Query 003175
Match_columns 842
No_of_seqs 751 out of 4979
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 18:28:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1514 Origin recognition com 100.0 1.2E-65 2.7E-70 566.8 41.2 654 149-839 99-767 (767)
2 PTZ00112 origin recognition co 100.0 6.2E-49 1.3E-53 444.9 42.0 373 443-836 738-1158(1164)
3 KOG2227 Pre-initiation complex 100.0 7.8E-44 1.7E-48 378.2 31.4 375 444-833 134-518 (529)
4 COG1474 CDC6 Cdc6-related prot 100.0 1.9E-42 4.1E-47 378.2 34.4 353 447-834 4-365 (366)
5 PRK00411 cdc6 cell division co 100.0 5.6E-41 1.2E-45 378.8 39.8 366 446-839 16-394 (394)
6 TIGR02928 orc1/cdc6 family rep 100.0 1.2E-39 2.5E-44 364.4 39.8 347 448-818 3-365 (365)
7 cd04718 BAH_plant_2 BAH, or Br 100.0 1.5E-42 3.2E-47 318.2 9.6 148 211-363 1-148 (148)
8 KOG2228 Origin recognition com 99.9 1.8E-25 3.9E-30 229.1 27.6 367 449-836 15-397 (408)
9 COG1222 RPT1 ATP-dependent 26S 99.9 8.3E-25 1.8E-29 226.8 19.3 221 461-731 152-394 (406)
10 KOG0730 AAA+-type ATPase [Post 99.9 5E-23 1.1E-27 228.6 15.4 234 436-732 429-677 (693)
11 KOG0738 AAA+-type ATPase [Post 99.9 7E-22 1.5E-26 206.0 14.9 245 437-734 208-474 (491)
12 COG1223 Predicted ATPase (AAA+ 99.9 1.5E-21 3.3E-26 193.2 15.2 218 460-729 121-355 (368)
13 KOG0736 Peroxisome assembly fa 99.9 2.9E-21 6.3E-26 216.2 18.8 257 428-736 660-939 (953)
14 cd04717 BAH_polybromo BAH, or 99.9 2.2E-22 4.9E-27 186.7 6.2 99 266-364 20-121 (121)
15 KOG0733 Nuclear AAA ATPase (VC 99.8 1.8E-20 3.9E-25 204.9 18.5 252 429-732 500-772 (802)
16 cd04716 BAH_plantDCM_I BAH, or 99.8 4.8E-22 1E-26 181.5 5.1 98 266-363 19-121 (122)
17 KOG0733 Nuclear AAA ATPase (VC 99.8 1.1E-19 2.3E-24 199.0 22.8 205 460-702 190-417 (802)
18 PRK07003 DNA polymerase III su 99.8 1.7E-19 3.7E-24 206.7 22.8 204 453-695 6-227 (830)
19 TIGR00635 ruvB Holliday juncti 99.8 4.2E-19 9.1E-24 193.4 23.4 267 460-804 4-287 (305)
20 KOG0734 AAA+-type ATPase conta 99.8 2.5E-20 5.3E-25 200.8 13.3 227 437-730 300-542 (752)
21 COG2255 RuvB Holliday junction 99.8 1.5E-18 3.2E-23 175.2 23.3 240 450-755 17-272 (332)
22 COG2256 MGS1 ATPase related to 99.8 1.2E-19 2.7E-24 191.6 15.9 188 462-697 26-221 (436)
23 PRK00080 ruvB Holliday junctio 99.8 1.8E-18 3.9E-23 189.8 25.8 274 452-804 18-308 (328)
24 KOG0737 AAA+-type ATPase [Post 99.8 7.3E-20 1.6E-24 191.6 13.7 248 437-732 88-362 (386)
25 PRK03992 proteasome-activating 99.8 1.5E-19 3.2E-24 201.9 16.5 227 455-732 126-375 (389)
26 PRK14956 DNA polymerase III su 99.8 6.3E-19 1.4E-23 196.0 20.6 261 460-777 18-296 (484)
27 PF05496 RuvB_N: Holliday junc 99.8 3.2E-19 7E-24 177.5 15.9 199 450-696 15-229 (233)
28 cd04714 BAH_BAHCC1 BAH, or Bro 99.8 9.1E-21 2E-25 174.9 4.6 94 266-359 20-119 (121)
29 PRK12323 DNA polymerase III su 99.8 1.2E-18 2.5E-23 197.7 21.9 196 460-694 16-231 (700)
30 PTZ00454 26S protease regulato 99.8 8.4E-19 1.8E-23 194.7 18.4 220 462-731 147-388 (398)
31 PRK14960 DNA polymerase III su 99.8 2.9E-18 6.4E-23 195.0 22.2 226 460-741 15-255 (702)
32 PTZ00361 26 proteosome regulat 99.8 7.5E-19 1.6E-23 196.0 16.2 221 461-731 184-426 (438)
33 KOG0728 26S proteasome regulat 99.8 7.4E-19 1.6E-23 173.0 13.9 221 461-731 148-390 (404)
34 COG0466 Lon ATP-dependent Lon 99.8 3.3E-19 7.1E-24 200.1 12.8 299 356-696 232-561 (782)
35 KOG0652 26S proteasome regulat 99.8 6.9E-19 1.5E-23 174.2 13.1 219 462-731 173-414 (424)
36 CHL00195 ycf46 Ycf46; Provisio 99.8 1.2E-18 2.6E-23 197.4 17.0 198 483-732 255-466 (489)
37 PRK14958 DNA polymerase III su 99.8 5.8E-18 1.3E-22 193.8 22.6 248 460-763 16-278 (509)
38 PRK14964 DNA polymerase III su 99.8 9.1E-18 2E-22 189.1 23.0 224 460-739 13-251 (491)
39 PRK07994 DNA polymerase III su 99.8 1.2E-17 2.6E-22 193.3 24.5 212 460-727 16-242 (647)
40 KOG0989 Replication factor C, 99.8 5.1E-18 1.1E-22 173.2 17.9 200 460-694 36-236 (346)
41 KOG0739 AAA+-type ATPase [Post 99.8 5.8E-19 1.3E-23 177.9 10.8 197 436-681 128-337 (439)
42 PRK08691 DNA polymerase III su 99.8 1.2E-17 2.6E-22 192.1 22.8 256 453-764 6-279 (709)
43 PRK06645 DNA polymerase III su 99.8 1.5E-17 3.4E-22 188.9 23.5 229 460-741 21-268 (507)
44 PRK14952 DNA polymerase III su 99.8 1.3E-17 2.9E-22 192.2 23.2 214 460-728 13-243 (584)
45 PRK14962 DNA polymerase III su 99.8 2.6E-17 5.6E-22 186.5 24.7 225 460-740 14-253 (472)
46 PRK07764 DNA polymerase III su 99.8 1.7E-17 3.6E-22 198.3 24.1 262 460-776 15-294 (824)
47 PRK14961 DNA polymerase III su 99.8 2.2E-17 4.8E-22 183.2 23.5 226 460-741 16-256 (363)
48 KOG2028 ATPase related to the 99.8 3.4E-18 7.3E-23 176.8 15.2 214 462-728 140-367 (554)
49 PRK14951 DNA polymerase III su 99.8 2.1E-17 4.6E-22 191.0 23.7 262 460-777 16-298 (618)
50 PRK14949 DNA polymerase III su 99.8 1.8E-17 3.9E-22 193.9 23.0 197 460-695 16-227 (944)
51 TIGR01242 26Sp45 26S proteasom 99.8 4E-18 8.7E-23 189.7 16.0 224 455-729 117-363 (364)
52 KOG0727 26S proteasome regulat 99.8 3.5E-18 7.6E-23 168.5 13.3 195 486-731 188-398 (408)
53 PRK14959 DNA polymerase III su 99.8 2.9E-17 6.3E-22 188.4 22.4 263 460-778 16-294 (624)
54 KOG2004 Mitochondrial ATP-depe 99.8 6.2E-18 1.3E-22 188.4 14.4 294 357-694 320-647 (906)
55 CHL00176 ftsH cell division pr 99.7 1.9E-17 4.1E-22 193.4 18.5 223 458-730 181-424 (638)
56 PRK05563 DNA polymerase III su 99.7 1.2E-16 2.6E-21 185.5 24.8 212 460-727 16-242 (559)
57 TIGR01241 FtsH_fam ATP-depende 99.7 1.1E-17 2.4E-22 193.4 16.0 193 486-730 87-296 (495)
58 PLN03025 replication factor C 99.7 1.9E-16 4.1E-21 173.1 24.4 190 460-691 13-203 (319)
59 COG2812 DnaX DNA polymerase II 99.7 2.1E-17 4.5E-22 185.2 16.4 274 460-775 16-291 (515)
60 TIGR02881 spore_V_K stage V sp 99.7 6.8E-17 1.5E-21 171.5 18.6 211 461-699 7-241 (261)
61 PRK14969 DNA polymerase III su 99.7 1.4E-16 2.9E-21 183.8 22.1 213 460-728 16-243 (527)
62 KOG0729 26S proteasome regulat 99.7 2E-17 4.3E-22 164.4 12.9 196 485-731 209-420 (435)
63 TIGR01243 CDC48 AAA family ATP 99.7 6.6E-17 1.4E-21 195.5 20.4 210 486-733 486-714 (733)
64 KOG0726 26S proteasome regulat 99.7 1.2E-17 2.7E-22 167.9 11.1 195 486-730 218-427 (440)
65 TIGR00362 DnaA chromosomal rep 99.7 1.8E-16 3.9E-21 179.2 21.9 252 487-770 136-400 (405)
66 PRK09111 DNA polymerase III su 99.7 3.9E-16 8.5E-21 181.1 24.4 213 460-728 24-256 (598)
67 PRK14957 DNA polymerase III su 99.7 2.8E-16 6.2E-21 179.6 22.7 197 460-695 16-227 (546)
68 KOG0731 AAA+-type ATPase conta 99.7 4.9E-17 1.1E-21 186.9 16.3 229 437-732 307-556 (774)
69 PRK07133 DNA polymerase III su 99.7 3.2E-16 7E-21 182.3 22.8 197 460-695 18-226 (725)
70 PRK00149 dnaA chromosomal repl 99.7 1.4E-16 3E-21 182.2 19.6 252 487-770 148-412 (450)
71 PRK14965 DNA polymerase III su 99.7 2.3E-16 5E-21 184.1 21.6 198 460-696 16-228 (576)
72 COG0464 SpoVK ATPases of the A 99.7 1.3E-16 2.7E-21 185.3 18.7 237 434-732 235-486 (494)
73 PRK05896 DNA polymerase III su 99.7 4.1E-16 8.8E-21 178.1 21.9 212 460-727 16-242 (605)
74 KOG0740 AAA+-type ATPase [Post 99.7 4.7E-17 1E-21 177.1 13.4 248 435-733 147-408 (428)
75 cd04721 BAH_plant_1 BAH, or Br 99.7 4.2E-18 9.2E-23 158.2 4.5 90 266-355 22-117 (130)
76 PRK14087 dnaA chromosomal repl 99.7 1.8E-16 3.9E-21 179.5 18.4 254 487-771 141-412 (450)
77 TIGR03689 pup_AAA proteasome A 99.7 3.9E-16 8.4E-21 176.5 20.9 269 460-757 182-480 (512)
78 PRK08451 DNA polymerase III su 99.7 1.7E-15 3.6E-20 172.3 25.2 198 460-696 14-226 (535)
79 TIGR02397 dnaX_nterm DNA polym 99.7 1.2E-15 2.7E-20 169.9 23.3 214 460-729 14-242 (355)
80 PRK14963 DNA polymerase III su 99.7 1.9E-15 4.2E-20 172.7 24.8 212 460-728 14-239 (504)
81 PRK14954 DNA polymerase III su 99.7 1.3E-15 2.7E-20 177.1 23.4 218 460-728 16-256 (620)
82 PRK06305 DNA polymerase III su 99.7 1.3E-15 2.8E-20 172.6 22.8 214 460-729 17-246 (451)
83 PRK14953 DNA polymerase III su 99.7 1.3E-15 2.8E-20 173.6 22.8 212 460-727 16-242 (486)
84 PRK06647 DNA polymerase III su 99.7 1.5E-15 3.2E-20 175.6 23.5 212 460-727 16-242 (563)
85 PRK10787 DNA-binding ATP-depen 99.7 2.2E-16 4.8E-21 189.1 16.7 279 356-680 231-540 (784)
86 PRK14088 dnaA chromosomal repl 99.7 9E-16 1.9E-20 173.8 20.7 253 487-770 130-397 (440)
87 PRK14086 dnaA chromosomal repl 99.7 1.3E-15 2.7E-20 174.1 21.7 251 487-770 314-579 (617)
88 PRK12402 replication factor C 99.7 2.4E-15 5.2E-20 166.3 22.9 224 460-728 15-248 (337)
89 TIGR00763 lon ATP-dependent pr 99.7 1.7E-16 3.8E-21 192.1 15.0 282 357-680 230-539 (775)
90 CHL00181 cbbX CbbX; Provisiona 99.7 8.4E-16 1.8E-20 164.2 18.0 220 444-699 12-257 (287)
91 PRK14955 DNA polymerase III su 99.7 1.4E-15 3.1E-20 170.7 20.5 219 460-729 16-257 (397)
92 PRK13341 recombination factor 99.7 1.7E-15 3.7E-20 179.2 21.7 211 460-728 28-246 (725)
93 PRK14950 DNA polymerase III su 99.7 4.2E-15 9E-20 174.5 24.9 213 460-728 16-244 (585)
94 CHL00206 ycf2 Ycf2; Provisiona 99.7 4.9E-16 1.1E-20 190.2 17.4 214 485-732 1628-1880(2281)
95 PRK00440 rfc replication facto 99.7 5.7E-15 1.2E-19 162.0 23.9 210 460-730 17-227 (319)
96 TIGR02880 cbbX_cfxQ probable R 99.7 1.3E-15 2.8E-20 162.9 18.2 208 461-699 23-256 (284)
97 smart00439 BAH Bromo adjacent 99.7 4.7E-17 1E-21 151.5 5.4 97 266-362 18-119 (120)
98 cd04370 BAH BAH, or Bromo Adja 99.7 5.8E-17 1.3E-21 151.5 5.9 98 265-362 21-122 (123)
99 PRK14948 DNA polymerase III su 99.7 7.2E-15 1.6E-19 171.8 24.2 196 460-694 16-228 (620)
100 PRK04195 replication factor C 99.7 2.9E-15 6.2E-20 172.7 20.6 186 460-691 14-205 (482)
101 KOG0991 Replication factor C, 99.7 1.6E-15 3.4E-20 148.5 15.1 193 460-694 27-220 (333)
102 KOG0735 AAA+-type ATPase [Post 99.7 7.7E-16 1.7E-20 171.5 14.6 215 435-700 661-889 (952)
103 PRK13342 recombination factor 99.7 1.4E-14 3.1E-19 163.7 25.3 201 460-729 12-219 (413)
104 PRK06893 DNA replication initi 99.7 2.7E-15 5.8E-20 155.8 17.5 186 487-727 39-228 (229)
105 PRK14970 DNA polymerase III su 99.7 9.2E-15 2E-19 163.3 23.2 212 460-727 17-231 (367)
106 COG0465 HflB ATP-dependent Zn 99.6 2E-15 4.3E-20 171.2 16.5 225 457-732 147-393 (596)
107 TIGR02639 ClpA ATP-dependent C 99.6 1.3E-14 2.9E-19 175.0 24.4 238 460-734 182-434 (731)
108 PRK12422 chromosomal replicati 99.6 9.8E-15 2.1E-19 164.9 21.4 250 487-770 141-407 (445)
109 PLN00020 ribulose bisphosphate 99.6 2.8E-15 6E-20 159.1 14.8 156 486-674 147-327 (413)
110 PRK14971 DNA polymerase III su 99.6 2.4E-14 5.2E-19 167.5 22.8 198 460-696 17-230 (614)
111 PRK08084 DNA replication initi 99.6 9.8E-15 2.1E-19 152.2 17.5 185 487-727 45-234 (235)
112 TIGR01243 CDC48 AAA family ATP 99.6 7.3E-15 1.6E-19 177.8 18.7 235 460-732 178-438 (733)
113 COG0593 DnaA ATPase involved i 99.6 3.8E-14 8.1E-19 154.8 21.9 252 486-771 112-376 (408)
114 PRK08727 hypothetical protein; 99.6 2E-14 4.3E-19 149.7 18.6 184 487-727 41-229 (233)
115 PRK10733 hflB ATP-dependent me 99.6 6.4E-15 1.4E-19 174.4 16.5 194 486-731 184-394 (644)
116 TIGR02902 spore_lonB ATP-depen 99.6 7.9E-15 1.7E-19 169.8 16.7 237 460-727 65-330 (531)
117 KOG0730 AAA+-type ATPase [Post 99.6 7.4E-15 1.6E-19 164.0 15.1 177 485-699 216-404 (693)
118 COG1224 TIP49 DNA helicase TIP 99.6 8.9E-14 1.9E-18 144.5 19.4 132 576-728 290-431 (450)
119 cd04713 BAH_plant_3 BAH, or Br 99.6 1.8E-15 4E-20 144.0 6.1 100 266-365 36-139 (146)
120 PF00308 Bac_DnaA: Bacterial d 99.6 4.1E-14 8.9E-19 145.6 16.0 179 487-696 34-216 (219)
121 PF01426 BAH: BAH domain; Int 99.6 8.4E-16 1.8E-20 142.9 3.2 96 266-363 19-119 (119)
122 PRK05642 DNA replication initi 99.6 7.4E-14 1.6E-18 145.4 17.7 185 487-727 45-233 (234)
123 TIGR03420 DnaA_homol_Hda DnaA 99.6 6.6E-14 1.4E-18 145.6 17.1 199 465-726 22-225 (226)
124 TIGR00602 rad24 checkpoint pro 99.6 5.3E-14 1.1E-18 163.3 17.5 223 460-693 84-328 (637)
125 PRK08903 DnaA regulatory inact 99.6 8.3E-14 1.8E-18 144.9 17.2 181 487-727 42-224 (227)
126 KOG0651 26S proteasome regulat 99.6 6.8E-15 1.5E-19 150.1 8.1 193 486-731 165-375 (388)
127 TIGR03015 pepcterm_ATPase puta 99.6 3.2E-13 7E-18 144.4 21.5 230 467-730 26-267 (269)
128 PF00004 AAA: ATPase family as 99.6 1.8E-14 3.9E-19 136.1 10.4 119 490-642 1-131 (132)
129 TIGR03345 VI_ClpV1 type VI sec 99.5 1.3E-13 2.8E-18 167.4 19.5 211 460-697 187-411 (852)
130 PRK04132 replication factor C 99.5 5.3E-13 1.2E-17 158.6 22.3 171 487-694 564-737 (846)
131 KOG0732 AAA+-type ATPase conta 99.5 6.3E-14 1.4E-18 165.5 12.6 253 435-733 259-529 (1080)
132 PRK09112 DNA polymerase III su 99.5 6.1E-12 1.3E-16 137.9 27.0 206 460-693 23-245 (351)
133 CHL00095 clpC Clp protease ATP 99.5 4.2E-13 9.1E-18 163.8 18.2 209 460-696 179-401 (821)
134 PRK11034 clpA ATP-dependent Cl 99.5 4.2E-13 9.2E-18 159.7 17.3 235 461-732 187-436 (758)
135 PRK06620 hypothetical protein; 99.5 5.3E-13 1.1E-17 136.6 15.4 167 488-726 45-213 (214)
136 PRK07940 DNA polymerase III su 99.5 1.4E-12 3.1E-17 144.8 19.4 192 460-690 5-215 (394)
137 PRK09087 hypothetical protein; 99.5 6.1E-13 1.3E-17 137.4 15.1 177 487-729 44-222 (226)
138 TIGR00678 holB DNA polymerase 99.5 8.3E-13 1.8E-17 133.2 15.5 170 475-685 3-188 (188)
139 PHA02544 44 clamp loader, smal 99.5 1.1E-12 2.4E-17 143.6 17.8 184 460-692 21-213 (316)
140 KOG0742 AAA+-type ATPase [Post 99.5 5.6E-13 1.2E-17 140.3 13.7 158 466-659 364-530 (630)
141 TIGR02903 spore_lon_C ATP-depe 99.5 4.8E-12 1E-16 148.9 22.7 246 460-728 154-429 (615)
142 KOG1827 Chromatin remodeling c 99.5 3.5E-14 7.6E-19 159.6 4.4 111 266-376 207-320 (629)
143 cd04715 BAH_Orc1p_like BAH, or 99.4 4.3E-14 9.4E-19 135.3 4.2 87 265-351 43-145 (159)
144 cd04709 BAH_MTA BAH, or Bromo 99.4 7.2E-14 1.6E-18 134.2 5.0 98 266-363 19-140 (164)
145 KOG0735 AAA+-type ATPase [Post 99.4 4.6E-12 1E-16 141.8 19.6 203 487-731 431-650 (952)
146 TIGR03346 chaperone_ClpB ATP-d 99.4 1.5E-12 3.1E-17 159.6 15.9 211 460-697 173-397 (852)
147 cd04712 BAH_DCM_I BAH, or Brom 99.4 1.7E-13 3.6E-18 127.5 5.9 95 265-363 31-129 (130)
148 COG0542 clpA ATP-binding subun 99.4 8.7E-13 1.9E-17 153.5 12.3 239 429-694 465-752 (786)
149 TIGR02640 gas_vesic_GvpN gas v 99.4 1.3E-11 2.8E-16 131.0 20.0 223 468-731 6-259 (262)
150 KOG2543 Origin recognition com 99.4 2.8E-10 6.1E-15 120.2 27.5 217 458-694 4-232 (438)
151 PRK07471 DNA polymerase III su 99.4 1.8E-11 3.9E-16 134.9 19.5 197 460-691 19-241 (365)
152 PRK11034 clpA ATP-dependent Cl 99.4 5.4E-12 1.2E-16 150.4 16.4 223 443-694 446-713 (758)
153 PF05673 DUF815: Protein of un 99.4 4.1E-11 8.9E-16 121.6 20.3 170 460-668 27-219 (249)
154 PF05621 TniB: Bacterial TniB 99.4 2.1E-11 4.6E-16 127.5 17.8 210 487-724 61-284 (302)
155 KOG0741 AAA+-type ATPase [Post 99.4 4.4E-13 9.6E-18 145.2 5.1 214 487-732 256-493 (744)
156 TIGR02639 ClpA ATP-dependent C 99.4 7.3E-12 1.6E-16 151.3 16.2 231 437-694 436-709 (731)
157 PF06068 TIP49: TIP49 C-termin 99.4 1.1E-11 2.4E-16 131.7 15.5 110 576-693 277-396 (398)
158 TIGR03345 VI_ClpV1 type VI sec 99.4 5.7E-12 1.2E-16 153.1 14.9 229 441-697 552-831 (852)
159 cd04708 BAH_plantDCM_II BAH, o 99.3 5.2E-13 1.1E-17 131.0 4.5 98 266-363 41-146 (202)
160 PRK07399 DNA polymerase III su 99.3 4.8E-10 1E-14 121.4 27.7 209 460-694 4-227 (314)
161 PRK10865 protein disaggregatio 99.3 1.3E-11 2.8E-16 150.6 16.0 189 460-675 178-377 (857)
162 PRK05342 clpX ATP-dependent pr 99.3 2.7E-11 5.9E-16 135.2 16.9 212 462-699 73-381 (412)
163 PRK05564 DNA polymerase III su 99.3 2.3E-10 4.9E-15 125.0 23.8 189 460-690 4-192 (313)
164 PRK05707 DNA polymerase III su 99.3 5E-11 1.1E-15 129.6 18.3 169 486-690 21-205 (328)
165 PRK13531 regulatory ATPase Rav 99.3 9.3E-11 2E-15 130.6 20.1 224 460-731 20-285 (498)
166 KOG1942 DNA helicase, TBP-inte 99.3 7.1E-11 1.5E-15 119.7 16.9 132 576-728 295-437 (456)
167 KOG0744 AAA+-type ATPase [Post 99.3 9.3E-12 2E-16 128.0 9.8 151 487-659 177-342 (423)
168 cd04760 BAH_Dnmt1_I BAH, or Br 99.3 2.2E-12 4.7E-17 117.0 4.4 92 266-359 20-123 (124)
169 PRK08058 DNA polymerase III su 99.3 1.1E-10 2.3E-15 128.0 17.9 184 462-691 7-207 (329)
170 TIGR03346 chaperone_ClpB ATP-d 99.3 3.6E-11 7.8E-16 147.4 15.8 228 444-698 554-827 (852)
171 cd04711 BAH_Dnmt1_II BAH, or B 99.3 1.6E-12 3.6E-17 117.8 3.0 92 266-360 26-133 (137)
172 cd04720 BAH_Orc1p_Yeast BAH, o 99.3 2.9E-12 6.3E-17 126.1 4.8 95 266-360 68-175 (179)
173 PRK07993 DNA polymerase III su 99.3 1.1E-10 2.5E-15 127.2 17.4 180 474-691 12-207 (334)
174 KOG0990 Replication factor C, 99.3 8.4E-11 1.8E-15 121.5 14.7 246 462-746 43-289 (360)
175 PRK06871 DNA polymerase III su 99.2 2.9E-10 6.3E-15 122.7 19.3 180 473-691 11-206 (325)
176 PRK08769 DNA polymerase III su 99.2 2.5E-10 5.3E-15 123.1 17.9 186 472-690 12-210 (319)
177 PRK10865 protein disaggregatio 99.2 1E-10 2.2E-15 142.9 16.4 225 443-694 556-826 (857)
178 KOG2035 Replication factor C, 99.2 1.2E-09 2.7E-14 110.4 21.0 262 462-773 15-299 (351)
179 PRK05201 hslU ATP-dependent pr 99.2 7.6E-10 1.7E-14 121.0 20.9 147 577-731 249-434 (443)
180 TIGR00390 hslU ATP-dependent p 99.2 1.2E-09 2.6E-14 119.4 22.5 147 577-731 247-432 (441)
181 TIGR00382 clpX endopeptidase C 99.2 3.9E-10 8.5E-15 125.2 19.1 213 461-699 78-387 (413)
182 COG0470 HolB ATPase involved i 99.2 1.7E-10 3.6E-15 127.0 15.7 190 462-695 3-206 (325)
183 cd00009 AAA The AAA+ (ATPases 99.2 1.6E-10 3.4E-15 110.6 13.3 147 464-643 2-151 (151)
184 TIGR01650 PD_CobS cobaltochela 99.2 2.2E-10 4.7E-15 122.4 15.5 166 487-674 64-251 (327)
185 KOG2680 DNA helicase TIP49, TB 99.2 8.3E-10 1.8E-14 112.4 18.8 137 574-731 285-431 (454)
186 KOG1969 DNA replication checkp 99.2 3.7E-10 8E-15 127.6 16.9 176 486-699 325-521 (877)
187 TIGR02974 phageshock_pspF psp 99.2 6.4E-11 1.4E-15 129.4 10.7 208 462-696 1-233 (329)
188 CHL00095 clpC Clp protease ATP 99.2 2.4E-10 5.2E-15 139.8 16.8 227 441-694 495-779 (821)
189 PRK06964 DNA polymerase III su 99.2 3.4E-09 7.4E-14 115.3 23.8 182 486-691 20-228 (342)
190 PF03215 Rad17: Rad17 cell cyc 99.2 3.4E-10 7.3E-15 129.6 16.6 218 462-694 21-269 (519)
191 KOG0825 PHD Zn-finger protein 99.2 6.3E-12 1.4E-16 140.2 2.3 97 140-236 155-265 (1134)
192 PF01637 Arch_ATPase: Archaeal 99.2 1E-10 2.2E-15 121.8 11.4 198 462-685 1-231 (234)
193 COG0542 clpA ATP-binding subun 99.2 3.8E-10 8.2E-15 131.8 16.7 207 461-699 171-396 (786)
194 KOG0736 Peroxisome assembly fa 99.2 7.8E-10 1.7E-14 125.5 18.1 230 463-730 404-654 (953)
195 PRK06090 DNA polymerase III su 99.2 1.4E-09 3.1E-14 117.0 19.1 178 472-690 11-203 (319)
196 PRK13407 bchI magnesium chelat 99.2 2.1E-10 4.6E-15 124.3 12.6 242 460-728 8-305 (334)
197 PF13177 DNA_pol3_delta2: DNA 99.1 5.5E-10 1.2E-14 109.4 13.7 143 472-645 5-162 (162)
198 COG5034 TNG2 Chromatin remodel 99.1 3E-11 6.6E-16 119.5 4.2 59 176-237 209-270 (271)
199 TIGR01817 nifA Nif-specific re 99.1 2.3E-10 4.9E-15 134.2 12.1 212 458-696 194-428 (534)
200 COG3267 ExeA Type II secretory 99.1 2.7E-09 5.9E-14 107.7 17.8 204 473-699 40-256 (269)
201 COG2607 Predicted ATPase (AAA+ 99.1 3.9E-09 8.5E-14 105.0 18.1 173 461-672 61-255 (287)
202 KOG0743 AAA+-type ATPase [Post 99.1 2E-09 4.3E-14 117.0 17.3 133 483-659 231-385 (457)
203 cd04710 BAH_fungalPHD BAH, or 99.1 4.2E-11 9.1E-16 111.9 3.7 94 265-360 27-134 (135)
204 PRK10820 DNA-binding transcrip 99.1 1.2E-09 2.7E-14 126.9 16.5 215 456-697 200-438 (520)
205 PRK11608 pspF phage shock prot 99.1 3.4E-10 7.5E-15 123.8 11.1 211 459-696 5-240 (326)
206 COG2204 AtoC Response regulato 99.1 9.8E-10 2.1E-14 122.2 14.1 214 458-698 139-376 (464)
207 PRK05022 anaerobic nitric oxid 99.1 1.1E-09 2.4E-14 127.2 15.3 213 458-697 185-421 (509)
208 CHL00081 chlI Mg-protoporyphyr 99.1 6.2E-09 1.3E-13 113.2 19.8 243 460-731 17-324 (350)
209 TIGR02030 BchI-ChlI magnesium 99.1 3.3E-09 7.2E-14 115.4 17.4 139 577-731 131-311 (337)
210 PF13191 AAA_16: AAA ATPase do 99.1 3.9E-10 8.4E-15 113.2 8.4 141 462-614 2-185 (185)
211 PF13401 AAA_22: AAA domain; P 99.0 1.6E-09 3.6E-14 102.1 12.1 117 487-615 4-123 (131)
212 COG0714 MoxR-like ATPases [Gen 99.0 6.6E-09 1.4E-13 114.3 17.9 166 462-658 26-203 (329)
213 PRK11331 5-methylcytosine-spec 99.0 3.2E-09 6.8E-14 117.6 14.9 165 462-655 177-370 (459)
214 TIGR02329 propionate_PrpR prop 99.0 2.7E-09 5.8E-14 123.0 14.5 215 457-696 209-450 (526)
215 PRK15424 propionate catabolism 99.0 6.1E-09 1.3E-13 119.9 16.6 222 457-696 216-465 (538)
216 TIGR02031 BchD-ChlD magnesium 99.0 8.3E-09 1.8E-13 121.2 17.3 208 487-731 16-260 (589)
217 COG1221 PspF Transcriptional r 99.0 1.6E-09 3.5E-14 118.4 10.4 213 460-698 78-311 (403)
218 KOG1244 Predicted transcriptio 99.0 1.3E-10 2.8E-15 115.3 1.4 53 184-236 277-330 (336)
219 PF07728 AAA_5: AAA domain (dy 99.0 1.8E-10 3.8E-15 110.1 2.3 122 489-634 1-139 (139)
220 TIGR00764 lon_rel lon-related 99.0 2E-08 4.2E-13 118.2 19.7 138 578-729 218-391 (608)
221 PRK11388 DNA-binding transcrip 99.0 1.3E-09 2.8E-14 130.7 10.1 210 458-696 323-554 (638)
222 PRK15429 formate hydrogenlyase 99.0 5.6E-09 1.2E-13 126.0 15.4 212 459-697 375-610 (686)
223 PRK07276 DNA polymerase III su 99.0 2.5E-08 5.4E-13 105.8 18.1 178 468-690 6-199 (290)
224 TIGR02442 Cob-chelat-sub cobal 99.0 1.2E-08 2.6E-13 121.3 17.2 139 577-731 126-306 (633)
225 smart00350 MCM minichromosome 98.9 9.3E-09 2E-13 119.3 15.3 229 460-730 203-505 (509)
226 cd08768 Cdc6_C Winged-helix do 98.9 2.3E-09 4.9E-14 93.5 7.8 84 742-825 1-87 (87)
227 COG3829 RocR Transcriptional r 98.9 2.6E-09 5.6E-14 118.5 9.8 214 455-697 240-480 (560)
228 KOG1970 Checkpoint RAD17-RFC c 98.9 1.2E-08 2.7E-13 112.3 14.3 216 462-693 84-320 (634)
229 cd04719 BAH_Orc1p_animal BAH, 98.9 8.1E-10 1.8E-14 101.7 4.0 87 266-352 19-119 (128)
230 PRK07132 DNA polymerase III su 98.9 7.7E-08 1.7E-12 103.0 18.3 176 471-689 3-185 (299)
231 KOG1973 Chromatin remodeling p 98.9 7E-10 1.5E-14 117.3 2.5 55 181-238 212-269 (274)
232 TIGR00368 Mg chelatase-related 98.9 1.9E-08 4E-13 115.2 14.1 137 577-727 295-497 (499)
233 COG3604 FhlA Transcriptional r 98.9 6.1E-09 1.3E-13 114.0 9.4 212 458-696 221-456 (550)
234 PRK15115 response regulator Gl 98.9 1.1E-08 2.4E-13 117.7 11.9 209 461-696 135-367 (444)
235 PF09079 Cdc6_C: CDC6, C termi 98.9 1.2E-08 2.7E-13 88.4 9.4 81 749-829 1-85 (85)
236 PF00931 NB-ARC: NB-ARC domain 98.8 5.4E-08 1.2E-12 105.0 16.0 165 465-659 1-172 (287)
237 PRK10923 glnG nitrogen regulat 98.8 1.3E-08 2.9E-13 117.8 11.7 211 460-697 138-372 (469)
238 PRK08116 hypothetical protein; 98.8 1.7E-08 3.6E-13 107.2 11.3 141 487-657 114-260 (268)
239 PRK13765 ATP-dependent proteas 98.8 9.1E-08 2E-12 112.1 18.1 137 577-727 226-398 (637)
240 PRK05917 DNA polymerase III su 98.8 1.2E-07 2.6E-12 100.3 17.1 140 474-644 7-154 (290)
241 COG1239 ChlI Mg-chelatase subu 98.8 1.2E-07 2.5E-12 102.9 16.7 158 487-659 38-234 (423)
242 TIGR02915 PEP_resp_reg putativ 98.8 1.5E-08 3.2E-13 116.7 10.6 211 460-697 139-373 (445)
243 TIGR01818 ntrC nitrogen regula 98.8 1.8E-08 3.9E-13 116.5 10.9 210 461-697 135-368 (463)
244 PRK05818 DNA polymerase III su 98.8 1.2E-07 2.6E-12 98.1 15.5 163 486-690 6-192 (261)
245 PF00628 PHD: PHD-finger; Int 98.8 8.8E-10 1.9E-14 85.5 -0.5 47 190-236 1-50 (51)
246 KOG0745 Putative ATP-dependent 98.8 9.3E-08 2E-12 102.5 14.3 187 487-699 226-511 (564)
247 PRK08699 DNA polymerase III su 98.8 6.5E-08 1.4E-12 105.3 13.3 145 486-656 20-184 (325)
248 COG1219 ClpX ATP-dependent pro 98.7 1.8E-07 4E-12 96.8 15.1 218 443-696 63-367 (408)
249 KOG1051 Chaperone HSP104 and r 98.7 1.7E-07 3.7E-12 111.4 16.7 187 444-659 551-786 (898)
250 KOG4299 PHD Zn-finger protein 98.7 2.5E-09 5.3E-14 119.3 1.0 52 188-239 253-307 (613)
251 PF00158 Sigma54_activat: Sigm 98.7 1.2E-08 2.5E-13 100.4 5.6 130 462-619 1-143 (168)
252 PTZ00111 DNA replication licen 98.7 1.6E-06 3.4E-11 103.5 24.4 168 460-652 450-652 (915)
253 PRK12377 putative replication 98.7 4.5E-08 9.7E-13 102.1 9.9 144 468-645 86-236 (248)
254 PHA02244 ATPase-like protein 98.7 1.2E-07 2.6E-12 102.5 13.3 150 461-645 97-262 (383)
255 PF07724 AAA_2: AAA domain (Cd 98.7 8.3E-09 1.8E-13 101.7 4.0 107 487-619 3-129 (171)
256 PRK11361 acetoacetate metaboli 98.7 5.2E-08 1.1E-12 112.5 11.2 209 461-696 144-376 (457)
257 PRK06835 DNA replication prote 98.7 8.3E-08 1.8E-12 104.3 11.6 130 487-645 183-318 (329)
258 PF14516 AAA_35: AAA-like doma 98.7 8.8E-06 1.9E-10 89.4 27.6 195 462-684 13-235 (331)
259 PRK07952 DNA replication prote 98.7 1.4E-07 3E-12 98.1 12.7 129 488-645 100-235 (244)
260 PF05729 NACHT: NACHT domain 98.7 3.7E-07 7.9E-12 89.6 14.7 152 489-659 2-165 (166)
261 COG1220 HslU ATP-dependent pro 98.7 2.1E-06 4.6E-11 89.6 20.5 148 577-732 250-436 (444)
262 PRK09862 putative ATP-dependen 98.7 1.4E-07 3E-12 107.5 13.0 137 577-727 294-490 (506)
263 smart00382 AAA ATPases associa 98.7 7.1E-08 1.5E-12 91.2 9.0 119 487-619 2-125 (148)
264 KOG0741 AAA+-type ATPase [Post 98.6 4.4E-07 9.5E-12 99.5 14.5 153 487-676 538-701 (744)
265 PF14629 ORC4_C: Origin recogn 98.6 1.1E-06 2.3E-11 89.7 16.6 151 667-832 40-203 (203)
266 COG3283 TyrR Transcriptional r 98.6 7.2E-07 1.6E-11 93.6 15.0 208 460-698 204-434 (511)
267 PF12775 AAA_7: P-loop contain 98.6 4.5E-08 9.7E-13 104.0 6.2 161 468-659 18-195 (272)
268 PRK06921 hypothetical protein; 98.6 4.2E-07 9E-12 96.4 13.5 127 487-645 117-255 (266)
269 PF07726 AAA_3: ATPase family 98.6 2.8E-08 6.1E-13 90.9 2.5 119 489-635 1-130 (131)
270 PF14532 Sigma54_activ_2: Sigm 98.5 5.8E-08 1.3E-12 92.6 4.1 132 464-644 2-138 (138)
271 KOG1886 BAH domain proteins [T 98.5 4.6E-08 1E-12 106.7 2.8 98 266-363 67-169 (464)
272 PRK08181 transposase; Validate 98.5 1.8E-06 3.9E-11 91.2 14.3 127 487-645 106-243 (269)
273 PRK13406 bchD magnesium chelat 98.4 3.7E-06 8.1E-11 98.1 16.8 205 487-731 25-252 (584)
274 PRK10365 transcriptional regul 98.4 3.3E-07 7.2E-12 105.3 8.1 208 462-696 141-372 (441)
275 PF13173 AAA_14: AAA domain 98.4 7.9E-07 1.7E-11 83.6 8.6 126 487-649 2-127 (128)
276 smart00249 PHD PHD zinc finger 98.4 1.1E-07 2.4E-12 72.1 2.2 45 190-234 1-47 (47)
277 PF07693 KAP_NTPase: KAP famil 98.4 9.7E-06 2.1E-10 89.2 17.7 181 474-659 6-265 (325)
278 PF01078 Mg_chelatase: Magnesi 98.4 8.1E-08 1.8E-12 95.9 0.5 159 461-647 4-205 (206)
279 KOG1512 PHD Zn-finger protein 98.4 1.2E-07 2.7E-12 94.9 1.5 53 184-238 310-364 (381)
280 COG0606 Predicted ATPase with 98.4 2.4E-06 5.1E-11 94.2 11.3 26 487-512 198-223 (490)
281 smart00763 AAA_PrkA PrkA AAA d 98.3 2.3E-05 4.9E-10 85.2 17.9 55 461-515 52-106 (361)
282 KOG0482 DNA replication licens 98.3 4.6E-05 9.9E-10 83.6 19.6 407 306-805 232-711 (721)
283 PRK06581 DNA polymerase III su 98.3 3.5E-05 7.7E-10 78.2 17.5 172 475-675 4-177 (263)
284 COG1241 MCM2 Predicted ATPase 98.3 3E-06 6.4E-11 98.9 10.7 231 461-730 287-593 (682)
285 KOG1968 Replication factor C, 98.3 1.7E-06 3.6E-11 104.0 8.9 176 489-695 359-538 (871)
286 PTZ00202 tuzin; Provisional 98.3 2.3E-05 5E-10 85.8 16.7 170 459-658 261-435 (550)
287 PF10443 RNA12: RNA12 protein; 98.3 0.00023 5E-09 78.4 24.1 206 465-691 1-281 (431)
288 PRK08939 primosomal protein Dn 98.3 5.9E-06 1.3E-10 89.3 11.6 122 465-619 136-260 (306)
289 PRK06526 transposase; Provisio 98.2 3.5E-06 7.6E-11 88.6 8.6 101 487-619 98-200 (254)
290 COG3284 AcoR Transcriptional a 98.2 1.4E-05 2.9E-10 91.1 12.9 207 463-697 316-541 (606)
291 COG4650 RtcR Sigma54-dependent 98.2 5.7E-05 1.2E-09 77.4 15.5 124 460-602 184-307 (531)
292 COG1484 DnaC DNA replication p 98.1 1E-05 2.2E-10 85.2 10.4 119 465-619 88-208 (254)
293 PF01695 IstB_IS21: IstB-like 98.1 4.6E-06 1E-10 83.0 6.6 101 487-619 47-149 (178)
294 KOG0480 DNA replication licens 98.1 1.7E-05 3.6E-10 89.4 11.4 174 459-658 344-543 (764)
295 PRK14700 recombination factor 98.1 1.6E-05 3.5E-10 83.5 10.2 105 606-729 4-115 (300)
296 PLN03210 Resistant to P. syrin 98.1 0.00011 2.5E-09 94.1 19.8 198 457-688 181-394 (1153)
297 KOG0478 DNA replication licens 98.1 2E-05 4.4E-10 89.4 11.3 136 488-652 463-621 (804)
298 KOG0383 Predicted helicase [Ge 98.0 1.8E-06 3.9E-11 100.3 1.9 55 183-239 42-96 (696)
299 COG5271 MDN1 AAA ATPase contai 98.0 9.8E-05 2.1E-09 90.1 15.6 146 487-659 888-1049(4600)
300 PF13604 AAA_30: AAA domain; P 98.0 4.8E-05 1E-09 77.1 11.1 123 467-618 5-131 (196)
301 PRK05574 holA DNA polymerase I 98.0 0.0013 2.9E-08 72.7 23.7 227 486-764 16-248 (340)
302 PRK09183 transposase/IS protei 98.0 8.3E-06 1.8E-10 86.3 5.5 102 487-619 102-205 (259)
303 PF10923 DUF2791: P-loop Domai 98.0 0.00079 1.7E-08 75.0 21.1 87 451-547 11-109 (416)
304 COG3899 Predicted ATPase [Gene 98.0 7.7E-05 1.7E-09 91.5 14.4 215 462-694 2-266 (849)
305 PHA00729 NTP-binding motif con 97.9 5.1E-05 1.1E-09 77.4 10.0 123 487-656 17-139 (226)
306 KOG0957 PHD finger protein [Ge 97.9 4.4E-06 9.6E-11 90.1 2.2 51 188-238 544-599 (707)
307 PF03969 AFG1_ATPase: AFG1-lik 97.9 1.6E-05 3.5E-10 87.7 5.8 105 486-620 61-168 (362)
308 KOG0955 PHD finger protein BR1 97.9 6.3E-06 1.4E-10 99.6 2.8 84 185-278 216-304 (1051)
309 KOG1245 Chromatin remodeling c 97.8 3E-06 6.4E-11 106.6 -0.7 56 183-238 1103-1159(1404)
310 PRK10536 hypothetical protein; 97.8 0.0001 2.2E-09 76.4 10.2 141 461-624 56-219 (262)
311 PRK04841 transcriptional regul 97.8 0.00035 7.5E-09 88.0 17.1 194 457-683 11-220 (903)
312 COG0464 SpoVK ATPases of the A 97.8 0.00026 5.6E-09 82.6 14.6 176 486-699 17-203 (494)
313 PF00493 MCM: MCM2/3/5 family 97.8 1.6E-06 3.5E-11 95.0 -3.6 146 487-658 57-222 (331)
314 PRK00771 signal recognition pa 97.8 0.0023 5E-08 72.4 20.9 130 447-591 49-189 (437)
315 PRK06585 holA DNA polymerase I 97.8 0.0032 7E-08 69.8 22.0 175 577-776 81-258 (343)
316 PRK08485 DNA polymerase III su 97.8 0.0002 4.4E-09 70.8 10.8 105 581-695 58-174 (206)
317 PRK07452 DNA polymerase III su 97.8 0.00081 1.8E-08 74.0 17.0 176 577-774 61-244 (326)
318 KOG0954 PHD finger protein [Ge 97.7 8E-06 1.7E-10 92.3 0.9 51 186-238 269-322 (893)
319 KOG2170 ATPase of the AAA+ sup 97.7 0.00069 1.5E-08 70.5 14.8 136 462-619 84-224 (344)
320 TIGR01128 holA DNA polymerase 97.7 0.0014 3.1E-08 71.1 18.5 164 577-764 46-213 (302)
321 PRK12723 flagellar biosynthesi 97.7 0.0002 4.4E-09 79.5 11.6 106 487-602 174-281 (388)
322 KOG4323 Polycomb-like PHD Zn-f 97.7 1.1E-05 2.4E-10 88.8 1.6 48 191-238 171-225 (464)
323 KOG0956 PHD finger protein AF1 97.7 2.5E-05 5.3E-10 87.6 3.3 48 190-239 7-59 (900)
324 COG1618 Predicted nucleotide k 97.7 0.00066 1.4E-08 64.4 12.2 28 487-514 5-32 (179)
325 PRK12608 transcription termina 97.6 0.00099 2.1E-08 72.9 15.0 92 487-591 133-234 (380)
326 PRK09376 rho transcription ter 97.6 0.0013 2.8E-08 72.2 15.7 28 487-514 169-196 (416)
327 KOG4443 Putative transcription 97.6 2.2E-05 4.8E-10 88.3 2.0 53 185-237 65-118 (694)
328 PF04665 Pox_A32: Poxvirus A32 97.6 0.0014 3.1E-08 67.7 14.9 150 487-657 13-170 (241)
329 TIGR00767 rho transcription te 97.6 0.00076 1.7E-08 74.3 13.4 101 487-592 168-270 (415)
330 PF12774 AAA_6: Hydrolytic ATP 97.6 0.00051 1.1E-08 71.1 11.4 143 470-656 19-179 (231)
331 cd01128 rho_factor Transcripti 97.6 7.5E-05 1.6E-09 78.2 5.3 101 487-592 16-118 (249)
332 KOG0477 DNA replication licens 97.6 0.0012 2.6E-08 74.5 14.8 172 460-657 449-650 (854)
333 cd01120 RecA-like_NTPases RecA 97.6 0.00051 1.1E-08 66.8 10.7 38 490-534 2-39 (165)
334 PHA02624 large T antigen; Prov 97.6 0.00037 7.9E-09 79.9 10.7 52 470-532 415-466 (647)
335 KOG3347 Predicted nucleotide k 97.6 0.00017 3.7E-09 67.1 6.6 67 487-565 7-73 (176)
336 PHA02774 E1; Provisional 97.6 0.00038 8.2E-09 79.5 10.7 44 468-512 416-459 (613)
337 KOG1051 Chaperone HSP104 and r 97.5 0.00014 3E-09 87.2 7.3 163 462-655 188-361 (898)
338 PF00910 RNA_helicase: RNA hel 97.5 0.00027 5.9E-09 64.0 7.6 26 490-515 1-26 (107)
339 PRK10875 recD exonuclease V su 97.5 0.00048 1E-08 81.2 11.5 125 487-619 167-303 (615)
340 COG2909 MalT ATP-dependent tra 97.5 0.0038 8.2E-08 73.6 18.3 174 487-682 37-230 (894)
341 PF10236 DAP3: Mitochondrial r 97.4 0.0059 1.3E-07 66.4 17.8 41 471-513 9-49 (309)
342 PF09848 DUF2075: Uncharacteri 97.4 0.00065 1.4E-08 75.6 10.3 24 488-511 2-25 (352)
343 PRK13695 putative NTPase; Prov 97.4 0.0004 8.7E-09 69.0 7.7 75 577-658 96-173 (174)
344 COG5271 MDN1 AAA ATPase contai 97.4 0.00097 2.1E-08 81.9 11.4 146 487-658 1543-1704(4600)
345 COG5141 PHD zinc finger-contai 97.4 6.4E-05 1.4E-09 81.3 1.5 82 186-277 191-277 (669)
346 TIGR02012 tigrfam_recA protein 97.4 0.00096 2.1E-08 72.1 10.4 89 482-591 50-147 (321)
347 KOG0481 DNA replication licens 97.3 0.0038 8.3E-08 69.1 14.4 150 461-636 332-507 (729)
348 PF05970 PIF1: PIF1-like helic 97.3 0.0003 6.6E-09 78.4 6.2 45 467-513 4-48 (364)
349 PRK05629 hypothetical protein; 97.3 0.025 5.3E-07 62.0 21.1 198 486-740 5-203 (318)
350 COG1066 Sms Predicted ATP-depe 97.3 0.0015 3.2E-08 71.0 11.0 117 479-615 85-217 (456)
351 cd00983 recA RecA is a bacter 97.3 0.0014 3.1E-08 70.9 11.0 98 478-591 45-147 (325)
352 PRK04296 thymidine kinase; Pro 97.3 0.00031 6.7E-09 70.8 5.5 27 487-513 2-28 (190)
353 PRK14722 flhF flagellar biosyn 97.3 0.0018 3.9E-08 71.5 11.8 26 487-512 137-162 (374)
354 TIGR01447 recD exodeoxyribonuc 97.3 0.0012 2.6E-08 77.7 11.0 125 487-618 160-296 (586)
355 PTZ00494 tuzin-like protein; P 97.3 0.0091 2E-07 65.6 16.6 174 458-658 369-545 (664)
356 cd01121 Sms Sms (bacterial rad 97.3 0.00044 9.5E-09 76.8 6.7 46 480-532 75-120 (372)
357 PF13831 PHD_2: PHD-finger; PD 97.3 4.1E-05 8.9E-10 54.0 -0.9 34 200-235 2-36 (36)
358 TIGR02768 TraA_Ti Ti-type conj 97.2 0.0012 2.6E-08 80.2 10.6 121 465-615 354-474 (744)
359 TIGR01448 recD_rel helicase, p 97.2 0.0011 2.4E-08 80.2 10.2 127 465-619 325-454 (720)
360 PF12780 AAA_8: P-loop contain 97.2 0.0016 3.5E-08 69.0 10.2 175 462-674 10-227 (268)
361 COG1373 Predicted ATPase (AAA+ 97.2 0.0023 5E-08 72.1 11.9 124 489-652 39-162 (398)
362 PF03266 NTPase_1: NTPase; In 97.2 0.00039 8.6E-09 68.4 5.1 67 577-650 95-164 (168)
363 PF06309 Torsin: Torsin; Inte 97.2 0.0016 3.4E-08 59.9 8.5 63 446-514 16-80 (127)
364 TIGR01613 primase_Cterm phage/ 97.2 0.0077 1.7E-07 65.5 15.5 50 464-513 53-102 (304)
365 TIGR02237 recomb_radB DNA repa 97.2 0.0014 2.9E-08 67.2 9.2 99 479-590 4-110 (209)
366 PRK15455 PrkA family serine pr 97.2 0.0005 1.1E-08 78.5 6.3 55 460-514 76-130 (644)
367 PRK13889 conjugal transfer rel 97.2 0.0025 5.5E-08 78.6 12.6 110 488-619 363-472 (988)
368 PRK09361 radB DNA repair and r 97.2 0.0018 3.8E-08 67.2 9.5 47 478-531 14-60 (225)
369 cd01124 KaiC KaiC is a circadi 97.2 0.0014 3.1E-08 65.6 8.6 36 489-531 1-36 (187)
370 PRK11823 DNA repair protein Ra 97.2 0.0012 2.5E-08 75.5 8.8 47 479-532 72-118 (446)
371 COG1485 Predicted ATPase [Gene 97.2 0.00056 1.2E-08 73.1 5.7 105 486-620 64-171 (367)
372 KOG1473 Nucleosome remodeling 97.1 0.00034 7.4E-09 82.9 3.8 59 188-248 344-402 (1414)
373 PF02562 PhoH: PhoH-like prote 97.1 0.0018 3.8E-08 65.5 8.5 28 487-514 19-46 (205)
374 PRK06067 flagellar accessory p 97.1 0.0036 7.8E-08 65.4 11.2 48 477-531 15-62 (234)
375 COG4088 Predicted nucleotide k 97.1 0.0028 6.2E-08 62.4 9.4 28 489-516 3-30 (261)
376 PRK09354 recA recombinase A; P 97.1 0.0028 6.1E-08 69.2 10.4 98 478-591 50-152 (349)
377 cd01122 GP4d_helicase GP4d_hel 97.0 0.0044 9.5E-08 66.3 11.5 79 448-546 3-81 (271)
378 COG3854 SpoIIIAA ncharacterize 97.0 0.0036 7.8E-08 62.8 9.1 41 487-529 137-177 (308)
379 TIGR02688 conserved hypothetic 97.0 0.0046 9.9E-08 68.5 10.9 63 442-510 159-232 (449)
380 PRK08533 flagellar accessory p 97.0 0.0062 1.3E-07 63.3 11.2 50 485-543 22-71 (230)
381 PRK14974 cell division protein 96.9 0.0074 1.6E-07 66.0 12.1 41 487-534 140-180 (336)
382 cd00046 DEXDc DEAD-like helica 96.9 0.0025 5.5E-08 59.6 7.5 26 489-514 2-27 (144)
383 PF13207 AAA_17: AAA domain; P 96.9 0.0009 1.9E-08 61.9 4.2 24 489-512 1-24 (121)
384 PRK08118 topology modulation p 96.9 0.0014 3.1E-08 64.5 5.8 24 489-512 3-26 (167)
385 COG4619 ABC-type uncharacteriz 96.9 0.0068 1.5E-07 58.0 9.8 41 487-535 29-69 (223)
386 PRK10867 signal recognition pa 96.9 0.19 4.2E-06 56.9 23.4 43 487-535 100-142 (433)
387 PF07034 ORC3_N: Origin recogn 96.9 0.04 8.6E-07 60.6 17.5 220 466-694 55-319 (330)
388 PLN02674 adenylate kinase 96.9 0.0061 1.3E-07 63.4 10.4 26 487-512 31-56 (244)
389 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.011 2.3E-07 62.0 12.3 55 478-541 12-66 (237)
390 PRK07914 hypothetical protein; 96.9 0.086 1.9E-06 57.8 20.0 195 487-737 5-202 (320)
391 KOG0479 DNA replication licens 96.9 0.04 8.6E-07 62.3 16.8 167 459-657 300-498 (818)
392 cd01393 recA_like RecA is a b 96.8 0.0063 1.4E-07 63.1 10.3 108 478-591 10-128 (226)
393 PRK12724 flagellar biosynthesi 96.8 0.022 4.9E-07 63.5 14.5 43 487-535 223-265 (432)
394 TIGR03878 thermo_KaiC_2 KaiC d 96.8 0.012 2.5E-07 62.5 11.8 44 481-531 30-73 (259)
395 PF07088 GvpD: GvpD gas vesicl 96.8 0.0039 8.4E-08 67.4 7.8 47 486-542 9-55 (484)
396 TIGR01618 phage_P_loop phage n 96.7 0.0017 3.6E-08 66.5 4.9 22 487-508 12-33 (220)
397 KOG2383 Predicted ATPase [Gene 96.7 0.002 4.2E-08 69.7 5.4 110 486-620 113-234 (467)
398 TIGR02858 spore_III_AA stage I 96.7 0.0016 3.5E-08 69.1 4.5 40 487-534 111-150 (270)
399 TIGR01425 SRP54_euk signal rec 96.7 0.2 4.4E-06 56.4 21.2 41 487-534 100-140 (429)
400 PRK04328 hypothetical protein; 96.7 0.018 3.8E-07 60.8 12.2 49 477-532 13-61 (249)
401 PRK11889 flhF flagellar biosyn 96.7 0.025 5.4E-07 62.3 13.4 62 466-534 217-281 (436)
402 PRK05703 flhF flagellar biosyn 96.7 0.012 2.7E-07 66.7 11.6 41 487-533 221-262 (424)
403 TIGR00959 ffh signal recogniti 96.7 0.4 8.6E-06 54.4 23.5 43 487-535 99-141 (428)
404 TIGR00416 sms DNA repair prote 96.7 0.01 2.2E-07 68.0 10.9 47 479-532 86-132 (454)
405 TIGR03499 FlhF flagellar biosy 96.6 0.016 3.5E-07 62.2 11.8 62 467-533 168-235 (282)
406 COG2842 Uncharacterized ATPase 96.6 0.034 7.3E-07 58.5 13.6 184 487-699 94-282 (297)
407 cd01394 radB RadB. The archaea 96.6 0.01 2.3E-07 61.1 10.0 50 477-533 9-58 (218)
408 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0041 8.9E-08 64.9 7.0 62 478-540 10-71 (235)
409 PF05272 VirE: Virulence-assoc 96.6 0.0057 1.2E-07 61.8 7.7 120 473-643 38-169 (198)
410 cd00984 DnaB_C DnaB helicase C 96.6 0.023 4.9E-07 59.6 12.6 53 483-543 9-61 (242)
411 COG4178 ABC-type uncharacteriz 96.6 0.0046 9.9E-08 71.6 7.6 42 576-620 532-574 (604)
412 KOG1808 AAA ATPase containing 96.6 0.0055 1.2E-07 78.5 8.9 163 469-659 425-601 (1856)
413 PRK13826 Dtr system oriT relax 96.6 0.007 1.5E-07 75.2 9.6 110 487-618 397-506 (1102)
414 PF13245 AAA_19: Part of AAA d 96.6 0.0026 5.7E-08 53.6 4.1 26 487-512 10-35 (76)
415 PF08298 AAA_PrkA: PrkA AAA do 96.6 0.0054 1.2E-07 66.3 7.4 54 460-513 61-114 (358)
416 KOG4658 Apoptotic ATPase [Sign 96.6 0.05 1.1E-06 67.2 16.6 197 463-694 161-367 (889)
417 PF06745 KaiC: KaiC; InterPro 96.5 0.014 3.1E-07 60.5 10.2 97 477-589 9-127 (226)
418 PRK05973 replicative DNA helic 96.5 0.02 4.4E-07 59.3 11.1 53 481-542 58-110 (237)
419 PRK07261 topology modulation p 96.5 0.0057 1.2E-07 60.5 6.5 24 489-512 2-25 (171)
420 PRK14532 adenylate kinase; Pro 96.5 0.0087 1.9E-07 60.1 7.8 24 489-512 2-25 (188)
421 PF00437 T2SE: Type II/IV secr 96.5 0.0054 1.2E-07 65.6 6.6 51 460-514 104-154 (270)
422 TIGR00150 HI0065_YjeE ATPase, 96.4 0.0051 1.1E-07 57.7 5.4 43 466-512 5-47 (133)
423 PRK13808 adenylate kinase; Pro 96.4 0.01 2.3E-07 64.3 8.5 24 489-512 2-25 (333)
424 TIGR02788 VirB11 P-type DNA tr 96.4 0.026 5.6E-07 61.5 11.7 39 471-513 132-170 (308)
425 PF13086 AAA_11: AAA domain; P 96.4 0.003 6.4E-08 65.5 3.9 23 489-511 19-41 (236)
426 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.059 1.3E-06 55.9 13.5 46 479-531 12-57 (229)
427 smart00487 DEXDc DEAD-like hel 96.3 0.016 3.4E-07 57.8 8.8 28 577-604 129-157 (201)
428 COG1116 TauB ABC-type nitrate/ 96.3 0.013 2.9E-07 60.1 8.0 27 487-513 29-55 (248)
429 PRK14709 hypothetical protein; 96.3 0.2 4.4E-06 57.6 18.4 50 464-513 182-231 (469)
430 TIGR03574 selen_PSTK L-seryl-t 96.3 0.017 3.7E-07 60.9 9.1 24 490-513 2-25 (249)
431 TIGR02238 recomb_DMC1 meiotic 96.2 0.025 5.5E-07 61.4 10.2 108 476-591 85-205 (313)
432 COG1419 FlhF Flagellar GTP-bin 96.2 0.026 5.7E-07 62.1 10.1 47 487-536 203-249 (407)
433 PRK10263 DNA translocase FtsK; 96.2 0.014 3.1E-07 72.4 8.9 73 578-654 1141-1217(1355)
434 cd03281 ABC_MSH5_euk MutS5 hom 96.2 0.0041 8.9E-08 63.9 3.7 22 488-509 30-51 (213)
435 TIGR02655 circ_KaiC circadian 96.2 0.025 5.5E-07 65.6 10.5 47 479-532 255-301 (484)
436 cd01428 ADK Adenylate kinase ( 96.1 0.034 7.3E-07 56.0 10.1 23 490-512 2-24 (194)
437 PRK13709 conjugal transfer nic 96.1 0.048 1.1E-06 71.1 13.6 115 487-619 984-1101(1747)
438 PRK00131 aroK shikimate kinase 96.1 0.0049 1.1E-07 60.8 3.8 26 487-512 4-29 (175)
439 COG1124 DppF ABC-type dipeptid 96.1 0.008 1.7E-07 61.3 5.2 45 576-621 158-203 (252)
440 cd01131 PilT Pilus retraction 96.1 0.0062 1.3E-07 61.8 4.5 26 488-513 2-27 (198)
441 PLN03187 meiotic recombination 96.1 0.038 8.2E-07 60.6 10.9 66 476-542 115-180 (344)
442 COG1466 HolA DNA polymerase II 96.1 0.56 1.2E-05 51.8 20.2 141 579-740 76-218 (334)
443 PRK05800 cobU adenosylcobinami 96.1 0.011 2.4E-07 58.4 6.0 112 489-619 3-125 (170)
444 PRK06696 uridine kinase; Valid 96.1 0.015 3.2E-07 60.3 7.3 62 464-535 2-63 (223)
445 COG4608 AppF ABC-type oligopep 96.0 0.015 3.2E-07 60.6 6.9 116 487-620 39-170 (268)
446 PRK12727 flagellar biosynthesi 96.0 0.032 6.8E-07 63.9 10.1 27 487-513 350-376 (559)
447 PRK14712 conjugal transfer nic 96.0 0.051 1.1E-06 70.0 12.9 114 487-619 852-969 (1623)
448 PF00448 SRP54: SRP54-type pro 96.0 0.043 9.3E-07 55.5 10.1 139 488-646 2-152 (196)
449 COG2874 FlaH Predicted ATPases 96.0 0.093 2E-06 52.6 11.9 145 476-635 17-183 (235)
450 COG2804 PulE Type II secretory 96.0 0.019 4.1E-07 64.7 7.9 44 464-514 242-285 (500)
451 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.018 3.9E-07 55.8 6.7 121 488-619 3-137 (159)
452 TIGR01360 aden_kin_iso1 adenyl 95.9 0.02 4.4E-07 57.2 7.5 25 488-512 4-28 (188)
453 cd03216 ABC_Carb_Monos_I This 95.9 0.0089 1.9E-07 58.6 4.7 112 487-619 26-141 (163)
454 cd03223 ABCD_peroxisomal_ALDP 95.9 0.023 4.9E-07 55.9 7.5 26 487-512 27-52 (166)
455 PRK07078 hypothetical protein; 95.9 0.73 1.6E-05 56.0 21.5 68 716-797 657-726 (759)
456 PF13238 AAA_18: AAA domain; P 95.9 0.0066 1.4E-07 56.4 3.4 22 490-511 1-22 (129)
457 PRK09519 recA DNA recombinatio 95.9 0.046 1E-06 65.7 11.0 92 479-591 51-152 (790)
458 cd01129 PulE-GspE PulE/GspE Th 95.9 0.029 6.2E-07 59.6 8.5 27 487-513 80-106 (264)
459 cd03115 SRP The signal recogni 95.8 0.11 2.3E-06 51.4 12.0 39 489-534 2-40 (173)
460 PF13671 AAA_33: AAA domain; P 95.8 0.0064 1.4E-07 57.9 3.0 23 490-512 2-24 (143)
461 PRK13894 conjugal transfer ATP 95.8 0.037 8.1E-07 60.3 9.0 36 473-512 138-173 (319)
462 PRK03839 putative kinase; Prov 95.8 0.0077 1.7E-07 60.1 3.4 24 489-512 2-25 (180)
463 PF13481 AAA_25: AAA domain; P 95.7 0.021 4.5E-07 57.5 6.5 58 487-546 32-92 (193)
464 PF00154 RecA: recA bacterial 95.7 0.06 1.3E-06 58.3 10.3 96 476-592 41-146 (322)
465 cd03228 ABCC_MRP_Like The MRP 95.7 0.014 3.1E-07 57.6 5.1 26 487-512 28-53 (171)
466 PRK00625 shikimate kinase; Pro 95.7 0.0087 1.9E-07 59.2 3.5 24 489-512 2-25 (173)
467 TIGR02760 TraI_TIGR conjugativ 95.7 0.081 1.8E-06 70.8 13.4 127 466-619 432-568 (1960)
468 KOG0925 mRNA splicing factor A 95.7 0.16 3.5E-06 56.2 13.3 25 487-511 62-86 (699)
469 TIGR01359 UMP_CMP_kin_fam UMP- 95.7 0.0079 1.7E-07 60.1 3.3 23 490-512 2-24 (183)
470 COG1936 Predicted nucleotide k 95.7 0.0064 1.4E-07 58.7 2.3 23 489-512 2-24 (180)
471 PF05707 Zot: Zonular occluden 95.6 0.029 6.3E-07 56.7 7.2 54 577-635 79-138 (193)
472 PRK02496 adk adenylate kinase; 95.6 0.039 8.5E-07 55.2 8.1 23 490-512 4-26 (184)
473 PTZ00035 Rad51 protein; Provis 95.6 0.064 1.4E-06 59.0 10.3 63 476-539 107-169 (337)
474 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.021 4.6E-07 55.5 5.9 111 487-619 25-139 (157)
475 PRK06547 hypothetical protein; 95.6 0.016 3.4E-07 57.4 4.8 26 487-512 15-40 (172)
476 TIGR02236 recomb_radA DNA repa 95.6 0.034 7.4E-07 60.7 8.0 65 476-541 84-148 (310)
477 PLN03186 DNA repair protein RA 95.6 0.077 1.7E-06 58.3 10.6 65 476-541 112-176 (342)
478 cd03214 ABC_Iron-Siderophores_ 95.5 0.024 5.1E-07 56.6 6.0 115 487-620 25-158 (180)
479 PF00270 DEAD: DEAD/DEAH box h 95.5 0.049 1.1E-06 53.3 8.2 23 487-509 14-36 (169)
480 PF08433 KTI12: Chromatin asso 95.5 0.013 2.7E-07 62.3 4.2 106 489-619 3-108 (270)
481 TIGR00064 ftsY signal recognit 95.5 0.25 5.5E-06 52.7 14.1 42 487-535 72-113 (272)
482 KOG0922 DEAH-box RNA helicase 95.5 0.02 4.4E-07 65.8 6.0 119 487-620 66-205 (674)
483 COG2884 FtsE Predicted ATPase 95.5 0.024 5.3E-07 55.5 5.7 27 487-513 28-54 (223)
484 PRK13947 shikimate kinase; Pro 95.5 0.011 2.4E-07 58.3 3.4 24 489-512 3-26 (171)
485 cd03283 ABC_MutS-like MutS-lik 95.5 0.028 6.1E-07 57.0 6.4 25 487-511 25-49 (199)
486 PF00406 ADK: Adenylate kinase 95.5 0.028 6.1E-07 54.2 6.2 78 492-588 1-84 (151)
487 cd03247 ABCC_cytochrome_bd The 95.5 0.025 5.3E-07 56.3 5.9 26 487-512 28-53 (178)
488 TIGR01420 pilT_fam pilus retra 95.5 0.015 3.2E-07 64.4 4.7 26 487-512 122-147 (343)
489 COG0541 Ffh Signal recognition 95.5 2.3 4.9E-05 47.5 21.1 81 447-534 53-140 (451)
490 PLN02200 adenylate kinase fami 95.4 0.047 1E-06 56.9 8.0 26 487-512 43-68 (234)
491 cd03222 ABC_RNaseL_inhibitor T 95.4 0.029 6.2E-07 55.8 6.1 26 487-512 25-50 (177)
492 cd03246 ABCC_Protease_Secretio 95.4 0.026 5.6E-07 55.9 5.8 26 487-512 28-53 (173)
493 cd00464 SK Shikimate kinase (S 95.4 0.012 2.6E-07 56.7 3.4 24 489-512 1-24 (154)
494 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.018 3.9E-07 55.2 4.4 26 487-512 26-51 (144)
495 PRK14530 adenylate kinase; Pro 95.4 0.015 3.3E-07 59.8 4.2 26 487-512 3-28 (215)
496 COG1102 Cmk Cytidylate kinase 95.4 0.012 2.6E-07 56.0 3.0 23 490-512 3-25 (179)
497 PRK06995 flhF flagellar biosyn 95.4 0.089 1.9E-06 60.2 10.6 27 487-513 256-282 (484)
498 cd02019 NK Nucleoside/nucleoti 95.4 0.016 3.5E-07 47.8 3.4 22 490-511 2-23 (69)
499 PF01583 APS_kinase: Adenylyls 95.4 0.018 3.9E-07 55.6 4.2 41 487-534 2-42 (156)
500 TIGR02239 recomb_RAD51 DNA rep 95.4 0.095 2.1E-06 57.1 10.4 60 478-538 87-146 (316)
No 1
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-65 Score=566.84 Aligned_cols=654 Identities=39% Similarity=0.586 Sum_probs=524.0
Q ss_pred cccccceeeeeeCCCccccCCccccccccCCCCCCc---cccccccceeecccccccccCccCCCccccccCCCCCCCCC
Q 003175 149 KKRRVYYKKVVYDDGEFEVGDDVYVKRREDASSDEE---DPEVEECRICFRAGRSVMLECDDCLGGFHLKCLKPPLKEVP 225 (842)
Q Consensus 149 p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~C~~C~~~~~~~~l~Cd~C~~~~H~~C~~p~l~~~p 225 (842)
|.+|..+.+.......++.+++.|..+......... ......|..|..+..+.+ .||+.|..+|+..++
T Consensus 99 ~~~~~~~~~l~~~~~~f~~~~~~ylt~~~~~~~~~~~~~v~~~~~es~w~~~~~~~~--------~~~~e~~~~k~v~i~ 170 (767)
T KOG1514|consen 99 PDKRKLDVKLEFYEKKFEIGDNLYLTRELSEAKLESFIRVGQISDESQWNDSSIDKI--------RYICEPTAEKFVPIN 170 (767)
T ss_pred cchhhccccceeccccccccchhhhhhhhhhhhhcccccccccccccccccccchhh--------eeecCCCCCCceecc
Confidence 445555666666667777777766554443332222 223345777776654333 899999999999999
Q ss_pred CCCcccccccccccCcc--ccCCCCCCCCcccccccccccchhhhhhhhhceeeccCCceEEEEEeecCCcccccCCCCC
Q 003175 226 EGEWVCEFCEARKLGKK--IELPKPPEGKKRVRTMREKLLSSDLWAANIQSMWKEVDGNYWCRVFWYMIPEETAAGRQPH 303 (842)
Q Consensus 226 ~~~W~C~~C~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~g~~~~~~~w~~~peEt~~~~~~~ 303 (842)
.++|.|..|..+..... ...+..|...+...+..+.......|...+...|.. -+|-++...+
T Consensus 171 ~~~~~~~~~e~~~s~~~e~~~~~~~p~~kk~~k~~~~~~~~d~~~~~~~~~~~r~---------------~d~t~~~ds~ 235 (767)
T KOG1514|consen 171 IVRLICRVKEVEPSQSSEYLKSPSSPEKKKSAKTGKEKKSADDDVANGIDPSDRG---------------TDTTHPTDSS 235 (767)
T ss_pred ceeEEEeecccCcccchhhhcCCCCccccccccccCcccCcchhhhcccchhccc---------------cccCCCCCch
Confidence 99999999987765543 355566666655555566555555544444444432 2334455566
Q ss_pred cccccccccCCccccccchhccceeeeCcccccccccCCCCEEEEeeEEecCccceeecccCCccchhhccCchhhhhcc
Q 003175 304 NLRRELYRTNDFANIEMESIIRHCSVMSPKDFVKANDQGDDIFLCEYEYDIHWHSFKRIADIDKEEEVEDADSDEDWKSS 383 (842)
Q Consensus 304 ~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~~~~~~~~~~~C~~~y~~~~~~fk~i~~~~~~~~~e~~~~~~~~~~~ 383 (842)
....+.+++..++.+.+++++.++.+-.++........+.+.|+|++.++..|-.+++++.-.+...++. .++.++..
T Consensus 236 ~~~~~~~is~d~~p~~~e~~~~~~~~~~~kk~s~s~~~g~~~~~~~~~~ei~~~~~sR~a~~~~~~~~e~--~d~ed~~~ 313 (767)
T KOG1514|consen 236 KIKQKRRISNDYEPIEEEEVLSEENGKEPKKTSVSRVDGRENFLKESNPEISKVSKSRGAEGADFFGDED--SDQEDNGN 313 (767)
T ss_pred hhHHhhhhhccccchhhhhcccccccCCccccccccccCCcccccCCcccccccchhccccccccccccc--cchhhccC
Confidence 6778889999999999999999999888888887777889999999999999999999886654222222 33333322
Q ss_pred ccCCCCCccccccccccCCCCCCCCCCcc--ccccCCc--cccccccccccccccCcccccCcc---cHHHHHHHhcccc
Q 003175 384 KAADSDTDEDMEFEDEDGKHLHTGPSPAH--ELAANSQ--RGRFFGLQKIGRKRIPEHVRCHKQ---TELERAKATLLLA 456 (842)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~~~~~L~~~ 456 (842)
...+.++....+.... ..++++..+... ...+++| .++...++..+.......+..+++ ..++.+++.|+.+
T Consensus 314 ~~~~I~d~~~~~~e~~-tp~~~~r~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~r~~S~l~~ara~Lhls 392 (767)
T KOG1514|consen 314 GKPEIDDSDTKENEKQ-TPPFRTRRSSTKSYNRRASTPSRTGRSQPLQKTDLESRLDLVGLHQQRSASELSKARARLHLS 392 (767)
T ss_pred CCcccCccchhhhccC-CCCccccccccccccccccCCccccccCcccccccccchhccchhhhhhhhHHHHHHHHhHHh
Confidence 1111111111111111 111222111111 1123344 233344455555555555666666 8999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCCh
Q 003175 457 TLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASP 536 (842)
Q Consensus 457 ~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~ 536 (842)
.+|+.|+|||.|+.+|+.|++.++.. ...+.++||+|.||||||++|+.|++.|......+++|.|.|++|||+.+.++
T Consensus 393 ~vp~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~ 471 (767)
T KOG1514|consen 393 AVPESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASP 471 (767)
T ss_pred hccccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCH
Confidence 99999999999999999999999988 33578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEE
Q 003175 537 ENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGI 616 (842)
Q Consensus 537 ~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~ 616 (842)
.++|..||+.+.|+++++..+++.|..+|... +....++||+|||+|.|.+++|++||++|+|+..++++++||++
T Consensus 472 ~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~----k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~I 547 (767)
T KOG1514|consen 472 REIYEKIWEALSGERVTWDAALEALNFRFTVP----KPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAI 547 (767)
T ss_pred HHHHHHHHHhcccCcccHHHHHHHHHHhhccC----CCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEe
Confidence 99999999999999999999999999999833 34568899999999999999999999999999999999999999
Q ss_pred eCCCCCccccch-hhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 003175 617 ANTMDLPEKLLP-RISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICRRAAEI 695 (842)
Q Consensus 617 tn~~dl~~~l~~-~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~ 695 (842)
+|++|++++++. ++.||++.++|.|.||+++|+++|+..||.+...|++++++++++++++.+||+|+|+++|++|+++
T Consensus 548 aNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Ei 627 (767)
T KOG1514|consen 548 ANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEI 627 (767)
T ss_pred cccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999999876 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHHHHHcCCcceeHHHHHHHHHH
Q 003175 696 ADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYELYKTGMGETNFEKLAMTVSS 775 (842)
Q Consensus 696 A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~~~~~g~~~~~~~~v~~~y~~ 775 (842)
|+.+..+ ........|++.||.+|+++++.+.+...|++|+.++++||.|++.++.++|..+.+|.+||..+..
T Consensus 628 a~~~~~~------~k~~~~q~v~~~~v~~Ai~em~~~~~~~~i~glS~~~k~fl~ai~~e~~~~g~~e~~~~~v~~~~~~ 701 (767)
T KOG1514|consen 628 AEERNVK------GKLAVSQLVGILHVMEAINEMLASPYIKALKGLSFLQKIFLTAIVAETEGTGLEEATLDEVYSEVVT 701 (767)
T ss_pred hhhhccc------ccccccceeehHHHHHHHHHHhhhhHHHHhcchHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 9877431 1223457899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHH--HHhcccceEEecCCCCCCceEEEEecCHHHHHHHHhcCCCCchhh
Q 003175 776 LCTSNGEIFPSWDALLRVG--CKLGECRIILCEPGSRHRLQKLQLNFPSDDVAFALKDSKDLPWLA 839 (842)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~--~~L~~~~li~~~~g~~~r~~~i~l~~~~~dv~~al~~~~~l~~l~ 839 (842)
+|+.++...+..+....+| +.|+..+|++...+...+.++|.|+++.+|+..||++|.+++|+.
T Consensus 702 i~~~~~~~~~~~~~~~~i~~~~~l~~e~l~l~~~~~~~r~~~v~L~~~~~ei~~A~~~d~e~~~~~ 767 (767)
T KOG1514|consen 702 ICRKNGGPKPSSDIAKVICGVNDLGSERLVLVEPEENDRSLRVKLNIPSDEIKYALKDDEELANMA 767 (767)
T ss_pred HHHhcCCCCccHHHHHHHHhhhhccccceEEEecCccchhhhhhcCCCHHHHHHHhhcchhhccCC
Confidence 9999998888888877777 889999999999889999999999999999999999999999874
No 2
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=100.00 E-value=6.2e-49 Score=444.91 Aligned_cols=373 Identities=33% Similarity=0.548 Sum_probs=318.0
Q ss_pred ccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 003175 443 QTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRP 522 (842)
Q Consensus 443 ~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~ 522 (842)
..++..|++.|+++|+|+.|+|||+|+++|..+|..++.+.. +++++||+|+||||||++++.|+++|........++.
T Consensus 738 ~~p~~~A~rvL~~DYVPD~LPhREeEIeeLasfL~paIkgsg-pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~ 816 (1164)
T PTZ00112 738 TDPTDKAIRMMQLDVVPKYLPCREKEIKEVHGFLESGIKQSG-SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPS 816 (1164)
T ss_pred CChHHHHHHHcCcccCCCcCCChHHHHHHHHHHHHHHHhcCC-CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCC
Confidence 356789999999999999999999999999999999998654 3456789999999999999999999987665666677
Q ss_pred ceEEEEecccCCChHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhh
Q 003175 523 YCFVEVNGLKLASPENIYRVIYEALSGHRVS-WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNIL 601 (842)
Q Consensus 523 ~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll 601 (842)
+.+++|||+.+.++..+|..|++++.+.... .......|..+|..... ..+...||||||||.|....|++||+||
T Consensus 817 f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k---~~r~v~IIILDEID~L~kK~QDVLYnLF 893 (1164)
T PTZ00112 817 FNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKK---DNRNVSILIIDEIDYLITKTQKVLFTLF 893 (1164)
T ss_pred ceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhc---ccccceEEEeehHhhhCccHHHHHHHHH
Confidence 8999999999999999999999999665432 12234556666654321 2235679999999999998899999999
Q ss_pred cCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc-ccCcHHHHHHHHHHHHHHhc
Q 003175 602 DWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI-EAFEKQAIEFASRKVAAISG 680 (842)
Q Consensus 602 ~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~-~~~~~~~l~~ia~~~~~~~G 680 (842)
+|.....++|+|||++|.+++++.++++++|||...+|.|+||+.+|+.+||..|+... +.++++++++||++++..+|
T Consensus 894 R~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SG 973 (1164)
T PTZ00112 894 DWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSG 973 (1164)
T ss_pred HHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCC
Confidence 99887788999999999999999999999999998789999999999999999999854 47999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHHHHHcC
Q 003175 681 DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYELYKTG 760 (842)
Q Consensus 681 d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~~~~~g 760 (842)
|+|+||++|++|++++. ...|+.+||.+|+.+++.+...+.|..||.|++++|+|++.++...+
T Consensus 974 DARKALDILRrAgEike----------------gskVT~eHVrkAleeiE~srI~e~IktLPlHqKLVLlALIlLlk~tg 1037 (1164)
T PTZ00112 974 DIRKALQICRKAFENKR----------------GQKIVPRDITEATNQLFDSPLTNAINYLPWPFKMFLTCLIVELRMLN 1037 (1164)
T ss_pred HHHHHHHHHHHHHhhcC----------------CCccCHHHHHHHHHHHHhhhHHHHHHcCCHHHHHHHHHHHHHHhhcC
Confidence 99999999999998632 24799999999999999999999999999999999999998886667
Q ss_pred CcceeHHHHHHHHHHHHh----hcCCCCCCHHHHHHHHHHhcccceEEecCCC--------------------------C
Q 003175 761 MGETNFEKLAMTVSSLCT----SNGEIFPSWDALLRVGCKLGECRIILCEPGS--------------------------R 810 (842)
Q Consensus 761 ~~~~~~~~v~~~y~~~~~----~~~~~~~~~~~~~~~~~~L~~~~li~~~~g~--------------------------~ 810 (842)
...+++++||++|..+|+ ..|..+.+. .+..++..|..+|||.++.+. .
T Consensus 1038 ~~~i~TGEVYerYk~Lce~~Gk~iGv~plTq-RV~d~L~eL~~LGIIl~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1116 (1164)
T PTZ00112 1038 DFIIPYKKVLNRYKVLVETSGKYIGMCSNNE-LFKIMLDKLVKMGILLIRPYIPLESLAKNKNKEALLGFNESSKKNANE 1116 (1164)
T ss_pred CCceeHHHHHHHHHHHHHhhhhhcCCCCcHH-HHHHHHHHHHhcCeEEecCCCchhhhhcccchhhhhcccchhccccCc
Confidence 667999999999999999 555677777 888999999999999875432 0
Q ss_pred C----Cce------------EEEEecCHHHHHHHHhcCCCCc
Q 003175 811 H----RLQ------------KLQLNFPSDDVAFALKDSKDLP 836 (842)
Q Consensus 811 ~----r~~------------~i~l~~~~~dv~~al~~~~~l~ 836 (842)
+ +++ -+.|+|+...|..||..|+++.
T Consensus 1117 ~~k~~~~~v~~~i~~~~gd~g~~~~~~~~~~~tal~~d~~~~ 1158 (1164)
T PTZ00112 1117 TSKSTRTQVSAEIDKESGDMGLELNVETQLIITALMKDAECS 1158 (1164)
T ss_pred cccccccccchhhhhhccccceeeeccHhHHHHHHhhCHhHH
Confidence 1 111 1568889999999999998763
No 3
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.8e-44 Score=378.25 Aligned_cols=375 Identities=30% Similarity=0.441 Sum_probs=322.2
Q ss_pred cHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCc
Q 003175 444 TELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPY 523 (842)
Q Consensus 444 ~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~ 523 (842)
....+..+.|..++.|..++|||.|+..+..|+...+.... ++++|++|.||||||.+...+...+..+... +
T Consensus 134 e~~~~~~~~l~~t~~p~~l~gRe~e~~~v~~F~~~hle~~t--~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-----~ 206 (529)
T KOG2227|consen 134 EISEQRSESLLNTAPPGTLKGRELEMDIVREFFSLHLELNT--SGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-----P 206 (529)
T ss_pred HHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHhhhhccc--CcceEeeCCCCcchHHHHHHHHHhhhhhccc-----c
Confidence 35567788899999999999999999999999999998875 8999999999999999999999998876533 6
Q ss_pred eEEEEecccCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHh
Q 003175 524 CFVEVNGLKLASPENIYRVIYEALSGHR---VSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNI 600 (842)
Q Consensus 524 ~~v~in~~~~~s~~~~~~~i~~~l~g~~---~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~l 600 (842)
..|||||+.+..+..+|..|...+.... ....+....+...+... ..+.||++||+|+|.++.+.+||.+
T Consensus 207 ~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~-------k~~~llVlDEmD~L~tr~~~vLy~l 279 (529)
T KOG2227|consen 207 VTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQS-------KFMLLLVLDEMDHLITRSQTVLYTL 279 (529)
T ss_pred eeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcc-------cceEEEEechhhHHhhcccceeeee
Confidence 7899999999999999999988773221 12233344555554332 2689999999999999999999999
Q ss_pred hcCCCCCCCcEEEEEEeCCCCCccccchhhhccCC--ceeEEecCCCHHHHHHHHHHHhcCcc--cCcHHHHHHHHHHHH
Q 003175 601 LDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMG--VQRLCFGPYNHQQLQEIISSRLKGIE--AFEKQAIEFASRKVA 676 (842)
Q Consensus 601 l~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~--~~~i~f~p~~~~e~~~Il~~~l~~~~--~~~~~~l~~ia~~~~ 676 (842)
|+|+..+++++++||++|.+|+.++++++|..|+. ...+.|+||+.+|+.+||++++.... .+-+.+++++|++++
T Consensus 280 Fewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKva 359 (529)
T KOG2227|consen 280 FEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVA 359 (529)
T ss_pred hhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhc
Confidence 99999999999999999999999999999999664 48899999999999999999998765 667789999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHHhhhccCC---CcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHH
Q 003175 677 AISGDARRALEICRRAAEIADYRIKKQTSNK---NSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMV 753 (842)
Q Consensus 677 ~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~---~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~ 753 (842)
+.+||+|+|+++|++|+++|+.+.+...... .........|.++||..+++.+.+++......+|+.+++++|+.++
T Consensus 360 a~SGDlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~~~s~~slplqqkiilctl~ 439 (529)
T KOG2227|consen 360 APSGDLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPSARSRESLPLQQKIILCTLV 439 (529)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccChhhhhhhhcCcccchhHHHHH
Confidence 9999999999999999999998866542221 1122234788999999999999999888877799999999999998
Q ss_pred HHHHHcCCcceeHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhcccceEEecCCCCCCceEEEEecCHHHHHHHHhcCC
Q 003175 754 YELYKTGMGETNFEKLAMTVSSLCTSNGEIFPSWDALLRVGCKLGECRIILCEPGSRHRLQKLQLNFPSDDVAFALKDSK 833 (842)
Q Consensus 754 ~~~~~~g~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~~li~~~~g~~~r~~~i~l~~~~~dv~~al~~~~ 833 (842)
.++.... ..++++++|+.|...|....+.+....+|..++..|+.+||+-......++.++|.|.|+.+||+.||.|..
T Consensus 440 ~l~r~~k-kd~s~~eL~e~Y~k~C~~~~I~~ld~tEF~~i~~ilet~gil~l~~~k~~kl~kv~l~vde~~i~~Al~D~~ 518 (529)
T KOG2227|consen 440 LLIRGNK-KDVSIAELYEAYLKACQKREIAPLDRTEFLSICDILETQGILRLRRKKEPKLKKVVLQVDEDDIMRALSDKA 518 (529)
T ss_pred HHHhccc-ccccHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHhhhHHHHhhhcCCccceEEEecchHHHHHHHhHHH
Confidence 8764333 578999999999999999999999999999999999999998876666789999999999999999998754
No 4
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-42 Score=378.18 Aligned_cols=353 Identities=28% Similarity=0.386 Sum_probs=311.9
Q ss_pred HHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEE
Q 003175 447 ERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFV 526 (842)
Q Consensus 447 ~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v 526 (842)
...++.|.++++|+.|++|+.|++++..+|..++.++. +.+++|||+||||||++++.+++++...... ..++
T Consensus 4 ~~n~~vl~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~--p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~-----~~~~ 76 (366)
T COG1474 4 FKNKDVLLEDYIPEELPHREEEINQLASFLAPALRGER--PSNIIIYGPTGTGKTATVKFVMEELEESSAN-----VEVV 76 (366)
T ss_pred cccccccCCCCCcccccccHHHHHHHHHHHHHHhcCCC--CccEEEECCCCCCHhHHHHHHHHHHHhhhcc-----CceE
Confidence 34567899999999999999999999999999999986 6679999999999999999999999976543 3389
Q ss_pred EEecccCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcC
Q 003175 527 EVNGLKLASPENIYRVIYEALSGHR---VSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDW 603 (842)
Q Consensus 527 ~in~~~~~s~~~~~~~i~~~l~g~~---~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~ 603 (842)
||||..+.++..++..|++.+.+.. .+..+.++.+.+.+.. .+...||+|||+|.|..+.+++||+|+++
T Consensus 77 yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~-------~~~~~IvvLDEid~L~~~~~~~LY~L~r~ 149 (366)
T COG1474 77 YINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK-------KGKTVIVILDEVDALVDKDGEVLYSLLRA 149 (366)
T ss_pred EEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh-------cCCeEEEEEcchhhhccccchHHHHHHhh
Confidence 9999999999999999999885432 3456667777777754 24779999999999999988999999999
Q ss_pred CCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc---ccCcHHHHHHHHHHHHHHhc
Q 003175 604 PTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI---EAFEKQAIEFASRKVAAISG 680 (842)
Q Consensus 604 ~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~---~~~~~~~l~~ia~~~~~~~G 680 (842)
......+|++|+++|++++.+.+++++.|+++...|.|+||+.+|+.+||..|++.. +.++++++++|+..++..+|
T Consensus 150 ~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 150 PGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred ccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc
Confidence 987789999999999999999999999999999889999999999999999999842 58999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHHHHHcC
Q 003175 681 DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYELYKTG 760 (842)
Q Consensus 681 d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~~~~~g 760 (842)
|+|+|+++|+.|+++|+.+ +...|+.+|+..|..++......+.++.|+.+++++|.+++...
T Consensus 230 DAR~aidilr~A~eiAe~~-------------~~~~v~~~~v~~a~~~~~~~~~~~~~~~L~~~~ki~L~~i~~~~---- 292 (366)
T COG1474 230 DARKAIDILRRAGEIAERE-------------GSRKVSEDHVREAQEEIERDVLEEVLKTLPLHQKIVLLAIVELT---- 292 (366)
T ss_pred cHHHHHHHHHHHHHHHHhh-------------CCCCcCHHHHHHHHHHhhHHHHHHHHHcCCHhHHHHHHHHHHhc----
Confidence 9999999999999999987 46899999999998888888888999999999999999998753
Q ss_pred CcceeHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhcccceEEe---cCCCCCCceEEEEecCHHHHHHHHhcCCC
Q 003175 761 MGETNFEKLAMTVSSLCTSNGEIFPSWDALLRVGCKLGECRIILC---EPGSRHRLQKLQLNFPSDDVAFALKDSKD 834 (842)
Q Consensus 761 ~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~~li~~---~~g~~~r~~~i~l~~~~~dv~~al~~~~~ 834 (842)
..++.+++|+.|..+|+..+. +...+..++..|..+|+|.. ..|.+|++..+++..+++.+..++..+..
T Consensus 293 -~~~~~~~~y~~y~~~~~~~~~---~~~~~~~ii~~L~~lgiv~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~ 365 (366)
T COG1474 293 -VEISTGELYDVYESLCERLRT---SQRRFSDIISELEGLGIVSASLISRGERGRTREISLDLDPEVIREILKLDLR 365 (366)
T ss_pred -CCCChHHHHHHHHHHHhhhCc---hHHHHHHHHHHHHhcCeEEeeeccCCCcCceeEeeecCCHHHHHHHHHhhhc
Confidence 668899999999999998876 66677888888888888875 46788999999999999888888876543
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=100.00 E-value=5.6e-41 Score=378.77 Aligned_cols=366 Identities=25% Similarity=0.343 Sum_probs=314.1
Q ss_pred HHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceE
Q 003175 446 LERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCF 525 (842)
Q Consensus 446 ~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~ 525 (842)
+.+.+..|.++++|+.|+||++|+++|..++...+.+.. +.+++|+|+||||||++++.+++++.... +.+.+
T Consensus 16 ~~~~~~~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~--~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~ 88 (394)
T PRK00411 16 IFKDEEVLEPDYVPENLPHREEQIEELAFALRPALRGSR--PLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVVY 88 (394)
T ss_pred eeCChhhCCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCC--CCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEE
Confidence 556788899999999999999999999999999887654 67899999999999999999999987542 23789
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCC-----CCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccc-cCChHHHHH
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHR-----VSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLV-TRNQSVLYN 599 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~-----~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~-~~~~~~L~~ 599 (842)
++|||....+...++..|+.++.+.. .+..+....+.+.+.. .+.+.||+|||+|.|. ...++.|+.
T Consensus 89 v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~viviDE~d~l~~~~~~~~l~~ 161 (394)
T PRK00411 89 VYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDE-------RDRVLIVALDDINYLFEKEGNDVLYS 161 (394)
T ss_pred EEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh-------cCCEEEEEECCHhHhhccCCchHHHH
Confidence 99999999999999999999987632 2344555555554432 2467999999999998 445788999
Q ss_pred hhcCCC-CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc---ccCcHHHHHHHHHHH
Q 003175 600 ILDWPT-KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI---EAFEKQAIEFASRKV 675 (842)
Q Consensus 600 ll~~~~-~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~---~~~~~~~l~~ia~~~ 675 (842)
++++.. ....++.||+++|..++.+.+++++.+|+....|.|+||+.+++.+||+.+++.. ..+++++++++++.+
T Consensus 162 l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~ 241 (394)
T PRK00411 162 LLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLT 241 (394)
T ss_pred HHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHH
Confidence 988653 3345899999999998888899999999987789999999999999999998642 378999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHH
Q 003175 676 AAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYE 755 (842)
Q Consensus 676 ~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~ 755 (842)
++..||+|.|+++|+.|+..|..+ +...|+.+||..|+.++..+...+.+.+|+.+++++|+||+..
