emgf~d 786 (842)
..|+-|.+|||...++. +||.+|-+=|.+.+. +++.+|..+||..
T Consensus 48 ~~l~~L~d~Gfs~~~i~-~il~~~P~il~~~l~---------~~i~~L~~LGls~ 92 (335)
T 4fp9_B 48 RVMSSLLDMGFSNAHIN-ELLSVRRGASLQQLL---------DIISEFILLGLNP 92 (335)
T ss_dssp HHHHHHHHTTCCHHHHH-HHHHHCSSCCHHHHH---------HHHHHHHHTTCCH
T ss_pred HHHHHHHHCCCCHHHHH-HHHHhCcccchhHHH---------HHHHHHHHcCCCH
Confidence 34556777777766655 566666555555432 3445555555543
No 121
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=30.94 E-value=1.1e+02 Score=26.78 Aligned_cols=59 Identities=25% Similarity=0.384 Sum_probs=41.7
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a 74 (842)
.+.|+|+..+ +.|.+.+.. +.+...|+.+|+...+++++ ...|.|. |- .|.|+.-|.++
T Consensus 25 ~m~I~Vk~~g--~~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~qrLi~~---Gk--~L~D~~tL~~~ 83 (101)
T 2klc_A 25 IMKVTVKTPK--EKEEFAVPE----NSSVQQFKEEISKRFKSHTD-QLVLIFA---GK--ILKDQDTLSQH 83 (101)
T ss_dssp CEEEEEECSS--CEEEEEECS----CCCHHHHHHHHHHHHTCCGG-GEEEEET---TE--EECTTCCTGGG
T ss_pred eEEEEEEeCC--cEEEEEECC----CCCHHHHHHHHHHHHCcChh-hEEEEEC---CE--ECCCcCcHHHc
Confidence 3566666653 457777764 57899999999999999755 6677784 42 45666666664
No 122
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=30.82 E-value=57 Score=29.89 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=52.2
Q ss_pred ccEEEEEEeCCee---eeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH-HHcc
Q 003172 3 STMVIKVKYGDTL---RRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV-MRQR 78 (842)
Q Consensus 3 ~~i~IKv~~gd~l---RRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a-~~q~ 78 (842)
..|-+||.+.|.. ..+.+.+.. +.+...|.++|++.++|+++.. .|.|.. . .++|+..|.++ +++.
T Consensus 21 ~~i~l~v~v~d~~s~~~~i~l~V~p----s~TV~~LK~~I~~k~Gipp~~Q-Rli~gg----k-ll~D~~TL~~ygI~~~ 90 (105)
T 4dbg_A 21 QDIRLWVSVEDAQMHTVTIWLTVRP----DMTVASLKDMVFLDYGFPPVLQ-QWVIGQ----R-LARDQETLHSHGVRQN 90 (105)
T ss_dssp CCEEEEEEEEESSSCCEEEEEEECT----TCBHHHHHHHHHHHHCCCGGGE-EEEETT----E-EECTTCBTGGGTCCST
T ss_pred CcEEEEEEEEccCCCCceEEEEECC----cChHHHHHHHHHHHhCCCHHHE-EEeccC----e-EccCcCcHHHcCCCCC
Confidence 3577888888865 566666664 6899999999999999998766 355533 3 56677778774 4455
Q ss_pred CceEEEEE
Q 003172 79 LKFLRIDV 86 (842)
Q Consensus 79 l~~LrI~V 86 (842)
-..|.+.+
T Consensus 91 G~t~hL~l 98 (105)
T 4dbg_A 91 GDSAYLYL 98 (105)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEE
Confidence 55565544
No 123
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=30.74 E-value=21 Score=29.64 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=18.4
Q ss_pred ccCceecCCCCCCCc-cc-cceecCCCC
Q 003172 376 FHKGVRCDGCGVHPI-TG-PRFKSKVKD 401 (842)
Q Consensus 376 vH~GV~CDgC~~~PI-~G-~RYKCsvC~ 401 (842)
+.....||.|+ ..| .| .-|||..|.
T Consensus 16 ~~~~~~C~~Cg-~~i~~gkq~~kC~dC~ 42 (61)
T 4b6d_A 16 VIKPESCVPCG-KRIKFGKLSLKCRDCR 42 (61)
T ss_dssp CCSCEECTTTC-CEECTTCEEEEESSSS
T ss_pred ccCCccccccc-CEEEEeeEeeECCCCC
Confidence 44569999997 455 44 459999985
No 124
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=30.60 E-value=1.9e+02 Score=24.62 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=19.2
Q ss_pred CCCCCCEEEEEEEEecCCCCceEEEEEEEEC
Q 003172 541 GVPVEGEIDIAVDFTAPELPGRYISYWRMSS 571 (842)
Q Consensus 541 ~V~PGEevdVSV~L~AP~~pG~YiSyWRL~t 571 (842)
.+.||++..+ .|.+|.+||.| |=.|+
T Consensus 66 ~~~pG~~~~~--~f~~~~~~G~y---~y~C~ 91 (106)
T 2gim_A 66 LMSPGQSTST--TFPADAPAGEY---TFYCE 91 (106)
T ss_dssp CCSTTCEEEE--ECCTTCCSEEE---EEECT
T ss_pred eeCCCCEEEE--EEecCCCCceE---EEEeC
Confidence 4789998655 78888999986 44455
No 125
>1mby_A SAK, serine/threonine kinase; POLO domain, strand exchange, transferase; 2.00A {Mus musculus} SCOP: d.223.1.1
Probab=30.45 E-value=16 Score=33.03 Aligned_cols=39 Identities=23% Similarity=0.525 Sum_probs=31.1
Q ss_pred EEEEecCCCCEEEEcCChhHHHHHHccCceE-EEEEEecC
Q 003172 52 TLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL-RIDVHLNN 90 (842)
Q Consensus 52 ~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~L-rI~V~l~~ 90 (842)
.|+|++++|-...-.+++||-+++++||..| +|...|.+
T Consensus 43 ~ItYt~~~G~~t~y~~~d~LP~~vrekL~~lp~I~~~L~~ 82 (88)
T 1mby_A 43 SISYTSPDGQTTRYGENEKLPEYIKQKLQLLSSILLMFSN 82 (88)
T ss_dssp EEEEECTTSCEEEEETTSCCCHHHHHHHTTTCCEEEEECC
T ss_pred eeEEeCCCCceEEcCcCCCccHHHHHHHhhhHHHHHHHhc
Confidence 6899999998888888888999999888766 34555555
No 126
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=30.08 E-value=69 Score=26.99 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=33.0
Q ss_pred HHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhccccchhHHHHHHhcccccccch
Q 003172 733 LLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMVSSYVKTV 790 (842)
Q Consensus 733 ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~~EwdplleEl~Emgf~d~~~~ 790 (842)
+-.=|+++||.| =.++.++|+||.+ .|+...+ +.|+|||+......
T Consensus 10 V~~WL~~lgl~~---Y~~~F~~~~idg~----~Ll~Lt~-----~dL~~lGI~~~Ghr 55 (76)
T 2f3n_A 10 VGDWLESIHLGE---HRDRFEDHEIEGA----HLPALTK-----EDFVELGVTRVGHR 55 (76)
T ss_dssp HHHHHHHTTCGG---GHHHHHHTTCCGG----GGGGCCH-----HHHHHTTCCCHHHH
T ss_pred HHHHHHHCCCHH---HHHHHHHcCCCHH----HHccCCH-----HHHHHcCCCChhHH
Confidence 345778889986 3688999999997 3444443 57889999865443
No 127
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=29.79 E-value=33 Score=30.52 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=44.9
Q ss_pred EEEEEe-CCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCceEEE
Q 003172 6 VIKVKY-GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (842)
Q Consensus 6 ~IKv~~-gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~LrI 84 (842)
.|+|+. +| +.|.+.+.. +.+...|+.+|+..++++++. ..|-|. |- .|.|+..|.++=-+.-..|.+
T Consensus 3 ~I~Vk~~~g--~~~~l~v~~----~~TV~~LK~~I~~~~gip~~~-QrLi~~---Gk--~L~D~~tL~~~~i~~g~~i~l 70 (106)
T 3m62_B 3 SLTFKNFKK--EKVPLDLEP----SNTILETKTKLAQSISCEESQ-IKLIYS---GK--VLQDSKTVSECGLKDGDQVVF 70 (106)
T ss_dssp CEEEECTTC--CEEEECCCT----TSBHHHHHHHHHHTTTSCGGG-CEEEET---TE--ECCTTSBTTTTTCCTTCEEEE
T ss_pred EEEEEeCCC--CEEEEEECC----CCcHHHHHHHHHHHHCCChhh-EEEEEC---CE--ECCCcCCHHHcCCCCCCEEEE
Confidence 355554 34 457777664 578999999999999997664 567774 43 367777777752233334544
Q ss_pred EEE
Q 003172 85 DVH 87 (842)
Q Consensus 85 ~V~ 87 (842)
.+.
T Consensus 71 v~~ 73 (106)
T 3m62_B 71 MVS 73 (106)
T ss_dssp ECC
T ss_pred EEc
Confidence 443
No 128
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.43 E-value=1.2e+02 Score=27.29 Aligned_cols=68 Identities=15% Similarity=0.311 Sum_probs=47.2
Q ss_pred EEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH-HHccCceEE
Q 003172 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV-MRQRLKFLR 83 (842)
Q Consensus 5 i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a-~~q~l~~Lr 83 (842)
+++++++++. .|.+.+.. +-+...|+++|++..+++++..-.+-|. -|- |.|+..|.++ ++. -..|.
T Consensus 10 ~~~~vk~~Gk--~~~v~v~~----~~TV~~LK~~I~~~tgIpp~~QkLi~~~--~gk---L~D~~tLs~~~I~~-gstL~ 77 (100)
T 2dzm_A 10 LDFRVEYRDR--NVDVVLED----TCTVGEIKQILENELQIPVSKMLLKGWK--TGD---VEDSTVLKSLHLPK-NNSLY 77 (100)
T ss_dssp EEEEEECSSC--EEEEEEET----TSBHHHHHHHHHHHHCCCTTTCCEECCS--SSC---CCTTSBHHHHCCCS-EEEEE
T ss_pred EEEEEEeCCe--EEEEEECC----CCcHHHHHHHHHHHHCCChhHeEEEccC--CCC---CCCcCCHHHcCCCC-CCEEE
Confidence 6789999885 45566664 3578999999999999999977654332 244 5677788885 443 23444
Q ss_pred E
Q 003172 84 I 84 (842)
Q Consensus 84 I 84 (842)
+
T Consensus 78 l 78 (100)
T 2dzm_A 78 V 78 (100)
T ss_dssp E
T ss_pred E
Confidence 3
No 129
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=29.32 E-value=25 Score=30.54 Aligned_cols=33 Identities=18% Similarity=0.403 Sum_probs=24.2
Q ss_pred ccceecCCCC---Ccchhhhhhhc-CCCCcceEEecC
Q 003172 392 GPRFKSKVKD---DYDLCSICFAA-MGSEADYIRIDR 424 (842)
Q Consensus 392 G~RYKCsvC~---DyDLCs~C~a~-~~~~H~firI~~ 424 (842)
..-|+|..|. .+-||..||.. .|..|.|..+..
T Consensus 15 e~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~~~~s 51 (75)
T 3ny3_A 15 EPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTS 51 (75)
T ss_dssp CEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEEEEEC
T ss_pred CEEEECccCCCCCCeeEChHHCCCCCcCCceEEEEEc
Confidence 3558888884 35689999987 467899877644
No 130
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=29.26 E-value=56 Score=27.11 Aligned_cols=60 Identities=18% Similarity=0.360 Sum_probs=41.8
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a 74 (842)
.+.|+|+.-+ -+.|.+.+.. +.+...|+.+|+..++++++ ...|-|. |- .|.|+.-|.++
T Consensus 12 ~m~i~vk~~~-g~~~~~~v~~----~~tV~~lK~~i~~~~gip~~-~qrL~~~---G~--~L~d~~tL~~~ 71 (88)
T 3dbh_I 12 SMLIKVKTLT-GKEIEIDIEP----TDKVERIKERVEEKEGIPPQ-QQRLIYS---GK--QMNDEKTAADY 71 (88)
T ss_dssp CEEEEEECTT-SCEEEEEECT----TCBHHHHHHHHHHHHCCCGG-GCCEEET---TE--ECCTTSBGGGG
T ss_pred cEEEEEEcCC-CCEEEEEECC----CCCHHHHHHHHHHHHCcCHH-HEEEEEC---Ce--ECCCCCcHHHc
Confidence 3677777532 2456677664 57899999999999999865 5577784 32 46676667764
No 131
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A
Probab=28.90 E-value=45 Score=30.12 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=24.3
Q ss_pred EEEEEEEEecCCCCceEEEEEEEECCCCCcc
Q 003172 547 EIDIAVDFTAPELPGRYISYWRMSSPSGVKF 577 (842)
Q Consensus 547 evdVSV~L~AP~~pG~YiSyWRL~tpdG~~F 577 (842)
.-.+++.+. |-.+|.|.-.||....||..-
T Consensus 66 ~~~~~~~l~-~L~~G~YtV~WrvvS~DGH~~ 95 (104)
T 1lyq_A 66 KSMVIIPRE-PLPAGTYRVDWRAVSSDTHPI 95 (104)
T ss_dssp TEEEEEESS-CCCSEEEEEEEEECCTTSCCE
T ss_pred CcEEEEECC-CCCCceEEEEEEEEecCCCcc
Confidence 345667766 788999999999999999753
No 132
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=28.84 E-value=26 Score=30.16 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=17.4
Q ss_pred hhHhhhhccc--cchhHHHHHHhccccc
Q 003172 761 QSVDDLCGVS--EWDPILEELQEMVSSY 786 (842)
Q Consensus 761 qsvDdLcg~~--EwdplleEl~Emgf~d 786 (842)
+|+.+-|.+. ..|.|+++|++.||.-
T Consensus 50 ~TL~~aa~~~gid~d~l~~~L~~~g~~~ 77 (81)
T 2fi0_A 50 VSLKQGSKLAGTPMDKIVRTLEANGYEV 77 (81)
T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHTTCEE
T ss_pred CcHHHHHHHcCCCHHHHHHHHHHcCCEe
Confidence 4455555432 3477899999999964
No 133
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=28.72 E-value=26 Score=30.20 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=30.2
Q ss_pred cCCCCCCCccccceecCCCCCcchhhhhhhcCC-----CCcceEEecCCCC
Q 003172 382 CDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG-----SEADYIRIDRPVH 427 (842)
Q Consensus 382 CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~~~-----~~H~firI~~Pv~ 427 (842)
|-.|... .-+||.-|.+-=+|..||...| ..|..+++..|-.