T Consensus 242 ~~~~Gd~r~a~~ll~~a~~~a~~~-------------~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 242 AREHGDARVAIDLLRRAGLIAERE-------------GSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHc-------------CCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 888999999999999999998865 3568999999999999987777888999999999999999986
Q ss_pred HHHcCCcceeHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhcccceEEe---cCCCCCCceEEEEecCHHHHHHHHhcC
Q 003175 756 LYKTGMGETNFEKLAMTVSSLCTSNGEIFPSWDALLRVGCKLGECRIILC---EPGSRHRLQKLQLNFPSDDVAFALKDS 832 (842)
Q Consensus 756 ~~~~g~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~~li~~---~~g~~~r~~~i~l~~~~~dv~~al~~~ 832 (842)
... +...++++++++.|..+|+..+..+.++..+..++..|...|||.. ..|++||++.|+|++++++|.++|.++
T Consensus 309 ~~~-~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~ 387 (394)
T PRK00411 309 LKK-GGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSYDPEDVLERLLED 387 (394)
T ss_pred Hhc-CCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence 533 4456899999999999999999988899999999999999999985 357889999999999999999999999
Q ss_pred CCCchhh
Q 003175 833 KDLPWLA 839 (842)
Q Consensus 833 ~~l~~l~ 839 (842)
..++.|+
T Consensus 388 ~~~~~~~ 394 (394)
T PRK00411 388 YILKRLK 394 (394)
T ss_pred hhhhhcC
Confidence 8776653
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=100.00 E-value=1.2e-39 Score=364.38 Aligned_cols=347 Identities=23% Similarity=0.324 Sum_probs=294.0
Q ss_pred HHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEE
Q 003175 448 RAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVE 527 (842)
Q Consensus 448 ~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~ 527 (842)
..++.|+++|+|+.|+||++|++.|..+|...+.++. +.+++|+||||||||++++.+++++......... .+.+++
T Consensus 3 ~~~~~l~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~--~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~-~~~~v~ 79 (365)
T TIGR02928 3 RNRDLLEPDYVPDRIVHRDEQIEELAKALRPILRGSR--PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDV-RVVTVY 79 (365)
T ss_pred CChhhCCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCC--CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCC-ceEEEE
Confidence 4578899999999999999999999999999887654 6789999999999999999999998764332222 278999
Q ss_pred EecccCCChHHHHHHHHHHHh--CCCC-----CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHh
Q 003175 528 VNGLKLASPENIYRVIYEALS--GHRV-----SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNI 600 (842)
Q Consensus 528 in~~~~~s~~~~~~~i~~~l~--g~~~-----~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~l 600 (842)
+||....+...++..|++++. |... +..+....+.+.+. ..+.+.||||||+|.|....+++|+.+
T Consensus 80 in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~~~vlvIDE~d~L~~~~~~~L~~l 152 (365)
T TIGR02928 80 VNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELN-------ERGDSLIIVLDEIDYLVGDDDDLLYQL 152 (365)
T ss_pred EECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH-------hcCCeEEEEECchhhhccCCcHHHHhH
Confidence 999999999999999999985 3321 23333344443332 124678999999999986667899999
Q ss_pred hcCC---CCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcC---cccCcHHHHHHHHHH
Q 003175 601 LDWP---TKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKG---IEAFEKQAIEFASRK 674 (842)
Q Consensus 601 l~~~---~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~---~~~~~~~~l~~ia~~ 674 (842)
+++. ...+.++++|+++|++++.+.+.+++.+||....|.|+||+.+|+.+||..+++. ...++++++++++++
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAAL 232 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Confidence 9872 3345789999999999888899999999997678999999999999999999862 246899999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHH
Q 003175 675 VAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVY 754 (842)
Q Consensus 675 ~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~ 754 (842)
++...||+|.++++|+.|+..|..+ +...|+.+||.+|+..+..+...+.+.+|+.+++++|+||++
T Consensus 233 ~~~~~Gd~R~al~~l~~a~~~a~~~-------------~~~~it~~~v~~a~~~~~~~~~~~~i~~l~~~~~~~l~ai~~ 299 (365)
T TIGR02928 233 AAQEHGDARKAIDLLRVAGEIAERE-------------GAERVTEDHVEKAQEKIEKDRLLELIRGLPTHSKLVLLAIAN 299 (365)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHc-------------CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888999999999999999999765 356799999999999998888889999999999999999998
Q ss_pred HHHHcCCcceeHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhcccceEEe---cCCCCCCceEEEE
Q 003175 755 ELYKTGMGETNFEKLAMTVSSLCTSNGEIFPSWDALLRVGCKLGECRIILC---EPGSRHRLQKLQL 818 (842)
Q Consensus 755 ~~~~~g~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~~li~~---~~g~~~r~~~i~l 818 (842)
+... +...+++++++++|..+|+..|..+.++..+..++..|..+|+|.. .+|++|+++.|+|
T Consensus 300 ~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~~~~~g~~g~~~~~~~ 365 (365)
T TIGR02928 300 LAAN-DEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDMLGLVEAEERNKGRGGRTREYSL 365 (365)
T ss_pred HHhc-CCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEEEEcCCCCCcEEEEeC
Confidence 7643 6677899999999999999999999999999999999999999986 4678899998875
No 7
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=100.00 E-value=1.5e-42 Score=318.17 Aligned_cols=148 Identities=64% Similarity=1.267 Sum_probs=139.1
Q ss_pred ccccccCCCCCCCCCCCCcccccccccccCccccCCCCCCCCcccccccccccchhhhhhhhhceeeccCCceEEEEEee
Q 003175 211 GFHLKCLKPPLKEVPEGEWVCEFCEARKLGKKIELPKPPEGKKRVRTMREKLLSSDLWAANIQSMWKEVDGNYWCRVFWY 290 (842)
Q Consensus 211 ~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~g~~~~~~~w~ 290 (842)
+||++||+|||..+|+|+|+||.|..+..+..+..+.++.+ ++.+++|++++.|+|+|++||++. |++|++|+||
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~vArIekiW~~~-G~~~~~grWy 75 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQSAMPQLPPTS----RSACEKLLSGDLWLARIEKLWEEN-GTYWYAARWY 75 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCCcccccCCCcc----hhhhhhhccCchHHHHHHHHHhcc-CceEEEEEEE
Confidence 59999999999999999999999999988876655555544 478999999999999999999987 9999999999
Q ss_pred cCCcccccCCCCCcccccccccCCccccccchhccceeeeCcccccccccCCCCEEEEeeEEecCccceeecc
Q 003175 291 MIPEETAAGRQPHNLRRELYRTNDFANIEMESIIRHCSVMSPKDFVKANDQGDDIFLCEYEYDIHWHSFKRIA 363 (842)
Q Consensus 291 ~~peEt~~~~~~~~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~~~~~~~~~~~C~~~y~~~~~~fk~i~ 363 (842)
++||||++|++++|+++|||+|+++|++++++|+|||.||++++|.+..+.++|||+|+|+||..|+.||+++
T Consensus 76 ~rPEET~~gr~~~~~~kEvFlS~~~d~~~~~~I~gkC~V~~~keY~k~e~~g~Dvy~Ce~~Yd~~~~~Fkr~~ 148 (148)
T cd04718 76 TLPEETHMGRQPHNLRRELYLTNDFADIEMECILRHCSVKCPKEFRDASNDGDDVFLCEYEYDVHWQSFKRLA 148 (148)
T ss_pred eCchhccCccccccccceeeeccccccccHHHHhcccEEcCHHHcccccCCCCceEEEEEEEhhhcCceeecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974
No 8
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=99.95 E-value=1.8e-25 Score=229.15 Aligned_cols=367 Identities=18% Similarity=0.229 Sum_probs=280.0
Q ss_pred HHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEE
Q 003175 449 AKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEV 528 (842)
Q Consensus 449 ~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~i 528 (842)
.++.|--++++ |.|..+|...|.++++..+..|+ +++++|.||+|+|||.++...+.. .++..+ .+-.|.+
T Consensus 15 l~~rl~~~~~~--l~g~~~~~~~l~~~lkqt~~~gE--snsviiigprgsgkT~li~~~Ls~-~q~~~E----~~l~v~L 85 (408)
T KOG2228|consen 15 LRERLCGPHIN--LFGVQDEQKHLSELLKQTILHGE--SNSVIIIGPRGSGKTILIDTRLSD-IQENGE----NFLLVRL 85 (408)
T ss_pred HHHHhcCCCcc--eeehHHHHHHHHHHHHHHHHhcC--CCceEEEccCCCCceEeeHHHHhh-HHhcCC----eEEEEEE
Confidence 45566666665 88999999999999999998887 899999999999999999988877 333222 3779999
Q ss_pred ecccCCChHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC-ChHHHHHh
Q 003175 529 NGLKLASPENIYRVIYEALSGH-------RVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR-NQSVLYNI 600 (842)
Q Consensus 529 n~~~~~s~~~~~~~i~~~l~g~-------~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~-~~~~L~~l 600 (842)
||.-.. ++.+...|..++.-. ..++.+.+..|...+.... ...+.++|+|+||+|.+... +|.+||++
T Consensus 86 ng~~~~-dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~---~~t~~~ViFIldEfDlf~~h~rQtllYnl 161 (408)
T KOG2228|consen 86 NGELQT-DKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGD---ETTSGKVIFILDEFDLFAPHSRQTLLYNL 161 (408)
T ss_pred Cccchh-hHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCC---CCCCceEEEEeehhhccccchhhHHHHHH
Confidence 999877 667777777666411 1244455555555554432 34456799999999999875 69999999
Q ss_pred hcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEe-cCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHh
Q 003175 601 LDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCF-GPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAIS 679 (842)
Q Consensus 601 l~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f-~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~ 679 (842)
||.......+++|||.|.+.|..+.+.+|++|||+.++|.+ |+.+.++..+|++..+.--..+.+ .++.|.+.+...-
T Consensus 162 fDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~v~~e~~~-~~~~wn~~~~~~L 240 (408)
T KOG2228|consen 162 FDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLSVPAEFSD-FAEKWNRSVQEVL 240 (408)
T ss_pred HHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhcCCccCcc-HHHHHHhhhhHhh
Confidence 99888888999999999999999999999999999876665 556789999999888854334555 6677777766666
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHHHHHc
Q 003175 680 GDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYELYKT 759 (842)
Q Consensus 680 Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~~~~~ 759 (842)
.|.|.+-..++.....-..... ......+.+|.+++..+...+..++..+.+.+|+.+++.+|++|.++....
T Consensus 241 ~d~~sl~k~l~~~~~~l~~~l~-------~~vas~p~~ta~~~~~v~~~ys~d~Kie~l~gLSvLEL~LII~~~r~~~~a 313 (408)
T KOG2228|consen 241 SDHRSLSKNLRSLHDLLKNALN-------RLVASHPLMTAEDLAEVSRQYSVDPKIELLSGLSVLELYLIICMKRETLIA 313 (408)
T ss_pred cchhhHHHHHHHhhHHHHhhhh-------hhhccCcchhHHHHHHHHHHhccChHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 6666544444433311111000 011124789999999998888889999999999999999999999977667
Q ss_pred CCcceeHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHhcccceEEecCCCCC-----CceEEEEecCHHHHHHHHhcC
Q 003175 760 GMGETNFEKLAMTVSSLCTSNGE--IFPSWDALLRVGCKLGECRIILCEPGSRH-----RLQKLQLNFPSDDVAFALKDS 832 (842)
Q Consensus 760 g~~~~~~~~v~~~y~~~~~~~~~--~~~~~~~~~~~~~~L~~~~li~~~~g~~~-----r~~~i~l~~~~~dv~~al~~~ 832 (842)
..+.++|.-+|.+|+.+.+.... ....++..+++++.|..+++|....+..+ .++.-.|.++...|.+.|+.+
T Consensus 314 e~~sfNF~lvY~EfrK~iksi~hTs~~~~k~vvlnAfEhL~slelI~p~~~~~~~~lt~e~ql~kLlvd~t~i~~~lrsy 393 (408)
T KOG2228|consen 314 ELNSFNFNLVYAEFRKFIKSIAHTSELWAKTVVLNAFEHLRSLELILPFEDIGGFGLTREYQLGKLLVDATQIHRGLRSY 393 (408)
T ss_pred hcCCccHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHhhhhheeeEEeecccCCcchhHHHHHhhhhhhHHHHHHHHHhc
Confidence 77889999999999999986322 23356788999999999999987543332 345678889999999999999
Q ss_pred CCCc
Q 003175 833 KDLP 836 (842)
Q Consensus 833 ~~l~ 836 (842)
.-+|
T Consensus 394 r~~P 397 (408)
T KOG2228|consen 394 RPCP 397 (408)
T ss_pred CCcH
Confidence 8864
No 9
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.3e-25 Score=226.77 Aligned_cols=221 Identities=21% Similarity=0.326 Sum_probs=173.9
Q ss_pred CCCCcHHHHHHHHHHHHHhhcC-------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 461 FLPCRNKEMEDITAFIKGATCD-------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~-------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
.+-|.++|+++|.+.++--+.+ |-.++.++|||||||||||.||++||++.. ..|+.+.++.+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~----------AtFIrvvgSEl 221 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD----------ATFIRVVGSEL 221 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC----------ceEEEeccHHH
Confidence 4556666666666666554443 333589999999999999999999999987 67999988764
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhhc
Q 003175 534 ASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNILD 602 (842)
Q Consensus 534 ~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll~ 602 (842)
. +.+-| +...+++++|.-++ .+.|+||||||||.+.+++ |..|.+||+
T Consensus 222 V----------qKYiG------EGaRlVRelF~lAr-----ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ 280 (406)
T COG1222 222 V----------QKYIG------EGARLVRELFELAR-----EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLN 280 (406)
T ss_pred H----------HHHhc------cchHHHHHHHHHHh-----hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHH
Confidence 3 22223 33467778887654 4689999999999999865 445555554
Q ss_pred CC--CCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHH
Q 003175 603 WP--TKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAI 678 (842)
Q Consensus 603 ~~--~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~ 678 (842)
.. ..+..+|-||++||++ +.|+|+|.+ ||+ +.|.||.++.+.+.+||+-+......-++..++.+++...+.
T Consensus 281 qlDGFD~~~nvKVI~ATNR~---D~LDPALLRPGR~D-RkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~ 356 (406)
T COG1222 281 QLDGFDPRGNVKVIMATNRP---DILDPALLRPGRFD-RKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGF 356 (406)
T ss_pred hccCCCCCCCeEEEEecCCc---cccChhhcCCCccc-ceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCC
Confidence 32 2467889999999995 567888876 888 799999999999999999999988877888899999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 679 SGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 679 ~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
+|.--+ .+|..|..+|.++. ...||++||.+|+.++..
T Consensus 357 sGAdlk--aictEAGm~AiR~~-------------R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 357 SGADLK--AICTEAGMFAIRER-------------RDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred chHHHH--HHHHHHhHHHHHhc-------------cCeecHHHHHHHHHHHHh
Confidence 994433 49999999999873 678999999999998765
No 10
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5e-23 Score=228.57 Aligned_cols=234 Identities=23% Similarity=0.311 Sum_probs=185.3
Q ss_pred cccccCcccHHHHHHHhccccC-CCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 436 EHVRCHKQTELERAKATLLLAT-LPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 436 ~~~~~~~~~~~~~~~~~L~~~~-~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+.+.|+++++++..|..|+... .|-..+ ..|.+- +-.+++++|+|||||||||+++++++++..
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~p---------e~F~r~----Gi~ppkGVLlyGPPGC~KT~lAkalAne~~-- 493 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHP---------EKFARF----GISPPKGVLLYGPPGCGKTLLAKALANEAG-- 493 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhch---------HHHHHh----cCCCCceEEEECCCCcchHHHHHHHhhhhc--
Confidence 3588999999999999998654 232222 222222 223579999999999999999999999987
Q ss_pred hhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-
Q 003175 515 VESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN- 593 (842)
Q Consensus 515 ~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~- 593 (842)
..|++|.|..+.+. ..| +..+.+.+.|+.++.. .|+||||||||.+...+
T Consensus 494 --------~nFlsvkgpEL~sk----------~vG------eSEr~ir~iF~kAR~~-----aP~IiFfDEiDsi~~~R~ 544 (693)
T KOG0730|consen 494 --------MNFLSVKGPELFSK----------YVG------ESERAIREVFRKARQV-----APCIIFFDEIDALAGSRG 544 (693)
T ss_pred --------CCeeeccCHHHHHH----------hcC------chHHHHHHHHHHHhhc-----CCeEEehhhHHhHhhccC
Confidence 66999998776543 223 5667888899887653 78999999999998765
Q ss_pred ----------hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcc
Q 003175 594 ----------QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIE 661 (842)
Q Consensus 594 ----------~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~ 661 (842)
.+.|++.||... ...+|+|||+||+ ++.|++++.+ ||+ +.|++|+++.+.+.+||+.++++.+
T Consensus 545 g~~~~v~~RVlsqLLtEmDG~e-~~k~V~ViAATNR---pd~ID~ALlRPGRlD-~iiyVplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 545 GSSSGVTDRVLSQLLTEMDGLE-ALKNVLVIAATNR---PDMIDPALLRPGRLD-RIIYVPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred CCccchHHHHHHHHHHHccccc-ccCcEEEEeccCC---hhhcCHHHcCCcccc-eeEeecCccHHHHHHHHHHHHhcCC
Confidence 134555556543 4678999999999 5788999998 998 7999999999999999999999988
Q ss_pred cCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhC
Q 003175 662 AFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 662 ~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
.-++..++.++..+.+++| |++ ++|+.|+.+|.++.. ....|+.+||.+|+..+..+
T Consensus 620 ~~~~vdl~~La~~T~g~SGAel~---~lCq~A~~~a~~e~i-----------~a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 620 FSEDVDLEELAQATEGYSGAEIV---AVCQEAALLALRESI-----------EATEITWQHFEEALKAVRPS 677 (693)
T ss_pred CCccccHHHHHHHhccCChHHHH---HHHHHHHHHHHHHhc-----------ccccccHHHHHHHHHhhccc
Confidence 7677788999999999998 554 599999999987743 25679999999999876654
No 11
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7e-22 Score=205.95 Aligned_cols=245 Identities=24% Similarity=0.322 Sum_probs=181.6
Q ss_pred ccccCcccHHHHHHHhccccCC-CCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHh
Q 003175 437 HVRCHKQTELERAKATLLLATL-PKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEV 515 (842)
Q Consensus 437 ~~~~~~~~~~~~~~~~L~~~~~-p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~ 515 (842)
.++|.++.++..|++.|++.++ |--+| +++.. ...+-+++|++||||||||.||++|+.+++
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVvlPi~mP----------e~F~G----irrPWkgvLm~GPPGTGKTlLAKAvATEc~--- 270 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVVLPIWMP----------EFFKG----IRRPWKGVLMVGPPGTGKTLLAKAVATECG--- 270 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHhhhhhhH----------HHHhh----cccccceeeeeCCCCCcHHHHHHHHHHhhc---
Confidence 4899999999999999998764 33233 34433 333578999999999999999999999998
Q ss_pred hcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC--
Q 003175 516 ESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-- 593 (842)
Q Consensus 516 ~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-- 593 (842)
..|+.|+...+++. ..| +..++++-+|.-++. ..|.+|||||||.|..++
T Consensus 271 -------tTFFNVSsstltSK----------wRG------eSEKlvRlLFemARf-----yAPStIFiDEIDslcs~RG~ 322 (491)
T KOG0738|consen 271 -------TTFFNVSSSTLTSK----------WRG------ESEKLVRLLFEMARF-----YAPSTIFIDEIDSLCSQRGG 322 (491)
T ss_pred -------CeEEEechhhhhhh----------hcc------chHHHHHHHHHHHHH-----hCCceeehhhHHHHHhcCCC
Confidence 56899987776653 222 223333334443322 378999999999998764
Q ss_pred ----------hHHHHHhhcCCCC--CCCc-EEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc
Q 003175 594 ----------QSVLYNILDWPTK--PNSK-LIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI 660 (842)
Q Consensus 594 ----------~~~L~~ll~~~~~--~~~~-vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~ 660 (842)
.+.|+-.+|.... .+.+ |.|+++|| +|-.|+..+++||. .+|++|.++.+.+..+|+..|...
T Consensus 323 s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN---~PWdiDEAlrRRlE-KRIyIPLP~~~~R~~Li~~~l~~~ 398 (491)
T KOG0738|consen 323 SSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN---FPWDIDEALRRRLE-KRIYIPLPDAEARSALIKILLRSV 398 (491)
T ss_pred ccchhHHHHHHHHHHHHhhccccccccceeEEEEeccC---CCcchHHHHHHHHh-hheeeeCCCHHHHHHHHHHhhccc
Confidence 2457777776543 2334 45556665 47889999999998 799999999999999999999988
Q ss_pred ccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCC-----CcCCcCCCcccHHHHHHHHHHHhhChH
Q 003175 661 EAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNK-----NSASVGKSLVGMADVEAAIQEMFQAPH 734 (842)
Q Consensus 661 ~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~-----~~~~~~~~~It~~dv~~A~~~~~~~~~ 734 (842)
...++..++.+++...+++| |++ ++|+.|...+.++........ .... -...|+..||+.|+.++..+..
T Consensus 399 ~~~~~~~~~~lae~~eGySGaDI~---nvCreAsm~~mRR~i~g~~~~ei~~lakE~-~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 399 ELDDPVNLEDLAERSEGYSGADIT---NVCREASMMAMRRKIAGLTPREIRQLAKEE-PKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred cCCCCccHHHHHHHhcCCChHHHH---HHHHHHHHHHHHHHHhcCCcHHhhhhhhhc-cccccchhhHHHHHHHcCcCCC
Confidence 88888888999999999999 454 699999999988654332211 1111 2367999999999998776543
No 12
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.87 E-value=1.5e-21 Score=193.17 Aligned_cols=218 Identities=24% Similarity=0.317 Sum_probs=165.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcC----CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC
Q 003175 460 KFLPCRNKEMEDITAFIKGATCD----DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS 535 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~----~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s 535 (842)
+.++|+|+.... .+.|...+.+ +.=.++++|||||||||||+++++++++.. .+++.+++..+.
T Consensus 121 ddViGqEeAK~k-crli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k----------vp~l~vkat~li- 188 (368)
T COG1223 121 DDVIGQEEAKRK-CRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK----------VPLLLVKATELI- 188 (368)
T ss_pred hhhhchHHHHHH-HHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC----------CceEEechHHHH-
Confidence 445666654443 2333333333 222378999999999999999999999886 678888865532
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC--h----------HHHHHhhcC
Q 003175 536 PENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN--Q----------SVLYNILDW 603 (842)
Q Consensus 536 ~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~--~----------~~L~~ll~~ 603 (842)
.+.. .+..+.+.+.|..+.+ ..|||+||||+|.+.-.+ | ++|+.-+|.
T Consensus 189 --------GehV-------Gdgar~Ihely~rA~~-----~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDg 248 (368)
T COG1223 189 --------GEHV-------GDGARRIHELYERARK-----AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDG 248 (368)
T ss_pred --------HHHh-------hhHHHHHHHHHHHHHh-----cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccC
Confidence 2221 2455667777776654 379999999999987643 2 457777776
Q ss_pred CCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhc-CH
Q 003175 604 PTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISG-DA 682 (842)
Q Consensus 604 ~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~G-d~ 682 (842)
.. .+-.|+.|++||+ ++.|++.++|||. ..|.|..++.+++.+||...++.++.--+..+++++.+..+.+| |+
T Consensus 249 i~-eneGVvtIaaTN~---p~~LD~aiRsRFE-eEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdi 323 (368)
T COG1223 249 IK-ENEGVVTIAATNR---PELLDPAIRSRFE-EEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDI 323 (368)
T ss_pred cc-cCCceEEEeecCC---hhhcCHHHHhhhh-heeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhH
Confidence 54 5778999999999 5778999999999 79999999999999999999998875444458888888888888 55
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHH
Q 003175 683 RRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEM 729 (842)
Q Consensus 683 R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~ 729 (842)
.. .+++.|.+.|..+ +...|+.+|++.|+.+.
T Consensus 324 ke--kvlK~aLh~Ai~e-------------d~e~v~~edie~al~k~ 355 (368)
T COG1223 324 KE--KVLKTALHRAIAE-------------DREKVEREDIEKALKKE 355 (368)
T ss_pred HH--HHHHHHHHHHHHh-------------chhhhhHHHHHHHHHhh
Confidence 43 6889999988876 46789999999999863
No 13
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.9e-21 Score=216.20 Aligned_cols=257 Identities=23% Similarity=0.328 Sum_probs=183.7
Q ss_pred cccccccCcccccCcccHHHHHHHhccccC-CCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHH
Q 003175 428 KIGRKRIPEHVRCHKQTELERAKATLLLAT-LPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLA 506 (842)
Q Consensus 428 ~~~~~~~p~~~~~~~~~~~~~~~~~L~~~~-~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~ 506 (842)
.+|++.+|. |+|+++++++.+|..+.... +|-..+ +.+...++ ...+||||||||||||.+|++
T Consensus 660 aiGAPKIPn-V~WdDVGGLeevK~eIldTIqlPL~hp----------eLfssglr----kRSGILLYGPPGTGKTLlAKA 724 (953)
T KOG0736|consen 660 AIGAPKIPN-VSWDDVGGLEEVKTEILDTIQLPLKHP----------ELFSSGLR----KRSGILLYGPPGTGKTLLAKA 724 (953)
T ss_pred hcCCCCCCc-cchhcccCHHHHHHHHHHHhcCcccCh----------hhhhcccc----ccceeEEECCCCCchHHHHHH
Confidence 478877775 89999999999998887553 443333 22222222 246799999999999999999
Q ss_pred HHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecC
Q 003175 507 VMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDEL 586 (842)
Q Consensus 507 v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEi 586 (842)
||.++. ..|+.|.|.++.+. ..| +..+.++++|..++. ..|||||+||+
T Consensus 725 VATEcs----------L~FlSVKGPELLNM----------YVG------qSE~NVR~VFerAR~-----A~PCVIFFDEL 773 (953)
T KOG0736|consen 725 VATECS----------LNFLSVKGPELLNM----------YVG------QSEENVREVFERARS-----AAPCVIFFDEL 773 (953)
T ss_pred HHhhce----------eeEEeecCHHHHHH----------Hhc------chHHHHHHHHHHhhc-----cCCeEEEeccc
Confidence 999998 77999988765432 223 556778889987754 48999999999
Q ss_pred cccccCCh-------------HHHHHhhcCCCC-CCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCC-CHHHH
Q 003175 587 DLLVTRNQ-------------SVLYNILDWPTK-PNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPY-NHQQL 649 (842)
Q Consensus 587 d~L~~~~~-------------~~L~~ll~~~~~-~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~-~~~e~ 649 (842)
|.|++++. ..|+.-+|..+. ....|.|||+||++ +.|+|.+.+ ||+ ..+++.+. +.+..
T Consensus 774 DSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP---DLLDpALLRPGRFD-KLvyvG~~~d~esk 849 (953)
T KOG0736|consen 774 DSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP---DLLDPALLRPGRFD-KLVYVGPNEDAESK 849 (953)
T ss_pred cccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc---cccChhhcCCCccc-eeEEecCCccHHHH
Confidence 99998651 345556666654 56789999999996 456777776 898 56777665 45566
Q ss_pred HHHHHHHhcCcccCcHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHhhhccCC----CcCCcCCCcccHHHHHH
Q 003175 650 QEIISSRLKGIEAFEKQAIEFASRKV-AAISGDARRALEICRRAAEIADYRIKKQTSNK----NSASVGKSLVGMADVEA 724 (842)
Q Consensus 650 ~~Il~~~l~~~~~~~~~~l~~ia~~~-~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~----~~~~~~~~~It~~dv~~ 724 (842)
..||+...+....-++..+..||+++ ...+|.--. .+|..|+..|..+.....+.. .......-.|+++||.+
T Consensus 850 ~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlY--sLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflk 927 (953)
T KOG0736|consen 850 LRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLY--SLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLK 927 (953)
T ss_pred HHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHH--HHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHH
Confidence 77777776665544555566677766 345674433 499999999987754443322 23334567899999999
Q ss_pred HHHHHhhChHHH
Q 003175 725 AIQEMFQAPHIQ 736 (842)
Q Consensus 725 A~~~~~~~~~~~ 736 (842)
++.++..+...+
T Consensus 928 s~~~l~PSvS~~ 939 (953)
T KOG0736|consen 928 SAKRLQPSVSEQ 939 (953)
T ss_pred HHHhcCCcccHH
Confidence 999888765443
No 14
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.86 E-value=2.2e-22 Score=186.65 Aligned_cols=99 Identities=27% Similarity=0.593 Sum_probs=94.4
Q ss_pred hhhhhhhhceeeccCCceEEEEEeecCCcccccCCCCCcccccccccCCccccccchhccceeeeCcccccccccC---C
Q 003175 266 DLWAANIQSMWKEVDGNYWCRVFWYMIPEETAAGRQPHNLRRELYRTNDFANIEMESIIRHCSVMSPKDFVKANDQ---G 342 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~g~~~~~~~w~~~peEt~~~~~~~~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~~~~~---~ 342 (842)
..|+|+|.+||++.+|..|++|+||+||+||.+++++.|++||||+|++.|+|++++|+|||.||++++|.+.+|. +
T Consensus 20 ~~~i~~I~~i~~~~~g~~~~~~~Wf~rP~et~~~~~~~~~~~Evfls~~~d~~~~~~I~~kc~Vl~~~~y~~~~p~~~~~ 99 (121)
T cd04717 20 KPIIFRIERLWKDEDGEKFFFGCWFYRPEETFHEPTRKFYKNEVFKSPLYETVPVEEIVGKCAVMDVKDYIKGRPTEISE 99 (121)
T ss_pred CCEEEEEeEEEECCCCCEEEEEEEEeChHHccCCCccccccCceEEcCccccccHHHhcCeeEEEehHHHhcCCCCCCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999988 4
Q ss_pred CCEEEEeeEEecCccceeeccc
Q 003175 343 DDIFLCEYEYDIHWHSFKRIAD 364 (842)
Q Consensus 343 ~~~~~C~~~y~~~~~~fk~i~~ 364 (842)
+|+|+|++.|+...+.|++++.
T Consensus 100 ~dvy~ce~~y~~~~~~~~~~k~ 121 (121)
T cd04717 100 EDVYVCESRYNESAKSFKKIKT 121 (121)
T ss_pred CCEEEEeEEECcccccEecccC
Confidence 7999999999999999999863
No 15
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.8e-20 Score=204.94 Aligned_cols=252 Identities=22% Similarity=0.300 Sum_probs=179.7
Q ss_pred ccccccCcccccCcccHHHHHHHhccccCC-CCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHH
Q 003175 429 IGRKRIPEHVRCHKQTELERAKATLLLATL-PKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAV 507 (842)
Q Consensus 429 ~~~~~~p~~~~~~~~~~~~~~~~~L~~~~~-p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v 507 (842)
.|+..+| .|+|.+++.+...+..|....+ |- -|-+.++.| |...+.++|++||||||||.||++|
T Consensus 500 EGF~tVP-dVtW~dIGaL~~vR~eL~~aI~~Pi---K~pd~~k~l----------Gi~~PsGvLL~GPPGCGKTLlAKAV 565 (802)
T KOG0733|consen 500 EGFATVP-DVTWDDIGALEEVRLELNMAILAPI---KRPDLFKAL----------GIDAPSGVLLCGPPGCGKTLLAKAV 565 (802)
T ss_pred ccceecC-CCChhhcccHHHHHHHHHHHHhhhc---cCHHHHHHh----------CCCCCCceEEeCCCCccHHHHHHHH
Confidence 3444444 5899999999999988886543 22 222222222 2223688999999999999999999
Q ss_pred HHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCc
Q 003175 508 MRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELD 587 (842)
Q Consensus 508 ~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid 587 (842)
|++.+ ..|+.|.|.++.+. +.| +....++.+|..++. ..|||||+||+|
T Consensus 566 ANEag----------~NFisVKGPELlNk----------YVG------ESErAVR~vFqRAR~-----saPCVIFFDEiD 614 (802)
T KOG0733|consen 566 ANEAG----------ANFISVKGPELLNK----------YVG------ESERAVRQVFQRARA-----SAPCVIFFDEID 614 (802)
T ss_pred hhhcc----------CceEeecCHHHHHH----------Hhh------hHHHHHHHHHHHhhc-----CCCeEEEecchh
Confidence 99987 67999988765432 222 455677888887653 589999999999
Q ss_pred ccccCCh-----------HHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHH
Q 003175 588 LLVTRNQ-----------SVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIIS 654 (842)
Q Consensus 588 ~L~~~~~-----------~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~ 654 (842)
.|.+++. +.|+.-||.. .....|.|||+||++ +-++|++++ ||+ ..+++..++.+++.+||+
T Consensus 615 aL~p~R~~~~s~~s~RvvNqLLtElDGl-~~R~gV~viaATNRP---DiIDpAiLRPGRlD-k~LyV~lPn~~eR~~ILK 689 (802)
T KOG0733|consen 615 ALVPRRSDEGSSVSSRVVNQLLTELDGL-EERRGVYVIAATNRP---DIIDPAILRPGRLD-KLLYVGLPNAEERVAILK 689 (802)
T ss_pred hcCcccCCCCchhHHHHHHHHHHHhccc-ccccceEEEeecCCC---cccchhhcCCCccC-ceeeecCCCHHHHHHHHH
Confidence 9998652 3455555654 347789999999995 557787776 888 688999999999999999
Q ss_pred HHhc--CcccCcHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHHHHhhhccCC-CcCC--cCCCcccHHHHHHHHH
Q 003175 655 SRLK--GIEAFEKQAIEFASRKVA--AISGDARRALEICRRAAEIADYRIKKQTSNK-NSAS--VGKSLVGMADVEAAIQ 727 (842)
Q Consensus 655 ~~l~--~~~~~~~~~l~~ia~~~~--~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~-~~~~--~~~~~It~~dv~~A~~ 727 (842)
...+ +.+.-++..++.|++... +++|..-. .+|+.|...|.++..-..... .... .....++..||++|++
T Consensus 690 ~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLa--aLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~ 767 (802)
T KOG0733|consen 690 TITKNTKPPLSSDVDLDEIARNTKCEGFTGADLA--ALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQ 767 (802)
T ss_pred HHhccCCCCCCcccCHHHHhhcccccCCchhhHH--HHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHH
Confidence 9998 445666777888887665 78883322 489999999877643211110 0100 0123588899999999
Q ss_pred HHhhC
Q 003175 728 EMFQA 732 (842)
Q Consensus 728 ~~~~~ 732 (842)
.+..+
T Consensus 768 ~i~pS 772 (802)
T KOG0733|consen 768 RIRPS 772 (802)
T ss_pred hcCCC
Confidence 88765
No 16
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.85 E-value=4.8e-22 Score=181.46 Aligned_cols=98 Identities=14% Similarity=0.357 Sum_probs=89.5
Q ss_pred hhhhhhhhceeeccCCceEEEEEeecCCcccccCCCCCc-ccccccccCCccccccchhccceeeeCccccccc----cc
Q 003175 266 DLWAANIQSMWKEVDGNYWCRVFWYMIPEETAAGRQPHN-LRRELYRTNDFANIEMESIIRHCSVMSPKDFVKA----ND 340 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~g~~~~~~~w~~~peEt~~~~~~~~-~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~~----~~ 340 (842)
..|+|+|.+||++.+|+.|++|+|||||+||+++++..+ .++|||+|++.|+|++++|++||.|++...+... ..
T Consensus 19 ~~yi~rI~~i~e~~~g~~~~~v~WyyRpeet~~~r~~~~~~~rEvFlS~~~D~~pl~~I~~Kc~V~~~~~~~~~~~~~~~ 98 (122)
T cd04716 19 EPFICKITEFFEGTDGKTYFTAQWFYRAEDTVIERQATNHDKKRVFYSEIKNDNPLDCLISKVKILQVPPNVGTKRKKPN 98 (122)
T ss_pred CCEEEEEEEEEEcCCCceEEEEEEEEcHHHhccccccccCCCceEEEecccCccchhheeeeeEEEEeCCCCCccccccc
Confidence 468999999999999999999999999999999986555 4999999999999999999999999987777755 66
Q ss_pred CCCCEEEEeeEEecCccceeecc
Q 003175 341 QGDDIFLCEYEYDIHWHSFKRIA 363 (842)
Q Consensus 341 ~~~~~~~C~~~y~~~~~~fk~i~ 363 (842)
.++++|||+|.|+..|+.|++|.
T Consensus 99 ~~~~df~c~~~Y~~~~~tF~~~~ 121 (122)
T cd04716 99 SEKCDYYYDMEYCVPYSTFQTLR 121 (122)
T ss_pred CCCceEEEeeEeccchhheEeCC
Confidence 68999999999999999999985
No 17
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.1e-19 Score=198.99 Aligned_cols=205 Identities=24% Similarity=0.392 Sum_probs=161.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcC-------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 460 KFLPCRNKEMEDITAFIKGATCD-------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~-------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
..+-|.++++.+|...+.. +.. |-.+++++||+||||||||.||++++.+++ ++|+.|++.+
T Consensus 190 ~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~----------vPf~~isApe 258 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG----------VPFLSISAPE 258 (802)
T ss_pred hhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC----------CceEeecchh
Confidence 4577788888888877765 332 334689999999999999999999999998 8899999877
Q ss_pred CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh-----------HHHHHhh
Q 003175 533 LASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ-----------SVLYNIL 601 (842)
Q Consensus 533 ~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~-----------~~L~~ll 601 (842)
+.+ .++| +..+.|+++|.++.. ..||||||||||.+..+++ ..|++.|
T Consensus 259 ivS----------GvSG------ESEkkiRelF~~A~~-----~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~m 317 (802)
T KOG0733|consen 259 IVS----------GVSG------ESEKKIRELFDQAKS-----NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSM 317 (802)
T ss_pred hhc----------ccCc------ccHHHHHHHHHHHhc-----cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhh
Confidence 543 2223 456788899988865 4799999999999998763 2466777
Q ss_pred cCCCCC---CCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHH
Q 003175 602 DWPTKP---NSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVA 676 (842)
Q Consensus 602 ~~~~~~---~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~ 676 (842)
|..... +.+|+|||+||++ +.|++.|++ ||. ++|.+.-++..++.+||+..++++..-.+-.+..+|+++.
T Consensus 318 D~l~~~~~~g~~VlVIgATnRP---DslDpaLRRaGRFd-rEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTP 393 (802)
T KOG0733|consen 318 DELSNEKTKGDPVLVIGATNRP---DSLDPALRRAGRFD-REICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTP 393 (802)
T ss_pred hcccccccCCCCeEEEecCCCC---cccCHHHhcccccc-ceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCC
Confidence 765443 5789999999995 677887765 898 7999999999999999999998775444555778899998
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHHhh
Q 003175 677 AISGDARRALEICRRAAEIADYRIKK 702 (842)
Q Consensus 677 ~~~Gd~R~al~ll~~A~~~A~~~~~~ 702 (842)
++.|..-.| +|+.|+..|..+...
T Consensus 394 GfVGADL~A--L~~~Aa~vAikR~ld 417 (802)
T KOG0733|consen 394 GFVGADLMA--LCREAAFVAIKRILD 417 (802)
T ss_pred CccchhHHH--HHHHHHHHHHHHHhh
Confidence 888844443 899999999887443
No 18
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.84 E-value=1.7e-19 Score=206.70 Aligned_cols=204 Identities=21% Similarity=0.261 Sum_probs=147.3
Q ss_pred ccccCCC---CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCC---------
Q 003175 453 LLLATLP---KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSI--------- 520 (842)
Q Consensus 453 L~~~~~p---~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~--------- 520 (842)
|...|-| +.++|++..++.|..++.. +. ..+.+||+|++|||||++++.+++.|.+.......
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~----gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr 80 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDG----GR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhc----CC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHH
Confidence 3344444 4588999888877777653 32 46778999999999999999999999864221100
Q ss_pred -----CCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChH
Q 003175 521 -----RPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQS 595 (842)
Q Consensus 521 -----~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~ 595 (842)
....+++||...... ..+..+.++..... ...++..||||||+|.|....++
T Consensus 81 ~I~~G~h~DviEIDAas~rg------------------VDdIReLIe~a~~~-----P~~gr~KVIIIDEah~LT~~A~N 137 (830)
T PRK07003 81 EIDEGRFVDYVEMDAASNRG------------------VDEMAALLERAVYA-----PVDARFKVYMIDEVHMLTNHAFN 137 (830)
T ss_pred HHhcCCCceEEEeccccccc------------------HHHHHHHHHHHHhc-----cccCCceEEEEeChhhCCHHHHH
Confidence 012355665543222 12222222222111 11235689999999999887789
Q ss_pred HHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHH
Q 003175 596 VLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRK 674 (842)
Q Consensus 596 ~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~ 674 (842)
.|+++|+.+ ..++.||++||. ..+|.+.|+||| +.|.|.+++.+++.++|...++..+ .++++++.+|++.
T Consensus 138 ALLKtLEEP---P~~v~FILaTtd---~~KIp~TIrSRC--q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~ 209 (830)
T PRK07003 138 AMLKTLEEP---PPHVKFILATTD---PQKIPVTVLSRC--LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARA 209 (830)
T ss_pred HHHHHHHhc---CCCeEEEEEECC---hhhccchhhhhe--EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999998843 457888888887 578889999999 5699999999999999999987655 6889999998776
Q ss_pred HHHHhcCHHHHHHHHHHHHHH
Q 003175 675 VAAISGDARRALEICRRAAEI 695 (842)
Q Consensus 675 ~~~~~Gd~R~al~ll~~A~~~ 695 (842)
. .||+|++++++.+++.+
T Consensus 210 A---~GsmRdALsLLdQAia~ 227 (830)
T PRK07003 210 A---QGSMRDALSLTDQAIAY 227 (830)
T ss_pred c---CCCHHHHHHHHHHHHHh
Confidence 4 89999999999988864
No 19
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.83 E-value=4.2e-19 Score=193.40 Aligned_cols=267 Identities=20% Similarity=0.261 Sum_probs=189.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
..++|+++++++|..++........ ...+++|+||||||||++++.+++++.. .+..+++........+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~-~~~~~ll~Gp~G~GKT~la~~ia~~~~~----------~~~~~~~~~~~~~~~l 72 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQE-ALDHLLLYGPPGLGKTTLAHIIANEMGV----------NLKITSGPALEKPGDL 72 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEECCCCCCHHHHHHHHHHHhCC----------CEEEeccchhcCchhH
Confidence 4588999999999999987655433 3567999999999999999999998862 2444443322221111
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC--------------
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT-------------- 605 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~-------------- 605 (842)
. ..+.. . +.+.||||||+|.+....++.|+++++...
T Consensus 73 ~------------------~~l~~----~-------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~ 123 (305)
T TIGR00635 73 A------------------AILTN----L-------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSV 123 (305)
T ss_pred H------------------HHHHh----c-------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccce
Confidence 1 11111 1 245799999999998877788888775321
Q ss_pred -CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHH
Q 003175 606 -KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDAR 683 (842)
Q Consensus 606 -~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R 683 (842)
....++++|+++|.. ..+.+.+.+||. ..+.|.+|+.+++.+|+...+...+ .+++++++.+++. ..|++|
T Consensus 124 ~~~~~~~~li~~t~~~---~~l~~~l~sR~~-~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~---~~G~pR 196 (305)
T TIGR00635 124 RLDLPPFTLVGATTRA---GMLTSPLRDRFG-IILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARR---SRGTPR 196 (305)
T ss_pred eecCCCeEEEEecCCc---cccCHHHHhhcc-eEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHH---hCCCcc
Confidence 112347888888874 567788999997 5789999999999999999887544 7888888887665 589999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHHHHHcCCcc
Q 003175 684 RALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYELYKTGMGE 763 (842)
Q Consensus 684 ~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~~~~~g~~~ 763 (842)
.++.+|..+...|... +...|+.+++..++..+.. ....++.+++.+|.||...+. | +.
T Consensus 197 ~~~~ll~~~~~~a~~~-------------~~~~it~~~v~~~l~~l~~-----~~~~l~~~~~~~L~al~~~~~--~-~~ 255 (305)
T TIGR00635 197 IANRLLRRVRDFAQVR-------------GQKIINRDIALKALEMLMI-----DELGLDEIDRKLLSVLIEQFQ--G-GP 255 (305)
T ss_pred hHHHHHHHHHHHHHHc-------------CCCCcCHHHHHHHHHHhCC-----CCCCCCHHHHHHHHHHHHHhC--C-Cc
Confidence 9999999988777543 2356999999999987321 146788899999988876542 2 23
Q ss_pred eeHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH-HhcccceEE
Q 003175 764 TNFEKLAMTVSSLCTSNGEIFPSWDALLRVGC-KLGECRIIL 804 (842)
Q Consensus 764 ~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~-~L~~~~li~ 804 (842)
.+. ..+|...|..+.. +..+.+ .|.+.++|.
T Consensus 256 ~~~-------~~ia~~lg~~~~~---~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 256 VGL-------KTLAAALGEDADT---IEDVYEPYLLQIGFLQ 287 (305)
T ss_pred ccH-------HHHHHHhCCCcch---HHHhhhHHHHHcCCcc
Confidence 444 4556666654443 333345 588888885
No 20
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.5e-20 Score=200.77 Aligned_cols=227 Identities=26% Similarity=0.346 Sum_probs=168.4
Q ss_pred ccccCcccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhh---cCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 437 HVRCHKQTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGAT---CDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 437 ~~~~~~~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i---~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
.++|.++-+...||+.| ++|.++|++-- .-|..++.++||+||||||||.|+++++.+.+
T Consensus 300 nv~F~dVkG~DEAK~EL----------------eEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~- 362 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQEL----------------EEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG- 362 (752)
T ss_pred ccccccccChHHHHHHH----------------HHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC-
Confidence 46677777777777544 55666665521 11333689999999999999999999999876
Q ss_pred HhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC
Q 003175 514 EVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN 593 (842)
Q Consensus 514 ~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~ 593 (842)
++|++..|+++-. .+.| ...+.+++.|..+++ +.||||||||||.+..++
T Consensus 363 ---------VPFF~~sGSEFdE----------m~VG------vGArRVRdLF~aAk~-----~APcIIFIDEiDavG~kR 412 (752)
T KOG0734|consen 363 ---------VPFFYASGSEFDE----------MFVG------VGARRVRDLFAAAKA-----RAPCIIFIDEIDAVGGKR 412 (752)
T ss_pred ---------CCeEeccccchhh----------hhhc------ccHHHHHHHHHHHHh-----cCCeEEEEechhhhcccC
Confidence 7899999887532 1222 223567777877654 589999999999998765
Q ss_pred h-----------HHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCc
Q 003175 594 Q-----------SVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGI 660 (842)
Q Consensus 594 ~-----------~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~ 660 (842)
. +.|+--+|... .+..|||||+||. ++.|++.|.+ ||+ ++|.+|.++...+.+||..++.++
T Consensus 413 ~~~~~~y~kqTlNQLLvEmDGF~-qNeGiIvigATNf---pe~LD~AL~RPGRFD-~~v~Vp~PDv~GR~eIL~~yl~ki 487 (752)
T KOG0734|consen 413 NPSDQHYAKQTLNQLLVEMDGFK-QNEGIIVIGATNF---PEALDKALTRPGRFD-RHVTVPLPDVRGRTEILKLYLSKI 487 (752)
T ss_pred CccHHHHHHHHHHHHHHHhcCcC-cCCceEEEeccCC---hhhhhHHhcCCCccc-eeEecCCCCcccHHHHHHHHHhcC
Confidence 1 23444445543 4778999999997 6788888876 898 789999999999999999999987
Q ss_pred ccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHh
Q 003175 661 EAFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMF 730 (842)
Q Consensus 661 ~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~ 730 (842)
..-++.....||+-+.+.+|.- ..+++.+|+..|..+ +...|++.|++.|-.++.
T Consensus 488 ~~~~~VD~~iiARGT~GFsGAd--LaNlVNqAAlkAa~d-------------ga~~VtM~~LE~akDrIl 542 (752)
T KOG0734|consen 488 PLDEDVDPKIIARGTPGFSGAD--LANLVNQAALKAAVD-------------GAEMVTMKHLEFAKDRIL 542 (752)
T ss_pred CcccCCCHhHhccCCCCCchHH--HHHHHHHHHHHHHhc-------------CcccccHHHHhhhhhhee
Confidence 6555656677787776666622 236788888877655 456788888888877664
No 21
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.5e-18 Score=175.19 Aligned_cols=240 Identities=20% Similarity=0.280 Sum_probs=184.7
Q ss_pred HHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEe
Q 003175 450 KATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVN 529 (842)
Q Consensus 450 ~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in 529 (842)
...|++.++ ..++|.++..+++.-+|..+...+.. -.++||+||||.||||||+.++++++ ..+-..+
T Consensus 17 e~~lRP~~l-~efiGQ~~vk~~L~ifI~AAk~r~e~-lDHvLl~GPPGlGKTTLA~IIA~Emg----------vn~k~ts 84 (332)
T COG2255 17 ERSLRPKTL-DEFIGQEKVKEQLQIFIKAAKKRGEA-LDHVLLFGPPGLGKTTLAHIIANELG----------VNLKITS 84 (332)
T ss_pred hcccCcccH-HHhcChHHHHHHHHHHHHHHHhcCCC-cCeEEeeCCCCCcHHHHHHHHHHHhc----------CCeEecc
Confidence 344555544 56899999999999999998887763 57899999999999999999999998 3455556
Q ss_pred cccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC----
Q 003175 530 GLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT---- 605 (842)
Q Consensus 530 ~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~---- 605 (842)
+..+.-+.++... +... ...-||||||||.|.....++||-.++...
T Consensus 85 Gp~leK~gDlaai----------------------Lt~L-------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~ 135 (332)
T COG2255 85 GPALEKPGDLAAI----------------------LTNL-------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDII 135 (332)
T ss_pred cccccChhhHHHH----------------------HhcC-------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEE
Confidence 6555544333222 2211 144799999999999988999999997542
Q ss_pred -----------CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHH
Q 003175 606 -----------KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASR 673 (842)
Q Consensus 606 -----------~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~ 673 (842)
..-.++.+||+|.+. -.+...+++||++ ...+.-|+.+++.+|+......++ .+++++...|++
T Consensus 136 IG~gp~Arsv~ldLppFTLIGATTr~---G~lt~PLrdRFGi-~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~ 211 (332)
T COG2255 136 IGKGPAARSIRLDLPPFTLIGATTRA---GMLTNPLRDRFGI-IQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIAR 211 (332)
T ss_pred EccCCccceEeccCCCeeEeeecccc---ccccchhHHhcCC-eeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 123468999999884 4456788999994 778888999999999999887665 677777777776
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHH
Q 003175 674 KVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMV 753 (842)
Q Consensus 674 ~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~ 753 (842)
. +.|-+|-|..++++....|+-+ +...|+.+-..+|+..+.-+ -.+|...+..+|.+|.
T Consensus 212 r---SRGTPRIAnRLLrRVRDfa~V~-------------~~~~I~~~ia~~aL~~L~Vd-----~~GLd~~D~k~L~~li 270 (332)
T COG2255 212 R---SRGTPRIANRLLRRVRDFAQVK-------------GDGDIDRDIADKALKMLDVD-----ELGLDEIDRKYLRALI 270 (332)
T ss_pred h---ccCCcHHHHHHHHHHHHHHHHh-------------cCCcccHHHHHHHHHHhCcc-----cccccHHHHHHHHHHH
Confidence 5 5899999999999999999866 36788888888888765432 2467777778888877
Q ss_pred HH
Q 003175 754 YE 755 (842)
Q Consensus 754 ~~ 755 (842)
..
T Consensus 271 ~~ 272 (332)
T COG2255 271 EQ 272 (332)
T ss_pred HH
Confidence 64
No 22
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.2e-19 Score=191.63 Aligned_cols=188 Identities=21% Similarity=0.331 Sum_probs=139.5
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHH
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYR 541 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~ 541 (842)
++|.+.-+.. ...|...+..+. -.+++|||||||||||+++.++...+ ..|..+|+.. .+.+++..
T Consensus 26 ~vGQ~HLlg~-~~~lrr~v~~~~--l~SmIl~GPPG~GKTTlA~liA~~~~----------~~f~~~sAv~-~gvkdlr~ 91 (436)
T COG2256 26 VVGQEHLLGE-GKPLRRAVEAGH--LHSMILWGPPGTGKTTLARLIAGTTN----------AAFEALSAVT-SGVKDLRE 91 (436)
T ss_pred hcChHhhhCC-CchHHHHHhcCC--CceeEEECCCCCCHHHHHHHHHHhhC----------CceEEecccc-ccHHHHHH
Confidence 4454443333 234555566554 57899999999999999999999877 5589998765 22222222
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCC
Q 003175 542 VIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMD 621 (842)
Q Consensus 542 ~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~d 621 (842)
. +.++.+.. ..++..||||||||.|....|+.|+-.++ +..|++||+|. .+
T Consensus 92 i----------------------~e~a~~~~-~~gr~tiLflDEIHRfnK~QQD~lLp~vE-----~G~iilIGATT-EN 142 (436)
T COG2256 92 I----------------------IEEARKNR-LLGRRTILFLDEIHRFNKAQQDALLPHVE-----NGTIILIGATT-EN 142 (436)
T ss_pred H----------------------HHHHHHHH-hcCCceEEEEehhhhcChhhhhhhhhhhc-----CCeEEEEeccC-CC
Confidence 2 22221111 11467999999999999999999998876 67899999875 34
Q ss_pred CccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc----c----cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 003175 622 LPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI----E----AFEKQAIEFASRKVAAISGDARRALEICRRAA 693 (842)
Q Consensus 622 l~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~----~----~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~ 693 (842)
....+.+.|+||+. .+.|.|++.+++..+|+..+... + .+++++++++++. ..||+|.+++.+..++
T Consensus 143 PsF~ln~ALlSR~~--vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~---s~GD~R~aLN~LE~~~ 217 (436)
T COG2256 143 PSFELNPALLSRAR--VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRL---SNGDARRALNLLELAA 217 (436)
T ss_pred CCeeecHHHhhhhh--eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHh---cCchHHHHHHHHHHHH
Confidence 55678899999995 59999999999999999855422 1 3678899997766 4899999999999999
Q ss_pred HHHH
Q 003175 694 EIAD 697 (842)
Q Consensus 694 ~~A~ 697 (842)
..+.
T Consensus 218 ~~~~ 221 (436)
T COG2256 218 LSAE 221 (436)
T ss_pred HhcC
Confidence 8875
No 23
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.82 E-value=1.8e-18 Score=189.82 Aligned_cols=274 Identities=18% Similarity=0.235 Sum_probs=193.7
Q ss_pred hccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 452 TLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 452 ~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
.+.+. ....++|++++++.+..++......+. ...+++|+||||||||++++.++++++ ..+..+++.
T Consensus 18 ~~rP~-~~~~~vG~~~~~~~l~~~l~~~~~~~~-~~~~~ll~GppG~GKT~la~~ia~~l~----------~~~~~~~~~ 85 (328)
T PRK00080 18 SLRPK-SLDEFIGQEKVKENLKIFIEAAKKRGE-ALDHVLLYGPPGLGKTTLANIIANEMG----------VNIRITSGP 85 (328)
T ss_pred hcCcC-CHHHhcCcHHHHHHHHHHHHHHHhcCC-CCCcEEEECCCCccHHHHHHHHHHHhC----------CCeEEEecc
Confidence 34443 235699999999999999987665443 367899999999999999999999986 235555554
Q ss_pred cCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC-----
Q 003175 532 KLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK----- 606 (842)
Q Consensus 532 ~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~----- 606 (842)
.+..... +...+... ....||||||+|.+....++.|+.+++....
T Consensus 86 ~~~~~~~----------------------l~~~l~~l-------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~ 136 (328)
T PRK00080 86 ALEKPGD----------------------LAAILTNL-------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIG 136 (328)
T ss_pred cccChHH----------------------HHHHHHhc-------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeec
Confidence 4332211 11111111 2457999999999987777888888764310
Q ss_pred ----------CCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHH
Q 003175 607 ----------PNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKV 675 (842)
Q Consensus 607 ----------~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~ 675 (842)
.-.++++|+++|.. ..+.+.+.+||. ..+.|++|+.+++.+||...+...+ .+++++++++++.
T Consensus 137 ~~~~~~~~~~~l~~~~li~at~~~---~~l~~~L~sRf~-~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~- 211 (328)
T PRK00080 137 KGPAARSIRLDLPPFTLIGATTRA---GLLTSPLRDRFG-IVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARR- 211 (328)
T ss_pred cCccccceeecCCCceEEeecCCc---ccCCHHHHHhcC-eeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-
Confidence 11347889999874 457788999997 5799999999999999999987655 6888888887765
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHH
Q 003175 676 AAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYE 755 (842)
Q Consensus 676 ~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~ 755 (842)
..|++|.+..+|+++...|..+ +...|+.+++..++..+... ...|+..++.+|.+++..
T Consensus 212 --~~G~pR~a~~~l~~~~~~a~~~-------------~~~~I~~~~v~~~l~~~~~~-----~~~l~~~~~~~l~~~~~~ 271 (328)
T PRK00080 212 --SRGTPRIANRLLRRVRDFAQVK-------------GDGVITKEIADKALDMLGVD-----ELGLDEMDRKYLRTIIEK 271 (328)
T ss_pred --cCCCchHHHHHHHHHHHHHHHc-------------CCCCCCHHHHHHHHHHhCCC-----cCCCCHHHHHHHHHHHHH
Confidence 4899999999999988877644 24579999999998654322 257888888888878764
Q ss_pred HHHcCCcceeHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH-HhcccceEE
Q 003175 756 LYKTGMGETNFEKLAMTVSSLCTSNGEIFPSWDALLRVGC-KLGECRIIL 804 (842)
Q Consensus 756 ~~~~g~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~-~L~~~~li~ 804 (842)
+ ..+.+++..+. ...|..... +-..++ .|.+.++|.
T Consensus 272 ~---~~~~~~~~~~a-------~~lg~~~~~---~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 272 F---GGGPVGLDTLA-------AALGEERDT---IEDVYEPYLIQQGFIQ 308 (328)
T ss_pred c---CCCceeHHHHH-------HHHCCCcch---HHHHhhHHHHHcCCcc
Confidence 2 22346666553 334443332 232334 688888884
No 24
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7.3e-20 Score=191.56 Aligned_cols=248 Identities=23% Similarity=0.295 Sum_probs=182.5
Q ss_pred ccccCcccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhh
Q 003175 437 HVRCHKQTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVE 516 (842)
Q Consensus 437 ~~~~~~~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~ 516 (842)
.|+|.++.+++..++.|+..++ ||-|-.++-.....+. +..+||++||||||||.+|++++++.+
T Consensus 88 ~v~f~DIggLe~v~~~L~e~Vi---lPlr~pelF~~g~Ll~--------p~kGiLL~GPpG~GKTmlAKA~Akeag---- 152 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVI---LPLRRPELFAKGKLLR--------PPKGILLYGPPGTGKTMLAKAIAKEAG---- 152 (386)
T ss_pred eeehhhccchHHHHHHHHHHHh---hcccchhhhccccccc--------CCccceecCCCCchHHHHHHHHHHHcC----
Confidence 5789999999999999997764 4444333332111121 368899999999999999999999987
Q ss_pred cCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh--
Q 003175 517 SGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ-- 594 (842)
Q Consensus 517 ~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~-- 594 (842)
..|+.|.+..+++. + |.++.+.+..+|.-+.++ .|+||||||+|.+...++
T Consensus 153 ------a~fInv~~s~lt~K-----W-----------fgE~eKlv~AvFslAsKl-----~P~iIFIDEvds~L~~R~s~ 205 (386)
T KOG0737|consen 153 ------ANFINVSVSNLTSK-----W-----------FGEAQKLVKAVFSLASKL-----QPSIIFIDEVDSFLGQRRST 205 (386)
T ss_pred ------CCcceeeccccchh-----h-----------HHHHHHHHHHHHhhhhhc-----CcceeehhhHHHHHhhcccc
Confidence 45899998888763 1 235667788888877665 899999999999986442
Q ss_pred ---------HHHHHhhcCC-CCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCc
Q 003175 595 ---------SVLYNILDWP-TKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFE 664 (842)
Q Consensus 595 ---------~~L~~ll~~~-~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~ 664 (842)
+.+..+-+.. +..+.+|+|+|+||+ +..++.++.+|+. ++++++-++..++.+||+-.|+....-+
T Consensus 206 dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR---P~DlDeAiiRR~p-~rf~V~lP~~~qR~kILkviLk~e~~e~ 281 (386)
T KOG0737|consen 206 DHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR---PFDLDEAIIRRLP-RRFHVGLPDAEQRRKILKVILKKEKLED 281 (386)
T ss_pred hHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCC---CccHHHHHHHhCc-ceeeeCCCchhhHHHHHHHHhcccccCc
Confidence 1122222322 445568999999999 5888999999998 7999999999999999999998876666
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhc--c-CC-------Cc-----CCcCCCcccHHHHHHHHHHH
Q 003175 665 KQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQT--S-NK-------NS-----ASVGKSLVGMADVEAAIQEM 729 (842)
Q Consensus 665 ~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~--~-~~-------~~-----~~~~~~~It~~dv~~A~~~~ 729 (842)
+..+..++..+.+++|+-- .++|+.|+....++..... . +. .. ..-....+.++||..|+..+
T Consensus 282 ~vD~~~iA~~t~GySGSDL--kelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v 359 (386)
T KOG0737|consen 282 DVDLDEIAQMTEGYSGSDL--KELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRV 359 (386)
T ss_pred ccCHHHHHHhcCCCcHHHH--HHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhh
Confidence 7778899999999999432 3699999988776643321 0 00 00 00114678889999888877
Q ss_pred hhC
Q 003175 730 FQA 732 (842)
Q Consensus 730 ~~~ 732 (842)
..+
T Consensus 360 ~~~ 362 (386)
T KOG0737|consen 360 SAS 362 (386)
T ss_pred hhH
Confidence 654
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.82 E-value=1.5e-19 Score=201.90 Aligned_cols=227 Identities=21% Similarity=0.291 Sum_probs=164.4
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHHhhcC-------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEE
Q 003175 455 LATLPKFLPCRNKEMEDITAFIKGATCD-------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVE 527 (842)
Q Consensus 455 ~~~~p~~L~gRe~e~~~l~~~l~~~i~~-------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~ 527 (842)
+.+.++.+.|+++++++|...+...+.. +..++.++||+||||||||++++++++++. ..|+.
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~----------~~~i~ 195 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN----------ATFIR 195 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC----------CCEEE
Confidence 4455667889999999999988654443 223478899999999999999999999876 45888
Q ss_pred EecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHH
Q 003175 528 VNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSV 596 (842)
Q Consensus 528 in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~ 596 (842)
+++..+... ..| .....+...|..+.. ..|+||||||+|.|.... +..
T Consensus 196 v~~~~l~~~----------~~g------~~~~~i~~~f~~a~~-----~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~ 254 (389)
T PRK03992 196 VVGSELVQK----------FIG------EGARLVRELFELARE-----KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRT 254 (389)
T ss_pred eehHHHhHh----------hcc------chHHHHHHHHHHHHh-----cCCeEEEEechhhhhcccccCCCCccHHHHHH
Confidence 887654321 112 122334455544322 367999999999996432 345
Q ss_pred HHHhhcCCC--CCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHH
Q 003175 597 LYNILDWPT--KPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFAS 672 (842)
Q Consensus 597 L~~ll~~~~--~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia 672 (842)
|..++.... ....++.||++||.+ +.+++.+.+ ||. ..|.|++|+.+++.+||+.++.....-.+..+..++
T Consensus 255 l~~lL~~ld~~~~~~~v~VI~aTn~~---~~ld~allRpgRfd-~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la 330 (389)
T PRK03992 255 LMQLLAEMDGFDPRGNVKIIAATNRI---DILDPAILRPGRFD-RIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELA 330 (389)
T ss_pred HHHHHHhccccCCCCCEEEEEecCCh---hhCCHHHcCCccCc-eEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHH
Confidence 666664322 234589999999985 567787775 888 689999999999999999998866533344466777
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhC
Q 003175 673 RKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 673 ~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
..+.+++| |++ .+|+.|...|..+ +...|+.+||.+|+..+...
T Consensus 331 ~~t~g~sgadl~---~l~~eA~~~a~~~-------------~~~~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 331 ELTEGASGADLK---AICTEAGMFAIRD-------------DRTEVTMEDFLKAIEKVMGK 375 (389)
T ss_pred HHcCCCCHHHHH---HHHHHHHHHHHHc-------------CCCCcCHHHHHHHHHHHhcc
Confidence 77766665 444 5899999998765 24679999999999987653
No 26
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=6.3e-19 Score=195.95 Aligned_cols=261 Identities=16% Similarity=0.154 Sum_probs=171.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCC--------------CceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIR--------------PYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~--------------~~~~ 525 (842)
+.++|.+..+..|..++.. +. .+++++|+||+|||||++|+.+++.+.+.......+ ...+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~----~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKS----GK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDV 92 (484)
T ss_pred HHHhChHHHHHHHHHHHHc----CC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccc
Confidence 4578888888776666654 33 467799999999999999999999998642211000 0123
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+++++.... +.....+.+.... .. ...++..|+||||+|.|....++.|+..++.
T Consensus 93 iEIdaas~~------------------gVd~IReL~e~l~-~~----p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE-- 147 (484)
T PRK14956 93 LEIDAASNR------------------GIENIRELRDNVK-FA----PMGGKYKVYIIDEVHMLTDQSFNALLKTLEE-- 147 (484)
T ss_pred eeechhhcc------------------cHHHHHHHHHHHH-hh----hhcCCCEEEEEechhhcCHHHHHHHHHHhhc--
Confidence 344432211 1122222222211 11 1124678999999999988888888888874
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
+..+++||++|+. +..+.+.|+|||. .+.|.+++.+++.++|...+...+ .++++++.+|++. ..||+|.
T Consensus 148 -Pp~~viFILaTte---~~kI~~TI~SRCq--~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~---S~Gd~Rd 218 (484)
T PRK14956 148 -PPAHIVFILATTE---FHKIPETILSRCQ--DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKK---GDGSVRD 218 (484)
T ss_pred -CCCceEEEeecCC---hhhccHHHHhhhh--eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCChHHH
Confidence 4678999988887 5788999999995 599999999999999999987665 6899999998776 4899999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHH--HHHHHHHHHHHHHcCCc
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLS--KIFLTAMVYELYKTGMG 762 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~--kliL~a~~~~~~~~g~~ 762 (842)
|++++.+++..+ ...|+.++|.+++.-...+....++.++-..+ ...|..+ ..+...|.+
T Consensus 219 AL~lLeq~i~~~-----------------~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l-~~l~~~G~d 280 (484)
T PRK14956 219 MLSFMEQAIVFT-----------------DSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEIL-ESLYQEGQD 280 (484)
T ss_pred HHHHHHHHHHhC-----------------CCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHH-HHHHHcCCC
Confidence 999999887542 13588888877664322222333333332211 1222222 223456766
Q ss_pred cee-HHHHHHHHHHHH
Q 003175 763 ETN-FEKLAMTVSSLC 777 (842)
Q Consensus 763 ~~~-~~~v~~~y~~~~ 777 (842)
... +.++.+.++.+.
T Consensus 281 ~~~~~~~l~~~~r~l~ 296 (484)
T PRK14956 281 IYKFLWDSIEFTHTLN 296 (484)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 555 355555555543
No 27
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.81 E-value=3.2e-19 Score=177.52 Aligned_cols=199 Identities=20% Similarity=0.283 Sum_probs=139.0
Q ss_pred HHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEe
Q 003175 450 KATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVN 529 (842)
Q Consensus 450 ~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in 529 (842)
.+.|+|..+ +.++|+++-+..+.-+++.+...+. .-.+++||||||+||||||+.++++++ ..+..++
T Consensus 15 ~~~lRP~~L-~efiGQ~~l~~~l~i~i~aa~~r~~-~l~h~lf~GPPG~GKTTLA~IIA~e~~----------~~~~~~s 82 (233)
T PF05496_consen 15 AERLRPKSL-DEFIGQEHLKGNLKILIRAAKKRGE-ALDHMLFYGPPGLGKTTLARIIANELG----------VNFKITS 82 (233)
T ss_dssp HHHTS-SSC-CCS-S-HHHHHHHHHHHHHHHCTTS----EEEEESSTTSSHHHHHHHHHHHCT------------EEEEE
T ss_pred HHhcCCCCH-HHccCcHHHHhhhHHHHHHHHhcCC-CcceEEEECCCccchhHHHHHHHhccC----------CCeEecc
Confidence 345666655 7899999999999988888766543 257899999999999999999999998 4477788
Q ss_pred cccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC---
Q 003175 530 GLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--- 606 (842)
Q Consensus 530 ~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--- 606 (842)
+..+....++... +... +...||||||||.|....|+.||..++....
T Consensus 83 g~~i~k~~dl~~i----------------------l~~l-------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idii 133 (233)
T PF05496_consen 83 GPAIEKAGDLAAI----------------------LTNL-------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDII 133 (233)
T ss_dssp CCC--SCHHHHHH----------------------HHT---------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEE
T ss_pred chhhhhHHHHHHH----------------------HHhc-------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEE
Confidence 7654443222221 1111 1447999999999999999999999975421
Q ss_pred ----C--------CCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHH
Q 003175 607 ----P--------NSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASR 673 (842)
Q Consensus 607 ----~--------~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~ 673 (842)
+ -.++.+||+|++. ..+.+.+++||++ ...+..|+.+++.+|+......++ .+++++..+||+
T Consensus 134 iG~g~~ar~~~~~l~~FTligATTr~---g~ls~pLrdRFgi-~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~ 209 (233)
T PF05496_consen 134 IGKGPNARSIRINLPPFTLIGATTRA---GLLSSPLRDRFGI-VLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIAR 209 (233)
T ss_dssp BSSSSS-BEEEEE----EEEEEESSG---CCTSHCCCTTSSE-EEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHH
T ss_pred eccccccceeeccCCCceEeeeeccc---cccchhHHhhcce-ecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 1 1368999999984 5567889999994 567999999999999998877665 678888888776
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHH
Q 003175 674 KVAAISGDARRALEICRRAAEIA 696 (842)
Q Consensus 674 ~~~~~~Gd~R~al~ll~~A~~~A 696 (842)
. +.|.+|-|+.+++++..+|
T Consensus 210 r---srGtPRiAnrll~rvrD~a 229 (233)
T PF05496_consen 210 R---SRGTPRIANRLLRRVRDFA 229 (233)
T ss_dssp C---TTTSHHHHHHHHHHHCCCC
T ss_pred h---cCCChHHHHHHHHHHHHHH
Confidence 6 5899999999999886554
No 28
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.81 E-value=9.1e-21 Score=174.86 Aligned_cols=94 Identities=28% Similarity=0.590 Sum_probs=87.5
Q ss_pred hhhhhhhhceeeccCCceEEEEEeecCCcccccCCCCCcccccccccCCccccccchhccceeeeCccccccccc-----
Q 003175 266 DLWAANIQSMWKEVDGNYWCRVFWYMIPEETAAGRQPHNLRRELYRTNDFANIEMESIIRHCSVMSPKDFVKAND----- 340 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~g~~~~~~~w~~~peEt~~~~~~~~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~~~~----- 340 (842)
..|||+|.+||++.+|+.|++|+|||||+||.+++++.|++||||+|++.|+|++++|+|||.|+++++|.+.++
T Consensus 20 ~pyIgrI~~i~e~~~g~~~~~v~WfyrPeEt~~~~~~~~~~~EvF~S~~~d~~~~~~I~gkc~V~~~~ey~~~~~~~~~~ 99 (121)
T cd04714 20 LPYVARIESLWEDPEGNMVVRVKWYYRPEETKGGRKPNHGEKELFASDHQDENSVQTIEHKCYVLTFAEYERLARVKKKP 99 (121)
T ss_pred CCEEEEEEEEEEcCCCCEEEEEEEEEcHHHccCcccccCCCCceEecCCcccccHHHhCcccEEEehhHheecccccCCC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred -CCCCEEEEeeEEecCccce
Q 003175 341 -QGDDIFLCEYEYDIHWHSF 359 (842)
Q Consensus 341 -~~~~~~~C~~~y~~~~~~f 359 (842)
.+.++|+|++.||...+-+
T Consensus 100 ~~~~d~~~Ce~~yn~~~~~~ 119 (121)
T cd04714 100 QDGVDFYYCAGTYNPDTGML 119 (121)
T ss_pred CcCCCEEEEeccCCCCcCcc
Confidence 4789999999999876543
No 29
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1.2e-18 Score=197.75 Aligned_cols=196 Identities=18% Similarity=0.250 Sum_probs=142.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC--C-----------------
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS--I----------------- 520 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~--~----------------- 520 (842)
+.++|.+..++.|..++.. +. .++.+||+|++|+|||++++.+++.|.+....+. .
T Consensus 16 ddVIGQe~vv~~L~~al~~----gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQ----QR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHh----CC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 4488998888877777654 32 4678899999999999999999999986321100 0
Q ss_pred CCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHh
Q 003175 521 RPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNI 600 (842)
Q Consensus 521 ~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~l 600 (842)
....++++++.... +.++..+.++..... ...++..|+||||+|.|....++.|++.
T Consensus 91 ~hpDviEIdAas~~------------------gVDdIReLie~~~~~-----P~~gr~KViIIDEah~Ls~~AaNALLKT 147 (700)
T PRK12323 91 RFVDYIEMDAASNR------------------GVDEMAQLLDKAVYA-----PTAGRFKVYMIDEVHMLTNHAFNAMLKT 147 (700)
T ss_pred CCCcceEecccccC------------------CHHHHHHHHHHHHhc-----hhcCCceEEEEEChHhcCHHHHHHHHHh
Confidence 00134555543222 222333333322211 1224678999999999988888889988
Q ss_pred hcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHh
Q 003175 601 LDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAIS 679 (842)
Q Consensus 601 l~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~ 679 (842)
|+. +..+++||++||. +.+|.+.|+|||. .+.|.+++.+++.+.|...+...+ .++++++++|++. ..
T Consensus 148 LEE---PP~~v~FILaTte---p~kLlpTIrSRCq--~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~---A~ 216 (700)
T PRK12323 148 LEE---PPEHVKFILATTD---PQKIPVTVLSRCL--QFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA---AQ 216 (700)
T ss_pred hcc---CCCCceEEEEeCC---hHhhhhHHHHHHH--hcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cC
Confidence 874 4567888888887 5788899999994 599999999999999999887554 6788888887765 48
Q ss_pred cCHHHHHHHHHHHHH
Q 003175 680 GDARRALEICRRAAE 694 (842)
Q Consensus 680 Gd~R~al~ll~~A~~ 694 (842)
|++|.+++++.+++.
T Consensus 217 Gs~RdALsLLdQaia 231 (700)
T PRK12323 217 GSMRDALSLTDQAIA 231 (700)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988775
No 30
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.80 E-value=8.4e-19 Score=194.67 Aligned_cols=220 Identities=21% Similarity=0.291 Sum_probs=153.4
Q ss_pred CCCcHHHHHHHHHHHHHhhcC-------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCC
Q 003175 462 LPCRNKEMEDITAFIKGATCD-------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLA 534 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~-------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~ 534 (842)
+.|.+.++++|.+.+...+.. +..++.++||+||||||||++++++++++. ..++.+.+..+.
T Consensus 147 igGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~----------~~fi~i~~s~l~ 216 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT----------ATFIRVVGSEFV 216 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC----------CCEEEEehHHHH
Confidence 445555555555555432221 223578999999999999999999999875 457887764321
Q ss_pred ChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhhcC
Q 003175 535 SPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNILDW 603 (842)
Q Consensus 535 s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll~~ 603 (842)
. ...| .....+.+.|..+. ...|+||||||+|.+..++ +..|..++.+
T Consensus 217 ~----------k~~g------e~~~~lr~lf~~A~-----~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ 275 (398)
T PTZ00454 217 Q----------KYLG------EGPRMVRDVFRLAR-----ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQ 275 (398)
T ss_pred H----------Hhcc------hhHHHHHHHHHHHH-----hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHH
Confidence 1 1112 12234555555442 2478999999999986432 2356666654
Q ss_pred CC--CCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHh
Q 003175 604 PT--KPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAIS 679 (842)
Q Consensus 604 ~~--~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~ 679 (842)
.. ....++.||++||. ++.+++.+.+ ||. ..|.|++|+.+++.+|++..+...+...+..++.++..+.+++
T Consensus 276 ld~~~~~~~v~VI~aTN~---~d~LDpAllR~GRfd-~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~s 351 (398)
T PTZ00454 276 MDGFDQTTNVKVIMATNR---ADTLDPALLRPGRLD-RKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKIS 351 (398)
T ss_pred hhccCCCCCEEEEEecCC---chhCCHHHcCCCccc-EEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCC
Confidence 32 23457899999998 4678888775 888 6899999999999999999888766445555667777776666
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 680 GDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 680 Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
|. ....+|+.|...|.++ +...|+.+||.+|+..+..
T Consensus 352 ga--DI~~l~~eA~~~A~r~-------------~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 352 AA--DIAAICQEAGMQAVRK-------------NRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HH--HHHHHHHHHHHHHHHc-------------CCCccCHHHHHHHHHHHHh
Confidence 62 2346899999999876 3468999999999987654
No 31
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=2.9e-18 Score=195.03 Aligned_cols=226 Identities=19% Similarity=0.229 Sum_probs=157.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC--------------CCCceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS--------------IRPYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~--------------~~~~~~ 525 (842)
+.++|++...+.|..++.. +. .++++||+||+|+|||++|+.+++.+.+...... .....+
T Consensus 15 ddVIGQe~vv~~L~~aI~~----gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALER----GR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHc----CC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 4588999887777777653 32 4678899999999999999999999976321100 011246
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+++++.......++ .+.+... .. ....++..|+||||+|.|....++.|+.+++.+
T Consensus 90 iEIDAAs~~~VddI------------------Reli~~~-~y----~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP- 145 (702)
T PRK14960 90 IEIDAASRTKVEDT------------------RELLDNV-PY----APTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP- 145 (702)
T ss_pred EEecccccCCHHHH------------------HHHHHHH-hh----hhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC-
Confidence 66666533322222 2222111 00 011235689999999999888889999999853
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
...+.||++++. +..+...++||+. ++.|.+++.+++.++|...+...+ .++++++.++++. ..||+|.
T Consensus 146 --P~~v~FILaTtd---~~kIp~TIlSRCq--~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~---S~GdLRd 215 (702)
T PRK14960 146 --PEHVKFLFATTD---PQKLPITVISRCL--QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAES---AQGSLRD 215 (702)
T ss_pred --CCCcEEEEEECC---hHhhhHHHHHhhh--eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHH
Confidence 456677777776 4567788899995 699999999999999999997665 7899999998876 4899999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhC
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSC 741 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~l 741 (842)
|+++|.+++... ...|+.++|...+.......+.+++..+
T Consensus 216 ALnLLDQaIayg-----------------~g~IT~edV~~lLG~~d~e~IfdLldAI 255 (702)
T PRK14960 216 ALSLTDQAIAYG-----------------QGAVHHQDVKEMLGLIDRTIIYDLILAV 255 (702)
T ss_pred HHHHHHHHHHhc-----------------CCCcCHHHHHHHhccCCHHHHHHHHHHH
Confidence 999998876431 2457888887766544333344444443
No 32
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.79 E-value=7.5e-19 Score=196.05 Aligned_cols=221 Identities=21% Similarity=0.277 Sum_probs=156.6
Q ss_pred CCCCcHHHHHHHHHHHHHhhcC-------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 461 FLPCRNKEMEDITAFIKGATCD-------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~-------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
.+.|.++++++|..++...+.. +..++.+++|+||||||||++++++++++. ..|+.+++..+
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~----------~~fi~V~~seL 253 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS----------ATFLRVVGSEL 253 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC----------CCEEEEecchh
Confidence 3567788888888877644332 223478899999999999999999999876 44788876654
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhhc
Q 003175 534 ASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNILD 602 (842)
Q Consensus 534 ~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll~ 602 (842)
.+. ..| .....+...|..+.. ..|+||||||+|.+..++ +..|.+++.
T Consensus 254 ~~k----------~~G------e~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~ 312 (438)
T PTZ00361 254 IQK----------YLG------DGPKLVRELFRVAEE-----NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLN 312 (438)
T ss_pred hhh----------hcc------hHHHHHHHHHHHHHh-----CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHH
Confidence 321 112 122334555544322 368999999999997532 234555554
Q ss_pred CCC--CCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHH
Q 003175 603 WPT--KPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAI 678 (842)
Q Consensus 603 ~~~--~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~ 678 (842)
... .....+.||++||.+ +.+++.+.+ ||. +.|.|++|+.+++.+||+.++.....-++..++.++....++
T Consensus 313 ~Ldg~~~~~~V~VI~ATNr~---d~LDpaLlRpGRfd-~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~ 388 (438)
T PTZ00361 313 QLDGFDSRGDVKVIMATNRI---ESLDPALIRPGRID-RKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDEL 388 (438)
T ss_pred HHhhhcccCCeEEEEecCCh---HHhhHHhccCCeeE-EEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCC
Confidence 321 234578999999984 677888764 887 689999999999999999998766544444566666666666
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 679 SGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 679 ~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
+|... ..+|+.|+..|.++ +...|+.+||..|+.++..
T Consensus 389 sgAdI--~~i~~eA~~~Alr~-------------~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 389 SGADI--KAICTEAGLLALRE-------------RRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred CHHHH--HHHHHHHHHHHHHh-------------cCCccCHHHHHHHHHHHHh
Confidence 66332 25899999999876 3568999999999988643
No 33
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=7.4e-19 Score=173.01 Aligned_cols=221 Identities=22% Similarity=0.367 Sum_probs=163.0
Q ss_pred CCCCcHHHHHHHHHHHHHhhcC-------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 461 FLPCRNKEMEDITAFIKGATCD-------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~-------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
.+-|.++|+++|.+.|.--+.. |-..+.++|+|||||||||.|+++++.... ..|+.++++.+
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~----------c~firvsgsel 217 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD----------CTFIRVSGSEL 217 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc----------eEEEEechHHH
Confidence 3667788999988887654433 222378899999999999999999999876 56999987654
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhhc
Q 003175 534 ASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNILD 602 (842)
Q Consensus 534 ~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll~ 602 (842)
.. ..| | +....+.+.|.-++ ...|.|||+||||.+.+.+ |..++.|++
T Consensus 218 vq-----k~i-----g------egsrmvrelfvmar-----ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlelln 276 (404)
T KOG0728|consen 218 VQ-----KYI-----G------EGSRMVRELFVMAR-----EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLN 276 (404)
T ss_pred HH-----HHh-----h------hhHHHHHHHHHHHH-----hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHH
Confidence 21 122 2 22345666665443 3578999999999998643 344555544
Q ss_pred CC--CCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHH
Q 003175 603 WP--TKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAI 678 (842)
Q Consensus 603 ~~--~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~ 678 (842)
.. .....++-||.+||++|+ |++.+.+ |++ +.|.|||++.+.+.+||+-+-...+....-.+..|+..+.+.
T Consensus 277 qldgfeatknikvimatnridi---ld~allrpgrid-rkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~ga 352 (404)
T KOG0728|consen 277 QLDGFEATKNIKVIMATNRIDI---LDPALLRPGRID-RKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGA 352 (404)
T ss_pred hccccccccceEEEEecccccc---ccHhhcCCCccc-ccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCC
Confidence 22 234678899999999755 5666654 666 789999999999999999888766544444577788888777
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 679 SGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 679 ~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
+|.--+ .+|..|..+|.++. ...||.+||+-|+.++..
T Consensus 353 sgaevk--~vcteagm~alrer-------------rvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 353 SGAEVK--GVCTEAGMYALRER-------------RVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred ccchhh--hhhhhhhHHHHHHh-------------hccccHHHHHHHHHHHHh
Confidence 886544 48999999998774 468999999999987654
No 34
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.3e-19 Score=200.11 Aligned_cols=299 Identities=21% Similarity=0.269 Sum_probs=219.3
Q ss_pred ccceeecccCCccchhhccCchhhhhccccCCCCCccccccccccCCCCCCCCCCccccccCCccccccccccccccccC
Q 003175 356 WHSFKRIADIDKEEEVEDADSDEDWKSSKAADSDTDEDMEFEDEDGKHLHTGPSPAHELAANSQRGRFFGLQKIGRKRIP 435 (842)
Q Consensus 356 ~~~fk~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 435 (842)
-+++|.|+..++.++++. ++.+++..+.+....+++..+....+.+++......++++.-... + --|.-.+|
T Consensus 232 ~EQlKaIqkELG~~~d~~-~e~~~~~~kie~~~~p~evk~k~~~El~kL~~m~~~SaE~~ViRn---Y----lDwll~lP 303 (782)
T COG0466 232 REQLKAIQKELGEDDDDK-DEVEELREKIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVIRN---Y----LDWLLDLP 303 (782)
T ss_pred HHHHHHHHHHhCCCccch-hHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH---H----HHHHHhCC
Confidence 356777887776554333 456677777777777888777777788888887776665221111 0 12345789
Q ss_pred cccccCcccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHh
Q 003175 436 EHVRCHKQTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEV 515 (842)
Q Consensus 436 ~~~~~~~~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~ 515 (842)
|.....+..++..|++.|..++. |.++..++|.++|.-........|..++|+||||+|||+|++.+|+.+++.
T Consensus 304 W~~~sk~~~Dl~~a~~iLd~dHY-----GLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk- 377 (782)
T COG0466 304 WGKRSKDKLDLKKAEKILDKDHY-----GLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK- 377 (782)
T ss_pred CccccchhhhHHHHHHHhccccc-----CchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC-
Confidence 99888899999999999997765 999999999999977665555568899999999999999999999999954
Q ss_pred hcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHH-HHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-
Q 003175 516 ESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKAL-HSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN- 593 (842)
Q Consensus 516 ~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~-~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~- 593 (842)
||.+.-..+.+.. .+.||+.+|-.++ ..+.+.+..+ .....|++|||||.+....
T Consensus 378 ---------fvR~sLGGvrDEA--------EIRGHRRTYIGamPGrIiQ~mkka------~~~NPv~LLDEIDKm~ss~r 434 (782)
T COG0466 378 ---------FVRISLGGVRDEA--------EIRGHRRTYIGAMPGKIIQGMKKA------GVKNPVFLLDEIDKMGSSFR 434 (782)
T ss_pred ---------EEEEecCccccHH--------HhccccccccccCChHHHHHHHHh------CCcCCeEEeechhhccCCCC
Confidence 8999888878763 3558887664332 1222222222 1255789999999998753
Q ss_pred ---hHHHHHhhcCCCC------------CCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhc
Q 003175 594 ---QSVLYNILDWPTK------------PNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLK 658 (842)
Q Consensus 594 ---~~~L~~ll~~~~~------------~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~ 658 (842)
.++|+.+||-.++ .-++|+||+|+|.+ +.+...|++|+. .|.++.|+.+|-.+|.+.+|-
T Consensus 435 GDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl---~tIP~PLlDRME--iI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 435 GDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSL---DTIPAPLLDRME--VIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred CChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcc---ccCChHHhccee--eeeecCCChHHHHHHHHHhcc
Confidence 4789999873322 23689999999985 567778889995 599999999999999999873
Q ss_pred -------Cc----ccCcHHHHHHHHHHHHHHhc--CH-HHHHHHHHHHHHHH
Q 003175 659 -------GI----EAFEKQAIEFASRKVAAISG--DA-RRALEICRRAAEIA 696 (842)
Q Consensus 659 -------~~----~~~~~~~l~~ia~~~~~~~G--d~-R~al~ll~~A~~~A 696 (842)
++ -.|+++++..+.+.+....| ++ |..-.+||.++.--
T Consensus 510 Pk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i 561 (782)
T COG0466 510 PKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKI 561 (782)
T ss_pred hHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHH
Confidence 11 16889999888887766655 34 44456777776543
No 35
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.9e-19 Score=174.15 Aligned_cols=219 Identities=23% Similarity=0.352 Sum_probs=161.4
Q ss_pred CCCcHHHHHHHHHHHHHhhc-------CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCC
Q 003175 462 LPCRNKEMEDITAFIKGATC-------DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLA 534 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~-------~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~ 534 (842)
+-|.++|+++|.+++--.+. -+-.++.++|+|||||||||.++++.+.+... .|+.+-+..+.
T Consensus 173 iGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a----------TFLKLAgPQLV 242 (424)
T KOG0652|consen 173 IGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA----------TFLKLAGPQLV 242 (424)
T ss_pred cccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc----------hHHHhcchHHH
Confidence 55666666666665533221 23345889999999999999999999887663 24444333221
Q ss_pred ChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhh--
Q 003175 535 SPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNIL-- 601 (842)
Q Consensus 535 s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll-- 601 (842)
+.+.| +..+++++.|..++ .+.|+||||||+|.+.+++ |..++.|+
T Consensus 243 ----------QMfIG------dGAkLVRDAFaLAK-----EkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ 301 (424)
T KOG0652|consen 243 ----------QMFIG------DGAKLVRDAFALAK-----EKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 301 (424)
T ss_pred ----------hhhhc------chHHHHHHHHHHhh-----ccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh
Confidence 11112 34466777776553 3589999999999999865 33444444
Q ss_pred -cCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHH
Q 003175 602 -DWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAI 678 (842)
Q Consensus 602 -~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~ 678 (842)
+.. .+..+|-||++||+.|+ |+|.+.+ |+. +.|.||-++.+.+..|++-+..+...-++..++.+++.+..+
T Consensus 302 LDGF-ss~~~vKviAATNRvDi---LDPALlRSGRLD-RKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddF 376 (424)
T KOG0652|consen 302 LDGF-SSDDRVKVIAATNRVDI---LDPALLRSGRLD-RKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDF 376 (424)
T ss_pred hcCC-CCccceEEEeecccccc---cCHHHhhccccc-ccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhccccc
Confidence 443 45778999999999654 5666654 777 789999999999999999999888888888889999988888
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 679 SGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 679 ~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
.|.--+| +|-.|.++|.++ +...|+-+||.+++.++..
T Consensus 377 NGAQcKA--VcVEAGMiALRr-------------~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 377 NGAQCKA--VCVEAGMIALRR-------------GATEVTHEDFMEGILEVQA 414 (424)
T ss_pred Cchhhee--eehhhhHHHHhc-------------ccccccHHHHHHHHHHHHH
Confidence 8876655 899999999877 3567999999999987754
No 36
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.79 E-value=1.2e-18 Score=197.38 Aligned_cols=198 Identities=22% Similarity=0.321 Sum_probs=146.9
Q ss_pred CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003175 483 DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLN 562 (842)
Q Consensus 483 ~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~ 562 (842)
+...++++||+||||||||+++++++++++ .+++.+++..+.+. ..| +....+.
T Consensus 255 gl~~pkGILL~GPpGTGKTllAkaiA~e~~----------~~~~~l~~~~l~~~----------~vG------ese~~l~ 308 (489)
T CHL00195 255 GLPTPRGLLLVGIQGTGKSLTAKAIANDWQ----------LPLLRLDVGKLFGG----------IVG------ESESRMR 308 (489)
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhC----------CCEEEEEhHHhccc----------ccC------hHHHHHH
Confidence 334578999999999999999999999886 56888887543321 111 2233455
Q ss_pred HHhhcccCCCCCCCCcEEEEEecCcccccCC---------hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc-
Q 003175 563 ERFLDGKKIGKEDDRPCILLIDELDLLVTRN---------QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS- 632 (842)
Q Consensus 563 ~~f~~~~~~~~~~~~~~IlilDEid~L~~~~---------~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s- 632 (842)
+.|..+.. ..|+||+|||+|.+.... ..++..++.|......+|+||++||.+ +.+++.+.+
T Consensus 309 ~~f~~A~~-----~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~---~~Ld~allR~ 380 (489)
T CHL00195 309 QMIRIAEA-----LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNI---DLLPLEILRK 380 (489)
T ss_pred HHHHHHHh-----cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCCh---hhCCHHHhCC
Confidence 56654432 378999999999986531 234555566655567789999999984 678888765
Q ss_pred -cCCceeEEecCCCHHHHHHHHHHHhcCcc--cCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 003175 633 -RMGVQRLCFGPYNHQQLQEIISSRLKGIE--AFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKN 708 (842)
Q Consensus 633 -R~~~~~i~f~p~~~~e~~~Il~~~l~~~~--~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~ 708 (842)
||+ ..|.|+.|+.+++.+|++.++.... ...+..++.+++.+.+++| |+. .+|..|...|..+
T Consensus 381 GRFD-~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~---~lv~eA~~~A~~~--------- 447 (489)
T CHL00195 381 GRFD-EIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIE---QSIIEAMYIAFYE--------- 447 (489)
T ss_pred CcCC-eEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHH---HHHHHHHHHHHHc---------
Confidence 998 6899999999999999999998653 2345567888888888777 554 4788888877644
Q ss_pred cCCcCCCcccHHHHHHHHHHHhhC
Q 003175 709 SASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 709 ~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
...|+.+|+..|+.++.+.
T Consensus 448 -----~~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 448 -----KREFTTDDILLALKQFIPL 466 (489)
T ss_pred -----CCCcCHHHHHHHHHhcCCC
Confidence 3468999999999987763
No 37
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=5.8e-18 Score=193.82 Aligned_cols=248 Identities=19% Similarity=0.197 Sum_probs=170.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC--------------CCCceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS--------------IRPYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~--------------~~~~~~ 525 (842)
+.++|.+..++.|..++.. +. .++.+||+||+|||||++++.+++.+.+...... .....+
T Consensus 16 ~divGq~~v~~~L~~~~~~----~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQ----QY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHh----CC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 4588999988887777754 32 4678899999999999999999999986422110 011236
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+++++...... .+..+.+...-. ....++..|+||||+|.|....++.|+..++.+
T Consensus 91 ~eidaas~~~v------------------~~iR~l~~~~~~-----~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep- 146 (509)
T PRK14958 91 FEVDAASRTKV------------------EDTRELLDNIPY-----APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP- 146 (509)
T ss_pred EEEcccccCCH------------------HHHHHHHHHHhh-----ccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc-
Confidence 66665432222 222222222111 112346789999999999988889999998854
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
...+.||++|++ +..+.+.|.||+. .+.|.+++.+++.+.+...++..+ .+++++++++++.. .||+|.
T Consensus 147 --p~~~~fIlattd---~~kl~~tI~SRc~--~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s---~GslR~ 216 (509)
T PRK14958 147 --PSHVKFILATTD---HHKLPVTVLSRCL--QFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAA---NGSVRD 216 (509)
T ss_pred --CCCeEEEEEECC---hHhchHHHHHHhh--hhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---CCcHHH
Confidence 456777778776 4677888999995 599999999999999999988665 68889998887664 799999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHHHHHcCCcc
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYELYKTGMGE 763 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~~~~~g~~~ 763 (842)
|++++.+++... ...|+.++|.+++.........+++..+.....--++.++..+...|.+.