T Consensus 11 C~ICneD----AtlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y~~~~k 57 (67)
T 2d8v_A 11 CCICNED----ATLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYHPRRP 57 (67)
T ss_dssp CTTTCSC----CCEEETTTTSEEECSSHHHHHTTTSSTTTCCEECCCCSSS
T ss_pred eEEeCCC----CeEEecCCCCceehHHHHHHHccchhhhccceeeccCCCC
Confidence 5556632 4499999987667999999854 4677777766653
No 134
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=28.48 E-value=51 Score=29.62 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=24.3
Q ss_pred EEEEEEEEecCCCCceEEEEEEEECCCCCcc
Q 003172 547 EIDIAVDFTAPELPGRYISYWRMSSPSGVKF 577 (842)
Q Consensus 547 evdVSV~L~AP~~pG~YiSyWRL~tpdG~~F 577 (842)
...+++.+. |-.+|.|.-.||....||..-
T Consensus 64 ~~~~~~~l~-~L~~G~YtV~WrvvS~DGH~~ 93 (102)
T 2c9r_A 64 KTMVITPAS-PLTAGTYKVDWRAVSSDTFPI 93 (102)
T ss_dssp TEEEEEESS-CCCSEEEEEEEEECCTTCCCE
T ss_pred CcEEEEECC-CCCCceEEEEEEEEecCCCcc
Confidence 446677764 788999999999999999753
No 135
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=27.81 E-value=37 Score=27.85 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=19.2
Q ss_pred CcccCceecCCCCCCCcccc---ceecCCCC
Q 003172 374 GMFHKGVRCDGCGVHPITGP---RFKSKVKD 401 (842)
Q Consensus 374 ~vvH~GV~CDgC~~~PI~G~---RYKCsvC~ 401 (842)
..++.-..||.|+ ..|.|. -|+|..|.
T Consensus 18 ~~~~~pt~C~~C~-~~l~Gl~~qg~~C~~C~ 47 (65)
T 2enz_A 18 YNYKSPTFCEHCG-TLLWGLARQGLKCDACG 47 (65)
T ss_dssp CCCCSCCBCSSSC-CBCCCSSSCSEEESSSC
T ss_pred EcCCCCcCchhcC-hhheecCCcccccCCCC
Confidence 3455668999998 678884 46777663
No 136
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.77 E-value=1.7e+02 Score=24.90 Aligned_cols=72 Identities=21% Similarity=0.345 Sum_probs=46.1
Q ss_pred EEEEEEeCC-eeeeEEeeecCCCCcccCHHHHHHHHHHHh--CCCCCCccEEEEecCCCCEEEEcCChhHHHHHH--ccC
Q 003172 5 MVIKVKYGD-TLRRFNARVDENEKLDLDIDGLRAKIKSLF--NFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR--QRL 79 (842)
Q Consensus 5 i~IKv~~gd-~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf--~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~--q~l 79 (842)
+.|+|+..+ ....|.+.+.. +-+...|..+|++.+ +++++ +..|-|. | -.|.|+..|.++.. +.-
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~----~~TV~~lK~~I~~~~~~~i~~~-~QrLi~~---G--k~L~D~~tL~~~~~~i~~~ 77 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDR----GWSVGHLKAHLSRVYPERPRPE-DQRLIYS---G--KLLLDHQCLRDLLPKQEKR 77 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCT----TSCHHHHHHHHHHHSTTCCCTT-TCEEEET---T--EECCSSSCHHHHSCSSSCS
T ss_pred EEEEEEeCCCCeEEEEEecCC----CCcHHHHHHHHHHHhcCCCChH-HeEEEEC---C--EECcCcCCHHHHhcCCCCC
Confidence 556665532 23356666543 578999999999999 88765 5566675 4 25677878888732 333
Q ss_pred ceEEEEE
Q 003172 80 KFLRIDV 86 (842)
Q Consensus 80 ~~LrI~V 86 (842)
..|.+.+
T Consensus 78 ~~i~lv~ 84 (93)
T 1wgd_A 78 HVLHLVC 84 (93)
T ss_dssp EEEEEEC
T ss_pred CEEEEEe
Confidence 3444433
No 137
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=27.39 E-value=1.2e+02 Score=28.06 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=45.4
Q ss_pred ccCCCCcEEEEEEEEcCCCCCCCCCcEEEE-ecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCC-CCceEE
Q 003172 492 MMAPSTPFTKIWRMRNTGNLAWPRGSQLVW-IGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPE-LPGRYI 564 (842)
Q Consensus 492 ~V~PGt~FtKtWrLrNsGt~~WP~Gt~Lvf-vgGD~m~~~~sv~l~IPv~~V~PGEevdVSV~L~AP~-~pG~Yi 564 (842)
.+.+|+..+=.=.|+|.|+.. ...+.+.| ++|...+ ..++..+.+|++..|++... |. ..|.|.
T Consensus 14 ~~~~~~~~ti~atVkN~G~~~-a~~~~V~ly~~g~~v~-------t~~v~~LaaG~s~tv~~~w~-~~~~~G~yt 79 (114)
T 2l0d_A 14 TVVPNTVNTMTATIENQGNKD-STSFNVSLLVDGIVVD-------TQTVTSLESENSTNVDFHWT-LDGTANSYT 79 (114)
T ss_dssp EECTTSEEEEEEEEEECSSSC-BCCEEEEEEETTEEEE-------EEEESCBCBTCEEEEEEEEE-CCCSCSEEE
T ss_pred CcCCCCeEEEEEEEEECCCCC-CCCEEEEEEECCEEEc-------ceecccccCCCEEEEEEEEe-ecCcCceEE
Confidence 366788888888999999987 35677765 4554222 12345789999999988877 44 478875
No 138
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=26.37 E-value=1e+02 Score=24.41 Aligned_cols=49 Identities=27% Similarity=0.438 Sum_probs=35.0
Q ss_pred eeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH
Q 003172 16 RRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 16 RRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a 74 (842)
+.|.+.+.. +.+...|+.+|++.++++++ ...|.|. |- .|.|+.-|.++
T Consensus 11 ~~~~i~v~~----~~tv~~lK~~i~~~~~i~~~-~q~L~~~---g~--~L~d~~tL~~~ 59 (76)
T 3a9j_A 11 KTITLEVEP----SDTIENVKAKIQDKEGIPPD-QQRLIFA---GK--QLEDGRTLSDY 59 (76)
T ss_dssp CEEEEECCT----TCBHHHHHHHHHHHHCCCGG-GEEEEET---TE--ECCTTCBTGGG
T ss_pred CEEEEEECC----CCcHHHHHHHHHHHHCcCHH-HeEEEEC---Ce--ECCCCCcHHHc
Confidence 345666653 57899999999999999754 7788884 32 35666666664
No 139
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=26.36 E-value=48 Score=35.09 Aligned_cols=48 Identities=17% Similarity=-0.015 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhccccchhHHHHHHhcccccccc
Q 003172 732 TLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMVSSYVKT 789 (842)
Q Consensus 732 ~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~~EwdplleEl~Emgf~d~~~ 789 (842)
..+.-|..+||.. +.+++.+.. | .++....+|++|+-|+++||.+++.
T Consensus 21 ~~v~~L~s~Gl~~----~~~~~~~p~-----l-~~~s~~~~~~vl~fL~~~G~s~~~i 68 (343)
T 3mva_O 21 DLLKNLLTMGVDI----DMARKRQPG-----V-FHRMITNEQDLKMFLLSKGASKEVI 68 (343)
T ss_dssp CHHHHHHHHTCCH----HHHHHHCGG-----G-GGCSCCCHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHcCCCH----HHHHHhCch-----h-hccCcccHHHHHHHHHHcCCCHHHH
Confidence 4567889999994 346666543 2 5778889999999999999988653
No 140
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=26.08 E-value=30 Score=30.66 Aligned_cols=36 Identities=11% Similarity=0.269 Sum_probs=25.8
Q ss_pred CcccCceecCCCCCCCcccc-----ceecCCCCCcchhhhhhh
Q 003172 374 GMFHKGVRCDGCGVHPITGP-----RFKSKVKDDYDLCSICFA 411 (842)
Q Consensus 374 ~vvH~GV~CDgC~~~PI~G~-----RYKCsvC~DyDLCs~C~a 411 (842)
..+|.-..||.|+ ..|.|. -|+|..|. |..=..|..
T Consensus 30 ~~~~~PT~Cd~C~-~~lWGl~kqp~G~~C~~C~-~~~HkrC~~ 70 (84)
T 2row_A 30 TLYHFPTNCEACM-KPLWHMFKPPPALECRRCH-IKCHKDHMD 70 (84)
T ss_dssp ECCSSCEECSSSS-SEECCSSSCCCEEEESSSC-CEEEHHHHH
T ss_pred EcCCCCcchhhcC-HhhhccccCCCCCEecCCC-CccchhHhC
Confidence 4578889999998 688885 68899884 433333554
No 141
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=25.77 E-value=36 Score=31.51 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCccchh-------hHHHHHhccCchhhhHhhhhccccchhHHHHHHh
Q 003172 731 QTLLRELEEMGFKQVDL-------NKEILRMNEYDLEQSVDDLCGVSEWDPILEELQE 781 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dl-------nkEiLr~n~YdLeqsvDdLcg~~EwdplleEl~E 781 (842)
..+..-|+.+||.--++ ..+++....-+..+.+|++.|..+|+...+|+++
T Consensus 124 ~~~~~~l~~~~l~~~~~~~~~qg~~~~l~~~~~~~r~~~ld~~~g~~~~~~~~~~~~~ 181 (182)
T 3kta_A 124 SEILDILTAAMISPDGYNIVLQGDITKFIKMSPLERRLLIDDISGIAEYDSKKEKALE 181 (182)
T ss_dssp HHHHHHHHHTTCCTTCTTEECTTCTTHHHHSCHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHcCCCCCCCEEEEcccHHHHHhCCHHHHHHHHHHHHChHHHHHHHHHHhc
Confidence 34456677788866555 3467777888889999999999999988887764
No 142
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.65 E-value=23 Score=30.19 Aligned_cols=44 Identities=23% Similarity=0.191 Sum_probs=31.3
Q ss_pred HHHHHcCCccchhhHHHHHhccCchhhhH--hhhhccccchhHHHHHHhcccccccc
Q 003172 735 RELEEMGFKQVDLNKEILRMNEYDLEQSV--DDLCGVSEWDPILEELQEMVSSYVKT 789 (842)
Q Consensus 735 ~eLe~MGFkq~dlnkEiLr~n~YdLeqsv--DdLcg~~EwdplleEl~Emgf~d~~~ 789 (842)
.=|+.+|+.|- .+.+.+|+||..+.| -+|+ .++|+|||+.....
T Consensus 17 ~WL~~lgL~~Y---~~~F~~~~i~~~~~l~~~~lt--------~~dL~~lGI~~~gh 62 (80)
T 2eam_A 17 QWLESIGLPQY---ENHLMANGFDNVQFMGSNVME--------DQDLLEIGILNSGH 62 (80)
T ss_dssp HHHHHHTCGGG---HHHHHHTTCCCTTTSSSSSSC--------TTHHHHSSCCCHHH
T ss_pred HHHHHCCCHHH---HHHHHHcCCChHHHHhhccCC--------HHHHHHCCCCCHHH
Confidence 46777798886 788999999876554 2333 23689999986543
No 143
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.25 E-value=1.6e+02 Score=25.97 Aligned_cols=75 Identities=23% Similarity=0.221 Sum_probs=46.4
Q ss_pred EEEEEEeCCe--eeeEEeeecC----CCCcc-cCHHHHHHHHHHHh--CCCCCCccEEEEecCCCCEEEEcCChhHHHHH
Q 003172 5 MVIKVKYGDT--LRRFNARVDE----NEKLD-LDIDGLRAKIKSLF--NFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (842)
Q Consensus 5 i~IKv~~gd~--lRRf~~~l~~----n~~~d-l~~~~L~~ki~~lf--~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~ 75 (842)
+.|+|+..+. .+.|.+.+.. +=..+ .+...|+.+|+... +++++.-..|-|. |- .|.|+.-|.++-
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~---Gk--~L~D~~tL~~y~ 87 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC---GR--KLKDDQTLDFYG 87 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET---TE--ECCTTCBHHHHT
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC---Ce--ECCCCCcHHHcC
Confidence 5566665543 3677777552 01122 67999999999999 9986642566675 32 467777788752
Q ss_pred HccCceEEE
Q 003172 76 RQRLKFLRI 84 (842)
Q Consensus 76 ~q~l~~LrI 84 (842)
-+.-..|.+
T Consensus 88 i~~g~~i~l 96 (107)
T 1x1m_A 88 IQPGSTVHV 96 (107)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 233334444
No 144
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=25.09 E-value=2.3e+02 Score=26.65 Aligned_cols=64 Identities=16% Similarity=0.304 Sum_probs=41.4
Q ss_pred CcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEE--EEEecCCCCceEEEEEEEECCCC
Q 003172 497 TPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIA--VDFTAPELPGRYISYWRMSSPSG 574 (842)
Q Consensus 497 t~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGEevdVS--V~L~AP~~pG~YiSyWRL~tpdG 574 (842)
+--.+.|+|.+.- | .+.-|.|+-. +. +.| -+.|||+..-+ ..|.+| .|.-.+++.|.+++|
T Consensus 46 QL~sRhW~Itd~~------g-~~~eV~G~GV--VG----~qP--~L~PGe~f~YtSg~~L~tp--~G~M~G~y~m~~~~G 108 (127)
T 2f1e_A 46 RLVARHWQITDGN------G-RTEQVDGEGV--VG----EQP--WLRPGEAFHYTSGVLLETE--QGQMQGHYDMVADDG 108 (127)
T ss_dssp EEEEEEEEEEETT------S-CEEEEEESSB--TT----BCC--EECTTCEEEEEEEEEESSS--CEEEEEEEEEEETTC
T ss_pred EEEeceEEEEeCC------C-CEEEEECCCe--ec----CCC--cCCCCCceEEeCCcCcCCC--cEEEEEEEEEEECCC
Confidence 5566778887631 1 2445666532 11 123 37899987765 556666 699999999999887
Q ss_pred Ccc
Q 003172 575 VKF 577 (842)
Q Consensus 575 ~~F 577 (842)
..|
T Consensus 109 ~~F 111 (127)
T 2f1e_A 109 TEF 111 (127)
T ss_dssp CEE
T ss_pred CEE
Confidence 644
No 145
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=24.97 E-value=93 Score=26.38 Aligned_cols=60 Identities=27% Similarity=0.338 Sum_probs=41.4
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a 74 (842)
.+.|+|+.-+ -+.|.+.+.. +.+...|+.+|++.++++++ ...|-|. |- .|.|+..|.++
T Consensus 17 ~m~i~Vk~~~-g~~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~qrL~~~---Gk--~L~D~~tL~~~ 76 (91)
T 3v6c_B 17 SMQIFVNTLT-GTHITLEVEP----SDTIENVKAKIQDKEGIPPD-QQRLIFA---GK--QLEDGRTLSDY 76 (91)
T ss_dssp SEEEEEECTT-SCEEEEEECT----TCBHHHHHHHHHHHHCCCGG-GCEEEET---TE--ECCTTCBTGGG
T ss_pred eEEEEEEeCC-CCEEEEEECC----CCCHHHHHHHHHhhhCCChh-hEEEEEC---Ce--ECCCcCcHHHC
Confidence 3566777432 2456677664 57899999999999999765 5677784 32 36777667664
No 146
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=24.95 E-value=2.7e+02 Score=30.88 Aligned_cols=47 Identities=19% Similarity=0.329 Sum_probs=38.3
Q ss_pred CCCCCCEEEEEEEEecCCCCceEEEEEEEECCC-CCccCCeEEEEEEEc
Q 003172 541 GVPVEGEIDIAVDFTAPELPGRYISYWRMSSPS-GVKFGQRVWVLIQVD 588 (842)
Q Consensus 541 ~V~PGEevdVSV~L~AP~~pG~YiSyWRL~tpd-G~~FGdrLWV~I~V~ 588 (842)
.+..|.+.++.|.|+| .+||+|--+=.|.-.+ |-.-|.--|+.|+=.