T Consensus 217 al~lLdq~ia~~-----------------~~~It~~~V~~~lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~ 278 (509)
T PRK14958 217 ALSLLDQSIAYG-----------------NGKVLIADVKTMLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDF 278 (509)
T ss_pred HHHHHHHHHhcC-----------------CCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH
Confidence 999998876431 34688888887776555545555555544433332333444444555443
No 38
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=9.1e-18 Score=189.09 Aligned_cols=224 Identities=17% Similarity=0.175 Sum_probs=159.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC--------------CCCceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS--------------IRPYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~--------------~~~~~~ 525 (842)
+.++|.+..++.|...+. .+. .++++||+||+|+|||++|+.+++.+.+...... .....+
T Consensus 13 ~dliGQe~vv~~L~~a~~----~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFT----LNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHH----cCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 457888877666555443 343 4789999999999999999999999876432110 122457
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+++|+.......++... ++.. .. ....+++.|+||||+|.|....++.|+..++.+
T Consensus 88 ~eidaas~~~vddIR~I------------------ie~~-~~----~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP- 143 (491)
T PRK14964 88 IEIDAASNTSVDDIKVI------------------LENS-CY----LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP- 143 (491)
T ss_pred EEEecccCCCHHHHHHH------------------HHHH-Hh----ccccCCceEEEEeChHhCCHHHHHHHHHHHhCC-
Confidence 88887654443333222 1111 10 011236789999999999888888999998854
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
...++||++++. ...+.+.++||+. .+.|.+++.+++.++|...++..+ .+++++++++++.. .||+|.
T Consensus 144 --p~~v~fIlatte---~~Kl~~tI~SRc~--~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s---~GslR~ 213 (491)
T PRK14964 144 --APHVKFILATTE---VKKIPVTIISRCQ--RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENS---SGSMRN 213 (491)
T ss_pred --CCCeEEEEEeCC---hHHHHHHHHHhhe--eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---CCCHHH
Confidence 456777777765 4678889999994 599999999999999999988765 78999999988764 799999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHh
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMK 739 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~ 739 (842)
++++|.+++.++ ...||.++|.+.+.....+...+++.
T Consensus 214 alslLdqli~y~-----------------~~~It~e~V~~llg~~~~~~If~L~~ 251 (491)
T PRK14964 214 ALFLLEQAAIYS-----------------NNKISEKSVRDLLGCVDKHILEDLVE 251 (491)
T ss_pred HHHHHHHHHHhc-----------------CCCCCHHHHHHHHccCCHHHHHHHHH
Confidence 999999887643 23688888887654443333333333
No 39
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=1.2e-17 Score=193.35 Aligned_cols=212 Identities=19% Similarity=0.257 Sum_probs=150.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCC--------------CceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIR--------------PYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~--------------~~~~ 525 (842)
+.++|.+..++.|...+.. +. .++.+||+|++|+|||++++.+++.+.+.......+ ...+
T Consensus 16 ~divGQe~vv~~L~~~l~~----~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 16 AEVVGQEHVLTALANALDL----GR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred HHhcCcHHHHHHHHHHHHc----CC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 4588988888877666654 33 467789999999999999999999998752110000 1134
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+++++.... +.++..+.+... ... ...++..|+||||+|.|....++.|+.+++.
T Consensus 91 ieidaas~~------------------~VddiR~li~~~-~~~----p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-- 145 (647)
T PRK07994 91 IEIDAASRT------------------KVEDTRELLDNV-QYA----PARGRFKVYLIDEVHMLSRHSFNALLKTLEE-- 145 (647)
T ss_pred eeecccccC------------------CHHHHHHHHHHH-Hhh----hhcCCCEEEEEechHhCCHHHHHHHHHHHHc--
Confidence 455543211 122222222221 111 1224678999999999998889999999985
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
+...+.||++|+. +..+.+.|+||| ..+.|.+++.+++.++|..++...+ .++++++..|++. ..|++|.
T Consensus 146 -Pp~~v~FIL~Tt~---~~kLl~TI~SRC--~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~---s~Gs~R~ 216 (647)
T PRK07994 146 -PPEHVKFLLATTD---PQKLPVTILSRC--LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARA---ADGSMRD 216 (647)
T ss_pred -CCCCeEEEEecCC---ccccchHHHhhh--eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHH
Confidence 4567888878776 468889999998 5699999999999999999886544 6788888887765 5899999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHH
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQ 727 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~ 727 (842)
|++++.+++... ...|+.++|..++.
T Consensus 217 Al~lldqaia~~-----------------~~~it~~~v~~~lg 242 (647)
T PRK07994 217 ALSLTDQAIASG-----------------NGQVTTDDVSAMLG 242 (647)
T ss_pred HHHHHHHHHHhc-----------------CCCcCHHHHHHHHc
Confidence 999998876532 23477777776654
No 40
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.78 E-value=5.1e-18 Score=173.16 Aligned_cols=200 Identities=20% Similarity=0.251 Sum_probs=146.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.+.|.+..++.|...+.. + ...++|||||||||||+++++++++|.+. ...+..+...|++.....
T Consensus 36 de~~gQe~vV~~L~~a~~~----~--~lp~~LFyGPpGTGKTStalafar~L~~~----~~~~~rvl~lnaSderGi--- 102 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR----R--ILPHYLFYGPPGTGKTSTALAFARALNCE----QLFPCRVLELNASDERGI--- 102 (346)
T ss_pred HhhcchHHHHHHHHHHHhh----c--CCceEEeeCCCCCcHhHHHHHHHHHhcCc----cccccchhhhcccccccc---
Confidence 3467777777777666655 2 25789999999999999999999999862 223345666676554432
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
+.+.+.+. .|........ ...+.....+.||||||+|.|....|..|...++.. .....||.++|.
T Consensus 103 -svvr~Kik----~fakl~~~~~------~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~---s~~trFiLIcny 168 (346)
T KOG0989|consen 103 -SVVREKIK----NFAKLTVLLK------RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDF---SRTTRFILICNY 168 (346)
T ss_pred -cchhhhhc----CHHHHhhccc------cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhcc---ccceEEEEEcCC
Confidence 22222221 1222211111 111122234589999999999999999999999853 345667778886
Q ss_pred CCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003175 620 MDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAE 694 (842)
Q Consensus 620 ~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~ 694 (842)
.+++...+.||+. .+.|+++..+.+.+.|+......+ .++++++.+|+.. +.||+|+|+..|+.+..
T Consensus 169 ---lsrii~pi~SRC~--KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~---S~GdLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 169 ---LSRIIRPLVSRCQ--KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKI---SDGDLRRAITTLQSLSL 236 (346)
T ss_pred ---hhhCChHHHhhHH--HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH---cCCcHHHHHHHHHHhhc
Confidence 5888999999995 599999999999999999988766 7999999998876 48999999999998876
No 41
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=5.8e-19 Score=177.94 Aligned_cols=197 Identities=24% Similarity=0.320 Sum_probs=153.2
Q ss_pred cccccCcccHHHHHHHhccccC-CCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 436 EHVRCHKQTELERAKATLLLAT-LPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 436 ~~~~~~~~~~~~~~~~~L~~~~-~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
++|+|.++.+++.|+++|.+.+ +|-.|| ....++..+-++|||||||||||+.|+++|+.+.+
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFP--------------qlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-- 191 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFP--------------QLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-- 191 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccch--------------hhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--
Confidence 4689999999999999999876 455566 23445555678999999999999999999999987
Q ss_pred hhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh
Q 003175 515 VESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ 594 (842)
Q Consensus 515 ~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~ 594 (842)
-.|+.|+.+.+.+ .++ | +..+++...|.-++ .++|.||||||||.|...+.
T Consensus 192 --------STFFSvSSSDLvS-----KWm-----G------ESEkLVknLFemAR-----e~kPSIIFiDEiDslcg~r~ 242 (439)
T KOG0739|consen 192 --------STFFSVSSSDLVS-----KWM-----G------ESEKLVKNLFEMAR-----ENKPSIIFIDEIDSLCGSRS 242 (439)
T ss_pred --------CceEEeehHHHHH-----HHh-----c------cHHHHHHHHHHHHH-----hcCCcEEEeehhhhhccCCC
Confidence 3488887555433 222 2 23445555665443 35899999999999987541
Q ss_pred -----------HHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-c
Q 003175 595 -----------SVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-A 662 (842)
Q Consensus 595 -----------~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~ 662 (842)
..|+-.++.....+..|+|+|+||. +-.|+..+++||. .+|++|.+....+..+++-++...+ .
T Consensus 243 enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi---Pw~LDsAIRRRFe-kRIYIPLPe~~AR~~MF~lhlG~tp~~ 318 (439)
T KOG0739|consen 243 ENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI---PWVLDSAIRRRFE-KRIYIPLPEAHARARMFKLHLGDTPHV 318 (439)
T ss_pred CCchHHHHHHHHHHHHhhhccccCCCceEEEecCCC---chhHHHHHHHHhh-cceeccCCcHHHhhhhheeccCCCccc
Confidence 2244444555556778999999996 6889999999999 7999999999999999999998765 7
Q ss_pred CcHHHHHHHHHHHHHHhcC
Q 003175 663 FEKQAIEFASRKVAAISGD 681 (842)
Q Consensus 663 ~~~~~l~~ia~~~~~~~Gd 681 (842)
+.+..+..+++++.+++|.
T Consensus 319 LT~~d~~eL~~kTeGySGs 337 (439)
T KOG0739|consen 319 LTEQDFKELARKTEGYSGS 337 (439)
T ss_pred cchhhHHHHHhhcCCCCcC
Confidence 7888899999999999994
No 42
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=1.2e-17 Score=192.07 Aligned_cols=256 Identities=18% Similarity=0.218 Sum_probs=171.7
Q ss_pred ccccCCC---CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCC---------
Q 003175 453 LLLATLP---KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSI--------- 520 (842)
Q Consensus 453 L~~~~~p---~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~--------- 520 (842)
|...|-| +.++|++..++.|..++.. +. .++++||+||+|+|||++++.+++.+.+.......
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~----~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr 80 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDE----GR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHc----CC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHH
Confidence 4444444 4488999988888777764 32 46889999999999999999999998764211000
Q ss_pred -----CCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChH
Q 003175 521 -----RPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQS 595 (842)
Q Consensus 521 -----~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~ 595 (842)
..+.++++++...... ....+.+...-. . ...++..||||||+|.|....++
T Consensus 81 ~i~~g~~~DvlEidaAs~~gV------------------d~IRelle~a~~-~----P~~gk~KVIIIDEad~Ls~~A~N 137 (709)
T PRK08691 81 QIDAGRYVDLLEIDAASNTGI------------------DNIREVLENAQY-A----PTAGKYKVYIIDEVHMLSKSAFN 137 (709)
T ss_pred HHhccCccceEEEeccccCCH------------------HHHHHHHHHHHh-h----hhhCCcEEEEEECccccCHHHHH
Confidence 0123455554332221 122222221100 0 01135689999999999876778
Q ss_pred HHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHH
Q 003175 596 VLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRK 674 (842)
Q Consensus 596 ~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~ 674 (842)
.|+..++.+ ...+.||++++. +..+...++|||. .|.|.+++.+++..+|..++...+ .++++++.+|++.
T Consensus 138 ALLKtLEEP---p~~v~fILaTtd---~~kL~~TIrSRC~--~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~ 209 (709)
T PRK08691 138 AMLKTLEEP---PEHVKFILATTD---PHKVPVTVLSRCL--QFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRA 209 (709)
T ss_pred HHHHHHHhC---CCCcEEEEEeCC---ccccchHHHHHHh--hhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 888888743 456777778776 4677888999994 599999999999999999998765 6899999998776
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHH
Q 003175 675 VAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVY 754 (842)
Q Consensus 675 ~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~ 754 (842)
. .||+|.++++|.+++... ...|+.++|..++.......+.+++..|...+..-++.++.
T Consensus 210 A---~GslRdAlnLLDqaia~g-----------------~g~It~e~V~~lLG~~d~~~If~LldAL~~~d~~~al~~l~ 269 (709)
T PRK08691 210 A---AGSMRDALSLLDQAIALG-----------------SGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQ 269 (709)
T ss_pred h---CCCHHHHHHHHHHHHHhc-----------------CCCcCHHHHHHHHcccCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4 799999999998887642 24588888888776655444555555444433333444444
Q ss_pred HHHHcCCcce
Q 003175 755 ELYKTGMGET 764 (842)
Q Consensus 755 ~~~~~g~~~~ 764 (842)
.+...|.+..
T Consensus 270 ~L~~~G~d~~ 279 (709)
T PRK08691 270 EMAACAVGFD 279 (709)
T ss_pred HHHHhCCCHH
Confidence 4445554433
No 43
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=1.5e-17 Score=188.86 Aligned_cols=229 Identities=17% Similarity=0.206 Sum_probs=158.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC------------------CC
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS------------------IR 521 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~------------------~~ 521 (842)
..++|.+..+..|...+.. +. .++++||+||+|||||++++.+++.+.+...... ..
T Consensus 21 ~dliGq~~vv~~L~~ai~~----~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILN----DR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHc----CC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 3477888877766655543 32 4688999999999999999999999986432100 01
Q ss_pred CceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhh
Q 003175 522 PYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNIL 601 (842)
Q Consensus 522 ~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll 601 (842)
...++++++...... .+....++..-.. ...++..||||||+|.|....++.|+..+
T Consensus 96 h~Dv~eidaas~~~v------------------d~Ir~iie~a~~~-----P~~~~~KVvIIDEa~~Ls~~a~naLLk~L 152 (507)
T PRK06645 96 HPDIIEIDAASKTSV------------------DDIRRIIESAEYK-----PLQGKHKIFIIDEVHMLSKGAFNALLKTL 152 (507)
T ss_pred CCcEEEeeccCCCCH------------------HHHHHHHHHHHhc-----cccCCcEEEEEEChhhcCHHHHHHHHHHH
Confidence 123555554332222 2222222221111 12246689999999999877778888888
Q ss_pred cCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhc
Q 003175 602 DWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISG 680 (842)
Q Consensus 602 ~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~G 680 (842)
+. +...++||++++. ...+.+.++||+ ..+.|.+++.+++.++|..+++..+ .+++++++++++. ..|
T Consensus 153 Ee---pp~~~vfI~aTte---~~kI~~tI~SRc--~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~---s~G 221 (507)
T PRK06645 153 EE---PPPHIIFIFATTE---VQKIPATIISRC--QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK---SEG 221 (507)
T ss_pred hh---cCCCEEEEEEeCC---hHHhhHHHHhcc--eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCC
Confidence 74 4567777777765 467888999999 4699999999999999999998765 6888999998775 479
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhC
Q 003175 681 DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSC 741 (842)
Q Consensus 681 d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~l 741 (842)
|+|.|++++.+++.++... ...||.++|.+.+.........+.+..+
T Consensus 222 slR~al~~Ldkai~~~~~~--------------~~~It~~~V~~llg~~~~~~if~L~~ai 268 (507)
T PRK06645 222 SARDAVSILDQAASMSAKS--------------DNIISPQVINQMLGLVDSSVIIEFVEYI 268 (507)
T ss_pred CHHHHHHHHHHHHHhhccC--------------CCCcCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999999999998765311 2358888888777655444444444443
No 44
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=1.3e-17 Score=192.17 Aligned_cols=214 Identities=19% Similarity=0.249 Sum_probs=154.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcC----------------CCCCc
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESG----------------SIRPY 523 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~----------------~~~~~ 523 (842)
+.++|.+..++.|..++.. +. .++.+||+||+|||||++++.+++.+.+..... .....
T Consensus 13 ~eivGq~~i~~~L~~~i~~----~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDA----GR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred HHhcCcHHHHHHHHHHHHc----CC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 4578988888887777654 32 467789999999999999999999998642110 01124
Q ss_pred eEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcC
Q 003175 524 CFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDW 603 (842)
Q Consensus 524 ~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~ 603 (842)
.++++++.....-.++. +........ ...+...|+||||+|.|....++.|+..++.
T Consensus 88 dvieidaas~~gvd~iR------------------el~~~~~~~-----P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE 144 (584)
T PRK14952 88 DVVELDAASHGGVDDTR------------------ELRDRAFYA-----PAQSRYRIFIVDEAHMVTTAGFNALLKIVEE 144 (584)
T ss_pred eEEEeccccccCHHHHH------------------HHHHHHHhh-----hhcCCceEEEEECCCcCCHHHHHHHHHHHhc
Confidence 56677665433322221 111111111 1113568999999999998889999999985
Q ss_pred CCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCH
Q 003175 604 PTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDA 682 (842)
Q Consensus 604 ~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~ 682 (842)
+...++||++++. +..+.+.|+||+ +.+.|.+++.+++.++|...++..+ .++++++.++++. ..||+
T Consensus 145 ---pp~~~~fIL~tte---~~kll~TI~SRc--~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~---s~Gdl 213 (584)
T PRK14952 145 ---PPEHLIFIFATTE---PEKVLPTIRSRT--HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRA---GGGSP 213 (584)
T ss_pred ---CCCCeEEEEEeCC---hHhhHHHHHHhc--eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCH
Confidence 4567888888876 378899999998 5699999999999999999988665 5889999887665 47999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHH
Q 003175 683 RRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQE 728 (842)
Q Consensus 683 R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~ 728 (842)
|.+++++.+++..+. ...||.+++...+..
T Consensus 214 R~aln~Ldql~~~~~----------------~~~It~~~v~~llg~ 243 (584)
T PRK14952 214 RDTLSVLDQLLAGAA----------------DTHVTYQRALGLLGA 243 (584)
T ss_pred HHHHHHHHHHHhccC----------------CCCcCHHHHHHHHCC
Confidence 999999998875431 245777777665543
No 45
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=2.6e-17 Score=186.53 Aligned_cols=225 Identities=16% Similarity=0.222 Sum_probs=154.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCC--------------CCceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSI--------------RPYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~--------------~~~~~ 525 (842)
+.++|++.....|..++ ..+. .+++++|+||||||||++|+.+++.+.+....... ....+
T Consensus 14 ~divGq~~i~~~L~~~i----~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINAL----KKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHH----HcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 45788877766555544 3443 46779999999999999999999998753211100 11245
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+.+|+........+. . +.+..... ...+...||||||+|.|....++.|+..++.
T Consensus 89 ~el~aa~~~gid~iR-~------------------i~~~~~~~----p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-- 143 (472)
T PRK14962 89 IELDAASNRGIDEIR-K------------------IRDAVGYR----PMEGKYKVYIIDEVHMLTKEAFNALLKTLEE-- 143 (472)
T ss_pred EEEeCcccCCHHHHH-H------------------HHHHHhhC----hhcCCeEEEEEEChHHhHHHHHHHHHHHHHh--
Confidence 666654322221111 1 11111100 1113568999999999987677788887774
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
+...++||++++. +..+.+++.||+. .+.|.+++.+++..+|+..+...+ .+++++++++++. ..||+|.
T Consensus 144 -p~~~vv~Ilattn---~~kl~~~L~SR~~--vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~---s~GdlR~ 214 (472)
T PRK14962 144 -PPSHVVFVLATTN---LEKVPPTIISRCQ--VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKR---ASGGLRD 214 (472)
T ss_pred -CCCcEEEEEEeCC---hHhhhHHHhcCcE--EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---hCCCHHH
Confidence 3456888877765 4578899999995 699999999999999999987655 7899999998775 4799999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhh
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKS 740 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ 740 (842)
+++.+..++..+ ...||.++|.+++.....+....++.+
T Consensus 215 aln~Le~l~~~~-----------------~~~It~e~V~~~l~~~~~~~i~~li~s 253 (472)
T PRK14962 215 ALTMLEQVWKFS-----------------EGKITLETVHEALGLIPIEVVRDYINA 253 (472)
T ss_pred HHHHHHHHHHhc-----------------CCCCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 999998866532 124899999988865544444344443
No 46
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=1.7e-17 Score=198.34 Aligned_cols=262 Identities=17% Similarity=0.175 Sum_probs=170.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhc----------------CCCCCc
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVES----------------GSIRPY 523 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~----------------~~~~~~ 523 (842)
+.++|++..++.|..+|.. +. .++.+||+||+|||||++++.+++.|.+.... +....+
T Consensus 15 ~eiiGqe~v~~~L~~~i~~----~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDS----GR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHh----CC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 4588999888887777764 32 46778999999999999999999999864221 011224
Q ss_pred eEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcC
Q 003175 524 CFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDW 603 (842)
Q Consensus 524 ~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~ 603 (842)
.+++|++...... ++..+.....+.. ...++..||||||+|.|....++.|+++|+.
T Consensus 90 dv~eidaas~~~V------------------d~iR~l~~~~~~~-----p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE 146 (824)
T PRK07764 90 DVTEIDAASHGGV------------------DDARELRERAFFA-----PAESRYKIFIIDEAHMVTPQGFNALLKIVEE 146 (824)
T ss_pred cEEEecccccCCH------------------HHHHHHHHHHHhc-----hhcCCceEEEEechhhcCHHHHHHHHHHHhC
Confidence 4566665433222 2222222222111 1124678999999999998889999999985
Q ss_pred CCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCH
Q 003175 604 PTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDA 682 (842)
Q Consensus 604 ~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~ 682 (842)
+ ...++||++++. .+.|.+.|+||+. .|.|.+++.+++.++|...+...+ .++++++.++++. ..||+
T Consensus 147 p---P~~~~fIl~tt~---~~kLl~TIrSRc~--~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~---sgGdl 215 (824)
T PRK07764 147 P---PEHLKFIFATTE---PDKVIGTIRSRTH--HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRA---GGGSV 215 (824)
T ss_pred C---CCCeEEEEEeCC---hhhhhHHHHhhee--EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCH
Confidence 3 557888888876 3578889999994 599999999999999999887655 5788888887665 47999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHHHHHcCCc
Q 003175 683 RRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYELYKTGMG 762 (842)
Q Consensus 683 R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~~~~~g~~ 762 (842)
|.++++|.+.+..+. ...||.++|...+.......+.+++..+......-++.++..+...|..
T Consensus 216 R~Al~eLEKLia~~~----------------~~~IT~e~V~allg~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G~d 279 (824)
T PRK07764 216 RDSLSVLDQLLAGAG----------------PEGVTYERAVALLGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHD 279 (824)
T ss_pred HHHHHHHHHHHhhcC----------------CCCCCHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999988764321 2357777777655433322333333333222222222333333444444
Q ss_pred cee-HHHHHHHHHHH
Q 003175 763 ETN-FEKLAMTVSSL 776 (842)
Q Consensus 763 ~~~-~~~v~~~y~~~ 776 (842)
... +.++++.|+++
T Consensus 280 p~~~L~~LL~~fRDL 294 (824)
T PRK07764 280 PRRFAEDLLERLRDL 294 (824)
T ss_pred HHHHHHHHHHHHHHH
Confidence 332 34444555443
No 47
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=2.2e-17 Score=183.21 Aligned_cols=226 Identities=15% Similarity=0.193 Sum_probs=153.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCC--------------CceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIR--------------PYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~--------------~~~~ 525 (842)
+.++|.+.-++.|...+.. +. .++.++|+||+|+|||++++.+++.+.+.......+ ...+
T Consensus 16 ~~iiGq~~~~~~l~~~~~~----~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSL----GR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHc----CC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 5588999888877666643 32 467789999999999999999999997532111000 0123
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+++++.... ...+..+.+ +.+.. ....+...|+||||+|.+....++.|+..++.+
T Consensus 91 ~~~~~~~~~------------------~v~~ir~i~-~~~~~----~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~- 146 (363)
T PRK14961 91 IEIDAASRT------------------KVEEMREIL-DNIYY----SPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP- 146 (363)
T ss_pred EEecccccC------------------CHHHHHHHH-HHHhc----CcccCCceEEEEEChhhcCHHHHHHHHHHHhcC-
Confidence 444432211 111211111 11111 111235679999999999876778888888753
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
...+.||++++. .+.+.+++.||+ ..+.|+|++.+++.++|..+++..+ .+++++++++++. ..||+|.
T Consensus 147 --~~~~~fIl~t~~---~~~l~~tI~SRc--~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~---s~G~~R~ 216 (363)
T PRK14961 147 --PQHIKFILATTD---VEKIPKTILSRC--LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYH---AHGSMRD 216 (363)
T ss_pred --CCCeEEEEEcCC---hHhhhHHHHhhc--eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHH
Confidence 446667777765 356888999999 4699999999999999999988765 5889999988776 4799999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhC
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSC 741 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~l 741 (842)
|+++|..++... ...|+.++|.+++.........+.+..+
T Consensus 217 al~~l~~~~~~~-----------------~~~It~~~v~~~l~~~~~~~i~~l~~ai 256 (363)
T PRK14961 217 ALNLLEHAINLG-----------------KGNINIKNVTDMLGLLNEKQSFLLTDAL 256 (363)
T ss_pred HHHHHHHHHHhc-----------------CCCCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 999999887531 3468888888877644443444444443
No 48
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.77 E-value=3.4e-18 Score=176.76 Aligned_cols=214 Identities=18% Similarity=0.288 Sum_probs=154.6
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHH
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYR 541 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~ 541 (842)
++|.+.-+.+ ...|+..+..+. -.+++|+||||||||+|++.++...... .+.||++++..-.+ .++..
T Consensus 140 yvGQ~hlv~q-~gllrs~ieq~~--ipSmIlWGppG~GKTtlArlia~tsk~~-------SyrfvelSAt~a~t-~dvR~ 208 (554)
T KOG2028|consen 140 YVGQSHLVGQ-DGLLRSLIEQNR--IPSMILWGPPGTGKTTLARLIASTSKKH-------SYRFVELSATNAKT-NDVRD 208 (554)
T ss_pred hcchhhhcCc-chHHHHHHHcCC--CCceEEecCCCCchHHHHHHHHhhcCCC-------ceEEEEEeccccch-HHHHH
Confidence 4566555555 566777777776 5789999999999999999998876532 27799998876332 22222
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCC
Q 003175 542 VIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMD 621 (842)
Q Consensus 542 ~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~d 621 (842)
. |..+++.....++..|||||||+.+....|+.++-.. ..+.|++||+|.. +
T Consensus 209 i----------------------fe~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~V-----E~G~I~lIGATTE-N 260 (554)
T KOG2028|consen 209 I----------------------FEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV-----ENGDITLIGATTE-N 260 (554)
T ss_pred H----------------------HHHHHHHHhhhcceeEEEeHHhhhhhhhhhhccccee-----ccCceEEEecccC-C
Confidence 1 1111111112246799999999999988888876444 4678999998753 4
Q ss_pred CccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcC----------cc----cCcHHHHHHHHHHHHHHhcCHHHHHH
Q 003175 622 LPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKG----------IE----AFEKQAIEFASRKVAAISGDARRALE 687 (842)
Q Consensus 622 l~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~----------~~----~~~~~~l~~ia~~~~~~~Gd~R~al~ 687 (842)
..-.+...|.|||. ++.+.+++.+.+..||.+-+.. ++ .+++.++++++.+ ..||+|.||+
T Consensus 261 PSFqln~aLlSRC~--VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~l---sdGDaR~aLN 335 (554)
T KOG2028|consen 261 PSFQLNAALLSRCR--VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYL---SDGDARAALN 335 (554)
T ss_pred CccchhHHHHhccc--eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHh---cCchHHHHHH
Confidence 45677889999995 5999999999999999985541 11 3677888887766 4899999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHH
Q 003175 688 ICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQE 728 (842)
Q Consensus 688 ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~ 728 (842)
.|..++.++..+.. ......|+.+||+++++.
T Consensus 336 ~Lems~~m~~tr~g---------~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 336 ALEMSLSMFCTRSG---------QSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHHHHHHHhhcC---------CcccceecHHHHHHHHhh
Confidence 99998776655421 113467999999999875
No 49
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=2.1e-17 Score=191.04 Aligned_cols=262 Identities=17% Similarity=0.237 Sum_probs=172.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC-------------------C
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS-------------------I 520 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~-------------------~ 520 (842)
+.++|.+.-++.|..++.. +. .++.+||+||+|+|||++++.+++.+.+....+. .
T Consensus 16 ~dviGQe~vv~~L~~~l~~----~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQ----QR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHc----CC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC
Confidence 4578988877766666554 33 4678899999999999999999999986421110 0
Q ss_pred CCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHh
Q 003175 521 RPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNI 600 (842)
Q Consensus 521 ~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~l 600 (842)
....++++++.... +.++..+.+...- +....++..|+||||+|.|....++.|+..
T Consensus 91 ~h~D~~eldaas~~------------------~Vd~iReli~~~~-----~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKt 147 (618)
T PRK14951 91 RFVDYTELDAASNR------------------GVDEVQQLLEQAV-----YKPVQGRFKVFMIDEVHMLTNTAFNAMLKT 147 (618)
T ss_pred CCCceeecCccccc------------------CHHHHHHHHHHHH-----hCcccCCceEEEEEChhhCCHHHHHHHHHh
Confidence 01134444443221 2222333332211 111234678999999999998888888888
Q ss_pred hcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHh
Q 003175 601 LDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAIS 679 (842)
Q Consensus 601 l~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~ 679 (842)
++. +...++||++|+. +..+.+.++||+ ..+.|.+++.+++.++|..++...+ .++++++.++++. ..
T Consensus 148 LEE---PP~~~~fIL~Ttd---~~kil~TIlSRc--~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~---s~ 216 (618)
T PRK14951 148 LEE---PPEYLKFVLATTD---PQKVPVTVLSRC--LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARA---AR 216 (618)
T ss_pred ccc---CCCCeEEEEEECC---chhhhHHHHHhc--eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cC
Confidence 874 4567777777765 466788899999 4699999999999999999987665 6788899988775 48
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHHHHHc
Q 003175 680 GDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYELYKT 759 (842)
Q Consensus 680 Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~~~~~ 759 (842)
||+|.+++++.++.... ...|+.++|.+++.....+...+++..+......-++.++..+...
T Consensus 217 GslR~al~lLdq~ia~~-----------------~~~It~~~V~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~ 279 (618)
T PRK14951 217 GSMRDALSLTDQAIAFG-----------------SGQLQEAAVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLN 279 (618)
T ss_pred CCHHHHHHHHHHHHHhc-----------------CCCcCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999998776542 2468888888777654444444444444433333333444444455
Q ss_pred CCccee-HHHHHHHHHHHH
Q 003175 760 GMGETN-FEKLAMTVSSLC 777 (842)
Q Consensus 760 g~~~~~-~~~v~~~y~~~~ 777 (842)
|.+... +.++...+.++.
T Consensus 280 G~~~~~il~~l~~~~~~~~ 298 (618)
T PRK14951 280 GLSAASTLEEMAAVLQRMA 298 (618)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 554433 344444444433
No 50
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=1.8e-17 Score=193.92 Aligned_cols=197 Identities=18% Similarity=0.250 Sum_probs=140.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCC--------------CceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIR--------------PYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~--------------~~~~ 525 (842)
+.++|.+..+..|..++.. +. .++.+||+||+|||||++++.+++.|.+.......+ ...+
T Consensus 16 ddIIGQe~Iv~~LknaI~~----~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQ----QR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHh----CC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 5588999888877666543 32 467789999999999999999999998642110000 0123
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+++++.... +.......+ +.+... ...++..||||||+|.|....++.|+.+|+.
T Consensus 91 iEidAas~~------------------kVDdIReLi-e~v~~~----P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-- 145 (944)
T PRK14949 91 IEVDAASRT------------------KVDDTRELL-DNVQYR----PSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-- 145 (944)
T ss_pred EEecccccc------------------CHHHHHHHH-HHHHhh----hhcCCcEEEEEechHhcCHHHHHHHHHHHhc--
Confidence 344432211 112222222 222111 1124678999999999988889999999985
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
+...+.||++++. +..+.+.|+||| .++.|.+++.+++.++|.+++...+ .++++++++|++. ..|++|.
T Consensus 146 -PP~~vrFILaTTe---~~kLl~TIlSRC--q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~---S~Gd~R~ 216 (944)
T PRK14949 146 -PPEHVKFLLATTD---PQKLPVTVLSRC--LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKA---ANGSMRD 216 (944)
T ss_pred -cCCCeEEEEECCC---chhchHHHHHhh--eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHH
Confidence 3567777777766 467888999999 5699999999999999999887544 6888999998766 4899999
Q ss_pred HHHHHHHHHHH
Q 003175 685 ALEICRRAAEI 695 (842)
Q Consensus 685 al~ll~~A~~~ 695 (842)
|+++|.+++..
T Consensus 217 ALnLLdQala~ 227 (944)
T PRK14949 217 ALSLTDQAIAF 227 (944)
T ss_pred HHHHHHHHHHh
Confidence 99999887743
No 51
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.77 E-value=4e-18 Score=189.74 Aligned_cols=224 Identities=22% Similarity=0.294 Sum_probs=157.9
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHHhhcCC-------cccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEE
Q 003175 455 LATLPKFLPCRNKEMEDITAFIKGATCDD-------QCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVE 527 (842)
Q Consensus 455 ~~~~p~~L~gRe~e~~~l~~~l~~~i~~~-------~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~ 527 (842)
+.+.++.+.|+++++++|..++...+... ..++.+++|+||||||||++++++++++. ..++.
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~----------~~~~~ 186 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN----------ATFIR 186 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC----------CCEEe
Confidence 34455678899999999999887654431 22467899999999999999999999876 34666
Q ss_pred EecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHH
Q 003175 528 VNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSV 596 (842)
Q Consensus 528 in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~ 596 (842)
+.+..+. ....| .....+...|..+. ...|+||||||+|.|.... +..
T Consensus 187 v~~~~l~----------~~~~g------~~~~~i~~~f~~a~-----~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~ 245 (364)
T TIGR01242 187 VVGSELV----------RKYIG------EGARLVREIFELAK-----EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRT 245 (364)
T ss_pred cchHHHH----------HHhhh------HHHHHHHHHHHHHH-----hcCCcEEEhhhhhhhccccccCCCCccHHHHHH
Confidence 6543321 11111 12233444454332 1367899999999996432 245
Q ss_pred HHHhhcCCC--CCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHH
Q 003175 597 LYNILDWPT--KPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFAS 672 (842)
Q Consensus 597 L~~ll~~~~--~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia 672 (842)
|..++.... ....++.||++||.+ +.+++.+.+ ||. +.|.|++|+.+++.+|++.++.......+..++.++
T Consensus 246 l~~ll~~ld~~~~~~~v~vI~ttn~~---~~ld~al~r~grfd-~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la 321 (364)
T TIGR01242 246 LMQLLAELDGFDPRGNVKVIAATNRP---DILDPALLRPGRFD-RIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIA 321 (364)
T ss_pred HHHHHHHhhCCCCCCCEEEEEecCCh---hhCChhhcCcccCc-eEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHH
Confidence 666654321 224579999999985 567777765 887 589999999999999999988765443334467777
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHH
Q 003175 673 RKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEM 729 (842)
Q Consensus 673 ~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~ 729 (842)
+.+.+++| |++ .+|+.|+..|..+ +...|+.+||..|+..+
T Consensus 322 ~~t~g~sg~dl~---~l~~~A~~~a~~~-------------~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 322 KMTEGASGADLK---AICTEAGMFAIRE-------------ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHcCCCCHHHHH---HHHHHHHHHHHHh-------------CCCccCHHHHHHHHHHh
Confidence 77776666 454 5899999999766 35689999999999864
No 52
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.5e-18 Score=168.47 Aligned_cols=195 Identities=25% Similarity=0.358 Sum_probs=144.1
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
+++++|+|||||||||.|++++++... ..|+.++|+.+.. ...|. .-.++.++|
T Consensus 188 pprgvllygppg~gktml~kava~~t~----------a~firvvgsefvq----------kylge------gprmvrdvf 241 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHTT----------AAFIRVVGSEFVQ----------KYLGE------GPRMVRDVF 241 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhccc----------hheeeeccHHHHH----------HHhcc------CcHHHHHHH
Confidence 589999999999999999999999876 4599999876431 11132 124566777
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhhcCC--CCCCCcEEEEEEeCCCCCccccchhhhc
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNILDWP--TKPNSKLIVIGIANTMDLPEKLLPRISS 632 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll~~~--~~~~~~vivI~~tn~~dl~~~l~~~l~s 632 (842)
.-++ .+.|.||||||+|.+++++ |.+|..|++.+ .....+|-||.+||+- +.++|.+.+
T Consensus 242 rlak-----enapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnra---dtldpallr 313 (408)
T KOG0727|consen 242 RLAK-----ENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRA---DTLDPALLR 313 (408)
T ss_pred HHHh-----ccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcc---cccCHhhcC
Confidence 6553 3689999999999999865 45677666543 2456789999999984 667887775
Q ss_pred --cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 003175 633 --RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKNS 709 (842)
Q Consensus 633 --R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~ 709 (842)
|+. +.|.||.++..|.+-++.....+...-++..++-+...-...+| |+ ..+|+.|...|.+++
T Consensus 314 pgrld-rkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi---~aicqeagm~avr~n--------- 380 (408)
T KOG0727|consen 314 PGRLD-RKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADI---NAICQEAGMLAVREN--------- 380 (408)
T ss_pred Ccccc-ccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhH---HHHHHHHhHHHHHhc---------
Confidence 677 78999999999999998888877665555555433322333444 33 359999999998773
Q ss_pred CCcCCCcccHHHHHHHHHHHhh
Q 003175 710 ASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 710 ~~~~~~~It~~dv~~A~~~~~~ 731 (842)
.-.|...||++|......
T Consensus 381 ----ryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 381 ----RYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred ----ceeeeHHHHHHHHHhhcC
Confidence 578999999999876543
No 53
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=2.9e-17 Score=188.37 Aligned_cols=263 Identities=17% Similarity=0.231 Sum_probs=177.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC--------------CCCceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS--------------IRPYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~--------------~~~~~~ 525 (842)
+.++|.+..++.|..++. .+. ..+++||+||+|||||++++.+++.+.+...... .....+
T Consensus 16 ~dIiGQe~v~~~L~~ai~----~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQ----ENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred HHhcCCHHHHHHHHHHHH----cCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 446787776666665554 332 4678999999999999999999999986421100 011235
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
++|++...... .+. +.|.+.+... ...+...||||||+|.|....++.|+..++.
T Consensus 91 ~eId~a~~~~I------------------d~i-R~L~~~~~~~----p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE-- 145 (624)
T PRK14959 91 VEIDGASNRGI------------------DDA-KRLKEAIGYA----PMEGRYKVFIIDEAHMLTREAFNALLKTLEE-- 145 (624)
T ss_pred EEEecccccCH------------------HHH-HHHHHHHHhh----hhcCCceEEEEEChHhCCHHHHHHHHHHhhc--
Confidence 55654322211 111 1222222211 1123568999999999987777888888874
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
+...++||++|+. +..+.+.|+||+. .|.|.+++.+++.++|...+...+ .+++++++++++.. .||+|+
T Consensus 146 -P~~~~ifILaTt~---~~kll~TI~SRcq--~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s---~GdlR~ 216 (624)
T PRK14959 146 -PPARVTFVLATTE---PHKFPVTIVSRCQ--HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRA---AGSVRD 216 (624)
T ss_pred -cCCCEEEEEecCC---hhhhhHHHHhhhh--ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---CCCHHH
Confidence 3457888888876 4677788999995 599999999999999999887665 58999999988764 799999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHHHHHcCCcce
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYELYKTGMGET 764 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~~~~~g~~~~ 764 (842)
|++++.+++. . +...|+.++|..++.........+.+..+...+...++.++..+.+.|....
T Consensus 217 Al~lLeqll~--~---------------g~~~It~d~V~~~lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll~~g~d~~ 279 (624)
T PRK14959 217 SMSLLGQVLA--L---------------GESRLTIDGARGVLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMG 279 (624)
T ss_pred HHHHHHHHHH--h---------------cCCCcCHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHH
Confidence 9999987642 1 2347999999988865544445566666655555555555555555554433
Q ss_pred -eHHHHHHHHHHHHh
Q 003175 765 -NFEKLAMTVSSLCT 778 (842)
Q Consensus 765 -~~~~v~~~y~~~~~ 778 (842)
.+..++..|+.+..
T Consensus 280 ~iL~~Ll~~~RdLLl 294 (624)
T PRK14959 280 FFLRELVATWRNLFM 294 (624)
T ss_pred HHHHHHHHHHHHHHH
Confidence 36677777776553
No 54
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=6.2e-18 Score=188.41 Aligned_cols=294 Identities=21% Similarity=0.259 Sum_probs=206.4
Q ss_pred cceeecccCCccchhhccCchhhhhccccCCCCCccccccccccCCCCCCCCCCccccccCCcccccccccc---ccccc
Q 003175 357 HSFKRIADIDKEEEVEDADSDEDWKSSKAADSDTDEDMEFEDEDGKHLHTGPSPAHELAANSQRGRFFGLQK---IGRKR 433 (842)
Q Consensus 357 ~~fk~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 433 (842)
+++|.|+...+.+.++.+..++.+..+......++...+...++..+++....++.+ |.+.. -|...
T Consensus 320 eQlk~IKkeLg~e~Ddkd~~~~~~~er~~~~~~P~~v~kv~~eEl~kL~~le~~~sE----------fnvtrNYLdwlt~ 389 (906)
T KOG2004|consen 320 EQLKAIKKELGIEKDDKDALVEKFRERIKSLKMPDHVLKVIDEELTKLKLLEPSSSE----------FNVTRNYLDWLTS 389 (906)
T ss_pred HHHHHHHHhhCCCccchhhHHHHHHHHhhhccCcHHHHHHHHHHHHHHhccCccccc----------hhHHHHHHHHHHh
Confidence 456666655544333332234556666666777888888888888888777666554 33322 23457
Q ss_pred cCcccccCcccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 434 IPEHVRCHKQTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 434 ~p~~~~~~~~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+||........++..|++.|..++. |.++..++|.+||.-..-.+...|..++|+||||+|||++++.||+.|++
T Consensus 390 LPWgk~S~En~dl~~Ak~iLdeDHY-----gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR 464 (906)
T KOG2004|consen 390 LPWGKSSTENLDLARAKEILDEDHY-----GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR 464 (906)
T ss_pred CCCCCCChhhhhHHHHHHhhccccc-----chHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC
Confidence 8998887888899999999998776 99999999999998766666556899999999999999999999999996
Q ss_pred HhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHH-HHHHHHhhcccCCCCCCCCcEEEEEecCcccccC
Q 003175 514 EVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKAL-HSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR 592 (842)
Q Consensus 514 ~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~-~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~ 592 (842)
+ |+.++-..+++. ..+.||+.+|-.++ ..+.+.+... .-...+++|||+|.+...
T Consensus 465 k----------FfRfSvGG~tDv--------AeIkGHRRTYVGAMPGkiIq~LK~v------~t~NPliLiDEvDKlG~g 520 (906)
T KOG2004|consen 465 K----------FFRFSVGGMTDV--------AEIKGHRRTYVGAMPGKIIQCLKKV------KTENPLILIDEVDKLGSG 520 (906)
T ss_pred c----------eEEEeccccccH--------HhhcccceeeeccCChHHHHHHHhh------CCCCceEEeehhhhhCCC
Confidence 5 677666665554 23568886654332 2222222222 124578899999999864
Q ss_pred C----hHHHHHhhcCCCC------------CCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHH
Q 003175 593 N----QSVLYNILDWPTK------------PNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSR 656 (842)
Q Consensus 593 ~----~~~L~~ll~~~~~------------~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~ 656 (842)
. ..+|+.+||-.++ .-++|.||+++|.+ +.+.+.|++|+. .|.++.|..+|-.+|..++
T Consensus 521 ~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~i---dtIP~pLlDRME--vIelsGYv~eEKv~IA~~y 595 (906)
T KOG2004|consen 521 HQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVI---DTIPPPLLDRME--VIELSGYVAEEKVKIAERY 595 (906)
T ss_pred CCCChHHHHHHhcChhhccchhhhccccccchhheEEEEecccc---ccCChhhhhhhh--eeeccCccHHHHHHHHHHh
Confidence 3 4788888873322 23789999999984 778899999996 4999999999999999998
Q ss_pred hcC-------c----ccCcHHHHHHHHHHHHHHhc--CHHH-HHHHHHHHHH
Q 003175 657 LKG-------I----EAFEKQAIEFASRKVAAISG--DARR-ALEICRRAAE 694 (842)
Q Consensus 657 l~~-------~----~~~~~~~l~~ia~~~~~~~G--d~R~-al~ll~~A~~ 694 (842)
|-. + -.++++++..+.+.+...+| ++.+ .-.+||.++.
T Consensus 596 Lip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~Al 647 (906)
T KOG2004|consen 596 LIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICRKVAL 647 (906)
T ss_pred hhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 842 1 14666666555444444444 4433 3346666553
No 55
>CHL00176 ftsH cell division protein; Validated
Probab=99.75 E-value=1.9e-17 Score=193.36 Aligned_cols=223 Identities=19% Similarity=0.308 Sum_probs=156.1
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcC------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 458 LPKFLPCRNKEMEDITAFIKGATCD------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 458 ~p~~L~gRe~e~~~l~~~l~~~i~~------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
..+.+.|.++..+++.+.+...... +...+.++||+||||||||+++++++.++. .++++++|.
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~----------~p~i~is~s 250 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE----------VPFFSISGS 250 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC----------CCeeeccHH
Confidence 3455777777766666655332111 122467899999999999999999998875 568999887
Q ss_pred cCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHh
Q 003175 532 KLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNI 600 (842)
Q Consensus 532 ~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~l 600 (842)
.+... ..| .....+...|..+.. ..|+||||||+|.|...+ +..|+.+
T Consensus 251 ~f~~~----------~~g------~~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~L 309 (638)
T CHL00176 251 EFVEM----------FVG------VGAARVRDLFKKAKE-----NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQL 309 (638)
T ss_pred HHHHH----------hhh------hhHHHHHHHHHHHhc-----CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHH
Confidence 64321 111 112344555655432 478999999999996421 3456776
Q ss_pred hcCCC--CCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHH
Q 003175 601 LDWPT--KPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVA 676 (842)
Q Consensus 601 l~~~~--~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~ 676 (842)
+.... .....++||++||.+ +.+++++.+ ||+ +.|.|++|+.+++.+||+.++......++..+..+++.+.
T Consensus 310 L~~~dg~~~~~~ViVIaaTN~~---~~LD~ALlRpGRFd-~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~ 385 (638)
T CHL00176 310 LTEMDGFKGNKGVIVIAATNRV---DILDAALLRPGRFD-RQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTP 385 (638)
T ss_pred HhhhccccCCCCeeEEEecCch---HhhhhhhhccccCc-eEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCC
Confidence 64331 235679999999984 567777775 788 6899999999999999999998755556667777777664
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHh
Q 003175 677 AISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMF 730 (842)
Q Consensus 677 ~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~ 730 (842)
+++ .+.+.++|+.|+..|.++ +...|+.+||..|+..+.
T Consensus 386 G~s--gaDL~~lvneAal~a~r~-------------~~~~It~~dl~~Ai~rv~ 424 (638)
T CHL00176 386 GFS--GADLANLLNEAAILTARR-------------KKATITMKEIDTAIDRVI 424 (638)
T ss_pred CCC--HHHHHHHHHHHHHHHHHh-------------CCCCcCHHHHHHHHHHHH
Confidence 433 334446888888877655 356799999999998763
No 56
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=1.2e-16 Score=185.55 Aligned_cols=212 Identities=18% Similarity=0.226 Sum_probs=151.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC--------------CCCceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS--------------IRPYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~--------------~~~~~~ 525 (842)
+.++|++...+.|...+.. +. .++.+||+||+|||||++++.+++.+.+...... .....+
T Consensus 16 ~~viGq~~v~~~L~~~i~~----~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv 90 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQ----GK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDV 90 (559)
T ss_pred HhccCcHHHHHHHHHHHHc----CC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 5688999887777666654 32 4778899999999999999999999986432111 111345
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+++++..... ..+..+.+.... .....+...|+||||+|.|....++.|+..++.
T Consensus 91 ~eidaas~~~------------------vd~ir~i~~~v~-----~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe-- 145 (559)
T PRK05563 91 IEIDAASNNG------------------VDEIRDIRDKVK-----YAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE-- 145 (559)
T ss_pred EEeeccccCC------------------HHHHHHHHHHHh-----hCcccCCeEEEEEECcccCCHHHHHHHHHHhcC--
Confidence 5555533221 122222222211 112234678999999999988778888888874
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
+...++||++++. +..+.+.++||+. .+.|.+++.+++.++|...++..+ .+++++++++++. ..||+|.
T Consensus 146 -pp~~~ifIlatt~---~~ki~~tI~SRc~--~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~---s~G~~R~ 216 (559)
T PRK05563 146 -PPAHVIFILATTE---PHKIPATILSRCQ--RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARA---AEGGMRD 216 (559)
T ss_pred -CCCCeEEEEEeCC---hhhCcHHHHhHhe--EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHH
Confidence 4567788877765 4788899999995 699999999999999999998666 6888999988875 4799999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHH
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQ 727 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~ 727 (842)
|++++.++...+ ...|+.++|.+++.
T Consensus 217 al~~Ldq~~~~~-----------------~~~It~~~V~~vlg 242 (559)
T PRK05563 217 ALSILDQAISFG-----------------DGKVTYEDALEVTG 242 (559)
T ss_pred HHHHHHHHHHhc-----------------cCCCCHHHHHHHhC
Confidence 999999887643 13477777666544
No 57
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.75 E-value=1.1e-17 Score=193.43 Aligned_cols=193 Identities=25% Similarity=0.413 Sum_probs=138.1
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
.++++||+||||||||++++++++++. .+++++++..+.+ ...|. ....+...|
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~----------~~~~~i~~~~~~~----------~~~g~------~~~~l~~~f 140 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAG----------VPFFSISGSDFVE----------MFVGV------GASRVRDLF 140 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcC----------CCeeeccHHHHHH----------HHhcc------cHHHHHHHH
Confidence 467899999999999999999998865 5688888664321 11121 123455556
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCCh-----------HHHHHh---hcCCCCCCCcEEEEEEeCCCCCccccchhhh
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRNQ-----------SVLYNI---LDWPTKPNSKLIVIGIANTMDLPEKLLPRIS 631 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~~-----------~~L~~l---l~~~~~~~~~vivI~~tn~~dl~~~l~~~l~ 631 (842)
..+.. ..|+||||||+|.+....+ ..+..+ ++.. .....++||++||. ++.+++.+.
T Consensus 141 ~~a~~-----~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~-~~~~~v~vI~aTn~---~~~ld~al~ 211 (495)
T TIGR01241 141 EQAKK-----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF-GTNTGVIVIAATNR---PDVLDPALL 211 (495)
T ss_pred HHHHh-----cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc-cCCCCeEEEEecCC---hhhcCHHHh
Confidence 55432 3679999999999975421 233333 3433 23557999999998 467888887
Q ss_pred c--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 003175 632 S--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKN 708 (842)
Q Consensus 632 s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~ 708 (842)
+ ||. +.|.|+.|+.+++.+|++.++.......+..++.++..+.+++| |++ .+|+.|+..|.++
T Consensus 212 r~gRfd-~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~---~l~~eA~~~a~~~--------- 278 (495)
T TIGR01241 212 RPGRFD-RQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLA---NLLNEAALLAARK--------- 278 (495)
T ss_pred cCCcce-EEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHc---------
Confidence 6 888 68999999999999999999886544345556677777665554 554 5788888777654
Q ss_pred cCCcCCCcccHHHHHHHHHHHh
Q 003175 709 SASVGKSLVGMADVEAAIQEMF 730 (842)
Q Consensus 709 ~~~~~~~~It~~dv~~A~~~~~ 730 (842)
+...|+.+||..|+..+.
T Consensus 279 ----~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 279 ----NKTEITMNDIEEAIDRVI 296 (495)
T ss_pred ----CCCCCCHHHHHHHHHHHh
Confidence 246799999999998764
No 58
>PLN03025 replication factor C subunit; Provisional
Probab=99.75 E-value=1.9e-16 Score=173.08 Aligned_cols=190 Identities=21% Similarity=0.244 Sum_probs=134.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.+.|.++.++.|..++. ++. ..++||+||||||||++++++++++..... ...++++|+........+
T Consensus 13 ~~~~g~~~~~~~L~~~~~----~~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd~~~~~~v 81 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIAR----DGN--MPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASDDRGIDVV 81 (319)
T ss_pred HHhcCcHHHHHHHHHHHh----cCC--CceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeecccccccHHHH
Confidence 347788887777766554 333 356999999999999999999999864311 134778887654433222
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
...+. .|..... ....+...||||||+|.|....|+.|+.+++.+. ....||.++|.
T Consensus 82 r~~i~-------------------~~~~~~~-~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~---~~t~~il~~n~ 138 (319)
T PLN03025 82 RNKIK-------------------MFAQKKV-TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS---NTTRFALACNT 138 (319)
T ss_pred HHHHH-------------------HHHhccc-cCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc---CCceEEEEeCC
Confidence 11111 1111100 0011356899999999999888999999998542 22335556775
Q ss_pred CCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 003175 620 MDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRR 691 (842)
Q Consensus 620 ~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~ 691 (842)
...+.+.++||+. .+.|++++.+++..+|...++..+ .++++++++++.. ..||+|.+++.++.
T Consensus 139 ---~~~i~~~L~SRc~--~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~---~~gDlR~aln~Lq~ 203 (319)
T PLN03025 139 ---SSKIIEPIQSRCA--IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFT---ADGDMRQALNNLQA 203 (319)
T ss_pred ---ccccchhHHHhhh--cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHH
Confidence 4577889999995 599999999999999999987665 6788888887655 58999999999983
No 59
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.74 E-value=2.1e-17 Score=185.22 Aligned_cols=274 Identities=15% Similarity=0.215 Sum_probs=185.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
..++|.+.....|...|.. +. ..++.+|+||.|||||+++|.+++.|++..+... ..+-...+|..+..- ..
T Consensus 16 ~evvGQe~v~~~L~nal~~----~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~--ePC~~C~~Ck~I~~g-~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALEN----GR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTA--EPCGKCISCKEINEG-SL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHh----Cc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCC--CcchhhhhhHhhhcC-Cc
Confidence 3467877766666555544 43 5788999999999999999999999998642111 111122222222111 00
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
.. +.+.-.....+.++.++.+++..- ....+++.|++|||+|+|.....+.|+..++. +..+|+||.+|..
T Consensus 88 ~D-viEiDaASn~gVddiR~i~e~v~y-----~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE---PP~hV~FIlATTe 158 (515)
T COG2812 88 ID-VIEIDAASNTGVDDIREIIEKVNY-----APSEGRYKVYIIDEVHMLSKQAFNALLKTLEE---PPSHVKFILATTE 158 (515)
T ss_pred cc-chhhhhhhccChHHHHHHHHHhcc-----CCccccceEEEEecHHhhhHHHHHHHhccccc---CccCeEEEEecCC
Confidence 00 000000111234455555554432 33457889999999999999888999998884 5778999988877
Q ss_pred CCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 003175 620 MDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADY 698 (842)
Q Consensus 620 ~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~ 698 (842)
+.++...+.|||. ++.|..++.+++...|...+...+ .++++++.++++. ..|.+|.++.++.+|.....
T Consensus 159 ---~~Kip~TIlSRcq--~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~---a~Gs~RDalslLDq~i~~~~- 229 (515)
T COG2812 159 ---PQKIPNTILSRCQ--RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARA---AEGSLRDALSLLDQAIAFGE- 229 (515)
T ss_pred ---cCcCchhhhhccc--cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH---cCCChhhHHHHHHHHHHccC-
Confidence 5889999999994 699999999999999999998766 7899999998876 48999999999999987642
Q ss_pred HHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHHHHHcCCccee-HHHHHHHHHH
Q 003175 699 RIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYELYKTGMGETN-FEKLAMTVSS 775 (842)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~~~~~g~~~~~-~~~v~~~y~~ 775 (842)
..|+.+.|..++..+-......++..+-..+...+...+..+...|.++.. +.++...+..
T Consensus 230 ----------------~~It~~~v~~~lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~ 291 (515)
T COG2812 230 ----------------GEITLESVRDMLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRD 291 (515)
T ss_pred ----------------CcccHHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 468888888777655544445555554444444444455555566655443 4555555544
No 60
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.74 E-value=6.8e-17 Score=171.50 Aligned_cols=211 Identities=18% Similarity=0.157 Sum_probs=139.6
Q ss_pred CCCCcHHHHHHHHHHHHHhh-------cC--CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 461 FLPCRNKEMEDITAFIKGAT-------CD--DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i-------~~--~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
.|+|.++..++|...+.... .+ ......+++|+||||||||++|+.+++.+... +.++...++++++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~---~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM---NVLSKGHLIEVERA 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc---CcccCCceEEecHH
Confidence 36677776666665433221 11 11125689999999999999999999998642 22233457788776
Q ss_pred cCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----hHHHHHhhcCCCC
Q 003175 532 KLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----QSVLYNILDWPTK 606 (842)
Q Consensus 532 ~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----~~~L~~ll~~~~~ 606 (842)
.+.+. ..|. ....+.+.|..+ ...||||||+|.|.... .+.+..++.....
T Consensus 84 ~l~~~----------~~g~------~~~~~~~~~~~a--------~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~ 139 (261)
T TIGR02881 84 DLVGE----------YIGH------TAQKTREVIKKA--------LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED 139 (261)
T ss_pred Hhhhh----------hccc------hHHHHHHHHHhc--------cCCEEEEechhhhccCCccchHHHHHHHHHHHHhc
Confidence 53321 1121 122334445433 23699999999997422 2345555554434
Q ss_pred CCCcEEEEEEeCCC--CCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHH------
Q 003175 607 PNSKLIVIGIANTM--DLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAA------ 677 (842)
Q Consensus 607 ~~~~vivI~~tn~~--dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~------ 677 (842)
....+++|+++... +....+++.+.+||. ..|.|++|+.+++.+|++..+...+ .++++++++++..+..
T Consensus 140 ~~~~~~vila~~~~~~~~~~~~~p~L~sRf~-~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 218 (261)
T TIGR02881 140 NRNEFVLILAGYSDEMDYFLSLNPGLRSRFP-ISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSS 218 (261)
T ss_pred cCCCEEEEecCCcchhHHHHhcChHHHhccc-eEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccC
Confidence 45667777665442 233456789999996 5899999999999999999987654 5888899888766543
Q ss_pred -HhcCHHHHHHHHHHHHHHHHHH
Q 003175 678 -ISGDARRALEICRRAAEIADYR 699 (842)
Q Consensus 678 -~~Gd~R~al~ll~~A~~~A~~~ 699 (842)
..||+|.+.+++..|......+
T Consensus 219 ~~~gn~R~~~n~~e~a~~~~~~r 241 (261)
T TIGR02881 219 REFSNARYVRNIIEKAIRRQAVR 241 (261)
T ss_pred CCCchHHHHHHHHHHHHHHHHHH
Confidence 2589999999998888765444
No 61
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.4e-16 Score=183.83 Aligned_cols=213 Identities=18% Similarity=0.229 Sum_probs=149.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCC--------------CceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIR--------------PYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~--------------~~~~ 525 (842)
+.++|.+..++.|..++.. +. .++.+||+||+|+|||++++.+++.+.+.......+ ...+
T Consensus 16 ~divGq~~v~~~L~~~i~~----~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQ----QR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHc----CC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 4578998888877766653 32 467789999999999999999999997642111000 1134
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+++++.... +..+..+.+..... ....++..|+||||+|.|....++.|+..++.
T Consensus 91 ~ei~~~~~~------------------~vd~ir~l~~~~~~-----~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe-- 145 (527)
T PRK14969 91 IEVDAASNT------------------QVDAMRELLDNAQY-----APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-- 145 (527)
T ss_pred eEeeccccC------------------CHHHHHHHHHHHhh-----CcccCCceEEEEcCcccCCHHHHHHHHHHHhC--
Confidence 455443211 12222222222111 11234678999999999988778888888874
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
+...++||++|+. +..+.+.++|||. .+.|.+++.+++.+.|...+...+ .+++++++++++. ..||+|.
T Consensus 146 -pp~~~~fIL~t~d---~~kil~tI~SRc~--~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~---s~Gslr~ 216 (527)
T PRK14969 146 -PPEHVKFILATTD---PQKIPVTVLSRCL--QFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARA---AAGSMRD 216 (527)
T ss_pred -CCCCEEEEEEeCC---hhhCchhHHHHHH--HHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHH
Confidence 3557778878876 4677778999994 599999999999999999887554 6788888888776 4899999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHH
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQE 728 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~ 728 (842)
+++++.+++... ...|+.++|..++..
T Consensus 217 al~lldqai~~~-----------------~~~I~~~~v~~~~~~ 243 (527)
T PRK14969 217 ALSLLDQAIAYG-----------------GGTVNESEVRAMLGA 243 (527)
T ss_pred HHHHHHHHHHhc-----------------CCCcCHHHHHHHHCC
Confidence 999999887642 245777777776653
No 62
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2e-17 Score=164.38 Aligned_cols=196 Identities=21% Similarity=0.367 Sum_probs=149.8
Q ss_pred ccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003175 485 CLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNER 564 (842)
Q Consensus 485 ~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~ 564 (842)
.++.++|+|||||||||.++++|++... ..|+.+-++.+. +...| +....+.+.
T Consensus 209 dppkgvllygppgtgktl~aravanrtd----------acfirvigselv----------qkyvg------egarmvrel 262 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANRTD----------ACFIRVIGSELV----------QKYVG------EGARMVREL 262 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhcccC----------ceEEeehhHHHH----------HHHhh------hhHHHHHHH
Confidence 3578999999999999999999999765 678888765432 22222 334566777
Q ss_pred hhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhhcCC--CCCCCcEEEEEEeCCCCCccccchhhh
Q 003175 565 FLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNILDWP--TKPNSKLIVIGIANTMDLPEKLLPRIS 631 (842)
Q Consensus 565 f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll~~~--~~~~~~vivI~~tn~~dl~~~l~~~l~ 631 (842)
|.-++ .++.||||+||+|.+...+ |..++.|++.. ..+..++-|+.+||++ +.|+|.|.
T Consensus 263 f~mar-----tkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrp---dtldpall 334 (435)
T KOG0729|consen 263 FEMAR-----TKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRP---DTLDPALL 334 (435)
T ss_pred HHHhc-----ccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCC---CCcCHhhc
Confidence 76543 3467999999999998643 34455554322 3567889999999995 66777776
Q ss_pred c--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 003175 632 S--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKN 708 (842)
Q Consensus 632 s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~ 708 (842)
+ |+. +.+.|..++.+.+..|++-+.+....-.+--.+++++++.++.| ++| .+|-.|.+.|.+..
T Consensus 335 rpgrld-rkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeir---svcteagmfairar-------- 402 (435)
T KOG0729|consen 335 RPGRLD-RKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIR---SVCTEAGMFAIRAR-------- 402 (435)
T ss_pred CCcccc-cceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHH---HHHHHhhHHHHHHH--------
Confidence 5 676 78999999999999999988877665566667999999988888 566 48999999998764
Q ss_pred cCCcCCCcccHHHHHHHHHHHhh
Q 003175 709 SASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 709 ~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
....|..||..|++++..
T Consensus 403 -----rk~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 403 -----RKVATEKDFLDAVNKVVK 420 (435)
T ss_pred -----hhhhhHHHHHHHHHHHHH
Confidence 457899999999988754
No 63
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.73 E-value=6.6e-17 Score=195.49 Aligned_cols=210 Identities=21% Similarity=0.295 Sum_probs=148.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
.+.++|||||||||||++++++++++. ..|+.+++..+.+. ..| +....+.+.|
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~----------~~fi~v~~~~l~~~----------~vG------ese~~i~~~f 539 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESG----------ANFIAVRGPEILSK----------WVG------ESEKAIREIF 539 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcC----------CCEEEEehHHHhhc----------ccC------cHHHHHHHHH
Confidence 467899999999999999999999886 56898887654321 112 2334566667
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCC---------hHH---HHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc-
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRN---------QSV---LYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS- 632 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~---------~~~---L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s- 632 (842)
..+.. ..|+||||||+|.|...+ +.+ |+..++.. ....+++|||+||++ +.+++.+.+
T Consensus 540 ~~A~~-----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~-~~~~~v~vI~aTn~~---~~ld~allRp 610 (733)
T TIGR01243 540 RKARQ-----AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGI-QELSNVVVIAATNRP---DILDPALLRP 610 (733)
T ss_pred HHHHh-----cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcc-cCCCCEEEEEeCCCh---hhCCHhhcCC
Confidence 65543 368999999999997542 122 44444432 245689999999984 678888875
Q ss_pred -cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhcc-----C
Q 003175 633 -RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTS-----N 706 (842)
Q Consensus 633 -R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~-----~ 706 (842)
||+ ..|.|++|+.+++.+|++.++.+.+.-++..++.+++.+.+++|..-. .+|+.|+..|..+...... .
T Consensus 611 gRfd-~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~--~~~~~A~~~a~~~~~~~~~~~~~~~ 687 (733)
T TIGR01243 611 GRFD-RLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIE--AVCREAAMAALRESIGSPAKEKLEV 687 (733)
T ss_pred Cccc-eEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHH--HHHHHHHHHHHHHHhhhccchhhhc
Confidence 998 689999999999999999888876655555678888888877773322 4899999988776432111 0
Q ss_pred CCcCCcCCCcccHHHHHHHHHHHhhCh
Q 003175 707 KNSASVGKSLVGMADVEAAIQEMFQAP 733 (842)
Q Consensus 707 ~~~~~~~~~~It~~dv~~A~~~~~~~~ 733 (842)
..........|+.+||..|+..+..+.
T Consensus 688 ~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 688 GEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred ccccccccCcccHHHHHHHHHHcCCCC
Confidence 000011234799999999998776653
No 64
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.2e-17 Score=167.89 Aligned_cols=195 Identities=25% Similarity=0.345 Sum_probs=139.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
++.++++||+||||||.||++|+++.. ..|+.+-++.+ |...+ |. .-++++++|
T Consensus 218 pPKGVIlyG~PGTGKTLLAKAVANqTS----------ATFlRvvGseL---------iQkyl-Gd------GpklvRqlF 271 (440)
T KOG0726|consen 218 PPKGVILYGEPGTGKTLLAKAVANQTS----------ATFLRVVGSEL---------IQKYL-GD------GPKLVRELF 271 (440)
T ss_pred CCCeeEEeCCCCCchhHHHHHHhcccc----------hhhhhhhhHHH---------HHHHh-cc------chHHHHHHH
Confidence 578999999999999999999999876 34666655432 22222 32 234555666
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhhcCC--CCCCCcEEEEEEeCCCCCccccchhhhc
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNILDWP--TKPNSKLIVIGIANTMDLPEKLLPRISS 632 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll~~~--~~~~~~vivI~~tn~~dl~~~l~~~l~s 632 (842)
.-+. ...|.|+||||||.+.+++ |..++.|++.. ......|-||.+||++ +.|+|.+.+
T Consensus 272 ~vA~-----e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnri---e~LDPaLiR 343 (440)
T KOG0726|consen 272 RVAE-----EHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRI---ETLDPALIR 343 (440)
T ss_pred HHHH-----hcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccc---cccCHhhcC
Confidence 5442 3478999999999999865 34455555432 2346789999999995 778888876
Q ss_pred --cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcC
Q 003175 633 --RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSA 710 (842)
Q Consensus 633 --R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~ 710 (842)
|++ +.|.|+.++......|+.-+......-.+..++.+.-.-...+|.--+| +|..|..+|.++.
T Consensus 344 PGrID-rKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkA--ictEaGllAlRer---------- 410 (440)
T KOG0726|consen 344 PGRID-RKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKA--ICTEAGLLALRER---------- 410 (440)
T ss_pred CCccc-cccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHH--HHHHHhHHHHHHH----------
Confidence 666 7899999999999999887776554444444544333334456744444 8999999998774
Q ss_pred CcCCCcccHHHHHHHHHHHh
Q 003175 711 SVGKSLVGMADVEAAIQEMF 730 (842)
Q Consensus 711 ~~~~~~It~~dv~~A~~~~~ 730 (842)
+..|+++||.+|...+.
T Consensus 411 ---Rm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 411 ---RMKVTMEDFKKAKEKVL 427 (440)
T ss_pred ---HhhccHHHHHHHHHHHH
Confidence 46799999999987664
No 65
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.73 E-value=1.8e-16 Score=179.19 Aligned_cols=252 Identities=17% Similarity=0.201 Sum_probs=164.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
.+.+||||++|+|||+|++++++++.... +...++|+++..+. ..+...+... ....+.+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~-----~~~~v~yi~~~~~~------~~~~~~~~~~------~~~~~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENN-----PNAKVVYVSSEKFT------NDFVNALRNN------KMEEFKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCcEEEEEHHHHH------HHHHHHHHcC------CHHHHHHHHH
Confidence 56799999999999999999999987542 12568899876542 2222222111 1122222222
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCC--hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCc-eeEEecC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRN--QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGV-QRLCFGP 643 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~--~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~-~~i~f~p 643 (842)
...+|+|||+|.+..+. +..|+.+++.....+. .+||++...+.....+++++.|||.. ..+.|++
T Consensus 199 ----------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~-~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~ 267 (405)
T TIGR00362 199 ----------SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGK-QIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEP 267 (405)
T ss_pred ----------hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCC-CEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCC
Confidence 23599999999997753 5678888875433333 34444444444455678899999974 5799999
Q ss_pred CCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccC------CCcCCcCCCc
Q 003175 644 YNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSN------KNSASVGKSL 716 (842)
Q Consensus 644 ~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~------~~~~~~~~~~ 716 (842)
|+.+++.+||+.++...+ .+++++++++++.+ .||+|.+..++.+....|.........+ ..........
T Consensus 268 pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~---~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~~~~~~~~ 344 (405)
T TIGR00362 268 PDLETRLAILQKKAEEEGLELPDEVLEFIAKNI---RSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLRAKKKE 344 (405)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCC
Confidence 999999999999998665 68999999988764 7889887777777666554332111000 0011123456
Q ss_pred ccHHHHHHHHHHHhhChHHHHHhhCchHHHHHH---HHHHHHHHHcCCcceeHHHHH
Q 003175 717 VGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFL---TAMVYELYKTGMGETNFEKLA 770 (842)
Q Consensus 717 It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL---~a~~~~~~~~g~~~~~~~~v~ 770 (842)
|+.++|.+++.+.++-...+ |.+.+....+.. +||+.....++.+...+|..|
T Consensus 345 it~~~I~~~Va~~~~v~~~~-l~~~~r~~~~~~~R~~amyl~~~~~~~s~~~ig~~f 400 (405)
T TIGR00362 345 ITIENIQEVVAKYYNIKVSD-LKSKKRTRNIVRPRQIAMYLAKELTDLSLPEIGRAF 400 (405)
T ss_pred CCHHHHHHHHHHHcCCCHHH-HhCCCCCcccchHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 89999999999888754444 445444433333 566665556666655555544
No 66
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=3.9e-16 Score=181.14 Aligned_cols=213 Identities=18% Similarity=0.203 Sum_probs=150.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC-CC-----------------
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS-IR----------------- 521 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~-~~----------------- 521 (842)
+.++|++..++.|...+.. +. .++++||+||+|+|||++++.+++.|.+...... .+
T Consensus 24 ~dliGq~~~v~~L~~~~~~----gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFET----GR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHc----CC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcC
Confidence 5588999888887777754 32 4788999999999999999999999986532211 00
Q ss_pred -CceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHh
Q 003175 522 -PYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNI 600 (842)
Q Consensus 522 -~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~l 600 (842)
...+++++..... +..+..+.+... ... .......||||||+|.|....++.|+..
T Consensus 99 ~h~Dv~e~~a~s~~------------------gvd~IReIie~~-~~~----P~~a~~KVvIIDEad~Ls~~a~naLLKt 155 (598)
T PRK09111 99 RHVDVLEMDAASHT------------------GVDDIREIIESV-RYR----PVSARYKVYIIDEVHMLSTAAFNALLKT 155 (598)
T ss_pred CCCceEEecccccC------------------CHHHHHHHHHHH-Hhc----hhcCCcEEEEEEChHhCCHHHHHHHHHH
Confidence 1123333322211 222322222221 111 1123568999999999988778888888
Q ss_pred hcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHh
Q 003175 601 LDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAIS 679 (842)
Q Consensus 601 l~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~ 679 (842)
++.+ ...++||++++.. +.+.+.|+||+ +.+.|.+++.+++..+|...++..+ .+++++++++++.+ .
T Consensus 156 LEeP---p~~~~fIl~tte~---~kll~tI~SRc--q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a---~ 224 (598)
T PRK09111 156 LEEP---PPHVKFIFATTEI---RKVPVTVLSRC--QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAA---E 224 (598)
T ss_pred HHhC---CCCeEEEEEeCCh---hhhhHHHHhhe--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---C
Confidence 8743 4567777777663 56778899999 4699999999999999999987665 68889998877764 7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHH
Q 003175 680 GDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQE 728 (842)
Q Consensus 680 Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~ 728 (842)
||+|.+++++.+++... ...|+.++|.+.+..
T Consensus 225 Gdlr~al~~Ldkli~~g-----------------~g~It~e~V~~llg~ 256 (598)
T PRK09111 225 GSVRDGLSLLDQAIAHG-----------------AGEVTAEAVRDMLGL 256 (598)
T ss_pred CCHHHHHHHHHHHHhhc-----------------CCCcCHHHHHHHhCC
Confidence 99999999998876432 235888888877653
No 67
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=2.8e-16 Score=179.56 Aligned_cols=197 Identities=16% Similarity=0.210 Sum_probs=140.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCC--------------CCceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSI--------------RPYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~--------------~~~~~ 525 (842)
+.++|.+..++.|...+.. +. .++.+||+||+|+|||++++.+++.+.+....... ....+
T Consensus 16 ~diiGq~~~v~~L~~~i~~----~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALET----QK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHc----CC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 4578999988887766653 32 35678999999999999999999998753211110 01235
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+++++..... ..+....+. .+... ...+...||||||+|.|....++.|+..++.
T Consensus 91 ieidaas~~g------------------vd~ir~ii~-~~~~~----p~~g~~kViIIDEa~~ls~~a~naLLK~LEe-- 145 (546)
T PRK14957 91 IEIDAASRTG------------------VEETKEILD-NIQYM----PSQGRYKVYLIDEVHMLSKQSFNALLKTLEE-- 145 (546)
T ss_pred EEeecccccC------------------HHHHHHHHH-HHHhh----hhcCCcEEEEEechhhccHHHHHHHHHHHhc--
Confidence 5555432221 111111121 11111 1123568999999999988888999999984
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
+...++||++|+. ...+.+.++||+ ..+.|.+++.+++.++|...+...+ .+++++++++++.. .||+|.
T Consensus 146 -pp~~v~fIL~Ttd---~~kil~tI~SRc--~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s---~GdlR~ 216 (546)
T PRK14957 146 -PPEYVKFILATTD---YHKIPVTILSRC--IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHA---KGSLRD 216 (546)
T ss_pred -CCCCceEEEEECC---hhhhhhhHHHhe--eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---CCCHHH
Confidence 3456777777765 467778899999 4699999999999999999887655 68899999877664 899999
Q ss_pred HHHHHHHHHHH
Q 003175 685 ALEICRRAAEI 695 (842)
Q Consensus 685 al~ll~~A~~~ 695 (842)
|++++..++..
T Consensus 217 alnlLek~i~~ 227 (546)
T PRK14957 217 ALSLLDQAISF 227 (546)
T ss_pred HHHHHHHHHHh
Confidence 99999988864
No 68
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.9e-17 Score=186.88 Aligned_cols=229 Identities=21% Similarity=0.329 Sum_probs=168.2
Q ss_pred ccccCcccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHh---hcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 437 HVRCHKQTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGA---TCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 437 ~~~~~~~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~---i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
.+.+.++.+...|++.| .++..+|++- ..-|...++++||+||||||||.||+++|.+.+
T Consensus 307 ~V~FkDVAG~deAK~El----------------~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg- 369 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEEL----------------MEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG- 369 (774)
T ss_pred CCccccccCcHHHHHHH----------------HHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-
Confidence 47788888888887544 4555555442 222444689999999999999999999999987
Q ss_pred HhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC
Q 003175 514 EVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN 593 (842)
Q Consensus 514 ~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~ 593 (842)
++|+.++++++.. .+.|. ....++++|..+++ ..|+||+|||||.+...+
T Consensus 370 ---------VPF~svSGSEFvE----------~~~g~------~asrvr~lf~~ar~-----~aP~iifideida~~~~r 419 (774)
T KOG0731|consen 370 ---------VPFFSVSGSEFVE----------MFVGV------GASRVRDLFPLARK-----NAPSIIFIDEIDAVGRKR 419 (774)
T ss_pred ---------CceeeechHHHHH----------Hhccc------chHHHHHHHHHhhc-----cCCeEEEecccccccccc
Confidence 8899999887543 22221 12456677776654 589999999999988654
Q ss_pred h------------HHHHHh---hcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHH
Q 003175 594 Q------------SVLYNI---LDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSR 656 (842)
Q Consensus 594 ~------------~~L~~l---l~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~ 656 (842)
. ..|.+| +|... ....|+|+++||++ +-|++++.+ ||+ +.|.+..++..++.+|+..+
T Consensus 420 ~G~~~~~~~~e~e~tlnQll~emDgf~-~~~~vi~~a~tnr~---d~ld~allrpGRfd-r~i~i~~p~~~~r~~i~~~h 494 (774)
T KOG0731|consen 420 GGKGTGGGQDEREQTLNQLLVEMDGFE-TSKGVIVLAATNRP---DILDPALLRPGRFD-RQIQIDLPDVKGRASILKVH 494 (774)
T ss_pred cccccCCCChHHHHHHHHHHHHhcCCc-CCCcEEEEeccCCc---cccCHHhcCCCccc-cceeccCCchhhhHHHHHHH
Confidence 1 234444 45443 45789999999996 456666665 888 78999999999999999999
Q ss_pred hcCccc-CcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhC
Q 003175 657 LKGIEA-FEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 657 l~~~~~-~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
+..... .++..+..++.++.+.+|+. ..++|..|+.+|.++ +...|+..|+..|+..+...
T Consensus 495 ~~~~~~~~e~~dl~~~a~~t~gf~gad--l~n~~neaa~~a~r~-------------~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 495 LRKKKLDDEDVDLSKLASLTPGFSGAD--LANLCNEAALLAARK-------------GLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred hhccCCCcchhhHHHHHhcCCCCcHHH--HHhhhhHHHHHHHHh-------------ccCccchhhHHHHHHHHhcc
Confidence 987653 34444444676766777744 247999999998876 36789999999999976654
No 69
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=3.2e-16 Score=182.28 Aligned_cols=197 Identities=19% Similarity=0.264 Sum_probs=139.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC-----------CCCceEEEE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS-----------IRPYCFVEV 528 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~-----------~~~~~~v~i 528 (842)
..++|.+..++.|...+.. +. .++++||+||+|+|||++|+.+++.+.+...... ...+.++++
T Consensus 18 ~dIiGQe~~v~~L~~aI~~----~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei 92 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKS----NK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM 92 (725)
T ss_pred HHhcCcHHHHHHHHHHHHc----CC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE
Confidence 4478988888777766653 32 4678899999999999999999999986432100 011223444
Q ss_pred ecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCC
Q 003175 529 NGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPN 608 (842)
Q Consensus 529 n~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~ 608 (842)
++.... +..+... |.+.+... ...+...|+||||+|.|....++.|+..++.+ .
T Consensus 93 daasn~------------------~vd~IRe-Lie~~~~~----P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP---P 146 (725)
T PRK07133 93 DAASNN------------------GVDEIRE-LIENVKNL----PTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP---P 146 (725)
T ss_pred eccccC------------------CHHHHHH-HHHHHHhc----hhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC---C
Confidence 432211 1122222 22222111 12246689999999999888888899888854 5
Q ss_pred CcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHH
Q 003175 609 SKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALE 687 (842)
Q Consensus 609 ~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ 687 (842)
..++||++++. ++.+.+.+.|||. ++.|.+++.+++.++|..++...+ .+++++++++++.+ .|++|.|+.
T Consensus 147 ~~tifILaTte---~~KLl~TI~SRcq--~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS---~GslR~Als 218 (725)
T PRK07133 147 KHVIFILATTE---VHKIPLTILSRVQ--RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLS---SGSLRDALS 218 (725)
T ss_pred CceEEEEEcCC---hhhhhHHHHhhce--eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---CCCHHHHHH
Confidence 57788878765 4688899999994 699999999999999999887655 67888888877664 799999999
Q ss_pred HHHHHHHH
Q 003175 688 ICRRAAEI 695 (842)
Q Consensus 688 ll~~A~~~ 695 (842)
++.++...
T Consensus 219 lLekl~~y 226 (725)
T PRK07133 219 IAEQVSIF 226 (725)
T ss_pred HHHHHHHh
Confidence 99887643
No 70
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.72 E-value=1.4e-16 Score=182.23 Aligned_cols=252 Identities=18% Similarity=0.216 Sum_probs=166.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
.+.+||||++|+|||+|++++++++.... +...++|+++..+.+ .+...+... ....+.+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~-----~~~~v~yi~~~~~~~------~~~~~~~~~------~~~~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN-----PNAKVVYVTSEKFTN------DFVNALRNN------TMEEFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHH------HHHHHHHcC------cHHHHHHHHh
Confidence 46799999999999999999999987542 236689998876532 222222110 1122222222
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCC--hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCc-eeEEecC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRN--QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGV-QRLCFGP 643 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~--~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~-~~i~f~p 643 (842)
...+|+|||+|.+..+. +..|+.+|+.....+ +.+||++...+.....+++++.|||.. ..+.|.+
T Consensus 211 ----------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~-~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~ 279 (450)
T PRK00149 211 ----------SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAG-KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEP 279 (450)
T ss_pred ----------cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC-CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecC
Confidence 34699999999997753 567888877543333 334443333333334478899999964 5799999
Q ss_pred CCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccC------CCcCCcCCCc
Q 003175 644 YNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSN------KNSASVGKSL 716 (842)
Q Consensus 644 ~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~------~~~~~~~~~~ 716 (842)
|+.+++.+||+.++...+ .+++++++++++.+ .||+|.++.++.+....+.......... ..........
T Consensus 280 pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~---~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~~~~~~~~ 356 (450)
T PRK00149 280 PDLETRIAILKKKAEEEGIDLPDEVLEFIAKNI---TSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKK 356 (450)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCc---CCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCCC
Confidence 999999999999998655 68999999988774 8999998888888776665432111000 0011122346
Q ss_pred ccHHHHHHHHHHHhhChHHHHHhhCchHHHHHH---HHHHHHHHHcCCcceeHHHHH
Q 003175 717 VGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFL---TAMVYELYKTGMGETNFEKLA 770 (842)
Q Consensus 717 It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL---~a~~~~~~~~g~~~~~~~~v~ 770 (842)
|+.++|.+++.+.++-...+ |.+-+....+.. +||+.....++.+...+|..|
T Consensus 357 ~~~~~i~~~v~~~~~i~~~~-l~~~~R~~~~~~aR~iamyl~~~~~~~s~~~Ig~~f 412 (450)
T PRK00149 357 ITIENIQKVVAEYYNIKVSD-LKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAF 412 (450)
T ss_pred CCHHHHHHHHHHHcCCCHHH-HhCCCCCcccChHHHHHHHHHHHhcCCCHHHHHHHc
Confidence 89999999999888754444 444444332222 566665556777666666666
No 71
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=2.3e-16 Score=184.07 Aligned_cols=198 Identities=19% Similarity=0.212 Sum_probs=144.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC--------------CCCceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS--------------IRPYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~--------------~~~~~~ 525 (842)
+.++|.+...+.|...+.. +. .++.+||+||+|+|||++++.+++.+.+...... .....+
T Consensus 16 ~~iiGq~~v~~~L~~~i~~----~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDT----GR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred HHccCcHHHHHHHHHHHHc----CC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 5588998887777766653 32 4677899999999999999999999986421100 012335
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+++++.....- .+..+.+. .+.. ........|+||||+|.|....++.|+..++.+
T Consensus 91 ~eid~~s~~~v------------------~~ir~l~~-~~~~----~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep- 146 (576)
T PRK14965 91 FEIDGASNTGV------------------DDIRELRE-NVKY----LPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP- 146 (576)
T ss_pred eeeeccCccCH------------------HHHHHHHH-HHHh----ccccCCceEEEEEChhhCCHHHHHHHHHHHHcC-
Confidence 66665432222 12211111 1111 112246689999999999988899999999854
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
...++||++|+. +..+.+.|+||+. .+.|.+++.+++...|...++..+ .+++++++++++.. .||+|.
T Consensus 147 --p~~~~fIl~t~~---~~kl~~tI~SRc~--~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a---~G~lr~ 216 (576)
T PRK14965 147 --PPHVKFIFATTE---PHKVPITILSRCQ--RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKG---DGSMRD 216 (576)
T ss_pred --CCCeEEEEEeCC---hhhhhHHHHHhhh--hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc---CCCHHH
Confidence 557888888876 4788899999995 599999999999999999887665 68899999887764 799999
Q ss_pred HHHHHHHHHHHH
Q 003175 685 ALEICRRAAEIA 696 (842)
Q Consensus 685 al~ll~~A~~~A 696 (842)
+++++.+++.+.
T Consensus 217 al~~Ldqliay~ 228 (576)
T PRK14965 217 SLSTLDQVLAFC 228 (576)
T ss_pred HHHHHHHHHHhc
Confidence 999998877653
No 72
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.3e-16 Score=185.30 Aligned_cols=237 Identities=24% Similarity=0.273 Sum_probs=171.6
Q ss_pred cCcccccCcccHHHHHHHhccccCC-CCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 434 IPEHVRCHKQTELERAKATLLLATL-PKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 434 ~p~~~~~~~~~~~~~~~~~L~~~~~-p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
..+.+.|.++.++..+++.+..... |...+ ..+.. .+.....++||+||||||||+|++++++++.
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~----------e~~~~---~~~~~~~giLl~GpPGtGKT~lAkava~~~~ 301 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRP----------ELFRK---LGLRPPKGVLLYGPPGTGKTLLAKAVALESR 301 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhCh----------HHHHh---cCCCCCCeeEEECCCCCCHHHHHHHHHhhCC
Confidence 3456778888888888877764331 11111 11111 1112367899999999999999999999776
Q ss_pred HHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC
Q 003175 513 SEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR 592 (842)
Q Consensus 513 ~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~ 592 (842)
.+|+.+.+..+.+. ...+..+.+.+.|..+.. ..|+||||||+|.+...
T Consensus 302 ----------~~fi~v~~~~l~sk----------------~vGesek~ir~~F~~A~~-----~~p~iiFiDEiDs~~~~ 350 (494)
T COG0464 302 ----------SRFISVKGSELLSK----------------WVGESEKNIRELFEKARK-----LAPSIIFIDEIDSLASG 350 (494)
T ss_pred ----------CeEEEeeCHHHhcc----------------ccchHHHHHHHHHHHHHc-----CCCcEEEEEchhhhhcc
Confidence 66999987765442 122455677778877653 47899999999999976
Q ss_pred Ch--------HHHHHhhcCC--CCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCc
Q 003175 593 NQ--------SVLYNILDWP--TKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGI 660 (842)
Q Consensus 593 ~~--------~~L~~ll~~~--~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~ 660 (842)
+. .++.+++.+. ......|.||++||. ++.+++.+.+ ||. ..|.|++++.+++.+|++.++...
T Consensus 351 r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~---p~~ld~a~lR~gRfd-~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 351 RGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNR---PDDLDPALLRPGRFD-RLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred CCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCC---ccccCHhhcccCccc-eEeecCCCCHHHHHHHHHHHhccc
Confidence 42 3455554433 245667999999998 5677888888 998 799999999999999999999854
Q ss_pred cc--CcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhC
Q 003175 661 EA--FEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 661 ~~--~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
.. ..+..++.+++...+++|.- +..+|+.|...+..+.. ...|+.+||..|+.++..+
T Consensus 427 ~~~~~~~~~~~~l~~~t~~~sgad--i~~i~~ea~~~~~~~~~------------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 427 KPPLAEDVDLEELAEITEGYSGAD--IAALVREAALEALREAR------------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred CCcchhhhhHHHHHHHhcCCCHHH--HHHHHHHHHHHHHHHhc------------cCCccHHHHHHHHHhcCCC
Confidence 43 45667788888777777733 23589999999987631 3579999999999885543
No 73
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=4.1e-16 Score=178.07 Aligned_cols=212 Identities=19% Similarity=0.204 Sum_probs=148.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCC--------------CCceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSI--------------RPYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~--------------~~~~~ 525 (842)
..++|++..++.|...+.. +. .++++||+||+|+|||++|+.+++.+.+..+.... ....+
T Consensus 16 ~dIIGQe~iv~~L~~aI~~----~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Di 90 (605)
T PRK05896 16 KQIIGQELIKKILVNAILN----NK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDI 90 (605)
T ss_pred HHhcCcHHHHHHHHHHHHc----CC-CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCce
Confidence 4578999988777766543 32 36789999999999999999999999764321100 01234
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+++++..... .++....+ +.+... + ......|+||||+|.|....++.|+..++.+
T Consensus 91 ieIdaas~ig------------------Vd~IReIi-~~~~~~-P---~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP- 146 (605)
T PRK05896 91 VELDAASNNG------------------VDEIRNII-DNINYL-P---TTFKYKVYIIDEAHMLSTSAWNALLKTLEEP- 146 (605)
T ss_pred EEeccccccC------------------HHHHHHHH-HHHHhc-h---hhCCcEEEEEechHhCCHHHHHHHHHHHHhC-
Confidence 5555432211 11222211 111111 1 1124578999999999877788999998853
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
...+++|++++. +..+.+.++||+. .+.|.+++.+++..+|...+...+ .+++++++.+++. ..||+|.
T Consensus 147 --p~~tvfIL~Tt~---~~KLl~TI~SRcq--~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~l---S~GdlR~ 216 (605)
T PRK05896 147 --PKHVVFIFATTE---FQKIPLTIISRCQ--RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADL---ADGSLRD 216 (605)
T ss_pred --CCcEEEEEECCC---hHhhhHHHHhhhh--hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCcHHH
Confidence 456777777765 5788899999995 599999999999999999987655 5888898887766 4799999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHH
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQ 727 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~ 727 (842)
|++++..+..... ..|+.++|.+++.
T Consensus 217 AlnlLekL~~y~~-----------------~~It~e~V~ellg 242 (605)
T PRK05896 217 GLSILDQLSTFKN-----------------SEIDIEDINKTFG 242 (605)
T ss_pred HHHHHHHHHhhcC-----------------CCCCHHHHHHHhc
Confidence 9999998655421 2377777776543
No 74
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.7e-17 Score=177.10 Aligned_cols=248 Identities=22% Similarity=0.263 Sum_probs=178.2
Q ss_pred CcccccCcccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 435 PEHVRCHKQTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 435 p~~~~~~~~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
...|.|+++.++..+++.|....+-.-+ |- ....+-+.+.+++|+.||||+|||+|+++||.+..
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~l--r~-----------d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~-- 211 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLL--RP-----------DLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESG-- 211 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhccc--ch-----------HhhhccccccchhheecCCCCchHHHHHHHHhhhc--
Confidence 3458899999999999999876652221 11 12222233578899999999999999999999987
Q ss_pred hhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh
Q 003175 515 VESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ 594 (842)
Q Consensus 515 ~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~ 594 (842)
..|+.|.+..+++. ..| +..+.+..+|.-++. .+|.|+||||+|.+...+.
T Consensus 212 --------atff~iSassLtsK----------~~G------e~eK~vralf~vAr~-----~qPsvifidEidslls~Rs 262 (428)
T KOG0740|consen 212 --------ATFFNISASSLTSK----------YVG------ESEKLVRALFKVARS-----LQPSVIFIDEIDSLLSKRS 262 (428)
T ss_pred --------ceEeeccHHHhhhh----------ccC------hHHHHHHHHHHHHHh-----cCCeEEEechhHHHHhhcC
Confidence 56888888776653 112 224566666655543 4899999999999987541
Q ss_pred ------------HHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc-c
Q 003175 595 ------------SVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI-E 661 (842)
Q Consensus 595 ------------~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~-~ 661 (842)
+.|.++.-.......+|+|||+||. +..++..++.||. .++++|.++.+.+..|+.+.+... .
T Consensus 263 ~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~---P~e~Dea~~Rrf~-kr~yiplPd~etr~~~~~~ll~~~~~ 338 (428)
T KOG0740|consen 263 DNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR---PWELDEAARRRFV-KRLYIPLPDYETRSLLWKQLLKEQPN 338 (428)
T ss_pred CcccccchhhhhHHHhhhccccCCCCCeEEEEecCCC---chHHHHHHHHHhh-ceeeecCCCHHHHHHHHHHHHHhCCC
Confidence 3344444444556779999999998 6888999999998 688899999999999999999866 4
Q ss_pred cCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhCh
Q 003175 662 AFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAP 733 (842)
Q Consensus 662 ~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~ 733 (842)
.+.+..++.+++...+++| |+. ++|+.|+..=.+.......-..........|+..||..|+..+....
T Consensus 339 ~l~~~d~~~l~~~Tegysgsdi~---~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 339 GLSDLDISLLAKVTEGYSGSDIT---ALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred CccHHHHHHHHHHhcCcccccHH---HHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhcccc
Confidence 7788889999999988877 554 48888876543332211000111223456788999999988776543
No 75
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.71 E-value=4.2e-18 Score=158.20 Aligned_cols=90 Identities=20% Similarity=0.401 Sum_probs=82.7
Q ss_pred hhhhhhhhceeeccCCceEEEEEeecCCcccccCCCCC-cccccccccCCccccccchhccceeeeCcccccccccCC--
Q 003175 266 DLWAANIQSMWKEVDGNYWCRVFWYMIPEETAAGRQPH-NLRRELYRTNDFANIEMESIIRHCSVMSPKDFVKANDQG-- 342 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~g~~~~~~~w~~~peEt~~~~~~~-~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~~~~~~-- 342 (842)
..|+|+|++||++.+|.+|+.|+||++|+||.+++++. +++||||+|+++|+|++++|+|||.||++++|.+.....
T Consensus 22 ~~~va~Ie~i~ed~~g~~~v~v~WF~~p~E~~~~~~~~~~~~~EvFlS~~~d~i~~~~I~gk~~Vls~~~y~k~~~~~~~ 101 (130)
T cd04721 22 DRYVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVECIDGLATVLTREHYEKFQSVPKN 101 (130)
T ss_pred CcEEEEEEEEEEcCCCCEEEEEEEecCHHHhccccCCCCCCCCeEEEcCCccccchHHeeeeeEECCHHHHhhhhccccC
Confidence 45899999999999999999999999999999987777 899999999999999999999999999999999887553
Q ss_pred ---CCEEEEeeEEecC
Q 003175 343 ---DDIFLCEYEYDIH 355 (842)
Q Consensus 343 ---~~~~~C~~~y~~~ 355 (842)
.++|+|++.||..