T Consensus 83 ~le~G~~Y~fki~lkA-R~PG~~HVH~~lNV~~~GPiiGPG~~v~I~G~ 130 (382)
T 1yew_A 83 RLEIGKTYDFRVVLKA-RRPGDWHVHTMMNVQGGGPIIGPGKWITVEGS 130 (382)
T ss_dssp CCCTTCEEEEEEEEEE-CSCEEEEEEEEEEESSSCBCCCCEEEEEEESC
T ss_pred EecCCCeEeEEEEEec-ccCccccceeeEeecCCCCCcCCceEEEEecc
Confidence 3678999999999999 8999998777776554 445899999998844
No 147
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.70 E-value=2e+02 Score=23.12 Aligned_cols=60 Identities=27% Similarity=0.352 Sum_probs=40.7
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a 74 (842)
.+.|+|+.-+. +.|.+.+.. +.+...|+.+|++.++++++ ...|.|. |- .|.|+.-|.++
T Consensus 7 ~m~i~vk~~~g-~~~~~~v~~----~~tV~~LK~~i~~~~~i~~~-~qrL~~~---gk--~L~d~~tL~~~ 66 (81)
T 2dzi_A 7 GMQLTVKALQG-RECSLQVPE----DELVSTLKQLVSEKLNVPVR-QQRLLFK---GK--ALADGKRLSDY 66 (81)
T ss_dssp SEEEEEEETTS-CEEEEEECS----SCBHHHHHHHHHHHTCCCTT-TCEEEET---TE--ECCTTSBGGGG
T ss_pred cEEEEEEeCCC-CEEEEEECC----CCcHHHHHHHHHHHHCcCHH-HEEEEEC---Ce--ECCCCCcHHHc
Confidence 35666664221 566777664 57899999999999999765 6677784 43 35666556653
No 148
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}
Probab=24.36 E-value=50 Score=29.67 Aligned_cols=47 Identities=21% Similarity=0.177 Sum_probs=34.6
Q ss_pred HHHHHcCCccchhhHHHHHhccCchhhhH--hhhhccccchhHHHHHHhcccccccchhh
Q 003172 735 RELEEMGFKQVDLNKEILRMNEYDLEQSV--DDLCGVSEWDPILEELQEMVSSYVKTVMK 792 (842)
Q Consensus 735 ~eLe~MGFkq~dlnkEiLr~n~YdLeqsv--DdLcg~~EwdplleEl~Emgf~d~~~~~~ 792 (842)
.=|++.|+.|- ++.+.+|+|+..+-| -+|+ .+.|+|||+.......|
T Consensus 27 ~WL~~igL~qY---~~~F~~~gid~~~~l~~~~lt--------~~DL~~lGI~~~GhRkk 75 (103)
T 2ke7_A 27 QWLESIGLPQY---ENHLMANGFDNVQFMGSNVME--------DQDLLEIGILNSGHRQR 75 (103)
T ss_dssp HHHHHTTCTTC---HHHHHHTTCCCHHHHHTTCCC--------HHHHHHHTCCCHHHHHH
T ss_pred HHHHHCCCHHH---HHHHHHcCCCcHHHHhcccCC--------HHHHhHCCCCCHHHHHH
Confidence 46788899887 788999999987665 3444 46799999986654433
No 149
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.14 E-value=2.3e+02 Score=25.61 Aligned_cols=75 Identities=15% Similarity=0.023 Sum_probs=49.6
Q ss_pred EEEEEEeCCe---eeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCce
Q 003172 5 MVIKVKYGDT---LRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKF 81 (842)
Q Consensus 5 i~IKv~~gd~---lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~ 81 (842)
.+|+|+.-+. -++|.+.+.. +-+...|..+|++-++++++..-.| |. |- .|.|+.-|.++=-+.-.+
T Consensus 16 ati~V~~~~~~~~~~~~~lev~~----~~TV~~lK~kI~~k~gip~~qQrLI-~~---GK--iL~D~~TL~~y~I~~gst 85 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRKNLLETRL----HITGRELRSKIAETFGLQENYIKIV-IN---KK--QLQLGKTLEEQGVAHNVK 85 (100)
T ss_dssp EEEEEECCTTTCCSSSEEEEEES----SSBHHHHHHHHHHHTTCCSTTCEEE-ET---TE--ECCTTSBHHHHTCCSSEE
T ss_pred EEEEEEecCCCCCCcEEEEEeCC----cCHHHHHHHHHHHHHCcCHHHeEEE-eC---Ce--ECCCCCcHHHcCCCCCCE
Confidence 3455555441 3788888774 5789999999999999987755444 76 43 457777788862234445
Q ss_pred EEEEEEecC
Q 003172 82 LRIDVHLNN 90 (842)
Q Consensus 82 LrI~V~l~~ 90 (842)
| +.+.+..
T Consensus 86 i-~vl~lrg 93 (100)
T 1wju_A 86 A-MVLELKQ 93 (100)
T ss_dssp E-EEECCCC
T ss_pred E-EEEEECC
Confidence 5 4444444
No 150
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=23.93 E-value=2.1e+02 Score=25.19 Aligned_cols=77 Identities=19% Similarity=0.380 Sum_probs=48.0
Q ss_pred CcccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChh-----HHHH-
Q 003172 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDD-----LCDV- 74 (842)
Q Consensus 1 m~~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~D-----L~~a- 74 (842)
|.-+|+||++-++.--.+.+.+....+++-.+..|...+++.= ..++. |||..++| |...
T Consensus 4 mkvditikiqrdgqeieidirvstgkeleralqelekalarag----arnvq----------itisaendeqakelleli 69 (96)
T 2jvf_A 4 MKVDITIKIQRDGQEIEIDIRVSTGKELERALQELEKALARAG----ARNVQ----------ITISAENDEQAKELLELI 69 (96)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCSSSHHHHHHHHHHHHHHHHT----CSEEE----------EEEECSSHHHHHHHHHHH
T ss_pred eEEEEEEEEeeCCeEEEEEEEEcccHHHHHHHHHHHHHHHhcc----ccceE----------EEEEecChHHHHHHHHHH
Confidence 6778999999999877777777754334444444444444443 23444 45555565 4432
Q ss_pred --HHccCceEEEEEEecCC
Q 003172 75 --MRQRLKFLRIDVHLNND 91 (842)
Q Consensus 75 --~~q~l~~LrI~V~l~~~ 91 (842)
+-|+|---.|+|.+|+.
T Consensus 70 arllqklgykdinvrvngt 88 (96)
T 2jvf_A 70 ARLLQKLGYKDINVRVNGT 88 (96)
T ss_dssp HHHHHHHTCSEEEEEEETT
T ss_pred HHHHHHhCCCceEEEEcCE
Confidence 22677777889988873
No 151
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=23.65 E-value=33 Score=37.60 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
+..+..|.+|||-. ++-.+.|+..+.|.+++++-|+.
T Consensus 326 ~eaI~rL~~mGF~~-~~a~~al~a~~~n~e~A~~~L~~ 362 (368)
T 1oqy_A 326 KEAIERLKALGFPE-SLVIQAYFACEKNENLAANFLLS 362 (368)
T ss_dssp HHHHHHHHHHTCCS-HHHHHHTSSSSSCSSHHHHHHHH
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHcCCCHHHHHHHHhh
Confidence 44457899999985 55566999999999999998874
No 152
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=23.21 E-value=37 Score=38.53 Aligned_cols=38 Identities=13% Similarity=0.350 Sum_probs=29.4
Q ss_pred CcccCceecCCCCCCCccc---cceecCCCCCcchhhhhhhcC
Q 003172 374 GMFHKGVRCDGCGVHPITG---PRFKSKVKDDYDLCSICFAAM 413 (842)
Q Consensus 374 ~vvH~GV~CDgC~~~PI~G---~RYKCsvC~DyDLCs~C~a~~ 413 (842)
..++.-..|+.|+ ..+.| -+|+|..|. +..|..|....
T Consensus 524 ~~~~~~t~C~~C~-~~l~gl~~qg~~C~~C~-~~vHk~C~~~v 564 (587)
T 3ky9_A 524 FSFEETTSCKACQ-MLLRGTFYQGYRCHRCR-ASAHKECLGRV 564 (587)
T ss_dssp ECCSSCCBCTTTC-SBCCSSSCCEEEETTTC-CEECSGGGGGS
T ss_pred EeCCCCccccccc-ccccccccCCcCCCCCC-CccchhhhhcC
Confidence 3455668999998 45656 579999996 88899998763
No 153
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=23.20 E-value=1.3e+02 Score=31.03 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=50.8
Q ss_pred ccEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHH
Q 003172 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (842)
Q Consensus 3 ~~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~ 73 (842)
..+.+||.+-|....|.+. . .-+...|-++|.+-++|....-|.|.|. .+|...-|+.+.-|.+
T Consensus 21 ~~~~~~V~lldg~~~~~v~--~----~t~~~el~~~v~~~l~L~e~~~FgL~~~-~~~~~~wL~~~~~i~~ 84 (314)
T 1h4r_A 21 KTFTVRIVTMDAEMEFNCE--M----KWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKVLD 84 (314)
T ss_dssp CEEEEEEECSSCEEEEEEE--T----TCBHHHHHHHHHHHHTCCCGGGEEEEEE-ETTEEEECCTTSBGGG
T ss_pred CeeEEEEEeCCceEEEEeC--C----CCcHHHHHHHHHHHhCCCCCccceEEEE-eCCcCeeCCCccCHHH
Confidence 4688999998875445554 2 3578888899999999999889999998 7788888888777766
No 154
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=22.73 E-value=1e+02 Score=26.61 Aligned_cols=60 Identities=28% Similarity=0.363 Sum_probs=40.7
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a 74 (842)
.+.|+|+.-+ -+.|.+.+.. +.+...|+.+|++.++++++ ...|-|. |- .|.|+.-|.++
T Consensus 22 ~m~I~Vk~~~-g~~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~qrLi~~---Gk--~L~D~~tL~~~ 81 (98)
T 4hcn_B 22 PMQIFVKTLT-GKTITLEVES----SDTIDNVKSKIQDKEGIPPD-QQRLIFA---GK--QLEDGRTLSDY 81 (98)
T ss_dssp CCEEEEEETT-CCEEEEECCT----TCBHHHHHHHHHHHHCCCGG-GCEEEET---TE--ECCTTCBSGGG
T ss_pred eEEEEEEeCC-CCEEEEEECC----CCcHHHHHHHHHHHhCCChh-HEEEEEC---CE--ECCCCCcHHHC
Confidence 3566676432 2456677664 57899999999999999866 4567784 32 36666667664
No 155
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=22.46 E-value=83 Score=33.90 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhccccchhHHHHHHhcccccccc
Q 003172 732 TLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMVSSYVKT 789 (842)
Q Consensus 732 ~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~~EwdplleEl~Emgf~d~~~ 789 (842)
.++..|...||..-++-| ||+++-|=|.-+++.| ++-|+-|+++||...+.
T Consensus 80 ~~i~~L~~LGls~e~V~k-iL~k~P~lL~~s~e~L------~~~l~fL~~lGl~~~~i 130 (335)
T 4fp9_B 80 DIISEFILLGLNPEPVCV-VLKKSPQLLKLPIMQM------RKRSSYLQKLGLGEGKL 130 (335)
T ss_dssp HHHHHHHHTTCCHHHHHH-HHHHCGGGGGSCHHHH------HHHHHHHHHTTCTTTTH
T ss_pred HHHHHHHHcCCCHHHHHH-HHHhChhhccCCHHHH------HHHHHHHHHcCCCHHHH
Confidence 467899999999887776 8999999999999876 67888899999987654
No 156
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=22.31 E-value=47 Score=35.19 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhccccchhHHHHHHhccccccc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMVSSYVK 788 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~~EwdplleEl~Emgf~d~~ 788 (842)
++.|.-|.++||...|+.+ |++++-.=|..+++ ...|.++.|+++|+.+.+
T Consensus 52 ~~vl~fL~~~G~s~~~i~~-iv~~~P~lL~~~~~------~l~p~l~fL~~lG~s~~~ 102 (343)
T 3mva_O 52 QDLKMFLLSKGASKEVIAS-IISRYPRAITRTPE------NLSKRWDLWRKIVTSDLE 102 (343)
T ss_dssp HHHHHHHHHTTCCHHHHHH-HHHHCGGGGGCCHH------HHHHHHHHHTTTSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHH-HHHhCcHHHhCCHH------HHHHHHHHHHHcCCCHHH
Confidence 4677888999999998876 55555433322222 344555666666665544
No 157
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=22.30 E-value=68 Score=31.91 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhc
Q 003172 730 EQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCG 768 (842)
Q Consensus 730 e~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg 768 (842)
|+.-++.|.+||| -.++..+.|...+.|.+....-|+.
T Consensus 130 e~eaI~rL~~mGF-~r~~viqA~~ac~knee~Aan~L~~ 167 (171)
T 2qsf_X 130 DDQAISRLCELGF-ERDLVIQVYFACDKNEEAAANILFS 167 (171)
T ss_dssp HHHHHHHHHTTTC-CHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3444689999999 5677888999999999999998874
No 158
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=22.29 E-value=45 Score=28.55 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=24.6
Q ss_pred ceecCCCCCCCccccceecCCCCCcchhhhhhhc-C
Q 003172 379 GVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA-M 413 (842)
Q Consensus 379 GV~CDgC~~~PI~G~RYKCsvC~DyDLCs~C~a~-~ 413 (842)
.+.||.|...+-.-.--.|..|..+ ||+.|... |
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s-~C~~hl~~~H 64 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKATH 64 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEE-ECHHHHHHHS
T ss_pred CccCCcCCCCCCCCCeeEccCccch-hhhhhhHhhc
Confidence 4789999743323344569999855 99999985 5
No 159
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=22.21 E-value=49 Score=27.44 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=30.9
Q ss_pred HHHHHcCCccchhhHHHHHhccCchhhhHhhhhccccchhHHHHHHhcccccccc
Q 003172 735 RELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMVSSYVKT 789 (842)
Q Consensus 735 ~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~~EwdplleEl~Emgf~d~~~ 789 (842)
.=|+..||.|. .+.+++|++|-+ .|+...+ +.|+|||+.....
T Consensus 14 ~WL~~~gl~~y---~~~F~~~~i~g~----~Ll~l~~-----~dL~~lGI~~~g~ 56 (74)
T 2gle_A 14 HWLVGLSLDQY---VSEFSAQNISGE----QLLQLDG-----NKLKALGMTSSQD 56 (74)
T ss_dssp HHHHHTTTHHH---HHHHTTTTCCHH----HHHTCCH-----HHHHTTTCCCHHH
T ss_pred HHHHHCCCHHH---HHHHHHcCCCHH----HHhhCCH-----HHHHHcCCCCHHH
Confidence 55677788764 689999999983 4555544 4588999975443
No 160
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=22.18 E-value=66 Score=27.52 Aligned_cols=44 Identities=9% Similarity=0.178 Sum_probs=32.5
Q ss_pred HHHHHcCCccchhhHHHHHhccCc-hhhhHhhhhccccchhHHHHHHhcccccccch
Q 003172 735 RELEEMGFKQVDLNKEILRMNEYD-LEQSVDDLCGVSEWDPILEELQEMVSSYVKTV 790 (842)
Q Consensus 735 ~eLe~MGFkq~dlnkEiLr~n~Yd-LeqsvDdLcg~~EwdplleEl~Emgf~d~~~~ 790 (842)
.=|++.|+.|- ++.+.+|+|| ++. +-+|+ .++|+|||+......