T Consensus 102 ~~~~~~f~C~~~~d~~ 117 (130)
T cd04721 102 SSELQAYFCYRQIDNN 117 (130)
T ss_pred ccccccEEEEEEecCC
Confidence 5699999999764
No 76
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.71 E-value=1.8e-16 Score=179.53 Aligned_cols=254 Identities=15% Similarity=0.209 Sum_probs=171.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
.+.++|||++|+|||+|++++++++.... +...++|+++.. +...+...+... ......+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-----~~~~v~yv~~~~------f~~~~~~~l~~~----~~~~~~~~~~~- 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNF-----SDLKVSYMSGDE------FARKAVDILQKT----HKEIEQFKNEI- 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHH------HHHHHHHHHHHh----hhHHHHHHHHh-
Confidence 46799999999999999999999887532 236688888654 334444433210 01112222222
Q ss_pred cccCCCCCCCCcEEEEEecCcccccC--ChHHHHHhhcCCCCCCCcEEEEEEeCC-CCCccccchhhhccCCc-eeEEec
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTR--NQSVLYNILDWPTKPNSKLIVIGIANT-MDLPEKLLPRISSRMGV-QRLCFG 642 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~--~~~~L~~ll~~~~~~~~~vivI~~tn~-~dl~~~l~~~l~sR~~~-~~i~f~ 642 (842)
....+|||||++.+..+ .++.|+.+|+.....+.++ || +++. +.....+++++.|||.. ..+.+.
T Consensus 205 ---------~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~i-Il-tsd~~P~~l~~l~~rL~SR~~~Gl~~~L~ 273 (450)
T PRK14087 205 ---------CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQL-FF-SSDKSPELLNGFDNRLITRFNMGLSIAIQ 273 (450)
T ss_pred ---------ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcE-EE-ECCCCHHHHhhccHHHHHHHhCCceeccC
Confidence 14469999999999754 3688999988665444433 33 4554 34445678999999964 578899
Q ss_pred CCCHHHHHHHHHHHhcCcc---cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH--hhhccC------CCcCC
Q 003175 643 PYNHQQLQEIISSRLKGIE---AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRI--KKQTSN------KNSAS 711 (842)
Q Consensus 643 p~~~~e~~~Il~~~l~~~~---~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~--~~~~~~------~~~~~ 711 (842)
+|+.+++.+||+.+++..+ .++++++++|+..+ .||+|.++.+|.++...+.... ...... .+...
T Consensus 274 ~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~---~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~~ 350 (450)
T PRK14087 274 KLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYY---SDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIPT 350 (450)
T ss_pred CcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhccc
Confidence 9999999999999997644 58999999988764 8999999999998876554431 110000 01111
Q ss_pred cCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHH---HHHHHHHHHcCCcceeHHHHHH
Q 003175 712 VGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFL---TAMVYELYKTGMGETNFEKLAM 771 (842)
Q Consensus 712 ~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL---~a~~~~~~~~g~~~~~~~~v~~ 771 (842)
.....||.+.|.+++.+.++-.. .-|.+-+....+++ +||+.....++.+...+|+.|.
T Consensus 351 ~~~~~~t~~~I~~~Va~~~~i~~-~dl~s~~R~~~i~~~RqiamyL~r~~t~~sl~~IG~~Fg 412 (450)
T PRK14087 351 SKLGILNVKKIKEVVSEKYGISV-NAIDGKARSKSIVTARHIAMYLTKEILNHTLAQIGEEFG 412 (450)
T ss_pred cccCCCCHHHHHHHHHHHcCCCH-HHHhCCCCCccccHHHHHHHHHHHHHcCCCHHHHHHHhC
Confidence 12335899999999999987544 44556565544444 6788776677777666776663
No 77
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.71 E-value=3.9e-16 Score=176.54 Aligned_cols=269 Identities=18% Similarity=0.222 Sum_probs=151.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcC-------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 460 KFLPCRNKEMEDITAFIKGATCD-------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~-------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
+.+.|.+.++++|...+...+.. +..+++++|||||||||||++++++++++.............|+.+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 44667777777777776532221 22346889999999999999999999998743211001112344444332
Q ss_pred CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh------------HHHHHh
Q 003175 533 LASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ------------SVLYNI 600 (842)
Q Consensus 533 ~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~------------~~L~~l 600 (842)
+.+. +.| +....+..+|..+.... ..+.++||||||+|.+...+. +.|++.
T Consensus 262 Ll~k----------yvG------ete~~ir~iF~~Ar~~a-~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 262 LLNK----------YVG------ETERQIRLIFQRAREKA-SDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred hccc----------ccc------hHHHHHHHHHHHHHHHh-hcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 2211 111 12223344444332211 234689999999999975421 234444
Q ss_pred hcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHH
Q 003175 601 LDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAI 678 (842)
Q Consensus 601 l~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~ 678 (842)
++... ...+++||++||. ++.|++++.+ ||. ..|.|++|+.+++.+|++.++...-.+++++ +. ..+.
T Consensus 325 LDgl~-~~~~ViVI~ATN~---~d~LDpALlRpGRfD-~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l----~~-~~g~ 394 (512)
T TIGR03689 325 LDGVE-SLDNVIVIGASNR---EDMIDPAILRPGRLD-VKIRIERPDAEAAADIFSKYLTDSLPLDADL----AE-FDGD 394 (512)
T ss_pred hcccc-cCCceEEEeccCC---hhhCCHhhcCccccc-eEEEeCCCCHHHHHHHHHHHhhccCCchHHH----HH-hcCC
Confidence 44332 2467999999998 4778999987 998 6899999999999999999987432223222 21 1222
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHh--hhcc----CCCc-CCcCCCcccHHHHHHHHHHHhhChHHHHHhhC--chHHHHHH
Q 003175 679 SGDARRALEICRRAAEIADYRIK--KQTS----NKNS-ASVGKSLVGMADVEAAIQEMFQAPHIQVMKSC--SKLSKIFL 749 (842)
Q Consensus 679 ~Gd~R~al~ll~~A~~~A~~~~~--~~~~----~~~~-~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~l--s~~~kliL 749 (842)
.| ..+-.+|++++........ .... +... .-.-...++-..|..++..+....+.+.+... ......++
T Consensus 395 ~~--a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~ 472 (512)
T TIGR03689 395 RE--ATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLL 472 (512)
T ss_pred CH--HHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHH
Confidence 22 2223466666544332110 0000 0000 00013456667777777766655555554322 22233456
Q ss_pred HHHHHHHH
Q 003175 750 TAMVYELY 757 (842)
Q Consensus 750 ~a~~~~~~ 757 (842)
.|+..+..
T Consensus 473 ~a~~~e~~ 480 (512)
T TIGR03689 473 AAVLDEFR 480 (512)
T ss_pred HHHHHhhc
Confidence 66666554
No 78
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=1.7e-15 Score=172.33 Aligned_cols=198 Identities=21% Similarity=0.254 Sum_probs=142.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC--------------CCCceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS--------------IRPYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~--------------~~~~~~ 525 (842)
+.++|.+...+.|..++.. +. .++.+||+||+|+|||++++.+++.+.+...... .....+
T Consensus 14 deiiGqe~v~~~L~~~I~~----gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDN----NR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHc----CC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 4588988887777777653 33 4678899999999999999999999875322110 012335
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+++++...... .+..+.+...- .....+...|+||||+|.|....++.|+..++.+
T Consensus 89 ~eldaas~~gI------------------d~IRelie~~~-----~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp- 144 (535)
T PRK08451 89 IEMDAASNRGI------------------DDIRELIEQTK-----YKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP- 144 (535)
T ss_pred EEeccccccCH------------------HHHHHHHHHHh-----hCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc-
Confidence 55554322211 22222222110 0011235689999999999988889999999864
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
...+.||.+++. +..+.+.++||+ ..+.|.+++.+++.+.|..++...+ .+++++++++++. ..||+|.
T Consensus 145 --p~~t~FIL~ttd---~~kL~~tI~SRc--~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~---s~GdlR~ 214 (535)
T PRK08451 145 --PSYVKFILATTD---PLKLPATILSRT--QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARS---GNGSLRD 214 (535)
T ss_pred --CCceEEEEEECC---hhhCchHHHhhc--eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCcHHH
Confidence 445667777765 477889999998 4699999999999999999988665 6788999887776 4799999
Q ss_pred HHHHHHHHHHHH
Q 003175 685 ALEICRRAAEIA 696 (842)
Q Consensus 685 al~ll~~A~~~A 696 (842)
++++|.+++..+
T Consensus 215 alnlLdqai~~~ 226 (535)
T PRK08451 215 TLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHhc
Confidence 999999888654
No 79
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.70 E-value=1.2e-15 Score=169.92 Aligned_cols=214 Identities=19% Similarity=0.261 Sum_probs=150.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcC--------------CCCCceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESG--------------SIRPYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~--------------~~~~~~~ 525 (842)
+.++|++..++.|...+.. +. .++.+||+||||+|||++++.+++.+.+..... ....+.+
T Consensus 14 ~~iig~~~~~~~l~~~~~~----~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKN----GR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHc----CC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 4578999999988877754 32 367889999999999999999999987542110 0112346
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+++++....+..++. ..+.. .... ...+...||||||+|.+....++.|+..++.+
T Consensus 89 ~~~~~~~~~~~~~~~------------------~l~~~-~~~~----p~~~~~~vviidea~~l~~~~~~~Ll~~le~~- 144 (355)
T TIGR02397 89 IEIDAASNNGVDDIR------------------EILDN-VKYA----PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP- 144 (355)
T ss_pred EEeeccccCCHHHHH------------------HHHHH-HhcC----cccCCceEEEEeChhhcCHHHHHHHHHHHhCC-
Confidence 666665322221111 11111 1100 11235579999999999876677788887653
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
...++||.+++. +..+.+.+.+|+. .+.|++++.+++.+++..+++..+ .++++++++++.. ..||+|.
T Consensus 145 --~~~~~lIl~~~~---~~~l~~~l~sr~~--~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~---~~g~~~~ 214 (355)
T TIGR02397 145 --PEHVVFILATTE---PHKIPATILSRCQ--RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARA---ADGSLRD 214 (355)
T ss_pred --ccceeEEEEeCC---HHHHHHHHHhhee--EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCChHH
Confidence 446777777766 3577889999994 699999999999999999998665 6888888887765 4789999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHH
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEM 729 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~ 729 (842)
+++.+..+...+ ...|+.++|.+++...
T Consensus 215 a~~~lekl~~~~-----------------~~~it~~~v~~~~~~~ 242 (355)
T TIGR02397 215 ALSLLDQLISFG-----------------NGNITYEDVNELLGLV 242 (355)
T ss_pred HHHHHHHHHhhc-----------------CCCCCHHHHHHHhCCC
Confidence 999888877642 1348888888776533
No 80
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1.9e-15 Score=172.73 Aligned_cols=212 Identities=20% Similarity=0.248 Sum_probs=146.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcC-------------CCCCceEE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESG-------------SIRPYCFV 526 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~-------------~~~~~~~v 526 (842)
+.++|.+..++.|..++.. +. .++.+||+||||||||++++.+++.+.+..... ......++
T Consensus 14 ~dvvGq~~v~~~L~~~i~~----~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQ----GR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHc----CC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 4578888887777777664 32 467789999999999999999999997642110 00112355
Q ss_pred EEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC
Q 003175 527 EVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK 606 (842)
Q Consensus 527 ~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~ 606 (842)
++|+...... ....+ +.+.+... + ..+.+.||||||+|.+....++.|+..++.
T Consensus 89 el~~~~~~~v------------------d~iR~-l~~~~~~~-p---~~~~~kVVIIDEad~ls~~a~naLLk~LEe--- 142 (504)
T PRK14963 89 EIDAASNNSV------------------EDVRD-LREKVLLA-P---LRGGRKVYILDEAHMMSKSAFNALLKTLEE--- 142 (504)
T ss_pred EecccccCCH------------------HHHHH-HHHHHhhc-c---ccCCCeEEEEECccccCHHHHHHHHHHHHh---
Confidence 6665422211 11111 21111111 1 123567999999999976667777777764
Q ss_pred CCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHH
Q 003175 607 PNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRA 685 (842)
Q Consensus 607 ~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~a 685 (842)
+...++||.+++. +..+.+.+.||+. .+.|.+++.+++.++|..++...+ .+++++++++++.. .||+|++
T Consensus 143 p~~~t~~Il~t~~---~~kl~~~I~SRc~--~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s---~GdlR~a 214 (504)
T PRK14963 143 PPEHVIFILATTE---PEKMPPTILSRTQ--HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLA---DGAMRDA 214 (504)
T ss_pred CCCCEEEEEEcCC---hhhCChHHhcceE--EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---CCCHHHH
Confidence 3456777777775 4678889999995 699999999999999999987655 57889999877664 8999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHH
Q 003175 686 LEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQE 728 (842)
Q Consensus 686 l~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~ 728 (842)
+++|.++... ...||.++|.+++..
T Consensus 215 ln~Lekl~~~------------------~~~It~~~V~~~l~~ 239 (504)
T PRK14963 215 ESLLERLLAL------------------GTPVTRKQVEEALGL 239 (504)
T ss_pred HHHHHHHHhc------------------CCCCCHHHHHHHHCC
Confidence 9999987542 124777777666543
No 81
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1.3e-15 Score=177.09 Aligned_cols=218 Identities=17% Similarity=0.216 Sum_probs=150.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcC---------------------
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESG--------------------- 518 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~--------------------- 518 (842)
+.++|.+..+..|...+. .+. .++++||+||+|+|||++|+.+++.+.+....+
T Consensus 16 ~eivGQe~i~~~L~~~i~----~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLR----MDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHH----cCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 558898887777666554 333 478899999999999999999999998742110
Q ss_pred -CCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHH
Q 003175 519 -SIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVL 597 (842)
Q Consensus 519 -~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L 597 (842)
....+.++++++...... ++....+.. +... ...+...||||||+|.|....++.|
T Consensus 91 ~~g~~~n~~~~d~~s~~~v------------------d~Ir~l~e~-~~~~----P~~~~~KVvIIdEad~Lt~~a~naL 147 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSV------------------DDIRQLREN-VRYG----PQKGRYRVYIIDEVHMLSTAAFNAF 147 (620)
T ss_pred hccCCCCeEEecccccCCH------------------HHHHHHHHH-HHhh----hhcCCCEEEEEeChhhcCHHHHHHH
Confidence 001123444444322222 222222211 1100 0113457999999999988778889
Q ss_pred HHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHH
Q 003175 598 YNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVA 676 (842)
Q Consensus 598 ~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~ 676 (842)
+..++.+ ....+||++++. ...+.+.|+||+. .+.|.+++.+++...|...+...+ .++++++++++..+
T Consensus 148 LK~LEeP---p~~tv~IL~t~~---~~kLl~TI~SRc~--~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s- 218 (620)
T PRK14954 148 LKTLEEP---PPHAIFIFATTE---LHKIPATIASRCQ--RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKA- 218 (620)
T ss_pred HHHHhCC---CCCeEEEEEeCC---hhhhhHHHHhhce--EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-
Confidence 9998854 445777777765 3788889999994 599999999999999999887655 58999999987764
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHH
Q 003175 677 AISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQE 728 (842)
Q Consensus 677 ~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~ 728 (842)
.||+|.+++.+.+...++... .....|+.++|.+.+..
T Consensus 219 --~Gdlr~al~eLeKL~~y~~~~------------~~~~~It~~~V~~lv~~ 256 (620)
T PRK14954 219 --QGSMRDAQSILDQVIAFSVGS------------EAEKVIAYQGVAELLNY 256 (620)
T ss_pred --CCCHHHHHHHHHHHHHhcccc------------ccCCccCHHHHHHHHcC
Confidence 799999999999887765210 01346777777776543
No 82
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.3e-15 Score=172.63 Aligned_cols=214 Identities=15% Similarity=0.175 Sum_probs=149.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC---------------CCCce
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS---------------IRPYC 524 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~---------------~~~~~ 524 (842)
+.++|.+..+..|...+.. +. .++++||+||+|+|||++++.+++.+.+...... ...+.
T Consensus 17 ~diiGq~~~v~~L~~~i~~----~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRF----NR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHc----CC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 5688999888877766653 32 4678999999999999999999999975421111 01133
Q ss_pred EEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCC
Q 003175 525 FVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWP 604 (842)
Q Consensus 525 ~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~ 604 (842)
++++++.....- .+... +.+.+... .......||||||+|.|....++.|+..++.+
T Consensus 92 ~~~i~g~~~~gi------------------d~ir~-i~~~l~~~----~~~~~~kvvIIdead~lt~~~~n~LLk~lEep 148 (451)
T PRK06305 92 VLEIDGASHRGI------------------EDIRQ-INETVLFT----PSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP 148 (451)
T ss_pred eEEeeccccCCH------------------HHHHH-HHHHHHhh----hhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC
Confidence 555554332221 11111 11111100 11135689999999999877778888888753
Q ss_pred CCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHH
Q 003175 605 TKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDAR 683 (842)
Q Consensus 605 ~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R 683 (842)
...++||++++. ...+.+.++||+. .+.|.+++.+++.++|...++..+ .+++++++++++.+ .||+|
T Consensus 149 ---~~~~~~Il~t~~---~~kl~~tI~sRc~--~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s---~gdlr 217 (451)
T PRK06305 149 ---PQHVKFFLATTE---IHKIPGTILSRCQ--KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAA---QGSLR 217 (451)
T ss_pred ---CCCceEEEEeCC---hHhcchHHHHhce--EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---CCCHH
Confidence 456777777765 3678899999995 599999999999999999887655 58899998877664 79999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHH
Q 003175 684 RALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEM 729 (842)
Q Consensus 684 ~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~ 729 (842)
.|++.+....... ...|+.++|.+++...
T Consensus 218 ~a~~~Lekl~~~~-----------------~~~It~~~V~~l~~~~ 246 (451)
T PRK06305 218 DAESLYDYVVGLF-----------------PKSLDPDSVAKALGLL 246 (451)
T ss_pred HHHHHHHHHHHhc-----------------cCCcCHHHHHHHHCCC
Confidence 9999988765431 1237888777766543
No 83
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.3e-15 Score=173.58 Aligned_cols=212 Identities=18% Similarity=0.213 Sum_probs=144.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCC--------------CceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIR--------------PYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~--------------~~~~ 525 (842)
..++|.+.-+..|...+.. +. .++.+||+||+|+|||++++.+++.+.+.......+ ...+
T Consensus 16 ~diiGq~~i~~~L~~~i~~----~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKL----QR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHc----CC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 3477888777666555543 33 467788999999999999999999997532111000 0123
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+++++.... +..+.. .+.+.+... ...+.+.|+||||+|.|....++.|+..++.+
T Consensus 91 ~eidaas~~------------------gvd~ir-~I~~~~~~~----P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep- 146 (486)
T PRK14953 91 IEIDAASNR------------------GIDDIR-ALRDAVSYT----PIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP- 146 (486)
T ss_pred EEEeCccCC------------------CHHHHH-HHHHHHHhC----cccCCeeEEEEEChhhcCHHHHHHHHHHHhcC-
Confidence 344332211 111111 222222111 12246789999999999877778888888754
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
...++||.+++. .+.+.+.+.||+. .+.|.+++.+++..+|..+++..+ .++++++++++.. ..||+|.
T Consensus 147 --p~~~v~Il~tt~---~~kl~~tI~SRc~--~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~---s~G~lr~ 216 (486)
T PRK14953 147 --PPRTIFILCTTE---YDKIPPTILSRCQ--RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQA---SEGGMRD 216 (486)
T ss_pred --CCCeEEEEEECC---HHHHHHHHHHhce--EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHH
Confidence 445666666655 3567788999995 699999999999999999988665 6888999988765 4799999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHH
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQ 727 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~ 727 (842)
+++++..+...+ ...||.++|.+++.
T Consensus 217 al~~Ldkl~~~~-----------------~~~It~~~V~~~lg 242 (486)
T PRK14953 217 AASLLDQASTYG-----------------EGKVTIKVVEEFLG 242 (486)
T ss_pred HHHHHHHHHHhc-----------------CCCcCHHHHHHHhC
Confidence 999999887542 23577777777654
No 84
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.5e-15 Score=175.63 Aligned_cols=212 Identities=17% Similarity=0.260 Sum_probs=149.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC--------------CCCceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS--------------IRPYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~--------------~~~~~~ 525 (842)
..++|.+..++.|...+.. +. .++.+||+||+|+|||++++.+++.+.+...... ...+.+
T Consensus 16 ~diiGqe~iv~~L~~~i~~----~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv 90 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIES----NK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV 90 (563)
T ss_pred HHccCcHHHHHHHHHHHHc----CC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe
Confidence 4588998888887777754 32 4678999999999999999999999986421110 112345
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+.+++...... .+..+........ ...+...|+||||+|.|....++.|+..++.
T Consensus 91 ~~idgas~~~v------------------ddIr~l~e~~~~~-----p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe-- 145 (563)
T PRK06647 91 IEIDGASNTSV------------------QDVRQIKEEIMFP-----PASSRYRVYIIDEVHMLSNSAFNALLKTIEE-- 145 (563)
T ss_pred EEecCcccCCH------------------HHHHHHHHHHHhc-----hhcCCCEEEEEEChhhcCHHHHHHHHHhhcc--
Confidence 55554332221 2222222111111 1124668999999999987777888888774
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
+...++||++++. +..+.+.|+||+. .+.|.+++.+++.++|...+...+ .+++++++++++. ..||+|.
T Consensus 146 -pp~~~vfI~~tte---~~kL~~tI~SRc~--~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~---s~GdlR~ 216 (563)
T PRK06647 146 -PPPYIVFIFATTE---VHKLPATIKSRCQ--HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYK---STGSVRD 216 (563)
T ss_pred -CCCCEEEEEecCC---hHHhHHHHHHhce--EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHH
Confidence 4567888888765 3678889999995 599999999999999999887655 6889999998876 4799999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHH
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQ 727 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~ 727 (842)
|++++.+++.++ ...|+.++|.+++.
T Consensus 217 alslLdklis~~-----------------~~~It~e~V~~llg 242 (563)
T PRK06647 217 AYTLFDQVVSFS-----------------DSDITLEQIRSKMG 242 (563)
T ss_pred HHHHHHHHHhhc-----------------CCCCCHHHHHHHhC
Confidence 999998876542 13477777766543
No 85
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.69 E-value=2.2e-16 Score=189.08 Aligned_cols=279 Identities=18% Similarity=0.196 Sum_probs=192.3
Q ss_pred ccceeecccCCccchhhccCchhhhhccccCCCCCccccccccccCCCCCCCCCCccccccCCcccccccccc---cccc
Q 003175 356 WHSFKRIADIDKEEEVEDADSDEDWKSSKAADSDTDEDMEFEDEDGKHLHTGPSPAHELAANSQRGRFFGLQK---IGRK 432 (842)
Q Consensus 356 ~~~fk~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 432 (842)
-+++|.|++..+++.++ .++.+.+..+.+....+++..+...++.+++.+.+..+++ +++.. -|..
T Consensus 231 req~~~i~~elg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e----------~~~~~~yl~~~~ 299 (784)
T PRK10787 231 NEQMKAIQKELGEMDDA-PDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAE----------ATVVRGYIDWMV 299 (784)
T ss_pred hhhhhhhcccccCCCcc-hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCch----------HHHHHHHHHHHH
Confidence 35677787666543322 1234566666566667788888888888888888777765 22221 1234
Q ss_pred ccCcccccCcccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 433 RIPEHVRCHKQTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 433 ~~p~~~~~~~~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.+||.....+..++.+|++.|..++ .|.++..++|.+++..........+..++|+||||+|||++++.++..++
T Consensus 300 ~~pw~~~~~~~~~~~~~~~~l~~~~-----~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~ 374 (784)
T PRK10787 300 QVPWNARSKVKKDLRQAQEILDTDH-----YGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG 374 (784)
T ss_pred hCCCCCCCcccccHHHHHHHhhhhc-----cCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899888888899999999998654 59999999999988754433323467899999999999999999999886
Q ss_pred HHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHH-HHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 513 SEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKK-ALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 513 ~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~-~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
..++.+++....+...+ .|++..+.. ....+...+.... ....||+|||+|.+..
T Consensus 375 ----------~~~~~i~~~~~~d~~~i--------~g~~~~~~g~~~G~~~~~l~~~~------~~~~villDEidk~~~ 430 (784)
T PRK10787 375 ----------RKYVRMALGGVRDEAEI--------RGHRRTYIGSMPGKLIQKMAKVG------VKNPLFLLDEIDKMSS 430 (784)
T ss_pred ----------CCEEEEEcCCCCCHHHh--------ccchhccCCCCCcHHHHHHHhcC------CCCCEEEEEChhhccc
Confidence 34777877666654322 232221110 0011222222221 1234889999999987
Q ss_pred CC----hHHHHHhhcCCC------------CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHH
Q 003175 592 RN----QSVLYNILDWPT------------KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISS 655 (842)
Q Consensus 592 ~~----~~~L~~ll~~~~------------~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~ 655 (842)
.. ++.|+.+++-.+ ..-++++||+|+|.. .+.+.+.+||. .|.|.+|+.++..+|++.
T Consensus 431 ~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~----~i~~aLl~R~~--ii~~~~~t~eek~~Ia~~ 504 (784)
T PRK10787 431 DMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM----NIPAPLLDRME--VIRLSGYTEDEKLNIAKR 504 (784)
T ss_pred ccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC----CCCHHHhccee--eeecCCCCHHHHHHHHHH
Confidence 64 488999987321 123789999999874 38899999995 599999999999999998
Q ss_pred HhcC-------c----ccCcHHHHHHHHHHHHHHhc
Q 003175 656 RLKG-------I----EAFEKQAIEFASRKVAAISG 680 (842)
Q Consensus 656 ~l~~-------~----~~~~~~~l~~ia~~~~~~~G 680 (842)
++.. . -.+++++++.+++.+....|
T Consensus 505 ~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~G 540 (784)
T PRK10787 505 HLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG 540 (784)
T ss_pred hhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccC
Confidence 8841 1 15788999988875443344
No 86
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.69 E-value=9e-16 Score=173.80 Aligned_cols=253 Identities=15% Similarity=0.170 Sum_probs=167.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
.+++||||++|+|||+|++++++++.... +...++|+++.. +...+...+... ....+.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-----~~~~v~yi~~~~------f~~~~~~~~~~~------~~~~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITSEK------FLNDLVDSMKEG------KLNEFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHH------HHHHHHHHHhcc------cHHHHHHHHH
Confidence 46799999999999999999999987542 225688988754 333333333211 1111222221
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCC--hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCc-eeEEecC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRN--QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGV-QRLCFGP 643 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~--~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~-~~i~f~p 643 (842)
..+.+|||||++.+.... |..|+.+|+.....+ +.+||++.+.+.....+.+++.|||.. ..+.|.+
T Consensus 193 ---------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~-k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~ 262 (440)
T PRK14088 193 ---------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSG-KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEP 262 (440)
T ss_pred ---------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcC-CeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCC
Confidence 135699999999987653 566777776543333 345544434444445677899999964 4688999
Q ss_pred CCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccC-------CC-cCCcCC
Q 003175 644 YNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSN-------KN-SASVGK 714 (842)
Q Consensus 644 ~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~-------~~-~~~~~~ 714 (842)
|+.+.+..||+.++...+ .++++++++|++.+ .||+|.+..++.+....+.......... .. ......
T Consensus 263 pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~---~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~~~~~~~~ 339 (440)
T PRK14088 263 PDEETRKKIARKMLEIEHGELPEEVLNFVAENV---DDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDFIKPNRVK 339 (440)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcc---ccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccccc
Confidence 999999999999987544 68899999988775 7899988888877765554332111000 00 011112
Q ss_pred CcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHH---HHHHHHHHcCCcceeHHHHH
Q 003175 715 SLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLT---AMVYELYKTGMGETNFEKLA 770 (842)
Q Consensus 715 ~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~---a~~~~~~~~g~~~~~~~~v~ 770 (842)
..|+.+.|.+++.+.++ ...+.|.+.+.+..+.+. ||+.....++.+...+|..|
T Consensus 340 ~~i~~~~I~~~V~~~~~-i~~~~l~s~~R~~~i~~aR~iamyl~r~~~~~s~~~Ig~~f 397 (440)
T PRK14088 340 AMDPIDELIEIVAKVTG-VSREEILSNSRNVKALLARRIGMYVAKNYLGSSLRTIAEKF 397 (440)
T ss_pred CCCCHHHHHHHHHHHcC-CcHHHHhCCCCCccccHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 35899999999999986 446667788887766664 77776666676554455444
No 87
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.69 E-value=1.3e-15 Score=174.11 Aligned_cols=251 Identities=15% Similarity=0.133 Sum_probs=167.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
.+.+||||++|+|||+|++++++++.... +...++|+++..+.+ .+...+.. .....+.+.|.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~-----~g~~V~Yitaeef~~------el~~al~~------~~~~~f~~~y~ 376 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLY-----PGTRVRYVSSEEFTN------EFINSIRD------GKGDSFRRRYR 376 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHHH------HHHHHHHh------ccHHHHHHHhh
Confidence 35699999999999999999999987431 125688998765432 22222211 11122333332
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCC--hHHHHHhhcCCCCCCCcEEEEEEeCC-CCCccccchhhhccCCc-eeEEec
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRN--QSVLYNILDWPTKPNSKLIVIGIANT-MDLPEKLLPRISSRMGV-QRLCFG 642 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~--~~~L~~ll~~~~~~~~~vivI~~tn~-~dl~~~l~~~l~sR~~~-~~i~f~ 642 (842)
...|||||||+.+..+. +..|+.+|+.....+..++| ++|. +.-...++++|.|||.. ..+.+.
T Consensus 377 ----------~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~III--TSd~~P~eL~~l~~rL~SRf~~GLvv~I~ 444 (617)
T PRK14086 377 ----------EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVL--SSDRPPKQLVTLEDRLRNRFEWGLITDVQ 444 (617)
T ss_pred ----------cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEE--ecCCChHhhhhccHHHHhhhhcCceEEcC
Confidence 34799999999998754 67888898865443444443 5554 23335678899999965 568899
Q ss_pred CCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhcc-------CCCcCCcCC
Q 003175 643 PYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTS-------NKNSASVGK 714 (842)
Q Consensus 643 p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~-------~~~~~~~~~ 714 (842)
+++.+.+.+||+.++...+ .++++++++|+..+ .+|+|.+..++.+....+......... .........
T Consensus 445 ~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~---~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~~~~~~~ 521 (617)
T PRK14086 445 PPELETRIAILRKKAVQEQLNAPPEVLEFIASRI---SRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPEDSA 521 (617)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccccC
Confidence 9999999999999988665 78899999988775 778888888877776555433211100 000011123
Q ss_pred CcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHH---HHHHHHHHHcCCcceeHHHHH
Q 003175 715 SLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFL---TAMVYELYKTGMGETNFEKLA 770 (842)
Q Consensus 715 ~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL---~a~~~~~~~~g~~~~~~~~v~ 770 (842)
..|+.+.|.+++.+.++-... .|.+-+....+++ +||+.....++.+...+|..|
T Consensus 522 ~~it~d~I~~~Va~~f~v~~~-dl~s~~R~~~i~~aRqiAMYL~r~lt~~Sl~~IG~~F 579 (617)
T PRK14086 522 PEITAAAIMAATADYFGLTVE-DLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQF 579 (617)
T ss_pred CcCCHHHHHHHHHHHhCCCHH-HHhCCCCCcccchHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 468999999999999975444 4445444433333 677776666777666666665
No 88
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.68 E-value=2.4e-15 Score=166.35 Aligned_cols=224 Identities=21% Similarity=0.258 Sum_probs=145.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.+.|++..++.|..++.. +. ..+++|+||||||||++++++++++....+ ...++++|+..+....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~----~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~-----~~~~~~i~~~~~~~~~-- 81 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS----PN--LPHLLVQGPPGSGKTAAVRALARELYGDPW-----ENNFTEFNVADFFDQG-- 81 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC----CC--CceEEEECCCCCCHHHHHHHHHHHhcCccc-----ccceEEechhhhhhcc--
Confidence 3477999988888777753 22 247999999999999999999999874321 1347888886543110
Q ss_pred HHHHHH------HHhC---CCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCc
Q 003175 540 YRVIYE------ALSG---HRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSK 610 (842)
Q Consensus 540 ~~~i~~------~l~g---~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~ 610 (842)
...+.+ .+.. .........+.+.+.+....+ ......+|||||+|.|....++.|..+++... ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~---~~ 155 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRP---LSADYKTILLDNAEALREDAQQALRRIMEQYS---RT 155 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCC---CCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc---CC
Confidence 000000 0000 000001111111112211111 11345699999999997766778888887542 22
Q ss_pred EEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHH
Q 003175 611 LIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEIC 689 (842)
Q Consensus 611 vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll 689 (842)
..||.+++. +..+.+.+.+|+. .+.|.|++.+++.++|...+...+ .+++++++.+++.. .||+|.+++.+
T Consensus 156 ~~~Il~~~~---~~~~~~~L~sr~~--~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~---~gdlr~l~~~l 227 (337)
T PRK12402 156 CRFIIATRQ---PSKLIPPIRSRCL--PLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA---GGDLRKAILTL 227 (337)
T ss_pred CeEEEEeCC---hhhCchhhcCCce--EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---CCCHHHHHHHH
Confidence 334445544 2456778899984 599999999999999999887655 68899999988764 89999998877
Q ss_pred HHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHH
Q 003175 690 RRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQE 728 (842)
Q Consensus 690 ~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~ 728 (842)
..++. +...||.++|.+++..
T Consensus 228 ~~~~~------------------~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 228 QTAAL------------------AAGEITMEAAYEALGD 248 (337)
T ss_pred HHHHH------------------cCCCCCHHHHHHHhCC
Confidence 76441 1246999999887764
No 89
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.68 E-value=1.7e-16 Score=192.13 Aligned_cols=282 Identities=21% Similarity=0.223 Sum_probs=185.3
Q ss_pred cceeecccCCccchhhccCchhhhhccccCCCCCccccccccccCCCCCCCCCCccccccCCccccccccccccccccCc
Q 003175 357 HSFKRIADIDKEEEVEDADSDEDWKSSKAADSDTDEDMEFEDEDGKHLHTGPSPAHELAANSQRGRFFGLQKIGRKRIPE 436 (842)
Q Consensus 357 ~~fk~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 436 (842)
+++|.|++..+++.++. ++.+++..+.+....+++..+...++.+++...+..+.+..... .+ + -+...+||
T Consensus 230 eqlk~i~~eLg~~~~~~-~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---~y--l--~~~~~ip~ 301 (775)
T TIGR00763 230 EQLKAIKKELGIEKDDK-DELEKLKEKLEELKLPEEVKKVIEKELTKLSLLEPSSSEFTVTR---NY--L--DWLTDLPW 301 (775)
T ss_pred HHHHHHHHhhCCCCCch-hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCchHHHHH---HH--H--HHHHCCCC
Confidence 46666776665433221 23456777666666777777777777777777776665422110 00 0 11235677
Q ss_pred ccccCcccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhh
Q 003175 437 HVRCHKQTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVE 516 (842)
Q Consensus 437 ~~~~~~~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~ 516 (842)
.........+..+++.|..+ +.|.++..++|..++......+...+..++|+||||||||++++++++.++
T Consensus 302 ~~~~~~~~~~~~~~~~l~~~-----~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~---- 372 (775)
T TIGR00763 302 GKYSKENLDLKRAKEILDED-----HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN---- 372 (775)
T ss_pred cccccchhhHHHHHHHhhhh-----cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc----
Confidence 65555567788889888754 569999999999988765443333356899999999999999999999987
Q ss_pred cCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHH-HHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh-
Q 003175 517 SGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWK-KALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ- 594 (842)
Q Consensus 517 ~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~-~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~- 594 (842)
..++.+++....+...+ .|+...+. .....+.+.|..+. ....||||||||.+....+
T Consensus 373 ------~~~~~i~~~~~~~~~~i--------~g~~~~~~g~~~g~i~~~l~~~~------~~~~villDEidk~~~~~~~ 432 (775)
T TIGR00763 373 ------RKFVRFSLGGVRDEAEI--------RGHRRTYVGAMPGRIIQGLKKAK------TKNPLFLLDEIDKIGSSFRG 432 (775)
T ss_pred ------CCeEEEeCCCcccHHHH--------cCCCCceeCCCCchHHHHHHHhC------cCCCEEEEechhhcCCccCC
Confidence 45888887665443222 23221111 00112223343321 1224889999999987543
Q ss_pred ---HHHHHhhcCCC------------CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhc-
Q 003175 595 ---SVLYNILDWPT------------KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLK- 658 (842)
Q Consensus 595 ---~~L~~ll~~~~------------~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~- 658 (842)
+.|+.+++... ...++++||+|+|. .+.+++.+.+||. .|.|++|+.+++.+|++..+.
T Consensus 433 ~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~---~~~i~~~L~~R~~--vi~~~~~~~~e~~~I~~~~l~~ 507 (775)
T TIGR00763 433 DPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANS---IDTIPRPLLDRME--VIELSGYTEEEKLEIAKKYLIP 507 (775)
T ss_pred CHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCC---chhCCHHHhCCee--EEecCCCCHHHHHHHHHHHHHH
Confidence 67888886311 11257899999998 4678899999995 699999999999999987651
Q ss_pred ------Cc---c-cCcHHHHHHHHHHHHHHhc
Q 003175 659 ------GI---E-AFEKQAIEFASRKVAAISG 680 (842)
Q Consensus 659 ------~~---~-~~~~~~l~~ia~~~~~~~G 680 (842)
++ . .++++++..+++......|
T Consensus 508 ~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g 539 (775)
T TIGR00763 508 KALEDHGLKPDELKITDEALLLLIKYYTREAG 539 (775)
T ss_pred HHHHHcCCCcceEEECHHHHHHHHHhcChhcC
Confidence 12 1 5888999888875544334
No 90
>CHL00181 cbbX CbbX; Provisional
Probab=99.68 E-value=8.4e-16 Score=164.18 Aligned_cols=220 Identities=21% Similarity=0.194 Sum_probs=141.1
Q ss_pred cHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhh----c---C-C-cccCCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 444 TELERAKATLLLATLPKFLPCRNKEMEDITAFIKGAT----C---D-D-QCLGRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 444 ~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i----~---~-~-~~~~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
.+++.+.+.|.. .+.|.++..++|.+++.-.. . + . ...+.+++|+||||||||++|+.+++.+...
T Consensus 12 ~~~~~~~~~l~~-----~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 12 TQIQEVLDILDE-----ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKL 86 (287)
T ss_pred cCHHHHHHHHHH-----hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 345666666652 46688777777766543211 0 1 1 1135679999999999999999999988643
Q ss_pred hhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC--
Q 003175 515 VESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR-- 592 (842)
Q Consensus 515 ~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~-- 592 (842)
+.+..-.++++++..+ ...+.|... ......|..+ ...||||||+|.|...
T Consensus 87 ---g~~~~~~~~~v~~~~l----------~~~~~g~~~------~~~~~~l~~a--------~ggVLfIDE~~~l~~~~~ 139 (287)
T CHL00181 87 ---GYIKKGHLLTVTRDDL----------VGQYIGHTA------PKTKEVLKKA--------MGGVLFIDEAYYLYKPDN 139 (287)
T ss_pred ---CCCCCCceEEecHHHH----------HHHHhccch------HHHHHHHHHc--------cCCEEEEEccchhccCCC
Confidence 2222234788874432 122223211 1223334332 2369999999998432
Q ss_pred ----C---hHHHHHhhcCCCCCCCcEEEEEEeCCC--CCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-c
Q 003175 593 ----N---QSVLYNILDWPTKPNSKLIVIGIANTM--DLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-A 662 (842)
Q Consensus 593 ----~---~~~L~~ll~~~~~~~~~vivI~~tn~~--dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~ 662 (842)
. ++.|+.+++ .....++||++++.. +....++|.+.+||. ..|.|++|+.+++.+|+...+.... .
T Consensus 140 ~~~~~~e~~~~L~~~me---~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~-~~i~F~~~t~~el~~I~~~~l~~~~~~ 215 (287)
T CHL00181 140 ERDYGSEAIEILLQVME---NQRDDLVVIFAGYKDRMDKFYESNPGLSSRIA-NHVDFPDYTPEELLQIAKIMLEEQQYQ 215 (287)
T ss_pred ccchHHHHHHHHHHHHh---cCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCC-ceEEcCCcCHHHHHHHHHHHHHHhcCC
Confidence 1 344555554 334568888877642 212234589999998 6899999999999999999998654 5
Q ss_pred CcHHHHHHHHHHHHH-----HhcCHHHHHHHHHHHHHHHHHH
Q 003175 663 FEKQAIEFASRKVAA-----ISGDARRALEICRRAAEIADYR 699 (842)
Q Consensus 663 ~~~~~l~~ia~~~~~-----~~Gd~R~al~ll~~A~~~A~~~ 699 (842)
+++++++.+...+.. ..||+|.+.+++.+|+..-..+
T Consensus 216 l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r 257 (287)
T CHL00181 216 LTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANR 257 (287)
T ss_pred CChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 677766665555432 3488999888888887665444
No 91
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.4e-15 Score=170.72 Aligned_cols=219 Identities=16% Similarity=0.211 Sum_probs=149.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC--------------------
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS-------------------- 519 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~-------------------- 519 (842)
+.++|.+..++.|..++. ++. .+++++|+||+|+|||++|+.+++.+.+......
T Consensus 16 ~eiiGq~~~~~~L~~~~~----~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLR----MGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHH----hCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 568898888776666554 343 4678999999999999999999999976421000
Q ss_pred --CCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHH
Q 003175 520 --IRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVL 597 (842)
Q Consensus 520 --~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L 597 (842)
...+.++.+++..... .++..+.+ +.+... ...+...||||||+|.|....++.|
T Consensus 91 ~~~~~~n~~~~~~~~~~~------------------id~Ir~l~-~~~~~~----p~~~~~kvvIIdea~~l~~~~~~~L 147 (397)
T PRK14955 91 DAGTSLNISEFDAASNNS------------------VDDIRLLR-ENVRYG----PQKGRYRVYIIDEVHMLSIAAFNAF 147 (397)
T ss_pred hcCCCCCeEeecccccCC------------------HHHHHHHH-HHHhhc----hhcCCeEEEEEeChhhCCHHHHHHH
Confidence 0012344444432221 12222211 111110 1113557999999999987778888
Q ss_pred HHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHH
Q 003175 598 YNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVA 676 (842)
Q Consensus 598 ~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~ 676 (842)
+..++.+ ....+||++++. ...+.+.+++|+. .+.|.+++.+++.+++...++..+ .++++++++++..+
T Consensus 148 Lk~LEep---~~~t~~Il~t~~---~~kl~~tl~sR~~--~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s- 218 (397)
T PRK14955 148 LKTLEEP---PPHAIFIFATTE---LHKIPATIASRCQ--RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKA- 218 (397)
T ss_pred HHHHhcC---CCCeEEEEEeCC---hHHhHHHHHHHHH--HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-
Confidence 8888743 445666666654 3678889999995 599999999999999999987655 69999999987764
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHH
Q 003175 677 AISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEM 729 (842)
Q Consensus 677 ~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~ 729 (842)
.||+|.+++.|..+..++... .+...|+.++|.+++...
T Consensus 219 --~g~lr~a~~~L~kl~~~~~~~------------~~~~~It~~~v~~~v~~~ 257 (397)
T PRK14955 219 --QGSMRDAQSILDQVIAFSVES------------EGEGSIRYDKVAELLNYI 257 (397)
T ss_pred --CCCHHHHHHHHHHHHHhcccc------------CCCCccCHHHHHHHHCCC
Confidence 799999999999887765311 013468888887766433
No 92
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.68 E-value=1.7e-15 Score=179.25 Aligned_cols=211 Identities=20% Similarity=0.256 Sum_probs=144.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++|++..+.. ...|...+..+. ..+++|+||||||||++++.+++.+. ..|+.+|+... ...++
T Consensus 28 dd~vGQe~ii~~-~~~L~~~i~~~~--~~slLL~GPpGtGKTTLA~aIA~~~~----------~~f~~lna~~~-~i~di 93 (725)
T PRK13341 28 EEFVGQDHILGE-GRLLRRAIKADR--VGSLILYGPPGVGKTTLARIIANHTR----------AHFSSLNAVLA-GVKDL 93 (725)
T ss_pred HHhcCcHHHhhh-hHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHhc----------Ccceeehhhhh-hhHHH
Confidence 446788887754 233333444443 46899999999999999999998765 34778887531 11111
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
.+ ....+...+. ..+...||||||+|.|....|+.|+..++ ...+++|++++.
T Consensus 94 ----r~-----------~i~~a~~~l~-------~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE-----~g~IiLI~aTTe 146 (725)
T PRK13341 94 ----RA-----------EVDRAKERLE-------RHGKRTILFIDEVHRFNKAQQDALLPWVE-----NGTITLIGATTE 146 (725)
T ss_pred ----HH-----------HHHHHHHHhh-------hcCCceEEEEeChhhCCHHHHHHHHHHhc-----CceEEEEEecCC
Confidence 11 1111111111 01245799999999998877888888775 356888887654
Q ss_pred CCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhc-------Cc-ccCcHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 003175 620 MDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLK-------GI-EAFEKQAIEFASRKVAAISGDARRALEICRR 691 (842)
Q Consensus 620 ~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~-------~~-~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~ 691 (842)
+....+.+++.||+. .+.|+|++.+++..|++..+. .. ..+++++++++++.. .||+|.++++++.
T Consensus 147 -np~~~l~~aL~SR~~--v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s---~GD~R~lln~Le~ 220 (725)
T PRK13341 147 -NPYFEVNKALVSRSR--LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA---NGDARSLLNALEL 220 (725)
T ss_pred -ChHhhhhhHhhcccc--ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 333467789999984 599999999999999999886 22 268899999988764 8999999999999
Q ss_pred HHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHH
Q 003175 692 AAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQE 728 (842)
Q Consensus 692 A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~ 728 (842)
++..+.... .+...|+.+++++++.+
T Consensus 221 a~~~~~~~~-----------~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 221 AVESTPPDE-----------DGLIDITLAIAEESIQQ 246 (725)
T ss_pred HHHhcccCC-----------CCceeccHHHHHHHHHH
Confidence 875432110 01234888888888765
No 93
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=4.2e-15 Score=174.50 Aligned_cols=213 Identities=18% Similarity=0.200 Sum_probs=146.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCC---------------CCce
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSI---------------RPYC 524 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~---------------~~~~ 524 (842)
+.++|.+..++.|...+.. +. .++.+||+||+|+|||++++.+++.+.+....... ....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~----~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAE----GR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD 90 (585)
T ss_pred HHhcCCHHHHHHHHHHHHh----CC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe
Confidence 5588999988877666654 22 46778999999999999999999999754321100 0123
Q ss_pred EEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCC
Q 003175 525 FVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWP 604 (842)
Q Consensus 525 ~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~ 604 (842)
++.+++...... .+..+.+ +.+... .......||||||+|.|....++.|+..++.+
T Consensus 91 ~~~i~~~~~~~v------------------d~ir~ii-~~~~~~----p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep 147 (585)
T PRK14950 91 VIEMDAASHTSV------------------DDAREII-ERVQFR----PALARYKVYIIDEVHMLSTAAFNALLKTLEEP 147 (585)
T ss_pred EEEEeccccCCH------------------HHHHHHH-HHHhhC----cccCCeEEEEEeChHhCCHHHHHHHHHHHhcC
Confidence 445554322221 1111111 111111 11235689999999999877788888888754
Q ss_pred CCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHH
Q 003175 605 TKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDAR 683 (842)
Q Consensus 605 ~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R 683 (842)
....+||++++. .+.+.+.++||+. .+.|.+++..++..++..++...+ .+++++++++++.+ .||+|
T Consensus 148 ---p~~tv~Il~t~~---~~kll~tI~SR~~--~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s---~Gdlr 216 (585)
T PRK14950 148 ---PPHAIFILATTE---VHKVPATILSRCQ--RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAA---TGSMR 216 (585)
T ss_pred ---CCCeEEEEEeCC---hhhhhHHHHhccc--eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---CCCHH
Confidence 345666666665 3667888999995 599999999999999999987655 58888888877654 79999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHH
Q 003175 684 RALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQE 728 (842)
Q Consensus 684 ~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~ 728 (842)
.+++.+.+...+ . ...|+.++|.+++..
T Consensus 217 ~al~~LekL~~y---~--------------~~~It~e~V~~ll~~ 244 (585)
T PRK14950 217 DAENLLQQLATT---Y--------------GGEISLSQVQSLLGI 244 (585)
T ss_pred HHHHHHHHHHHh---c--------------CCCCCHHHHHHHhcC
Confidence 999999876542 1 235888888776554
No 94
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.68 E-value=4.9e-16 Score=190.25 Aligned_cols=214 Identities=16% Similarity=0.164 Sum_probs=147.4
Q ss_pred ccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChH---HHHHHH------------------
Q 003175 485 CLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPE---NIYRVI------------------ 543 (842)
Q Consensus 485 ~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~---~~~~~i------------------ 543 (842)
.+++++||+||||||||.||+++|.+.. ++|+.|++..+.+.. .+...|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~----------VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSY----------VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcC----------CceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 3588999999999999999999999987 779999988765321 000000
Q ss_pred ----HHHHhCCC--CCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh-----HHHHHhhcCCC--CCCCc
Q 003175 544 ----YEALSGHR--VSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ-----SVLYNILDWPT--KPNSK 610 (842)
Q Consensus 544 ----~~~l~g~~--~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~-----~~L~~ll~~~~--~~~~~ 610 (842)
.+.+.+.. .........+...|..++. ..||||+|||||.|..+.. ..|.+.++... .....
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk-----~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~ 1772 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKA-----MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRN 1772 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHH-----CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCC
Confidence 00000000 0001112236677877754 3799999999999987642 44556665332 23567
Q ss_pred EEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHh--cCcccC-cHHHHHHHHHHHHHHhcCHHHH
Q 003175 611 LIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRL--KGIEAF-EKQAIEFASRKVAAISGDARRA 685 (842)
Q Consensus 611 vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l--~~~~~~-~~~~l~~ia~~~~~~~Gd~R~a 685 (842)
|+|||+||+ ++.+||++.+ ||+ +.|.++.++..++.+|+...+ .+...- +...++.+|+.+.+++| +..
T Consensus 1773 VIVIAATNR---PD~LDPALLRPGRFD-R~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSG--ADL 1846 (2281)
T CHL00206 1773 ILVIASTHI---PQKVDPALIAPNKLN-TCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNA--RDL 1846 (2281)
T ss_pred EEEEEeCCC---cccCCHhHcCCCCCC-eEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCH--HHH
Confidence 999999998 5788999987 999 799999999988888876433 222211 11235677777777666 333
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhC
Q 003175 686 LEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 686 l~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
..+|..|+.+|..+ +...|+.++|..|+..+...
T Consensus 1847 anLvNEAaliAirq-------------~ks~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1847 VALTNEALSISITQ-------------KKSIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HHHHHHHHHHHHHc-------------CCCccCHHHHHHHHHHHHhh
Confidence 46999999999877 35789999999999887654
No 95
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.67 E-value=5.7e-15 Score=162.03 Aligned_cols=210 Identities=23% Similarity=0.236 Sum_probs=146.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.+.|++..++.|..++.. +. ..+++|+|++|+|||++++.+++++..... ...++++++........+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~----~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-----~~~~i~~~~~~~~~~~~~ 85 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKE----KN--MPHLLFAGPPGTGKTTAALALARELYGEDW-----RENFLELNASDERGIDVI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhC----CC--CCeEEEECCCCCCHHHHHHHHHHHHcCCcc-----ccceEEeccccccchHHH
Confidence 4477999888888777753 32 346899999999999999999999864321 145677776543322111
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
...+.+ ... ..+.. .....+|+|||+|.|....++.|..+++... ....+|.++|.
T Consensus 86 ~~~i~~------------------~~~-~~~~~--~~~~~vviiDe~~~l~~~~~~~L~~~le~~~---~~~~lIl~~~~ 141 (319)
T PRK00440 86 RNKIKE------------------FAR-TAPVG--GAPFKIIFLDEADNLTSDAQQALRRTMEMYS---QNTRFILSCNY 141 (319)
T ss_pred HHHHHH------------------HHh-cCCCC--CCCceEEEEeCcccCCHHHHHHHHHHHhcCC---CCCeEEEEeCC
Confidence 111111 110 01111 1245799999999998777788888887543 23445556665
Q ss_pred CCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 003175 620 MDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADY 698 (842)
Q Consensus 620 ~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~ 698 (842)
...+.+.+.+|+. .+.|++++.+++..+++.++...+ .+++++++++++. ..||+|.+++.++.+...
T Consensus 142 ---~~~l~~~l~sr~~--~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~---~~gd~r~~~~~l~~~~~~--- 210 (319)
T PRK00440 142 ---SSKIIDPIQSRCA--VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYV---SEGDMRKAINALQAAAAT--- 210 (319)
T ss_pred ---ccccchhHHHHhh--eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHHc---
Confidence 3566778899986 599999999999999999998666 5899999998765 479999999999876642
Q ss_pred HHhhhccCCCcCCcCCCcccHHHHHHHHHHHh
Q 003175 699 RIKKQTSNKNSASVGKSLVGMADVEAAIQEMF 730 (842)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~ 730 (842)
...||.++|.+++....
T Consensus 211 ---------------~~~it~~~v~~~~~~~~ 227 (319)
T PRK00440 211 ---------------GKEVTEEAVYKITGTAR 227 (319)
T ss_pred ---------------CCCCCHHHHHHHhCCCC
Confidence 24688999888876443
No 96
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.67 E-value=1.3e-15 Score=162.89 Aligned_cols=208 Identities=23% Similarity=0.185 Sum_probs=140.7
Q ss_pred CCCCcHHHHHHHHHHHHHhh-----c-CC---cccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 461 FLPCRNKEMEDITAFIKGAT-----C-DD---QCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i-----~-~~---~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
.++|.++..++|.+++.-.. . .+ ..++.+++|+||||||||++|+.+++.+.... ....-.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g---~~~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLG---YVRKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcC---CcccceEEEecHH
Confidence 36788777777766533210 0 01 11245899999999999999999999987531 1222358888864
Q ss_pred cCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC---------ChHHHHHhhc
Q 003175 532 KLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR---------NQSVLYNILD 602 (842)
Q Consensus 532 ~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~---------~~~~L~~ll~ 602 (842)
.+. ..+.|... ..+.+.|..+ ...||||||++.|... .++.|+++++
T Consensus 100 ~l~----------~~~~g~~~------~~~~~~~~~a--------~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le 155 (284)
T TIGR02880 100 DLV----------GQYIGHTA------PKTKEILKRA--------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME 155 (284)
T ss_pred HHh----------Hhhcccch------HHHHHHHHHc--------cCcEEEEechhhhccCCCccchHHHHHHHHHHHHh
Confidence 321 12333221 1233444433 2379999999998422 1456777776
Q ss_pred CCCCCCCcEEEEEEeCC--CCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHH---
Q 003175 603 WPTKPNSKLIVIGIANT--MDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVA--- 676 (842)
Q Consensus 603 ~~~~~~~~vivI~~tn~--~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~--- 676 (842)
. ....++||++++. ++....+++.+.+||. ..|.||+|+.+++.+|+...+.... .+++++++.+...+.
T Consensus 156 ~---~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~-~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~ 231 (284)
T TIGR02880 156 N---QRDDLVVILAGYKDRMDSFFESNPGFSSRVA-HHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRR 231 (284)
T ss_pred c---CCCCEEEEEeCCcHHHHHHHhhCHHHHhhCC-cEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhC
Confidence 3 3467788877654 3444456799999998 5899999999999999999998754 678888887766544
Q ss_pred --HHhcCHHHHHHHHHHHHHHHHHH
Q 003175 677 --AISGDARRALEICRRAAEIADYR 699 (842)
Q Consensus 677 --~~~Gd~R~al~ll~~A~~~A~~~ 699 (842)
...||+|.+.+++++++..-..+
T Consensus 232 ~~~~~GN~R~lrn~ve~~~~~~~~r 256 (284)
T TIGR02880 232 TQPHFANARSIRNAIDRARLRQANR 256 (284)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHH
Confidence 45799999999988887655444
No 97
>smart00439 BAH Bromo adjacent homology domain.
Probab=99.67 E-value=4.7e-17 Score=151.53 Aligned_cols=97 Identities=25% Similarity=0.563 Sum_probs=90.0
Q ss_pred hhhhhhhhceeeccCCc-eEEEEEeecCCcccccCCCCCcccccccccCCccccccchhccceeeeCcccccccccCC--
Q 003175 266 DLWAANIQSMWKEVDGN-YWCRVFWYMIPEETAAGRQPHNLRRELYRTNDFANIEMESIIRHCSVMSPKDFVKANDQG-- 342 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~g~-~~~~~~w~~~peEt~~~~~~~~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~~~~~~-- 342 (842)
.+|+|+|.+||++.+|. .|++|+||+||+||.+++.+.+.+||||+|++.+++++++|.+||.|++.++|....+.+
T Consensus 18 ~~~i~~I~~i~~~~~~~~~~~~v~Wf~rp~e~~~~~~~~~~~~Elf~s~~~~~i~~~~I~~kc~V~~~~~~~~~~~~~~~ 97 (120)
T smart00439 18 PYYIGRIEEIFETKKNSEKMVRVRWFYRPEETVLEKAALFDKNEVFLSDEYDTVPLSDIIGKCNVLSKSDYPGLRPEGKI 97 (120)
T ss_pred CCEEEEEEEEEECCCCCEEEEEEEEEEChhhccccccccCCCcceEEEccCccCChHHeeeEEEEEEcchhcccccccCC
Confidence 57899999999999988 899999999999999998888899999999999999999999999999999999877663
Q ss_pred --CCEEEEeeEEecCccceeec
Q 003175 343 --DDIFLCEYEYDIHWHSFKRI 362 (842)
Q Consensus 343 --~~~~~C~~~y~~~~~~fk~i 362 (842)
+++|||++.|+..++.|..+
T Consensus 98 ~~~~~f~cr~~yd~~~~~f~~~ 119 (120)
T smart00439 98 GEPDVFFCESLYDPEKGAFKKL 119 (120)
T ss_pred CCCCeEEEEEEEccccCcccCC
Confidence 78999999999999998654
No 98
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=99.66 E-value=5.8e-17 Score=151.54 Aligned_cols=98 Identities=33% Similarity=0.654 Sum_probs=91.0
Q ss_pred hhhhhhhhhceeeccCCceEEEEEeecCCcccccCCCCCcccccccccCCccccccchhccceeeeCcccccccc----c
Q 003175 265 SDLWAANIQSMWKEVDGNYWCRVFWYMIPEETAAGRQPHNLRRELYRTNDFANIEMESIIRHCSVMSPKDFVKAN----D 340 (842)
Q Consensus 265 ~~~~~~~I~~i~~~~~g~~~~~~~w~~~peEt~~~~~~~~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~~~----~ 340 (842)
.++|+|+|.+||++.+|..|++|+||+||+||.++....+.+||||+|++.+++++++|.|+|.|+..++|.... .
T Consensus 21 ~~~~i~~I~~i~~~~~~~~~~~v~wf~rp~e~~~~~~~~~~~~Elf~s~~~~~i~v~~I~gkc~V~~~~~~~~~~~~~~~ 100 (123)
T cd04370 21 DPPYIARIEELWEDTNGSKQVKVRWFYRPEETPKGLSPFALRRELFLSDHLDEIPVESIIGKCKVLFVSEFEGLKQRPNK 100 (123)
T ss_pred CCCEEEEEeeeeECCCCCEEEEEEEEEchhHhccccccccccceeEEecCccccCHHHhccccEEEechHhhcccccccc
Confidence 468999999999999999999999999999999998888999999999999999999999999999999999763 2
Q ss_pred CCCCEEEEeeEEecCccceeec
Q 003175 341 QGDDIFLCEYEYDIHWHSFKRI 362 (842)
Q Consensus 341 ~~~~~~~C~~~y~~~~~~fk~i 362 (842)
..+++|||++.||...+.||.+
T Consensus 101 ~~~~~f~~r~~yd~~~~~fk~~ 122 (123)
T cd04370 101 IDTDDFFCRLAYDPTTKEFKAL 122 (123)
T ss_pred CCCCeEEEEEEECcCcceEEeC
Confidence 3588999999999999999976
No 99
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=7.2e-15 Score=171.84 Aligned_cols=196 Identities=17% Similarity=0.228 Sum_probs=137.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC----------------CCCc
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS----------------IRPY 523 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~----------------~~~~ 523 (842)
..++|.+..+..|..++.. +. .++++||+||+|+|||++|+.+++.+.+....+. ....
T Consensus 16 ~~liGq~~i~~~L~~~l~~----~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 16 DELVGQEAIATTLKNALIS----NR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred hhccChHHHHHHHHHHHHc----CC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCc
Confidence 5588988888877777764 22 3678999999999999999999999986421110 0001
Q ss_pred eEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcC
Q 003175 524 CFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDW 603 (842)
Q Consensus 524 ~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~ 603 (842)
.+++++.... .+.....+.+...... ...+...||||||+|.|....++.|+..++.
T Consensus 91 D~~ei~~~~~------------------~~vd~IReii~~a~~~-----p~~~~~KViIIDEad~Lt~~a~naLLK~LEe 147 (620)
T PRK14948 91 DVIEIDAASN------------------TGVDNIRELIERAQFA-----PVQARWKVYVIDECHMLSTAAFNALLKTLEE 147 (620)
T ss_pred cEEEEecccc------------------CCHHHHHHHHHHHhhC-----hhcCCceEEEEECccccCHHHHHHHHHHHhc
Confidence 2333332211 1222222222221111 1123567999999999988778889888884
Q ss_pred CCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCH
Q 003175 604 PTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDA 682 (842)
Q Consensus 604 ~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~ 682 (842)
+...++||++++. +..+.+.|+||+. .+.|.+++.+++...|...+...+ .++++++.++++. ..||+
T Consensus 148 ---Pp~~tvfIL~t~~---~~~llpTIrSRc~--~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~---s~G~l 216 (620)
T PRK14948 148 ---PPPRVVFVLATTD---PQRVLPTIISRCQ--RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQR---SQGGL 216 (620)
T ss_pred ---CCcCeEEEEEeCC---hhhhhHHHHhhee--EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH---cCCCH
Confidence 4567888888876 4678899999994 599999999999999988887654 6788888887766 47999
Q ss_pred HHHHHHHHHHHH
Q 003175 683 RRALEICRRAAE 694 (842)
Q Consensus 683 R~al~ll~~A~~ 694 (842)
|+|+++++....
T Consensus 217 r~A~~lLeklsL 228 (620)
T PRK14948 217 RDAESLLDQLSL 228 (620)
T ss_pred HHHHHHHHHHHh
Confidence 999998887543
No 100
>PRK04195 replication factor C large subunit; Provisional
Probab=99.66 E-value=2.9e-15 Score=172.66 Aligned_cols=186 Identities=18% Similarity=0.238 Sum_probs=135.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++|+++.++.|..++.....+. +..++||+||||||||++|++++++++ +.++++|+....+...+
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~--~~~~lLL~GppG~GKTtla~ala~el~----------~~~ielnasd~r~~~~i 81 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGK--PKKALLLYGPPGVGKTSLAHALANDYG----------WEVIELNASDQRTADVI 81 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCC--CCCeEEEECCCCCCHHHHHHHHHHHcC----------CCEEEEcccccccHHHH
Confidence 348899999999999998877544 278999999999999999999999985 56899998876654333
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC----ChHHHHHhhcCCCCCCCcEEEEE
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR----NQSVLYNILDWPTKPNSKLIVIG 615 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~----~~~~L~~ll~~~~~~~~~vivI~ 615 (842)
...+...... ...| .....||||||+|.|... ....|..+++ ....+++ .
T Consensus 82 ~~~i~~~~~~------------~sl~---------~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~---~~~~~iI--l 135 (482)
T PRK04195 82 ERVAGEAATS------------GSLF---------GARRKLILLDEVDGIHGNEDRGGARAILELIK---KAKQPII--L 135 (482)
T ss_pred HHHHHHhhcc------------Cccc---------CCCCeEEEEecCcccccccchhHHHHHHHHHH---cCCCCEE--E
Confidence 3332221100 0001 024689999999999763 2456666665 2233444 4
Q ss_pred EeCCCCCccccch-hhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 003175 616 IANTMDLPEKLLP-RISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRR 691 (842)
Q Consensus 616 ~tn~~dl~~~l~~-~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~ 691 (842)
++|.. ..+.. .+++|+. .|.|++++..++..+|...+...+ .+++++++.+++. ..||+|.+++.|+.
T Consensus 136 i~n~~---~~~~~k~Lrsr~~--~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~---s~GDlR~ain~Lq~ 205 (482)
T PRK04195 136 TANDP---YDPSLRELRNACL--MIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAER---SGGDLRSAINDLQA 205 (482)
T ss_pred eccCc---cccchhhHhccce--EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHH
Confidence 66763 33444 6778884 599999999999999999987655 6888899887765 48999999988876
No 101
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.66 E-value=1.6e-15 Score=148.47 Aligned_cols=193 Identities=22% Similarity=0.313 Sum_probs=141.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
..++|.|+-++++.-+... +. -.+++|+||||||||+.+..++++|-..... -.++++|++.-..-..+
T Consensus 27 ~dIVGNe~tv~rl~via~~----gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~k-----e~vLELNASdeRGIDvV 95 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE----GN--MPNLIISGPPGTGKTTSILCLARELLGDSYK-----EAVLELNASDERGIDVV 95 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc----CC--CCceEeeCCCCCchhhHHHHHHHHHhChhhh-----hHhhhccCccccccHHH
Confidence 3478999999998777665 32 4679999999999999999999998643211 12788888765543222
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
...| +.|.+.+- .--.++..||||||+|.+....|+.|...++..+. ..++++ +.|.
T Consensus 96 Rn~I-------------------K~FAQ~kv-~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~-ttRFal--aCN~ 152 (333)
T KOG0991|consen 96 RNKI-------------------KMFAQKKV-TLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSN-TTRFAL--ACNQ 152 (333)
T ss_pred HHHH-------------------HHHHHhhc-cCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcc-cchhhh--hhcc
Confidence 2221 22322211 11235778999999999999999999999997643 556666 5566
Q ss_pred CCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003175 620 MDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAE 694 (842)
Q Consensus 620 ~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~ 694 (842)
.+.+...+.|||.. +.|..++..++..-|....+... .+.++.++.+.. ...||+|+|++.++..+.
T Consensus 153 ---s~KIiEPIQSRCAi--LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiif---ta~GDMRQalNnLQst~~ 220 (333)
T KOG0991|consen 153 ---SEKIIEPIQSRCAI--LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIF---TAQGDMRQALNNLQSTVN 220 (333)
T ss_pred ---hhhhhhhHHhhhHh--hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhh---hccchHHHHHHHHHHHhc
Confidence 47788899999976 88999999998888877776554 677888887544 358999999999987654
No 102
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=7.7e-16 Score=171.50 Aligned_cols=215 Identities=20% Similarity=0.275 Sum_probs=155.9
Q ss_pred CcccccCcccHHHHHHHhccccC-CCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 435 PEHVRCHKQTELERAKATLLLAT-LPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 435 p~~~~~~~~~~~~~~~~~L~~~~-~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+...+|.++.+++.+++.|.... .|..++ ..+..+ +-....+||+|||||||||.||-+++...+
T Consensus 661 ~tgi~w~digg~~~~k~~l~~~i~~P~kyp----------~if~~~---plr~~~giLLyGppGcGKT~la~a~a~~~~- 726 (952)
T KOG0735|consen 661 STGIRWEDIGGLFEAKKVLEEVIEWPSKYP----------QIFANC---PLRLRTGILLYGPPGCGKTLLASAIASNSN- 726 (952)
T ss_pred cCCCCceecccHHHHHHHHHHHHhccccch----------HHHhhC---CcccccceEEECCCCCcHHHHHHHHHhhCC-
Confidence 34478888899988888887442 454444 222221 112357899999999999999999999876
Q ss_pred HhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC
Q 003175 514 EVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN 593 (842)
Q Consensus 514 ~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~ 593 (842)
+.||.|.|.++.+. .| | ...+.++..|..++. .+|||||+||+|.+++++
T Consensus 727 ---------~~fisvKGPElL~K-----yI-----G------aSEq~vR~lF~rA~~-----a~PCiLFFDEfdSiAPkR 776 (952)
T KOG0735|consen 727 ---------LRFISVKGPELLSK-----YI-----G------ASEQNVRDLFERAQS-----AKPCILFFDEFDSIAPKR 776 (952)
T ss_pred ---------eeEEEecCHHHHHH-----Hh-----c------ccHHHHHHHHHHhhc-----cCCeEEEeccccccCccc
Confidence 78999987664322 11 2 234556777776654 389999999999999875
Q ss_pred h-----------HHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCc
Q 003175 594 Q-----------SVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGI 660 (842)
Q Consensus 594 ~-----------~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~ 660 (842)
. +.|+.-+|... .-..|.|+++|.++ +.++|++.+ |++ +.+..+.++..++.+|++......
T Consensus 777 GhDsTGVTDRVVNQlLTelDG~E-gl~GV~i~aaTsRp---dliDpALLRpGRlD-~~v~C~~P~~~eRl~il~~ls~s~ 851 (952)
T KOG0735|consen 777 GHDSTGVTDRVVNQLLTELDGAE-GLDGVYILAATSRP---DLIDPALLRPGRLD-KLVYCPLPDEPERLEILQVLSNSL 851 (952)
T ss_pred CCCCCCchHHHHHHHHHhhcccc-ccceEEEEEecCCc---cccCHhhcCCCccc-eeeeCCCCCcHHHHHHHHHHhhcc
Confidence 2 44555566443 34568888899885 556777765 777 678899999999999999887766
Q ss_pred ccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 003175 661 EAFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRI 700 (842)
Q Consensus 661 ~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~ 700 (842)
..-++..++.+|.++++++|..-+ .+|..|-..|..+.
T Consensus 852 ~~~~~vdl~~~a~~T~g~tgADlq--~ll~~A~l~avh~~ 889 (952)
T KOG0735|consen 852 LKDTDVDLECLAQKTDGFTGADLQ--SLLYNAQLAAVHEI 889 (952)
T ss_pred CCccccchHHHhhhcCCCchhhHH--HHHHHHHHHHHHHH
Confidence 666777889999999999994433 37777777776553
No 103
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.66 E-value=1.4e-14 Score=163.72 Aligned_cols=201 Identities=20% Similarity=0.297 Sum_probs=143.4
Q ss_pred CCCCCcHHHHHH---HHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCCh
Q 003175 460 KFLPCRNKEMED---ITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASP 536 (842)
Q Consensus 460 ~~L~gRe~e~~~---l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~ 536 (842)
+.++|++..+.. |..++ .++. ..+++|+||||||||++++.+++.+. ..++.+++.... .
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i----~~~~--~~~ilL~GppGtGKTtLA~~ia~~~~----------~~~~~l~a~~~~-~ 74 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMI----EAGR--LSSMILWGPPGTGKTTLARIIAGATD----------APFEALSAVTSG-V 74 (413)
T ss_pred HHhcCcHHHhCcchHHHHHH----HcCC--CceEEEECCCCCCHHHHHHHHHHHhC----------CCEEEEeccccc-H
Confidence 457888877666 54444 3343 56899999999999999999999775 458888876421 1
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEE
Q 003175 537 ENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGI 616 (842)
Q Consensus 537 ~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~ 616 (842)
..+.. .+....... ..++..||||||+|.|....|+.|+..++ ...++||++
T Consensus 75 ~~ir~------------------ii~~~~~~~-----~~g~~~vL~IDEi~~l~~~~q~~LL~~le-----~~~iilI~a 126 (413)
T PRK13342 75 KDLRE------------------VIEEARQRR-----SAGRRTILFIDEIHRFNKAQQDALLPHVE-----DGTITLIGA 126 (413)
T ss_pred HHHHH------------------HHHHHHHhh-----hcCCceEEEEechhhhCHHHHHHHHHHhh-----cCcEEEEEe
Confidence 11111 111111000 01256899999999998877888888876 346788877
Q ss_pred eCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc--c--cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 003175 617 ANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI--E--AFEKQAIEFASRKVAAISGDARRALEICRRA 692 (842)
Q Consensus 617 tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~--~--~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A 692 (842)
++. +....+.+.+.||| ..+.|++++.+++..+|...+... + .+++++++.+++. ..||+|.+++++..+
T Consensus 127 tt~-n~~~~l~~aL~SR~--~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~---s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 127 TTE-NPSFEVNPALLSRA--QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARL---ANGDARRALNLLELA 200 (413)
T ss_pred CCC-ChhhhccHHHhccc--eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 643 23456788999999 469999999999999999887542 1 4788888887765 489999999999988
Q ss_pred HHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHH
Q 003175 693 AEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEM 729 (842)
Q Consensus 693 ~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~ 729 (842)
+.. ...|+.+++..++...
T Consensus 201 ~~~------------------~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 201 ALG------------------VDSITLELLEEALQKR 219 (413)
T ss_pred HHc------------------cCCCCHHHHHHHHhhh
Confidence 754 1358888888887653
No 104
>PRK06893 DNA replication initiation factor; Validated
Probab=99.65 E-value=2.7e-15 Score=155.82 Aligned_cols=186 Identities=11% Similarity=0.160 Sum_probs=128.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
...+||+||||||||+|++++++++.... ..++|++...... .. . +.+. .+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~-------~~~~y~~~~~~~~---~~--------------~---~~~~-~~- 89 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQ-------RTAIYIPLSKSQY---FS--------------P---AVLE-NL- 89 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC-------CCeEEeeHHHhhh---hh--------------H---HHHh-hc-
Confidence 46789999999999999999999987541 2355655421100 00 0 0111 11
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCC--hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCc-eeEEecC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRN--QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGV-QRLCFGP 643 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~--~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~-~~i~f~p 643 (842)
.+..+|+|||++.+.... +..|+.+++.....+..++|++....+......++.+.||+.. ..+.+++
T Consensus 90 ---------~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~ 160 (229)
T PRK06893 90 ---------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLND 160 (229)
T ss_pred ---------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCC
Confidence 134699999999987543 4578888875544344555554444444445566899999853 4678999
Q ss_pred CCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHH
Q 003175 644 YNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADV 722 (842)
Q Consensus 644 ~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv 722 (842)
++.+++.+||+..+...+ .+++++++++++.. .||+|.++.++.+....+..+ ...||...+
T Consensus 161 pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~---~~d~r~l~~~l~~l~~~~~~~--------------~~~it~~~v 223 (229)
T PRK06893 161 LTDEQKIIVLQRNAYQRGIELSDEVANFLLKRL---DRDMHTLFDALDLLDKASLQA--------------QRKLTIPFV 223 (229)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHhc--------------CCCCCHHHH
Confidence 999999999998886544 68999999988774 899999998888764333221 246999998
Q ss_pred HHHHH
Q 003175 723 EAAIQ 727 (842)
Q Consensus 723 ~~A~~ 727 (842)
++++.
T Consensus 224 ~~~L~ 228 (229)
T PRK06893 224 KEILG 228 (229)
T ss_pred HHHhc
Confidence 88763
No 105
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=9.2e-15 Score=163.34 Aligned_cols=212 Identities=19% Similarity=0.264 Sum_probs=146.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhc--CCCCCceEEEEecccCCChH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVES--GSIRPYCFVEVNGLKLASPE 537 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~--~~~~~~~~v~in~~~~~s~~ 537 (842)
+.++|++..++.+...+.. +. .++++|||||||+|||++++.+++.+.+.... .....+.++++++.......
T Consensus 17 ~~iig~~~~~~~l~~~i~~----~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIEN----NH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHc----CC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 5578999888777777654 32 46789999999999999999999998753211 11123455666654332222
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEe
Q 003175 538 NIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIA 617 (842)
Q Consensus 538 ~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~t 617 (842)
++... +.+. ... ...+...||||||+|.+....++.|+..++. +....+||+++
T Consensus 92 ~i~~l------------------~~~~-~~~----p~~~~~kiviIDE~~~l~~~~~~~ll~~le~---~~~~~~~Il~~ 145 (367)
T PRK14970 92 DIRNL------------------IDQV-RIP----PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE---PPAHAIFILAT 145 (367)
T ss_pred HHHHH------------------HHHH-hhc----cccCCcEEEEEeChhhcCHHHHHHHHHHHhC---CCCceEEEEEe
Confidence 22211 1111 000 1113557999999999987667777777764 23445666666
Q ss_pred CCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 003175 618 NTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIA 696 (842)
Q Consensus 618 n~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A 696 (842)
+. ...+.+.+.||+. .+.|.+++.+++..++...+...+ .++++++++++.. ..||+|.+++.+.....++
T Consensus 146 ~~---~~kl~~~l~sr~~--~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~---~~gdlr~~~~~lekl~~y~ 217 (367)
T PRK14970 146 TE---KHKIIPTILSRCQ--IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQK---ADGALRDALSIFDRVVTFC 217 (367)
T ss_pred CC---cccCCHHHHhcce--eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHhc
Confidence 54 4678889999995 599999999999999999887666 5899999998776 4789999999998877654
Q ss_pred HHHHhhhccCCCcCCcCCCcccHHHHHHHHH
Q 003175 697 DYRIKKQTSNKNSASVGKSLVGMADVEAAIQ 727 (842)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~ 727 (842)
. .. |+.++|..++.
T Consensus 218 ~----------------~~-it~~~v~~~~~ 231 (367)
T PRK14970 218 G----------------KN-ITRQAVTENLN 231 (367)
T ss_pred C----------------CC-CCHHHHHHHhC
Confidence 2 12 77777776654
No 106
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2e-15 Score=171.20 Aligned_cols=225 Identities=22% Similarity=0.290 Sum_probs=164.2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhc------CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEec
Q 003175 457 TLPKFLPCRNKEMEDITAFIKGATC------DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNG 530 (842)
Q Consensus 457 ~~p~~L~gRe~e~~~l~~~l~~~i~------~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~ 530 (842)
..+....|.++..+++.+.+.-... -|...+.+++++||||||||.|+++++.+.. ++|+++++
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~----------VPFf~iSG 216 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG----------VPFFSISG 216 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC----------CCceeccc
Confidence 3456677777666666555543221 1335689999999999999999999999877 78999998
Q ss_pred ccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh--------------HH
Q 003175 531 LKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ--------------SV 596 (842)
Q Consensus 531 ~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~--------------~~ 596 (842)
+.+.. .+.|... ..+++.|.++++ ..||||||||+|.+...+. +.
T Consensus 217 S~FVe----------mfVGvGA------sRVRdLF~qAkk-----~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQ 275 (596)
T COG0465 217 SDFVE----------MFVGVGA------SRVRDLFEQAKK-----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQ 275 (596)
T ss_pred hhhhh----------hhcCCCc------HHHHHHHHHhhc-----cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHH
Confidence 77542 2333221 345566666643 4789999999999987541 33
Q ss_pred HHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHH
Q 003175 597 LYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRK 674 (842)
Q Consensus 597 L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~ 674 (842)
|+.-+|... .+..|+||++||++| -+++.|.+ ||. ++|.++.|+...+.+|++-+++....-.+.-+..+++.
T Consensus 276 lLvEmDGF~-~~~gviviaaTNRpd---VlD~ALlRpgRFD-RqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~ 350 (596)
T COG0465 276 LLVEMDGFG-GNEGVIVIAATNRPD---VLDPALLRPGRFD-RQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARG 350 (596)
T ss_pred HHhhhccCC-CCCceEEEecCCCcc---cchHhhcCCCCcc-eeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhh
Confidence 444455543 567899999999964 45666655 788 78999999999999999999887654455556668888
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhC
Q 003175 675 VAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 675 ~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
+.+.+|..- .+++..|+.+|.+++ ...|++.||.+|+.++...
T Consensus 351 tpGfsGAdL--~nl~NEAal~aar~n-------------~~~i~~~~i~ea~drv~~G 393 (596)
T COG0465 351 TPGFSGADL--ANLLNEAALLAARRN-------------KKEITMRDIEEAIDRVIAG 393 (596)
T ss_pred CCCcccchH--hhhHHHHHHHHHHhc-------------CeeEeccchHHHHHHHhcC
Confidence 888888442 478889999888773 5779999999998887643
No 107
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.64 E-value=1.3e-14 Score=174.98 Aligned_cols=238 Identities=19% Similarity=0.213 Sum_probs=163.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++||+++++++.+.|... ..++++|+||||||||++++.+++.+........+....++.+++..+..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a---- 251 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLA---- 251 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhh----
Confidence 34889999999988777542 25678999999999999999999998642111111235677777543321
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----hHHHHHhhcCCCCCCCcEEEE
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----QSVLYNILDWPTKPNSKLIVI 614 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----~~~L~~ll~~~~~~~~~vivI 614 (842)
|.. ...+..+.+.+.|.+... ..++||||||+|.|.... .....++|. +......+.+|
T Consensus 252 ---------~~~-~~g~~e~~l~~i~~~~~~-----~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~-~~l~~g~i~~I 315 (731)
T TIGR02639 252 ---------GTK-YRGDFEERLKAVVSEIEK-----EPNAILFIDEIHTIVGAGATSGGSMDASNLLK-PALSSGKLRCI 315 (731)
T ss_pred ---------hcc-ccchHHHHHHHHHHHHhc-----cCCeEEEEecHHHHhccCCCCCccHHHHHHHH-HHHhCCCeEEE
Confidence 100 012333455556654422 246899999999997531 112333333 12236789999
Q ss_pred EEeCCCCCc--cccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc----c-cCcHHHHHHHHHHHHHHhcC---HHH
Q 003175 615 GIANTMDLP--EKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI----E-AFEKQAIEFASRKVAAISGD---ARR 684 (842)
Q Consensus 615 ~~tn~~dl~--~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~----~-~~~~~~l~~ia~~~~~~~Gd---~R~ 684 (842)
|+||..++. ...++.+.+||. .|.|++++.+++.+||+...... . .+++++++.++.....+-++ +++
T Consensus 316 gaTt~~e~~~~~~~d~al~rRf~--~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~k 393 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSRRFQ--KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDK 393 (731)
T ss_pred EecCHHHHHHHhhhhHHHHHhCc--eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHH
Confidence 999874432 235789999996 59999999999999999766432 2 58999999999998888777 899
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChH
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPH 734 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~ 734 (842)
|++++..|...+..+. .......|+.+||..++..+.+-+.
T Consensus 394 ai~lld~a~a~~~~~~---------~~~~~~~v~~~~i~~~i~~~tgiP~ 434 (731)
T TIGR02639 394 AIDVIDEAGASFRLRP---------KAKKKANVSVKDIENVVAKMAHIPV 434 (731)
T ss_pred HHHHHHHhhhhhhcCc---------ccccccccCHHHHHHHHHHHhCCCh
Confidence 9999998876543210 0011356999999999998866543
No 108
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.64 E-value=9.8e-15 Score=164.85 Aligned_cols=250 Identities=15% Similarity=0.206 Sum_probs=164.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
.+.+||||++|+|||+|++++++++... ...++|+++..+ ...+...+.+. ....+...+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~-------~~~v~yi~~~~f------~~~~~~~l~~~------~~~~f~~~~- 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES-------GGKILYVRSELF------TEHLVSAIRSG------EMQRFRQFY- 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEeeHHHH------HHHHHHHHhcc------hHHHHHHHc-
Confidence 3679999999999999999999998753 155888876543 22333333211 111222222
Q ss_pred cccCCCCCCCCcEEEEEecCcccccC--ChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCc-eeEEecC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTR--NQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGV-QRLCFGP 643 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~--~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~-~~i~f~p 643 (842)
....||+|||++.+..+ .|+.|+.+++.....+ +.+|+++.+.+.....+++++.|||.. ..+.+.+
T Consensus 201 ---------~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~-k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~ 270 (445)
T PRK12422 201 ---------RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEG-KLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHP 270 (445)
T ss_pred ---------ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCC-CcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCC
Confidence 14469999999999764 4677888876443223 344443333344445678999999953 5789999
Q ss_pred CCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHHHhhhccC--------CCcCC-c
Q 003175 644 YNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEI-ADYRIKKQTSN--------KNSAS-V 712 (842)
Q Consensus 644 ~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~-A~~~~~~~~~~--------~~~~~-~ 712 (842)
++.+++..||+.++...+ .++++++++++..+ .||+|.++..+.+.+.. |.......... .+... .
T Consensus 271 pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~---~~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~~~ 347 (445)
T PRK12422 271 LTKEGLRSFLERKAEALSIRIEETALDFLIEAL---SSNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLEAA 347 (445)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhhcc
Confidence 999999999999998765 68999999988764 79999988888777421 22211100000 00001 1
Q ss_pred CCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHH---HHHHHHHHHcCCcceeHHHHH
Q 003175 713 GKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFL---TAMVYELYKTGMGETNFEKLA 770 (842)
Q Consensus 713 ~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL---~a~~~~~~~~g~~~~~~~~v~ 770 (842)
....||.+.|.+++.+.++-... .|.+-+....+++ +||+.....++.+...+|+.|
T Consensus 348 ~~~~~t~~~I~~~Va~~~~v~~~-dl~s~~R~~~i~~~Rqiamyl~r~~t~~s~~~IG~~f 407 (445)
T PRK12422 348 ESVRLTPSKIIRAVAQYYGVSPE-SILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVF 407 (445)
T ss_pred cCCCCCHHHHHHHHHHHhCCCHH-HHhcCCCCcccccHHHHHHHHHHHhcCCCHHHHHHHh
Confidence 12358999999999998875444 4555555544444 677777667777766677666
No 109
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.63 E-value=2.8e-15 Score=159.11 Aligned_cols=156 Identities=18% Similarity=0.191 Sum_probs=116.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
.+..++|+||||||||+++++++++++ ..++.+++.++.+. . ..+..+.|.++|
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg----------~~~i~vsa~eL~sk----------~------vGEsEk~IR~~F 200 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMG----------IEPIVMSAGELESE----------N------AGEPGKLIRQRY 200 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcC----------CCeEEEEHHHhhcC----------c------CCcHHHHHHHHH
Confidence 478999999999999999999999997 56899998776543 1 225567788888
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCC---------h---HHHHHhhcCC-----------CCCCCcEEEEEEeCCCCC
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRN---------Q---SVLYNILDWP-----------TKPNSKLIVIGIANTMDL 622 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~---------~---~~L~~ll~~~-----------~~~~~~vivI~~tn~~dl 622 (842)
..+........+|+||||||||.+..+. | ..|.+++|.+ .....+|.||++||+
T Consensus 201 ~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNr--- 277 (413)
T PLN00020 201 REAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGND--- 277 (413)
T ss_pred HHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCC---
Confidence 7775443345689999999999998753 1 2356666532 234567999999999
Q ss_pred ccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHH
Q 003175 623 PEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRK 674 (842)
Q Consensus 623 ~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~ 674 (842)
++.|++.|.+ ||.. . |..|+.+++.+||+.+++..+ ++...+..+++.
T Consensus 278 pd~LDpALlRpGRfDk-~--i~lPd~e~R~eIL~~~~r~~~-l~~~dv~~Lv~~ 327 (413)
T PLN00020 278 FSTLYAPLIRDGRMEK-F--YWAPTREDRIGVVHGIFRDDG-VSREDVVKLVDT 327 (413)
T ss_pred cccCCHhHcCCCCCCc-e--eCCCCHHHHHHHHHHHhccCC-CCHHHHHHHHHc
Confidence 5778999988 8973 3 458999999999999988754 334444444443
No 110
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=2.4e-14 Score=167.52 Aligned_cols=198 Identities=19% Similarity=0.236 Sum_probs=142.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhc---------------CCCCCce
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVES---------------GSIRPYC 524 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~---------------~~~~~~~ 524 (842)
+.++|.+...+.|...+.. +. .++.+||+||+|+|||++++.+++.+.+.... .....+.
T Consensus 17 ~~viGq~~~~~~L~~~i~~----~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIAT----NK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHc----CC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 5688988888887777654 32 46789999999999999999999998743211 0111245
Q ss_pred EEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCC
Q 003175 525 FVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWP 604 (842)
Q Consensus 525 ~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~ 604 (842)
++++++....+..++... +... ... + ..+...|+||||+|.|....++.|+.+++.+
T Consensus 92 ~~~ld~~~~~~vd~Ir~l------------------i~~~-~~~-P---~~~~~KVvIIdea~~Ls~~a~naLLK~LEep 148 (614)
T PRK14971 92 IHELDAASNNSVDDIRNL------------------IEQV-RIP-P---QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP 148 (614)
T ss_pred eEEecccccCCHHHHHHH------------------HHHH-hhC-c---ccCCcEEEEEECcccCCHHHHHHHHHHHhCC
Confidence 666666543322222222 2111 100 1 1135679999999999887888999999854
Q ss_pred CCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHH
Q 003175 605 TKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDAR 683 (842)
Q Consensus 605 ~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R 683 (842)
....+||++++. ...+.+.|+||+. .+.|.+++.+++..+|...+...+ .++++++++++..+ .||+|
T Consensus 149 ---p~~tifIL~tt~---~~kIl~tI~SRc~--iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s---~gdlr 217 (614)
T PRK14971 149 ---PSYAIFILATTE---KHKILPTILSRCQ--IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKA---DGGMR 217 (614)
T ss_pred ---CCCeEEEEEeCC---chhchHHHHhhhh--eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---CCCHH
Confidence 446677777765 4788899999995 499999999999999999887665 67888898887764 79999
Q ss_pred HHHHHHHHHHHHH
Q 003175 684 RALEICRRAAEIA 696 (842)
Q Consensus 684 ~al~ll~~A~~~A 696 (842)
.|++.+.....++
T Consensus 218 ~al~~Lekl~~y~ 230 (614)
T PRK14971 218 DALSIFDQVVSFT 230 (614)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998877654
No 111
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.62 E-value=9.8e-15 Score=152.17 Aligned_cols=185 Identities=11% Similarity=0.133 Sum_probs=127.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
+.+++|+||+|+|||+|++++++++... ...++|++....... ..+ +.+.+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------~~~v~y~~~~~~~~~-----------------~~~----~~~~~~ 96 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQR-------GRAVGYVPLDKRAWF-----------------VPE----VLEGME 96 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEHHHHhhh-----------------hHH----HHHHhh
Confidence 5689999999999999999999988743 134666665331110 001 111111
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCC--hHHHHHhhcCCCCCCCcEEEEEEeCC-CCCccccchhhhccCCc-eeEEec
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRN--QSVLYNILDWPTKPNSKLIVIGIANT-MDLPEKLLPRISSRMGV-QRLCFG 642 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~--~~~L~~ll~~~~~~~~~vivI~~tn~-~dl~~~l~~~l~sR~~~-~~i~f~ 642 (842)
...+|+|||+|.+..+. +..|+.+++.... ..+..||++++. +.....+.+.+.||+.. ..+.+.
T Consensus 97 ----------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~ 165 (235)
T PRK08084 97 ----------QLSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQ 165 (235)
T ss_pred ----------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeec
Confidence 22589999999997653 5667777764432 233334445553 22233467999999953 468999
Q ss_pred CCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHH
Q 003175 643 PYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMAD 721 (842)
Q Consensus 643 p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~d 721 (842)
+++.+++.+||+.++...+ .+++++++++++.+ .||+|.++.++.+....+..+ ...||.+.
T Consensus 166 ~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~---~~d~r~l~~~l~~l~~~~l~~--------------~~~it~~~ 228 (235)
T PRK08084 166 PLSDEEKLQALQLRARLRGFELPEDVGRFLLKRL---DREMRTLFMTLDQLDRASITA--------------QRKLTIPF 228 (235)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHhc--------------CCCCCHHH
Confidence 9999999999998776544 68999999988775 899999999988854333222 34699998
Q ss_pred HHHHHH
Q 003175 722 VEAAIQ 727 (842)
Q Consensus 722 v~~A~~ 727 (842)
+++++.
T Consensus 229 ~k~~l~ 234 (235)
T PRK08084 229 VKEILK 234 (235)
T ss_pred HHHHHc
Confidence 888763
No 112
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.62 E-value=7.3e-15 Score=177.79 Aligned_cols=235 Identities=20% Similarity=0.298 Sum_probs=157.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcC-------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 460 KFLPCRNKEMEDITAFIKGATCD-------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~-------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
+.+.|.+++++.|.+++...+.. +-..+.++||+||||||||++++++++++. ..++.+++..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~----------~~~i~i~~~~ 247 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG----------AYFISINGPE 247 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC----------CeEEEEecHH
Confidence 44667777777777776543322 223468899999999999999999999875 4588998765
Q ss_pred CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhh
Q 003175 533 LASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNIL 601 (842)
Q Consensus 533 ~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll 601 (842)
+.+. ..| .....+...|..+.. ..|.||||||+|.+.... ++.|++++
T Consensus 248 i~~~----------~~g------~~~~~l~~lf~~a~~-----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~l 306 (733)
T TIGR01243 248 IMSK----------YYG------ESEERLREIFKEAEE-----NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLM 306 (733)
T ss_pred Hhcc----------ccc------HHHHHHHHHHHHHHh-----cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHh
Confidence 4432 011 223345555554422 367899999999997643 23466666
Q ss_pred cCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHh
Q 003175 602 DWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAIS 679 (842)
Q Consensus 602 ~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~ 679 (842)
+.. .....++||+++|.+ +.+++.+.+ ||. ..|.|+.++.+++.+||+.........++..++.++..+.++.
T Consensus 307 d~l-~~~~~vivI~atn~~---~~ld~al~r~gRfd-~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 307 DGL-KGRGRVIVIGATNRP---DALDPALRRPGRFD-REIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFV 381 (733)
T ss_pred hcc-ccCCCEEEEeecCCh---hhcCHHHhCchhcc-EEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCC
Confidence 644 235689999999984 567777765 887 6899999999999999998887665555556777777776666
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhhcc---CC---CcCCcCCCcccHHHHHHHHHHHhhC
Q 003175 680 GDARRALEICRRAAEIADYRIKKQTS---NK---NSASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 680 Gd~R~al~ll~~A~~~A~~~~~~~~~---~~---~~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
|... ..+|+.|+..+..+...... .. .........|+.+||..|+..+..+
T Consensus 382 gadl--~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 382 GADL--AALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred HHHH--HHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhcccc
Confidence 6322 34778887777655322100 00 0011123468889999888766543
No 113
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.62 E-value=3.8e-14 Score=154.83 Aligned_cols=252 Identities=17% Similarity=0.209 Sum_probs=170.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
..+.+||||+.|.|||+|++++.++..... ++..++|+....+ +..+...+.. +..+.+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~-----~~a~v~y~~se~f------~~~~v~a~~~------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANG-----PNARVVYLTSEDF------TNDFVKALRD------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhC-----CCceEEeccHHHH------HHHHHHHHHh------hhHHHHHHhh
Confidence 468899999999999999999999988653 3467888865443 3333332211 2233444444
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCC--hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCc-eeEEec
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRN--QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGV-QRLCFG 642 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~--~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~-~~i~f~ 642 (842)
.. -+|+||+++.+..+. |..|..+|+.....+. -+|+.....+.-...++++|+|||.. ..+.+.
T Consensus 175 -~~----------dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~ 242 (408)
T COG0593 175 -SL----------DLLLIDDIQFLAGKERTQEEFFHTFNALLENGK-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIE 242 (408)
T ss_pred -cc----------CeeeechHhHhcCChhHHHHHHHHHHHHHhcCC-EEEEEcCCCchhhccccHHHHHHHhceeEEeeC
Confidence 22 599999999999864 8889999886544333 44443333344456677999999976 668899
Q ss_pred CCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccC------CCcCCcCCC
Q 003175 643 PYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSN------KNSASVGKS 715 (842)
Q Consensus 643 p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~------~~~~~~~~~ 715 (842)
||+.+.+..||+.+.+..+ .++++++++++..+ ..|+|.+..++.+....|.........+ .........
T Consensus 243 ~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~---~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~~ 319 (408)
T COG0593 243 PPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRL---DRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGEK 319 (408)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhccccc
Confidence 9999999999999887665 78999999988775 7788888777777776665443211100 011111225
Q ss_pred cccHHHHHHHHHHHhhChHHHHHhhCchHHHHHH---HHHHHHHHHcCCcceeHHHHHH
Q 003175 716 LVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFL---TAMVYELYKTGMGETNFEKLAM 771 (842)
Q Consensus 716 ~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL---~a~~~~~~~~g~~~~~~~~v~~ 771 (842)
||+++|.+++.+.++-...+ +.+-+....+++ +||+.....+..+...+|+.|.
T Consensus 320 -itie~I~~~Va~~y~v~~~d-l~s~~R~~~i~~~RqiamyL~r~lt~~Slp~IG~~Fg 376 (408)
T COG0593 320 -ITIEDIQKIVAEYYNVKVSD-LLSKSRTRNIVRPRQIAMYLARELTNLSLPEIGKAFG 376 (408)
T ss_pred -CCHHHHHHHHHHHhCCCHHH-hhccccccccchHHHHHHHHHHHHccCcHHHHHHHhC
Confidence 99999999999998754444 444344333333 5677665567777666777663
No 114
>PRK08727 hypothetical protein; Validated
Probab=99.61 E-value=2e-14 Score=149.68 Aligned_cols=184 Identities=16% Similarity=0.211 Sum_probs=129.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
...++|+|++|||||+|+++++.++.... ..++|++...... .+. +.+. .+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~-------~~~~y~~~~~~~~------~~~--------------~~~~-~l- 91 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAG-------RSSAYLPLQAAAG------RLR--------------DALE-AL- 91 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC-------CcEEEEeHHHhhh------hHH--------------HHHH-HH-
Confidence 46799999999999999999999877531 4567776433111 111 1111 11
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCC--hHHHHHhhcCCCCCCCcEEEEEEeCC-CCCccccchhhhccCCc-eeEEec
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRN--QSVLYNILDWPTKPNSKLIVIGIANT-MDLPEKLLPRISSRMGV-QRLCFG 642 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~--~~~L~~ll~~~~~~~~~vivI~~tn~-~dl~~~l~~~l~sR~~~-~~i~f~ 642 (842)
...-+|+|||+|.+.... +..|+.+++.....+ ..||.++|. +.....+++.+.|||.. ..+.|+
T Consensus 92 ---------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~--~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~ 160 (233)
T PRK08727 92 ---------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAG--ITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLP 160 (233)
T ss_pred ---------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcC--CeEEEECCCChhhhhhhhHHHHHHHhcCceEEec
Confidence 134699999999997543 567888877543222 334446664 33334567999999744 478999
Q ss_pred CCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHH
Q 003175 643 PYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMAD 721 (842)
Q Consensus 643 p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~d 721 (842)
+|+.+++.+||+.++...+ .+++++++++++.. .||+|.+++++......+... ...||.+.
T Consensus 161 ~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~---~rd~r~~l~~L~~l~~~~~~~--------------~~~it~~~ 223 (233)
T PRK08727 161 VLDDVARAAVLRERAQRRGLALDEAAIDWLLTHG---ERELAGLVALLDRLDRESLAA--------------KRRVTVPF 223 (233)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHh--------------CCCCCHHH
Confidence 9999999999999876444 68999999988774 699999999998776544433 23689999
Q ss_pred HHHHHH
Q 003175 722 VEAAIQ 727 (842)
Q Consensus 722 v~~A~~ 727 (842)
+++++.
T Consensus 224 ~~~~l~ 229 (233)
T PRK08727 224 LRRVLE 229 (233)
T ss_pred HHHHHh
Confidence 888775
No 115
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.61 E-value=6.4e-15 Score=174.42 Aligned_cols=194 Identities=24% Similarity=0.404 Sum_probs=137.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
.+.+++|+||||||||++++++++++. .+|+.+++..+.. ...|. ....+...|
T Consensus 184 ~~~gill~G~~G~GKt~~~~~~a~~~~----------~~f~~is~~~~~~----------~~~g~------~~~~~~~~f 237 (644)
T PRK10733 184 IPKGVLMVGPPGTGKTLLAKAIAGEAK----------VPFFTISGSDFVE----------MFVGV------GASRVRDMF 237 (644)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcC----------CCEEEEehHHhHH----------hhhcc------cHHHHHHHH
Confidence 356799999999999999999998876 5688888765432 11121 112334444
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCCh-----------HHHHHhh---cCCCCCCCcEEEEEEeCCCCCccccchhhh
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRNQ-----------SVLYNIL---DWPTKPNSKLIVIGIANTMDLPEKLLPRIS 631 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~~-----------~~L~~ll---~~~~~~~~~vivI~~tn~~dl~~~l~~~l~ 631 (842)
..+.. ..|+||||||+|.+...+. ..|..++ +.. .....++||++||. ++.+++++.
T Consensus 238 ~~a~~-----~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~-~~~~~vivIaaTN~---p~~lD~Al~ 308 (644)
T PRK10733 238 EQAKK-----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF-EGNEGIIVIAATNR---PDVLDPALL 308 (644)
T ss_pred HHHHh-----cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcc-cCCCCeeEEEecCC---hhhcCHHHh
Confidence 44322 3689999999999965321 2344443 322 23567999999998 577888887
Q ss_pred c--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 003175 632 S--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKN 708 (842)
Q Consensus 632 s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~ 708 (842)
+ ||+ +.|.|+.|+.+++.+||+.++...+...+..+..+++.+.+++| |+ .++|+.|+..|.++
T Consensus 309 RpgRfd-r~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl---~~l~~eAa~~a~r~--------- 375 (644)
T PRK10733 309 RPGRFD-RQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADL---ANLVNEAALFAARG--------- 375 (644)
T ss_pred CCcccc-eEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHH---HHHHHHHHHHHHHc---------
Confidence 5 898 78999999999999999999987654344445566666555554 44 46899999888765
Q ss_pred cCCcCCCcccHHHHHHHHHHHhh
Q 003175 709 SASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 709 ~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
+...|+..|+..|+..+..
T Consensus 376 ----~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 376 ----NKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred ----CCCcccHHHHHHHHHHHhc
Confidence 3568999999999876643
No 116
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.61 E-value=7.9e-15 Score=169.83 Aligned_cols=237 Identities=22% Similarity=0.291 Sum_probs=154.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCC-ChHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLA-SPEN 538 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~-s~~~ 538 (842)
+.++|++..++.+...+ ... .+.+++|+||||||||++|+.+.+.+.+...........|+.+||.... +...
T Consensus 65 ~~iiGqs~~i~~l~~al----~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~ 138 (531)
T TIGR02902 65 DEIIGQEEGIKALKAAL----CGP--NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERG 138 (531)
T ss_pred HHeeCcHHHHHHHHHHH----hCC--CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccc
Confidence 45899999998887654 222 2578999999999999999999887654321111112468999987421 1111
Q ss_pred HHHHHHHHHhCCCC-CHHHHHHHHHH-HhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC-----------
Q 003175 539 IYRVIYEALSGHRV-SWKKALHSLNE-RFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT----------- 605 (842)
Q Consensus 539 ~~~~i~~~l~g~~~-~~~~~~~~L~~-~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~----------- 605 (842)
+ .+.+.|... ........+.. -......-.-......+|||||+|.|....|+.|+.+++...
T Consensus 139 ~----~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~ 214 (531)
T TIGR02902 139 I----ADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSE 214 (531)
T ss_pred c----chhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecccccccc
Confidence 1 111111100 00000000000 000000000011245799999999999988999998885321
Q ss_pred --------------CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHH
Q 003175 606 --------------KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEF 670 (842)
Q Consensus 606 --------------~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ 670 (842)
.-...+.+|++|+.. ++.+.+.+++|+. .|.|++|+.+++.+|++..++..+ .++++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~d~rlI~ATt~~--p~~L~paLrsR~~--~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~ 290 (531)
T TIGR02902 215 NPNIPSHIHDIFQNGLPADFRLIGATTRN--PEEIPPALRSRCV--EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALEL 290 (531)
T ss_pred CcccccchhhhcccCcccceEEEEEecCC--cccCChHHhhhhh--eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHH
Confidence 012345666665542 5678899999994 699999999999999999998765 788999988
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHH
Q 003175 671 ASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQ 727 (842)
Q Consensus 671 ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~ 727 (842)
+++. ..|.|.+.++++.|+.+|..+ +...|+.+||..++.
T Consensus 291 I~~y----~~n~Rel~nll~~Aa~~A~~~-------------~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 291 IVKY----ASNGREAVNIVQLAAGIALGE-------------GRKRILAEDIEWVAE 330 (531)
T ss_pred HHHh----hhhHHHHHHHHHHHHHHHhhC-------------CCcEEcHHHHHHHhC
Confidence 7654 337899999999999888654 245799999999886
No 117
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.4e-15 Score=164.04 Aligned_cols=177 Identities=29% Similarity=0.426 Sum_probs=141.5
Q ss_pred ccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003175 485 CLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNER 564 (842)
Q Consensus 485 ~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~ 564 (842)
..++++|+|||||||||.++++|+++.+ ..++.|||..+.. .+-| +....|.+.
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~e~~----------a~~~~i~~peli~----------k~~g------Ete~~LR~~ 269 (693)
T KOG0730|consen 216 KPPRGLLLYGPPGTGKTFLVRAVANEYG----------AFLFLINGPELIS----------KFPG------ETESNLRKA 269 (693)
T ss_pred CCCCCccccCCCCCChHHHHHHHHHHhC----------ceeEecccHHHHH----------hccc------chHHHHHHH
Confidence 3588999999999999999999999987 5588998865332 1112 345667788
Q ss_pred hhcccCCCCCCCCcEEEEEecCcccccCC----------hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc-c
Q 003175 565 FLDGKKIGKEDDRPCILLIDELDLLVTRN----------QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS-R 633 (842)
Q Consensus 565 f~~~~~~~~~~~~~~IlilDEid~L~~~~----------~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s-R 633 (842)
|.++.+. ..|.+|+|||+|.+.+++ ...|+.|+++.. ...+++||+++|+ ++.|++.+++ |
T Consensus 270 f~~a~k~----~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~-~~~~vivl~atnr---p~sld~alRRgR 341 (693)
T KOG0730|consen 270 FAEALKF----QVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK-PDAKVIVLAATNR---PDSLDPALRRGR 341 (693)
T ss_pred HHHHhcc----CCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc-CcCcEEEEEecCC---ccccChhhhcCC
Confidence 8777553 239999999999999753 245888999874 5789999999999 5778888875 9
Q ss_pred CCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH
Q 003175 634 MGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYR 699 (842)
Q Consensus 634 ~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~ 699 (842)
|. +.+.+.-++..++.+||+...+..+..++..++.++..+.++.| |+- .+|+.|...+.++
T Consensus 342 fd-~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~---~l~~ea~~~~~r~ 404 (693)
T KOG0730|consen 342 FD-REVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLA---ALCREASLQATRR 404 (693)
T ss_pred Cc-ceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHH---HHHHHHHHHHhhh
Confidence 98 79999999999999999999988876677888889988888877 553 4788888777665
No 118
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.58 E-value=8.9e-14 Score=144.50 Aligned_cols=132 Identities=26% Similarity=0.372 Sum_probs=103.5
Q ss_pred CCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC---------CCCccccchhhhccCCceeEEecCCCH
Q 003175 576 DRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT---------MDLPEKLLPRISSRMGVQRLCFGPYNH 646 (842)
Q Consensus 576 ~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~---------~dl~~~l~~~l~sR~~~~~i~f~p~~~ 646 (842)
=-|.||||||+|.|.-.....|...++ ..-.+++++ +||+ ..-|..+...+.+|+- .|.-.||+.
T Consensus 290 lVpGVLFIDEvHmLDIE~FsFlnrAlE---se~aPIii~-AtNRG~~kiRGTd~~sPhGIP~DlLDRll--II~t~py~~ 363 (450)
T COG1224 290 LVPGVLFIDEVHMLDIECFSFLNRALE---SELAPIIIL-ATNRGMTKIRGTDIESPHGIPLDLLDRLL--IISTRPYSR 363 (450)
T ss_pred eecceEEEechhhhhHHHHHHHHHHhh---cccCcEEEE-EcCCceeeecccCCcCCCCCCHhhhhhee--EEecCCCCH
Confidence 357899999999996555566666665 234455554 6775 2345667778888885 499999999
Q ss_pred HHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHH
Q 003175 647 QQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAA 725 (842)
Q Consensus 647 ~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A 725 (842)
+++.+||+.|+...+ .++++++++++.+ +..-++|+|++++.-|..+|..+ ++..|..+||+.|
T Consensus 364 ~EireIi~iRa~ee~i~l~~~Ale~L~~i--g~etSLRYa~qLL~pa~iiA~~r-------------g~~~V~~~dVe~a 428 (450)
T COG1224 364 EEIREIIRIRAKEEDIELSDDALEYLTDI--GEETSLRYAVQLLTPASIIAKRR-------------GSKRVEVEDVERA 428 (450)
T ss_pred HHHHHHHHHhhhhhccccCHHHHHHHHhh--chhhhHHHHHHhccHHHHHHHHh-------------CCCeeehhHHHHH
Confidence 999999999998765 7899999998875 34558999999999999999887 4678999999998
Q ss_pred HHH
Q 003175 726 IQE 728 (842)
Q Consensus 726 ~~~ 728 (842)
..-
T Consensus 429 ~~l 431 (450)
T COG1224 429 KEL 431 (450)
T ss_pred HHH
Confidence 653
No 119
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.58 E-value=1.8e-15 Score=144.02 Aligned_cols=100 Identities=21% Similarity=0.299 Sum_probs=85.8
Q ss_pred hhhhhhhhceeeccCCceEEEEEeecCCcccccCCCC---CcccccccccCCccccccchhccceeeeCcccccccccC-
Q 003175 266 DLWAANIQSMWKEVDGNYWCRVFWYMIPEETAAGRQP---HNLRRELYRTNDFANIEMESIIRHCSVMSPKDFVKANDQ- 341 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~g~~~~~~~w~~~peEt~~~~~~---~~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~~~~~- 341 (842)
..|+|+|.+||++.+|..++.|+|||||+||.+.+.. .+.+||||+|.+.|+|++++|++||.|++..+|......
T Consensus 36 ~pyI~~I~~i~~~~~~~~~v~V~WFyRpeEi~~~~~~~~~~~~~~ElF~S~~~d~~~~~~I~gkc~V~~~~~~~~~~~~~ 115 (146)
T cd04713 36 KPYIAIIKDIYKQEEGSLKLEVQWLYRPEEIEKKKGGNWKAEDPRELFYSFHRDEVPAESVLHPCKVAFVPKGKQIPLRK 115 (146)
T ss_pred CCEEEEEEEEEEcCCCCEEEEEEeeECHHHhccccccccccCCCCeEEEeCCCCcCCHHHCcceeEEEECCccccCCccC
Confidence 4689999999999889999999999999999864332 224899999999999999999999999987777743333
Q ss_pred CCCEEEEeeEEecCccceeecccC
Q 003175 342 GDDIFLCEYEYDIHWHSFKRIADI 365 (842)
Q Consensus 342 ~~~~~~C~~~y~~~~~~fk~i~~~ 365 (842)
..++|||++.||...+.|+.+.+-
T Consensus 116 ~~~~F~cr~~yD~~~~~~~~~~~~ 139 (146)
T cd04713 116 GHSGFIVRRVYDNVNKKLWKLTDQ 139 (146)
T ss_pred CCCeEEEEEEEcCCCCcEeecccc
Confidence 678999999999999999987654
No 120
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.57 E-value=4.1e-14 Score=145.58 Aligned_cols=179 Identities=18% Similarity=0.306 Sum_probs=123.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
.+.+||||++|+|||+|++++++++..... ...++|+++..+ ...+...+... ....+.+.+.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-----~~~v~y~~~~~f------~~~~~~~~~~~------~~~~~~~~~~ 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHP-----GKRVVYLSAEEF------IREFADALRDG------EIEEFKDRLR 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCT-----TS-EEEEEHHHH------HHHHHHHHHTT------SHHHHHHHHC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccc-----cccceeecHHHH------HHHHHHHHHcc------cchhhhhhhh
Confidence 467999999999999999999999886532 256899987653 33344443221 1122333332
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCC--hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCc-eeEEecC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRN--QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGV-QRLCFGP 643 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~--~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~-~~i~f~p 643 (842)
..-+|+||++|.+..+. |+.|+.+++.....+.+ +||.....++-...+++++.|||.. ..+.+.+
T Consensus 97 ----------~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~-li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~ 165 (219)
T PF00308_consen 97 ----------SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQ-LILTSDRPPSELSGLLPDLRSRLSWGLVVELQP 165 (219)
T ss_dssp ----------TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSE-EEEEESS-TTTTTTS-HHHHHHHHCSEEEEE--
T ss_pred ----------cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCe-EEEEeCCCCccccccChhhhhhHhhcchhhcCC
Confidence 34699999999998764 78899998865444444 4443434455455678999999965 5788999
Q ss_pred CCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 003175 644 YNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIA 696 (842)
Q Consensus 644 ~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A 696 (842)
++.+++.+||+.++...+ .+++++++++++.+ .+|+|....++.+....+
T Consensus 166 pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~---~~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 166 PDDEDRRRILQKKAKERGIELPEEVIEYLARRF---RRDVRELEGALNRLDAYA 216 (219)
T ss_dssp --HHHHHHHHHHHHHHTT--S-HHHHHHHHHHT---TSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhh---cCCHHHHHHHHHHHHHHh
Confidence 999999999999998665 79999999988764 789998877777766554
No 121
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=99.57 E-value=8.4e-16 Score=142.86 Aligned_cols=96 Identities=31% Similarity=0.634 Sum_probs=84.9
Q ss_pred hhhhhhhhceeeccCCc--eEEEEEeecCCcccccCCCCCcccccccccCCccccccchhccceeeeCcccccccccC--
Q 003175 266 DLWAANIQSMWKEVDGN--YWCRVFWYMIPEETAAGRQPHNLRRELYRTNDFANIEMESIIRHCSVMSPKDFVKANDQ-- 341 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~g~--~~~~~~w~~~peEt~~~~~~~~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~~~~~-- 341 (842)
.+|+|+|.+||++.++. .|+.|+||++|+||. ....+.+||||+|++.+++++++|.|||.|+...+|....+.
T Consensus 19 ~~~v~~I~~i~~~~~~~~~~~~~v~Wf~rp~d~~--~~~~~~~~Elf~s~~~~~~~~~~I~gkc~V~~~~~~~~~~~~~~ 96 (119)
T PF01426_consen 19 PPYVARIEEIWEDKDGNKEKMVKVRWFYRPEDTS--LGKTFSPRELFLSDHCDDIPVESIRGKCNVLHLEDYEQARPYGK 96 (119)
T ss_dssp EEEEEEEEEEEEETTTSEEEEEEEEEEEEGGGST--TGGHSCTTEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTGCCHCH
T ss_pred CCEEEEEEEEEcCCCCCEEEEEEEEEeECccccc--ccccCCCCEEEEECcEeEEehhhEEeeeEEEECCcccccccccc
Confidence 67999999999998887 999999999999993 223334599999999999999999999999999999987766
Q ss_pred -CCCEEEEeeEEecCccceeecc
Q 003175 342 -GDDIFLCEYEYDIHWHSFKRIA 363 (842)
Q Consensus 342 -~~~~~~C~~~y~~~~~~fk~i~ 363 (842)
++++|||++.||...+.|++++
T Consensus 97 ~~~~~F~cr~~yd~~~~~f~~~~ 119 (119)
T PF01426_consen 97 EEPDTFFCRYAYDPQKKRFKKLP 119 (119)
T ss_dssp HTTTEEEEEEEEETTTTEEEE-S
T ss_pred CCCCEEEEEEEEeCCcCEEeCCC
Confidence 5899999999999999998763
No 122
>PRK05642 DNA replication initiation factor; Validated
Probab=99.57 E-value=7.4e-14 Score=145.39 Aligned_cols=185 Identities=10% Similarity=0.158 Sum_probs=130.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
.+.++|+|++|+|||+|++++++++... ...++|+++..+... . ..+.+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~-------~~~v~y~~~~~~~~~------~---------------~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELLDR------G---------------PELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEeeHHHHHhh------h---------------HHHHHhhh
Confidence 4679999999999999999999987642 145788886543321 0 11112221
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCC--hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCc-eeEEecC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRN--QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGV-QRLCFGP 643 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~--~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~-~~i~f~p 643 (842)
..-+|+|||++.+..+. +..|+.+++.... ..+.+||+++..+.....+.+++.|||.. ..+.+.+
T Consensus 97 ----------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~-~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~ 165 (234)
T PRK05642 97 ----------QYELVCLDDLDVIAGKADWEEALFHLFNRLRD-SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRG 165 (234)
T ss_pred ----------hCCEEEEechhhhcCChHHHHHHHHHHHHHHh-cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCC
Confidence 22489999999987643 5779999975433 33556665554444445567899999953 4577999
Q ss_pred CCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHH
Q 003175 644 YNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADV 722 (842)
Q Consensus 644 ~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv 722 (842)
++.+++..|++.++...+ .+++++++++++.+ .||+|.++.++......+... ...||..-+
T Consensus 166 ~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~---~~d~r~l~~~l~~l~~~~l~~--------------~~~it~~~~ 228 (234)
T PRK05642 166 LSDEDKLRALQLRASRRGLHLTDEVGHFILTRG---TRSMSALFDLLERLDQASLQA--------------QRKLTIPFL 228 (234)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHc--------------CCcCCHHHH
Confidence 999999999997776544 68899999988774 899999888888775433322 346888888
Q ss_pred HHHHH
Q 003175 723 EAAIQ 727 (842)
Q Consensus 723 ~~A~~ 727 (842)
++++.
T Consensus 229 ~~~L~ 233 (234)
T PRK05642 229 KETLG 233 (234)
T ss_pred HHHhc
Confidence 87763
No 123
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.56 E-value=6.6e-14 Score=145.62 Aligned_cols=199 Identities=14% Similarity=0.202 Sum_probs=134.9
Q ss_pred cHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHH
Q 003175 465 RNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIY 544 (842)
Q Consensus 465 Re~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~ 544 (842)
.+..++.+..++. .. .+.+++|+|++|||||++++++++.+... ...+++++|..+.... .
T Consensus 22 ~~~~~~~l~~~~~----~~--~~~~lll~G~~G~GKT~la~~~~~~~~~~-------~~~~~~i~~~~~~~~~------~ 82 (226)
T TIGR03420 22 NAELLAALRQLAA----GK--GDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAELAQAD------P 82 (226)
T ss_pred cHHHHHHHHHHHh----cC--CCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEeHHHHHHhH------H
Confidence 3444555555443 22 26789999999999999999999988643 1458899987654210 0
Q ss_pred HHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC--hHHHHHhhcCCCCCCCcEEEEEEeCCC-C
Q 003175 545 EALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN--QSVLYNILDWPTKPNSKLIVIGIANTM-D 621 (842)
Q Consensus 545 ~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~--~~~L~~ll~~~~~~~~~vivI~~tn~~-d 621 (842)
. .+ ..+ ....+|+|||+|.+.... ++.|+.+++.....+. .+|.+++.. .
T Consensus 83 ~--------------~~-~~~----------~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~--~iIits~~~~~ 135 (226)
T TIGR03420 83 E--------------VL-EGL----------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGG--RLLIAGRAAPA 135 (226)
T ss_pred H--------------HH-hhc----------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCC--eEEEECCCChH
Confidence 0 00 111 123589999999998765 7788888864322222 333345432 1
Q ss_pred CccccchhhhccCC-ceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 003175 622 LPEKLLPRISSRMG-VQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYR 699 (842)
Q Consensus 622 l~~~l~~~l~sR~~-~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~ 699 (842)
......+.+.+|+. ...|.++|++.+++..++..++...+ .++++++++++.. ..||+|.+.+++..+...+...
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~---~~gn~r~L~~~l~~~~~~~~~~ 212 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH---GSRDMGSLMALLDALDRASLAA 212 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh---ccCCHHHHHHHHHHHHHHHHHh
Confidence 11222367888874 35799999999999999998776444 6899999988773 6899999999998877655443
Q ss_pred HhhhccCCCcCCcCCCcccHHHHHHHH
Q 003175 700 IKKQTSNKNSASVGKSLVGMADVEAAI 726 (842)
Q Consensus 700 ~~~~~~~~~~~~~~~~~It~~dv~~A~ 726 (842)
...|+.+.+.+++
T Consensus 213 --------------~~~i~~~~~~~~~ 225 (226)
T TIGR03420 213 --------------KRKITIPFVKEVL 225 (226)
T ss_pred --------------CCCCCHHHHHHHh
Confidence 3468888887764
No 124
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=5.3e-14 Score=163.29 Aligned_cols=223 Identities=17% Similarity=0.231 Sum_probs=135.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.|.+.++.++.|..++........ .+..++|+||+|+|||++++.+++.+.....+. .-.++|....+...+
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~-~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew------~npv~~~~~~~~~~~ 156 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENA-PKRILLITGPSGCGKSTTIKILSKELGIQVQEW------SNPTLPDFQKNDHKV 156 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccC-CCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHH------hhhhhhccccccccc
Confidence 5588999999999999987655432 356799999999999999999999987543221 012222222221111
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhccc-CCC-CCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEe
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGK-KIG-KEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIA 617 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~-~~~-~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~t 617 (842)
...+...+... .+..+.+..+........ ..+ ...+...||||||++.+.......++.++.|......++.||+++
T Consensus 157 ~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~ 235 (637)
T TIGR00602 157 TLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFII 235 (637)
T ss_pred chhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEe
Confidence 11111111111 111111111111111100 000 012466899999999988777778888888544445567777777
Q ss_pred CCCC----------Cc-cc-cchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc--c-----C-cHHHHHHHHHHHHH
Q 003175 618 NTMD----------LP-EK-LLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE--A-----F-EKQAIEFASRKVAA 677 (842)
Q Consensus 618 n~~d----------l~-~~-l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~--~-----~-~~~~l~~ia~~~~~ 677 (842)
+.-. +. +. +.+.+.++.....|.|+|++..++...|...+.... . + ++++++.+ +..
T Consensus 236 TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I---~~~ 312 (637)
T TIGR00602 236 TESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELL---CQG 312 (637)
T ss_pred cCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHH---HHh
Confidence 6321 11 11 336888866657899999999997777777775421 1 1 34555554 446
Q ss_pred HhcCHHHHHHHHHHHH
Q 003175 678 ISGDARRALEICRRAA 693 (842)
Q Consensus 678 ~~Gd~R~al~ll~~A~ 693 (842)
..||+|.||+.|+-++
T Consensus 313 s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 313 CSGDIRSAINSLQFSS 328 (637)
T ss_pred CCChHHHHHHHHHHHH
Confidence 7999999999999874
No 125
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.56 E-value=8.3e-14 Score=144.94 Aligned_cols=181 Identities=11% Similarity=0.152 Sum_probs=131.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
..+++|+|++|||||+|++++++++... ...++++++...... + .+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~-------~~~~~~i~~~~~~~~----------~----------------~~~ 88 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYG-------GRNARYLDAASPLLA----------F----------------DFD 88 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEehHHhHHH----------H----------------hhc
Confidence 6789999999999999999999987542 145788887553210 0 000
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCc-eeEEecCCC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGV-QRLCFGPYN 645 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~-~~i~f~p~~ 645 (842)
....+|+|||+|.+....+..|+.+++.... ....++|.+++.......+.+.+.|||.. ..+.++|++
T Consensus 89 ---------~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~-~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~ 158 (227)
T PRK08903 89 ---------PEAELYAVDDVERLDDAQQIALFNLFNRVRA-HGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLS 158 (227)
T ss_pred ---------ccCCEEEEeChhhcCchHHHHHHHHHHHHHH-cCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCC
Confidence 1346899999999987778889999875432 33333444444432222356788899853 689999999
Q ss_pred HHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHH
Q 003175 646 HQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEA 724 (842)
Q Consensus 646 ~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~ 724 (842)
.+++..++.......+ .+++++++++++. ..||+|.+.++++.....|... ...||...+++
T Consensus 159 ~~~~~~~l~~~~~~~~v~l~~~al~~L~~~---~~gn~~~l~~~l~~l~~~~~~~--------------~~~i~~~~~~~ 221 (227)
T PRK08903 159 DADKIAALKAAAAERGLQLADEVPDYLLTH---FRRDMPSLMALLDALDRYSLEQ--------------KRPVTLPLLRE 221 (227)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHh---ccCCHHHHHHHHHHHHHHHHHh--------------CCCCCHHHHHH
Confidence 9999999988765444 6899999998773 6899999999998865555433 36799999998
Q ss_pred HHH
Q 003175 725 AIQ 727 (842)
Q Consensus 725 A~~ 727 (842)
++.
T Consensus 222 ~l~ 224 (227)
T PRK08903 222 MLA 224 (227)
T ss_pred HHh
Confidence 875
No 126
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=6.8e-15 Score=150.09 Aligned_cols=193 Identities=21% Similarity=0.289 Sum_probs=140.8
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
++..++||||||||||.++++|+..+. +.|+.+.+..+.+. . ..+...++++.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg----------~nfl~v~ss~lv~k----------y------iGEsaRlIRemf 218 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMG----------VNFLKVVSSALVDK----------Y------IGESARLIRDMF 218 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcC----------CceEEeeHhhhhhh----------h------cccHHHHHHHHH
Confidence 478999999999999999999999998 56888776554432 1 124557788888
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhhcCC--CCCCCcEEEEEEeCCCCCccccchhhhc
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNILDWP--TKPNSKLIVIGIANTMDLPEKLLPRISS 632 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll~~~--~~~~~~vivI~~tn~~dl~~~l~~~l~s 632 (842)
..+.. ..|||||+||||.+..+. |..|.+|++.. .....+|-+|+++|++ +.|++.|.+
T Consensus 219 ~yA~~-----~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrp---dtLdpaLlR 290 (388)
T KOG0651|consen 219 RYARE-----VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRP---DTLDPALLR 290 (388)
T ss_pred HHHhh-----hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCc---cccchhhcC
Confidence 87754 467999999999988653 34466666533 2345688899999994 667777765
Q ss_pred --cCCceeEEecCCCHHHHHHHHHHHhcCc---ccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCC
Q 003175 633 --RMGVQRLCFGPYNHQQLQEIISSRLKGI---EAFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNK 707 (842)
Q Consensus 633 --R~~~~~i~f~p~~~~e~~~Il~~~l~~~---~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~ 707 (842)
|+. +.+..|.++...+..|++-+...+ +.+++++ +.+.+.+.+|--+ .+.|..|..+|..+.
T Consensus 291 pGRld-rk~~iPlpne~~r~~I~Kih~~~i~~~Geid~ea---ivK~~d~f~gad~--rn~~tEag~Fa~~~~------- 357 (388)
T KOG0651|consen 291 PGRLD-RKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEA---ILKLVDGFNGADL--RNVCTEAGMFAIPEE------- 357 (388)
T ss_pred Ccccc-ceeccCCcchhhceeeEeeccccccccccccHHH---HHHHHhccChHHH--hhhcccccccccchh-------
Confidence 676 678899999999999888777654 4555444 4556666677333 368999998876542
Q ss_pred CcCCcCCCcccHHHHHHHHHHHhh
Q 003175 708 NSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 708 ~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
...+-.+++..++.++..
T Consensus 358 ------~~~vl~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 358 ------RDEVLHEDFMKLVRKQAD 375 (388)
T ss_pred ------hHHHhHHHHHHHHHHHHH
Confidence 456778899888887654
No 127
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.55 E-value=3.2e-13 Score=144.39 Aligned_cols=230 Identities=20% Similarity=0.276 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHH
Q 003175 467 KEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEA 546 (842)
Q Consensus 467 ~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~ 546 (842)
....++...+...+..+ .+.++|+|++|+|||++++.+++.+... .+.++.+... ..+...++..|...
T Consensus 26 ~~~~~~~~~l~~~~~~~---~~~~~l~G~~G~GKTtl~~~l~~~l~~~-------~~~~~~~~~~-~~~~~~~l~~i~~~ 94 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQR---EGFILITGEVGAGKTTLIRNLLKRLDQE-------RVVAAKLVNT-RVDAEDLLRMVAAD 94 (269)
T ss_pred HHHHHHHHHHHHHHhcC---CCEEEEEcCCCCCHHHHHHHHHHhcCCC-------CeEEeeeeCC-CCCHHHHHHHHHHH
Confidence 33444555555555433 4678999999999999999998887631 1222232111 23556777777776
Q ss_pred HhCCCC---CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCc
Q 003175 547 LSGHRV---SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLP 623 (842)
Q Consensus 547 l~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~ 623 (842)
+ |... ........|...+.... ..+++.||+|||+|.+.....+.|..+.+........+.||.++ .+++.
T Consensus 95 l-G~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g-~~~~~ 168 (269)
T TIGR03015 95 F-GLETEGRDKAALLRELEDFLIEQF----AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVG-QPEFR 168 (269)
T ss_pred c-CCCCCCCCHHHHHHHHHHHHHHHH----hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcC-CHHHH
Confidence 6 3321 11222233333332211 12356899999999997655666766666543223334444443 33333
Q ss_pred ccc----chhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-----cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003175 624 EKL----LPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-----AFEKQAIEFASRKVAAISGDARRALEICRRAAE 694 (842)
Q Consensus 624 ~~l----~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-----~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~ 694 (842)
+.+ ...+.+|+. ..+.+++++.+++.+++..++...+ .+++++++.|.+. +.|++|.+..+|..+..
T Consensus 169 ~~l~~~~~~~l~~r~~-~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~---s~G~p~~i~~l~~~~~~ 244 (269)
T TIGR03015 169 ETLQSPQLQQLRQRII-ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRF---SRGIPRLINILCDRLLL 244 (269)
T ss_pred HHHcCchhHHHHhhee-eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH---cCCcccHHHHHHHHHHH
Confidence 332 235677775 5789999999999999999986432 5788888876665 48899998899999988
Q ss_pred HHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHh
Q 003175 695 IADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMF 730 (842)
Q Consensus 695 ~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~ 730 (842)
.|..+ +...|+.++|..++.++.
T Consensus 245 ~a~~~-------------~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 245 SAFLE-------------EKREIGGEEVREVIAEID 267 (269)
T ss_pred HHHHc-------------CCCCCCHHHHHHHHHHhh
Confidence 88765 356899999999998753
No 128
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.55 E-value=1.8e-14 Score=136.13 Aligned_cols=119 Identities=36% Similarity=0.641 Sum_probs=92.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhccc
Q 003175 490 LYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGK 569 (842)
Q Consensus 490 ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~ 569 (842)
|||+||||||||++++.+++.++ ++++++++..+.+. ...+....+...|..+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----------~~~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~ 54 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----------FPFIEIDGSELISS----------------YAGDSEQKIRDFFKKAK 54 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----------SEEEEEETTHHHTS----------------STTHHHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----------cccccccccccccc----------------ccccccccccccccccc
Confidence 68999999999999999999986 67999999876532 11233445555555543
Q ss_pred CCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhh-ccCCce
Q 003175 570 KIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRIS-SRMGVQ 637 (842)
Q Consensus 570 ~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~-sR~~~~ 637 (842)
.. ..++||+|||+|.+.... .+.|+.+++.......+++||+++|. .+.+++.+. +||. .
T Consensus 55 ~~----~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~---~~~i~~~l~~~rf~-~ 126 (132)
T PF00004_consen 55 KS----AKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS---PDKIDPALLRSRFD-R 126 (132)
T ss_dssp HT----STSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS---GGGSCHHHHSTTSE-E
T ss_pred cc----ccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC---hhhCCHhHHhCCCc-E
Confidence 21 147999999999999876 56788888877666678999999998 688899999 9998 5
Q ss_pred eEEec
Q 003175 638 RLCFG 642 (842)
Q Consensus 638 ~i~f~ 642 (842)
+|.|+
T Consensus 127 ~i~~~ 131 (132)
T PF00004_consen 127 RIEFP 131 (132)
T ss_dssp EEEE-
T ss_pred EEEcC
Confidence 77775
No 129
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.54 E-value=1.3e-13 Score=167.36 Aligned_cols=211 Identities=15% Similarity=0.138 Sum_probs=142.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++||+.++.++...|.. . ..++++|+||||||||++++.+++.+....-...+.+..++.++...+..
T Consensus 187 d~~iGr~~ei~~~i~~l~r---~---~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a---- 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLR---R---RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA---- 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhc---C---CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc----
Confidence 4589999998888887754 1 14678999999999999999999998643111112234455555433221
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC----ChHHHHHhhcCCCCCCCcEEEEE
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR----NQSVLYNILDWPTKPNSKLIVIG 615 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~----~~~~L~~ll~~~~~~~~~vivI~ 615 (842)
|.. ...+..+.|...|.+... .+.++||||||+|.|... .+....++|. +....+.+.+||
T Consensus 257 ---------g~~-~~ge~e~~lk~ii~e~~~----~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lk-p~l~~G~l~~Ig 321 (852)
T TIGR03345 257 ---------GAS-VKGEFENRLKSVIDEVKA----SPQPIILFIDEAHTLIGAGGQAGQGDAANLLK-PALARGELRTIA 321 (852)
T ss_pred ---------ccc-cchHHHHHHHHHHHHHHh----cCCCeEEEEeChHHhccCCCccccccHHHHhh-HHhhCCCeEEEE
Confidence 100 112333444555544321 135799999999999852 2222333443 224577899999
Q ss_pred EeCCCCC--ccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc----c-cCcHHHHHHHHHHHHHHhcC---HHHH
Q 003175 616 IANTMDL--PEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI----E-AFEKQAIEFASRKVAAISGD---ARRA 685 (842)
Q Consensus 616 ~tn~~dl--~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~----~-~~~~~~l~~ia~~~~~~~Gd---~R~a 685 (842)
+|+..++ .-.+++.|.+||. .|.|++++.++...||+.....+ + .++++++..++++...+-++ +.+|
T Consensus 322 aTT~~e~~~~~~~d~AL~rRf~--~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKA 399 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTRRFQ--VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKA 399 (852)
T ss_pred ecCHHHHhhhhhccHHHHHhCe--EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHH
Confidence 9986433 2346899999995 69999999999999975554322 2 57899999999988777665 6789
Q ss_pred HHHHHHHHHHHH
Q 003175 686 LEICRRAAEIAD 697 (842)
Q Consensus 686 l~ll~~A~~~A~ 697 (842)
++++..|+....
T Consensus 400 Idlldea~a~~~ 411 (852)
T TIGR03345 400 VSLLDTACARVA 411 (852)
T ss_pred HHHHHHHHHHHH
Confidence 999999876554
No 130
>PRK04132 replication factor C small subunit; Provisional
Probab=99.52 E-value=5.3e-13 Score=158.63 Aligned_cols=171 Identities=24% Similarity=0.258 Sum_probs=128.9
Q ss_pred CCeEEEEc--CCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003175 487 GRCLYIHG--VPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNER 564 (842)
Q Consensus 487 ~~~ili~G--ppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~ 564 (842)
+-.-|+.| |.+.||||+|+++++++..... ...++++|++...+-..+...+.+..
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~-----~~~~lElNASd~rgid~IR~iIk~~a----------------- 621 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENW-----RHNFLELNASDERGINVIREKVKEFA----------------- 621 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccc-----cCeEEEEeCCCcccHHHHHHHHHHHH-----------------
Confidence 33456778 9999999999999999853211 15699999998655433333222211
Q ss_pred hhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCC
Q 003175 565 FLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPY 644 (842)
Q Consensus 565 f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~ 644 (842)
....+. ..+..|+||||+|.|....|+.|+.+++.+ ...+.||+++|. +..+.+.++||| +.+.|+++
T Consensus 622 --~~~~~~--~~~~KVvIIDEaD~Lt~~AQnALLk~lEep---~~~~~FILi~N~---~~kIi~tIrSRC--~~i~F~~l 689 (846)
T PRK04132 622 --RTKPIG--GASFKIIFLDEADALTQDAQQALRRTMEMF---SSNVRFILSCNY---SSKIIEPIQSRC--AIFRFRPL 689 (846)
T ss_pred --hcCCcC--CCCCEEEEEECcccCCHHHHHHHHHHhhCC---CCCeEEEEEeCC---hhhCchHHhhhc--eEEeCCCC
Confidence 111111 124589999999999988899999999854 457788888987 578889999999 46999999
Q ss_pred CHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003175 645 NHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAE 694 (842)
Q Consensus 645 ~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~ 694 (842)
+.+++..+|...+...+ .++++++..+++. +.||+|.|+++++.++.
T Consensus 690 s~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~---s~GDlR~AIn~Lq~~~~ 737 (846)
T PRK04132 690 RDEDIAKRLRYIAENEGLELTEEGLQAILYI---AEGDMRRAINILQAAAA 737 (846)
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 99999999998887554 4678888887765 59999999999987764
No 131
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=6.3e-14 Score=165.54 Aligned_cols=253 Identities=23% Similarity=0.289 Sum_probs=174.3
Q ss_pred CcccccCcccHHHHHHHhccccCC-CCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 435 PEHVRCHKQTELERAKATLLLATL-PKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 435 p~~~~~~~~~~~~~~~~~L~~~~~-p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
...+.|++++++....+.|.+.+. |-..| +++.. -+..+++.+|++||||||||+.+++++..+..
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyP----------E~f~~---~~itpPrgvL~~GppGTGkTl~araLa~~~s~ 325 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYP----------EFFDN---FNITPPRGVLFHGPPGTGKTLMARALAAACSR 325 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhh----------hHhhh---cccCCCcceeecCCCCCchhHHHHhhhhhhcc
Confidence 446778888888888877776553 21111 11211 12224789999999999999999999998875
Q ss_pred HhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC
Q 003175 514 EVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN 593 (842)
Q Consensus 514 ~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~ 593 (842)
.... +.|..-.+....+. -..++.+.|.-.|.++.+ ..|.|||+||||-|+..+
T Consensus 326 ~~~k-----isffmrkgaD~lsk----------------wvgEaERqlrllFeeA~k-----~qPSIIffdeIdGlapvr 379 (1080)
T KOG0732|consen 326 GNRK-----ISFFMRKGADCLSK----------------WVGEAERQLRLLFEEAQK-----TQPSIIFFDEIDGLAPVR 379 (1080)
T ss_pred cccc-----cchhhhcCchhhcc----------------ccCcHHHHHHHHHHHHhc-----cCceEEeccccccccccc
Confidence 3221 22332222222111 123555667777877755 489999999999888754
Q ss_pred ---h--------HHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCc
Q 003175 594 ---Q--------SVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGI 660 (842)
Q Consensus 594 ---~--------~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~ 660 (842)
| ..|+.||+.. ...++|+|||+||++ +.+++.+++ ||. ++++|+.++.+.+.+||.-+-...
T Consensus 380 SskqEqih~SIvSTLLaLmdGl-dsRgqVvvigATnRp---da~dpaLRRPgrfd-ref~f~lp~~~ar~~Il~Ihtrkw 454 (1080)
T KOG0732|consen 380 SSKQEQIHASIVSTLLALMDGL-DSRGQVVVIGATNRP---DAIDPALRRPGRFD-REFYFPLPDVDARAKILDIHTRKW 454 (1080)
T ss_pred cchHHHhhhhHHHHHHHhccCC-CCCCceEEEcccCCc---cccchhhcCCcccc-eeEeeeCCchHHHHHHHHHhccCC
Confidence 2 3577777765 458899999999994 677887754 787 799999999999999999887765
Q ss_pred c-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccC---CCcCCcCCCcccHHHHHHHHHHHhhCh
Q 003175 661 E-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSN---KNSASVGKSLVGMADVEAAIQEMFQAP 733 (842)
Q Consensus 661 ~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~---~~~~~~~~~~It~~dv~~A~~~~~~~~ 733 (842)
. .+....+..+++...++.|-..+ .+|..|+.++.++.-..... ..........|...||..|+..+..+.
T Consensus 455 ~~~i~~~l~~~la~~t~gy~gaDlk--aLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 455 EPPISRELLLWLAEETSGYGGADLK--ALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred CCCCCHHHHHHHHHhccccchHHHH--HHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCC
Confidence 4 67777888888888888883333 48999999987663332211 111222334488999999998887653
No 132
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=6.1e-12 Score=137.89 Aligned_cols=206 Identities=17% Similarity=0.233 Sum_probs=134.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
..|+|.+.....|...+.. +. .++.+||+||+|+|||++++.+++.+.+.......+ ......|... ..
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~----gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~--~~~~~~~~~c----~~ 91 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYRE----GK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAP--ETLADPDPAS----PV 91 (351)
T ss_pred hhccCcHHHHHHHHHHHHc----CC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCc--cccCCCCCCC----HH
Confidence 4477888888777777754 32 467899999999999999999999998632100000 0000111110 11
Q ss_pred HHHHHHH-------H------h-C---CCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhc
Q 003175 540 YRVIYEA-------L------S-G---HRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILD 602 (842)
Q Consensus 540 ~~~i~~~-------l------~-g---~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~ 602 (842)
+..+... + . | ...+.++. ..+.+.|.... ..+...||||||+|.|....++.|+.+++
T Consensus 92 c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~----~~g~~rVviIDeAd~l~~~aanaLLk~LE 166 (351)
T PRK09112 92 WRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTS----GDGNWRIVIIDPADDMNRNAANAILKTLE 166 (351)
T ss_pred HHHHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhcc----ccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence 2222111 0 0 0 01223333 34444444321 23467899999999999888899999998
Q ss_pred CCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCH
Q 003175 603 WPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDA 682 (842)
Q Consensus 603 ~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~ 682 (842)
.+ ..+.+||.+++. +..+++.++||+. .+.|+|++.+++.++|.......+ +++++++.+++. ..|++
T Consensus 167 Ep---p~~~~fiLit~~---~~~llptIrSRc~--~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~~---s~G~p 234 (351)
T PRK09112 167 EP---PARALFILISHS---SGRLLPTIRSRCQ--PISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQR---SKGSV 234 (351)
T ss_pred cC---CCCceEEEEECC---hhhccHHHHhhcc--EEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHHH---cCCCH
Confidence 54 445566666665 4677899999994 699999999999999998543323 667777766544 58999
Q ss_pred HHHHHHHHHHH
Q 003175 683 RRALEICRRAA 693 (842)
Q Consensus 683 R~al~ll~~A~ 693 (842)
|.|++++....
T Consensus 235 r~Al~ll~~~~ 245 (351)
T PRK09112 235 RKALLLLNYGG 245 (351)
T ss_pred HHHHHHHhcCc
Confidence 99999986554
No 133
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.49 E-value=4.2e-13 Score=163.83 Aligned_cols=209 Identities=18% Similarity=0.224 Sum_probs=144.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++||++|++++.+.|... ..++++|+||||||||++|+.++..+........+....++.+++..+..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~a---- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA---- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhc----
Confidence 34899999999999998652 24678999999999999999999998642111122235677777543221
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh----HHHHHhhcCCCCCCCcEEEEE
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ----SVLYNILDWPTKPNSKLIVIG 615 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~----~~L~~ll~~~~~~~~~vivI~ 615 (842)
|... ..+..+.|..+|.+... ..++||||||+|.|..... ..+.++|. +......+.+||
T Consensus 249 ---------g~~~-~ge~e~rl~~i~~~~~~-----~~~~ILfiDEih~l~~~g~~~g~~~~a~lLk-p~l~rg~l~~Ig 312 (821)
T CHL00095 249 ---------GTKY-RGEFEERLKRIFDEIQE-----NNNIILVIDEVHTLIGAGAAEGAIDAANILK-PALARGELQCIG 312 (821)
T ss_pred ---------cCCC-ccHHHHHHHHHHHHHHh-----cCCeEEEEecHHHHhcCCCCCCcccHHHHhH-HHHhCCCcEEEE
Confidence 2111 11233345555544321 2568999999999986431 12333333 223467899999
Q ss_pred EeCCCCCcc--ccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc----c-cCcHHHHHHHHHHHHHHhcC---HHHH
Q 003175 616 IANTMDLPE--KLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI----E-AFEKQAIEFASRKVAAISGD---ARRA 685 (842)
Q Consensus 616 ~tn~~dl~~--~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~----~-~~~~~~l~~ia~~~~~~~Gd---~R~a 685 (842)
+|+..++.. ..++.+.+||. .|.++.++.++...|++...... . .++++++..++.+...+.+| +.+|
T Consensus 313 aTt~~ey~~~ie~D~aL~rRf~--~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdka 390 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALERRFQ--PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKA 390 (821)
T ss_pred eCCHHHHHHHHhcCHHHHhcce--EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHH
Confidence 998644322 35789999995 48999999999999987654321 1 47899999999988888887 8999
Q ss_pred HHHHHHHHHHH
Q 003175 686 LEICRRAAEIA 696 (842)
Q Consensus 686 l~ll~~A~~~A 696 (842)
++++..|+..+
T Consensus 391 idlld~a~a~~ 401 (821)
T CHL00095 391 IDLLDEAGSRV 401 (821)
T ss_pred HHHHHHHHHHH
Confidence 99999888654
No 134
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.49 E-value=4.2e-13 Score=159.74 Aligned_cols=235 Identities=17% Similarity=0.153 Sum_probs=151.2
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHH
Q 003175 461 FLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIY 540 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~ 540 (842)
.++||+++++++.+.|... ...+++|+||||||||++++.++..+... . +++...++..+...
T Consensus 187 ~liGR~~ei~~~i~iL~r~------~~~n~LLvGppGvGKT~lae~la~~i~~~----~---vP~~l~~~~~~~l~---- 249 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQG----D---VPEVMADCTIYSLD---- 249 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHHHhc----C---CCchhcCCeEEecc----
Confidence 4899999999999988762 25678999999999999999999877532 1 22333333322110
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----hHHHHHhhcCCCCCCCcEEEEE
Q 003175 541 RVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----QSVLYNILDWPTKPNSKLIVIG 615 (842)
Q Consensus 541 ~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----~~~L~~ll~~~~~~~~~vivI~ 615 (842)
+...+.|... ..+....+...|..... ..+.||||||+|.|.... +..+.+++.- ......+.+||
T Consensus 250 --~~~llaG~~~-~Ge~e~rl~~l~~~l~~-----~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp-~L~~g~i~vIg 320 (758)
T PRK11034 250 --IGSLLAGTKY-RGDFEKRFKALLKQLEQ-----DTNSILFIDEIHTIIGAGAASGGQVDAANLIKP-LLSSGKIRVIG 320 (758)
T ss_pred --HHHHhcccch-hhhHHHHHHHHHHHHHh-----cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHH-HHhCCCeEEEe
Confidence 0111212110 11222333334332211 246799999999996432 3334444431 12367899999
Q ss_pred EeCCCCCc--cccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc-----ccCcHHHHHHHHHHHHHHhc---CHHHH
Q 003175 616 IANTMDLP--EKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI-----EAFEKQAIEFASRKVAAISG---DARRA 685 (842)
Q Consensus 616 ~tn~~dl~--~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~-----~~~~~~~l~~ia~~~~~~~G---d~R~a 685 (842)
+|+..++. ...++++.+||. .|.+++|+.++...||+.....+ -.+++++++.+..+...+-. -+.+|
T Consensus 321 ATt~~E~~~~~~~D~AL~rRFq--~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKa 398 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRFQ--KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred cCChHHHHHHhhccHHHHhhCc--EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHH
Confidence 99875432 246889999995 59999999999999999776533 25788899887776655433 35689
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhC
Q 003175 686 LEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 686 l~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
+++|..|+....... .......|+.+||.++++...+-
T Consensus 399 idlldea~a~~~~~~---------~~~~~~~v~~~~i~~v~~~~tgi 436 (758)
T PRK11034 399 IDVIDEAGARARLMP---------VSKRKKTVNVADIESVVARIARI 436 (758)
T ss_pred HHHHHHHHHhhccCc---------ccccccccChhhHHHHHHHHhCC
Confidence 999999886542110 00113458889999988877654
No 135
>PRK06620 hypothetical protein; Validated
Probab=99.48 E-value=5.3e-13 Score=136.64 Aligned_cols=167 Identities=15% Similarity=0.210 Sum_probs=115.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhc
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLD 567 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~ 567 (842)
+.+|||||+|+|||+|++++++... . .++..... . .+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~----------~--~~~~~~~~---------------~------------~~~~~- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN----------A--YIIKDIFF---------------N------------EEILE- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC----------C--EEcchhhh---------------c------------hhHHh-
Confidence 6799999999999999998766543 1 12221000 0 00111
Q ss_pred ccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCc-eeEEecCCCH
Q 003175 568 GKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGV-QRLCFGPYNH 646 (842)
Q Consensus 568 ~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~-~~i~f~p~~~ 646 (842)
...+|+|||+|.+ .+..|+.+++.... ..+.+||+++..+... .+ ++++||+.. ..+.+.+++.
T Consensus 85 ---------~~d~lliDdi~~~---~~~~lf~l~N~~~e-~g~~ilits~~~p~~l-~l-~~L~SRl~~gl~~~l~~pd~ 149 (214)
T PRK06620 85 ---------KYNAFIIEDIENW---QEPALLHIFNIINE-KQKYLLLTSSDKSRNF-TL-PDLSSRIKSVLSILLNSPDD 149 (214)
T ss_pred ---------cCCEEEEeccccc---hHHHHHHHHHHHHh-cCCEEEEEcCCCcccc-ch-HHHHHHHhCCceEeeCCCCH
Confidence 2258999999965 33567777765543 3345666555444322 25 899999973 4699999999
Q ss_pred HHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHH
Q 003175 647 QQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAA 725 (842)
Q Consensus 647 ~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A 725 (842)
+++..+++.++...+ .+++++++++++.+ .||+|.+++++......+... ...||.+.++++
T Consensus 150 ~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~---~~d~r~l~~~l~~l~~~~~~~--------------~~~it~~~~~~~ 212 (214)
T PRK06620 150 ELIKILIFKHFSISSVTISRQIIDFLLVNL---PREYSKIIEILENINYFALIS--------------KRKITISLVKEV 212 (214)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHc--------------CCCCCHHHHHHH
Confidence 999999999887554 68999999988775 899999999988854433322 346898888876
Q ss_pred H
Q 003175 726 I 726 (842)
Q Consensus 726 ~ 726 (842)
+
T Consensus 213 l 213 (214)
T PRK06620 213 L 213 (214)
T ss_pred h
Confidence 5
No 136
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=1.4e-12 Score=144.76 Aligned_cols=192 Identities=19% Similarity=0.290 Sum_probs=126.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcC----CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhh---------------cCCC
Q 003175 460 KFLPCRNKEMEDITAFIKGATCD----DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVE---------------SGSI 520 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~----~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~---------------~~~~ 520 (842)
+.++|.+..++.|...+...... +...++++||+||+|+|||++++.+++.+.+... .+..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 45789888888888888763210 1114688999999999999999999998876421 1222
Q ss_pred CCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHh
Q 003175 521 RPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNI 600 (842)
Q Consensus 521 ~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~l 600 (842)
|++.++..++. ..+..+..+.+...... ...+...|+||||+|.|....++.|+.+
T Consensus 85 pD~~~i~~~~~-------------------~i~i~~iR~l~~~~~~~-----p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 85 PDVRVVAPEGL-------------------SIGVDEVRELVTIAARR-----PSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred CCEEEeccccc-------------------cCCHHHHHHHHHHHHhC-----cccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 33333322221 12222322222222111 1224668999999999988888999999
Q ss_pred hcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhc
Q 003175 601 LDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISG 680 (842)
Q Consensus 601 l~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~G 680 (842)
++.+ ....+||.+|++ ++.+++.++||+ +.|.|++++.+++.++|.... .++++....+++. ..|
T Consensus 141 LEep---~~~~~fIL~a~~---~~~llpTIrSRc--~~i~f~~~~~~~i~~~L~~~~----~~~~~~a~~la~~---s~G 205 (394)
T PRK07940 141 VEEP---PPRTVWLLCAPS---PEDVLPTIRSRC--RHVALRTPSVEAVAEVLVRRD----GVDPETARRAARA---SQG 205 (394)
T ss_pred hhcC---CCCCeEEEEECC---hHHChHHHHhhC--eEEECCCCCHHHHHHHHHHhc----CCCHHHHHHHHHH---cCC
Confidence 9854 333444445554 578899999999 469999999999999887543 2455566555544 478
Q ss_pred CHHHHHHHHH
Q 003175 681 DARRALEICR 690 (842)
Q Consensus 681 d~R~al~ll~ 690 (842)
++..|+.++.
T Consensus 206 ~~~~A~~l~~ 215 (394)
T PRK07940 206 HIGRARRLAT 215 (394)
T ss_pred CHHHHHHHhc
Confidence 8888776653
No 137
>PRK09087 hypothetical protein; Validated
Probab=99.47 E-value=6.1e-13 Score=137.37 Aligned_cols=177 Identities=16% Similarity=0.160 Sum_probs=126.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
++.++|+|++|+|||+|++++++... ..|++...+... + +...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~------------~~~i~~~~~~~~------~-----------------~~~~-- 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD------------ALLIHPNEIGSD------A-----------------ANAA-- 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC------------CEEecHHHcchH------H-----------------HHhh--
Confidence 45699999999999999998876542 345554322210 0 0000
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCc-eeEEecCCC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGV-QRLCFGPYN 645 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~-~~i~f~p~~ 645 (842)
...+|+|||+|.+. ..+..|+.+++..... .+.+||+++..+.......++++|||.. ..+.+.+++
T Consensus 87 ----------~~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~-g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd 154 (226)
T PRK09087 87 ----------AEGPVLIEDIDAGG-FDETGLFHLINSVRQA-GTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPD 154 (226)
T ss_pred ----------hcCeEEEECCCCCC-CCHHHHHHHHHHHHhC-CCeEEEECCCChHHhccccccHHHHHhCCceeecCCCC
Confidence 01378899999874 4578899998765433 3455554443333334457889999954 569999999
Q ss_pred HHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHH
Q 003175 646 HQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEA 724 (842)
Q Consensus 646 ~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~ 724 (842)
.+++.+||+.+++..+ .+++++++++++.+ .|+++.++.++.+....+... ...||...+++
T Consensus 155 ~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~---~r~~~~l~~~l~~L~~~~~~~--------------~~~it~~~~~~ 217 (226)
T PRK09087 155 DALLSQVIFKLFADRQLYVDPHVVYYLVSRM---ERSLFAAQTIVDRLDRLALER--------------KSRITRALAAE 217 (226)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHh--------------CCCCCHHHHHH
Confidence 9999999999998665 68999999998876 689998888777766555443 35699999999
Q ss_pred HHHHH
Q 003175 725 AIQEM 729 (842)
Q Consensus 725 A~~~~ 729 (842)
++..+
T Consensus 218 ~l~~~ 222 (226)
T PRK09087 218 VLNEM 222 (226)
T ss_pred HHHhh
Confidence 88754
No 138
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.47 E-value=8.3e-13 Score=133.19 Aligned_cols=170 Identities=22% Similarity=0.301 Sum_probs=114.3
Q ss_pred HHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcC----------------CCCCceEEEEecccCCChHH
Q 003175 475 FIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESG----------------SIRPYCFVEVNGLKLASPEN 538 (842)
Q Consensus 475 ~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~----------------~~~~~~~v~in~~~~~s~~~ 538 (842)
.|...+..+. .++++||+||+|+|||++++.+++.+.+....+ ..+++.++..++..
T Consensus 3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~------ 75 (188)
T TIGR00678 3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQS------ 75 (188)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCc------
Confidence 4445555553 478899999999999999999999987531111 11222222222111
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeC
Q 003175 539 IYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIAN 618 (842)
Q Consensus 539 ~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn 618 (842)
.+.+.....+ +.+... ...+...||||||+|.|....++.|+..++.+ ....+||.+++
T Consensus 76 -------------~~~~~i~~i~-~~~~~~----~~~~~~kviiide~~~l~~~~~~~Ll~~le~~---~~~~~~il~~~ 134 (188)
T TIGR00678 76 -------------IKVDQVRELV-EFLSRT----PQESGRRVVIIEDAERMNEAAANALLKTLEEP---PPNTLFILITP 134 (188)
T ss_pred -------------CCHHHHHHHH-HHHccC----cccCCeEEEEEechhhhCHHHHHHHHHHhcCC---CCCeEEEEEEC
Confidence 1222222222 222211 11246689999999999887788888888754 34566666776
Q ss_pred CCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHH
Q 003175 619 TMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRA 685 (842)
Q Consensus 619 ~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~a 685 (842)
.. ..+.+.++||+. .+.|.|++.+++.++|..+ .++++++++++.. ..||+|+|
T Consensus 135 ~~---~~l~~~i~sr~~--~~~~~~~~~~~~~~~l~~~-----gi~~~~~~~i~~~---~~g~~r~~ 188 (188)
T TIGR00678 135 SP---EKLLPTIRSRCQ--VLPFPPLSEEALLQWLIRQ-----GISEEAAELLLAL---AGGSPGAA 188 (188)
T ss_pred Ch---HhChHHHHhhcE--EeeCCCCCHHHHHHHHHHc-----CCCHHHHHHHHHH---cCCCcccC
Confidence 53 688899999994 6999999999999999887 2678888877665 47888864
No 139
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.47 E-value=1.1e-12 Score=143.64 Aligned_cols=184 Identities=18% Similarity=0.190 Sum_probs=126.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.+.|++...+.+..++.. +. .++.+||+||||+|||++++++++++. ..++++|+.. .....+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~----~~-~~~~lll~G~~G~GKT~la~~l~~~~~----------~~~~~i~~~~-~~~~~i 84 (316)
T PHA02544 21 DECILPAADKETFKSIVKK----GR-IPNMLLHSPSPGTGKTTVAKALCNEVG----------AEVLFVNGSD-CRIDFV 84 (316)
T ss_pred HHhcCcHHHHHHHHHHHhc----CC-CCeEEEeeCcCCCCHHHHHHHHHHHhC----------ccceEeccCc-ccHHHH
Confidence 5588999988888887763 32 356777799999999999999998874 3478888876 221111
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccc-cCChHHHHHhhcCCCCCCCcEEEEEEeC
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLV-TRNQSVLYNILDWPTKPNSKLIVIGIAN 618 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~-~~~~~~L~~ll~~~~~~~~~vivI~~tn 618 (842)
...+.+. .... .. ...+.||||||+|.+. ...++.|..+++.. ...+.||+++|
T Consensus 85 ~~~l~~~---------------~~~~----~~---~~~~~vliiDe~d~l~~~~~~~~L~~~le~~---~~~~~~Ilt~n 139 (316)
T PHA02544 85 RNRLTRF---------------ASTV----SL---TGGGKVIIIDEFDRLGLADAQRHLRSFMEAY---SKNCSFIITAN 139 (316)
T ss_pred HHHHHHH---------------HHhh----cc---cCCCeEEEEECcccccCHHHHHHHHHHHHhc---CCCceEEEEcC
Confidence 1111110 0000 00 1245799999999994 34567888888753 34566777887
Q ss_pred CCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcC-------cc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003175 619 TMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKG-------IE-AFEKQAIEFASRKVAAISGDARRALEICR 690 (842)
Q Consensus 619 ~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~-------~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~ 690 (842)
. ...+.+.++|||. .+.|+.++.+++.+|+...+.. .+ .++++++..+++. ..||.|.+++.+.
T Consensus 140 ~---~~~l~~~l~sR~~--~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~---~~~d~r~~l~~l~ 211 (316)
T PHA02544 140 N---KNGIIEPLRSRCR--VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKK---NFPDFRRTINELQ 211 (316)
T ss_pred C---hhhchHHHHhhce--EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh---cCCCHHHHHHHHH
Confidence 6 3578899999995 5999999999988776654321 12 5677777776554 5789999888777
Q ss_pred HH
Q 003175 691 RA 692 (842)
Q Consensus 691 ~A 692 (842)
..
T Consensus 212 ~~ 213 (316)
T PHA02544 212 RY 213 (316)
T ss_pred HH
Confidence 44
No 140
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5.6e-13 Score=140.26 Aligned_cols=158 Identities=22% Similarity=0.281 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHH
Q 003175 466 NKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYE 545 (842)
Q Consensus 466 e~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~ 545 (842)
+.-+++|...-.+...+. .+-++|+||||||||||..++.++...+ +.+..+.+..+.-
T Consensus 364 e~Rie~lA~aTaNTK~h~-apfRNilfyGPPGTGKTm~ArelAr~SG----------lDYA~mTGGDVAP---------- 422 (630)
T KOG0742|consen 364 EKRIEDLAIATANTKKHQ-APFRNILFYGPPGTGKTMFARELARHSG----------LDYAIMTGGDVAP---------- 422 (630)
T ss_pred HHHHHHHHHHhccccccc-chhhheeeeCCCCCCchHHHHHHHhhcC----------CceehhcCCCccc----------
Confidence 455555555555444433 3578999999999999999999988765 4455554443321
Q ss_pred HHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh---------HHHHHhhcCCCCCCCcEEEEEE
Q 003175 546 ALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ---------SVLYNILDWPTKPNSKLIVIGI 616 (842)
Q Consensus 546 ~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~---------~~L~~ll~~~~~~~~~vivI~~ 616 (842)
-..++...+.++|+-+.+ .++..+|||||+|.+...+. ..|..||=-.......|+++.+
T Consensus 423 -------lG~qaVTkiH~lFDWakk----S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlA 491 (630)
T KOG0742|consen 423 -------LGAQAVTKIHKLFDWAKK----SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLA 491 (630)
T ss_pred -------cchHHHHHHHHHHHHHhh----cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEec
Confidence 124566778888876643 45789999999999886531 2344433212234567888889
Q ss_pred eCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcC
Q 003175 617 ANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKG 659 (842)
Q Consensus 617 tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~ 659 (842)
||+ +..|+..+.+|++ ..|.||.+..+++..+|..++.+
T Consensus 492 tNr---pgdlDsAV~DRid-e~veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 492 TNR---PGDLDSAVNDRID-EVVEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred cCC---ccchhHHHHhhhh-heeecCCCChHHHHHHHHHHHHH
Confidence 998 5888999999999 79999999999999999998864
No 141
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.45 E-value=4.8e-12 Score=148.94 Aligned_cols=246 Identities=22% Similarity=0.278 Sum_probs=153.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC-hHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS-PEN 538 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s-~~~ 538 (842)
+.++|++..+..+...+. .. ...+++|+||+|||||++++.+.+...............|+.++|..+.. ...
T Consensus 154 ~~iiGqs~~~~~l~~~ia----~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVA----SP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHh----cC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 458899999988765552 22 25679999999999999999998876532211001124689999987532 212
Q ss_pred HHHHHHHHHhCCCCC--HHHHHHHHHHHh-hcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC----------
Q 003175 539 IYRVIYEALSGHRVS--WKKALHSLNERF-LDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT---------- 605 (842)
Q Consensus 539 ~~~~i~~~l~g~~~~--~~~~~~~L~~~f-~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~---------- 605 (842)
+ ...+.|.... +..+...+...- .....-.-......+|||||++.|....|..|..+++...
T Consensus 228 i----~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~ 303 (615)
T TIGR02903 228 V----TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDP 303 (615)
T ss_pred H----hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceecc
Confidence 1 1222221100 011111111100 0000000001133599999999998888888888885321
Q ss_pred ---------------CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHH
Q 003175 606 ---------------KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIE 669 (842)
Q Consensus 606 ---------------~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~ 669 (842)
.....+++|++|+. .+..+.+.+++||. .+.|+||+.+++.+|+...+...+ .+++++++
T Consensus 304 ~~~~~~~~ik~~~~~~~~~~~VLI~aTt~--~~~~l~~aLrSR~~--~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~ 379 (615)
T TIGR02903 304 DDPNVPKYIKKLFEEGAPADFVLIGATTR--DPEEINPALRSRCA--EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEE 379 (615)
T ss_pred CCcccchhhhhhcccCccceEEEEEeccc--cccccCHHHHhcee--EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 01234677766544 24567889999995 589999999999999999988655 57888888
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHH
Q 003175 670 FASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQE 728 (842)
Q Consensus 670 ~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~ 728 (842)
.+++. .++.|++++++..+...+..+.... ........|+.+||.+++..
T Consensus 380 ~L~~y----s~~gRraln~L~~~~~~~~~~~~~~-----~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 380 LIARY----TIEGRKAVNILADVYGYALYRAAEA-----GKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHC----CCcHHHHHHHHHHHHHHHHHHHHHh-----ccCCCCeeECHHHHHHHhCC
Confidence 87664 5678999999988876654332100 00112357999999998864
No 142
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.45 E-value=3.5e-14 Score=159.56 Aligned_cols=111 Identities=24% Similarity=0.519 Sum_probs=102.6
Q ss_pred hhhhhhhhceeeccCCceEEEEEeecCCcccccCCCCCcccccccccCCccccccchhccceeeeCcccccccccC---C
Q 003175 266 DLWAANIQSMWKEVDGNYWCRVFWYMIPEETAAGRQPHNLRRELYRTNDFANIEMESIIRHCSVMSPKDFVKANDQ---G 342 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~g~~~~~~~w~~~peEt~~~~~~~~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~~~~~---~ 342 (842)
...+++|+++|+..+|+.|..++||+||++|+|--.+.|+++|||.+..+.+++++.|+|+|.||.+.+|..+.++ .
T Consensus 207 ~p~v~~Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~ 286 (629)
T KOG1827|consen 207 KPIVAQIERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSE 286 (629)
T ss_pred CCceeeecccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccc
Confidence 3458899999999999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred CCEEEEeeEEecCccceeecccCCccchhhccCc
Q 003175 343 DDIFLCEYEYDIHWHSFKRIADIDKEEEVEDADS 376 (842)
Q Consensus 343 ~~~~~C~~~y~~~~~~fk~i~~~~~~~~~e~~~~ 376 (842)
.++|+|+++|+.+-+.|++++.|...+.+|..+.
T Consensus 287 ~dv~lcesRyn~~~K~f~kirsw~~~~p~E~~~~ 320 (629)
T KOG1827|consen 287 EDVFLCESRYNEQLKKFNKIRSWKAFLPREVPLT 320 (629)
T ss_pred cceeeEEeeeccchhhhccccCchhcCccccCCc
Confidence 8999999999999999999999986665555443
No 143
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.45 E-value=4.3e-14 Score=135.34 Aligned_cols=87 Identities=21% Similarity=0.418 Sum_probs=73.4
Q ss_pred hhhhhhhhhceeeccC--CceEEEEEeecCCcccccCCC--CCcccccccccCCc-----cccccchhccceeeeCcccc
Q 003175 265 SDLWAANIQSMWKEVD--GNYWCRVFWYMIPEETAAGRQ--PHNLRRELYRTNDF-----ANIEMESIIRHCSVMSPKDF 335 (842)
Q Consensus 265 ~~~~~~~I~~i~~~~~--g~~~~~~~w~~~peEt~~~~~--~~~~~~Evf~s~~~-----d~~~~~~I~~kc~V~~~~~y 335 (842)
...|||+|.+||++.+ |+++++|+|||||+||+++.. +.+++||||+|.++ ++|++++|+|||.|++.++|
T Consensus 43 ~~~yIgkI~~iwe~~~~~g~~~~~v~WfyRp~E~~~~~~~~~~~~~nEvFlS~~~d~~~~~~n~l~sI~gKC~Vl~~~ey 122 (159)
T cd04715 43 SEPYIGKIIKIYETAIDSGKKKVKVIWFFRPSEIRMELKGEPKRHINEVFLACGRGEGLANINLLESIIGKCNVVCISED 122 (159)
T ss_pred CCCEEEEEEEEEEcCCcCCceEEEEEeeeCHHHhccccccCcccCCCcEEEecCcCccccccCcHHHccceeEEEEehHh
Confidence 3678999999999865 999999999999999986433 56889999999876 66999999999999999999
Q ss_pred cccccC-------CCCEEEEeeE
Q 003175 336 VKANDQ-------GDDIFLCEYE 351 (842)
Q Consensus 336 ~~~~~~-------~~~~~~C~~~ 351 (842)
.+..+. .+.+|+|.+.
T Consensus 123 ~~~~~~s~~~~~~~~~~f~~~f~ 145 (159)
T cd04715 123 FRNPQPSDGIPTSADFLFPCNFD 145 (159)
T ss_pred hhCCCCcCCccccCcceeeeEEE
Confidence 987766 2447777654
No 144
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.44 E-value=7.2e-14 Score=134.15 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=83.3
Q ss_pred hhhhhhhhceeeccCCceEEEEEeecCCcccccC------C--C--------------CCcccccccccCCccccccchh
Q 003175 266 DLWAANIQSMWKEVDGNYWCRVFWYMIPEETAAG------R--Q--------------PHNLRRELYRTNDFANIEMESI 323 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~g~~~~~~~w~~~peEt~~~------~--~--------------~~~~~~Evf~s~~~d~~~~~~I 323 (842)
.++||+|++||+..+|..+++|.|||||+|+... + + ..+..+|||+|.+.|.+|+++|
T Consensus 19 Py~I~rI~e~~~~~~~~~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~rELF~S~~~d~~p~~~I 98 (164)
T cd04709 19 PYLIRRIEELNKTARGHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQLRHRELFLSRQVETLPATHI 98 (164)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhccCcceeEEecccccccHHHe
Confidence 5789999999999999999999999999997431 1 1 1235899999999999999999
Q ss_pred ccceeeeCccccccccc--CCCCEEEEeeEEecCccceeecc
Q 003175 324 IRHCSVMSPKDFVKAND--QGDDIFLCEYEYDIHWHSFKRIA 363 (842)
Q Consensus 324 ~~kc~V~~~~~y~~~~~--~~~~~~~C~~~y~~~~~~fk~i~ 363 (842)
.|||.|+...+|..... ..+|+|||+..||...+.|-.-+
T Consensus 99 rGKC~V~~~~d~~~l~~~~~~~d~Ff~~~~YDP~~k~l~~~~ 140 (164)
T cd04709 99 RGKCSVTLLNDTESARSYLAREDTFFYSLVYDPEQKTLLADQ 140 (164)
T ss_pred eeeEEEEEehhhhhhhhccCCCCEEEEEEEECCCCCeecccc
Confidence 99999999999986532 25899999999999999986543
No 145
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.6e-12 Score=141.83 Aligned_cols=203 Identities=21% Similarity=0.228 Sum_probs=146.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
.++|||+||+|+|||.|++++++++.... .+.+.+++|..+... +.+...+.|...|.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~------~~hv~~v~Cs~l~~~----------------~~e~iQk~l~~vfs 488 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDL------IAHVEIVSCSTLDGS----------------SLEKIQKFLNNVFS 488 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcccc------ceEEEEEechhccch----------------hHHHHHHHHHHHHH
Confidence 57899999999999999999999998432 256788899886543 13344556777777
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCC-----h---------HHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRN-----Q---------SVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS 632 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~-----~---------~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s 632 (842)
++.. ..|.||+||++|.|.... | ..|++++......+..+.||++.+. ...+.+.|.|
T Consensus 489 e~~~-----~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe---~qtl~~~L~s 560 (952)
T KOG0735|consen 489 EALW-----YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQE---LQTLNPLLVS 560 (952)
T ss_pred HHHh-----hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechh---hhhcChhhcC
Confidence 7654 378999999999998732 1 2355555555555777899999887 3556665555
Q ss_pred --cCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 003175 633 --RMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNS 709 (842)
Q Consensus 633 --R~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~ 709 (842)
+|. ..+.++++...++.+||...+++.. ....+.+++++..+.++ +++...-+..+|+..|..+..
T Consensus 561 ~~~Fq-~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy--~~~DL~ifVeRai~~a~leri-------- 629 (952)
T KOG0735|consen 561 PLLFQ-IVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGY--LATDLVIFVERAIHEAFLERI-------- 629 (952)
T ss_pred ccceE-EEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCc--cchhHHHHHHHHHHHHHHHHh--------
Confidence 455 5788999999999999999987532 33445677777766433 455555678899988874421
Q ss_pred CCcCCCcccHHHHHHHHHHHhh
Q 003175 710 ASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 710 ~~~~~~~It~~dv~~A~~~~~~ 731 (842)
..+...+|-++|.+++..+.+
T Consensus 630 -s~~~klltke~f~ksL~~F~P 650 (952)
T KOG0735|consen 630 -SNGPKLLTKELFEKSLKDFVP 650 (952)
T ss_pred -ccCcccchHHHHHHHHHhcCh
Confidence 112348999999999987665
No 146
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.42 E-value=1.5e-12 Score=159.55 Aligned_cols=211 Identities=18% Similarity=0.155 Sum_probs=142.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++||+.++.++.+.|... ..++++|+||||||||++++.++..+.....-..+....++.++...+..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a---- 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIA---- 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhh----
Confidence 34889999999998888651 24678899999999999999999988532111111234566665432211
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC----ChHHHHHhhcCCCCCCCcEEEEE
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR----NQSVLYNILDWPTKPNSKLIVIG 615 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~----~~~~L~~ll~~~~~~~~~vivI~ 615 (842)
|.. ...+....+...|..... ...++||||||+|.|... .+....++|.. ......+.+||
T Consensus 243 ---------~~~-~~g~~e~~l~~~l~~~~~----~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~-~l~~g~i~~Ig 307 (852)
T TIGR03346 243 ---------GAK-YRGEFEERLKAVLNEVTK----SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKP-ALARGELHCIG 307 (852)
T ss_pred ---------cch-hhhhHHHHHHHHHHHHHh----cCCCeEEEeccHHHhhcCCCCcchhHHHHHhch-hhhcCceEEEE
Confidence 100 001222334444443321 135799999999999742 12223455542 24577899999
Q ss_pred EeCCCCCc--cccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-----cCcHHHHHHHHHHHHHHhcC---HHHH
Q 003175 616 IANTMDLP--EKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-----AFEKQAIEFASRKVAAISGD---ARRA 685 (842)
Q Consensus 616 ~tn~~dl~--~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-----~~~~~~l~~ia~~~~~~~Gd---~R~a 685 (842)
+|+..++. -.+++.+.+||. .|.++.++.+++..||+.....+. .+.++++..++.+...+..| +.+|
T Consensus 308 aTt~~e~r~~~~~d~al~rRf~--~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkA 385 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALERRFQ--PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKA 385 (852)
T ss_pred eCcHHHHHHHhhcCHHHHhcCC--EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHH
Confidence 99875432 235899999996 488999999999999987755432 46788898888888777777 8999
Q ss_pred HHHHHHHHHHHH
Q 003175 686 LEICRRAAEIAD 697 (842)
Q Consensus 686 l~ll~~A~~~A~ 697 (842)
++++..|+..+.
T Consensus 386 idlld~a~a~~~ 397 (852)
T TIGR03346 386 IDLIDEAAARIR 397 (852)
T ss_pred HHHHHHHHHHHH
Confidence 999999887553
No 147
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.42 E-value=1.7e-13 Score=127.51 Aligned_cols=95 Identities=19% Similarity=0.133 Sum_probs=83.0
Q ss_pred hhhhhhhhhceeeccCCceEEEEEeecCCcccccCCCCCcccccccccCCccccccc----hhccceeeeCccccccccc
Q 003175 265 SDLWAANIQSMWKEVDGNYWCRVFWYMIPEETAAGRQPHNLRRELYRTNDFANIEME----SIIRHCSVMSPKDFVKAND 340 (842)
Q Consensus 265 ~~~~~~~I~~i~~~~~g~~~~~~~w~~~peEt~~~~~~~~~~~Evf~s~~~d~~~~~----~I~~kc~V~~~~~y~~~~~ 340 (842)
+..++++|+.||++.+|+++++++|||||+||++|. .+.+||||+|++.++++++ .|.+||.|+....+.. .
T Consensus 31 ~~~~i~~V~~~~e~~~g~~~~h~~W~yrp~eTv~g~--~~~~~ElFLSd~c~~~~~~~~~~~I~~k~~V~~~~~~~~--~ 106 (130)
T cd04712 31 WLPLVQFVEYMKKGSDGSKMFHGRWLYRGCDTVLGN--YANERELFLTNECTCLELDLLSTEIKGVHKVDWSGTPWG--K 106 (130)
T ss_pred ccceEEEEEEeeecCCCceEEEEEEEEcchhccccc--cCCCceEEEeccccccccccccceeEEEEEEEEecCcCC--c
Confidence 456799999999999999999999999999999998 7779999999999999999 9999999996655542 1
Q ss_pred CCCCEEEEeeEEecCccceeecc
Q 003175 341 QGDDIFLCEYEYDIHWHSFKRIA 363 (842)
Q Consensus 341 ~~~~~~~C~~~y~~~~~~fk~i~ 363 (842)
..++.|+|...|....+.|..+.
T Consensus 107 ~~~~~F~r~syy~~e~~~F~~l~ 129 (130)
T cd04712 107 GLPEFFVRQSYYWPERGAFTSLK 129 (130)
T ss_pred CCCCEEEEEEEECccCCceEcCC
Confidence 24678899999988999998764
No 148
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=8.7e-13 Score=153.53 Aligned_cols=239 Identities=18% Similarity=0.227 Sum_probs=167.4
Q ss_pred ccccccCcccccCcccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcC---CcccCCeEEEEcCCCChHHHHHH
Q 003175 429 IGRKRIPEHVRCHKQTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCD---DQCLGRCLYIHGVPGTGKTMSVL 505 (842)
Q Consensus 429 ~~~~~~p~~~~~~~~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~---~~~~~~~ili~GppGtGKT~l~~ 505 (842)
-|+.+....+.-.+...+....+.|+ ..++|.+..+..|.+.|+.+..+ +..+.+++||.||+|+|||-|++
T Consensus 465 ~~TgIPv~~l~~~e~~kll~le~~L~-----~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAk 539 (786)
T COG0542 465 RWTGIPVAKLLEDEKEKLLNLERRLK-----KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAK 539 (786)
T ss_pred HHHCCChhhhchhhHHHHHHHHHHHh-----cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHH
Confidence 34443333333345566667777777 56789999999999999987555 33345689999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHhhcccCCCCCCCCcEEEE
Q 003175 506 AVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHR---VSWKKALHSLNERFLDGKKIGKEDDRPCILL 582 (842)
Q Consensus 506 ~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~---~~~~~~~~~L~~~f~~~~~~~~~~~~~~Ili 582 (842)
+++..|.... -.++.+|+++++..+.+-..| |.. ++|.+. ..|.+..+ ++.++||+
T Consensus 540 aLA~~Lfg~e-------~aliR~DMSEy~EkHsVSrLI-----GaPPGYVGyeeG-G~LTEaVR--------r~PySViL 598 (786)
T COG0542 540 ALAEALFGDE-------QALIRIDMSEYMEKHSVSRLI-----GAPPGYVGYEEG-GQLTEAVR--------RKPYSVIL 598 (786)
T ss_pred HHHHHhcCCC-------ccceeechHHHHHHHHHHHHh-----CCCCCCceeccc-cchhHhhh--------cCCCeEEE
Confidence 9999998432 348999999998876665544 433 344442 22333321 23578999
Q ss_pred EecCcccccCChHHHHHhhcCCCCCC--------CcEEEEEEeCCC---------C----------------Cccccchh
Q 003175 583 IDELDLLVTRNQSVLYNILDWPTKPN--------SKLIVIGIANTM---------D----------------LPEKLLPR 629 (842)
Q Consensus 583 lDEid~L~~~~~~~L~~ll~~~~~~~--------~~vivI~~tn~~---------d----------------l~~~l~~~ 629 (842)
||||+.-.+.-.++|+++||...... .+.++|+|||-= + +...+.|.
T Consensus 599 lDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PE 678 (786)
T COG0542 599 LDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPE 678 (786)
T ss_pred echhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHH
Confidence 99999999988999999998654322 246888899841 0 11234567
Q ss_pred hhccCCceeEEecCCCHHHHHHHHHHHhcCc---------c-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003175 630 ISSRMGVQRLCFGPYNHQQLQEIISSRLKGI---------E-AFEKQAIEFASRKVAAISGDARRALEICRRAAE 694 (842)
Q Consensus 630 l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~---------~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~ 694 (842)
+..|+. ..|.|.|++.+.+.+|+...+..+ . .+++++.++++........-+|-+..++++-+.
T Consensus 679 FLNRid-~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~ 752 (786)
T COG0542 679 FLNRID-EIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIE 752 (786)
T ss_pred HHhhcc-cEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHH
Confidence 788887 589999999999999999887643 1 578888888887754434445544444444443
No 149
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.41 E-value=1.3e-11 Score=130.99 Aligned_cols=223 Identities=15% Similarity=0.166 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHH
Q 003175 468 EMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEAL 547 (842)
Q Consensus 468 e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l 547 (842)
.++++.+.+..++.. +.+++|+|+||||||++|+++++.++ .+++.++|....+..+++....
T Consensus 6 ~~~~l~~~~l~~l~~----g~~vLL~G~~GtGKT~lA~~la~~lg----------~~~~~i~~~~~~~~~dllg~~~--- 68 (262)
T TIGR02640 6 AVKRVTSRALRYLKS----GYPVHLRGPAGTGKTTLAMHVARKRD----------RPVMLINGDAELTTSDLVGSYA--- 68 (262)
T ss_pred HHHHHHHHHHHHHhc----CCeEEEEcCCCCCHHHHHHHHHHHhC----------CCEEEEeCCccCCHHHHhhhhc---
Confidence 445555555555543 57799999999999999999998665 4589999987666544432110
Q ss_pred hCCC-CC-HHHHHHH-------HHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC--C----------
Q 003175 548 SGHR-VS-WKKALHS-------LNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT--K---------- 606 (842)
Q Consensus 548 ~g~~-~~-~~~~~~~-------L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~--~---------- 606 (842)
+.. .. ....... ....|... ++..+.....+|+|||++.+....|+.|+.+++... .
T Consensus 69 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i 146 (262)
T TIGR02640 69 -GYTRKKVHDQFIHNVVKLEDIVRQNWVDN-RLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYV 146 (262)
T ss_pred -ccchhhHHHHHHHHhhhhhcccceeecCc-hHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceE
Confidence 000 00 0000000 00000000 000000133699999999998888999999996421 0
Q ss_pred -CCCcEEEEEEeCCCCC--ccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHh--c-
Q 003175 607 -PNSKLIVIGIANTMDL--PEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAIS--G- 680 (842)
Q Consensus 607 -~~~~vivI~~tn~~dl--~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~--G- 680 (842)
.+..+.||+++|..+. ...+...+.+||. .+.++.++.++..+|+..+.. .+++.++.+.+.+.... +
T Consensus 147 ~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~--~i~i~~P~~~~e~~Il~~~~~----~~~~~~~~iv~~~~~~R~~~~ 220 (262)
T TIGR02640 147 DVHPEFRVIFTSNPVEYAGVHETQDALLDRLI--TIFMDYPDIDTETAILRAKTD----VAEDSAATIVRLVREFRASGD 220 (262)
T ss_pred ecCCCCEEEEeeCCccccceecccHHHHhhcE--EEECCCCCHHHHHHHHHHhhC----CCHHHHHHHHHHHHHHHhhCC
Confidence 1236778999997432 2345678999994 588888999999999998863 45556665555543322 1
Q ss_pred ----CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 681 ----DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 681 ----d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
.+|.++.+++.+...+. ...++.+||.++...+..
T Consensus 221 ~~~~~~r~~i~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 221 EITSGLRASLMIAEVATQQDI----------------PVDVDDEDFVDLCIDILA 259 (262)
T ss_pred ccCCcHHHHHHHHHHHHHcCC----------------CCCCCcHHHHHHHHHHhc
Confidence 26777777666665422 456888999887765543
No 150
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=99.38 E-value=2.8e-10 Score=120.16 Aligned_cols=217 Identities=17% Similarity=0.206 Sum_probs=138.5
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChH
Q 003175 458 LPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPE 537 (842)
Q Consensus 458 ~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~ 537 (842)
+-+.++|||.|+..+...+.+.-. ..+.+++|+|..|||||.+++.+.+.++ ...+++||.+..+..
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n----------~~~vw~n~~ecft~~ 70 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLN----------LENVWLNCVECFTYA 70 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcC----------CcceeeehHHhccHH
Confidence 345689999999999998876322 2467789999999999999999999885 558999999999999
Q ss_pred HHHHHHHHHHh-CCCCCH-----HHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCC-c
Q 003175 538 NIYRVIYEALS-GHRVSW-----KKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNS-K 610 (842)
Q Consensus 538 ~~~~~i~~~l~-g~~~~~-----~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~-~ 610 (842)
.++..|...+. ....+. .+....+...|.+... ....+..++||||.+|.|......+|-.+++.....+. .
T Consensus 71 ~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~-~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~ 149 (438)
T KOG2543|consen 71 ILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPA-ATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPT 149 (438)
T ss_pred HHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHH-hhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCc
Confidence 99988888873 211111 1222223333333111 11224689999999999987766666666654332222 3
Q ss_pred EEEEEEeCCCCCccccchhhh---ccCCceeEEecCCCHHHHHHHHHHHhcC-cc-cCcHHHHHHHHHHHHHHhcCHHHH
Q 003175 611 LIVIGIANTMDLPEKLLPRIS---SRMGVQRLCFGPYNHQQLQEIISSRLKG-IE-AFEKQAIEFASRKVAAISGDARRA 685 (842)
Q Consensus 611 vivI~~tn~~dl~~~l~~~l~---sR~~~~~i~f~p~~~~e~~~Il~~~l~~-~~-~~~~~~l~~ia~~~~~~~Gd~R~a 685 (842)
+.+|.+... ...... +-+.+-.++||.|+.+++..|+..--.+ .. .+-...+..+........+|++..
T Consensus 150 i~iils~~~------~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~crd~~eL 223 (438)
T KOG2543|consen 150 IVIILSAPS------CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACRDVNEL 223 (438)
T ss_pred eEEEEeccc------cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 333333221 111222 3444567999999999999999765431 11 111233344444445567788776
Q ss_pred HHHHHHHHH
Q 003175 686 LEICRRAAE 694 (842)
Q Consensus 686 l~ll~~A~~ 694 (842)
..++..++-
T Consensus 224 ~~~~~~~wp 232 (438)
T KOG2543|consen 224 RSLISLAWP 232 (438)
T ss_pred HHHHHHHHH
Confidence 666666554
No 151
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=1.8e-11 Score=134.92 Aligned_cols=197 Identities=16% Similarity=0.186 Sum_probs=128.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcC---------------------
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESG--------------------- 518 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~--------------------- 518 (842)
..++|+++..+.|...+.. +. .++.+||+||+|+||++++..+++.+.+....+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~----~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRS----GR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHc----CC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 3477888887777766654 32 578899999999999999999999998653211
Q ss_pred -----CCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC
Q 003175 519 -----SIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN 593 (842)
Q Consensus 519 -----~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~ 593 (842)
..|++.+++-+...-.. . .......++.. .+.+.+.. ....+.+.||||||+|.+....
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~----------~-~~~~I~VdqiR-~l~~~~~~----~~~~~~~kVviIDead~m~~~a 157 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGK----------R-LRTVITVDEVR-ELISFFGL----TAAEGGWRVVIVDTADEMNANA 157 (365)
T ss_pred HHHccCCCCeEEEecccccccc----------c-ccccccHHHHH-HHHHHhCc----CcccCCCEEEEEechHhcCHHH
Confidence 11111111110000000 0 00112233332 33333322 1234578999999999999888
Q ss_pred hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHH
Q 003175 594 QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASR 673 (842)
Q Consensus 594 ~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~ 673 (842)
++.|+++++.+ ....+||.+|+.+ +.+++.+.||+ +.|.|+|++.+++.++|..... ...+..+..+
T Consensus 158 anaLLK~LEep---p~~~~~IL~t~~~---~~llpti~SRc--~~i~l~~l~~~~i~~~L~~~~~---~~~~~~~~~l-- 224 (365)
T PRK07471 158 ANALLKVLEEP---PARSLFLLVSHAP---ARLLPTIRSRC--RKLRLRPLAPEDVIDALAAAGP---DLPDDPRAAL-- 224 (365)
T ss_pred HHHHHHHHhcC---CCCeEEEEEECCc---hhchHHhhccc--eEEECCCCCHHHHHHHHHHhcc---cCCHHHHHHH--
Confidence 89999999853 4455666677764 56789999999 5699999999999999988753 2333333333
Q ss_pred HHHHHhcCHHHHHHHHHH
Q 003175 674 KVAAISGDARRALEICRR 691 (842)
Q Consensus 674 ~~~~~~Gd~R~al~ll~~ 691 (842)
+....|+++.|+.++..
T Consensus 225 -~~~s~Gsp~~Al~ll~~ 241 (365)
T PRK07471 225 -AALAEGSVGRALRLAGG 241 (365)
T ss_pred -HHHcCCCHHHHHHHhcc
Confidence 33458999999888753
No 152
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.38 E-value=5.4e-12 Score=150.43 Aligned_cols=223 Identities=14% Similarity=0.216 Sum_probs=148.0
Q ss_pred ccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcC---CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC
Q 003175 443 QTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCD---DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS 519 (842)
Q Consensus 443 ~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~---~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~ 519 (842)
...+....+.|. ..++|.++.++.|...+.....+ ...+-.+++|+||||||||.+++.+++.+.