T Consensus 12 ~WL~~lgL~~Y---~~~F~~~~~d~~~~-l~~lt--------~~DL~~lGI~~~Ghr 56 (81)
T 1ucv_A 12 DWLDSIRMGRY---RDHFAAGGYSSLGM-VLRMN--------AQDVRALGITLMGHQ 56 (81)
T ss_dssp HHHHHTTCGGG---HHHHHHTTCCBHHH-HTTCC--------HHHHHHHTCCCHHHH
T ss_pred HHHHHCCCHHH---HHHHHHcCCChHHH-HHHcC--------HHHHHhCCCCChhHH
Confidence 47888999887 8899999999 654 22333 467899999865443
No 161
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=22.03 E-value=2.5e+02 Score=26.45 Aligned_cols=64 Identities=19% Similarity=0.363 Sum_probs=40.6
Q ss_pred CcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEE--EEEecCCCCceEEEEEEEECCCC
Q 003172 497 TPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIA--VDFTAPELPGRYISYWRMSSPSG 574 (842)
Q Consensus 497 t~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGEevdVS--V~L~AP~~pG~YiSyWRL~tpdG 574 (842)
+--.+.|+|.+.- | .+..|.|+-. +. +.| -+.|||+..-+ ..|.+| .|.-.+++.|.+.+|
T Consensus 45 QL~sRhW~Itd~~------g-~~~eV~G~GV--VG----~qP--~L~PGe~f~YtSg~~L~tp--~G~M~G~y~m~~~~G 107 (126)
T 1xvs_A 45 QLMSRRWLITDAD------G-KQTVVEGDGV--VG----EQP--RIKANDEYTYSSGTALDTP--VGVMQGQYLMIDEQG 107 (126)
T ss_dssp EEEEEEEEEEETT------C-CEEEEEEESB--TT----BCC--EECTTCEEEEEEEEEESSS--EEEEEEEEEEECTTS
T ss_pred EEEecEEEEEeCC------C-CEEEEECCce--Ec----CCC--cCCCCCceEEeCCcCcCCC--cEEEEEEEEEEECCC
Confidence 4555677777521 1 2345555421 11 122 37899987765 556666 699999999999888
Q ss_pred Ccc
Q 003172 575 VKF 577 (842)
Q Consensus 575 ~~F 577 (842)
..|
T Consensus 108 ~~F 110 (126)
T 1xvs_A 108 ESF 110 (126)
T ss_dssp CEE
T ss_pred CEE
Confidence 644
No 162
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=21.86 E-value=60 Score=39.03 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhcc--------------------------ccchhHHHHHHhcc
Q 003172 730 EQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGV--------------------------SEWDPILEELQEMV 783 (842)
Q Consensus 730 e~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~--------------------------~EwdplleEl~Emg 783 (842)
.+.+|..|.+|||...---|-+...+|-|.|.+.+-|-.- ..=...++.|.+||
T Consensus 652 d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~mG 731 (854)
T 3ihp_A 652 DESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSMG 731 (854)
T ss_dssp -CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCHHHHHHHHTTT
T ss_pred CHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccccccccCCCCHHHHHHHHHcC
Confidence 3567899999999998888888888888888877644211 11234678899999
Q ss_pred ccc
Q 003172 784 SSY 786 (842)
Q Consensus 784 f~d 786 (842)
|..
T Consensus 732 f~~ 734 (854)
T 3ihp_A 732 FSR 734 (854)
T ss_dssp CCH
T ss_pred CCH
Confidence 983
No 163
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=21.81 E-value=1e+02 Score=27.43 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=46.7
Q ss_pred cEEEEEEeCC--eeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHHHHccCce
Q 003172 4 TMVIKVKYGD--TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKF 81 (842)
Q Consensus 4 ~i~IKv~~gd--~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a~~q~l~~ 81 (842)
.+.|+|+.-. .-+.|.+.+.. ++.+...|..+|+..++++++ ...|.|. |- .|.|+..|.++=-+.-..
T Consensus 27 ~i~i~Vk~~~~~~g~~~~l~v~~---l~~TV~~LK~~I~~~~gip~~-~QrL~~~---Gk--~L~D~~tL~~y~I~~g~~ 97 (111)
T 1we6_A 27 PATIRVSKPNENDGQFMEITVQS---LSENVGSLKEKIAGEIQIPAN-KQKLSGK---AG--FLKDNMSLAHYNVGAGEI 97 (111)
T ss_dssp CEEEEECCTTCSSSCCEEEEESC---SSSBHHHHHHHHHHHTTCCTT-TSEEECS---SS--BCCTTSBTTTTTCSSSCE
T ss_pred cEEEEEEecccCCCcEEEEEecC---CCCcHHHHHHHHHHHHCCCHH-HeEEEEC---CE--ECCCCCcHHHCCCCCCCE
Confidence 4677777642 23566677662 247899999999999999866 5666774 32 456666676642123334
Q ss_pred EEEEE
Q 003172 82 LRIDV 86 (842)
Q Consensus 82 LrI~V 86 (842)
|.+.+
T Consensus 98 l~l~~ 102 (111)
T 1we6_A 98 LTLSL 102 (111)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 44443
No 164
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=21.73 E-value=1.1e+02 Score=26.29 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=30.7
Q ss_pred CcccCCCCcEEEEEEEEcCCCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEE
Q 003172 490 GTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYI 564 (842)
Q Consensus 490 GT~V~PGt~FtKtWrLrNsGt~~WP~Gt~LvfvgGD~m~~~~sv~l~IPv~~V~PGEevdVSV~L~AP~~pG~Yi 564 (842)
--.|++|+.. +|++.|.|... .+ +.. .+ +. . +. .+.||++..+++. |.+||.|.