T Consensus 446 ~~~l~~l~~~L~-----~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~------- 513 (758)
T PRK11034 446 RDTLKNLGDRLK-----MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------- 513 (758)
T ss_pred HHHHHHHHHHhc-----ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-------
Confidence 344555555565 56789999999999999876432 111245799999999999999999999885
Q ss_pred CCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHH--HHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHH
Q 003175 520 IRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKK--ALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVL 597 (842)
Q Consensus 520 ~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~--~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L 597 (842)
..++.++|..+...+.+ ..+.|...++.. ....|.+.+.. ....||+|||+|.+...-++.|
T Consensus 514 ---~~~i~id~se~~~~~~~-----~~LiG~~~gyvg~~~~g~L~~~v~~--------~p~sVlllDEieka~~~v~~~L 577 (758)
T PRK11034 514 ---IELLRFDMSEYMERHTV-----SRLIGAPPGYVGFDQGGLLTDAVIK--------HPHAVLLLDEIEKAHPDVFNLL 577 (758)
T ss_pred ---CCcEEeechhhcccccH-----HHHcCCCCCcccccccchHHHHHHh--------CCCcEEEeccHhhhhHHHHHHH
Confidence 35899999887664332 223343222211 11123333221 2458999999999998889999
Q ss_pred HHhhcCCCCC--------CCcEEEEEEeCCC---------CC-------------ccccchhhhccCCceeEEecCCCHH
Q 003175 598 YNILDWPTKP--------NSKLIVIGIANTM---------DL-------------PEKLLPRISSRMGVQRLCFGPYNHQ 647 (842)
Q Consensus 598 ~~ll~~~~~~--------~~~vivI~~tn~~---------dl-------------~~~l~~~l~sR~~~~~i~f~p~~~~ 647 (842)
+++|+..... -.+++||++||.- .+ ...+.|.+..|+. ..|.|+|++.+
T Consensus 578 Lq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid-~ii~f~~L~~~ 656 (758)
T PRK11034 578 LQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLD-NIIWFDHLSTD 656 (758)
T ss_pred HHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCC-EEEEcCCCCHH
Confidence 9999854211 1467899999831 11 1336688889998 68999999999
Q ss_pred HHHHHHHHHhcCc---------c-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003175 648 QLQEIISSRLKGI---------E-AFEKQAIEFASRKVAAISGDARRALEICRRAAE 694 (842)
Q Consensus 648 e~~~Il~~~l~~~---------~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~ 694 (842)
++.+|+...+..+ . .+++.++++++.........+|-.-.++++-+.
T Consensus 657 ~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~ 713 (758)
T PRK11034 657 VIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHH
Confidence 9999998776532 1 578888888776432222234433334444433
No 153
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.38 E-value=4.1e-11 Score=121.55 Aligned_cols=170 Identities=16% Similarity=0.232 Sum_probs=124.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.|.|-|.|.+.|.......+.+.. .+++||+|++|||||++|++++.++.... +++|+|.-..+.+-..+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~p--annvLL~G~rGtGKSSlVkall~~y~~~G-------LRlIev~k~~L~~l~~l 97 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLP--ANNVLLWGARGTGKSSLVKALLNEYADQG-------LRLIEVSKEDLGDLPEL 97 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCC--CcceEEecCCCCCHHHHHHHHHHHHhhcC-------ceEEEECHHHhccHHHH
Confidence 4588999999999999999998874 89999999999999999999999988542 77999987776654333
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC-ChHHHHHhhcCC-CCCCCcEEEEEEe
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR-NQSVLYNILDWP-TKPNSKLIVIGIA 617 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~-~~~~L~~ll~~~-~~~~~~vivI~~t 617 (842)
+..|. ......|||+|++-.=... .-..|..+|+.. .....+|+|.+|+
T Consensus 98 ~~~l~-----------------------------~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 98 LDLLR-----------------------------DRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred HHHHh-----------------------------cCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 22211 1125689999997522221 246788888854 3456789999999
Q ss_pred CCCCCc------------------cccch--hhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHH
Q 003175 618 NTMDLP------------------EKLLP--RISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAI 668 (842)
Q Consensus 618 n~~dl~------------------~~l~~--~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l 668 (842)
|+-.+. +.+.. .|..||+ ..|.|.+++.++..+|+...++..+ .++++.+
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFG-L~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l 219 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFG-LWLSFYPPDQEEYLAIVRHYAERYGLELDEEEL 219 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCC-cEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 973211 11222 4668999 4899999999999999999997655 4443333
No 154
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.36 E-value=2.1e-11 Score=127.52 Aligned_cols=210 Identities=16% Similarity=0.138 Sum_probs=137.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHR---VSWKKALHSLNE 563 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~---~~~~~~~~~L~~ 563 (842)
..|++|+|++|.|||++++.+.+....... .+...++++++.+..-.+...+|..|.+.+.-.. .+..........
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d-~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ 139 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSD-EDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLR 139 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCC-CCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHH
Confidence 478999999999999999999887654332 2333468999999999999999999999985322 222333333334
Q ss_pred HhhcccCCCCCCCCcEEEEEecCcccccC---ChHHHHHhhcCCC-CCCCcEEEEEEeCCCCCccccchhhhccCCceeE
Q 003175 564 RFLDGKKIGKEDDRPCILLIDELDLLVTR---NQSVLYNILDWPT-KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRL 639 (842)
Q Consensus 564 ~f~~~~~~~~~~~~~~IlilDEid~L~~~---~~~~L~~ll~~~~-~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i 639 (842)
.|... +.-+|||||++.+... .|..+++++.... .-...++.||+-...+ .-.-++++.+||.. +
T Consensus 140 llr~~--------~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~-al~~D~QLa~RF~~--~ 208 (302)
T PF05621_consen 140 LLRRL--------GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYR-ALRTDPQLASRFEP--F 208 (302)
T ss_pred HHHHc--------CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHH-HhccCHHHHhccCC--c
Confidence 55433 5689999999998654 3666666666442 2234455555432211 12337899999975 8
Q ss_pred EecCCCHH-HHHHHHHHHhcCcc------cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCc
Q 003175 640 CFGPYNHQ-QLQEIISSRLKGIE------AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASV 712 (842)
Q Consensus 640 ~f~p~~~~-e~~~Il~~~l~~~~------~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~ 712 (842)
.+|++..+ +...+|...-..++ ..+++....+- ..+.|.+-....++..|+..|...
T Consensus 209 ~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~---~~s~G~iG~l~~ll~~aA~~AI~s------------- 272 (302)
T PF05621_consen 209 ELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIH---ERSEGLIGELSRLLNAAAIAAIRS------------- 272 (302)
T ss_pred cCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH---HHcCCchHHHHHHHHHHHHHHHhc-------------
Confidence 88988764 44444444433332 23333334443 344566666667899999988866
Q ss_pred CCCcccHHHHHH
Q 003175 713 GKSLVGMADVEA 724 (842)
Q Consensus 713 ~~~~It~~dv~~ 724 (842)
|...||.+++..
T Consensus 273 G~E~It~~~l~~ 284 (302)
T PF05621_consen 273 GEERITREILDK 284 (302)
T ss_pred CCceecHHHHhh
Confidence 567888888765
No 155
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.4e-13 Score=145.23 Aligned_cols=214 Identities=18% Similarity=0.249 Sum_probs=139.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
-.++|||||||||||.+||.+.+-|+... .--|||.++. +.+.|. ..+.+++.|.
T Consensus 256 VKGiLLyGPPGTGKTLiARqIGkMLNAre---------PKIVNGPeIL----------~KYVGe------SE~NvR~LFa 310 (744)
T KOG0741|consen 256 VKGILLYGPPGTGKTLIARQIGKMLNARE---------PKIVNGPEIL----------NKYVGE------SEENVRKLFA 310 (744)
T ss_pred eeeEEEECCCCCChhHHHHHHHHHhcCCC---------CcccCcHHHH----------HHhhcc------cHHHHHHHHH
Confidence 46899999999999999999999988542 2234655432 223332 2223333333
Q ss_pred ccc---CCCCCCCCcEEEEEecCcccccCC----------hHHHHHh---hcCCCCCCCcEEEEEEeCCCCCccccchhh
Q 003175 567 DGK---KIGKEDDRPCILLIDELDLLVTRN----------QSVLYNI---LDWPTKPNSKLIVIGIANTMDLPEKLLPRI 630 (842)
Q Consensus 567 ~~~---~~~~~~~~~~IlilDEid~L~~~~----------~~~L~~l---l~~~~~~~~~vivI~~tn~~dl~~~l~~~l 630 (842)
++. +..+..+.--|||+||||.+...+ .++..+| +|.. ..-.++.|||.||+.|+ ++.+|
T Consensus 311 DAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGV-eqLNNILVIGMTNR~Dl---IDEAL 386 (744)
T KOG0741|consen 311 DAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGV-EQLNNILVIGMTNRKDL---IDEAL 386 (744)
T ss_pred hHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccH-HhhhcEEEEeccCchhh---HHHHh
Confidence 321 112234456799999999998654 2344444 4433 23457999999999654 45555
Q ss_pred hc--cCCceeEEecCCCHHHHHHHHHHHhcC---cc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhc
Q 003175 631 SS--RMGVQRLCFGPYNHQQLQEIISSRLKG---IE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQT 704 (842)
Q Consensus 631 ~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~---~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~ 704 (842)
++ ||. -.+.+..++...+.+||+-+... .+ .-.+..++.+|..+.+++|.--. -+++.|...|..+..+..
T Consensus 387 LRPGRlE-VqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEle--glVksA~S~A~nR~vk~~ 463 (744)
T KOG0741|consen 387 LRPGRLE-VQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELE--GLVKSAQSFAMNRHVKAG 463 (744)
T ss_pred cCCCceE-EEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHH--HHHHHHHHHHHHhhhccC
Confidence 54 776 36778888998888888766543 33 33445678889899888986544 378888888877754433
Q ss_pred --cCCCcCCcCCCcccHHHHHHHHHHHhhC
Q 003175 705 --SNKNSASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 705 --~~~~~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
...+......-.|+.+||..|+.++.+.
T Consensus 464 ~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA 493 (744)
T KOG0741|consen 464 GKVEVDPVAIENLKVTRGDFLNALEDVKPA 493 (744)
T ss_pred cceecCchhhhheeecHHHHHHHHHhcCcc
Confidence 1122223345679999999999987543
No 156
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.36 E-value=7.3e-12 Score=151.32 Aligned_cols=231 Identities=16% Similarity=0.260 Sum_probs=153.6
Q ss_pred ccccCcccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcC---CcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 437 HVRCHKQTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCD---DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 437 ~~~~~~~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~---~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
.+.+.....+...++.|. ..+.|.+..++.|...+.....+ ...+..+++|+||+|||||.+++.+++.+.
T Consensus 436 ~~~~~~~~~l~~l~~~l~-----~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~- 509 (731)
T TIGR02639 436 TVSVDDREKLKNLEKNLK-----AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG- 509 (731)
T ss_pred hhhhHHHHHHHHHHHHHh-----cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-
Confidence 344555667777777777 45779999999999998865322 222345689999999999999999999885
Q ss_pred HhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC
Q 003175 514 EVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN 593 (842)
Q Consensus 514 ~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~ 593 (842)
..++.+++..+.+.+.+...+... .| .+++... ..|.+.+.. ....||||||+|.+....
T Consensus 510 ---------~~~~~~d~se~~~~~~~~~lig~~-~g-yvg~~~~-~~l~~~~~~--------~p~~VvllDEieka~~~~ 569 (731)
T TIGR02639 510 ---------VHLERFDMSEYMEKHTVSRLIGAP-PG-YVGFEQG-GLLTEAVRK--------HPHCVLLLDEIEKAHPDI 569 (731)
T ss_pred ---------CCeEEEeCchhhhcccHHHHhcCC-CC-Ccccchh-hHHHHHHHh--------CCCeEEEEechhhcCHHH
Confidence 348999988876654333332111 01 1222221 223333321 255899999999999888
Q ss_pred hHHHHHhhcCCCCC--------CCcEEEEEEeCCC---------C-------------CccccchhhhccCCceeEEecC
Q 003175 594 QSVLYNILDWPTKP--------NSKLIVIGIANTM---------D-------------LPEKLLPRISSRMGVQRLCFGP 643 (842)
Q Consensus 594 ~~~L~~ll~~~~~~--------~~~vivI~~tn~~---------d-------------l~~~l~~~l~sR~~~~~i~f~p 643 (842)
++.|+++|+..... -.+.+||++||.- + +...+.|.+.+|+. ..|.|.|
T Consensus 570 ~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid-~Vi~F~p 648 (731)
T TIGR02639 570 YNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLD-AIIHFNP 648 (731)
T ss_pred HHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCC-eEEEcCC
Confidence 99999999854211 2357788888752 0 01235678889998 6899999
Q ss_pred CCHHHHHHHHHHHhcCc----------ccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003175 644 YNHQQLQEIISSRLKGI----------EAFEKQAIEFASRKVAAISGDARRALEICRRAAE 694 (842)
Q Consensus 644 ~~~~e~~~Il~~~l~~~----------~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~ 694 (842)
++.+++.+|+...+... -.+++++++++++......-.+|..-.++++.+.
T Consensus 649 Ls~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~ 709 (731)
T TIGR02639 649 LSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIK 709 (731)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhH
Confidence 99999999999887632 1567888888777532222234444344444443
No 157
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.36 E-value=1.1e-11 Score=131.68 Aligned_cols=110 Identities=22% Similarity=0.337 Sum_probs=75.7
Q ss_pred CCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCC-------C--CccccchhhhccCCceeEEecCCCH
Q 003175 576 DRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTM-------D--LPEKLLPRISSRMGVQRLCFGPYNH 646 (842)
Q Consensus 576 ~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~-------d--l~~~l~~~l~sR~~~~~i~f~p~~~ 646 (842)
=-|.||||||+|.|.-.....|...++. +-++++++ +||+- | .+..+...+++|+- .|...||+.
T Consensus 277 lvpGVLFIDEvHmLDiEcFsfLnralEs---~~sPiiIl-ATNRg~~~irGt~~~sphGiP~DlLDRll--II~t~py~~ 350 (398)
T PF06068_consen 277 LVPGVLFIDEVHMLDIECFSFLNRALES---ELSPIIIL-ATNRGITKIRGTDIISPHGIPLDLLDRLL--IIRTKPYSE 350 (398)
T ss_dssp EEE-EEEEESGGGSBHHHHHHHHHHHTS---TT--EEEE-EES-SEEE-BTTS-EEETT--HHHHTTEE--EEEE----H
T ss_pred EecceEEecchhhccHHHHHHHHHHhcC---CCCcEEEE-ecCceeeeccCccCcCCCCCCcchHhhcE--EEECCCCCH
Confidence 3578999999999977667778888773 34566555 67752 2 34556668889984 599999999
Q ss_pred HHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 003175 647 QQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAA 693 (842)
Q Consensus 647 ~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~ 693 (842)
+++.+||.-|++..+ .+++++++++.++. ....+|+|++++.-|.
T Consensus 351 ~ei~~Il~iR~~~E~v~i~~~al~~L~~ig--~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 351 EEIKQILKIRAKEEDVEISEDALDLLTKIG--VETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHHHHHHHHHCT--B-HHHHHHHHHHH--HHS-HHHHHHCHHHHH
T ss_pred HHHHHHHHhhhhhhcCcCCHHHHHHHHHHh--hhccHHHHHHhhhhhh
Confidence 999999999998766 78999999998763 4668999999887664
No 158
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.35 E-value=5.7e-12 Score=153.11 Aligned_cols=229 Identities=16% Similarity=0.222 Sum_probs=156.5
Q ss_pred CcccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcC---CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhc
Q 003175 441 HKQTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCD---DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVES 517 (842)
Q Consensus 441 ~~~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~---~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~ 517 (842)
.....+....+.|+ ..++|.+..++.|.+.+..+..+ +..+-..++|+||+|||||.++++++..|....
T Consensus 552 ~e~~~l~~l~~~L~-----~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~-- 624 (852)
T TIGR03345 552 DEIEAVLSLPDRLA-----ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE-- 624 (852)
T ss_pred hHHHHHHHHHHHhc-----CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC--
Confidence 34445566666666 56789999999999999876332 222234689999999999999999999986321
Q ss_pred CCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCC---HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh
Q 003175 518 GSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVS---WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ 594 (842)
Q Consensus 518 ~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~---~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~ 594 (842)
-.++.+++..+...+.+... .|...+ +.+. ..|.+.+.. ..+.||+||||+.+....+
T Consensus 625 -----~~~~~~dmse~~~~~~~~~l-----~g~~~gyvg~~~~-g~L~~~v~~--------~p~svvllDEieka~~~v~ 685 (852)
T TIGR03345 625 -----QNLITINMSEFQEAHTVSRL-----KGSPPGYVGYGEG-GVLTEAVRR--------KPYSVVLLDEVEKAHPDVL 685 (852)
T ss_pred -----cceEEEeHHHhhhhhhhccc-----cCCCCCccccccc-chHHHHHHh--------CCCcEEEEechhhcCHHHH
Confidence 24889998887655433222 233222 2211 123333322 3568999999999988888
Q ss_pred HHHHHhhcCCCCCC--------CcEEEEEEeCCC---------CC-----------------ccccchhhhccCCceeEE
Q 003175 595 SVLYNILDWPTKPN--------SKLIVIGIANTM---------DL-----------------PEKLLPRISSRMGVQRLC 640 (842)
Q Consensus 595 ~~L~~ll~~~~~~~--------~~vivI~~tn~~---------dl-----------------~~~l~~~l~sR~~~~~i~ 640 (842)
+.|+++++...... .+.+||.+||.- +. ...|.|.+.+|+. .|.
T Consensus 686 ~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~--iI~ 763 (852)
T TIGR03345 686 ELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT--VIP 763 (852)
T ss_pred HHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee--EEE
Confidence 99999997543211 467888898841 10 1235678888985 699
Q ss_pred ecCCCHHHHHHHHHHHhcCc--------c---cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 003175 641 FGPYNHQQLQEIISSRLKGI--------E---AFEKQAIEFASRKVAAISGDARRALEICRRAAEIAD 697 (842)
Q Consensus 641 f~p~~~~e~~~Il~~~l~~~--------~---~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~ 697 (842)
|.|++.+++.+|+...+... + .+++++++++++......-++|.+..+++.-+....
T Consensus 764 F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~l 831 (852)
T TIGR03345 764 YLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPEL 831 (852)
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Confidence 99999999999998876532 2 578999999887643323368887777777665443
No 159
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.35 E-value=5.2e-13 Score=130.98 Aligned_cols=98 Identities=19% Similarity=0.342 Sum_probs=83.8
Q ss_pred hhhhhhhhceeeccCC------ceEEEEEeecCCcccccCCCCCcccccccccCCccccccchhccceeeeCcccccccc
Q 003175 266 DLWAANIQSMWKEVDG------NYWCRVFWYMIPEETAAGRQPHNLRRELYRTNDFANIEMESIIRHCSVMSPKDFVKAN 339 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~g------~~~~~~~w~~~peEt~~~~~~~~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~~~ 339 (842)
.++||+|-+|+..+++ ...++|+||||||+|.....-+.-.+|||.|++.+++++++|.|||.|+...++....
T Consensus 41 p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwFYRPEdt~~~~~y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~~~ 120 (202)
T cd04708 41 AFVVCQVLEIVVEKESKQADVASTQVKVRRFYRPEDVSPEKAYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDSD 120 (202)
T ss_pred CcEEEEEEEEEecccCCCCCCcceEEEEEEEechhhcCcccceecCceeEEEeccceeechhHcceEEEEEecCcchhhh
Confidence 6789999999986655 6799999999999986533333358999999999999999999999999999888665
Q ss_pred c--CCCCEEEEeeEEecCccceeecc
Q 003175 340 D--QGDDIFLCEYEYDIHWHSFKRIA 363 (842)
Q Consensus 340 ~--~~~~~~~C~~~y~~~~~~fk~i~ 363 (842)
. ..+|+|||++.||...+.|+.+.
T Consensus 121 ~~~~~~~~Ffc~~~Yd~~tg~f~~lP 146 (202)
T cd04708 121 APVIFEHVFFCELLYDPAKGSLKQLP 146 (202)
T ss_pred ccccCCCceEEEEEEcCCCCccCCCC
Confidence 4 46999999999999999998654
No 160
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=4.8e-10 Score=121.38 Aligned_cols=209 Identities=18% Similarity=0.212 Sum_probs=132.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhh----------cCCCCCceEEEEe
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVE----------SGSIRPYCFVEVN 529 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~----------~~~~~~~~~v~in 529 (842)
..++|.+...+.+...+.. +. .++++||+||.|+||++++.++++.+.+... .+..|++.+++-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~----~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQ----NR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHh----CC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 4577888888877777755 32 4789999999999999999999999876531 2334443333221
Q ss_pred ----cccCCChHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCC
Q 003175 530 ----GLKLASPENIYRVIYEALS-GHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWP 604 (842)
Q Consensus 530 ----~~~~~s~~~~~~~i~~~l~-g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~ 604 (842)
+... +.. ........-. ......++.. .+.+.+... ...+...|+|||++|.|....++.|+.+++.+
T Consensus 79 ~~~~g~~~-~~~-~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~----p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP 151 (314)
T PRK07399 79 YQHQGKLI-TAS-EAEEAGLKRKAPPQIRLEQIR-EIKRFLSRP----PLEAPRKVVVIEDAETMNEAAANALLKTLEEP 151 (314)
T ss_pred cccccccc-chh-hhhhccccccccccCcHHHHH-HHHHHHccC----cccCCceEEEEEchhhcCHHHHHHHHHHHhCC
Confidence 1111 100 0000000000 0011222332 233333221 12346789999999999988899999999865
Q ss_pred CCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHH
Q 003175 605 TKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 605 ~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
. +.+||.+++. ++.+++.++||+ +.+.|++++.+++.++|....... ..+ ..+.. .+....|+++.
T Consensus 152 p----~~~fILi~~~---~~~Ll~TI~SRc--q~i~f~~l~~~~~~~~L~~~~~~~-~~~-~~~~~---l~~~a~Gs~~~ 217 (314)
T PRK07399 152 G----NGTLILIAPS---PESLLPTIVSRC--QIIPFYRLSDEQLEQVLKRLGDEE-ILN-INFPE---LLALAQGSPGA 217 (314)
T ss_pred C----CCeEEEEECC---hHhCcHHHHhhc--eEEecCCCCHHHHHHHHHHhhccc-cch-hHHHH---HHHHcCCCHHH
Confidence 3 3355667765 489999999999 469999999999999999875321 111 11223 34456899999
Q ss_pred HHHHHHHHHH
Q 003175 685 ALEICRRAAE 694 (842)
Q Consensus 685 al~ll~~A~~ 694 (842)
|++++.....
T Consensus 218 al~~l~~~~~ 227 (314)
T PRK07399 218 AIANIEQLQS 227 (314)
T ss_pred HHHHHHHHHH
Confidence 9988865443
No 161
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.33 E-value=1.3e-11 Score=150.63 Aligned_cols=189 Identities=17% Similarity=0.175 Sum_probs=120.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++||+.++.++.+.|... ..++++|+||||||||++++.++..+....--..+....++.++...+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a---- 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA---- 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh----
Confidence 34889999999998888652 24678999999999999999999988632111111235677766544321
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC----hHHHHHhhcCCCCCCCcEEEEE
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN----QSVLYNILDWPTKPNSKLIVIG 615 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~----~~~L~~ll~~~~~~~~~vivI~ 615 (842)
|.. ...+..+.+...|.+... ...++||||||+|.|.... .....++|. +....+.+.+||
T Consensus 248 ---------g~~-~~g~~e~~lk~~~~~~~~----~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lk-p~l~~g~l~~Ig 312 (857)
T PRK10865 248 ---------GAK-YRGEFEERLKGVLNDLAK----QEGNVILFIDELHTMVGAGKADGAMDAGNMLK-PALARGELHCVG 312 (857)
T ss_pred ---------ccc-hhhhhHHHHHHHHHHHHH----cCCCeEEEEecHHHhccCCCCccchhHHHHhc-chhhcCCCeEEE
Confidence 100 001222334444443211 1367999999999998542 112233333 334577899999
Q ss_pred EeCCCCCc--cccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-----cCcHHHHHHHHHHH
Q 003175 616 IANTMDLP--EKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-----AFEKQAIEFASRKV 675 (842)
Q Consensus 616 ~tn~~dl~--~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-----~~~~~~l~~ia~~~ 675 (842)
+|+..++. -.+++.+.+||. .|.++.++.++...||+....... .+.++++..++.+.
T Consensus 313 aTt~~e~r~~~~~d~al~rRf~--~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls 377 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALERRFQ--KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLS 377 (857)
T ss_pred cCCCHHHHHHhhhcHHHHhhCC--EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHh
Confidence 99875442 246889999996 488888899999999987654321 34555555544443
No 162
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.32 E-value=2.7e-11 Score=135.16 Aligned_cols=212 Identities=18% Similarity=0.249 Sum_probs=126.2
Q ss_pred CCCcHHHHHHHHHHHHHhhcC----------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 462 LPCRNKEMEDITAFIKGATCD----------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~----------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
++|.+..++.|...+...... ......++||+||||||||++++.+++.+. .+|+.+++.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~----------~pf~~id~~ 142 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD----------VPFAIADAT 142 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC----------CCceecchh
Confidence 568888877776665332111 111247899999999999999999998875 568888887
Q ss_pred cCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC--------------ChHHH
Q 003175 532 KLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR--------------NQSVL 597 (842)
Q Consensus 532 ~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~--------------~~~~L 597 (842)
.+.... +.|. +....+...+..... .-....+.||||||||.+... .|+.|
T Consensus 143 ~l~~~g---------yvG~-----d~e~~l~~l~~~~~~-~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~L 207 (412)
T PRK05342 143 TLTEAG---------YVGE-----DVENILLKLLQAADY-DVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQAL 207 (412)
T ss_pred hcccCC---------cccc-----hHHHHHHHHHHhccc-cHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHH
Confidence 755321 0010 001111111111000 001125689999999999764 36789
Q ss_pred HHhhcCCC----------CCCCcEEEEEEeCCC-----------------------CC----------------------
Q 003175 598 YNILDWPT----------KPNSKLIVIGIANTM-----------------------DL---------------------- 622 (842)
Q Consensus 598 ~~ll~~~~----------~~~~~vivI~~tn~~-----------------------dl---------------------- 622 (842)
+++|+... .+...+++|.|+|-+ .+
T Consensus 208 L~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~ 287 (412)
T PRK05342 208 LKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEP 287 (412)
T ss_pred HHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCH
Confidence 99997321 111223444444430 00
Q ss_pred ---cc-ccchhhhccCCceeEEecCCCHHHHHHHHHH----HhcC---------cc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 623 ---PE-KLLPRISSRMGVQRLCFGPYNHQQLQEIISS----RLKG---------IE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 623 ---~~-~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~----~l~~---------~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
.. .|.|.+..|+. ..+.|.+++.+++.+|+.. .+++ .. .++++++++|++.......-+|.
T Consensus 288 ~dL~~~gf~PEflgRld-~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~ 366 (412)
T PRK05342 288 EDLIKFGLIPEFIGRLP-VVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARG 366 (412)
T ss_pred HHHHHHhhhHHHhCCCC-eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCch
Confidence 00 14678888998 5889999999999999983 2221 11 68999999998874322233554
Q ss_pred HHHHHHHHHHHHHHH
Q 003175 685 ALEICRRAAEIADYR 699 (842)
Q Consensus 685 al~ll~~A~~~A~~~ 699 (842)
.-.++.+.+.-...+
T Consensus 367 Lrriie~~l~~~~~~ 381 (412)
T PRK05342 367 LRSILEEILLDVMFE 381 (412)
T ss_pred HHHHHHHHhHHHHHh
Confidence 444555555544433
No 163
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=2.3e-10 Score=125.00 Aligned_cols=189 Identities=12% Similarity=0.178 Sum_probs=126.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++|.+..++.|...+. .+. .++.++|+||+|+|||++++.+++.+.+....+..++ +..+....
T Consensus 4 ~~i~g~~~~~~~l~~~~~----~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D--~~~~~~~~------- 69 (313)
T PRK05564 4 HTIIGHENIKNRIKNSII----KNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVD--IIEFKPIN------- 69 (313)
T ss_pred hhccCcHHHHHHHHHHHH----cCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCC--eEEecccc-------
Confidence 346787777777666654 332 4788899999999999999999999876543333333 33332210
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
|...+.++..+.+...... ...+...|+|||++|.+....++.|+..++.+ ....+||.+++.
T Consensus 70 ---------~~~i~v~~ir~~~~~~~~~-----p~~~~~kv~iI~~ad~m~~~a~naLLK~LEep---p~~t~~il~~~~ 132 (313)
T PRK05564 70 ---------KKSIGVDDIRNIIEEVNKK-----PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP---PKGVFIILLCEN 132 (313)
T ss_pred ---------CCCCCHHHHHHHHHHHhcC-----cccCCceEEEEechhhcCHHHHHHHHHHhcCC---CCCeEEEEEeCC
Confidence 1222333333333322111 11246689999999999888899999999854 455666666655
Q ss_pred CCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003175 620 MDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICR 690 (842)
Q Consensus 620 ~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~ 690 (842)
++.+.+.++||+. .+.|.+++.+++..+|..++. .++++.++.++. ...|+..+|+..+.
T Consensus 133 ---~~~ll~TI~SRc~--~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~l~~---~~~g~~~~a~~~~~ 192 (313)
T PRK05564 133 ---LEQILDTIKSRCQ--IYKLNRLSKEEIEKFISYKYN---DIKEEEKKSAIA---FSDGIPGKVEKFIE 192 (313)
T ss_pred ---hHhCcHHHHhhce--eeeCCCcCHHHHHHHHHHHhc---CCCHHHHHHHHH---HcCCCHHHHHHHhc
Confidence 4689999999994 699999999999999987764 345555554433 34666777765543
No 164
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=5e-11 Score=129.63 Aligned_cols=169 Identities=16% Similarity=0.195 Sum_probs=114.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhc----------------CCCCCceEEEEecccCCChHHHHHHHHHHHhC
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVES----------------GSIRPYCFVEVNGLKLASPENIYRVIYEALSG 549 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~----------------~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g 549 (842)
.++++||+||+|+|||++++.+++.+.+.... +..|+ +..+....- +
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD--~~~i~~~~~---------------~ 83 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD--NFVLEPEEA---------------D 83 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC--EEEEeccCC---------------C
Confidence 57889999999999999999999999875321 12222 222211100 0
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchh
Q 003175 550 HRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPR 629 (842)
Q Consensus 550 ~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~ 629 (842)
...+.++..+.+....... ..+...|+|||++|.|....++.|+++++.+ ...++||.+|+. ++.+++.
T Consensus 84 ~~i~id~iR~l~~~~~~~~-----~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP---p~~~~fiL~t~~---~~~ll~T 152 (328)
T PRK05707 84 KTIKVDQVRELVSFVVQTA-----QLGGRKVVLIEPAEAMNRNAANALLKSLEEP---SGDTVLLLISHQ---PSRLLPT 152 (328)
T ss_pred CCCCHHHHHHHHHHHhhcc-----ccCCCeEEEECChhhCCHHHHHHHHHHHhCC---CCCeEEEEEECC---hhhCcHH
Confidence 1123344444333222211 2235678899999999998899999999854 456777778877 5789999
Q ss_pred hhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003175 630 ISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICR 690 (842)
Q Consensus 630 l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~ 690 (842)
|+||+. .+.|+|++.+++.+.|..... ...++....+++ ...|++..|+.++.
T Consensus 153 I~SRc~--~~~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~---la~Gsp~~A~~l~~ 205 (328)
T PRK05707 153 IKSRCQ--QQACPLPSNEESLQWLQQALP---ESDERERIELLT---LAGGSPLRALQLHE 205 (328)
T ss_pred HHhhce--eeeCCCcCHHHHHHHHHHhcc---cCChHHHHHHHH---HcCCCHHHHHHHHC
Confidence 999995 599999999999999987652 234444444433 34788888877754
No 165
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.31 E-value=9.3e-11 Score=130.62 Aligned_cols=224 Identities=15% Similarity=0.191 Sum_probs=140.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
..++||++.++.+...+.. +.++||.||||||||++|++++..+... -.|.++++.- .++.++
T Consensus 20 ~~i~gre~vI~lll~aala--------g~hVLL~GpPGTGKT~LAraLa~~~~~~--------~~F~~~~~~f-ttp~DL 82 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALS--------GESVFLLGPPGIAKSLIARRLKFAFQNA--------RAFEYLMTRF-STPEEV 82 (498)
T ss_pred hhccCcHHHHHHHHHHHcc--------CCCEEEECCCChhHHHHHHHHHHHhccc--------Ccceeeeeee-cCcHHh
Confidence 5578999999988777754 6889999999999999999999977532 1244444432 123333
Q ss_pred HHHH--HHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC--C------CCC
Q 003175 540 YRVI--YEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT--K------PNS 609 (842)
Q Consensus 540 ~~~i--~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~--~------~~~ 609 (842)
+..+ ...- ....+. .+..+ .+ ...-+||+|||..+..+.|+.|+.+++... . -..
T Consensus 83 fG~l~i~~~~---------~~g~f~-r~~~G-~L----~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~ 147 (498)
T PRK13531 83 FGPLSIQALK---------DEGRYQ-RLTSG-YL----PEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPM 147 (498)
T ss_pred cCcHHHhhhh---------hcCchh-hhcCC-cc----ccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCC
Confidence 3211 1100 000000 01000 00 012399999999999888999999995332 1 112
Q ss_pred cEEEEEEeCCCCCccccchhhhccCCceeEEecCCC-HHHHHHHHHHHhcC----c--------------------ccCc
Q 003175 610 KLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYN-HQQLQEIISSRLKG----I--------------------EAFE 664 (842)
Q Consensus 610 ~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~-~~e~~~Il~~~l~~----~--------------------~~~~ 664 (842)
++++ ++||.+.-...++..+..||. .+|.+++++ .++..+||...... . -.++
T Consensus 148 rfiv-~ATN~LPE~g~~leAL~DRFl-iri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~ 225 (498)
T PRK13531 148 RLLV-TASNELPEADSSLEALYDRML-IRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLP 225 (498)
T ss_pred cEEE-EECCCCcccCCchHHhHhhEE-EEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCC
Confidence 3344 455643112356678889994 689999997 46668888653210 0 1356
Q ss_pred HHHHHHHHHHHHHHh-------cCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 665 KQAIEFASRKVAAIS-------GDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 665 ~~~l~~ia~~~~~~~-------Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
+.++++|.+++.... -+.|..+.+++.|...|... |+..|+++||. .+..+..
T Consensus 226 d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~-------------GR~~V~p~Dv~-ll~~vL~ 285 (498)
T PRK13531 226 DHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFS-------------GRDAIAPIDLI-LLKDCLW 285 (498)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHC-------------CCCCCCHHHHH-HhHHHhc
Confidence 677788877775311 36788888888888877765 57889999999 5554443
No 166
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.30 E-value=7.1e-11 Score=119.66 Aligned_cols=132 Identities=23% Similarity=0.344 Sum_probs=101.8
Q ss_pred CCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC--------CC--CccccchhhhccCCceeEEecCCC
Q 003175 576 DRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT--------MD--LPEKLLPRISSRMGVQRLCFGPYN 645 (842)
Q Consensus 576 ~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~--------~d--l~~~l~~~l~sR~~~~~i~f~p~~ 645 (842)
--|.||||||++.|.-.-..-|+..++.+ -++++ |+++|+ .| -|..+.+.+.+|+- .|...+|+
T Consensus 295 lvPGVLFIDEVhMLDiEcFTyL~kalES~---iaPiv-ifAsNrG~~~irGt~d~~sPhGip~dllDRl~--Iirt~~y~ 368 (456)
T KOG1942|consen 295 LVPGVLFIDEVHMLDIECFTYLHKALESP---IAPIV-IFASNRGMCTIRGTEDILSPHGIPPDLLDRLL--IIRTLPYD 368 (456)
T ss_pred hcCcceEeeehhhhhhHHHHHHHHHhcCC---CCceE-EEecCCcceeecCCcCCCCCCCCCHHHhhhee--EEeeccCC
Confidence 36789999999999765566777777643 34444 446775 12 34567778888985 48899999
Q ss_pred HHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHH
Q 003175 646 HQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEA 724 (842)
Q Consensus 646 ~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~ 724 (842)
.+++.+|+..|++..+ .++++++.+++.. +.+..+|.+++++.-|..+|... +...|..+||.+
T Consensus 369 ~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~--gt~tsLRy~vqLl~p~~~~ak~~-------------g~~~i~v~dvee 433 (456)
T KOG1942|consen 369 EEEIRQIIKIRAQVEGLQVEEEALDLLAEI--GTSTSLRYAVQLLTPASILAKTN-------------GRKEISVEDVEE 433 (456)
T ss_pred HHHHHHHHHHHHhhhcceecHHHHHHHHhh--ccchhHHHHHHhcCHHHHHHHHc-------------CCceeecccHHH
Confidence 9999999999998665 7899999998875 34568999999999888888765 456788999988
Q ss_pred HHHH
Q 003175 725 AIQE 728 (842)
Q Consensus 725 A~~~ 728 (842)
+..-
T Consensus 434 ~~~L 437 (456)
T KOG1942|consen 434 VTEL 437 (456)
T ss_pred HHHH
Confidence 6543
No 167
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=9.3e-12 Score=127.98 Aligned_cols=151 Identities=21% Similarity=0.307 Sum_probs=105.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
.+-+|++||||||||+|.+++++.|.-... +....-..++||+..+.+. +.. +..+.+..+|.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~-~~y~~~~liEinshsLFSK-----WFs-----------ESgKlV~kmF~ 239 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTN-DRYYKGQLIEINSHSLFSK-----WFS-----------ESGKLVAKMFQ 239 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeec-CccccceEEEEehhHHHHH-----HHh-----------hhhhHHHHHHH
Confidence 578999999999999999999999863321 1222245889998765432 111 12223333333
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCC---------------hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhh
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRN---------------QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRIS 631 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~---------------~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~ 631 (842)
....+....+..+.++|||++.|...+ -+.|+..+|... ...+|++++++|- .+.++.++-
T Consensus 240 kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-~~~NvliL~TSNl---~~siD~AfV 315 (423)
T KOG0744|consen 240 KIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-RYPNVLILATSNL---TDSIDVAFV 315 (423)
T ss_pred HHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEeccch---HHHHHHHhh
Confidence 333333445677899999999998643 145666666442 3567888877774 688899999
Q ss_pred ccCCceeEEecCCCHHHHHHHHHHHhcC
Q 003175 632 SRMGVQRLCFGPYNHQQLQEIISSRLKG 659 (842)
Q Consensus 632 sR~~~~~i~f~p~~~~e~~~Il~~~l~~ 659 (842)
+|-++ +.++.||+.+.+++|++.-++.
T Consensus 316 DRADi-~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 316 DRADI-VFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred hHhhh-eeecCCccHHHHHHHHHHHHHH
Confidence 99984 7889999999999999998864
No 168
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.29 E-value=2.2e-12 Score=117.04 Aligned_cols=92 Identities=20% Similarity=0.373 Sum_probs=75.8
Q ss_pred hhhhhhhhceeeccCCceEEEEEeecCCcccccCCCCCcccccccccCCccccccchhccceeeeCcccc----ccc---
Q 003175 266 DLWAANIQSMWKEVDGNYWCRVFWYMIPEETAAGRQPHNLRRELYRTNDFANIEMESIIRHCSVMSPKDF----VKA--- 338 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~g~~~~~~~w~~~peEt~~~~~~~~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y----~~~--- 338 (842)
..++++|+.||++.+|+++++|+||+||+||+.|+. +-++|||+|++.+++++++|.+||.|+....- ..+
T Consensus 20 p~~I~rV~~mfe~~~g~k~~h~rWf~Rg~dTVlG~~--~~~kEvFlsd~c~d~~l~~I~~Kv~V~~~~p~~~w~~~~g~~ 97 (124)
T cd04760 20 PLYIARVTYMWKDSIGGKMFHAHWFCRGSDTVLGET--SDPLELFLVDECEDMALSSIHGKVNVIYKAPSENWSMEGGMD 97 (124)
T ss_pred CcEEEEEhhheecCCCCcEEEEEEEEECCccccccc--CCCcEEEeecccCCcchHHheeeeEEEEeCCCcchhhhcCCC
Confidence 568999999999999999999999999999999975 55899999999999999999999999943321 111
Q ss_pred -----ccCCCCEEEEeeEEecCccce
Q 003175 339 -----NDQGDDIFLCEYEYDIHWHSF 359 (842)
Q Consensus 339 -----~~~~~~~~~C~~~y~~~~~~f 359 (842)
....++.|||.+-|+.....|
T Consensus 98 ~~~~~~~ddg~tffyq~~yd~~~arf 123 (124)
T cd04760 98 EEDEIFEDDGKTFFYQKWYDPECARF 123 (124)
T ss_pred CccccccCCCCeEEEEEeeChhhhcc
Confidence 111467899999999866554
No 169
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=1.1e-10 Score=127.98 Aligned_cols=184 Identities=17% Similarity=0.263 Sum_probs=120.6
Q ss_pred CCC-cHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhh----------------cCCCCCce
Q 003175 462 LPC-RNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVE----------------SGSIRPYC 524 (842)
Q Consensus 462 L~g-Re~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~----------------~~~~~~~~ 524 (842)
+.| .+..++.|. ..+..+. .++.+||+||+|+|||++++.+++.+.+... .+..|++.
T Consensus 7 i~~~q~~~~~~L~----~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~ 81 (329)
T PRK08058 7 LTALQPVVVKMLQ----NSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH 81 (329)
T ss_pred HHhhHHHHHHHHH----HHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE
Confidence 444 444444444 4444443 5788899999999999999999999875431 11233333
Q ss_pred EEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCC
Q 003175 525 FVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWP 604 (842)
Q Consensus 525 ~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~ 604 (842)
++..++ ...+.++..+.+... ... ...+...|+||||+|.+....++.|+..++.+
T Consensus 82 ~i~~~~-------------------~~i~id~ir~l~~~~-~~~----~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP 137 (329)
T PRK08058 82 LVAPDG-------------------QSIKKDQIRYLKEEF-SKS----GVESNKKVYIIEHADKMTASAANSLLKFLEEP 137 (329)
T ss_pred Eecccc-------------------ccCCHHHHHHHHHHH-hhC----CcccCceEEEeehHhhhCHHHHHHHHHHhcCC
Confidence 332221 112233333333322 111 11235689999999999988899999999854
Q ss_pred CCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHH
Q 003175 605 TKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 605 ~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
...++||.+++. +..+.+.++||+. .+.|.+++.+++.++|... .++++...+++ ...|++.+
T Consensus 138 ---p~~~~~Il~t~~---~~~ll~TIrSRc~--~i~~~~~~~~~~~~~L~~~-----gi~~~~~~~l~----~~~g~~~~ 200 (329)
T PRK08058 138 ---SGGTTAILLTEN---KHQILPTILSRCQ--VVEFRPLPPESLIQRLQEE-----GISESLATLLA----GLTNSVEE 200 (329)
T ss_pred ---CCCceEEEEeCC---hHhCcHHHHhhce--eeeCCCCCHHHHHHHHHHc-----CCChHHHHHHH----HHcCCHHH
Confidence 556777777765 5789999999994 5999999999998888753 24444444433 33688888
Q ss_pred HHHHHHH
Q 003175 685 ALEICRR 691 (842)
Q Consensus 685 al~ll~~ 691 (842)
|++++..
T Consensus 201 A~~l~~~ 207 (329)
T PRK08058 201 ALALSED 207 (329)
T ss_pred HHHHhcC
Confidence 8877643
No 170
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.28 E-value=3.6e-11 Score=147.37 Aligned_cols=228 Identities=18% Similarity=0.215 Sum_probs=155.7
Q ss_pred cHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcC---CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCC
Q 003175 444 TELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCD---DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSI 520 (842)
Q Consensus 444 ~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~---~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~ 520 (842)
..+...++.|. ..++|++..++.|...+.....+ +..+..+++|+||+|||||++|++++..+....
T Consensus 554 ~~l~~l~~~l~-----~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~----- 623 (852)
T TIGR03346 554 EKLLHMEEVLH-----ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE----- 623 (852)
T ss_pred HHHHHHHHHhh-----cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC-----
Confidence 34445555554 56889999999999999886533 222346789999999999999999999886431
Q ss_pred CCceEEEEecccCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHH
Q 003175 521 RPYCFVEVNGLKLASPENIYRVIYEALSGHR---VSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVL 597 (842)
Q Consensus 521 ~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~---~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L 597 (842)
..++++++..+.....+.. +.|.. +++.+. ..|.+.+.. ....|||||||+.+....++.|
T Consensus 624 --~~~i~~d~s~~~~~~~~~~-----l~g~~~g~~g~~~~-g~l~~~v~~--------~p~~vlllDeieka~~~v~~~L 687 (852)
T TIGR03346 624 --DAMVRIDMSEYMEKHSVAR-----LIGAPPGYVGYEEG-GQLTEAVRR--------KPYSVVLFDEVEKAHPDVFNVL 687 (852)
T ss_pred --CcEEEEechhhcccchHHH-----hcCCCCCccCcccc-cHHHHHHHc--------CCCcEEEEeccccCCHHHHHHH
Confidence 3589999988766433222 22321 122221 122222221 2347999999999998889999
Q ss_pred HHhhcCCCCC--------CCcEEEEEEeCCC-----C-----------------CccccchhhhccCCceeEEecCCCHH
Q 003175 598 YNILDWPTKP--------NSKLIVIGIANTM-----D-----------------LPEKLLPRISSRMGVQRLCFGPYNHQ 647 (842)
Q Consensus 598 ~~ll~~~~~~--------~~~vivI~~tn~~-----d-----------------l~~~l~~~l~sR~~~~~i~f~p~~~~ 647 (842)
+++|+..... -.+.+||++||.- + +...+.|.+..|+. ..+.|.|++.+
T Consensus 688 l~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid-~IivF~PL~~e 766 (852)
T TIGR03346 688 LQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRID-EIVVFHPLGRE 766 (852)
T ss_pred HHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcC-eEEecCCcCHH
Confidence 9999754211 2356788899861 1 11234567778887 68999999999
Q ss_pred HHHHHHHHHhcCc----------ccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 003175 648 QLQEIISSRLKGI----------EAFEKQAIEFASRKVAAISGDARRALEICRRAAEIADY 698 (842)
Q Consensus 648 e~~~Il~~~l~~~----------~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~ 698 (842)
++.+|+...+..+ -.+++++++++++......+.+|..-.++++.+.....
T Consensus 767 ~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~ 827 (852)
T TIGR03346 767 QIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLA 827 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHH
Confidence 9999998777531 25788999988875433367888877777777765443
No 171
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.28 E-value=1.6e-12 Score=117.78 Aligned_cols=92 Identities=20% Similarity=0.346 Sum_probs=78.9
Q ss_pred hhhhhhhhceeeccCC-------ceEEEEEeecCCcccccCCCC-Cccc-ccccccCCccccccchhccceeee------
Q 003175 266 DLWAANIQSMWKEVDG-------NYWCRVFWYMIPEETAAGRQP-HNLR-RELYRTNDFANIEMESIIRHCSVM------ 330 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~g-------~~~~~~~w~~~peEt~~~~~~-~~~~-~Evf~s~~~d~~~~~~I~~kc~V~------ 330 (842)
.++||||.+|....++ ..+++|+||||||+|..|+.. .+-. ||||.|.+.++.++++|.|||.|.
T Consensus 26 Py~VgrI~eI~~~k~~~~k~~~~~ikvrV~~fYRPEdi~~g~~~ayhsDirevy~Sd~~~~~~~~~I~GKC~V~~~~di~ 105 (137)
T cd04711 26 PFRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRPENTHKGFKATYHADINMLYWSDEEATVDFSAVQGRCTVEYGEDLP 105 (137)
T ss_pred CcEEEEEEEEecCCCCCCCCCccceEEEEEEEecccccccccccccccceeeEEeecceeecChhhccceEEEEeccccc
Confidence 7789999999886444 358999999999999887655 3344 999999999999999999999999
Q ss_pred -CcccccccccCCCCEEEEeeEEecCcccee
Q 003175 331 -SPKDFVKANDQGDDIFLCEYEYDIHWHSFK 360 (842)
Q Consensus 331 -~~~~y~~~~~~~~~~~~C~~~y~~~~~~fk 360 (842)
++++|. ..+.+.|||+..|+...+.|.
T Consensus 106 ~s~~~y~---~~gpd~Fyf~~~Y~a~t~~F~ 133 (137)
T cd04711 106 ESVQEYS---GGGPDRFYFLEAYNAKTKSFE 133 (137)
T ss_pred hhHHHHh---cCCCcceEEhhhhccccCccc
Confidence 777883 357899999999999999995
No 172
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.27 E-value=2.9e-12 Score=126.06 Aligned_cols=95 Identities=21% Similarity=0.351 Sum_probs=81.3
Q ss_pred hhhhhhhhceeeccC-CceEEEEEeecCCcccccCCC-CCcc--------cccccccCCccccccchhccceeeeCcccc
Q 003175 266 DLWAANIQSMWKEVD-GNYWCRVFWYMIPEETAAGRQ-PHNL--------RRELYRTNDFANIEMESIIRHCSVMSPKDF 335 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~-g~~~~~~~w~~~peEt~~~~~-~~~~--------~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y 335 (842)
.+|+|.|.+|+.+.. +..-+.|+||++|.|...++. +.+. +||||+|.++|.+++.+|+++|.||+.++|
T Consensus 68 ~~~V~iI~ei~~~~~~~~v~i~v~Wy~r~~Ei~~~~~~~~~~~~~~~~~~~nElflT~~~d~i~l~~Ii~k~~Vls~~ef 147 (179)
T cd04720 68 SPSVYLIHEIRLNTLNNEVELWVMWFLRWFEINPARYYKQFDPEFRSESNKNELYLTAELSEIKLKDIIDKANVLSESEF 147 (179)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEEcCCHHHcccccccccccchhcccCCCceEEEecccceEEhhheeeeEEEecHHHh
Confidence 467888999998765 456899999999999866543 1222 799999999999999999999999999999
Q ss_pred cccccC---CCCEEEEeeEEecCcccee
Q 003175 336 VKANDQ---GDDIFLCEYEYDIHWHSFK 360 (842)
Q Consensus 336 ~~~~~~---~~~~~~C~~~y~~~~~~fk 360 (842)
....+. ++.+|||++.||.....|.
T Consensus 148 ~~~~~~~~~~~~~F~cR~~~d~~~~~F~ 175 (179)
T cd04720 148 NDLSTDDKNGERTFFCRYACEPDGEEFV 175 (179)
T ss_pred hhhcccccCCCceEEEEEEEeCCCCeEc
Confidence 988766 6899999999999888875
No 173
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.1e-10 Score=127.20 Aligned_cols=180 Identities=17% Similarity=0.202 Sum_probs=122.7
Q ss_pred HHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhh----------------cCCCCCceEEEEecccCCChH
Q 003175 474 AFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVE----------------SGSIRPYCFVEVNGLKLASPE 537 (842)
Q Consensus 474 ~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~----------------~~~~~~~~~v~in~~~~~s~~ 537 (842)
+.|...+..+. .++++||+||+|+||++++.++++.+.+... .+..|++.++.-...
T Consensus 12 ~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~------ 84 (334)
T PRK07993 12 EQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG------ 84 (334)
T ss_pred HHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc------
Confidence 33444444443 5789999999999999999999999976422 233444433322110
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEe
Q 003175 538 NIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIA 617 (842)
Q Consensus 538 ~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~t 617 (842)
+...+.++..+......... ..+...|+|||++|.|....++.|+++++.+ ..+.+||.+|
T Consensus 85 -----------~~~I~idqiR~l~~~~~~~~-----~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP---p~~t~fiL~t 145 (334)
T PRK07993 85 -----------KSSLGVDAVREVTEKLYEHA-----RLGGAKVVWLPDAALLTDAAANALLKTLEEP---PENTWFFLAC 145 (334)
T ss_pred -----------cccCCHHHHHHHHHHHhhcc-----ccCCceEEEEcchHhhCHHHHHHHHHHhcCC---CCCeEEEEEE
Confidence 01123444444333332221 2346789999999999998999999999854 5677777788
Q ss_pred CCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 003175 618 NTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICRR 691 (842)
Q Consensus 618 n~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~ 691 (842)
+. ++.+++.|+||+. .+.|++++.+++.+.|.... .++++....+++. ..|++.+|++++..
T Consensus 146 ~~---~~~lLpTIrSRCq--~~~~~~~~~~~~~~~L~~~~----~~~~~~a~~~~~l---a~G~~~~Al~l~~~ 207 (334)
T PRK07993 146 RE---PARLLATLRSRCR--LHYLAPPPEQYALTWLSREV----TMSQDALLAALRL---SAGAPGAALALLQP 207 (334)
T ss_pred CC---hhhChHHHHhccc--cccCCCCCHHHHHHHHHHcc----CCCHHHHHHHHHH---cCCCHHHHHHHhcC
Confidence 76 5899999999995 59999999999999887643 2444444443333 57889888877643
No 174
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.26 E-value=8.4e-11 Score=121.47 Aligned_cols=246 Identities=20% Similarity=0.176 Sum_probs=146.6
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHH
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYR 541 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~ 541 (842)
+++.++-+..+..+ ...+. -.++|+|||||||||+++.+.++.+.+... +...+.++|++.-........
T Consensus 43 v~~~~ei~st~~~~----~~~~~--lPh~L~YgPPGtGktsti~a~a~~ly~~~~----~~~m~lelnaSd~rgid~vr~ 112 (360)
T KOG0990|consen 43 VIKQEPIWSTENRY----SGMPG--LPHLLFYGPPGTGKTSTILANARDFYSPHP----TTSMLLELNASDDRGIDPVRQ 112 (360)
T ss_pred HhcCCchhhHHHHh----ccCCC--CCcccccCCCCCCCCCchhhhhhhhcCCCC----chhHHHHhhccCccCCcchHH
Confidence 44555555555555 22333 348999999999999999999999874210 001133334333222211111
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCC
Q 003175 542 VIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMD 621 (842)
Q Consensus 542 ~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~d 621 (842)
.+. ...+............+.++||||+|.+....|+.|....+-.+ .++.|+.++|.
T Consensus 113 qi~-----------------~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t---~n~rF~ii~n~-- 170 (360)
T KOG0990|consen 113 QIH-----------------LFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYT---ANTRFATISNP-- 170 (360)
T ss_pred HHH-----------------HHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhc---cceEEEEeccC--
Confidence 111 01111111111122367899999999999999999999877442 33444445665
Q ss_pred CccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 003175 622 LPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRI 700 (842)
Q Consensus 622 l~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~ 700 (842)
+..+.+.+.|||. ++.|.|++..+...++.+..+... ...++....++ ..+.||+|.|++.++..........
T Consensus 171 -~~ki~pa~qsRct--rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~---r~s~gDmr~a~n~Lqs~~~~~~~~~ 244 (360)
T KOG0990|consen 171 -PQKIHPAQQSRCT--RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALG---RLSVGDMRVALNYLQSILKKVMERK 244 (360)
T ss_pred -hhhcCchhhcccc--cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHH---HHhHHHHHHHHHHHHHHHHHhCCCC
Confidence 5788899999995 599999999999999999887543 45555554433 4468999999999987665432110
Q ss_pred hhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHH
Q 003175 701 KKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSK 746 (842)
Q Consensus 701 ~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~k 746 (842)
......+......+.+...|+++.+..+...........++...+
T Consensus 245 -e~~~~~~~vy~c~g~p~~~dI~~I~~~il~~~~~~~~~~is~lk~ 289 (360)
T KOG0990|consen 245 -ELNNPNDLVYQCKGAPQPSDIRQIIEKRMNGEDIELMLDDSELKK 289 (360)
T ss_pred -CCCCchhhHHHhcCCCChhHHHHHHHHHhcCchHHHHhhhhhhhh
Confidence 000000111112344555577777776666555554444444433
No 175
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=2.9e-10 Score=122.68 Aligned_cols=180 Identities=16% Similarity=0.139 Sum_probs=120.1
Q ss_pred HHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhc----------------CCCCCceEEEEecccCCCh
Q 003175 473 TAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVES----------------GSIRPYCFVEVNGLKLASP 536 (842)
Q Consensus 473 ~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~----------------~~~~~~~~v~in~~~~~s~ 536 (842)
.+.|...+..+. .++++||+||.|+||+++++.+++.+.+.... +..|++.+ +...
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~--i~p~----- 82 (325)
T PRK06871 11 YQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHI--LEPI----- 82 (325)
T ss_pred HHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE--Eccc-----
Confidence 334444444443 57899999999999999999999999875321 22233222 2110
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEE
Q 003175 537 ENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGI 616 (842)
Q Consensus 537 ~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~ 616 (842)
.|...+.++..+........ ...+...|+|||++|.|....++.|+++++. +...++||.+
T Consensus 83 -----------~~~~I~id~iR~l~~~~~~~-----~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE---Pp~~~~fiL~ 143 (325)
T PRK06871 83 -----------DNKDIGVDQVREINEKVSQH-----AQQGGNKVVYIQGAERLTEAAANALLKTLEE---PRPNTYFLLQ 143 (325)
T ss_pred -----------cCCCCCHHHHHHHHHHHhhc-----cccCCceEEEEechhhhCHHHHHHHHHHhcC---CCCCeEEEEE
Confidence 01223344444433332221 1234678999999999999899999999985 4667777778
Q ss_pred eCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 003175 617 ANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICRR 691 (842)
Q Consensus 617 tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~ 691 (842)
|+. ++.+++.++||+. .+.|+|++.+++.+.|..... .++..+..++ ....|.+..|++++..
T Consensus 144 t~~---~~~llpTI~SRC~--~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~---~l~~g~p~~A~~~~~~ 206 (325)
T PRK06871 144 ADL---SAALLPTIYSRCQ--TWLIHPPEEQQALDWLQAQSS----AEISEILTAL---RINYGRPLLALTFLEQ 206 (325)
T ss_pred ECC---hHhCchHHHhhce--EEeCCCCCHHHHHHHHHHHhc----cChHHHHHHH---HHcCCCHHHHHHHhhC
Confidence 776 5899999999994 699999999999999987642 2222233332 2346778777776644
No 176
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=2.5e-10 Score=123.10 Aligned_cols=186 Identities=18% Similarity=0.167 Sum_probs=117.8
Q ss_pred HHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHh-------------hcCCCCCceEEEEecccCCChHH
Q 003175 472 ITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEV-------------ESGSIRPYCFVEVNGLKLASPEN 538 (842)
Q Consensus 472 l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~-------------~~~~~~~~~~v~in~~~~~s~~~ 538 (842)
+.+.|...+..+. .++++||+||+|+||++++..+++.+.+.. ..+..|++.++...... ...+.
T Consensus 12 ~~~~l~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~-~~~k~ 89 (319)
T PRK08769 12 AYDQTVAALDAGR-LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR-TGDKL 89 (319)
T ss_pred HHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc-ccccc
Confidence 3344444444443 578899999999999999999999987642 12333443333211110 00000
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeC
Q 003175 539 IYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIAN 618 (842)
Q Consensus 539 ~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn 618 (842)
....+.++..+........ ...+...|+|||++|.|....++.|+++++.+ ...++||.+++
T Consensus 90 ----------~~~I~idqIR~l~~~~~~~-----p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP---p~~~~fiL~~~ 151 (319)
T PRK08769 90 ----------RTEIVIEQVREISQKLALT-----PQYGIAQVVIVDPADAINRAACNALLKTLEEP---SPGRYLWLISA 151 (319)
T ss_pred ----------cccccHHHHHHHHHHHhhC-----cccCCcEEEEeccHhhhCHHHHHHHHHHhhCC---CCCCeEEEEEC
Confidence 0012223333332222111 12245689999999999988899999999854 45666666777
Q ss_pred CCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003175 619 TMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICR 690 (842)
Q Consensus 619 ~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~ 690 (842)
. ++.+++.|+|||. .|.|++++.+++.+.|... ..++.....++ ....|.+..|+.++.
T Consensus 152 ~---~~~lLpTIrSRCq--~i~~~~~~~~~~~~~L~~~-----~~~~~~a~~~~---~l~~G~p~~A~~~~~ 210 (319)
T PRK08769 152 Q---PARLPATIRSRCQ--RLEFKLPPAHEALAWLLAQ-----GVSERAAQEAL---DAARGHPGLAAQWLR 210 (319)
T ss_pred C---hhhCchHHHhhhe--EeeCCCcCHHHHHHHHHHc-----CCChHHHHHHH---HHcCCCHHHHHHHhc
Confidence 6 5889999999994 5999999999999988753 23333333333 335788888777664
No 177
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.23 E-value=1e-10 Score=142.86 Aligned_cols=225 Identities=18% Similarity=0.223 Sum_probs=146.0
Q ss_pred ccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcC---CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC
Q 003175 443 QTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCD---DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS 519 (842)
Q Consensus 443 ~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~---~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~ 519 (842)
...+...++.|. ..++|.+..++.|...+.....+ ...+..+++|+||+|||||++++++++.+....
T Consensus 556 ~~~l~~l~~~l~-----~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~---- 626 (857)
T PRK10865 556 REKLLRMEQELH-----HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSD---- 626 (857)
T ss_pred HHHHHHHHHHhC-----CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC----
Confidence 344555555555 56789999999999999876532 111225789999999999999999999886321
Q ss_pred CCCceEEEEecccCCChHHHHHHHHHHHhCCCC---CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHH
Q 003175 520 IRPYCFVEVNGLKLASPENIYRVIYEALSGHRV---SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSV 596 (842)
Q Consensus 520 ~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~ 596 (842)
..+++++|..+...... ..+.|... ++... ..+.+.+.. ....||+|||++.+....++.
T Consensus 627 ---~~~i~id~se~~~~~~~-----~~LiG~~pgy~g~~~~-g~l~~~v~~--------~p~~vLllDEieka~~~v~~~ 689 (857)
T PRK10865 627 ---DAMVRIDMSEFMEKHSV-----SRLVGAPPGYVGYEEG-GYLTEAVRR--------RPYSVILLDEVEKAHPDVFNI 689 (857)
T ss_pred ---CcEEEEEhHHhhhhhhH-----HHHhCCCCcccccchh-HHHHHHHHh--------CCCCeEEEeehhhCCHHHHHH
Confidence 34899999877553222 22233222 22211 122322221 234799999999998888999
Q ss_pred HHHhhcCCCCC--------CCcEEEEEEeCCC-C---------------------CccccchhhhccCCceeEEecCCCH
Q 003175 597 LYNILDWPTKP--------NSKLIVIGIANTM-D---------------------LPEKLLPRISSRMGVQRLCFGPYNH 646 (842)
Q Consensus 597 L~~ll~~~~~~--------~~~vivI~~tn~~-d---------------------l~~~l~~~l~sR~~~~~i~f~p~~~ 646 (842)
|+++++..... -.+.+||++||.- + +...+.|.+.+|+. ..+.|.|++.
T Consensus 690 Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld-~iivF~PL~~ 768 (857)
T PRK10865 690 LLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRID-EVVVFHPLGE 768 (857)
T ss_pred HHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCC-eeEecCCCCH
Confidence 99999743211 1245678888851 0 11245678889997 5799999999
Q ss_pred HHHHHHHHHHhcCc---------c-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003175 647 QQLQEIISSRLKGI---------E-AFEKQAIEFASRKVAAISGDARRALEICRRAAE 694 (842)
Q Consensus 647 ~e~~~Il~~~l~~~---------~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~ 694 (842)
+++.+|+...+... . .++++++++++.......-.+|-.-.++++-+.
T Consensus 769 edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~ 826 (857)
T PRK10865 769 QHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIE 826 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHH
Confidence 99999988777542 1 478888888776432112235544444444443
No 178
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.23 E-value=1.2e-09 Score=110.42 Aligned_cols=262 Identities=17% Similarity=0.229 Sum_probs=151.5
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcC-----------CCC--------C
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESG-----------SIR--------P 522 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~-----------~~~--------~ 522 (842)
+.++++.-..+.... ..+. -.++++|||+|+||-|.+.++++++....-+. ... .
T Consensus 15 l~~~~e~~~~Lksl~----~~~d--~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLS----STGD--FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhc----ccCC--CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 455555544444333 2222 47899999999999999999999997521100 000 0
Q ss_pred ceEEEEecccCCC-hHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCC-CCCCCCcEEEEEecCcccccCChHHHHHh
Q 003175 523 YCFVEVNGLKLAS-PENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKI-GKEDDRPCILLIDELDLLVTRNQSVLYNI 600 (842)
Q Consensus 523 ~~~v~in~~~~~s-~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~-~~~~~~~~IlilDEid~L~~~~~~~L~~l 600 (842)
-..++|+.++... +..+.+. .|.+ ..+..++ ....+...|++|-|+|.|....|..|...
T Consensus 89 ~yHlEitPSDaG~~DRvViQe-----------------llKe-vAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRT 150 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQE-----------------LLKE-VAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRT 150 (351)
T ss_pred cceEEeChhhcCcccHHHHHH-----------------HHHH-HHhhcchhhccccceEEEEEechHhhhHHHHHHHHHH
Confidence 0122222222111 1111111 1111 1111111 11223568999999999999999999999
Q ss_pred hcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHh
Q 003175 601 LDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAIS 679 (842)
Q Consensus 601 l~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~ 679 (842)
++-.. .+.++++ +.|. ..++.+.++||+-. |.+|.++.+++..++...++..+ ..+.+.+.. ++..+.
T Consensus 151 MEkYs-~~~RlIl--~cns---~SriIepIrSRCl~--iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~r---Ia~kS~ 219 (351)
T KOG2035|consen 151 MEKYS-SNCRLIL--VCNS---TSRIIEPIRSRCLF--IRVPAPSDEEITSVLSKVLKKEGLQLPKELLKR---IAEKSN 219 (351)
T ss_pred HHHHh-cCceEEE--EecC---cccchhHHhhheeE--EeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHH---HHHHhc
Confidence 98543 2445555 5565 47888999999954 99999999999999999998766 455555544 445579
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHHHHHc
Q 003175 680 GDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYELYKT 759 (842)
Q Consensus 680 Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~~~~~ 759 (842)
||+|+|+-.|..+...-+ ........|..-|.+.++.++... .+..-+....+-..+.+..+...
T Consensus 220 ~nLRrAllmlE~~~~~n~-----------~~~a~~~~i~~~dWe~~i~e~a~~----i~~eQs~~~L~~vR~~LYeLL~~ 284 (351)
T KOG2035|consen 220 RNLRRALLMLEAVRVNNE-----------PFTANSQVIPKPDWEIYIQEIARV----ILKEQSPAKLLEVRGRLYELLSH 284 (351)
T ss_pred ccHHHHHHHHHHHHhccc-----------cccccCCCCCCccHHHHHHHHHHH----HHhccCHHHHHHHHHHHHHHHhc
Confidence 999999877665443211 111123556666777777665442 22233333333334444444444
Q ss_pred CCccee-HHHHHHHH
Q 003175 760 GMGETN-FEKLAMTV 773 (842)
Q Consensus 760 g~~~~~-~~~v~~~y 773 (842)
...+.+ |.++...+
T Consensus 285 CIPP~~Ilk~Ll~~L 299 (351)
T KOG2035|consen 285 CIPPNTILKELLEEL 299 (351)
T ss_pred cCChHHHHHHHHHHH
Confidence 444333 44444433
No 179
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.22 E-value=7.6e-10 Score=120.99 Aligned_cols=147 Identities=18% Similarity=0.303 Sum_probs=100.4
Q ss_pred CcEEEEEecCcccccCC------------hHHHHHhhcCCC-------CCCCcEEEEEEeCC-CCCccccchhhhccCCc
Q 003175 577 RPCILLIDELDLLVTRN------------QSVLYNILDWPT-------KPNSKLIVIGIANT-MDLPEKLLPRISSRMGV 636 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~------------~~~L~~ll~~~~-------~~~~~vivI~~tn~-~dl~~~l~~~l~sR~~~ 636 (842)
...||||||||.+.... |..|+.+++... -...++.||+..-= ..-+..|.|.|..||.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P- 327 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFP- 327 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc-
Confidence 45799999999998642 567888887532 12356777754431 1124567899999998
Q ss_pred eeEEecCCCHHHHHHHHHH----HhcCc-------c---cCcHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHH
Q 003175 637 QRLCFGPYNHQQLQEIISS----RLKGI-------E---AFEKQAIEFASRKVAAI-----SGDARRALEICRRAAEIAD 697 (842)
Q Consensus 637 ~~i~f~p~~~~e~~~Il~~----~l~~~-------~---~~~~~~l~~ia~~~~~~-----~Gd~R~al~ll~~A~~~A~ 697 (842)
.++.+.+++.+++.+||.. .+++. + .|++++++.||+..... .--+|....++.+...-+.
T Consensus 328 i~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~ 407 (443)
T PRK05201 328 IRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDIS 407 (443)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHh
Confidence 5899999999999999943 33321 2 68999999999987652 4468887778887777655
Q ss_pred HHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 698 YRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
.+.. .. ....-.|+.+.|...+..+..
T Consensus 408 Fe~p------~~-~~~~v~I~~~~V~~~l~~l~~ 434 (443)
T PRK05201 408 FEAP------DM-SGETVTIDAAYVDEKLGDLVK 434 (443)
T ss_pred ccCC------CC-CCCEEEECHHHHHHHHHHHHh
Confidence 4421 11 112356888877776665543
No 180
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.22 E-value=1.2e-09 Score=119.38 Aligned_cols=147 Identities=18% Similarity=0.268 Sum_probs=101.3
Q ss_pred CcEEEEEecCcccccCC------------hHHHHHhhcCCC-------CCCCcEEEEEEeCCC-CCccccchhhhccCCc
Q 003175 577 RPCILLIDELDLLVTRN------------QSVLYNILDWPT-------KPNSKLIVIGIANTM-DLPEKLLPRISSRMGV 636 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~------------~~~L~~ll~~~~-------~~~~~vivI~~tn~~-dl~~~l~~~l~sR~~~ 636 (842)
...||||||||.+..+. |..|+.+++... -...++.||+..-=. --+..|.|.+..||.
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P- 325 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFP- 325 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc-
Confidence 45799999999998642 667888887532 123567777654311 124568899999998
Q ss_pred eeEEecCCCHHHHHHHHHH----HhcC-------cc---cCcHHHHHHHHHHHHH-----HhcCHHHHHHHHHHHHHHHH
Q 003175 637 QRLCFGPYNHQQLQEIISS----RLKG-------IE---AFEKQAIEFASRKVAA-----ISGDARRALEICRRAAEIAD 697 (842)
Q Consensus 637 ~~i~f~p~~~~e~~~Il~~----~l~~-------~~---~~~~~~l~~ia~~~~~-----~~Gd~R~al~ll~~A~~~A~ 697 (842)
.++.+.+++.+++..||.. .+++ .+ .|++++++.||+.... ..--+|....++.+..+-+.
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~ 405 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDIS 405 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHH
Confidence 5899999999999999932 2221 12 6899999999998765 24468887788888777665
Q ss_pred HHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 698 YRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
.+.. . .....-.|+.+.|...+..+..
T Consensus 406 fe~p------~-~~~~~v~I~~~~V~~~l~~~~~ 432 (441)
T TIGR00390 406 FEAP------D-LSGQNITIDADYVSKKLGALVA 432 (441)
T ss_pred hcCC------C-CCCCEEEECHHHHHhHHHHHHh
Confidence 4421 1 1123456888888777766544
No 181
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.22 E-value=3.9e-10 Score=125.17 Aligned_cols=213 Identities=18% Similarity=0.260 Sum_probs=129.2
Q ss_pred CCCCcHHHHHHHHHHHHHhhcC------Cc------ccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEE
Q 003175 461 FLPCRNKEMEDITAFIKGATCD------DQ------CLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEV 528 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~------~~------~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~i 528 (842)
.++|+++.++.+...+.....+ .. ....++||+||||||||++++++++.+. .+|+.+
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~----------~pf~~~ 147 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN----------VPFAIA 147 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC----------CCeEEe
Confidence 3568888888777666332211 00 0146899999999999999999998775 457778
Q ss_pred ecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC--------------Ch
Q 003175 529 NGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR--------------NQ 594 (842)
Q Consensus 529 n~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~--------------~~ 594 (842)
++..+.... +.|.. ....|...+... ...-....+.||+|||+|.+..+ -|
T Consensus 148 da~~L~~~g---------yvG~d-----~e~~L~~~~~~~-~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq 212 (413)
T TIGR00382 148 DATTLTEAG---------YVGED-----VENILLKLLQAA-DYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQ 212 (413)
T ss_pred chhhccccc---------ccccc-----HHHHHHHHHHhC-cccHHhcccceEEecccchhchhhccccccccccchhHH
Confidence 876653221 11110 111122221111 00001124579999999999862 37
Q ss_pred HHHHHhhcCCC----------CCCCcEEEEEEeCCC-----------------------CCc------------------
Q 003175 595 SVLYNILDWPT----------KPNSKLIVIGIANTM-----------------------DLP------------------ 623 (842)
Q Consensus 595 ~~L~~ll~~~~----------~~~~~vivI~~tn~~-----------------------dl~------------------ 623 (842)
+.|+++|+... .+....++|.|+|-+ .+.
T Consensus 213 ~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~ 292 (413)
T TIGR00382 213 QALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVE 292 (413)
T ss_pred HHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHH
Confidence 88999996321 012345666666641 100
Q ss_pred -----c-ccchhhhccCCceeEEecCCCHHHHHHHHHHH----hcC---------cc-cCcHHHHHHHHHHHHHHhcCHH
Q 003175 624 -----E-KLLPRISSRMGVQRLCFGPYNHQQLQEIISSR----LKG---------IE-AFEKQAIEFASRKVAAISGDAR 683 (842)
Q Consensus 624 -----~-~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~----l~~---------~~-~~~~~~l~~ia~~~~~~~Gd~R 683 (842)
. .|.|.+..|+. ..+.|.|++.+++.+|+... ++. .. .+++++++++++......--+|
T Consensus 293 ~~dl~~~g~~PEflgRld-~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR 371 (413)
T TIGR00382 293 PEDLVKFGLIPEFIGRLP-VIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGAR 371 (413)
T ss_pred HHHHHHHhhHHHHhCCCC-eEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCch
Confidence 0 15578888998 57889999999999999763 221 11 6889999999887433333456
Q ss_pred HHHHHHHHHHHHHHHH
Q 003175 684 RALEICRRAAEIADYR 699 (842)
Q Consensus 684 ~al~ll~~A~~~A~~~ 699 (842)
..-.++++.+.-+..+
T Consensus 372 ~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 372 GLRSIVEGLLLDVMFD 387 (413)
T ss_pred HHHHHHHHhhHHHHhh
Confidence 5555666666655444
No 182
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.21 E-value=1.7e-10 Score=126.97 Aligned_cols=190 Identities=27% Similarity=0.357 Sum_probs=123.1
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCC--------------CceEEE
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIR--------------PYCFVE 527 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~--------------~~~~v~ 527 (842)
+.+.+....++..++... +. .++.+||+||||+|||+++.++++.+.+....+..+ ...+++
T Consensus 3 ~~~~~~~~~~l~~~~~~~---~~-~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~le 78 (325)
T COG0470 3 LVPWQEAVKRLLVQALES---GR-LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLE 78 (325)
T ss_pred cccchhHHHHHHHHHHhc---CC-CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEE
Confidence 344455555555555432 22 245699999999999999999999998654322221 135888
Q ss_pred EecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCC
Q 003175 528 VNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKP 607 (842)
Q Consensus 528 in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~ 607 (842)
+|............ ..+.+.+.+... ...+...||||||+|.|....++.|..+++.+
T Consensus 79 l~~s~~~~~~i~~~---------------~vr~~~~~~~~~----~~~~~~kviiidead~mt~~A~nallk~lEep--- 136 (325)
T COG0470 79 LNPSDLRKIDIIVE---------------QVRELAEFLSES----PLEGGYKVVIIDEADKLTEDAANALLKTLEEP--- 136 (325)
T ss_pred ecccccCCCcchHH---------------HHHHHHHHhccC----CCCCCceEEEeCcHHHHhHHHHHHHHHHhccC---
Confidence 88776554321111 112222222111 11246789999999999998899999999854
Q ss_pred CCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHH
Q 003175 608 NSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALE 687 (842)
Q Consensus 608 ~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ 687 (842)
.....||.++|. +..+.+.++||+. .+.|+|++.......+. +.+++.+. ....||+|.+++
T Consensus 137 ~~~~~~il~~n~---~~~il~tI~SRc~--~i~f~~~~~~~~i~~~e----------~~~l~~i~---~~~~gd~r~~i~ 198 (325)
T COG0470 137 PKNTRFILITND---PSKILPTIRSRCQ--RIRFKPPSRLEAIAWLE----------DQGLEEIA---AVAEGDARKAIN 198 (325)
T ss_pred CCCeEEEEEcCC---hhhccchhhhcce--eeecCCchHHHHHHHhh----------ccchhHHH---HHHHHHHHcCCC
Confidence 556777778885 6888899999995 59999844443333222 33444433 335899999988
Q ss_pred HHHHHHHH
Q 003175 688 ICRRAAEI 695 (842)
Q Consensus 688 ll~~A~~~ 695 (842)
.++.....
T Consensus 199 ~lq~~~~~ 206 (325)
T COG0470 199 PLQALAAL 206 (325)
T ss_pred HHHHHHHh
Confidence 88776654
No 183
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.21 E-value=1.6e-10 Score=110.63 Aligned_cols=147 Identities=24% Similarity=0.270 Sum_probs=94.4
Q ss_pred CcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHH
Q 003175 464 CRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVI 543 (842)
Q Consensus 464 gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i 543 (842)
+++.++..+...+.. . .+.+++|+|+||+|||++++.+++.+... ...++++++............+
T Consensus 2 ~~~~~~~~i~~~~~~----~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL----P--PPKNLLLYGPPGTGKTTLARAIANELFRP-------GAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC----C--CCCeEEEECCCCCCHHHHHHHHHHHhhcC-------CCCeEEEehhhhhhhhHHHHHh
Confidence 667777777666643 1 26789999999999999999999998621 1558888887655432222111
Q ss_pred HHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCC---CCcEEEEEEeCCC
Q 003175 544 YEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKP---NSKLIVIGIANTM 620 (842)
Q Consensus 544 ~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~---~~~vivI~~tn~~ 620 (842)
... ........ .....+.+|+|||++.+.......+..+++..... ...+.+|+++|..
T Consensus 69 ~~~-----------~~~~~~~~-------~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 69 GHF-----------LVRLLFEL-------AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred hhh-----------hHhHHHHh-------hccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 100 00000011 01235689999999998554455666666654322 4678888888875
Q ss_pred CCccccchhhhccCCceeEEecC
Q 003175 621 DLPEKLLPRISSRMGVQRLCFGP 643 (842)
Q Consensus 621 dl~~~l~~~l~sR~~~~~i~f~p 643 (842)
.. ..+.+.+.+|+. .+|.|+|
T Consensus 131 ~~-~~~~~~~~~r~~-~~i~~~~ 151 (151)
T cd00009 131 LL-GDLDRALYDRLD-IRIVIPL 151 (151)
T ss_pred cc-CCcChhHHhhhc-cEeecCC
Confidence 43 467788899997 5677764
No 184
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.21 E-value=2.2e-10 Score=122.36 Aligned_cols=166 Identities=20% Similarity=0.234 Sum_probs=109.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHH-hCCCCCHHHHHHHHHHHh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEAL-SGHRVSWKKALHSLNERF 565 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l-~g~~~~~~~~~~~L~~~f 565 (842)
+++++|.|+||||||++++.+++.++ .+++.|++....++.++...-.-.+ .|... ..|
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~----------~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~----------~~f 123 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLN----------WPCVRVNLDSHVSRIDLVGKDAIVLKDGKQI----------TEF 123 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHC----------CCeEEEEecCCCChhhcCCCceeeccCCcce----------eEE
Confidence 56799999999999999999999998 5689999998877644332110000 01000 011
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCC------C-----CCCCcEEEEEEeCCCCC---------ccc
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWP------T-----KPNSKLIVIGIANTMDL---------PEK 625 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~------~-----~~~~~vivI~~tn~~dl---------~~~ 625 (842)
..+ .+......+.+|++||+|......+..|..+++.. . .++..+.||++.|..+. ...
T Consensus 124 ~~G-pL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~ 202 (327)
T TIGR01650 124 RDG-ILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQ 202 (327)
T ss_pred ecC-cchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeec
Confidence 110 01111135689999999999888888888898731 1 13446889999998651 245
Q ss_pred cchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHH
Q 003175 626 LLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRK 674 (842)
Q Consensus 626 l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~ 674 (842)
+...+.+||. ..+.+.-++.++-.+||..+..... ...+.+++++.+.
T Consensus 203 l~~A~lDRF~-i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~l 251 (327)
T TIGR01650 203 INQAQMDRWS-IVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRV 251 (327)
T ss_pred CCHHHHhhee-eEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence 6788999996 3567888999999999987754322 1123444444443
No 185
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.21 E-value=8.3e-10 Score=112.43 Aligned_cols=137 Identities=19% Similarity=0.295 Sum_probs=103.3
Q ss_pred CCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCC---------CCccccchhhhccCCceeEEecCC
Q 003175 574 EDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTM---------DLPEKLLPRISSRMGVQRLCFGPY 644 (842)
Q Consensus 574 ~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~---------dl~~~l~~~l~sR~~~~~i~f~p~ 644 (842)
+.--|.||||||++.|.-.....|...++ ..-++++++ +||+- ..+..+.-.+..|+- .|.-.||
T Consensus 285 AeivpGVLFIDEvHMLDIEcFsFlNrAlE---~d~~Piiim-aTNrgit~iRGTn~~SphGiP~D~lDR~l--II~t~py 358 (454)
T KOG2680|consen 285 AEIVPGVLFIDEVHMLDIECFSFLNRALE---NDMAPIIIM-ATNRGITRIRGTNYRSPHGIPIDLLDRML--IISTQPY 358 (454)
T ss_pred eeeccceEEEeeehhhhhHHHHHHHHHhh---hccCcEEEE-EcCCceEEeecCCCCCCCCCcHHHhhhhh--eeecccC
Confidence 34457899999999997655666666665 234566665 55651 234555667778875 4899999
Q ss_pred CHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHH
Q 003175 645 NHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVE 723 (842)
Q Consensus 645 ~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~ 723 (842)
+.+++.+||..|....+ .+++++++++.++- ..-.+|++++++..|...|..+. ...+..+||.
T Consensus 359 ~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~--~~tsLRYai~Lit~a~~~~~krk-------------~~~v~~~di~ 423 (454)
T KOG2680|consen 359 TEEDIKKILRIRCQEEDVEMNPDALDLLTKIG--EATSLRYAIHLITAASLVCLKRK-------------GKVVEVDDIE 423 (454)
T ss_pred cHHHHHHHHHhhhhhhccccCHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHhc-------------CceeehhHHH
Confidence 99999999999998765 78899999987653 34579999999999888887763 5678899999
Q ss_pred HHHHHHhh
Q 003175 724 AAIQEMFQ 731 (842)
Q Consensus 724 ~A~~~~~~ 731 (842)
.+..-++.
T Consensus 424 r~y~LFlD 431 (454)
T KOG2680|consen 424 RVYRLFLD 431 (454)
T ss_pred HHHHHHhh
Confidence 98875554
No 186
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.19 E-value=3.7e-10 Score=127.62 Aligned_cols=176 Identities=24% Similarity=0.326 Sum_probs=126.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
..+.+||+||||.||||||+.+|++.+ +.+++||++.-.+...+-..|...+..+.+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----------YsVvEINASDeRt~~~v~~kI~~avq~~s~------------- 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----------YSVVEINASDERTAPMVKEKIENAVQNHSV------------- 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----------ceEEEecccccccHHHHHHHHHHHHhhccc-------------
Confidence 468899999999999999999999988 889999999999988888777776644321
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCC--C---CCC----------Cc-E--EEEEEeCCCCCccccc
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWP--T---KPN----------SK-L--IVIGIANTMDLPEKLL 627 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~--~---~~~----------~~-v--ivI~~tn~~dl~~~l~ 627 (842)
..+..+|..|||||||--....-++|+.+++.- . ... .+ + -||+|+|++ .-
T Consensus 382 ------l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL-----Ya 450 (877)
T KOG1969|consen 382 ------LDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL-----YA 450 (877)
T ss_pred ------cccCCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc-----cc
Confidence 123468999999999976654567788887621 0 000 11 1 367888863 23
Q ss_pred hhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 003175 628 PRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYR 699 (842)
Q Consensus 628 ~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~ 699 (842)
|.|+- -+. ..|.|.|++..-+.+-|+......+ ..+..++..++++ ..+|+|..|+.|+-....+.++
T Consensus 451 PaLR~Lr~~A-~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el---~~~DIRsCINtLQfLa~~~~r~ 521 (877)
T KOG1969|consen 451 PALRPLRPFA-EIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCEL---TQNDIRSCINTLQFLASNVDRR 521 (877)
T ss_pred hhhhhcccce-EEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHH---hcchHHHHHHHHHHHHHhcccc
Confidence 33322 222 5799999999988877777765544 5566677665555 5899999999988777665543
No 187
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.19 E-value=6.4e-11 Score=129.37 Aligned_cols=208 Identities=17% Similarity=0.209 Sum_probs=142.1
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHH
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYR 541 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~ 541 (842)
|+|+...++++.+.+..+... ...|+|+|++||||+++|+++....... .-+|+.|||..+.. .
T Consensus 1 liG~S~~m~~~~~~~~~~a~~----~~pVLI~GE~GtGK~~lAr~iH~~s~r~-------~~pfv~vnc~~~~~-----~ 64 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL----DRPVLIIGERGTGKELIAARLHYLSKRW-------QGPLVKLNCAALSE-----N 64 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC----CCCEEEECCCCChHHHHHHHHHHhcCcc-------CCCeEEEeCCCCCh-----H
Confidence 457788888888888887653 4679999999999999999887654421 14699999998653 2
Q ss_pred HHHHHHhCCCCC-HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------CCCcEE
Q 003175 542 VIYEALSGHRVS-WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--------PNSKLI 612 (842)
Q Consensus 542 ~i~~~l~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--------~~~~vi 612 (842)
.+...++|+..+ +..+...-...|.. ....+||||||+.|....|..|+.+++.... ....+.
T Consensus 65 ~l~~~lfG~~~g~~~ga~~~~~G~~~~--------a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 65 LLDSELFGHEAGAFTGAQKRHQGRFER--------ADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred HHHHHHhccccccccCcccccCCchhh--------CCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 233344453211 11110000011111 1357899999999998889999998864321 124578
Q ss_pred EEEEeCCCCCc-----cccchhhhccCCceeEEecCCC--HHHHHHHHHHHhcCc---------ccCcHHHHHHHHHHHH
Q 003175 613 VIGIANTMDLP-----EKLLPRISSRMGVQRLCFGPYN--HQQLQEIISSRLKGI---------EAFEKQAIEFASRKVA 676 (842)
Q Consensus 613 vI~~tn~~dl~-----~~l~~~l~sR~~~~~i~f~p~~--~~e~~~Il~~~l~~~---------~~~~~~~l~~ia~~~~ 676 (842)
||++|+. ++. ..+.+.|..||....|.+||+. .+++..++...+... ..+++++++.+...
T Consensus 137 iI~at~~-~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y-- 213 (329)
T TIGR02974 137 LVCATNA-DLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY-- 213 (329)
T ss_pred EEEechh-hHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC--
Confidence 8888875 221 2455778888876789999997 477877777665421 35888898887654
Q ss_pred HHhcCHHHHHHHHHHHHHHH
Q 003175 677 AISGDARRALEICRRAAEIA 696 (842)
Q Consensus 677 ~~~Gd~R~al~ll~~A~~~A 696 (842)
...||+|+..+++.+++..+
T Consensus 214 ~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 214 HWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCCchHHHHHHHHHHHHHhC
Confidence 46899999999999988765
No 188
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.19 E-value=2.4e-10 Score=139.83 Aligned_cols=227 Identities=16% Similarity=0.168 Sum_probs=149.8
Q ss_pred CcccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcC---CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhc
Q 003175 441 HKQTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCD---DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVES 517 (842)
Q Consensus 441 ~~~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~---~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~ 517 (842)
.....+....+.|+ ..++|.+..++.|...+.....+ ...+-.+++|+||+|||||.|++.+++.+....
T Consensus 495 ~~~~~l~~l~~~L~-----~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~-- 567 (821)
T CHL00095 495 SESEKLLHMEETLH-----KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE-- 567 (821)
T ss_pred hHHHHHHHHHHHhc-----CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc--
Confidence 33444556666666 56789999999999999765432 222235688999999999999999999986431
Q ss_pred CCCCCceEEEEecccCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh
Q 003175 518 GSIRPYCFVEVNGLKLASPENIYRVIYEALSGHR---VSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ 594 (842)
Q Consensus 518 ~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~---~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~ 594 (842)
..++.+++..+...+.+...+ |.. +++.+. ..|.+.+.. +...||||||+|.+....+
T Consensus 568 -----~~~~~~d~s~~~~~~~~~~l~-----g~~~gyvg~~~~-~~l~~~~~~--------~p~~VvllDeieka~~~v~ 628 (821)
T CHL00095 568 -----DAMIRLDMSEYMEKHTVSKLI-----GSPPGYVGYNEG-GQLTEAVRK--------KPYTVVLFDEIEKAHPDIF 628 (821)
T ss_pred -----cceEEEEchhccccccHHHhc-----CCCCcccCcCcc-chHHHHHHh--------CCCeEEEECChhhCCHHHH
Confidence 358999988877654433322 322 122221 122233221 2458999999999988889
Q ss_pred HHHHHhhcCCCC--------CCCcEEEEEEeCCC-----------CCc-----------------------cccchhhhc
Q 003175 595 SVLYNILDWPTK--------PNSKLIVIGIANTM-----------DLP-----------------------EKLLPRISS 632 (842)
Q Consensus 595 ~~L~~ll~~~~~--------~~~~vivI~~tn~~-----------dl~-----------------------~~l~~~l~s 632 (842)
+.|+++|+.... .-.+.+||++||-- .+. ..+.|.+.+
T Consensus 629 ~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln 708 (821)
T CHL00095 629 NLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN 708 (821)
T ss_pred HHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc
Confidence 999999985421 12467888898841 010 114467888
Q ss_pred cCCceeEEecCCCHHHHHHHHHHHhcCc----------ccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003175 633 RMGVQRLCFGPYNHQQLQEIISSRLKGI----------EAFEKQAIEFASRKVAAISGDARRALEICRRAAE 694 (842)
Q Consensus 633 R~~~~~i~f~p~~~~e~~~Il~~~l~~~----------~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~ 694 (842)
|++ ..|.|.|++.+++.+|+...+..+ -.+++++++++++......--+|-.-.++++-+.
T Consensus 709 Rid-~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~ 779 (821)
T CHL00095 709 RLD-EIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLE 779 (821)
T ss_pred cCC-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Confidence 997 579999999999999998877642 1578888888877532112234443344444443
No 189
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=3.4e-09 Score=115.26 Aligned_cols=182 Identities=17% Similarity=0.243 Sum_probs=116.1
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhh-----------------cCCCCCceEEEEeccc---CCChHHHHHHHHH
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVE-----------------SGSIRPYCFVEVNGLK---LASPENIYRVIYE 545 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~-----------------~~~~~~~~~v~in~~~---~~s~~~~~~~i~~ 545 (842)
.++++||+||+|+||+++++.+++.+.+... .+..|++.++.-.... ..+....+.....
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD 99 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence 5789999999999999999999999987532 1233443333211100 0000000100000
Q ss_pred HHhC-------CCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeC
Q 003175 546 ALSG-------HRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIAN 618 (842)
Q Consensus 546 ~l~g-------~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn 618 (842)
. .| ...+.++..+.+. .+... ...+...|+|||++|.|.....+.|+++++. +...++||.+|+
T Consensus 100 ~-~~~k~~~~~~~I~idqiR~l~~-~~~~~----~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE---Pp~~t~fiL~t~ 170 (342)
T PRK06964 100 E-GGKKTKAPSKEIKIEQVRALLD-FCGVG----THRGGARVVVLYPAEALNVAAANALLKTLEE---PPPGTVFLLVSA 170 (342)
T ss_pred c-ccccccccccccCHHHHHHHHH-HhccC----CccCCceEEEEechhhcCHHHHHHHHHHhcC---CCcCcEEEEEEC
Confidence 0 01 1123344443333 22211 2234678999999999999889999999984 566778888887
Q ss_pred CCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 003175 619 TMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICRR 691 (842)
Q Consensus 619 ~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~ 691 (842)
. ++.+++.|+||+ +.|.|+|++.+++.+.|... + +++. +.+ .....|++.+|+.++..
T Consensus 171 ~---~~~LLpTI~SRc--q~i~~~~~~~~~~~~~L~~~--~---~~~~--~~~---l~~~~Gsp~~Al~~~~~ 228 (342)
T PRK06964 171 R---IDRLLPTILSRC--RQFPMTVPAPEAAAAWLAAQ--G---VADA--DAL---LAEAGGAPLAALALASD 228 (342)
T ss_pred C---hhhCcHHHHhcC--EEEEecCCCHHHHHHHHHHc--C---CChH--HHH---HHHcCCCHHHHHHHHCC
Confidence 7 589999999999 56999999999999999875 1 2221 111 23347888888877643
No 190
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.18 E-value=3.4e-10 Score=129.65 Aligned_cols=218 Identities=17% Similarity=0.248 Sum_probs=125.3
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEE-ecccCCChHHHH
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEV-NGLKLASPENIY 540 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~i-n~~~~~s~~~~~ 540 (842)
|.-..+-+++|..+|...+.+.. ..+.++|+||+|||||++++.++++++ +.+++- |...+.......
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~-~~~iLlLtGP~G~GKtttv~~La~elg----------~~v~Ew~np~~~~~~~~~~ 89 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSS-PKRILLLTGPSGCGKTTTVKVLAKELG----------FEVQEWINPVSFRESDNQE 89 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCC-CcceEEEECCCCCCHHHHHHHHHHHhC----------CeeEEecCCCCcccccccc
Confidence 45566788999999998776543 357889999999999999999999997 334442 322211110000
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHH-hhcccC--C---C-CCCCCcEEEEEecCcccccCChHHHHHhhc-CCCCCCC-cE
Q 003175 541 RVIYEALSGHRVSWKKALHSLNER-FLDGKK--I---G-KEDDRPCILLIDELDLLVTRNQSVLYNILD-WPTKPNS-KL 611 (842)
Q Consensus 541 ~~i~~~l~g~~~~~~~~~~~L~~~-f~~~~~--~---~-~~~~~~~IlilDEid~L~~~~~~~L~~ll~-~~~~~~~-~v 611 (842)
... .........+......+.+. +..... + + ....+..||+|||+-.+.......|..+|. |...... ++
T Consensus 90 ~d~-~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~Pl 168 (519)
T PF03215_consen 90 DDF-ESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSSRCLPL 168 (519)
T ss_pred ccc-cccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcCCCCCE
Confidence 000 00000000000011111111 111111 0 0 112467899999999887766555555443 2233344 88
Q ss_pred EEEEEeC-C----CCC-------ccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc-----c--cCc--HHHHHH
Q 003175 612 IVIGIAN-T----MDL-------PEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI-----E--AFE--KQAIEF 670 (842)
Q Consensus 612 ivI~~tn-~----~dl-------~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~-----~--~~~--~~~l~~ 670 (842)
+||.+-. . ... ...+.+.+........|.|.|....-+...|...+... + ... ...++.
T Consensus 169 V~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~ 248 (519)
T PF03215_consen 169 VFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDS 248 (519)
T ss_pred EEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHH
Confidence 8876511 0 000 11345677777777889999999988888888777543 1 222 223554
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Q 003175 671 ASRKVAAISGDARRALEICRRAAE 694 (842)
Q Consensus 671 ia~~~~~~~Gd~R~al~ll~~A~~ 694 (842)
| +....||+|.||+.|+-.+.
T Consensus 249 I---~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 249 I---AESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred H---HHhcCchHHHHHHHHHHHhc
Confidence 4 34457999999999987776
No 191
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.18 E-value=6.3e-12 Score=140.16 Aligned_cols=97 Identities=24% Similarity=0.428 Sum_probs=70.3
Q ss_pred ccccccccCcccccceeeeeeCCCc----c----ccCCccc-c---ccccCCCCCCccccccccceeecccc-cccccCc
Q 003175 140 TRSCKVENLKKRRVYYKKVVYDDGE----F----EVGDDVY-V---KRREDASSDEEDPEVEECRICFRAGR-SVMLECD 206 (842)
Q Consensus 140 ~~~~~~~~~p~~r~~~~~~~~~~~~----~----~~~~~~~-~---~~~~~~~~~~~~~~~~~C~~C~~~~~-~~~l~Cd 206 (842)
.|+++++.||.+|..|..+.+..-. + ....... + .............+...|.+|...+. ++||+||
T Consensus 155 sWsR~aqTCPiDR~EF~~v~V~eS~~~~~~vR~lP~EEs~~~~e~~~d~~~d~~~~~~~E~~~C~IC~~~DpEdVLLLCD 234 (1134)
T KOG0825|consen 155 SWSRCAQTCPVDRGEFGEVKVLESTGIEANVRCLPSEESENILEKGGDEKQDQISGLSQEEVKCDICTVHDPEDVLLLCD 234 (1134)
T ss_pred hhhhhcccCchhhhhhheeeeeccccccceeEecchhhhhhhhhhccccccccccCcccccccceeeccCChHHhheeec
Confidence 7999999999999999888776311 0 0000000 0 00000111123345567999999887 8999999
Q ss_pred cCCCc-cccccCCCCCCCCCCCCcccccccc
Q 003175 207 DCLGG-FHLKCLKPPLKEVPEGEWVCEFCEA 236 (842)
Q Consensus 207 ~C~~~-~H~~C~~p~l~~~p~~~W~C~~C~~ 236 (842)
.|+.+ ||++||+|+|.++|-+.|||++|.-
T Consensus 235 sCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 235 SCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred ccccceeeccccCcccccccccceecCcchh
Confidence 99988 9999999999999999999999954
No 192
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.18 E-value=1e-10 Score=121.76 Aligned_cols=198 Identities=18% Similarity=0.286 Sum_probs=104.0
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHH
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYR 541 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~ 541 (842)
+.||++|++.|..++.. + ....++|+||+|+|||+|++.+++.+.... ...+|++.........+..
T Consensus 1 F~gR~~el~~l~~~l~~----~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-------~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 1 FFGREKELEKLKELLES----G--PSQHILLYGPRGSGKTSLLKEFINELKEKG-------YKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT--E-------ECCCHHCCTTBSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh----h--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-------CcEEEEecccchhhhHHHH
Confidence 57999999999988875 2 258899999999999999999999885321 2355565544333222222
Q ss_pred H-------------HHHHHhCCCC---------CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccc-c--CChH-
Q 003175 542 V-------------IYEALSGHRV---------SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLV-T--RNQS- 595 (842)
Q Consensus 542 ~-------------i~~~l~g~~~---------~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~-~--~~~~- 595 (842)
. +...+.+... ........+.+.+... +..+||||||+|.+. . ....
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-------~~~~iiviDe~~~~~~~~~~~~~~ 140 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKK-------GKKVIIVIDEFQYLAIASEEDKDF 140 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHC-------HCCEEEEEETGGGGGBCTTTTHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhc-------CCcEEEEEecHHHHhhcccchHHH
Confidence 2 1111111110 1112222222222221 133999999999999 2 2233
Q ss_pred --HHHHhhcCCCCCCCcEEEEEEeCCCCCccc---cchhhhccCCceeEEecCCCHHHHHHHHHHHhcCccc--CcHHHH
Q 003175 596 --VLYNILDWPTKPNSKLIVIGIANTMDLPEK---LLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEA--FEKQAI 668 (842)
Q Consensus 596 --~L~~ll~~~~~~~~~vivI~~tn~~dl~~~---l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~--~~~~~l 668 (842)
.|.++++... ...++.+|.++....+... -...+..|+. .+.++|++.++..+++...+..... ++++.+
T Consensus 141 ~~~l~~~~~~~~-~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLL-SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFS--HIELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH-----TTEEEEEEESSHHHHHHTT-TTSTTTT-----EEEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhcc-ccCCceEEEECCchHHHHHhhcccCccccccc--eEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 3444444321 2344555544443212212 1223455665 3999999999999999998765532 377777
Q ss_pred HHHHHHHHHHhcCHHHH
Q 003175 669 EFASRKVAAISGDARRA 685 (842)
Q Consensus 669 ~~ia~~~~~~~Gd~R~a 685 (842)
+.+... +.|.++..
T Consensus 218 ~~i~~~---~gG~P~~l 231 (234)
T PF01637_consen 218 EEIYSL---TGGNPRYL 231 (234)
T ss_dssp HHHHHH---HTT-HHHH
T ss_pred HHHHHH---hCCCHHHH
Confidence 665555 47777753
No 193
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.8e-10 Score=131.81 Aligned_cols=207 Identities=16% Similarity=0.204 Sum_probs=143.7
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCC----CceEEEEecccCCCh
Q 003175 461 FLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIR----PYCFVEVNGLKLASP 536 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~----~~~~v~in~~~~~s~ 536 (842)
-++||++|++++.+.|....+ ++-+++|+||+|||+++.-+|..+.. ++.| +..++.++...+
T Consensus 171 PvIGRd~EI~r~iqIL~RR~K------NNPvLiGEpGVGKTAIvEGLA~rIv~----g~VP~~L~~~~i~sLD~g~L--- 237 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTK------NNPVLVGEPGVGKTAIVEGLAQRIVN----GDVPESLKDKRIYSLDLGSL--- 237 (786)
T ss_pred CCcChHHHHHHHHHHHhccCC------CCCeEecCCCCCHHHHHHHHHHHHhc----CCCCHHHcCCEEEEecHHHH---
Confidence 388999999999999977443 34479999999999999999998873 3333 234444443221
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh-----HHHHHhhcCCCCCCCcE
Q 003175 537 ENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ-----SVLYNILDWPTKPNSKL 611 (842)
Q Consensus 537 ~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~-----~~L~~ll~~~~~~~~~v 611 (842)
+.|.+.- .+..+.|..++.+... . .++||||||+|.+..... -..-|++. +.+..+.+
T Consensus 238 ----------vAGakyR-GeFEeRlk~vl~ev~~----~-~~vILFIDEiHtiVGAG~~~G~a~DAaNiLK-PaLARGeL 300 (786)
T COG0542 238 ----------VAGAKYR-GEFEERLKAVLKEVEK----S-KNVILFIDEIHTIVGAGATEGGAMDAANLLK-PALARGEL 300 (786)
T ss_pred ----------hcccccc-CcHHHHHHHHHHHHhc----C-CCeEEEEechhhhcCCCcccccccchhhhhH-HHHhcCCe
Confidence 2232210 1222334444433321 1 379999999999987542 23555555 44567889
Q ss_pred EEEEEeCCCCCcccc--chhhhccCCceeEEecCCCHHHHHHHHHHHhcCc----c-cCcHHHHHHHHHHHHHHhcC---
Q 003175 612 IVIGIANTMDLPEKL--LPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI----E-AFEKQAIEFASRKVAAISGD--- 681 (842)
Q Consensus 612 ivI~~tn~~dl~~~l--~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~----~-~~~~~~l~~ia~~~~~~~Gd--- 681 (842)
-+||+|+..++...+ +++|.+||. .|.+..|+.++-..||+-.-..+ + .+.|+++..++.+...+-.|
T Consensus 301 ~~IGATT~~EYRk~iEKD~AL~RRFQ--~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~L 378 (786)
T COG0542 301 RCIGATTLDEYRKYIEKDAALERRFQ--KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFL 378 (786)
T ss_pred EEEEeccHHHHHHHhhhchHHHhcCc--eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCC
Confidence 999998764443334 579999995 59999999999999998776543 2 67899999998887776544
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003175 682 ARRALEICRRAAEIADYR 699 (842)
Q Consensus 682 ~R~al~ll~~A~~~A~~~ 699 (842)
+.+|++++..|+.....+
T Consensus 379 PDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 379 PDKAIDLLDEAGARVRLE 396 (786)
T ss_pred CchHHHHHHHHHHHHHhc
Confidence 678999999998766543
No 194
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=7.8e-10 Score=125.53 Aligned_cols=230 Identities=21% Similarity=0.292 Sum_probs=146.6
Q ss_pred CCcHHHHHHHHHHHHHhhcCC---cccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 463 PCRNKEMEDITAFIKGATCDD---QCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 463 ~gRe~e~~~l~~~l~~~i~~~---~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
++++..+..+.+++.....-+ ......+|++|+||+|||+++++++++++ .+++.++|.++.+.
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg----------~h~~evdc~el~~~--- 470 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELG----------LHLLEVDCYELVAE--- 470 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhC----------CceEeccHHHHhhc---
Confidence 344555555555554432221 11356899999999999999999999998 67999999876542
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC--------hHHHHHhh--cCCCCCCC
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN--------QSVLYNIL--DWPTKPNS 609 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~--------~~~L~~ll--~~~~~~~~ 609 (842)
+.......+...|..++. ..|.||||-.+|.|.-.+ +..+..++ +.......
T Consensus 471 -------------s~~~~etkl~~~f~~a~~-----~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~ 532 (953)
T KOG0736|consen 471 -------------SASHTETKLQAIFSRARR-----CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCP 532 (953)
T ss_pred -------------ccchhHHHHHHHHHHHhh-----cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCC
Confidence 122333455666666543 388999999999987543 12333333 33444677
Q ss_pred cEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHH-hcCHHHHHHH
Q 003175 610 KLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAI-SGDARRALEI 688 (842)
Q Consensus 610 ~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~-~Gd~R~al~l 688 (842)
+++||++++++ +.+.+.+++-|. .+|.++-++.+|+.+||+..+.....-.+..+..+++++.+. .||+.. +
T Consensus 533 ~~ivv~t~~s~---~~lp~~i~~~f~-~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~---l 605 (953)
T KOG0736|consen 533 PVIVVATTSSI---EDLPADIQSLFL-HEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEA---L 605 (953)
T ss_pred ceEEEEecccc---ccCCHHHHHhhh-hhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHH---H
Confidence 89999999874 677888888776 689999999999999999999866555555555555554332 234332 2
Q ss_pred HHHHHHHHHHHHhhhc-------cCCCcCCcCCCcccHHHHHHHHHHHh
Q 003175 689 CRRAAEIADYRIKKQT-------SNKNSASVGKSLVGMADVEAAIQEMF 730 (842)
Q Consensus 689 l~~A~~~A~~~~~~~~-------~~~~~~~~~~~~It~~dv~~A~~~~~ 730 (842)
...+-..+..+..... ............|+++||.+|+.++.
T Consensus 606 ~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~ 654 (953)
T KOG0736|consen 606 VAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQ 654 (953)
T ss_pred hcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHH
Confidence 2222111221111110 11222333457899999999998654
No 195
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=1.4e-09 Score=117.02 Aligned_cols=178 Identities=16% Similarity=0.218 Sum_probs=118.5
Q ss_pred HHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhh---------------cCCCCCceEEEEecccCCCh
Q 003175 472 ITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVE---------------SGSIRPYCFVEVNGLKLASP 536 (842)
Q Consensus 472 l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~---------------~~~~~~~~~v~in~~~~~s~ 536 (842)
..+.|...+..+. .++++||+||.|+||+++++.+++.+.+... .+..|++.++.-..
T Consensus 11 ~~~~l~~~~~~~r-l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~------ 83 (319)
T PRK06090 11 VWQNWKAGLDAGR-IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK------ 83 (319)
T ss_pred HHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc------
Confidence 3344444444443 5789999999999999999999999976532 22333333332110
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEE
Q 003175 537 ENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGI 616 (842)
Q Consensus 537 ~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~ 616 (842)
.|...+.++..+. .+.+... ...+...|+|||++|.|....++.|+++++.+ ..+.+||.+
T Consensus 84 -----------~~~~I~vdqiR~l-~~~~~~~----~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP---p~~t~fiL~ 144 (319)
T PRK06090 84 -----------EGKSITVEQIRQC-NRLAQES----SQLNGYRLFVIEPADAMNESASNALLKTLEEP---APNCLFLLV 144 (319)
T ss_pred -----------CCCcCCHHHHHHH-HHHHhhC----cccCCceEEEecchhhhCHHHHHHHHHHhcCC---CCCeEEEEE
Confidence 0112233333332 2222211 12245689999999999988899999999854 567788878
Q ss_pred eCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003175 617 ANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICR 690 (842)
Q Consensus 617 tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~ 690 (842)
|+. ++++++.|+||+. .+.|++++.+++.+.|... + .+. ...++ ....|++..|++++.
T Consensus 145 t~~---~~~lLpTI~SRCq--~~~~~~~~~~~~~~~L~~~--~---~~~--~~~~l---~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 145 THN---QKRLLPTIVSRCQ--QWVVTPPSTAQAMQWLKGQ--G---ITV--PAYAL---KLNMGSPLKTLAMMK 203 (319)
T ss_pred ECC---hhhChHHHHhcce--eEeCCCCCHHHHHHHHHHc--C---Cch--HHHHH---HHcCCCHHHHHHHhC
Confidence 876 5889999999994 6999999999999988754 1 121 12222 335788888877764
No 196
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.16 E-value=2.1e-10 Score=124.34 Aligned_cols=242 Identities=16% Similarity=0.175 Sum_probs=141.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
..++|+++.++.+.-.+- ..+ .+++||+|+||||||++++.++.-|.........+ +.+..+.+.........
T Consensus 8 ~~i~Gq~~~~~~l~~~~~---~~~---~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~-~~~~~~~~~~~~~~~~~ 80 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAI---DPG---IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCP-VNSARPEDCPEWAHVSS 80 (334)
T ss_pred HHhCCHHHHHHHHHHHHh---ccC---CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccc-cccCcccCCcccccccC
Confidence 346788887776654322 112 36799999999999999999999885322111110 11111111100000000
Q ss_pred HHHHHH--------------HHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 540 YRVIYE--------------ALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 540 ~~~i~~--------------~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
...+.. .+.|. ..+...+..=...|..+ .+ ......+|+|||++.+..+.|+.|.+.++...
T Consensus 81 ~~~~~~~~p~~~~p~~~t~~~l~G~-~d~~~~l~~g~~~~~~G-~l--~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~ 156 (334)
T PRK13407 81 TTMIERPTPVVDLPLGVTEDRVVGA-LDIERALTRGEKAFEPG-LL--ARANRGYLYIDEVNLLEDHIVDLLLDVAQSGE 156 (334)
T ss_pred CcccccCCccccCCCCCCcceeecc-hhhhhhhhcCCeeecCC-ce--EEcCCCeEEecChHhCCHHHHHHHHHHHHcCC
Confidence 000000 00010 00000000000011111 01 01123589999999999888999999986432
Q ss_pred ----------CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCH-HHHHHHHHHHhcCc--------------
Q 003175 606 ----------KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNH-QQLQEIISSRLKGI-------------- 660 (842)
Q Consensus 606 ----------~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~-~e~~~Il~~~l~~~-------------- 660 (842)
....++++|++.|..+ ..+.+.+..||.. .+.++++.. ++..+|+..+....
T Consensus 157 v~v~r~G~~~~~p~rfiviAt~NP~e--~~l~~aLldRF~~-~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~ 233 (334)
T PRK13407 157 NVVEREGLSIRHPARFVLVGSGNPEE--GELRPQLLDRFGL-SVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAED 233 (334)
T ss_pred eEEEECCeEEecCCCEEEEecCCccc--CCCCHHHHhhcce-EEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccc
Confidence 1245789998888532 3477789999984 566665555 88888887753210
Q ss_pred ----------------ccCcHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHH
Q 003175 661 ----------------EAFEKQAIEFASRKVAAIS-GDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVE 723 (842)
Q Consensus 661 ----------------~~~~~~~l~~ia~~~~~~~-Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~ 723 (842)
-.+++++++++.+.+.... ...|-.+.+++.|...|..+ +...|+.+||.
T Consensus 234 ~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~-------------Gr~~V~~~Di~ 300 (334)
T PRK13407 234 MQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFE-------------GAEAVGRSHLR 300 (334)
T ss_pred cCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHc-------------CCCeeCHHHHH
Confidence 1357788888888876644 36787888888888888766 57889999998
Q ss_pred HHHHH
Q 003175 724 AAIQE 728 (842)
Q Consensus 724 ~A~~~ 728 (842)
.+..-
T Consensus 301 ~~~~~ 305 (334)
T PRK13407 301 SVATM 305 (334)
T ss_pred HHHHH
Confidence 77643
No 197
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.14 E-value=5.5e-10 Score=109.41 Aligned_cols=143 Identities=27% Similarity=0.386 Sum_probs=89.3
Q ss_pred HHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhc---------------CCCCCceEEEEecccCCCh
Q 003175 472 ITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVES---------------GSIRPYCFVEVNGLKLASP 536 (842)
Q Consensus 472 l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~---------------~~~~~~~~v~in~~~~~s~ 536 (842)
+.+.|...+..+. .++++||+||+|+||+++|..+++.+.+.... +..++ +++++.....
T Consensus 5 ~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d--~~~~~~~~~~-- 79 (162)
T PF13177_consen 5 IIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD--FIIIKPDKKK-- 79 (162)
T ss_dssp HHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT--EEEEETTTSS--
T ss_pred HHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc--eEEEeccccc--
Confidence 3444444555553 58899999999999999999999999765433 22232 4444333210
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEE
Q 003175 537 ENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGI 616 (842)
Q Consensus 537 ~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~ 616 (842)
.....++.. .+.+.+... ...+...|+||||+|.|....++.|+.+++.+ ...+.||.+
T Consensus 80 -------------~~i~i~~ir-~i~~~~~~~----~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep---p~~~~fiL~ 138 (162)
T PF13177_consen 80 -------------KSIKIDQIR-EIIEFLSLS----PSEGKYKVIIIDEADKLTEEAQNALLKTLEEP---PENTYFILI 138 (162)
T ss_dssp -------------SSBSHHHHH-HHHHHCTSS-----TTSSSEEEEEETGGGS-HHHHHHHHHHHHST---TTTEEEEEE
T ss_pred -------------chhhHHHHH-HHHHHHHHH----HhcCCceEEEeehHhhhhHHHHHHHHHHhcCC---CCCEEEEEE
Confidence 012233333 333333221 22346789999999999999999999999954 567777778
Q ss_pred eCCCCCccccchhhhccCCceeEEecCCC
Q 003175 617 ANTMDLPEKLLPRISSRMGVQRLCFGPYN 645 (842)
Q Consensus 617 tn~~dl~~~l~~~l~sR~~~~~i~f~p~~ 645 (842)
|+. ++.+++.++||+ ..|.|++++
T Consensus 139 t~~---~~~il~TI~SRc--~~i~~~~ls 162 (162)
T PF13177_consen 139 TNN---PSKILPTIRSRC--QVIRFRPLS 162 (162)
T ss_dssp ES----GGGS-HHHHTTS--EEEEE----
T ss_pred ECC---hHHChHHHHhhc--eEEecCCCC
Confidence 876 589999999999 469998864
No 198
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=99.13 E-value=3e-11 Score=119.48 Aligned_cols=59 Identities=37% Similarity=0.820 Sum_probs=50.5
Q ss_pred ccCCCCCCccccccccceeecccccccccCc--cCC-CccccccCCCCCCCCCCCCccccccccc
Q 003175 176 REDASSDEEDPEVEECRICFRAGRSVMLECD--DCL-GGFHLKCLKPPLKEVPEGEWVCEFCEAR 237 (842)
Q Consensus 176 ~~~~~~~~~~~~~~~C~~C~~~~~~~~l~Cd--~C~-~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 237 (842)
....+++.+.++..|| .|+.+..+.||-|| .|. .|||+.|+| |...|+|.|||+.|...
T Consensus 209 ~~vss~d~se~e~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 209 RGVSSEDNSEGEELYC-FCQQVSYGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKKA 270 (271)
T ss_pred cCcCccccccCceeEE-EecccccccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHhc
Confidence 3344456667788999 89999888899999 688 999999999 99999999999999753
No 199
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.13 E-value=2.3e-10 Score=134.19 Aligned_cols=212 Identities=17% Similarity=0.204 Sum_probs=145.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChH
Q 003175 458 LPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPE 537 (842)
Q Consensus 458 ~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~ 537 (842)
..+.++|....++++.+.+..+... ...|+|+|++|||||++|+++....... .-+|+.|||..+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~----~~pvli~Ge~GtGK~~lA~~ih~~s~r~-------~~pfv~i~c~~~~~-- 260 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARS----NSTVLLRGESGTGKELIAKAIHYLSPRA-------KRPFVKVNCAALSE-- 260 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCc----CCCEEEECCCCccHHHHHHHHHHhCCCC-------CCCeEEeecCCCCH--
Confidence 3457899999999999999887643 4679999999999999999998765421 14599999998743
Q ss_pred HHHHHHHHHHhCCCCC-HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------CC
Q 003175 538 NIYRVIYEALSGHRVS-WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--------PN 608 (842)
Q Consensus 538 ~~~~~i~~~l~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--------~~ 608 (842)
..+...++|+..+ +..+...-...|. .....+||||||+.|....|..|+.+++.... ..
T Consensus 261 ---~~~~~~lfg~~~~~~~~~~~~~~g~~~--------~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 329 (534)
T TIGR01817 261 ---TLLESELFGHEKGAFTGAIAQRKGRFE--------LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLK 329 (534)
T ss_pred ---HHHHHHHcCCCCCccCCCCcCCCCccc--------ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEe
Confidence 2233444454311 0000000000010 12347899999999998889999998864321 01
Q ss_pred CcEEEEEEeCCCCC-----ccccchhhhccCCceeEEecCCC--HHHHHHHHHHHhcCc-------ccCcHHHHHHHHHH
Q 003175 609 SKLIVIGIANTMDL-----PEKLLPRISSRMGVQRLCFGPYN--HQQLQEIISSRLKGI-------EAFEKQAIEFASRK 674 (842)
Q Consensus 609 ~~vivI~~tn~~dl-----~~~l~~~l~sR~~~~~i~f~p~~--~~e~~~Il~~~l~~~-------~~~~~~~l~~ia~~ 674 (842)
..+.||++++.. + ...+.+.+..|+....|.+||+. .+++..++...+... ..+++++++.+...
T Consensus 330 ~~~riI~~s~~~-l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~ 408 (534)
T TIGR01817 330 VDVRLVAATNRD-LEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSC 408 (534)
T ss_pred ecEEEEEeCCCC-HHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhC
Confidence 247788887652 2 12455667778876789999997 577877777776532 25888898887654
Q ss_pred HHHHhcCHHHHHHHHHHHHHHH
Q 003175 675 VAAISGDARRALEICRRAAEIA 696 (842)
Q Consensus 675 ~~~~~Gd~R~al~ll~~A~~~A 696 (842)
...||+|+..+++++|+..+
T Consensus 409 --~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 409 --KWPGNVRELENCLERTATLS 428 (534)
T ss_pred --CCCChHHHHHHHHHHHHHhC
Confidence 36899999999999988765
No 200
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=99.12 E-value=2.7e-09 Score=107.72 Aligned_cols=204 Identities=21% Similarity=0.290 Sum_probs=136.3
Q ss_pred HHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCC-
Q 003175 473 TAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHR- 551 (842)
Q Consensus 473 ~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~- 551 (842)
...+...+..+ .+.+.++|+.|+|||.+.|++...+... ....++|+...+.. ..+...|...+.+..
T Consensus 40 l~~l~~~i~d~---qg~~~vtGevGsGKTv~~Ral~~s~~~d-------~~~~v~i~~~~~s~-~~~~~ai~~~l~~~p~ 108 (269)
T COG3267 40 LLMLHAAIADG---QGILAVTGEVGSGKTVLRRALLASLNED-------QVAVVVIDKPTLSD-ATLLEAIVADLESQPK 108 (269)
T ss_pred HHHHHHHHhcC---CceEEEEecCCCchhHHHHHHHHhcCCC-------ceEEEEecCcchhH-HHHHHHHHHHhccCcc
Confidence 33444455544 3578899999999999999666666532 14467888777554 445555555554422
Q ss_pred CCHH----HHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCcccc-
Q 003175 552 VSWK----KALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKL- 626 (842)
Q Consensus 552 ~~~~----~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l- 626 (842)
.... .....|.+.+... +++.++++||++.|.....+.|.-+.+.......++.++.+.. +.+..++
T Consensus 109 ~~~~~~~e~~~~~L~al~~~g-------~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq-p~L~~~lr 180 (269)
T COG3267 109 VNVNAVLEQIDRELAALVKKG-------KRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQ-PKLRPRLR 180 (269)
T ss_pred chhHHHHHHHHHHHHHHHHhC-------CCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCC-cccchhhc
Confidence 2222 2223344444322 4779999999999988777777777776655556655554443 2333222
Q ss_pred ---chhhhccCCceeEEecCCCHHHHHHHHHHHhcCc----ccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 003175 627 ---LPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI----EAFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYR 699 (842)
Q Consensus 627 ---~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~----~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~ 699 (842)
...+..|+.. +|.++|++.++....|+.+++.. +.|+++++..+... ..|-+|...++|..|...|...
T Consensus 181 ~~~l~e~~~R~~i-r~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~---sqg~P~lin~~~~~Al~~a~~a 256 (269)
T COG3267 181 LPVLRELEQRIDI-RIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEA---SQGIPRLINNLATLALDAAYSA 256 (269)
T ss_pred hHHHHhhhheEEE-EEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHH---hccchHHHHHHHHHHHHHHHHc
Confidence 2355567774 49999999999999999999865 37888888887665 4678887778888888877654
No 201
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.11 E-value=3.9e-09 Score=104.98 Aligned_cols=173 Identities=19% Similarity=0.242 Sum_probs=125.1
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHH
Q 003175 461 FLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIY 540 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~ 540 (842)
.|+|-+.|.+.|.+.....+.+.. .+++|++|..|||||+|++++.+++.... ...|+|+-..+.+-..
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~p--ANnVLLwGaRGtGKSSLVKA~~~e~~~~g-------lrLVEV~k~dl~~Lp~-- 129 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLP--ANNVLLWGARGTGKSSLVKALLNEYADEG-------LRLVEVDKEDLATLPD-- 129 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCc--ccceEEecCCCCChHHHHHHHHHHHHhcC-------CeEEEEcHHHHhhHHH--
Confidence 478999999999999999888764 79999999999999999999999998653 5589998665544222
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC-ChHHHHHhhcCC-CCCCCcEEEEEEeC
Q 003175 541 RVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR-NQSVLYNILDWP-TKPNSKLIVIGIAN 618 (842)
Q Consensus 541 ~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~-~~~~L~~ll~~~-~~~~~~vivI~~tn 618 (842)
|.++| . ......|||.|++-.=... .-..|..+++.. .....+|+|.+++|
T Consensus 130 --l~~~L--------------r-----------~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 130 --LVELL--------------R-----------ARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred --HHHHH--------------h-----------cCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 22222 1 1236689999998643332 246788888754 33456899999999
Q ss_pred CCCCc-----c------cc------ch--hhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHH
Q 003175 619 TMDLP-----E------KL------LP--RISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFAS 672 (842)
Q Consensus 619 ~~dl~-----~------~l------~~--~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia 672 (842)
+-.+. + .+ .. .+..||+ .-+.|.|.+.++...|+...++..+ .++++.++.-|
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFG-LwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eA 255 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFG-LWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEA 255 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcc-eeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 73222 1 11 11 3567999 4899999999999999999998765 45565554433
No 202
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2e-09 Score=116.95 Aligned_cols=133 Identities=26% Similarity=0.349 Sum_probs=96.0
Q ss_pred CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003175 483 DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLN 562 (842)
Q Consensus 483 ~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~ 562 (842)
|.+--++.|||||||||||+++.++|+.|. +.+.-++-....+..+ |+
T Consensus 231 GkawKRGYLLYGPPGTGKSS~IaAmAn~L~----------ydIydLeLt~v~~n~d----------------------Lr 278 (457)
T KOG0743|consen 231 GKAWKRGYLLYGPPGTGKSSFIAAMANYLN----------YDIYDLELTEVKLDSD----------------------LR 278 (457)
T ss_pred CcchhccceeeCCCCCCHHHHHHHHHhhcC----------CceEEeeeccccCcHH----------------------HH
Confidence 333457899999999999999999999998 6666666655554422 22
Q ss_pred HHhhcccCCCCCCCCcEEEEEecCccccc---CC---------------hHHHHHhhcCC--CCCCCcEEEEEEeCCCCC
Q 003175 563 ERFLDGKKIGKEDDRPCILLIDELDLLVT---RN---------------QSVLYNILDWP--TKPNSKLIVIGIANTMDL 622 (842)
Q Consensus 563 ~~f~~~~~~~~~~~~~~IlilDEid~L~~---~~---------------~~~L~~ll~~~--~~~~~~vivI~~tn~~dl 622 (842)
.++... ....||||.+||.-.. +. .+-|+|++|+. .....+|+| +|||.
T Consensus 279 ~LL~~t-------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIiv-FTTNh--- 347 (457)
T KOG0743|consen 279 HLLLAT-------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIV-FTTNH--- 347 (457)
T ss_pred HHHHhC-------CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEE-EecCC---
Confidence 222211 2458999999998643 11 12488888854 443455555 58887
Q ss_pred ccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcC
Q 003175 623 PEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKG 659 (842)
Q Consensus 623 ~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~ 659 (842)
.++|+|+|.+ |++ ..|++.--+.+++..++...+..
T Consensus 348 ~EkLDPALlRpGRmD-mhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 348 KEKLDPALLRPGRMD-MHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred hhhcCHhhcCCCcce-eEEEcCCCCHHHHHHHHHHhcCC
Confidence 6999999998 777 58999999999999999988864
No 203
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.11 E-value=4.2e-11 Score=111.91 Aligned_cols=94 Identities=14% Similarity=0.207 Sum_probs=76.1
Q ss_pred hhhhhhhhhceeeccCCc------------eEEEEEeecCCcccccCCCCCcccccccccCCccccccchhccceeeeCc
Q 003175 265 SDLWAANIQSMWKEVDGN------------YWCRVFWYMIPEETAAGRQPHNLRRELYRTNDFANIEMESIIRHCSVMSP 332 (842)
Q Consensus 265 ~~~~~~~I~~i~~~~~g~------------~~~~~~w~~~peEt~~~~~~~~~~~Evf~s~~~d~~~~~~I~~kc~V~~~ 332 (842)
..+|||||.+||...++. ..++|+|||||+|+..+. ..-.+|||.|.+.|.+++++|.|||.|...
T Consensus 27 ePyyIgrI~e~~~~~~~~~~~~~~~~~~~~~~vrV~wfYRp~Di~~~~--~~d~relf~S~h~d~~p~~si~gKC~V~~~ 104 (135)
T cd04710 27 EPYYIGRIMEFVPKHEFPSGIHARVFPASYFQVRLNWYYRPRDISRRV--VADSRLLYASMHSDICPIGSVRGKCTVRHR 104 (135)
T ss_pred CCCEEEEEEEEEecCCCCccccccccCCCcEEEEEEEEeCHHHcCCcc--cCCceEEEEEeeEeeechHHEEeEEEEEEe
Confidence 367899999999965433 579999999999974333 345899999999999999999999999988
Q ss_pred cccccc--ccCCCCEEEEeeEEecCcccee
Q 003175 333 KDFVKA--NDQGDDIFLCEYEYDIHWHSFK 360 (842)
Q Consensus 333 ~~y~~~--~~~~~~~~~C~~~y~~~~~~fk 360 (842)
.++... +...++.|||+.-||.....|.
T Consensus 105 ~di~~l~~~~~~~~~Fyf~~lyD~~~~r~~ 134 (135)
T cd04710 105 DQIPDLEEYKKRPNHFYFDQLFDRYILRYY 134 (135)
T ss_pred cccchhhhhccCCCEEEEEeeeCcchhhcc
Confidence 877642 3335899999999998766653
No 204
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.10 E-value=1.2e-09 Score=126.89 Aligned_cols=215 Identities=18% Similarity=0.185 Sum_probs=143.4
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC
Q 003175 456 ATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS 535 (842)
Q Consensus 456 ~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s 535 (842)
.+..+.++|....++++.+.+..+... ...+||+|++||||+++|+++-...... .-+|+.|||..+..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~----~~pvlI~GE~GtGK~~lA~aiH~~s~r~-------~~pfv~inca~~~~ 268 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAML----DAPLLITGDTGTGKDLLAYACHLRSPRG-------KKPFLALNCASIPD 268 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCC----CCCEEEECCCCccHHHHHHHHHHhCCCC-------CCCeEEeccccCCH
Confidence 345578999999999999988876553 4669999999999999999875543211 13599999998763
Q ss_pred hHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC--------C
Q 003175 536 PENIYRVIYEALSGHRVS-WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT--------K 606 (842)
Q Consensus 536 ~~~~~~~i~~~l~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~--------~ 606 (842)
..+...++|...+ +..+...-...|.. .....|+|||+|.|....|..|+.+++... .
T Consensus 269 -----~~~e~elFG~~~~~~~~~~~~~~g~~e~--------a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~ 335 (520)
T PRK10820 269 -----DVVESELFGHAPGAYPNALEGKKGFFEQ--------ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHE 335 (520)
T ss_pred -----HHHHHHhcCCCCCCcCCcccCCCChhhh--------cCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcc
Confidence 2333344453211 10000000011211 134689999999999888999999886431 1
Q ss_pred CCCcEEEEEEeCCCCCc-----cccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcC--------cccCcHHHHHHH
Q 003175 607 PNSKLIVIGIANTMDLP-----EKLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKG--------IEAFEKQAIEFA 671 (842)
Q Consensus 607 ~~~~vivI~~tn~~dl~-----~~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~--------~~~~~~~~l~~i 671 (842)
....+.||++|+.. +. ..+.+.+..|+....|.+||+.. +++..++...+.. ...+++++++++
T Consensus 336 ~~~~vRiI~st~~~-l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L 414 (520)
T PRK10820 336 VHVDVRVICATQKN-LVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 414 (520)
T ss_pred eeeeeEEEEecCCC-HHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 12356778777642 21 23456678888877899999966 5666665555432 126888888886
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHH
Q 003175 672 SRKVAAISGDARRALEICRRAAEIAD 697 (842)
Q Consensus 672 a~~~~~~~Gd~R~al~ll~~A~~~A~ 697 (842)
... ...||+|+.-+++.+|+..+.
T Consensus 415 ~~y--~WPGNvreL~nvl~~a~~~~~ 438 (520)
T PRK10820 415 TRY--GWPGNVRQLKNAIYRALTQLE 438 (520)
T ss_pred hcC--CCCCHHHHHHHHHHHHHHhCC
Confidence 543 368999999999999887654
No 205
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.10 E-value=3.4e-10 Score=123.78 Aligned_cols=211 Identities=17% Similarity=0.187 Sum_probs=143.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHH
Q 003175 459 PKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPEN 538 (842)
Q Consensus 459 p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~ 538 (842)
.+.|+|+...++++.+.+..+... ...|+|+|++||||+++|+++....... .-+|+.|||..+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~----~~pVlI~GE~GtGK~~lA~~iH~~s~r~-------~~pfv~v~c~~~~~--- 70 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPL----DKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNE--- 70 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCC----CCCEEEECCCCCcHHHHHHHHHHhCCcc-------CCCeEEEeCCCCCH---
Confidence 356889999999999999988754 4679999999999999999887543311 14599999998653
Q ss_pred HHHHHHHHHhCCCCC-HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------CCC
Q 003175 539 IYRVIYEALSGHRVS-WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--------PNS 609 (842)
Q Consensus 539 ~~~~i~~~l~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--------~~~ 609 (842)
..+...++|+..+ +......-...|.. .....|+|||+|.|....|..|..+++.... ...
T Consensus 71 --~~~~~~lfg~~~~~~~g~~~~~~g~l~~--------a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~ 140 (326)
T PRK11608 71 --NLLDSELFGHEAGAFTGAQKRHPGRFER--------ADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQV 140 (326)
T ss_pred --HHHHHHHccccccccCCcccccCCchhc--------cCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 2233344443211 00000000011111 1346899999999998889999999864321 113
Q ss_pred cEEEEEEeCCCCCc-----cccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcCc---------ccCcHHHHHHHHH
Q 003175 610 KLIVIGIANTMDLP-----EKLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKGI---------EAFEKQAIEFASR 673 (842)
Q Consensus 610 ~vivI~~tn~~dl~-----~~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~~---------~~~~~~~l~~ia~ 673 (842)
.+.||++++. ++. ..+.+.+..||....|.+||+.. +++..++.+.+... ..+++++++.+..
T Consensus 141 ~~RiI~~s~~-~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~ 219 (326)
T PRK11608 141 NVRLVCATNA-DLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLN 219 (326)
T ss_pred cEEEEEeCch-hHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHh
Confidence 5777877764 221 34557788888767899999965 66777776665321 2578888888765
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHH
Q 003175 674 KVAAISGDARRALEICRRAAEIA 696 (842)
Q Consensus 674 ~~~~~~Gd~R~al~ll~~A~~~A 696 (842)
. ...||+|+.-+++++|+..+
T Consensus 220 y--~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 220 Y--RWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred C--CCCcHHHHHHHHHHHHHHhc
Confidence 4 47899999999999888754
No 206
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.09 E-value=9.8e-10 Score=122.22 Aligned_cols=214 Identities=20% Similarity=0.261 Sum_probs=152.4
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChH
Q 003175 458 LPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPE 537 (842)
Q Consensus 458 ~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~ 537 (842)
....|+|+...+++|.+.+...... ..++||+|.+||||-.+|+++-+.-.+.. -+||.|||..+..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s----~a~VLI~GESGtGKElvAr~IH~~S~R~~-------~PFVavNcaAip~-- 205 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPS----DASVLITGESGTGKELVARAIHQASPRAK-------GPFIAVNCAAIPE-- 205 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCC----CCCEEEECCCCCcHHHHHHHHHhhCcccC-------CCceeeecccCCH--
Confidence 3456999999999999999987654 46799999999999999998876554321 3599999999774
Q ss_pred HHHHHHHHHHhCCCCC-HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------CC
Q 003175 538 NIYRVIYEALSGHRVS-WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--------PN 608 (842)
Q Consensus 538 ~~~~~i~~~l~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--------~~ 608 (842)
..+.+.|+|+..+ |..+...-...|..+ ....||||||..|.-.-|.-|+.++..... -.
T Consensus 206 ---~l~ESELFGhekGAFTGA~~~r~G~fE~A--------~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~ 274 (464)
T COG2204 206 ---NLLESELFGHEKGAFTGAITRRIGRFEQA--------NGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIK 274 (464)
T ss_pred ---HHHHHHhhcccccCcCCcccccCcceeEc--------CCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccc
Confidence 4556667786532 222211111233332 457999999999988888888888864321 13
Q ss_pred CcEEEEEEeCCCCCcc-----ccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcCc--------ccCcHHHHHHHHH
Q 003175 609 SKLIVIGIANTMDLPE-----KLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKGI--------EAFEKQAIEFASR 673 (842)
Q Consensus 609 ~~vivI~~tn~~dl~~-----~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~~--------~~~~~~~l~~ia~ 673 (842)
..|-||++||. |+.+ +|-..|--|+..-.|.+||+.. +++--++.+.+... ..+++++++.+..
T Consensus 275 vdvRiIaaT~~-dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~ 353 (464)
T COG2204 275 VDVRIIAATNR-DLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLA 353 (464)
T ss_pred eeeEEEeecCc-CHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 45789999886 3322 3445566788777788999854 66666666666532 3788888877644
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHH
Q 003175 674 KVAAISGDARRALEICRRAAEIADY 698 (842)
Q Consensus 674 ~~~~~~Gd~R~al~ll~~A~~~A~~ 698 (842)
..+.||+|+..+++++++.++..
T Consensus 354 --y~WPGNVREL~N~ver~~il~~~ 376 (464)
T COG2204 354 --YDWPGNVRELENVVERAVILSEG 376 (464)
T ss_pred --CCCChHHHHHHHHHHHHHhcCCc
Confidence 35789999999999999988753
No 207
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.09 E-value=1.1e-09 Score=127.23 Aligned_cols=213 Identities=18% Similarity=0.173 Sum_probs=147.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChH
Q 003175 458 LPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPE 537 (842)
Q Consensus 458 ~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~ 537 (842)
.+..++|+...++++.+.+..+... ...++|+|++||||+++++++....... .-+|+.|||..+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~----~~pVlI~Ge~GtGK~~~A~~ih~~s~r~-------~~p~v~v~c~~~~~-- 251 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS----DLNVLILGETGVGKELVARAIHAASPRA-------DKPLVYLNCAALPE-- 251 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC----CCcEEEECCCCccHHHHHHHHHHhCCcC-------CCCeEEEEcccCCh--
Confidence 4677999999999999999986653 5679999999999999999988765422 14699999998764
Q ss_pred HHHHHHHHHHhCCCCC-HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------CC
Q 003175 538 NIYRVIYEALSGHRVS-WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--------PN 608 (842)
Q Consensus 538 ~~~~~i~~~l~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--------~~ 608 (842)
..+...++|+..+ +......-...|.. .....|||||||.|....|..|+.+++.... ..
T Consensus 252 ---~~~e~~lfG~~~g~~~ga~~~~~g~~~~--------a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 252 ---SLAESELFGHVKGAFTGAISNRSGKFEL--------ADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred ---HHHHHHhcCccccccCCCcccCCcchhh--------cCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCccee
Confidence 2333445553211 00000000001111 1346789999999998888889888864321 12
Q ss_pred CcEEEEEEeCCCCCc-----cccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcCc--------ccCcHHHHHHHHH
Q 003175 609 SKLIVIGIANTMDLP-----EKLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKGI--------EAFEKQAIEFASR 673 (842)
Q Consensus 609 ~~vivI~~tn~~dl~-----~~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~~--------~~~~~~~l~~ia~ 673 (842)
..+-||++|+.. +. ..+...+..|+....|.+||+.. +++..++.+.+... ..+++++++.+..
T Consensus 321 ~~~RiI~~t~~~-l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~ 399 (509)
T PRK05022 321 VDVRVIAATNRD-LREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLA 399 (509)
T ss_pred cceEEEEecCCC-HHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 357788888752 21 23566777788777799999965 66776666655422 2688889888765
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHH
Q 003175 674 KVAAISGDARRALEICRRAAEIAD 697 (842)
Q Consensus 674 ~~~~~~Gd~R~al~ll~~A~~~A~ 697 (842)
. ...||+|+.-+++.+|+..+.
T Consensus 400 y--~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 400 Y--DWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred C--CCCCcHHHHHHHHHHHHHhcC
Confidence 4 468999999999999988765
No 208
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.08 E-value=6.2e-09 Score=113.17 Aligned_cols=243 Identities=17% Similarity=0.197 Sum_probs=147.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
..++|.++....|...+.+ .. .++++|.|++|||||++++.+.+.+.....-.. .+| +|.. ..+...
T Consensus 17 ~~ivGq~~~k~al~~~~~~----p~--~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~---~pf---~~~p-~~p~~~ 83 (350)
T CHL00081 17 TAIVGQEEMKLALILNVID----PK--IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKD---DPF---NSHP-SDPELM 83 (350)
T ss_pred HHHhChHHHHHHHHHhccC----CC--CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCC---CCC---CCCC-CChhhh
Confidence 4577777655555443322 32 457999999999999999999998875321111 112 1211 112111
Q ss_pred HHHHHHHHhC-C----------------CCCHHHHHH--HHHHHhhcccCC---C-CCCCCcEEEEEecCcccccCChHH
Q 003175 540 YRVIYEALSG-H----------------RVSWKKALH--SLNERFLDGKKI---G-KEDDRPCILLIDELDLLVTRNQSV 596 (842)
Q Consensus 540 ~~~i~~~l~g-~----------------~~~~~~~~~--~L~~~f~~~~~~---~-~~~~~~~IlilDEid~L~~~~~~~ 596 (842)
...+.....+ . ..+.+.... .+.+.|..+... + -......+|+|||++.|....|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~ 163 (350)
T CHL00081 84 SDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDI 163 (350)
T ss_pred chhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHH
Confidence 1111111100 0 001111100 122223222110 0 011235799999999999998999
Q ss_pred HHHhhcCCC----------CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCC-HHHHHHHHHHHhcCc-----
Q 003175 597 LYNILDWPT----------KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYN-HQQLQEIISSRLKGI----- 660 (842)
Q Consensus 597 L~~ll~~~~----------~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~-~~e~~~Il~~~l~~~----- 660 (842)
|+..++... ....++++|++.|.. ...+.+.+..||.. .+.+..++ .++..+|+..+....
T Consensus 164 LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~--eg~l~~~LldRf~l-~i~l~~~~~~~~e~~il~~~~~~~~~~~~ 240 (350)
T CHL00081 164 LLDSAASGWNTVEREGISIRHPARFVLVGSGNPE--EGELRPQLLDRFGM-HAEIRTVKDPELRVKIVEQRTSFDKNPQE 240 (350)
T ss_pred HHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcc--cCCCCHHHHHHhCc-eeecCCCCChHHHHHHHHhhhccccChhh
Confidence 999886421 124578888877754 23578889999984 67777776 588888887753210
Q ss_pred -------------------------ccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCC
Q 003175 661 -------------------------EAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGK 714 (842)
Q Consensus 661 -------------------------~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~ 714 (842)
-.+++.+++++++++....- ..|-.+.+++.|...|..+ +.
T Consensus 241 ~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~-------------GR 307 (350)
T CHL00081 241 FREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFE-------------GR 307 (350)
T ss_pred hhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHc-------------CC
Confidence 13677888888888766543 5888888888888888766 57
Q ss_pred CcccHHHHHHHHHHHhh
Q 003175 715 SLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 715 ~~It~~dv~~A~~~~~~ 731 (842)
..|+.+||..+..-+..
T Consensus 308 ~~V~pdDv~~~a~~vL~ 324 (350)
T CHL00081 308 TEVTPKDIFKVITLCLR 324 (350)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999988765543
No 209
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.07 E-value=3.3e-09 Score=115.39 Aligned_cols=139 Identities=19% Similarity=0.275 Sum_probs=102.7
Q ss_pred CcEEEEEecCcccccCChHHHHHhhcCCC----------CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCC-
Q 003175 577 RPCILLIDELDLLVTRNQSVLYNILDWPT----------KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYN- 645 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~~~~L~~ll~~~~----------~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~- 645 (842)
...+|+|||++.|....|..|+++++... ....++++|++.|.. ...+.+.+.+||.. .+.+..+.
T Consensus 131 ~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~--eg~l~~~LldRf~l-~i~l~~p~~ 207 (337)
T TIGR02030 131 NRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPE--EGELRPQLLDRFGL-HAEIRTVRD 207 (337)
T ss_pred cCCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccc--cCCCCHHHHhhcce-EEECCCCCC
Confidence 34799999999999888999999886431 123578888887753 23577899999995 55555554
Q ss_pred HHHHHHHHHHHhcC----------c--------------------ccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 003175 646 HQQLQEIISSRLKG----------I--------------------EAFEKQAIEFASRKVAAISG-DARRALEICRRAAE 694 (842)
Q Consensus 646 ~~e~~~Il~~~l~~----------~--------------------~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~ 694 (842)
.++..+|+..+... . -.++++++++++..+..... ..|..+.+++.|..
T Consensus 208 ~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA 287 (337)
T TIGR02030 208 VELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKA 287 (337)
T ss_pred HHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 48888888874321 0 13667888899888876555 47888889999988
Q ss_pred HHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 695 IADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 695 ~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
.|..+ ++..|+.+||..+..-+..
T Consensus 288 ~Aal~-------------GR~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 288 LAAFE-------------GRTEVTVDDIRRVAVLALR 311 (337)
T ss_pred HHHHc-------------CCCCCCHHHHHHHHHHHHH
Confidence 88876 5789999999988765543
No 210
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=99.05 E-value=3.9e-10 Score=113.17 Aligned_cols=141 Identities=21% Similarity=0.291 Sum_probs=71.0
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC-h----
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS-P---- 536 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s-~---- 536 (842)
++||++|+++|...+. ....+. +++++|+|++|+|||++++.++..+.... .+ +++++|..... +
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~~~--~~~~ll~G~~G~GKT~ll~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~ 71 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQSGS--PRNLLLTGESGSGKTSLLRALLDRLAERG------GY-VISINCDDSERNPYSPF 71 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS-------EEE-B-TTSSHHHHHHHHHHHHHHHT---------EEEEEEETTTS-HHHHH
T ss_pred CCCHHHHHHHHHHHHH-HHHcCC--CcEEEEECCCCCCHHHHHHHHHHHHHhcC------CE-EEEEEEeccccchhhHH
Confidence 7899999999999998 555554 78999999999999999999999998661 13 77888777531 1
Q ss_pred HHHHHHHHHHHhCCCC--------------------------------------CHHHHHHHHHHHhhcccCCCCCCCCc
Q 003175 537 ENIYRVIYEALSGHRV--------------------------------------SWKKALHSLNERFLDGKKIGKEDDRP 578 (842)
Q Consensus 537 ~~~~~~i~~~l~g~~~--------------------------------------~~~~~~~~L~~~f~~~~~~~~~~~~~ 578 (842)
..++..|..++..... ........+...+...........++
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 151 (185)
T PF13191_consen 72 RSALRQLIDQLLDQSQATTRSPLREKLAASLDDDAADLLVLLPDLDRLEAASALDPDSLEDRLEELLREILRELAARRKP 151 (185)
T ss_dssp HHHHHHHS------------------------------------------SS---HHHHH----HHHHHHHTTS-SE---
T ss_pred HHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccCCCHHHHHhHHHHHHHHHHHHHHhCCCe
Confidence 2333333333221100 00011111112222221111223456
Q ss_pred EEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEE
Q 003175 579 CILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVI 614 (842)
Q Consensus 579 ~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI 614 (842)
.||+||++|.+....+.+|..+++.... .+++||
T Consensus 152 ~vlviDd~d~~~~~~~~~l~~l~~~~~~--~~~~vv 185 (185)
T PF13191_consen 152 LVLVIDDLDWADPASLDLLRALARRLQN--DPLLVV 185 (185)
T ss_dssp EEEEEETTTHHHTTHHHHHHH---------------
T ss_pred EEEEEeCCCCCCcHHHHHHHhccccccc--ccccCC
Confidence 9999999999988888899999876532 255554
No 211
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.05 E-value=1.6e-09 Score=102.12 Aligned_cols=117 Identities=28% Similarity=0.319 Sum_probs=79.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCC---HHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVS---WKKALHSLNE 563 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~---~~~~~~~L~~ 563 (842)
.++++|+|++|+|||++++.+++.+........ ...++++++....+...++..|.+.+...... .....+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKN--HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLID 81 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC--CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 578999999999999999999999876432221 36789999999888999999999998644333 4555566666
Q ss_pred HhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEE
Q 003175 564 RFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIG 615 (842)
Q Consensus 564 ~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~ 615 (842)
.+... ...+|||||+|.|. ....+..+..+......+++|+|
T Consensus 82 ~l~~~--------~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G 123 (131)
T PF13401_consen 82 ALDRR--------RVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVG 123 (131)
T ss_dssp HHHHC--------TEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEE
T ss_pred HHHhc--------CCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEE
Confidence 65543 23799999999985 35555544444333344455544
No 212
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.03 E-value=6.6e-09 Score=114.27 Aligned_cols=166 Identities=23% Similarity=0.273 Sum_probs=109.7
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHH
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYR 541 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~ 541 (842)
+.|+++.+..+...+.. +++++|-|+||||||++++.++..++ ..|+.|+|.....+.+++.
T Consensus 26 ~~g~~~~~~~~l~a~~~--------~~~vll~G~PG~gKT~la~~lA~~l~----------~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 26 VVGDEEVIELALLALLA--------GGHVLLEGPPGVGKTLLARALARALG----------LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeccHHHHHHHHHHHHc--------CCCEEEECCCCccHHHHHHHHHHHhC----------CCeEEEecCCCCCHHHhcC
Confidence 56777777776666644 67899999999999999999999998 5599999998888766543
Q ss_pred HH-HHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC---------CCCCcE
Q 003175 542 VI-YEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT---------KPNSKL 611 (842)
Q Consensus 542 ~i-~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~---------~~~~~v 611 (842)
.. +..... ..-...|... ++..... .|+++|||+......|+.|+.+|+... .-...+
T Consensus 88 ~~~~~~~~~---------~~~~~~~~~g-pl~~~~~--~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f 155 (329)
T COG0714 88 TYAYAALLL---------EPGEFRFVPG-PLFAAVR--VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPF 155 (329)
T ss_pred chhHhhhhc---------cCCeEEEecC-Ccccccc--eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCC
Confidence 21 111100 0000011111 1111111 599999999999999999999997521 123568
Q ss_pred EEEEEeCCCCC--ccccchhhhccCCceeEEecCCCHHHHHHHHHHHhc
Q 003175 612 IVIGIANTMDL--PEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLK 658 (842)
Q Consensus 612 ivI~~tn~~dl--~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~ 658 (842)
+||+++|..+. ...+...+.+||. ..+.+..+..++...++..+..
T Consensus 156 ~viaT~Np~e~~g~~~l~eA~ldRf~-~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 156 IVIATQNPGEYEGTYPLPEALLDRFL-LRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEEEccCccccCCCcCCCHHHHhhEE-EEEecCCCCchHHHHHHHHhCc
Confidence 88988896433 3456778899996 3677777745554555544443
No 213
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.03 E-value=3.2e-09 Score=117.62 Aligned_cols=165 Identities=17% Similarity=0.262 Sum_probs=97.3
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHH
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYR 541 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~ 541 (842)
+...+..++.+...+.. +.+++|+|+||||||++|+.++..+.... .+..+....+..... |.
T Consensus 177 ~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~--------~~~~v~~VtFHpsyS-Ye 239 (459)
T PRK11331 177 LFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEK--------APQRVNMVQFHQSYS-YE 239 (459)
T ss_pred ccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCc--------ccceeeEEeeccccc-HH
Confidence 45667777777666653 57899999999999999999999886321 111122222121111 11
Q ss_pred HHHHHHhCCC---CCHH----HHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-hHHHHHhhcCC---------
Q 003175 542 VIYEALSGHR---VSWK----KALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-QSVLYNILDWP--------- 604 (842)
Q Consensus 542 ~i~~~l~g~~---~~~~----~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-~~~L~~ll~~~--------- 604 (842)
.+ +.|.. .++. -..+.+..+.. ....+.||||||++...... ...|+.+++..
T Consensus 240 DF---I~G~rP~~vgy~~~~G~f~~~~~~A~~-------~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~ 309 (459)
T PRK11331 240 DF---IQGYRPNGVGFRRKDGIFYNFCQQAKE-------QPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVP 309 (459)
T ss_pred HH---hcccCCCCCCeEecCchHHHHHHHHHh-------cccCCcEEEEehhhccCHHHhhhhhhhhcccccccccccee
Confidence 11 11221 1111 11122222211 12367999999999876443 45566666521
Q ss_pred ----------CCCCCcEEEEEEeCCCCC-ccccchhhhccCCceeEEecC-CCHHHHHHHHHH
Q 003175 605 ----------TKPNSKLIVIGIANTMDL-PEKLLPRISSRMGVQRLCFGP-YNHQQLQEIISS 655 (842)
Q Consensus 605 ----------~~~~~~vivI~~tn~~dl-~~~l~~~l~sR~~~~~i~f~p-~~~~e~~~Il~~ 655 (842)
.....++.||||.|+.|- ...++.++++||.. |.+.| ++...+.+.+..
T Consensus 310 l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f--i~i~p~~~~~~~~~~l~~ 370 (459)
T PRK11331 310 LTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSF--IDIEPGFDTPQFRNFLLN 370 (459)
T ss_pred eeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhhe--EEecCCCChHHHHHHHHh
Confidence 012357899999998763 23578899999975 77666 676666665543
No 214
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.02 E-value=2.7e-09 Score=123.02 Aligned_cols=215 Identities=16% Similarity=0.174 Sum_probs=143.5
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCCh
Q 003175 457 TLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASP 536 (842)
Q Consensus 457 ~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~ 536 (842)
+..+.++|....++++.+.+...... ..+++|+|++||||+++|+.+.+..... .-+|+.|||..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~----~~pVLI~GE~GTGKe~lA~~IH~~S~r~-------~~pfv~inC~~l~e- 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARS----DATVLILGESGTGKELVAQAIHQLSGRR-------DFPFVAINCGAIAE- 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----CCcEEEECCCCcCHHHHHHHHHHhcCcC-------CCCEEEeccccCCh-
Confidence 44566899999999999999876653 4679999999999999999987654321 24699999998763
Q ss_pred HHHHHHHHHHHhCCCCC-HHHHHH-HHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------
Q 003175 537 ENIYRVIYEALSGHRVS-WKKALH-SLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK-------- 606 (842)
Q Consensus 537 ~~~~~~i~~~l~g~~~~-~~~~~~-~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~-------- 606 (842)
..+...++|+..+ +..+.. .-...|.. .....|||||++.|....|..|+.+++....
T Consensus 277 ----~lleseLFG~~~gaftga~~~~~~Gl~e~--------A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~ 344 (526)
T TIGR02329 277 ----SLLEAELFGYEEGAFTGARRGGRTGLIEA--------AHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEP 344 (526)
T ss_pred ----hHHHHHhcCCcccccccccccccccchhh--------cCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCce
Confidence 2344455564321 100000 00001111 1346899999999998889999998864321
Q ss_pred CCCcEEEEEEeCCCCCc-----cccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcCc----c-cCcHHHHHHHHH-
Q 003175 607 PNSKLIVIGIANTMDLP-----EKLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKGI----E-AFEKQAIEFASR- 673 (842)
Q Consensus 607 ~~~~vivI~~tn~~dl~-----~~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~~----~-~~~~~~l~~ia~- 673 (842)
....+-+|++++.. +. ..+...+..|+....|.+||+.. +++..++.+.+... . .+++++++.+..
T Consensus 345 ~~~dvRiIaat~~~-l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~ 423 (526)
T TIGR02329 345 VPVDVRVVAATHCA-LTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGV 423 (526)
T ss_pred eeecceEEeccCCC-HHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHH
Confidence 11235677777652 21 23445666788777899999966 67777777776543 1 478888766221
Q ss_pred ---H-HHHHhcCHHHHHHHHHHHHHHH
Q 003175 674 ---K-VAAISGDARRALEICRRAAEIA 696 (842)
Q Consensus 674 ---~-~~~~~Gd~R~al~ll~~A~~~A 696 (842)
+ -....||+|+.-+++.+++..+
T Consensus 424 ~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 424 ADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 1 1236899999999999988764
No 215
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.00 E-value=6.1e-09 Score=119.91 Aligned_cols=222 Identities=19% Similarity=0.186 Sum_probs=143.0
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhc-CCCCCceEEEEecccCCC
Q 003175 457 TLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVES-GSIRPYCFVEVNGLKLAS 535 (842)
Q Consensus 457 ~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~-~~~~~~~~v~in~~~~~s 535 (842)
+..+.++|....++++.+.+...... ..++||+|++||||+++|+++.+.+...... ......+|+.|||..+..
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s----~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e 291 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS----SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE 291 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh
Confidence 34456899999999999998876653 4679999999999999999998762210000 001124699999998764
Q ss_pred hHHHHHHHHHHHhCCCCC-HHHHHH-HHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC-------
Q 003175 536 PENIYRVIYEALSGHRVS-WKKALH-SLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK------- 606 (842)
Q Consensus 536 ~~~~~~~i~~~l~g~~~~-~~~~~~-~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~------- 606 (842)
..+...++|+..+ +..+.+ .-...|.. .....||||||+.|....|..|+.+++....
T Consensus 292 -----~lleseLFG~~~gaftga~~~~~~Gl~e~--------A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~ 358 (538)
T PRK15424 292 -----SLLEAELFGYEEGAFTGSRRGGRAGLFEI--------AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ 358 (538)
T ss_pred -----hhHHHHhcCCccccccCccccccCCchhc--------cCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCc
Confidence 3344455564321 100000 00001111 1346899999999998889999998864321
Q ss_pred -CCCcEEEEEEeCCCCCcc-----ccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcCc----c-cCcHHHHHHHHH
Q 003175 607 -PNSKLIVIGIANTMDLPE-----KLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKGI----E-AFEKQAIEFASR 673 (842)
Q Consensus 607 -~~~~vivI~~tn~~dl~~-----~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~~----~-~~~~~~l~~ia~ 673 (842)
....+-+|++||.. +.. .+...+..|+....|.+||+.. +++..++...+... + .++++++.+..+
T Consensus 359 ~~~~dvRiIaat~~~-L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~ 437 (538)
T PRK15424 359 PVPVDVRVISATHCD-LEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQ 437 (538)
T ss_pred eeccceEEEEecCCC-HHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHH
Confidence 12346788887752 211 2444566788777899999965 67877777777542 1 466666643332
Q ss_pred HH-----HHHhcCHHHHHHHHHHHHHHH
Q 003175 674 KV-----AAISGDARRALEICRRAAEIA 696 (842)
Q Consensus 674 ~~-----~~~~Gd~R~al~ll~~A~~~A 696 (842)
.. ....||+|+.-+++++++.++
T Consensus 438 a~~~L~~y~WPGNvREL~nvier~~i~~ 465 (538)
T PRK15424 438 CETLLLHYDWPGNVRELRNLMERLALFL 465 (538)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 21 236799999999999988754
No 216
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.99 E-value=8.3e-09 Score=121.17 Aligned_cols=208 Identities=19% Similarity=0.159 Sum_probs=136.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHH--HHHHhCCCCCHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVI--YEALSGHRVSWKKALHSLNER 564 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i--~~~l~g~~~~~~~~~~~L~~~ 564 (842)
-+++||.|+||||||++++++.+.+... .+|+.++.. .++..++..+ ...+.+.. ..
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~--------~pfv~i~~~--~t~d~L~G~idl~~~~~~g~-----------~~ 74 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPI--------MPFVELPLG--VTEDRLIGGIDVEESLAGGQ-----------RV 74 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcC--------CCeEecCcc--cchhhcccchhhhhhhhcCc-----------cc
Confidence 4689999999999999999999876531 247777642 2222222111 00000000 00
Q ss_pred hhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC----------CCCCcEEEEEEeCCCCCccccchhhhccC
Q 003175 565 FLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT----------KPNSKLIVIGIANTMDLPEKLLPRISSRM 634 (842)
Q Consensus 565 f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~----------~~~~~vivI~~tn~~dl~~~l~~~l~sR~ 634 (842)
|..+ .+. .....+|+|||++.|....|+.|+++++... ....++.||+++|..+....|.+.+..||
T Consensus 75 ~~~G-~L~--~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf 151 (589)
T TIGR02031 75 TQPG-LLD--EAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRL 151 (589)
T ss_pred CCCC-Cee--eCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhc
Confidence 1111 010 1234699999999999999999999987432 01246889998887543346788999999
Q ss_pred CceeEEecCCCHHHHHHHHHHHhcC----------------------cc--cCcHHHHHHHHHHHHHHhc-CHHHHHHHH
Q 003175 635 GVQRLCFGPYNHQQLQEIISSRLKG----------------------IE--AFEKQAIEFASRKVAAISG-DARRALEIC 689 (842)
Q Consensus 635 ~~~~i~f~p~~~~e~~~Il~~~l~~----------------------~~--~~~~~~l~~ia~~~~~~~G-d~R~al~ll 689 (842)
........+.+.+++.+|+..++.. .. .+++++++++...+....- ..|..+.++
T Consensus 152 ~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~ 231 (589)
T TIGR02031 152 ALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAV 231 (589)
T ss_pred cCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHH
Confidence 8644444555777778888765421 01 4677888888887755443 378888888
Q ss_pred HHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 690 RRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 690 ~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
+.|...|..+ +...|+.+||..|+.-++.
T Consensus 232 r~ArA~Aal~-------------gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 232 RAAKAHAALH-------------GRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHHHHHHHHh-------------CCCCCCHHHHHHHHHHHhh
Confidence 8888888766 4788999999999876653
No 217
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.98 E-value=1.6e-09 Score=118.41 Aligned_cols=213 Identities=19% Similarity=0.206 Sum_probs=141.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
..|+|-...++++.+.+..... .+.++||+|++||||+.+|+.+.. +.... ..-+||.+||..+......
T Consensus 78 ~~LIG~~~~~~~~~eqik~~ap----~~~~vLi~GetGtGKel~A~~iH~-~s~r~-----~~~PFI~~NCa~~~en~~~ 147 (403)
T COG1221 78 DDLIGESPSLQELREQIKAYAP----SGLPVLIIGETGTGKELFARLIHA-LSARR-----AEAPFIAFNCAAYSENLQE 147 (403)
T ss_pred hhhhccCHHHHHHHHHHHhhCC----CCCcEEEecCCCccHHHHHHHHHH-hhhcc-----cCCCEEEEEHHHhCcCHHH
Confidence 4588888899998888887332 368899999999999999998883 33221 1256999999998874322
Q ss_pred HHHHHHHHhCCCCC-HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC--------CCCCc
Q 003175 540 YRVIYEALSGHRVS-WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT--------KPNSK 610 (842)
Q Consensus 540 ~~~i~~~l~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~--------~~~~~ 610 (842)
.. |+|+..+ +..+...=...|..+ ...+||||||+.|....|..|+.+++... .....
T Consensus 148 ~e-----LFG~~kGaftGa~~~k~Glfe~A--------~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~d 214 (403)
T COG1221 148 AE-----LFGHEKGAFTGAQGGKAGLFEQA--------NGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVD 214 (403)
T ss_pred HH-----HhccccceeecccCCcCchheec--------CCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCC
Confidence 22 5554321 000000001122222 44799999999999999999999997532 12456
Q ss_pred EEEEEEeCCCCCccccch--hhhccCCceeEEecCCCH--HHHHHHHHHHhcCc------c--cCcHHHHHHHHHHHHHH
Q 003175 611 LIVIGIANTMDLPEKLLP--RISSRMGVQRLCFGPYNH--QQLQEIISSRLKGI------E--AFEKQAIEFASRKVAAI 678 (842)
Q Consensus 611 vivI~~tn~~dl~~~l~~--~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~~------~--~~~~~~l~~ia~~~~~~ 678 (842)
|-+|++|+. ++.+.+.. .+..|+....|.+||+.. +++...+.+.+... + ...++++..+.. ...
T Consensus 215 VRli~AT~~-~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~--y~~ 291 (403)
T COG1221 215 VRLICATTE-DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLA--YDW 291 (403)
T ss_pred ceeeecccc-CHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh--CCC
Confidence 888887764 55566666 677767667899999965 55666666655422 1 333445543322 225
Q ss_pred hcCHHHHHHHHHHHHHHHHH
Q 003175 679 SGDARRALEICRRAAEIADY 698 (842)
Q Consensus 679 ~Gd~R~al~ll~~A~~~A~~ 698 (842)
.||+|...+++++++..+..
T Consensus 292 pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 292 PGNIRELKNLVERAVAQASG 311 (403)
T ss_pred CCcHHHHHHHHHHHHHHhcc
Confidence 89999999999999887753
No 218
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.98 E-value=1.3e-10 Score=115.33 Aligned_cols=53 Identities=42% Similarity=0.975 Sum_probs=48.6
Q ss_pred ccccccccceeecccc-cccccCccCCCccccccCCCCCCCCCCCCcccccccc
Q 003175 184 EDPEVEECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEA 236 (842)
Q Consensus 184 ~~~~~~~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 236 (842)
.-.++.+|.+||...+ +.+|+||.|+++||++||.|||.+.|+|.|.|..|..
T Consensus 277 qcieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 277 QCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred eeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 4567889999998876 8899999999999999999999999999999999975
No 219
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.98 E-value=1.8e-10 Score=110.15 Aligned_cols=122 Identities=21% Similarity=0.288 Sum_probs=78.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcc
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDG 568 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~ 568 (842)
+++|+||||||||++++.+++.+. ..++.+++...++..+++....-. .+. . .|...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~----------~~~~~i~~~~~~~~~dl~g~~~~~-~~~-~-----------~~~~~ 57 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG----------RPVIRINCSSDTTEEDLIGSYDPS-NGQ-F-----------EFKDG 57 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT----------CEEEEEE-TTTSTHHHHHCEEET--TTT-T-----------CEEE-
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh----------cceEEEEeccccccccceeeeeec-ccc-c-----------ccccc
Confidence 489999999999999999999995 568899999888875555321110 010 0 00000
Q ss_pred cCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC----------CCC------cEEEEEEeCCCC-Cccccchhhh
Q 003175 569 KKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK----------PNS------KLIVIGIANTMD-LPEKLLPRIS 631 (842)
Q Consensus 569 ~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~----------~~~------~vivI~~tn~~d-l~~~l~~~l~ 631 (842)
.+...-.++.|+||||++.....-++.|+.+++.... ... .+.+|+++|..+ ....+.++++
T Consensus 58 -~l~~a~~~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~ 136 (139)
T PF07728_consen 58 -PLVRAMRKGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALL 136 (139)
T ss_dssp -CCCTTHHEEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHH
T ss_pred -cccccccceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHH
Confidence 1111122679999999999886667778888864310 011 389999999876 4457889999
Q ss_pred ccC
Q 003175 632 SRM 634 (842)
Q Consensus 632 sR~ 634 (842)
+||
T Consensus 137 ~Rf 139 (139)
T PF07728_consen 137 DRF 139 (139)
T ss_dssp TT-
T ss_pred hhC
Confidence 997
No 220
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.97 E-value=2e-08 Score=118.22 Aligned_cols=138 Identities=22% Similarity=0.244 Sum_probs=94.7
Q ss_pred cEEEEEecCcccccCChHHHHHhhcCCC------------------CCCCcEEEEEEeCCCCCccccchhhhccCCc--e
Q 003175 578 PCILLIDELDLLVTRNQSVLYNILDWPT------------------KPNSKLIVIGIANTMDLPEKLLPRISSRMGV--Q 637 (842)
Q Consensus 578 ~~IlilDEid~L~~~~~~~L~~ll~~~~------------------~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~--~ 637 (842)
..+|+|||++.|....|..|..+++... .-...+.||+++|. +....+++.+.+||.. -
T Consensus 218 gGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~-~~l~~l~~~l~~rf~~y~v 296 (608)
T TIGR00764 218 KGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNL-DDLEGMHPALRSRIRGYGY 296 (608)
T ss_pred CCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCH-HHHhhcCHHHHHHhcCCeE
Confidence 3699999999999777888888885321 01236788888875 3345788999999971 1
Q ss_pred eEEec---CCCHHHHHHHHHHH---hcC---cccCcHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHh
Q 003175 638 RLCFG---PYNHQQLQEIISSR---LKG---IEAFEKQAIEFASRKVAAI-------SGDARRALEICRRAAEIADYRIK 701 (842)
Q Consensus 638 ~i~f~---p~~~~e~~~Il~~~---l~~---~~~~~~~~l~~ia~~~~~~-------~Gd~R~al~ll~~A~~~A~~~~~ 701 (842)
.+.|+ +.+.+.+.++++.. ++. .+.+++++++.+.+..... +.+.|...++|+.|..+|..+
T Consensus 297 ~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~-- 374 (608)
T TIGR00764 297 EVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSS-- 374 (608)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhc--
Confidence 34554 34555555554433 322 3478888887776544332 345899999999998777644
Q ss_pred hhccCCCcCCcCCCcccHHHHHHHHHHH
Q 003175 702 KQTSNKNSASVGKSLVGMADVEAAIQEM 729 (842)
Q Consensus 702 ~~~~~~~~~~~~~~~It~~dv~~A~~~~ 729 (842)
+...|+.+||.+|++..
T Consensus 375 -----------~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 375 -----------GKVYVTAEHVLKAKKLA 391 (608)
T ss_pred -----------CCceecHHHHHHHHHHH
Confidence 35689999999998754
No 221
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.97 E-value=1.3e-09 Score=130.68 Aligned_cols=210 Identities=13% Similarity=0.188 Sum_probs=143.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChH
Q 003175 458 LPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPE 537 (842)
Q Consensus 458 ~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~ 537 (842)
..+.++|....+.++.+.+..+... ...++|+|++||||+++|+++.+..... .-+|+.|||..+..
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~----~~pvli~Ge~GtGK~~~A~~ih~~s~r~-------~~pfv~vnc~~~~~-- 389 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKS----SFPVLLCGEEGVGKALLAQAIHNESERA-------AGPYIAVNCQLYPD-- 389 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCc----CCCEEEECCCCcCHHHHHHHHHHhCCcc-------CCCeEEEECCCCCh--
Confidence 3467899999999999999887764 4569999999999999999998765422 13599999998763
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCC--C------C
Q 003175 538 NIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKP--N------S 609 (842)
Q Consensus 538 ~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~--~------~ 609 (842)
..+...++|...+... ......|. .....+||||||+.|....|..|+.+++..... + .
T Consensus 390 ---~~~~~elfg~~~~~~~--~~~~g~~~--------~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 390 ---EALAEEFLGSDRTDSE--NGRLSKFE--------LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred ---HHHHHHhcCCCCcCcc--CCCCCcee--------ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 2333344453211000 00000111 123578999999999998899999998643211 1 2
Q ss_pred cEEEEEEeCCCCCc-----cccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcCc-------ccCcHHHHHHHHHHH
Q 003175 610 KLIVIGIANTMDLP-----EKLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKGI-------EAFEKQAIEFASRKV 675 (842)
Q Consensus 610 ~vivI~~tn~~dl~-----~~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~~-------~~~~~~~l~~ia~~~ 675 (842)
.+.||++|+.. +. ..+.+.+..|+....|.+||+.. +++..++...+... ..+++++++.+...
T Consensus 457 ~~riI~~t~~~-l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y- 534 (638)
T PRK11388 457 DVRVIATTTAD-LAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSY- 534 (638)
T ss_pred eEEEEEeccCC-HHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcC-
Confidence 56788887752 21 24455666778777899999965 56777777666532 15788888887653
Q ss_pred HHHhcCHHHHHHHHHHHHHHH
Q 003175 676 AAISGDARRALEICRRAAEIA 696 (842)
Q Consensus 676 ~~~~Gd~R~al~ll~~A~~~A 696 (842)
...||+|+..+++++|+..+
T Consensus 535 -~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 535 -RWPGNDFELRSVIENLALSS 554 (638)
T ss_pred -CCCChHHHHHHHHHHHHHhC
Confidence 35799999999999888654
No 222
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.97 E-value=5.6e-09 Score=126.01 Aligned_cols=212 Identities=17% Similarity=0.202 Sum_probs=143.6
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHH
Q 003175 459 PKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPEN 538 (842)
Q Consensus 459 p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~ 538 (842)
...++|+...++.+.+.+..+... ..+++|+|++|||||++|+++....... ..+|+.+||..+..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~----~~pVLI~GE~GTGK~~lA~~ih~~s~r~-------~~~~v~i~c~~~~~--- 440 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQS----DSTVLILGETGTGKELIARAIHNLSGRN-------NRRMVKMNCAAMPA--- 440 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCC----CCCEEEECCCCcCHHHHHHHHHHhcCCC-------CCCeEEEecccCCh---
Confidence 346999999999999998876643 4679999999999999999987765421 24699999998653
Q ss_pred HHHHHHHHHhCCCCC-HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------CCC
Q 003175 539 IYRVIYEALSGHRVS-WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--------PNS 609 (842)
Q Consensus 539 ~~~~i~~~l~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--------~~~ 609 (842)
..+...++|+..+ +......-...|..+ ...+||||||+.|....|..|..+++.... ...
T Consensus 441 --~~~~~~lfg~~~~~~~g~~~~~~g~le~a--------~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~ 510 (686)
T PRK15429 441 --GLLESDLFGHERGAFTGASAQRIGRFELA--------DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQT 510 (686)
T ss_pred --hHhhhhhcCcccccccccccchhhHHHhc--------CCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccc
Confidence 2223334453211 100000000112111 346899999999998889889988864311 124
Q ss_pred cEEEEEEeCCCCCc-----cccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcCc--------ccCcHHHHHHHHHH
Q 003175 610 KLIVIGIANTMDLP-----EKLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKGI--------EAFEKQAIEFASRK 674 (842)
Q Consensus 610 ~vivI~~tn~~dl~-----~~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~~--------~~~~~~~l~~ia~~ 674 (842)
.+-+|++++. ++. ..+...+..|+....|.+||+.. +++..++...+... ..+++++++.+...
T Consensus 511 ~~RiI~~t~~-~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y 589 (686)
T PRK15429 511 DVRLIAATNR-DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNM 589 (686)
T ss_pred eEEEEEeCCC-CHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 5778888765 221 23445566788777899999965 67776776665432 25889999887654
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHH
Q 003175 675 VAAISGDARRALEICRRAAEIAD 697 (842)
Q Consensus 675 ~~~~~Gd~R~al~ll~~A~~~A~ 697 (842)
...||+|+.-+++++|+..+.
T Consensus 590 --~WPGNvrEL~~~i~~a~~~~~ 610 (686)
T PRK15429 590 --EWPGNVRELENVIERAVLLTR 610 (686)
T ss_pred --CCCCcHHHHHHHHHHHHHhCC
Confidence 479999999999999987653
No 223
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=2.5e-08 Score=105.83 Aligned_cols=178 Identities=16% Similarity=0.246 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhc----------------CCCCCceEEEEecc
Q 003175 468 EMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVES----------------GSIRPYCFVEVNGL 531 (842)
Q Consensus 468 e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~----------------~~~~~~~~v~in~~ 531 (842)
....+.+.|..++..+. .++++||+|+ +||+++++.+++.+.+.... +..|++ .+|..
T Consensus 6 ~q~~~~~~L~~~~~~~r-l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~--~~i~p- 79 (290)
T PRK07276 6 KQPKVFQRFQTILEQDR-LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDV--TVIEP- 79 (290)
T ss_pred HHHHHHHHHHHHHHcCC-cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCe--eeecC-
Confidence 34456666777776665 6889999995 68999999999998865321 111221 11111
Q ss_pred cCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcE
Q 003175 532 KLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKL 611 (842)
Q Consensus 532 ~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~v 611 (842)
.|...+.++..+.+...... ...+...|+|||++|.|.....+.|+++++.+ ..+.
T Consensus 80 ----------------~~~~I~idqIR~l~~~~~~~-----p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEP---p~~t 135 (290)
T PRK07276 80 ----------------QGQVIKTDTIRELVKNFSQS-----GYEGKQQVFIIKDADKMHVNAANSLLKVIEEP---QSEI 135 (290)
T ss_pred ----------------CCCcCCHHHHHHHHHHHhhC-----cccCCcEEEEeehhhhcCHHHHHHHHHHhcCC---CCCe
Confidence 02223344444433333221 12346689999999999988899999999854 5567
Q ss_pred EEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003175 612 IVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICR 690 (842)
Q Consensus 612 ivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~ 690 (842)
++|.+|+. ++.++|.++||+. .|.|++ +.+++.++|... .++.+..+. ++...|++.+|+.++.
T Consensus 136 ~~iL~t~~---~~~lLpTI~SRcq--~i~f~~-~~~~~~~~L~~~-----g~~~~~a~~----la~~~~s~~~A~~l~~ 199 (290)
T PRK07276 136 YIFLLTND---ENKVLPTIKSRTQ--IFHFPK-NEAYLIQLLEQK-----GLLKTQAEL----LAKLAQSTSEAEKLAQ 199 (290)
T ss_pred EEEEEECC---hhhCchHHHHcce--eeeCCC-cHHHHHHHHHHc-----CCChHHHHH----HHHHCCCHHHHHHHhC
Confidence 77777776 5889999999994 599987 788888887632 233333233 3344677888777763
No 224
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.96 E-value=1.2e-08 Score=121.31 Aligned_cols=139 Identities=24% Similarity=0.313 Sum_probs=99.3
Q ss_pred CcEEEEEecCcccccCChHHHHHhhcCCC----------CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCC-C
Q 003175 577 RPCILLIDELDLLVTRNQSVLYNILDWPT----------KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPY-N 645 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~~~~L~~ll~~~~----------~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~-~ 645 (842)
...||+|||++.|....|+.|+.+++... ....++.||+++|..+ ..+.+.|.+||.+ .|.++.. +
T Consensus 126 ~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~e--g~l~~~L~dR~~l-~i~v~~~~~ 202 (633)
T TIGR02442 126 HRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEE--GDLRPQLLDRFGL-CVDVAAPRD 202 (633)
T ss_pred CCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCC--CCCCHHHHhhcce-EEEccCCCc
Confidence 34699999999999988999999997431 1135689999888521 3467789999984 5555544 4
Q ss_pred HHHHHHHHHHHhcC------------------------------cccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 003175 646 HQQLQEIISSRLKG------------------------------IEAFEKQAIEFASRKVAAISG-DARRALEICRRAAE 694 (842)
Q Consensus 646 ~~e~~~Il~~~l~~------------------------------~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~ 694 (842)
.++..+|+..++.. .-.+++++++++...+....- ..|..+.+++.|..
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara 282 (633)
T TIGR02442 203 PEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARA 282 (633)
T ss_pred hHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 56666666553220 014567778888777755443 47877888888888
Q ss_pred HHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 695 IADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 695 ~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
+|..+ +...|+.+||..|+.-+..
T Consensus 283 ~AaL~-------------gr~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 283 LAALD-------------GRRRVTAEDVREAAELVLP 306 (633)
T ss_pred HHHHc-------------CCCcCCHHHHHHHHHHHhh
Confidence 88766 4788999999999887664
No 225
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.94 E-value=9.3e-09 Score=119.29 Aligned_cols=229 Identities=17% Similarity=0.158 Sum_probs=138.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcC----Cc--ccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEE---ec
Q 003175 460 KFLPCRNKEMEDITAFIKGATCD----DQ--CLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEV---NG 530 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~----~~--~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~i---n~ 530 (842)
+.+.|.+.....|.-.+-..... +. ...-++||+|+||||||++++.+++..... .|+.. ++
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~---------~~~~~~~~~~ 273 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA---------VYTTGKGSSA 273 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc---------eEcCCCCCCc
Confidence 34668777655554444331100 00 012379999999999999999998876421 12211 11
Q ss_pred ccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC----
Q 003175 531 LKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK---- 606 (842)
Q Consensus 531 ~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~---- 606 (842)
..+.. ..+.+...|.. .+..+ .+ ......+++|||+|.+....|..|+..|+....
T Consensus 274 ~~l~~-----~~~~~~~~g~~------------~~~~G-~l--~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k 333 (509)
T smart00350 274 VGLTA-----AVTRDPETREF------------TLEGG-AL--VLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAK 333 (509)
T ss_pred CCccc-----cceEccCcceE------------EecCc-cE--EecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEe
Confidence 11111 00000001100 00000 00 011346999999999998889999999864321
Q ss_pred ------CCCcEEEEEEeCCCCCc----------cccchhhhccCCceeEEecCCCHHHHHHHHHHHhcC-----------
Q 003175 607 ------PNSKLIVIGIANTMDLP----------EKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKG----------- 659 (842)
Q Consensus 607 ------~~~~vivI~~tn~~dl~----------~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~----------- 659 (842)
-..++.||+++|...-. -.|.+.+.|||+...+.+..++.+.-.+|+.+.+..
T Consensus 334 ~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~ 413 (509)
T smart00350 334 AGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEA 413 (509)
T ss_pred CCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCcccccc
Confidence 13678999999975321 157789999998756667788888877777764321
Q ss_pred ---------------------cccCcHHHHHHHHHHHHHHh-------------cCHHHHHHHHHHHHHHHHHHHhhhcc
Q 003175 660 ---------------------IEAFEKQAIEFASRKVAAIS-------------GDARRALEICRRAAEIADYRIKKQTS 705 (842)
Q Consensus 660 ---------------------~~~~~~~~l~~ia~~~~~~~-------------Gd~R~al~ll~~A~~~A~~~~~~~~~ 705 (842)
.+.+++++.+++.+.+.... -.+|..+.+++.|-..|..+
T Consensus 414 ~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~------ 487 (509)
T smart00350 414 DEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMR------ 487 (509)
T ss_pred ccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHc------
Confidence 02456667776665543321 15677777888777777766
Q ss_pred CCCcCCcCCCcccHHHHHHHHHHHh
Q 003175 706 NKNSASVGKSLVGMADVEAAIQEMF 730 (842)
Q Consensus 706 ~~~~~~~~~~~It~~dv~~A~~~~~ 730 (842)
.+..|+.+||..|+.-+.
T Consensus 488 -------~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 488 -------LSDVVEEADVEEAIRLLR 505 (509)
T ss_pred -------CCCccCHHHHHHHHHHHH
Confidence 367899999999987543
No 226
>cd08768 Cdc6_C Winged-helix domain of essential DNA replication protein Cell division control protein (Cdc6), which mediates DNA binding. This model characterizes the winged-helix, C-terminal domain of the Cell division control protein (Cdc6_C). Cdc6 (also known as Cell division cycle 6 or Cdc18) functions as a regulator at the early stages of DNA replication, by helping to recruit and load the Minichromosome Maintenance Complex (MCM) onto DNA and may have additional roles in the control of mitotic entry. Precise duplication of chromosomal DNA is required for genomic stability during replication. Cdc6 has an essential role in DNA replication and irregular expression of Cdc6 may lead to genomic instability. Cdc6 over-expression is observed in many cancerous lesions. DNA replication begins when an origin recognition complex (ORC) binds to a replication origin site on the chromatin. Studies indicate that Cdc6 interacts with ORC through the Orc1 subunit, and that this association increases
Probab=98.94 E-value=2.3e-09 Score=93.55 Aligned_cols=84 Identities=23% Similarity=0.253 Sum_probs=75.1
Q ss_pred chHHHHHHHHHHHHHHHcCCcceeHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhcccceEEecC---CCCCCceEEEE
Q 003175 742 SKLSKIFLTAMVYELYKTGMGETNFEKLAMTVSSLCTSNGEIFPSWDALLRVGCKLGECRIILCEP---GSRHRLQKLQL 818 (842)
Q Consensus 742 s~~~kliL~a~~~~~~~~g~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~~li~~~~---g~~~r~~~i~l 818 (842)
|.|+|++|+|++.+....|..++++++||+.|+.+|+..+..+.++..+.+++..|..+|+|.... |.+|+++.++|
T Consensus 1 p~~~Kl~L~Al~~~~~~~~~~~~~~~~vy~~Y~~~c~~~~~~~l~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l 80 (87)
T cd08768 1 PLHQKLVLLALLLLFKRGGEEEATTGEVYEVYEELCEEIGVDPLTQRRISDLLSELEMLGLLETEVSSKGRRGRTRKISL 80 (87)
T ss_pred CchHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCeEEEEecCCCCceEEEEEe
Confidence 578999999999988777778899999999999999999999999999999999999999999764 34466999999
Q ss_pred ecCHHHH
Q 003175 819 NFPSDDV 825 (842)
Q Consensus 819 ~~~~~dv 825 (842)
++++++|
T Consensus 81 ~~~~~~v 87 (87)
T cd08768 81 NVDPDDV 87 (87)
T ss_pred cCCcccC
Confidence 9998875
No 227
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.94 E-value=2.6e-09 Score=118.54 Aligned_cols=214 Identities=17% Similarity=0.202 Sum_probs=147.4
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCC
Q 003175 455 LATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLA 534 (842)
Q Consensus 455 ~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~ 534 (842)
..|..+.++|...++.++.......... ..++||.|.+||||..+|+++-+.-.+. .-+||.|||..+.
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~A~t----dstVLi~GESGTGKElfA~~IH~~S~R~-------~~PFIaiNCaAiP 308 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRIAKT----DSTVLILGESGTGKELFARAIHNLSPRA-------NGPFIAINCAAIP 308 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhhcCC----CCcEEEecCCCccHHHHHHHHHhcCccc-------CCCeEEEecccCC
Confidence 3456678999999999998888776543 5789999999999999999887765543 2469999999876
Q ss_pred ChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCC----CCCCcEEEEEecCcccccCChHHHHHhhcCC------
Q 003175 535 SPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGK----EDDRPCILLIDELDLLVTRNQSVLYNILDWP------ 604 (842)
Q Consensus 535 s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~----~~~~~~IlilDEid~L~~~~~~~L~~ll~~~------ 604 (842)
. ..|.+.|+|...+ .|..+.+-++ .-.+..-||||||..|...-|.-|+.++..-
T Consensus 309 e-----~LlESELFGye~G----------AFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG 373 (560)
T COG3829 309 E-----TLLESELFGYEKG----------AFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVG 373 (560)
T ss_pred H-----HHHHHHHhCcCCc----------cccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecC
Confidence 4 4555666664322 1222211000 0124468999999999877788888888532
Q ss_pred --CCCCCcEEEEEEeCCCCCcc-----ccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcC--------cccCcHHH
Q 003175 605 --TKPNSKLIVIGIANTMDLPE-----KLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKG--------IEAFEKQA 667 (842)
Q Consensus 605 --~~~~~~vivI~~tn~~dl~~-----~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~--------~~~~~~~~ 667 (842)
......|-||++||.. +.+ .|-..|--|+....|.+||+-. +++..+....+.. ...+++++
T Consensus 374 ~t~~~~vDVRIIAATN~n-L~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a 452 (560)
T COG3829 374 GTKPIPVDVRIIAATNRN-LEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDA 452 (560)
T ss_pred CCCceeeEEEEEeccCcC-HHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHH
Confidence 1224568999999972 211 2223344477666688899844 5665555555543 23688999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 003175 668 IEFASRKVAAISGDARRALEICRRAAEIAD 697 (842)
Q Consensus 668 l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~ 697 (842)
+.++.+. .+.||+|..-+++.+++.++.
T Consensus 453 ~~~L~~y--~WPGNVRELeNviER~v~~~~ 480 (560)
T COG3829 453 LALLLRY--DWPGNVRELENVIERAVNLVE 480 (560)
T ss_pred HHHHHhC--CCCchHHHHHHHHHHHHhccC
Confidence 8887654 479999999999999997654
No 228
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.92 E-value=1.2e-08 Score=112.35 Aligned_cols=216 Identities=17% Similarity=0.262 Sum_probs=116.6
Q ss_pred CCCcHHHHHHHHHHHHH--hhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEE-EecccCCChHH
Q 003175 462 LPCRNKEMEDITAFIKG--ATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVE-VNGLKLASPEN 538 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~--~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~-in~~~~~s~~~ 538 (842)
|.-+.+-+.+|..+|.. ....+ ..++.+||+||+|+||||+++.++++++-+ +++ +|...+..+..
T Consensus 84 LAVHkkKI~eVk~WL~~~~~~~~~-l~~~iLLltGPsGcGKSTtvkvLskelg~~----------~~Ew~Npi~~~~~~~ 152 (634)
T KOG1970|consen 84 LAVHKKKISEVKQWLKQVAEFTPK-LGSRILLLTGPSGCGKSTTVKVLSKELGYQ----------LIEWSNPINLKEPEN 152 (634)
T ss_pred HhhhHHhHHHHHHHHHHHHHhccC-CCceEEEEeCCCCCCchhHHHHHHHhhCce----------eeeecCCcccccccc
Confidence 55556677888888872 22222 236789999999999999999999999843 333 23333222111
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhhcc------cCC-CCCCCCcEEEEEecCcccccC-ChHHHHHhhcCC-CCCCC
Q 003175 539 IYRVIYEALSGHRVSWKKALHSLNERFLDG------KKI-GKEDDRPCILLIDELDLLVTR-NQSVLYNILDWP-TKPNS 609 (842)
Q Consensus 539 ~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~------~~~-~~~~~~~~IlilDEid~L~~~-~~~~L~~ll~~~-~~~~~ 609 (842)
+. ..-.+....+...+..++..+... ... ......+.+|+|||+-..... ....+.++|... .....
T Consensus 153 ~h----~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~ 228 (634)
T KOG1970|consen 153 LH----NETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRC 228 (634)
T ss_pred cc----ccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCC
Confidence 10 000011101111111111111100 000 112345679999999887765 333333333321 23345
Q ss_pred cEEEEEEeCCC----CCcccc-chhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcH---HHHHHHHHHHHHHhc
Q 003175 610 KLIVIGIANTM----DLPEKL-LPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEK---QAIEFASRKVAAISG 680 (842)
Q Consensus 610 ~vivI~~tn~~----dl~~~l-~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~---~~l~~ia~~~~~~~G 680 (842)
++||| +|+.. +..+++ ...+.-+.++..|.|.|....-+...|...+.... ...+ .....+-.++.+..|
T Consensus 229 PlIf~-iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~G 307 (634)
T KOG1970|consen 229 PLIFI-ITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSGG 307 (634)
T ss_pred cEEEE-EeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhcCc
Confidence 55554 55432 122222 22333344446799999999988888888775432 1110 112223335677899
Q ss_pred CHHHHHHHHHHHH
Q 003175 681 DARRALEICRRAA 693 (842)
Q Consensus 681 d~R~al~ll~~A~ 693 (842)
|+|.|++.|+...
T Consensus 308 DIRsAInsLQlss 320 (634)
T KOG1970|consen 308 DIRSAINSLQLSS 320 (634)
T ss_pred cHHHHHhHhhhhc
Confidence 9999999988764
No 229
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.91 E-value=8.1e-10 Score=101.68 Aligned_cols=87 Identities=17% Similarity=0.229 Sum_probs=69.6
Q ss_pred hhhhhhhhceeeccCC---ceEEEEEeecCCcccccC----CCCCcccccccccCCcc---ccccchhccceeeeCcccc
Q 003175 266 DLWAANIQSMWKEVDG---NYWCRVFWYMIPEETAAG----RQPHNLRRELYRTNDFA---NIEMESIIRHCSVMSPKDF 335 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~g---~~~~~~~w~~~peEt~~~----~~~~~~~~Evf~s~~~d---~~~~~~I~~kc~V~~~~~y 335 (842)
..|+|+|.+||++.+| ...+.|+||+||+|..+. -.+....+|||++++.+ ++.+++|+|+|.|++.+.|
T Consensus 19 ~~yVAkI~~i~e~~~~~~~~~~~~VqWy~R~~Ev~~~~~~~~~~~~~~~EvF~~~~~~~~~~i~~etI~gkc~V~~~~~y 98 (128)
T cd04719 19 GPDVARILHLYEDGNEDDDPKRAIVQWFSRPSEVPKNKRKLLGREPHSQEVFFYSRSSCDNDIDAETIIGKVRVEPVEPK 98 (128)
T ss_pred CCcEeeehhhhccccCCcccceEEEEcccChHHccccchhhccCCCCCcEEEEecCccccCcEeHHHcccEEEEEEcCCc
Confidence 4689999999999776 568999999999997432 12345799999999985 7999999999999999999
Q ss_pred cccc-c---CCCCEEEEeeEE
Q 003175 336 VKAN-D---QGDDIFLCEYEY 352 (842)
Q Consensus 336 ~~~~-~---~~~~~~~C~~~y 352 (842)
.... . .+...|++.|..