T Consensus 29 ~i~v~~G~tV--~~~~~n~d~~~--H~--~~~-~~--~~----~--~~---~~~pg~~~~~~~t---~~~~G~Y~ 82 (100)
T 4hci_A 29 VITIPINEST--TLLLKNKGKSE--HT--FTI-KK--LG----I--DV---VVESGKEKNITVK---PKSAGTYE 82 (100)
T ss_dssp EEEECTTSCE--EEEEEECSSSC--EE--EEE-GG--GT----E--EE---EECTTCEEEEEEC---CCSCEEEE
T ss_pred EEEECCCCEE--EEEEEcCCCce--EE--EEE-ec--CC----c--ce---eecCCcceeEEEe---cccCceEE
Confidence 3456666643 58888987643 11 111 11 11 1 11 3578998776653 68999884
No 165
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=21.52 E-value=1.7e+02 Score=26.02 Aligned_cols=60 Identities=28% Similarity=0.358 Sum_probs=41.0
Q ss_pred cEEEEEEeCCeeeeEEeeecCCCCcccCHHHHHHHHHHHhCCCCCCccEEEEecCCCCEEEEcCChhHHHH
Q 003172 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (842)
Q Consensus 4 ~i~IKv~~gd~lRRf~~~l~~n~~~dl~~~~L~~ki~~lf~l~~d~~~~lrY~DeDGD~VTL~dd~DL~~a 74 (842)
.+.|+|+.-+ -+.|.+.+.. +.+...|+.+|++.++++++ ...|.|. |- .|.|+.-|.++
T Consensus 35 ~m~I~Vk~~~-g~~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~qrLi~~---Gk--~L~D~~tL~~~ 94 (111)
T 2ojr_A 35 AMQIFVKTLT-GKTITLEVEP----SDTIENVKAKIQDKEGIPPD-QQRLIFA---GK--QLEDGRTLSDY 94 (111)
T ss_dssp CEEEEEECSS-SCEEEEEECT----TCBHHHHHHHHHHHHCCCTT-TEEEEET---TE--ECCSSCBTTTT
T ss_pred eEEEEEEcCC-CCEEEEEeCC----CCCHHHHHHHHHHHHCcCcc-cEEEEEC---CE--ECCCCCcHHHc
Confidence 4667777532 2456666664 57899999999999999765 6677774 32 45666666653
No 166
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=21.33 E-value=31 Score=30.34 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=17.1
Q ss_pred ccEEEEEEeCCeeeeEEeeecCC
Q 003172 3 STMVIKVKYGDTLRRFNARVDEN 25 (842)
Q Consensus 3 ~~i~IKv~~gd~lRRf~~~l~~n 25 (842)
.++-|||+|+ +||.+|++++
T Consensus 49 anlP~~V~F~---~kF~aHlred 68 (75)
T 1dj7_B 49 ANLPVLVKFE---QRFKAHFRPD 68 (75)
T ss_dssp CSSCEEEEET---TTEEEEECGG
T ss_pred CCCCEEEEEe---hHhhhhcchh
Confidence 4567999998 8999999975
No 167
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.17 E-value=57 Score=29.01 Aligned_cols=43 Identities=12% Similarity=0.168 Sum_probs=31.6
Q ss_pred HHHHHcCCccchhhHHHHHhccCc-hhhhHhhhhccccchhHHHHHHhcccccccc
Q 003172 735 RELEEMGFKQVDLNKEILRMNEYD-LEQSVDDLCGVSEWDPILEELQEMVSSYVKT 789 (842)
Q Consensus 735 ~eLe~MGFkq~dlnkEiLr~n~Yd-LeqsvDdLcg~~EwdplleEl~Emgf~d~~~ 789 (842)
.=|+.+|+.|- ++.+.+|+|+ ++. |+... .++|+|||+.....
T Consensus 27 ~WL~~lgL~~Y---~~~F~~~~~~~~~~----L~~lt-----~~DL~~lGI~~~Gh 70 (99)
T 2eao_A 27 DWLSAIKMVQY---RDSFLTAGFTSLQL----VTQMT-----SEDLLRIGITLAGH 70 (99)
T ss_dssp HHHHTTTCGGG---HHHHHHHTCCBHHH----HTTCC-----HHHHHHHTCCCHHH
T ss_pred HHHHHCCcHHH---HHHHHHcCCChHHH----HhhCC-----HHHHHHCCCCChhH
Confidence 47888898886 8899999999 543 33333 36789999986543
No 168
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=21.11 E-value=2.5e+02 Score=26.96 Aligned_cols=35 Identities=11% Similarity=0.257 Sum_probs=27.1
Q ss_pred CCCCCCEEEEE--EEEecCCCCceEEEEEEEECCCCCcc
Q 003172 541 GVPVEGEIDIA--VDFTAPELPGRYISYWRMSSPSGVKF 577 (842)
Q Consensus 541 ~V~PGEevdVS--V~L~AP~~pG~YiSyWRL~tpdG~~F 577 (842)
-+.|||...-+ +.|.+| .|.-.+++.|.+++|..|
T Consensus 79 vL~PGe~F~YtSg~~L~Tp--~G~M~G~y~m~~~~G~~F 115 (139)
T 1xq4_A 79 LLAPGETFEYTSGCPLPTP--IGTMRGTYHCVGENGIPF 115 (139)
T ss_dssp EECTTCEEEEEEEEEESSS--EEEEEEEEEEEETTSCEE
T ss_pred cCCCCCceEEcCCcCcCCC--ceEEEEEEEEEeCCCCEE
Confidence 37899987765 456665 799999999999887644
No 169
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=21.08 E-value=80 Score=32.00 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhccccchhHHHHHHhccccccc
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMVSSYVK 788 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~~EwdplleEl~Emgf~d~~ 788 (842)
+..++-|.++||...|+-+ ||++|-.=|-.++++ +.|.++-|+++|+.+.+
T Consensus 42 ~~~l~fL~~lG~~~~~i~~-il~~~P~lL~~~~e~------l~p~v~~L~~~Gls~~~ 92 (270)
T 3m66_A 42 KQMLLFLKDVGIEDNQLGA-FLTKNHAIFSEDLEN------LKTRVAYLHSKNFSKAD 92 (270)
T ss_dssp HHHHHHHHHHTCCGGGHHH-HHHHCTTGGGSCHHH------HHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHcCCCHHHHHH-HHHhCChhhhCCHHH------HHHHHHHHHHcCCCHHH
No 170
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=20.88 E-value=4.7e+02 Score=23.63 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=22.5
Q ss_pred CCCCCCEEEEEEEEecCCCCceEEEEEEEECCCCCc-cCCeEEEE
Q 003172 541 GVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVK-FGQRVWVL 584 (842)
Q Consensus 541 ~V~PGEevdVSV~L~AP~~pG~YiSyWRL~tpdG~~-FGdrLWV~ 584 (842)
.+.||++..+++.+ .++|.| |=.|+--|.. -|-+.++.
T Consensus 99 ~l~pG~~~~~~~~~---~~~G~y---~f~C~~~~H~~~GM~g~i~ 137 (140)
T 1qhq_A 99 MLNAGESGSVTFRT---PAPGTY---LYICTFPGHYLAGMKGTLT 137 (140)
T ss_dssp CBCTTEEEEEEEEC---CSSEEE---EEECCSTTTTTTTCEEEEE
T ss_pred eeCCCceeEEEEEe---CCCeeE---EEEeCCcCHhhcCCEEEEE
Confidence 47899998888765 568975 4444422322 34444443
No 171
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.38 E-value=1.1e+02 Score=27.22 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCccchhhHHHHHhccCchhhhHhhhhccccchhHHHHHHhcccccccchhhh
Q 003172 731 QTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMVSSYVKTVMKC 793 (842)
Q Consensus 731 ~~ll~eLe~MGFkq~dlnkEiLr~n~YdLeqsvDdLcg~~EwdplleEl~Emgf~d~~~~~~~ 793 (842)
+....=|++.||.+. --.|++++|++|-+ .+-.|. .+.|+|||+.......|-
T Consensus 33 ~~V~~WL~~lgl~~~-~y~~~F~~~~I~G~-~Ll~Lt--------~~dLkeLGI~~~G~R~ki 85 (103)
T 2e8o_A 33 EQVCSFLRRGGFEEP-VLLKNIRENEITGA-LLPCLD--------ESRFENLGVSSLGERKKL 85 (103)
T ss_dssp HHHHHHHHHHTCCCH-HHHHHHHHTTCCTT-TTTTCC--------HHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHcCCChH-HHHHHHHHcCCCHH-HHHhCC--------HHHHHHcCCCCHHHHHHH
Confidence 444577888899862 34789999999987 333343 367899999765554443
No 172
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=20.20 E-value=53 Score=25.19 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=18.4
Q ss_pred cccCceecCCCCCCCcccc---ceecCCCC
Q 003172 375 MFHKGVRCDGCGVHPITGP---RFKSKVKD 401 (842)
Q Consensus 375 vvH~GV~CDgC~~~PI~G~---RYKCsvC~ 401 (842)
.++.-..||.|+ ..|.|. -|+|..|.
T Consensus 7 ~~~~pt~C~~C~-~~l~g~~~qg~~C~~C~ 35 (50)
T 1ptq_A 7 NYMSPTFCDHCG-SLLWGLVKQGLKCEDCG 35 (50)
T ss_dssp CCSSCCBCTTTC-CBCCSSSSCEEEETTTC
T ss_pred cCCCCCCcCCCC-ceeeccCCccCEeCCCC
Confidence 345568899998 678884 46777663
Done!