T Consensus 99 ~~l~~~~~~~~~~~F~r~~~~ 119 (128)
T cd04719 99 TDLPETKKKTGGPLFVKRYWD 119 (128)
T ss_pred cchhhhccccCceEEEEEEec
Confidence 8665 2 246667777663
No 230
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=7.7e-08 Score=103.03 Aligned_cols=176 Identities=13% Similarity=0.178 Sum_probs=117.2
Q ss_pred HHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHh----hcCCCCCceEEEEe--cccCCChHHHHHHHH
Q 003175 471 DITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEV----ESGSIRPYCFVEVN--GLKLASPENIYRVIY 544 (842)
Q Consensus 471 ~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~----~~~~~~~~~~v~in--~~~~~s~~~~~~~i~ 544 (842)
.+..+|...+..+. .++..||+|+.|.||+.+++.+++.+.+.. ..+..| ..++.++ +..
T Consensus 3 ~~~~~l~~~i~~~~-l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p-~n~~~~d~~g~~------------ 68 (299)
T PRK07132 3 NWIKFLDNSATQNK-ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELP-ANIILFDIFDKD------------ 68 (299)
T ss_pred hHHHHHHHHHHhCC-CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCC-cceEEeccCCCc------------
Confidence 35566777777664 577888999999999999999999986542 111222 2344444 321
Q ss_pred HHHhCCCCCHHHHHHHHHHHhhcccCCCC-CCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCc
Q 003175 545 EALSGHRVSWKKALHSLNERFLDGKKIGK-EDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLP 623 (842)
Q Consensus 545 ~~l~g~~~~~~~~~~~L~~~f~~~~~~~~-~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~ 623 (842)
.+.++........- ... ..+...|+|||++|.+....++.|+.+++. +....++|.+++. +
T Consensus 69 -------i~vd~Ir~l~~~~~-----~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE---Pp~~t~~il~~~~---~ 130 (299)
T PRK07132 69 -------LSKSEFLSAINKLY-----FSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE---PPKDTYFLLTTKN---I 130 (299)
T ss_pred -------CCHHHHHHHHHHhc-----cCCcccCCceEEEEecccccCHHHHHHHHHHhhC---CCCCeEEEEEeCC---h
Confidence 22223332222221 111 113678999999999988788899999985 4566777777765 4
Q ss_pred cccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHH
Q 003175 624 EKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEIC 689 (842)
Q Consensus 624 ~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll 689 (842)
+.+.+.++||+. .+.|.+++.+++.+.|..+ ..+++...+++ ..+|++.+|+.++
T Consensus 131 ~kll~TI~SRc~--~~~f~~l~~~~l~~~l~~~-----~~~~~~a~~~a----~~~~~~~~a~~~~ 185 (299)
T PRK07132 131 NKVLPTIVSRCQ--VFNVKEPDQQKILAKLLSK-----NKEKEYNWFYA----YIFSNFEQAEKYI 185 (299)
T ss_pred HhChHHHHhCeE--EEECCCCCHHHHHHHHHHc-----CCChhHHHHHH----HHcCCHHHHHHHH
Confidence 889999999994 5999999999999888765 13444434433 3355677776664
No 231
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=98.88 E-value=7e-10 Score=117.27 Aligned_cols=55 Identities=35% Similarity=0.828 Sum_probs=47.2
Q ss_pred CCCccccccccceeecccccccccCcc--CC-CccccccCCCCCCCCCCCCcccccccccc
Q 003175 181 SDEEDPEVEECRICFRAGRSVMLECDD--CL-GGFHLKCLKPPLKEVPEGEWVCEFCEARK 238 (842)
Q Consensus 181 ~~~~~~~~~~C~~C~~~~~~~~l~Cd~--C~-~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 238 (842)
...+.++..|| +|.....+.||.||+ |+ .|||+.|+| |...|.|.||||.|....
T Consensus 212 ~~~d~~e~~yC-~Cnqvsyg~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 212 EAVDPDEPTYC-ICNQVSYGKMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred cccCCCCCEEE-EecccccccccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhhh
Confidence 34556677899 888766677999996 99 999999999 999999999999998754
No 232
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.87 E-value=1.9e-08 Score=115.21 Aligned_cols=137 Identities=14% Similarity=0.145 Sum_probs=94.5
Q ss_pred CcEEEEEecCcccccCChHHHHHhhcCCCC----------CCCcEEEEEEeCCC-----C---------------Ccccc
Q 003175 577 RPCILLIDELDLLVTRNQSVLYNILDWPTK----------PNSKLIVIGIANTM-----D---------------LPEKL 626 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~~~~L~~ll~~~~~----------~~~~vivI~~tn~~-----d---------------l~~~l 626 (842)
...+|||||++.|....++.|++.++.... ...++.+|+++|.- + +..++
T Consensus 295 ~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~i 374 (499)
T TIGR00368 295 HNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKL 374 (499)
T ss_pred CCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhc
Confidence 447999999999988889999998864321 13578999999963 1 12367
Q ss_pred chhhhccCCceeEEecCCCHHHHH-------------HH------HHHHhcCc-----c------------cCcHHHHHH
Q 003175 627 LPRISSRMGVQRLCFGPYNHQQLQ-------------EI------ISSRLKGI-----E------------AFEKQAIEF 670 (842)
Q Consensus 627 ~~~l~sR~~~~~i~f~p~~~~e~~-------------~I------l~~~l~~~-----~------------~~~~~~l~~ 670 (842)
...|.+||++ .+.+++++.+++. .| ...|++.. + .+++++.++
T Consensus 375 s~pllDR~dl-~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~ 453 (499)
T TIGR00368 375 SGPFLDRIDL-SVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDAND 453 (499)
T ss_pred cHhHHhhCCE-EEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHH
Confidence 8899999994 7888887665541 12 22222211 0 124555555
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHH
Q 003175 671 ASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQ 727 (842)
Q Consensus 671 ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~ 727 (842)
+...+....=.+|....+++-|..+|..+ +...|+.+||.+|++
T Consensus 454 l~~a~~~~~lS~R~~~rilrvArTiAdL~-------------g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 454 LEGALNKLGLSSRATHRILKVARTIADLK-------------EEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhhc-------------CCCCCCHHHHHHHHh
Confidence 55554444447888888999999999876 467899999999985
No 233
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.87 E-value=6.1e-09 Score=113.97 Aligned_cols=212 Identities=22% Similarity=0.255 Sum_probs=143.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChH
Q 003175 458 LPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPE 537 (842)
Q Consensus 458 ~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~ 537 (842)
-...++|+...+.++.+.+.-.... ...+||.|.+||||-..|++|-+.-.+. .-+||++||..+..
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~S----d~tVLi~GETGtGKElvAraIH~~S~R~-------~kPfV~~NCAAlPe-- 287 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKS----DSTVLIRGETGTGKELVARAIHQLSPRR-------DKPFVKLNCAALPE-- 287 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcC----CCeEEEecCCCccHHHHHHHHHhhCccc-------CCCceeeeccccch--
Confidence 3456899999999999999876654 4779999999999999999876655432 14599999998774
Q ss_pred HHHHHHHHHHhCCCCC-HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------CC
Q 003175 538 NIYRVIYEALSGHRVS-WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--------PN 608 (842)
Q Consensus 538 ~~~~~i~~~l~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--------~~ 608 (842)
+.+.+.|+|+..+ |..+...=...|.-+ ...-||||||..|.-.-|..|+..+..... -.
T Consensus 288 ---sLlESELFGHeKGAFTGA~~~r~GrFElA--------dGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ik 356 (550)
T COG3604 288 ---SLLESELFGHEKGAFTGAINTRRGRFELA--------DGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIK 356 (550)
T ss_pred ---HHHHHHHhcccccccccchhccCcceeec--------CCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeE
Confidence 5666777786532 222222212223222 346899999999988878888888754321 12
Q ss_pred CcEEEEEEeCCCCCcc-----ccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcC--------cccCcHHHHHHHHH
Q 003175 609 SKLIVIGIANTMDLPE-----KLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKG--------IEAFEKQAIEFASR 673 (842)
Q Consensus 609 ~~vivI~~tn~~dl~~-----~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~--------~~~~~~~~l~~ia~ 673 (842)
..|-||++||+ |+.+ .+-..+.-|++..-|.+||+-. +++--...+.+++ .-.+++++++.+..
T Consensus 357 VDVRiIAATNR-DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 357 VDVRVIAATNR-DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred EEEEEEeccch-hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 35789999997 2221 2223334466655577888743 3333333333322 12688899988765
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHH
Q 003175 674 KVAAISGDARRALEICRRAAEIA 696 (842)
Q Consensus 674 ~~~~~~Gd~R~al~ll~~A~~~A 696 (842)
. .+.||+|...+++.+|+.+|
T Consensus 436 y--~wPGNVRELen~veRavlla 456 (550)
T COG3604 436 Y--EWPGNVRELENVVERAVLLA 456 (550)
T ss_pred C--CCCCcHHHHHHHHHHHHHHh
Confidence 4 46899999999999999988
No 234
>PRK15115 response regulator GlrR; Provisional
Probab=98.86 E-value=1.1e-08 Score=117.70 Aligned_cols=209 Identities=17% Similarity=0.246 Sum_probs=134.5
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHH
Q 003175 461 FLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIY 540 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~ 540 (842)
.+.+....+.++.+.+...... ...++|+|++|||||++++.+....... ...|+.+||..+..
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~----~~~vli~Ge~GtGk~~lA~~ih~~s~r~-------~~~f~~i~c~~~~~----- 198 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQS----DVSVLINGQSGTGKEILAQAIHNASPRA-------SKPFIAINCGALPE----- 198 (444)
T ss_pred cccccCHHHHHHHHHHHhhccC----CCeEEEEcCCcchHHHHHHHHHHhcCCC-------CCCeEEEeCCCCCH-----
Confidence 4667777777766666554432 4678999999999999999887764421 14699999998743
Q ss_pred HHHHHHHhCCCCC-HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------CCCcE
Q 003175 541 RVIYEALSGHRVS-WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--------PNSKL 611 (842)
Q Consensus 541 ~~i~~~l~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--------~~~~v 611 (842)
..+...++|+..+ +..........|. .....+|||||+|.|....|..|+.+++.... ....+
T Consensus 199 ~~~~~~lfg~~~~~~~~~~~~~~g~~~--------~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~ 270 (444)
T PRK15115 199 QLLESELFGHARGAFTGAVSNREGLFQ--------AAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDV 270 (444)
T ss_pred HHHHHHhcCCCcCCCCCCccCCCCcEE--------ECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeE
Confidence 2233344454221 0000000000111 11346899999999999889999998864321 11356
Q ss_pred EEEEEeCCCCCcc-----ccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcCc--------ccCcHHHHHHHHHHHH
Q 003175 612 IVIGIANTMDLPE-----KLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKGI--------EAFEKQAIEFASRKVA 676 (842)
Q Consensus 612 ivI~~tn~~dl~~-----~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~~--------~~~~~~~l~~ia~~~~ 676 (842)
.+|++++. ++.. .+...+..|+....|.+||+.. +++..++...+... ..+++++++.+...
T Consensus 271 rii~~~~~-~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~-- 347 (444)
T PRK15115 271 RIISATHR-DLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA-- 347 (444)
T ss_pred EEEEeCCC-CHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--
Confidence 78877764 2222 3445666677767788999865 56666666655422 24889999887654
Q ss_pred HHhcCHHHHHHHHHHHHHHH
Q 003175 677 AISGDARRALEICRRAAEIA 696 (842)
Q Consensus 677 ~~~Gd~R~al~ll~~A~~~A 696 (842)
...||+|+..+++++|+..+
T Consensus 348 ~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 348 SWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred CCCChHHHHHHHHHHHHHhC
Confidence 36899999999999988754
No 235
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity []. ; PDB: 2QBY_A 2V1U_A 1W5T_A 1W5S_B 1FNN_B.
Probab=98.86 E-value=1.2e-08 Score=88.36 Aligned_cols=81 Identities=27% Similarity=0.263 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCCcceeHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhcccceEEec---CC-CCCCceEEEEecCHHH
Q 003175 749 LTAMVYELYKTGMGETNFEKLAMTVSSLCTSNGEIFPSWDALLRVGCKLGECRIILCE---PG-SRHRLQKLQLNFPSDD 824 (842)
Q Consensus 749 L~a~~~~~~~~g~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~~li~~~---~g-~~~r~~~i~l~~~~~d 824 (842)
|+|++.+....+..++++++||+.|..+|+..+..+.++..+.+++..|..+|+|... .| .+|+++.|+|.+++++
T Consensus 1 L~Al~~~~~~~~~~~~~~~~vy~~Y~~lc~~~~~~pls~~r~~~~l~eL~~~gli~~~~~~~G~~~G~~~~~~l~~d~~~ 80 (85)
T PF09079_consen 1 LLALAALLKEGGKEEVTTGEVYEVYEELCESLGVDPLSYRRFSDYLSELEMLGLIESERKGRGRGRGRTREISLNVDPED 80 (85)
T ss_dssp HHHHHHHHHHCTSSSEEHHHHHHHHHHHHHHTTS----HHHHHHHHHHHHHTTSEEEEEEE-TT-CTEEEEEEECSSSHH
T ss_pred CHHHHHHHHhCCCCceeHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEEeecCCCCCCeEEEEEecCCHHH
Confidence 6788887777777899999999999999999999999999999999999999999875 46 5899999999999999
Q ss_pred HHHHH
Q 003175 825 VAFAL 829 (842)
Q Consensus 825 v~~al 829 (842)
|.+||
T Consensus 81 v~~aL 85 (85)
T PF09079_consen 81 VLEAL 85 (85)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99986
No 236
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.84 E-value=5.4e-08 Score=105.02 Aligned_cols=165 Identities=19% Similarity=0.230 Sum_probs=101.2
Q ss_pred cHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCc-eEEEEecccCCChHHHHHHH
Q 003175 465 RNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPY-CFVEVNGLKLASPENIYRVI 543 (842)
Q Consensus 465 Re~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~-~~v~in~~~~~s~~~~~~~i 543 (842)
||.++++|.+.|...- . ..+.+.|+|.+|+|||+||..+++..... . . | .++.++.....+...++..|
T Consensus 1 re~~~~~l~~~L~~~~-~---~~~~v~I~G~~G~GKT~LA~~~~~~~~~~--~--~--f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS-N---EVRVVAIVGMGGIGKTTLARQVARDLRIK--N--R--FDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp -HHHHHHHHHHHHTTT-T---SSEEEEEEESTTSSHHHHHHHHHCHHHHC--C--C--CTEEEEEEEES-SCCHHHHHHH
T ss_pred CHHHHHHHHHHhhCCC-C---CeEEEEEEcCCcCCcceeeeecccccccc--c--c--cccccccccccccccccccccc
Confidence 7899999999998744 2 26889999999999999999999875421 1 1 2 25567776666667888888
Q ss_pred HHHHhCCC------CCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEe
Q 003175 544 YEALSGHR------VSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIA 617 (842)
Q Consensus 544 ~~~l~g~~------~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~t 617 (842)
...+.... .........|.+.+. +++++||||+++... .+..+............||.||
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~---------~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~~~kilvTT 136 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRELLK---------DKRCLLVLDDVWDEE-----DLEELREPLPSFSSGSKILVTT 136 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHHHHC---------CTSEEEEEEEE-SHH-----HH-------HCHHSS-EEEEEE
T ss_pred cccccccccccccccccccccccchhhhc---------cccceeeeeeecccc-----cccccccccccccccccccccc
Confidence 88885442 234455556666553 247999999998764 2322222111112233444466
Q ss_pred CCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcC
Q 003175 618 NTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKG 659 (842)
Q Consensus 618 n~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~ 659 (842)
... .+...+... ...+.+.+++.++-.+++...+..
T Consensus 137 R~~----~v~~~~~~~--~~~~~l~~L~~~ea~~L~~~~~~~ 172 (287)
T PF00931_consen 137 RDR----SVAGSLGGT--DKVIELEPLSEEEALELFKKRAGR 172 (287)
T ss_dssp SCG----GGGTTHHSC--EEEEECSS--HHHHHHHHHHHHTS
T ss_pred ccc----ccccccccc--cccccccccccccccccccccccc
Confidence 542 222222211 256999999999999999999764
No 237
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.84 E-value=1.3e-08 Score=117.80 Aligned_cols=211 Identities=19% Similarity=0.235 Sum_probs=141.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
..++|+...+.++.+.+...... ...++|.|++|||||++++.+....... ..+|+.|||..+..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~----~~~vli~Ge~GtGK~~lA~~ih~~s~~~-------~~~~i~i~c~~~~~---- 202 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRS----SISVLINGESGTGKELVAHALHRHSPRA-------KAPFIALNMAAIPK---- 202 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhcc----CCeEEEEeCCCCcHHHHHHHHHhcCCCC-------CCCeEeeeCCCCCH----
Confidence 35788888999988888765543 4679999999999999999887754321 24699999988743
Q ss_pred HHHHHHHHhCCCCCH-HHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------CCCc
Q 003175 540 YRVIYEALSGHRVSW-KKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--------PNSK 610 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~-~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--------~~~~ 610 (842)
..+...++|+..+. ......-...|.. .....|||||+|.|....|..|+.+++.... ....
T Consensus 203 -~~~~~~lfg~~~g~~~~~~~~~~g~~~~--------a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~ 273 (469)
T PRK10923 203 -DLIESELFGHEKGAFTGANTIRQGRFEQ--------ADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVD 273 (469)
T ss_pred -HHHHHHhcCCCCCCCCCCCcCCCCCeeE--------CCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEee
Confidence 23444455543210 0000000000111 1335789999999998889999998864321 1234
Q ss_pred EEEEEEeCCCCCc-----cccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcCc--------ccCcHHHHHHHHHHH
Q 003175 611 LIVIGIANTMDLP-----EKLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKGI--------EAFEKQAIEFASRKV 675 (842)
Q Consensus 611 vivI~~tn~~dl~-----~~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~~--------~~~~~~~l~~ia~~~ 675 (842)
+.+|++++. ++. ..+...+..||....|.+||+.. +++..++.+.+... ..+++++++.+...
T Consensus 274 ~rii~~~~~-~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~- 351 (469)
T PRK10923 274 VRIIAATHQ-NLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL- 351 (469)
T ss_pred EEEEEeCCC-CHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC-
Confidence 677777764 221 24556778888767899999855 67777777666432 24788888887654
Q ss_pred HHHhcCHHHHHHHHHHHHHHHH
Q 003175 676 AAISGDARRALEICRRAAEIAD 697 (842)
Q Consensus 676 ~~~~Gd~R~al~ll~~A~~~A~ 697 (842)
...||+|+.-+++++++..+.
T Consensus 352 -~wpgNv~eL~~~i~~~~~~~~ 372 (469)
T PRK10923 352 -AWPGNVRQLENTCRWLTVMAA 372 (469)
T ss_pred -CCCChHHHHHHHHHHHHHhCC
Confidence 478999999999999887653
No 238
>PRK08116 hypothetical protein; Validated
Probab=98.83 E-value=1.7e-08 Score=107.19 Aligned_cols=141 Identities=20% Similarity=0.195 Sum_probs=84.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
+.++||+|++|||||+|+.++++++.... ..+++++... ++..+...+.+.. ......+.+.+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~-------~~v~~~~~~~------ll~~i~~~~~~~~---~~~~~~~~~~l~ 177 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG-------VPVIFVNFPQ------LLNRIKSTYKSSG---KEDENEIIRSLV 177 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC-------CeEEEEEHHH------HHHHHHHHHhccc---cccHHHHHHHhc
Confidence 45799999999999999999999997541 4578887433 3333433332211 011111222221
Q ss_pred cccCCCCCCCCcEEEEEecCcc--cccCChHHHHHhhcCCCCCCCcEEEEEEeCCC--CCccccchhhhccCCc--eeEE
Q 003175 567 DGKKIGKEDDRPCILLIDELDL--LVTRNQSVLYNILDWPTKPNSKLIVIGIANTM--DLPEKLLPRISSRMGV--QRLC 640 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~--L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~--dl~~~l~~~l~sR~~~--~~i~ 640 (842)
..-+|||||++. .....+..|+++++.......+ +|.+||.. ++...++.++.||+.. ..|.
T Consensus 178 ----------~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~--~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~ 245 (268)
T PRK08116 178 ----------NADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLP--TIVTTNLSLEELKNQYGKRIYDRILEMCTPVE 245 (268)
T ss_pred ----------CCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCC--EEEECCCCHHHHHHHHhHHHHHHHHHcCEEEE
Confidence 335999999954 3334578899999854333333 44477753 2334466788888522 3466
Q ss_pred ecCCCHHHHHHHHHHHh
Q 003175 641 FGPYNHQQLQEIISSRL 657 (842)
Q Consensus 641 f~p~~~~e~~~Il~~~l 657 (842)
|...+. +..+.+.++
T Consensus 246 ~~g~d~--R~~~~~ek~ 260 (268)
T PRK08116 246 NEGKSY--RKEIAKEKL 260 (268)
T ss_pred eeCcCh--hHHHHHHHH
Confidence 766554 555555554
No 239
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.83 E-value=9.1e-08 Score=112.14 Aligned_cols=137 Identities=21% Similarity=0.269 Sum_probs=97.6
Q ss_pred CcEEEEEecCcccccCChHHHHHhhcCCCC------------------CCCcEEEEEEeCCCCCccccchhhhccCCc--
Q 003175 577 RPCILLIDELDLLVTRNQSVLYNILDWPTK------------------PNSKLIVIGIANTMDLPEKLLPRISSRMGV-- 636 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~~~~L~~ll~~~~~------------------~~~~vivI~~tn~~dl~~~l~~~l~sR~~~-- 636 (842)
...+|||||++.|....|..|..+++.... -...+.||+++|. ++...+++.+.+||..
T Consensus 226 nGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~-~ll~~~dpdL~~rfk~~~ 304 (637)
T PRK13765 226 HKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNL-DALENMHPALRSRIKGYG 304 (637)
T ss_pred CCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCc-CHHHhhhHHHHHHhccCe
Confidence 457999999999977778888888743210 1235688888876 5667788999999862
Q ss_pred eeEEecC---CCHHHHHHHHHHHhc---C---cccCcHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHHHHHHH
Q 003175 637 QRLCFGP---YNHQQLQEIISSRLK---G---IEAFEKQAIEFASRKVAAISGD-------ARRALEICRRAAEIADYRI 700 (842)
Q Consensus 637 ~~i~f~p---~~~~e~~~Il~~~l~---~---~~~~~~~~l~~ia~~~~~~~Gd-------~R~al~ll~~A~~~A~~~~ 700 (842)
-.+.|.. -+.+.+..++....+ . ...++++++..+.+......|+ .|.+.++++.|..+|..+
T Consensus 305 v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~- 383 (637)
T PRK13765 305 YEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSE- 383 (637)
T ss_pred EEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhh-
Confidence 3455653 345555555553332 2 3478999998888777666665 788889999999988766
Q ss_pred hhhccCCCcCCcCCCcccHHHHHHHHH
Q 003175 701 KKQTSNKNSASVGKSLVGMADVEAAIQ 727 (842)
Q Consensus 701 ~~~~~~~~~~~~~~~~It~~dv~~A~~ 727 (842)
+...|+.+||.+|+.
T Consensus 384 ------------~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 384 ------------GAELTTAEHVLEAKK 398 (637)
T ss_pred ------------ccceecHHHHHHHHH
Confidence 356789999988874
No 240
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=1.2e-07 Score=100.33 Aligned_cols=140 Identities=14% Similarity=0.127 Sum_probs=94.1
Q ss_pred HHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHh--------hcCCCCCceEEEEecccCCChHHHHHHHHH
Q 003175 474 AFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEV--------ESGSIRPYCFVEVNGLKLASPENIYRVIYE 545 (842)
Q Consensus 474 ~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~--------~~~~~~~~~~v~in~~~~~s~~~~~~~i~~ 545 (842)
..|...+..+. .++++||+||.|+||+.+|..+++.+.+.. ..+..|++.++.-.+..
T Consensus 7 ~~L~~~i~~~r-l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~------------- 72 (290)
T PRK05917 7 EALIQRVRDQK-VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG------------- 72 (290)
T ss_pred HHHHHHHHcCC-cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC-------------
Confidence 34444555554 578999999999999999999999997642 12334444433222110
Q ss_pred HHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccc
Q 003175 546 ALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEK 625 (842)
Q Consensus 546 ~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~ 625 (842)
...+.++..+ +.+.+.. ....+...|+|||++|.|....++.|+++++. +...++||.+|+. ++.
T Consensus 73 ----~~I~idqiR~-l~~~~~~----~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEE---Pp~~~~fiL~~~~---~~~ 137 (290)
T PRK05917 73 ----RLHSIETPRA-IKKQIWI----HPYESPYKIYIIHEADRMTLDAISAFLKVLED---PPQHGVIILTSAK---PQR 137 (290)
T ss_pred ----CcCcHHHHHH-HHHHHhh----CccCCCceEEEEechhhcCHHHHHHHHHHhhc---CCCCeEEEEEeCC---hhh
Confidence 0112233322 2222221 12234678999999999999999999999985 4567777777776 588
Q ss_pred cchhhhccCCceeEEecCC
Q 003175 626 LLPRISSRMGVQRLCFGPY 644 (842)
Q Consensus 626 l~~~l~sR~~~~~i~f~p~ 644 (842)
+++.++||+. .+.|++.
T Consensus 138 ll~TI~SRcq--~~~~~~~ 154 (290)
T PRK05917 138 LPPTIRSRSL--SIHIPME 154 (290)
T ss_pred CcHHHHhcce--EEEccch
Confidence 9999999995 5999886
No 241
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.81 E-value=1.2e-07 Score=102.89 Aligned_cols=158 Identities=22% Similarity=0.224 Sum_probs=100.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH---HHHHHHH---------------Hh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI---YRVIYEA---------------LS 548 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~---~~~i~~~---------------l~ 548 (842)
-.++||.|+.|||||+++|+++.-|... .+|. .|.-..++.+- ....... +.
T Consensus 38 iggvLI~G~kGtaKSt~~Rala~LLp~~---------~~V~-gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v 107 (423)
T COG1239 38 IGGALIAGEKGTAKSTLARALADLLPEI---------EVVI-GCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFV 107 (423)
T ss_pred cceeEEecCCCccHHHHHHHHHHhCCcc---------ceec-CCCCCCCCCChhhhhHHHHhhccccccccccceeccee
Confidence 4678999999999999999999988642 2222 44322222211 1111111 00
Q ss_pred CCC-----------CCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCC----------CCC
Q 003175 549 GHR-----------VSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWP----------TKP 607 (842)
Q Consensus 549 g~~-----------~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~----------~~~ 607 (842)
+.. +....+++.=.+.|.-+. + ...+..||.|||+..|..+-+++|++.+... ...
T Consensus 108 ~lPl~ateDrvvGslDi~ka~~~g~~af~PGl-L--a~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~h 184 (423)
T COG1239 108 ALPLGATEDRLVGSLDIEKALEEGPKAFQPGL-L--ARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRH 184 (423)
T ss_pred cCCCccchhhhccccCHHHHHhcCccccCCcc-h--hhccCCEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeecc
Confidence 110 111112111112333221 1 2235579999999999988899999998653 123
Q ss_pred CCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcC
Q 003175 608 NSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKG 659 (842)
Q Consensus 608 ~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~ 659 (842)
..+++|||++|.. --.|-++|+.||+...-.-++.+.+++.+|+.+++.-
T Consensus 185 pa~fvligTmNPE--eGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 185 PARFLLIGTMNPE--EGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred CccEEEEeecCcc--ccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 5689999999975 3567889999999644445777889999999999864
No 242
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.81 E-value=1.5e-08 Score=116.65 Aligned_cols=211 Identities=17% Similarity=0.170 Sum_probs=139.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
..+.+....++.+...+...... ...++|+|++||||+++++.+....... ..+|+.|||..+..
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~----~~~vli~Ge~GtGK~~lA~~ih~~s~~~-------~~~~v~v~c~~~~~---- 203 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPS----DITVLLLGESGTGKEVLARALHQLSDRK-------DKRFVAINCAAIPE---- 203 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCC----CCCEEEECCCCcCHHHHHHHHHHhCCcC-------CCCeEEEECCCCCh----
Confidence 45788888888888888765432 4678999999999999999887654321 14599999998753
Q ss_pred HHHHHHHHhCCCCCH-HHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------CCCc
Q 003175 540 YRVIYEALSGHRVSW-KKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--------PNSK 610 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~-~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--------~~~~ 610 (842)
..+...++|+..+. ..........|. .....+|||||++.|....|..|+.+++.... ....
T Consensus 204 -~~~~~~lfg~~~~~~~~~~~~~~g~~~--------~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~ 274 (445)
T TIGR02915 204 -NLLESELFGYEKGAFTGAVKQTLGKIE--------YAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVD 274 (445)
T ss_pred -HHHHHHhcCCCCCCcCCCccCCCCcee--------ECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeec
Confidence 23444555543211 000000000111 12346899999999999889999988864311 1135
Q ss_pred EEEEEEeCCCCCc-----cccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcCc--------ccCcHHHHHHHHHHH
Q 003175 611 LIVIGIANTMDLP-----EKLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKGI--------EAFEKQAIEFASRKV 675 (842)
Q Consensus 611 vivI~~tn~~dl~-----~~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~~--------~~~~~~~l~~ia~~~ 675 (842)
+.+|++++.. +. ..+.+.+..|+....|.+||+.. +++..++...+... ..+++++++.+...
T Consensus 275 ~rii~~~~~~-l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~- 352 (445)
T TIGR02915 275 VRIVCATNQD-LKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAH- 352 (445)
T ss_pred eEEEEecCCC-HHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhC-
Confidence 6778777652 21 23455677788777899999855 56666666555422 25888888887654
Q ss_pred HHHhcCHHHHHHHHHHHHHHHH
Q 003175 676 AAISGDARRALEICRRAAEIAD 697 (842)
Q Consensus 676 ~~~~Gd~R~al~ll~~A~~~A~ 697 (842)
...||+|+..+++++|+..+.
T Consensus 353 -~wpgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 353 -AWPGNVRELENKVKRAVIMAE 373 (445)
T ss_pred -CCCChHHHHHHHHHHHHHhCC
Confidence 358999999999999987653
No 243
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.80 E-value=1.8e-08 Score=116.53 Aligned_cols=210 Identities=19% Similarity=0.251 Sum_probs=140.6
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHH
Q 003175 461 FLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIY 540 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~ 540 (842)
.+.|....+.++...+...... ...++|.|.+||||+++++++....... ...|+.+||..+..
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~~----~~~vli~Ge~GtGK~~~A~~ih~~~~~~-------~~~~~~~~c~~~~~----- 198 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSRS----DITVLINGESGTGKELVARALHRHSPRA-------NGPFIALNMAAIPK----- 198 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhCc----CCeEEEECCCCCCHHHHHHHHHHhCCCC-------CCCeEEEeCCCCCH-----
Confidence 4677777888888877664332 4678999999999999999887654321 14699999998743
Q ss_pred HHHHHHHhCCCCC-HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------CCCcE
Q 003175 541 RVIYEALSGHRVS-WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--------PNSKL 611 (842)
Q Consensus 541 ~~i~~~l~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--------~~~~v 611 (842)
..+...++|+..+ +......-...|.. .....|||||++.|....|..|+.+++.... ....+
T Consensus 199 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~--------a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~ 270 (463)
T TIGR01818 199 DLIESELFGHEKGAFTGANTRRQGRFEQ--------ADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDV 270 (463)
T ss_pred HHHHHHhcCCCCCCCCCcccCCCCcEEE--------CCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeee
Confidence 2233344554211 10000000001111 1346799999999998889899988864321 12246
Q ss_pred EEEEEeCCCCCc-----cccchhhhccCCceeEEecCCC--HHHHHHHHHHHhcCc--------ccCcHHHHHHHHHHHH
Q 003175 612 IVIGIANTMDLP-----EKLLPRISSRMGVQRLCFGPYN--HQQLQEIISSRLKGI--------EAFEKQAIEFASRKVA 676 (842)
Q Consensus 612 ivI~~tn~~dl~-----~~l~~~l~sR~~~~~i~f~p~~--~~e~~~Il~~~l~~~--------~~~~~~~l~~ia~~~~ 676 (842)
.||++++. ++. ..+.+.+..|+....|.+||+. .+++..++...+... ..+++++++.+...
T Consensus 271 rii~~~~~-~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~-- 347 (463)
T TIGR01818 271 RIVAATHQ-NLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL-- 347 (463)
T ss_pred EEEEeCCC-CHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--
Confidence 67777764 221 2345577778876789999998 688888887776532 25889999887765
Q ss_pred HHhcCHHHHHHHHHHHHHHHH
Q 003175 677 AISGDARRALEICRRAAEIAD 697 (842)
Q Consensus 677 ~~~Gd~R~al~ll~~A~~~A~ 697 (842)
...||+|+.-+++++|+..+.
T Consensus 348 ~wpgNvreL~~~~~~~~~~~~ 368 (463)
T TIGR01818 348 RWPGNVRQLENLCRWLTVMAS 368 (463)
T ss_pred CCCChHHHHHHHHHHHHHhCC
Confidence 579999999999999987664
No 244
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=1.2e-07 Score=98.10 Aligned_cols=163 Identities=15% Similarity=0.132 Sum_probs=107.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhh--------------cCCCCCceEEEEecccCCChHHHHHHHHHHHhCCC
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVE--------------SGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHR 551 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~--------------~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~ 551 (842)
+++++||+|+.|+||..+|.++++.+-+... .+..|++.+++=. +..
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~-------------------~~~ 66 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQ-------------------KNP 66 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCC-------------------ccc
Confidence 4789999999999999999999999876421 1223332222111 011
Q ss_pred CCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhh
Q 003175 552 VSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRIS 631 (842)
Q Consensus 552 ~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~ 631 (842)
.+.++..+.. +.|.... -..+...|+|||++|.+.....+.|+.+++. +..+.++|.+|+. ++.+++.++
T Consensus 67 I~id~ir~l~-~~l~~~s---~e~~~~KV~II~~ae~m~~~AaNaLLK~LEE---Pp~~t~fiLit~~---~~~lLpTI~ 136 (261)
T PRK05818 67 IKKEDALSII-NKLNRPS---VESNGKKIYIIYGIEKLNKQSANSLLKLIEE---PPKNTYGIFTTRN---ENNILNTIL 136 (261)
T ss_pred CCHHHHHHHH-HHHccCc---hhcCCCEEEEeccHhhhCHHHHHHHHHhhcC---CCCCeEEEEEECC---hHhCchHhh
Confidence 2333333333 3332111 0113568999999999998889999999985 4667777778876 588999999
Q ss_pred ccCCceeEEecCC----------CHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003175 632 SRMGVQRLCFGPY----------NHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICR 690 (842)
Q Consensus 632 sR~~~~~i~f~p~----------~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~ 690 (842)
||+. .+.|+++ +..++.+++..+.. +++ . ......|+..+|++++.
T Consensus 137 SRCq--~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~----~d~-~------i~~~a~g~~~~a~~l~~ 192 (261)
T PRK05818 137 SRCV--QYVVLSKEKKVPFKVESNDRYFQYILLSFYS----VDE-Q------LQAYNNGSFSKLKNIIE 192 (261)
T ss_pred hhee--eeecCChhhhcccccccChHHHHHHHHHccC----ccH-H------HHHHcCCCHHHHHHHHH
Confidence 9995 5888887 55555555554432 222 2 22235899999888887
No 245
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.78 E-value=8.8e-10 Score=85.53 Aligned_cols=47 Identities=36% Similarity=1.004 Sum_probs=40.3
Q ss_pred ccceeecccc-cccccCccCCCccccccCCCCCC--CCCCCCcccccccc
Q 003175 190 ECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLK--EVPEGEWVCEFCEA 236 (842)
Q Consensus 190 ~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~--~~p~~~W~C~~C~~ 236 (842)
+|.+|+..++ +.||.||.|..|||..|++|++. ..+.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5888998655 78999999999999999999876 55556999999975
No 246
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=9.3e-08 Score=102.50 Aligned_cols=187 Identities=18% Similarity=0.269 Sum_probs=118.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
-.++|+.||.|+|||.|++.+|+-|. ++|+-.+|..++-...+ |+ +....|.+++.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ld----------VPfaIcDcTtLTQAGYV---------Ge-----DVEsvi~KLl~ 281 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLD----------VPFAICDCTTLTQAGYV---------GE-----DVESVIQKLLQ 281 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhC----------CCeEEecccchhhcccc---------cc-----cHHHHHHHHHH
Confidence 36799999999999999999999987 78999999987643110 11 11111222222
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCC--------------hHHHHHhhcCCC----------C--------CCCcEEEE
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRN--------------QSVLYNILDWPT----------K--------PNSKLIVI 614 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~--------------~~~L~~ll~~~~----------~--------~~~~vivI 614 (842)
++.- --.+.+..||||||+|.+.... |..|+.|++... . ....|.||
T Consensus 282 ~A~~-nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFi 360 (564)
T KOG0745|consen 282 EAEY-NVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFI 360 (564)
T ss_pred HccC-CHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEE
Confidence 2110 0011245799999999998432 678999987431 0 01235555
Q ss_pred EEeC--C--------------------------------------------------CCCc-cccchhhhccCCceeEEe
Q 003175 615 GIAN--T--------------------------------------------------MDLP-EKLLPRISSRMGVQRLCF 641 (842)
Q Consensus 615 ~~tn--~--------------------------------------------------~dl~-~~l~~~l~sR~~~~~i~f 641 (842)
+..- . -||. ..|.|.+..||. -.+.|
T Consensus 361 asGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfP-VlVpl 439 (564)
T KOG0745|consen 361 ASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFP-VLVPL 439 (564)
T ss_pred ecccccchHHHHHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccc-eEeec
Confidence 3211 0 0110 124577778887 47789
Q ss_pred cCCCHHHHHHHHHHHhcC----------c---c-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 003175 642 GPYNHQQLQEIISSRLKG----------I---E-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYR 699 (842)
Q Consensus 642 ~p~~~~e~~~Il~~~l~~----------~---~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~ 699 (842)
.+++.+++.+||..--.. . . .|.+++++.||++.-.-.--+|-.-.|+..+...|..+
T Consensus 440 h~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 440 HSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFE 511 (564)
T ss_pred cccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccc
Confidence 999999999998742111 1 1 68899999999886544445666556777777766554
No 247
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=6.5e-08 Score=105.29 Aligned_cols=145 Identities=19% Similarity=0.310 Sum_probs=98.2
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhh-----------------cCCCCCceEEEEecccCCChHHHHHHHHHHHh
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVE-----------------SGSIRPYCFVEVNGLKLASPENIYRVIYEALS 548 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~-----------------~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~ 548 (842)
.+++++|+||+|+|||++++.+++.+.+... .+..|+ +++++...-... .
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD--~~~~~p~~~~~~-----------~ 86 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPD--FYEITPLSDEPE-----------N 86 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCC--EEEEeccccccc-----------c
Confidence 5789999999999999999999999976432 122233 455543210000 0
Q ss_pred C---CCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccc
Q 003175 549 G---HRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEK 625 (842)
Q Consensus 549 g---~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~ 625 (842)
| ...+.++..+.+...... ...+...|+|||+++.|....++.|+++++.+. ....||.+|+. ++.
T Consensus 87 g~~~~~I~id~iR~l~~~~~~~-----p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~---~~~~~Ilvth~---~~~ 155 (325)
T PRK08699 87 GRKLLQIKIDAVREIIDNVYLT-----SVRGGLRVILIHPAESMNLQAANSLLKVLEEPP---PQVVFLLVSHA---ADK 155 (325)
T ss_pred cccCCCcCHHHHHHHHHHHhhC-----cccCCceEEEEechhhCCHHHHHHHHHHHHhCc---CCCEEEEEeCC---hHh
Confidence 1 012334444433332211 122456788999999999988999999998653 23556667776 467
Q ss_pred cchhhhccCCceeEEecCCCHHHHHHHHHHH
Q 003175 626 LLPRISSRMGVQRLCFGPYNHQQLQEIISSR 656 (842)
Q Consensus 626 l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~ 656 (842)
+.+.+.||+. .+.|++++.+++.+.|...
T Consensus 156 ll~ti~SRc~--~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 156 VLPTIKSRCR--KMVLPAPSHEEALAYLRER 184 (325)
T ss_pred ChHHHHHHhh--hhcCCCCCHHHHHHHHHhc
Confidence 8899999995 5999999999999988764
No 248
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.8e-07 Score=96.76 Aligned_cols=218 Identities=19% Similarity=0.248 Sum_probs=127.2
Q ss_pred ccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 003175 443 QTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRP 522 (842)
Q Consensus 443 ~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~ 522 (842)
+.+.+.||+.|++.+. ..+.+|...-. ...-+-.-.++|+.||.|+|||.||+.+++.|.
T Consensus 63 VIGQe~AKKvLsVAVY--------NHYKRl~~~~~--~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln---------- 122 (408)
T COG1219 63 VIGQEQAKKVLSVAVY--------NHYKRLNNKED--NDDVELSKSNILLIGPTGSGKTLLAQTLAKILN---------- 122 (408)
T ss_pred eecchhhhceeeeeeh--------hHHHHHhccCC--CCceeeeeccEEEECCCCCcHHHHHHHHHHHhC----------
Confidence 3566788888987654 12233322110 000111246899999999999999999999997
Q ss_pred ceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC---------
Q 003175 523 YCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN--------- 593 (842)
Q Consensus 523 ~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~--------- 593 (842)
++|...++..++....+ | ++....|.+.+..+ .+.-.+....||+|||||.+..++
T Consensus 123 VPFaiADATtLTEAGYV---------G-----EDVENillkLlqaa-dydV~rAerGIIyIDEIDKIarkSeN~SITRDV 187 (408)
T COG1219 123 VPFAIADATTLTEAGYV---------G-----EDVENILLKLLQAA-DYDVERAERGIIYIDEIDKIARKSENPSITRDV 187 (408)
T ss_pred CCeeeccccchhhcccc---------c-----hhHHHHHHHHHHHc-ccCHHHHhCCeEEEechhhhhccCCCCCccccc
Confidence 77888888887653111 1 11112222222221 111112245799999999998754
Q ss_pred -----hHHHHHhhcCCC-----C-------------CCCcEEEEEEeC----------C-----C---------------
Q 003175 594 -----QSVLYNILDWPT-----K-------------PNSKLIVIGIAN----------T-----M--------------- 620 (842)
Q Consensus 594 -----~~~L~~ll~~~~-----~-------------~~~~vivI~~tn----------~-----~--------------- 620 (842)
|+.|+.+++... . ..+++.||+-.- + +
T Consensus 188 SGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~ 267 (408)
T COG1219 188 SGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEE 267 (408)
T ss_pred CchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhH
Confidence 678999997531 0 123455543211 0 0
Q ss_pred ----------CC-ccccchhhhccCCceeEEecCCCHHHHHHHHHHHh----c------C---cc-cCcHHHHHHHHHHH
Q 003175 621 ----------DL-PEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRL----K------G---IE-AFEKQAIEFASRKV 675 (842)
Q Consensus 621 ----------dl-~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l----~------~---~~-~~~~~~l~~ia~~~ 675 (842)
|+ ...|.|.+..|+. -...+.+++.+.+.+||..-- + . .. .|+++++..+|+..
T Consensus 268 ~~~l~~vepeDLvkFGLIPEfIGRlP-via~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A 346 (408)
T COG1219 268 GELLKQVEPEDLVKFGLIPEFIGRLP-VIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKA 346 (408)
T ss_pred HHHHHhcChHHHHHcCCcHHHhcccc-eeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHH
Confidence 00 0123466677776 356788899999999886421 1 1 11 68899999888876
Q ss_pred HHHhcCHHHHHHHHHHHHHHH
Q 003175 676 AAISGDARRALEICRRAAEIA 696 (842)
Q Consensus 676 ~~~~Gd~R~al~ll~~A~~~A 696 (842)
-...-.+|-.-.++.....-.
T Consensus 347 ~~rkTGARGLRsI~E~~lld~ 367 (408)
T COG1219 347 IERKTGARGLRSIIEELLLDV 367 (408)
T ss_pred HHhccchhHHHHHHHHHHHHH
Confidence 444444554434555444433
No 249
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.7e-07 Score=111.37 Aligned_cols=187 Identities=17% Similarity=0.194 Sum_probs=129.2
Q ss_pred cHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcc--cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 003175 444 TELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQC--LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIR 521 (842)
Q Consensus 444 ~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~--~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~ 521 (842)
..+....+.|+ +.++|.++.+..|..+|.....+-.. +...++|.||.|+|||-|+++++..+....
T Consensus 551 ~~l~~L~~~L~-----~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse------ 619 (898)
T KOG1051|consen 551 ERLKKLEERLH-----ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSE------ 619 (898)
T ss_pred HHHHHHHHHHH-----hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCc------
Confidence 45666777777 56789999999999999988765332 467899999999999999999999997542
Q ss_pred CceEEEEecccCCChHHHHHHHHHHHhCCCCCH--HHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHH
Q 003175 522 PYCFVEVNGLKLASPENIYRVIYEALSGHRVSW--KKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYN 599 (842)
Q Consensus 522 ~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~--~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ 599 (842)
-.+|.|++..+.. +.. +.|...+| ......|.+.+. .+..+||+|||||......++.|++
T Consensus 620 -~~~IriDmse~~e-------vsk-ligsp~gyvG~e~gg~Lteavr--------rrP~sVVLfdeIEkAh~~v~n~llq 682 (898)
T KOG1051|consen 620 -ENFIRLDMSEFQE-------VSK-LIGSPPGYVGKEEGGQLTEAVK--------RRPYSVVLFEEIEKAHPDVLNILLQ 682 (898)
T ss_pred -cceEEechhhhhh-------hhh-ccCCCcccccchhHHHHHHHHh--------cCCceEEEEechhhcCHHHHHHHHH
Confidence 3499999887553 222 22332222 122334444442 2467999999999998888999999
Q ss_pred hhcCCCCC--------CCcEEEEEEeCCC------CCc-------------------------------cccchhhhccC
Q 003175 600 ILDWPTKP--------NSKLIVIGIANTM------DLP-------------------------------EKLLPRISSRM 634 (842)
Q Consensus 600 ll~~~~~~--------~~~vivI~~tn~~------dl~-------------------------------~~l~~~l~sR~ 634 (842)
+++..... -.++|||+|+|.- +.. ..+.+.+.+|.
T Consensus 683 ~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nri 762 (898)
T KOG1051|consen 683 LLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRI 762 (898)
T ss_pred HHhcCccccCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhccc
Confidence 99865322 2458999998751 100 11223344445
Q ss_pred CceeEEecCCCHHHHHHHHHHHhcC
Q 003175 635 GVQRLCFGPYNHQQLQEIISSRLKG 659 (842)
Q Consensus 635 ~~~~i~f~p~~~~e~~~Il~~~l~~ 659 (842)
. ..+.|.+++.+++.+|+...+..
T Consensus 763 d-~i~lf~~l~~~~~~~i~~~~~~e 786 (898)
T KOG1051|consen 763 D-ELDLNLPLDRDELIEIVNKQLTE 786 (898)
T ss_pred c-eeeeecccchhhHhhhhhhHHHH
Confidence 4 46778899999888888777643
No 250
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.73 E-value=2.5e-09 Score=119.26 Aligned_cols=52 Identities=33% Similarity=0.920 Sum_probs=46.9
Q ss_pred ccccceeecccc-cccccCccCCCccccccCCCC--CCCCCCCCccccccccccc
Q 003175 188 VEECRICFRAGR-SVMLECDDCLGGFHLKCLKPP--LKEVPEGEWVCEFCEARKL 239 (842)
Q Consensus 188 ~~~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~--l~~~p~~~W~C~~C~~~~~ 239 (842)
.++|..|++.+. ..+||||+|+..||+.||+|| ...+|.|.|||+.|..+-.
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~ 307 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSV 307 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeeee
Confidence 459999999886 567999999999999999999 5799999999999998764
No 251
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.73 E-value=1.2e-08 Score=100.42 Aligned_cols=130 Identities=21% Similarity=0.239 Sum_probs=86.0
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHH
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYR 541 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~ 541 (842)
|+|....+.++.+.++.+... ..+|+|+|++||||+.+|+++.+...+. .-+||.|||..+.. .
T Consensus 1 liG~s~~m~~~~~~~~~~a~~----~~pVlI~GE~GtGK~~lA~~IH~~s~r~-------~~pfi~vnc~~~~~-----~ 64 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS----DLPVLITGETGTGKELLARAIHNNSPRK-------NGPFISVNCAALPE-----E 64 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS----TS-EEEECSTTSSHHHHHHHHHHCSTTT-------TS-EEEEETTTS-H-----H
T ss_pred CEeCCHHHHHHHHHHHHHhCC----CCCEEEEcCCCCcHHHHHHHHHHhhhcc-------cCCeEEEehhhhhc-----c
Confidence 467888899999999887754 4779999999999999999987744322 24699999998743 3
Q ss_pred HHHHHHhCCCCC-HHH----HHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC--------CCC
Q 003175 542 VIYEALSGHRVS-WKK----ALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT--------KPN 608 (842)
Q Consensus 542 ~i~~~l~g~~~~-~~~----~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~--------~~~ 608 (842)
.+...++|...+ +.. ....|. .+ ...+|+||||+.|....|..|+.+++... ...
T Consensus 65 ~~e~~LFG~~~~~~~~~~~~~~G~l~----~A--------~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 132 (168)
T PF00158_consen 65 LLESELFGHEKGAFTGARSDKKGLLE----QA--------NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVP 132 (168)
T ss_dssp HHHHHHHEBCSSSSTTTSSEBEHHHH----HT--------TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE
T ss_pred hhhhhhhccccccccccccccCCcee----ec--------cceEEeecchhhhHHHHHHHHHHHHhhchhcccccccccc
Confidence 455566664321 100 011222 11 44799999999999999999999997321 113
Q ss_pred CcEEEEEEeCC
Q 003175 609 SKLIVIGIANT 619 (842)
Q Consensus 609 ~~vivI~~tn~ 619 (842)
.++-||++|+.
T Consensus 133 ~~~RiI~st~~ 143 (168)
T PF00158_consen 133 VDVRIIASTSK 143 (168)
T ss_dssp --EEEEEEESS
T ss_pred ccceEEeecCc
Confidence 46888988875
No 252
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.73 E-value=1.6e-06 Score=103.50 Aligned_cols=168 Identities=14% Similarity=0.111 Sum_probs=94.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcC----C-----------cccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCce
Q 003175 460 KFLPCRNKEMEDITAFIKGATCD----D-----------QCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYC 524 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~----~-----------~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~ 524 (842)
+.+.|.+.....|.-.|-..... + -....+|||.|.||||||.+++.+.+...+.... ....
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~yt---sG~~ 526 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYT---SGKS 526 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccC---CCCC
Confidence 35678887777665555332210 0 0012389999999999999999988743321000 0011
Q ss_pred EEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCC
Q 003175 525 FVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWP 604 (842)
Q Consensus 525 ~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~ 604 (842)
++.+++..... ......|.. .+. +..+. .....+++|||++.+....|..|+.+|+..
T Consensus 527 ~s~vgLTa~~~-------~~d~~tG~~------------~le-~GaLv--lAdgGtL~IDEidkms~~~Q~aLlEaMEqq 584 (915)
T PTZ00111 527 SSSVGLTASIK-------FNESDNGRA------------MIQ-PGAVV--LANGGVCCIDELDKCHNESRLSLYEVMEQQ 584 (915)
T ss_pred Cccccccchhh-------hcccccCcc------------ccc-CCcEE--EcCCCeEEecchhhCCHHHHHHHHHHHhCC
Confidence 22222221100 000000100 000 00000 012369999999999988899999998643
Q ss_pred C----------CCCCcEEEEEEeCCCC--------Cc--cccchhhhccCCceeEEecCCCHHHHHHH
Q 003175 605 T----------KPNSKLIVIGIANTMD--------LP--EKLLPRISSRMGVQRLCFGPYNHQQLQEI 652 (842)
Q Consensus 605 ~----------~~~~~vivI~~tn~~d--------l~--~~l~~~l~sR~~~~~i~f~p~~~~e~~~I 652 (842)
. .-..++.||+++|... +. -.|.+.+.|||+...+.+..++.+.=..|
T Consensus 585 tIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 585 TVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred EEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHH
Confidence 2 1246789999999742 11 23567899999875566677766554444
No 253
>PRK12377 putative replication protein; Provisional
Probab=98.72 E-value=4.5e-08 Score=102.07 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHH
Q 003175 468 EMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEAL 547 (842)
Q Consensus 468 e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l 547 (842)
.+..+..+...... + ..+++|+|+||||||+|+.++++.+.... ..+++++... +...|....
T Consensus 86 a~~~a~~~a~~~~~-~---~~~l~l~G~~GtGKThLa~AIa~~l~~~g-------~~v~~i~~~~------l~~~l~~~~ 148 (248)
T PRK12377 86 ALSQAKSIADELMT-G---CTNFVFSGKPGTGKNHLAAAIGNRLLAKG-------RSVIVVTVPD------VMSRLHESY 148 (248)
T ss_pred HHHHHHHHHHHHHh-c---CCeEEEECCCCCCHHHHHHHHHHHHHHcC-------CCeEEEEHHH------HHHHHHHHH
Confidence 34444445444432 1 46899999999999999999999997531 3466665432 333343332
Q ss_pred hCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccc--cCChHHHHHhhcCCCCCCCcEEEEEEeCCC--CCc
Q 003175 548 SGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLV--TRNQSVLYNILDWPTKPNSKLIVIGIANTM--DLP 623 (842)
Q Consensus 548 ~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~--~~~~~~L~~ll~~~~~~~~~vivI~~tn~~--dl~ 623 (842)
.. ... ...+.+.+ ....+|||||++... ...++.|+++++.......+++| +||-. ++.
T Consensus 149 ~~-~~~----~~~~l~~l----------~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptii--tSNl~~~~l~ 211 (248)
T PRK12377 149 DN-GQS----GEKFLQEL----------CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGM--LTNLNHEAMS 211 (248)
T ss_pred hc-cch----HHHHHHHh----------cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEE--EcCCCHHHHH
Confidence 11 001 11111122 245799999996553 34578999999865433344444 77752 233
Q ss_pred cccchhhhccCCc---eeEEecCCC
Q 003175 624 EKLLPRISSRMGV---QRLCFGPYN 645 (842)
Q Consensus 624 ~~l~~~l~sR~~~---~~i~f~p~~ 645 (842)
+.+..++.||+.. ..|.|..-+
T Consensus 212 ~~~~~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 212 TLLGERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred HHhhHHHHHHHhhCCCeEEEeCCcC
Confidence 4556677787742 346665533
No 254
>PHA02244 ATPase-like protein
Probab=98.72 E-value=1.2e-07 Score=102.54 Aligned_cols=150 Identities=16% Similarity=0.197 Sum_probs=94.9
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHH
Q 003175 461 FLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIY 540 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~ 540 (842)
..++....+..+...+..++.. +.++||+||+|||||++|++++..++ .+|+.+++. .+...+.
T Consensus 97 ~~ig~sp~~~~~~~ri~r~l~~----~~PVLL~GppGtGKTtLA~aLA~~lg----------~pfv~In~l--~d~~~L~ 160 (383)
T PHA02244 97 TKIASNPTFHYETADIAKIVNA----NIPVFLKGGAGSGKNHIAEQIAEALD----------LDFYFMNAI--MDEFELK 160 (383)
T ss_pred cccCCCHHHHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhC----------CCEEEEecC--hHHHhhc
Confidence 3556666666666666666554 46799999999999999999999875 458888743 1111110
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCC--------CCCCCcEE
Q 003175 541 RVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWP--------TKPNSKLI 612 (842)
Q Consensus 541 ~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~--------~~~~~~vi 612 (842)
. .+ .....+... .+...+ ....+|+|||++.+....+..|..+++.. ...+..+.
T Consensus 161 G----~i-~~~g~~~dg--pLl~A~----------~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FR 223 (383)
T PHA02244 161 G----FI-DANGKFHET--PFYEAF----------KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFR 223 (383)
T ss_pred c----cc-cccccccch--HHHHHh----------hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEE
Confidence 0 00 000011100 111112 14579999999999877777788877521 11245789
Q ss_pred EEEEeCCCC--------CccccchhhhccCCceeEEecCCC
Q 003175 613 VIGIANTMD--------LPEKLLPRISSRMGVQRLCFGPYN 645 (842)
Q Consensus 613 vI~~tn~~d--------l~~~l~~~l~sR~~~~~i~f~p~~ 645 (842)
||+++|... -...+.+.+.+||. .|.|.-++
T Consensus 224 lIATsN~~~~G~~~~y~G~k~L~~AllDRFv--~I~~dyp~ 262 (383)
T PHA02244 224 VISAGNTLGKGADHIYVARNKIDGATLDRFA--PIEFDYDE 262 (383)
T ss_pred EEEeeCCCccCcccccCCCcccCHHHHhhcE--EeeCCCCc
Confidence 999999742 12567889999995 47776665
No 255
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.72 E-value=8.3e-09 Score=101.73 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=72.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH-HHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR-SEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~-~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
-.+++|+||+|+|||.|++++++.+. .. .-.++.+|+..+....+....+...+ +....+... .
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~-------~~~~~~~d~s~~~~~~~~~~~~~~l~-~~~~~~v~~----~--- 67 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGS-------ERPLIRIDMSEYSEGDDVESSVSKLL-GSPPGYVGA----E--- 67 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SS-------CCEEEEEEGGGHCSHHHCSCHCHHHH-HHTTCHHHH----H---
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCC-------ccchHHHhhhcccccchHHhhhhhhh-hcccceeec----c---
Confidence 36789999999999999999999997 22 13699999999888322222222111 111111110 0
Q ss_pred hcccCCCCCCCCcEEEEEecCccccc-----------CChHHHHHhhcCCC--------CCCCcEEEEEEeCC
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVT-----------RNQSVLYNILDWPT--------KPNSKLIVIGIANT 619 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~-----------~~~~~L~~ll~~~~--------~~~~~vivI~~tn~ 619 (842)
...||+|||||+... .-|+.|+++|+... ..-.+++||+++|-
T Consensus 68 -----------~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~ 129 (171)
T PF07724_consen 68 -----------EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNF 129 (171)
T ss_dssp -----------HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESS
T ss_pred -----------chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccc
Confidence 123999999999998 66899999996431 12356899999985
No 256
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.71 E-value=5.2e-08 Score=112.52 Aligned_cols=209 Identities=20% Similarity=0.223 Sum_probs=135.3
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHH
Q 003175 461 FLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIY 540 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~ 540 (842)
.+.+....+..+...+...... ...++|+|++||||+++++.+....... .-+|+.+||..+..
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~~----~~~vli~Ge~GtGK~~lA~~ih~~s~~~-------~~~~~~i~c~~~~~----- 207 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIALS----QASVLISGESGTGKELIARAIHYNSRRA-------KGPFIKVNCAALPE----- 207 (457)
T ss_pred ceecccHHHhHHHHHHHHHcCC----CcEEEEEcCCCccHHHHHHHHHHhCCCC-------CCCeEEEECCCCCH-----
Confidence 4667777777777776665543 4679999999999999999887654321 14599999998753
Q ss_pred HHHHHHHhCCCCCH-HHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------CCCcE
Q 003175 541 RVIYEALSGHRVSW-KKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--------PNSKL 611 (842)
Q Consensus 541 ~~i~~~l~g~~~~~-~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--------~~~~v 611 (842)
..+...++|+..+. ......-...|.. ....+|||||+|.|....|..|+.+++.... ....+
T Consensus 208 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~--------a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~ 279 (457)
T PRK11361 208 SLLESELFGHEKGAFTGAQTLRQGLFER--------ANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDI 279 (457)
T ss_pred HHHHHHhcCCCCCCCCCCCCCCCCceEE--------CCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeece
Confidence 23444555543210 0000000001111 1346899999999999889889988864310 11347
Q ss_pred EEEEEeCCCCCc-----cccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcCc--------ccCcHHHHHHHHHHHH
Q 003175 612 IVIGIANTMDLP-----EKLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKGI--------EAFEKQAIEFASRKVA 676 (842)
Q Consensus 612 ivI~~tn~~dl~-----~~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~~--------~~~~~~~l~~ia~~~~ 676 (842)
.+|++++. ++. ..+.+.+..|+....|.+||+.. +++..++...+... ..+++++++.+...
T Consensus 280 rii~~t~~-~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~-- 356 (457)
T PRK11361 280 RIIAATNR-DLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAW-- 356 (457)
T ss_pred EEEEeCCC-CHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcC--
Confidence 78888875 221 23455666777667788999863 66666655555422 25788888877654
Q ss_pred HHhcCHHHHHHHHHHHHHHH
Q 003175 677 AISGDARRALEICRRAAEIA 696 (842)
Q Consensus 677 ~~~Gd~R~al~ll~~A~~~A 696 (842)
...||+|+..+++++|+..+
T Consensus 357 ~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 357 SWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred CCCCcHHHHHHHHHHHHHhC
Confidence 36899999999999888654
No 257
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.70 E-value=8.3e-08 Score=104.32 Aligned_cols=130 Identities=22% Similarity=0.216 Sum_probs=79.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
..++||+|++|||||+|+.++++++.... ..+++++... ++..+........ ......+..++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g-------~~V~y~t~~~------l~~~l~~~~~~~~---~~~~~~~~~l~- 245 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRG-------KSVIYRTADE------LIEILREIRFNND---KELEEVYDLLI- 245 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCC-------CeEEEEEHHH------HHHHHHHHHhccc---hhHHHHHHHhc-
Confidence 47899999999999999999999997531 5688887544 3333332211110 11111122221
Q ss_pred cccCCCCCCCCcEEEEEecCcccccC--ChHHHHHhhcCCCCCCCcEEEEEEeCCC--CCccccchhhhccCCc--eeEE
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTR--NQSVLYNILDWPTKPNSKLIVIGIANTM--DLPEKLLPRISSRMGV--QRLC 640 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~--~~~~L~~ll~~~~~~~~~vivI~~tn~~--dl~~~l~~~l~sR~~~--~~i~ 640 (842)
..-+|||||+...... .++.|+++++.....+.+++| +||.. ++.+.+..++.||+.. ..|.
T Consensus 246 ----------~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIi--TSNl~~~el~~~~~eri~SRL~~~~~~i~ 313 (329)
T PRK06835 246 ----------NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMII--STNLSLEELLKTYSERISSRLLGNFTLLK 313 (329)
T ss_pred ----------cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEE--ECCCCHHHHHHHHhHHHHHHHHcCCEEEE
Confidence 3469999999877543 367899999855333334433 67752 2334456778888743 4466
Q ss_pred ecCCC
Q 003175 641 FGPYN 645 (842)
Q Consensus 641 f~p~~ 645 (842)
|..-+
T Consensus 314 ~~G~d 318 (329)
T PRK06835 314 FYGED 318 (329)
T ss_pred ecCcC
Confidence 65444
No 258
>PF14516 AAA_35: AAA-like domain
Probab=98.70 E-value=8.8e-06 Score=89.39 Aligned_cols=195 Identities=22% Similarity=0.275 Sum_probs=115.8
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC-----CCh
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL-----ASP 536 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~-----~s~ 536 (842)
.+.|...-+.+.+.|.. +|..++|.||+.+|||+|+..+++.+... .+.+++||+..+ .+.
T Consensus 13 Yi~R~~~e~~~~~~i~~-------~G~~~~I~apRq~GKTSll~~l~~~l~~~-------~~~~v~id~~~~~~~~~~~~ 78 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQ-------PGSYIRIKAPRQMGKTSLLLRLLERLQQQ-------GYRCVYIDLQQLGSAIFSDL 78 (331)
T ss_pred ccCchHHHHHHHHHHhc-------CCCEEEEECcccCCHHHHHHHHHHHHHHC-------CCEEEEEEeecCCCcccCCH
Confidence 44666444555555433 26889999999999999999999998754 277899998864 345
Q ss_pred HHHHHHHHHHHhC-CCCC-------------HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh--HHHHHh
Q 003175 537 ENIYRVIYEALSG-HRVS-------------WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ--SVLYNI 600 (842)
Q Consensus 537 ~~~~~~i~~~l~g-~~~~-------------~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~--~~L~~l 600 (842)
..++..+...+.. .... .......+++++- ....+++||+|||+|.+....+ +.++.+
T Consensus 79 ~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll------~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~ 152 (331)
T PF14516_consen 79 EQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLL------KQIDKPLVLFIDEIDRLFEYPQIADDFFGL 152 (331)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHH------hcCCCCEEEEEechhhhccCcchHHHHHHH
Confidence 5677776655532 1110 1112222333221 1225889999999999987432 223333
Q ss_pred hc-CCCC-----CCCcEEEEEEeCCCCCccccchhhhccCCc-eeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHH
Q 003175 601 LD-WPTK-----PNSKLIVIGIANTMDLPEKLLPRISSRMGV-QRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASR 673 (842)
Q Consensus 601 l~-~~~~-----~~~~vivI~~tn~~dl~~~l~~~l~sR~~~-~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~ 673 (842)
++ |... ...++.+|++..+.... ....-.|-|.+ ..|.+++.+.+|+..+++.+-. .+.+..++.+
T Consensus 153 LR~~~~~~~~~~~~~~L~li~~~~t~~~~--~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~---~~~~~~~~~l-- 225 (331)
T PF14516_consen 153 LRSWYEQRKNNPIWQKLRLILAGSTEDYI--ILDINQSPFNIGQPIELPDFTPEEVQELAQRYGL---EFSQEQLEQL-- 225 (331)
T ss_pred HHHHHHhcccCcccceEEEEEecCccccc--ccCCCCCCcccccceeCCCCCHHHHHHHHHhhhc---cCCHHHHHHH--
Confidence 32 3221 12456666555443211 11112344543 5688999999999988776532 3555555554
Q ss_pred HHHHHhcCHHH
Q 003175 674 KVAAISGDARR 684 (842)
Q Consensus 674 ~~~~~~Gd~R~ 684 (842)
.....|-+--
T Consensus 226 -~~~tgGhP~L 235 (331)
T PF14516_consen 226 -MDWTGGHPYL 235 (331)
T ss_pred -HHHHCCCHHH
Confidence 4445788753
No 259
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.70 E-value=1.4e-07 Score=98.13 Aligned_cols=129 Identities=19% Similarity=0.252 Sum_probs=77.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhc
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLD 567 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~ 567 (842)
.+++|+|++|||||+|+.++++++.... ..+++++.. ++...+.........+ ...+.+.+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g-------~~v~~it~~------~l~~~l~~~~~~~~~~----~~~~l~~l~- 161 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRG-------KSVLIITVA------DIMSAMKDTFSNSETS----EEQLLNDLS- 161 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEEHH------HHHHHHHHHHhhcccc----HHHHHHHhc-
Confidence 5799999999999999999999997531 446676532 3344443332110111 111222221
Q ss_pred ccCCCCCCCCcEEEEEecCcccccC--ChHHHHHhhcCCCCCCCcEEEEEEeCCC--CCccccchhhhccCC---ceeEE
Q 003175 568 GKKIGKEDDRPCILLIDELDLLVTR--NQSVLYNILDWPTKPNSKLIVIGIANTM--DLPEKLLPRISSRMG---VQRLC 640 (842)
Q Consensus 568 ~~~~~~~~~~~~IlilDEid~L~~~--~~~~L~~ll~~~~~~~~~vivI~~tn~~--dl~~~l~~~l~sR~~---~~~i~ 640 (842)
...+|||||++..... ...+|+.+++.......+++| +||-. ++...+..++.+|+. ...|.
T Consensus 162 ---------~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tii--tSNl~~~~l~~~~g~ri~sRl~~~~~~~i~ 230 (244)
T PRK07952 162 ---------NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGM--LTNSNMEEMTKLLGERVMDRMRLGNSLWVI 230 (244)
T ss_pred ---------cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEE--eCCCCHHHHHHHhChHHHHHHHHCCceEEE
Confidence 4469999999987643 256899999854322333333 77752 334455667778773 14566
Q ss_pred ecCCC
Q 003175 641 FGPYN 645 (842)
Q Consensus 641 f~p~~ 645 (842)
|.-.+
T Consensus 231 f~~~s 235 (244)
T PRK07952 231 FNWDS 235 (244)
T ss_pred eeCCc
Confidence 76433
No 260
>PF05729 NACHT: NACHT domain
Probab=98.68 E-value=3.7e-07 Score=89.57 Aligned_cols=152 Identities=20% Similarity=0.340 Sum_probs=88.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChH---HHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPE---NIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~---~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
.++|+|++|+|||++++.++..+......... ...++++++....... .+...|...+..... .....+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~~~~ 77 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-FPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEELLQELL 77 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCccccc-ceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHHHHHHHH
Confidence 57899999999999999999998865432211 1235566666554432 334444433322111 1111122222
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCChH--------HHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCc-
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRNQS--------VLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGV- 636 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~~~--------~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~- 636 (842)
. ....++||||-+|.+....+. .|..++.....++.+++| +++.... +.+...+..
T Consensus 78 ~--------~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lii--t~r~~~~-----~~~~~~~~~~ 142 (166)
T PF05729_consen 78 E--------KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLII--TSRPRAF-----PDLRRRLKQA 142 (166)
T ss_pred H--------cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEE--EEcCChH-----HHHHHhcCCC
Confidence 1 135689999999999875432 455555432233445444 4443211 113333322
Q ss_pred eeEEecCCCHHHHHHHHHHHhcC
Q 003175 637 QRLCFGPYNHQQLQEIISSRLKG 659 (842)
Q Consensus 637 ~~i~f~p~~~~e~~~Il~~~l~~ 659 (842)
..+.+.+++.+++.+++...+++
T Consensus 143 ~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 143 QILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred cEEEECCCCHHHHHHHHHHHhhc
Confidence 46899999999999999988753
No 261
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2.1e-06 Score=89.63 Aligned_cols=148 Identities=21% Similarity=0.343 Sum_probs=96.4
Q ss_pred CcEEEEEecCcccccCC------------hHHHHHhhcCCC-------CCCCcEEEEEEeCC-CCCccccchhhhccCCc
Q 003175 577 RPCILLIDELDLLVTRN------------QSVLYNILDWPT-------KPNSKLIVIGIANT-MDLPEKLLPRISSRMGV 636 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~------------~~~L~~ll~~~~-------~~~~~vivI~~tn~-~dl~~~l~~~l~sR~~~ 636 (842)
+..||||||||.++.+. |..|+-+++..+ ....++.||++.-- +.-|..|.|.|..||.
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfP- 328 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFP- 328 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCc-
Confidence 34599999999998653 344666665432 23456788865431 3346788999999999
Q ss_pred eeEEecCCCHHHHHHHHHHHh----c---------Ccc-cCcHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHH
Q 003175 637 QRLCFGPYNHQQLQEIISSRL----K---------GIE-AFEKQAIEFASRKVAAISG-----DARRALEICRRAAEIAD 697 (842)
Q Consensus 637 ~~i~f~p~~~~e~~~Il~~~l----~---------~~~-~~~~~~l~~ia~~~~~~~G-----d~R~al~ll~~A~~~A~ 697 (842)
.++.+.+++.+++..||..-- + +.. .|++++++.+|+.....+. .+|+...++.+..+-.-
T Consensus 329 IRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediS 408 (444)
T COG1220 329 IRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDIS 408 (444)
T ss_pred eEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhC
Confidence 489999999999999986421 1 112 7999999999987755443 25666666665554321
Q ss_pred HHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhC
Q 003175 698 YRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
.+ ........-.|+.+-|..-+..+..+
T Consensus 409 Fe-------A~d~~g~~v~Id~~yV~~~l~~l~~n 436 (444)
T COG1220 409 FE-------APDMSGQKVTIDAEYVEEKLGDLVAN 436 (444)
T ss_pred cc-------CCcCCCCeEEEcHHHHHHHHHHHhcc
Confidence 11 11111234567888888777665443
No 262
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.68 E-value=1.4e-07 Score=107.52 Aligned_cols=137 Identities=14% Similarity=0.200 Sum_probs=88.1
Q ss_pred CcEEEEEecCcccccCChHHHHHhhcCCCC----------CCCcEEEEEEeCCCC---Cc---------------cccch
Q 003175 577 RPCILLIDELDLLVTRNQSVLYNILDWPTK----------PNSKLIVIGIANTMD---LP---------------EKLLP 628 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~~~~L~~ll~~~~~----------~~~~vivI~~tn~~d---l~---------------~~l~~ 628 (842)
...+|||||++.+....++.|.+.++.... ...++.||+++|... +. .++..
T Consensus 294 ~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~ 373 (506)
T PRK09862 294 HNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSG 373 (506)
T ss_pred cCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCH
Confidence 447999999999988888899988864321 145689999999742 11 25677
Q ss_pred hhhccCCceeEEecCCCHHHH-------------H-HHHHHHhc------Ccc------------cCcHHHHHHHHHHHH
Q 003175 629 RISSRMGVQRLCFGPYNHQQL-------------Q-EIISSRLK------GIE------------AFEKQAIEFASRKVA 676 (842)
Q Consensus 629 ~l~sR~~~~~i~f~p~~~~e~-------------~-~Il~~~l~------~~~------------~~~~~~l~~ia~~~~ 676 (842)
.+.+||++ .+.+++++.+++ . .++..+-. ..+ .+++++.+++.....
T Consensus 374 plLDRfdL-~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~ 452 (506)
T PRK09862 374 PFLDRFDL-SLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLI 452 (506)
T ss_pred hHHhhccE-EEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999994 677777654322 1 11111100 000 122333333333222
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHH
Q 003175 677 AISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQ 727 (842)
Q Consensus 677 ~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~ 727 (842)
...-..|....+++-|..+|..+ +...|+.+||.+|+.
T Consensus 453 ~~~lS~Ra~~rlLrvARTiADL~-------------g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 453 HLGLSIRAWQRLLKVARTIADID-------------QSDIITRQHLQEAVS 490 (506)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHc-------------CCCCCCHHHHHHHHH
Confidence 22336888888899998888876 478899999999987
No 263
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.67 E-value=7.1e-08 Score=91.24 Aligned_cols=119 Identities=24% Similarity=0.260 Sum_probs=66.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
+..++|+||||||||++++.++..+.... ..++++++............ ................+...+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 72 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALA 72 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHH
Confidence 57899999999999999999999987431 24788888765543211110 0000100000011111122222
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCChHHHHHh-----hcCCCCCCCcEEEEEEeCC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNI-----LDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~l-----l~~~~~~~~~vivI~~tn~ 619 (842)
.+.. ..+.||||||++.+.......+... ............+|+++|.
T Consensus 73 ~~~~-----~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 73 LARK-----LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHh-----cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 2211 1358999999999988765544332 0111123456788888884
No 264
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=4.4e-07 Score=99.52 Aligned_cols=153 Identities=20% Similarity=0.334 Sum_probs=102.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
-.++||.||||+|||+||-.++..-. |+||.|- ++.++. |. +-..-...+...|.
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~----------FPFvKii-----Spe~mi--------G~--sEsaKc~~i~k~F~ 592 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSD----------FPFVKII-----SPEDMI--------GL--SESAKCAHIKKIFE 592 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcC----------CCeEEEe-----ChHHcc--------Cc--cHHHHHHHHHHHHH
Confidence 46899999999999999988877644 8898874 222211 21 11223456677777
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCC------h----HHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCc
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRN------Q----SVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGV 636 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~------~----~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~ 636 (842)
++.+ +.-.||+||+++.|.... . +.|.-++....-.+.++.|+|+|.+.++++.+ .+.+.|+
T Consensus 593 DAYk-----S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m--~i~~~F~- 664 (744)
T KOG0741|consen 593 DAYK-----SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEM--GILDCFS- 664 (744)
T ss_pred Hhhc-----CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHc--CHHHhhh-
Confidence 6643 355899999999987632 2 33444444433446689999988764443333 4566776
Q ss_pred eeEEecCCCH-HHHHHHHHHHhcCcccCcHHHHHHHHHHHH
Q 003175 637 QRLCFGPYNH-QQLQEIISSRLKGIEAFEKQAIEFASRKVA 676 (842)
Q Consensus 637 ~~i~f~p~~~-~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~ 676 (842)
..|.+|.++. +++.++|... +.|.++.++.++....
T Consensus 665 ~~i~Vpnl~~~~~~~~vl~~~----n~fsd~~~~~~~~~~~ 701 (744)
T KOG0741|consen 665 STIHVPNLTTGEQLLEVLEEL----NIFSDDEVRAIAEQLL 701 (744)
T ss_pred heeecCccCchHHHHHHHHHc----cCCCcchhHHHHHHHh
Confidence 5899999877 8888887644 4677877777766543
No 265
>PF14629 ORC4_C: Origin recognition complex (ORC) subunit 4 C-terminus
Probab=98.63 E-value=1.1e-06 Score=89.74 Aligned_cols=151 Identities=17% Similarity=0.091 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHH
Q 003175 667 AIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSK 746 (842)
Q Consensus 667 ~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~k 746 (842)
.+..+.+.....+.+++...+.+-.++.... ...+.++..++..+......+.....+.+||..+.
T Consensus 40 ~~~~~L~~~~~~~~~~~~l~~~~~~~v~~l~--------------~~~~~l~~~~~~~~~~~~~~d~~~~~l~~LS~LEL 105 (203)
T PF14629_consen 40 NVKRLLRKLYYTSKSIRSLKNSLIPAVSRLS--------------PSSPFLTASDFFSANSNQSPDSKLSLLKSLSVLEL 105 (203)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhcc--------------ccCCCCCHHHHHHHHHhhCCCchhhHhccCCHHHH
Confidence 4444444444556788766666544442221 13468999999988887777778888999999999
Q ss_pred HHHHHHHHHHHHcCCcceeHHHHHHHHHHHHhhcCCC--------CCCHHHHHHHHHHhcccceEEe-cCC----CCCCc
Q 003175 747 IFLTAMVYELYKTGMGETNFEKLAMTVSSLCTSNGEI--------FPSWDALLRVGCKLGECRIILC-EPG----SRHRL 813 (842)
Q Consensus 747 liL~a~~~~~~~~g~~~~~~~~v~~~y~~~~~~~~~~--------~~~~~~~~~~~~~L~~~~li~~-~~g----~~~r~ 813 (842)
.+|+|+.++. +.-...++|..+|++|..+++..+.. ..++..+.++++.|..+|||.. ..+ ....+
T Consensus 106 ~LLIa~~rl~-~~~~~~~NF~~vy~EY~~~~~~~~~~~~~~~~~~~~~k~v~~~a~E~L~~l~Ll~~~~~~~~~~~~~e~ 184 (203)
T PF14629_consen 106 CLLIAAARLI-KGYEETFNFEMVYDEYKKFAKSYNSSSAIVGTIKVWSKPVALKAWEHLLSLELLKPNYDGSSNNVQKEF 184 (203)
T ss_pred HHHHHHHHHH-hccCCCccHHHHHHHHHHHHHhhccccccccccccCCHHHHHHHHHHHHHCCCceecccCCCCccCccc
Confidence 9999999987 33225899999999999999988766 4578899999999999999998 211 23567
Q ss_pred eEEEEecCHHHHHHHHhcC
Q 003175 814 QKLQLNFPSDDVAFALKDS 832 (842)
Q Consensus 814 ~~i~l~~~~~dv~~al~~~ 832 (842)
++++|.++.++|..+++++
T Consensus 185 r~~~l~it~~el~~~v~~~ 203 (203)
T PF14629_consen 185 RMVQLDITLEELREAVKKH 203 (203)
T ss_pred eEEEEeCCHHHHHHHHhcC
Confidence 9999999999999999763
No 266
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.62 E-value=7.2e-07 Score=93.59 Aligned_cols=208 Identities=20% Similarity=0.211 Sum_probs=131.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.+++...-++.+...-+.... ....+||.|..||||-.++++.-....+. ..+|+-+||..+.+.
T Consensus 204 ~~~v~~S~~mk~~v~qA~k~Am----lDAPLLI~GeTGTGKdLlAkaCH~~S~R~-------~~pFlalNCA~lPe~--- 269 (511)
T COG3283 204 EQIVAVSPKMKHVVEQAQKLAM----LDAPLLITGETGTGKDLLAKACHLASPRH-------SKPFLALNCASLPED--- 269 (511)
T ss_pred HHHhhccHHHHHHHHHHHHhhc----cCCCeEEecCCCchHHHHHHHHhhcCccc-------CCCeeEeecCCCchh---
Confidence 3455555555555444333222 34569999999999999998654433321 146999999998763
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------CCCcE
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--------PNSKL 611 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--------~~~~v 611 (842)
.....++|+..+....... |..+ ...-++||||..+...-|..|+.+++..+. -...|
T Consensus 270 --~aEsElFG~apg~~gk~Gf----fE~A--------ngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdV 335 (511)
T COG3283 270 --AAESELFGHAPGDEGKKGF----FEQA--------NGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDV 335 (511)
T ss_pred --HhHHHHhcCCCCCCCccch----hhhc--------cCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEE
Confidence 3344566766542222222 2222 346789999999998888888888865432 13457
Q ss_pred EEEEEeCCCCCccc-----cchhhhccCCceeEEecCCCH--HHH---HHHHHHHhc-C----cccCcHHHHHHHHHHHH
Q 003175 612 IVIGIANTMDLPEK-----LLPRISSRMGVQRLCFGPYNH--QQL---QEIISSRLK-G----IEAFEKQAIEFASRKVA 676 (842)
Q Consensus 612 ivI~~tn~~dl~~~-----l~~~l~sR~~~~~i~f~p~~~--~e~---~~Il~~~l~-~----~~~~~~~~l~~ia~~~~ 676 (842)
-||++|.. ++.+. +-..+--|+....+++||+-. +++ .+.+.+.+. + .+.++++.+.++.+.
T Consensus 336 RVIcatq~-nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y-- 412 (511)
T COG3283 336 RVICATQV-NLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY-- 412 (511)
T ss_pred EEEecccc-cHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc--
Confidence 88887754 33222 223444577766788888744 333 333333222 2 247888888887654
Q ss_pred HHhcCHHHHHHHHHHHHHHHHH
Q 003175 677 AISGDARRALEICRRAAEIADY 698 (842)
Q Consensus 677 ~~~Gd~R~al~ll~~A~~~A~~ 698 (842)
...|++|+.-+.+.+|..+.+.
T Consensus 413 ~WpGNVRqL~N~iyRA~s~~Eg 434 (511)
T COG3283 413 AWPGNVRQLKNAIYRALTLLEG 434 (511)
T ss_pred CCCccHHHHHHHHHHHHHHhcc
Confidence 4689999999999999988764
No 267
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.61 E-value=4.5e-08 Score=103.98 Aligned_cols=161 Identities=19% Similarity=0.323 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHH
Q 003175 468 EMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEAL 547 (842)
Q Consensus 468 e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l 547 (842)
+..+...++...+.. +.++||+||+|||||++++.+++.+... .+....+++...++...+.. .+
T Consensus 18 dt~r~~~ll~~l~~~----~~pvLl~G~~GtGKT~li~~~l~~l~~~-------~~~~~~~~~s~~Tts~~~q~----~i 82 (272)
T PF12775_consen 18 DTVRYSYLLDLLLSN----GRPVLLVGPSGTGKTSLIQNFLSSLDSD-------KYLVITINFSAQTTSNQLQK----II 82 (272)
T ss_dssp HHHHHHHHHHHHHHC----TEEEEEESSTTSSHHHHHHHHHHCSTTC-------CEEEEEEES-TTHHHHHHHH----CC
T ss_pred HHHHHHHHHHHHHHc----CCcEEEECCCCCchhHHHHhhhccCCcc-------ccceeEeeccCCCCHHHHHH----HH
Confidence 344555666666654 4789999999999999999887765422 13456677766554432222 11
Q ss_pred hCCCCCHHHHHHHHHHHhhc--ccCCCCCCCCcEEEEEecCcccccCC------hHHHHHhhcCC---CCCC------Cc
Q 003175 548 SGHRVSWKKALHSLNERFLD--GKKIGKEDDRPCILLIDELDLLVTRN------QSVLYNILDWP---TKPN------SK 610 (842)
Q Consensus 548 ~g~~~~~~~~~~~L~~~f~~--~~~~~~~~~~~~IlilDEid~L~~~~------~~~L~~ll~~~---~~~~------~~ 610 (842)
.+ .+.. ...++...++..|+||||+..-.... -++|.++++.. .... ..
T Consensus 83 e~--------------~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~ 148 (272)
T PF12775_consen 83 ES--------------KLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIED 148 (272)
T ss_dssp CT--------------TECECTTEEEEEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECS
T ss_pred hh--------------cEEcCCCCCCCCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEee
Confidence 11 1111 11122334577999999998776542 26778888643 1111 35
Q ss_pred EEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcC
Q 003175 611 LIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKG 659 (842)
Q Consensus 611 vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~ 659 (842)
+.+||+.+...-...+.+|+.+.|. .+.++.++.+++..|....+..
T Consensus 149 i~~vaa~~p~~Gr~~is~R~~r~f~--i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 149 IQFVAAMNPTGGRNPISPRFLRHFN--ILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp EEEEEEESSTTT--SHHHHHHTTEE--EEE----TCCHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCCCCCChHHhhheE--EEEecCCChHHHHHHHHHHHhh
Confidence 7788888753323457788888884 5999999999999999888763
No 268
>PRK06921 hypothetical protein; Provisional
Probab=98.61 E-value=4.2e-07 Score=96.37 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=72.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
+.+++|+|++|+|||+|+.++++++.... ...++|++... ++..+...+ ......+.. +
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~------g~~v~y~~~~~------l~~~l~~~~-------~~~~~~~~~-~- 175 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK------GVPVLYFPFVE------GFGDLKDDF-------DLLEAKLNR-M- 175 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc------CceEEEEEHHH------HHHHHHHHH-------HHHHHHHHH-h-
Confidence 57899999999999999999999987531 14577877432 233332221 111111221 1
Q ss_pred cccCCCCCCCCcEEEEEecCcc-ccc------CChHHHHHhhcCCCCCCCcEEEEEEeCCC--CCc---cccchhhhccC
Q 003175 567 DGKKIGKEDDRPCILLIDELDL-LVT------RNQSVLYNILDWPTKPNSKLIVIGIANTM--DLP---EKLLPRISSRM 634 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~-L~~------~~~~~L~~ll~~~~~~~~~vivI~~tn~~--dl~---~~l~~~l~sR~ 634 (842)
....||||||++. +.. ..++.|+.+++.......++ |.+||.. ++. +++-.||..|+
T Consensus 176 ---------~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~t--Iitsn~~~~el~~~~~~l~sRi~~r~ 244 (266)
T PRK06921 176 ---------KKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPI--LISSELTIDELLDIDEALGSRIVEMC 244 (266)
T ss_pred ---------cCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCE--EEECCCCHHHHhhhhhHHHHHHHHhc
Confidence 1447999999954 211 12467899998654333444 3367752 111 23333444445
Q ss_pred CceeEEecCCC
Q 003175 635 GVQRLCFGPYN 645 (842)
Q Consensus 635 ~~~~i~f~p~~ 645 (842)
....|.|...+
T Consensus 245 ~~~~i~~~g~s 255 (266)
T PRK06921 245 KDYLVIIKGDS 255 (266)
T ss_pred cCeEEEecCcc
Confidence 43567776543
No 269
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.56 E-value=2.8e-08 Score=90.89 Aligned_cols=119 Identities=26% Similarity=0.280 Sum_probs=64.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhc-
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLD- 567 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~- 567 (842)
++||.|+||+|||++++++++.++ ..|..|.+.....+.++. |..+--.+. ..|.-
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~----------~~f~RIq~tpdllPsDi~--------G~~v~~~~~-----~~f~~~ 57 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG----------LSFKRIQFTPDLLPSDIL--------GFPVYDQET-----GEFEFR 57 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT------------EEEEE--TT--HHHHH--------EEEEEETTT-----TEEEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcC----------CceeEEEecCCCCcccce--------eeeeeccCC-----CeeEee
Confidence 489999999999999999999987 347778776544443332 321100000 00100
Q ss_pred ccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC--------CCCCcEEEEEEeCCCCCc--cccchhhhccCC
Q 003175 568 GKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT--------KPNSKLIVIGIANTMDLP--EKLLPRISSRMG 635 (842)
Q Consensus 568 ~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~--------~~~~~vivI~~tn~~dl~--~~l~~~l~sR~~ 635 (842)
..++ -.-|+++|||.....+.|+.|++.+.... .-..++.||++.|..+.. ..|...+.+||-
T Consensus 58 ~GPi-----f~~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 58 PGPI-----FTNILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp E-TT------SSEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred cChh-----hhceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 0011 12499999999999999999999986331 123468999999975432 355667777874
No 270
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.54 E-value=5.8e-08 Score=92.60 Aligned_cols=132 Identities=20% Similarity=0.309 Sum_probs=86.0
Q ss_pred CcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHH
Q 003175 464 CRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVI 543 (842)
Q Consensus 464 gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i 543 (842)
|....++++.+.+...... ...++|+|++||||+++|+++....... .-.|+.++|.....
T Consensus 2 G~S~~~~~l~~~l~~~a~~----~~pvli~GE~GtGK~~~A~~lh~~~~~~-------~~~~~~~~~~~~~~-------- 62 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKS----SSPVLITGEPGTGKSLLARALHRYSGRA-------NGPFIVIDCASLPA-------- 62 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCS----SS-EEEECCTTSSHHHHHHCCHHTTTTC-------CS-CCCCCHHCTCH--------
T ss_pred CCCHHHHHHHHHHHHHhCC----CCcEEEEcCCCCCHHHHHHHHHhhcCcc-------CCCeEEechhhCcH--------
Confidence 5667788888888887653 4679999999999999999887754421 12356666665330
Q ss_pred HHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCc
Q 003175 544 YEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLP 623 (842)
Q Consensus 544 ~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~ 623 (842)
+.+.. . ....|+|+|+|.|....|..|..+++... ..++-+|+++.. ++.
T Consensus 63 ---------------~~l~~----a--------~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~--~~~~RlI~ss~~-~l~ 112 (138)
T PF14532_consen 63 ---------------ELLEQ----A--------KGGTLYLKNIDRLSPEAQRRLLDLLKRQE--RSNVRLIASSSQ-DLE 112 (138)
T ss_dssp ---------------HHHHH----C--------TTSEEEEECGCCS-HHHHHHHHHHHHHCT--TTTSEEEEEECC--CC
T ss_pred ---------------HHHHH----c--------CCCEEEECChHHCCHHHHHHHHHHHHhcC--CCCeEEEEEeCC-CHH
Confidence 11111 1 34689999999999988999998887533 333444445543 222
Q ss_pred -----cccchhhhccCCceeEEecCC
Q 003175 624 -----EKLLPRISSRMGVQRLCFGPY 644 (842)
Q Consensus 624 -----~~l~~~l~sR~~~~~i~f~p~ 644 (842)
..+.+.+..||....|.+||+
T Consensus 113 ~l~~~~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 113 ELVEEGRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp CHHHHSTHHHHHHHHCSTCEEEE---
T ss_pred HHhhccchhHHHHHHhCCCEEeCCCC
Confidence 256778888998888999885
No 271
>KOG1886 consensus BAH domain proteins [Transcription]
Probab=98.51 E-value=4.6e-08 Score=106.71 Aligned_cols=98 Identities=22% Similarity=0.412 Sum_probs=84.7
Q ss_pred hhhhhhhhceeeccC-CceEEEEEeecCCcccccCCCCCcc---cccccccCCccccccchhccceeeeCccccccccc-
Q 003175 266 DLWAANIQSMWKEVD-GNYWCRVFWYMIPEETAAGRQPHNL---RRELYRTNDFANIEMESIIRHCSVMSPKDFVKAND- 340 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~-g~~~~~~~w~~~peEt~~~~~~~~~---~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~~~~- 340 (842)
..|+++|..||.+.. +..-+.|+|||||||+..+....+. .+|+|++.|+|++..++|.++|.|.++..|.....
T Consensus 67 pPyvaii~~i~a~~~g~~~k~ev~W~YrPee~~~~~~~~~~a~~~relF~SfH~De~~A~ti~~rC~V~fvp~~kqlp~~ 146 (464)
T KOG1886|consen 67 PPYVAIIEDIYAQERGGNVKVEVQWFYRPEESEGGGSGKWGAKQPRELFLSFHEDEAFAETILHRCKVHFVPAYKQLPNR 146 (464)
T ss_pred CCeeEEEeeeeccccCCCcceecccccCCCccCCCCCCCcccCCCccccccccccchhhhhhcccceeeecccccccccc
Confidence 458999999999866 5889999999999998876544433 45999999999999999999999999999998877
Q ss_pred CCCCEEEEeeEEecCccceeecc
Q 003175 341 QGDDIFLCEYEYDIHWHSFKRIA 363 (842)
Q Consensus 341 ~~~~~~~C~~~y~~~~~~fk~i~ 363 (842)
.+.+-|+|+.-||.-+..|.+..
T Consensus 147 ~~~~~f~~r~vYd~~~~~~~~~~ 169 (464)
T KOG1886|consen 147 VGHESFICRRVYDAVTSKLRKLR 169 (464)
T ss_pred CCCCCcccccccccccccccCcc
Confidence 57889999999999988887654
No 272
>PRK08181 transposase; Validated
Probab=98.49 E-value=1.8e-06 Score=91.22 Aligned_cols=127 Identities=17% Similarity=0.266 Sum_probs=74.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
+.+++|+||+|||||+|+.++++++.... ..+++++.. +++..+...... ..... .+. .+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g-------~~v~f~~~~------~L~~~l~~a~~~--~~~~~---~l~-~l- 165 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENG-------WRVLFTRTT------DLVQKLQVARRE--LQLES---AIA-KL- 165 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcC-------CceeeeeHH------HHHHHHHHHHhC--CcHHH---HHH-HH-
Confidence 57799999999999999999999887531 456777643 233444332211 11111 111 12
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCC--hHHHHHhhcCCCCCCCcEEEEEEeCCC--CC----cc-ccchhhhccCCc-
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRN--QSVLYNILDWPTKPNSKLIVIGIANTM--DL----PE-KLLPRISSRMGV- 636 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~--~~~L~~ll~~~~~~~~~vivI~~tn~~--dl----~~-~l~~~l~sR~~~- 636 (842)
.++-+|||||++.+.... +..|+++++.... ... +|.+||.. ++ .+ .+-.++.+|+-.
T Consensus 166 ---------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~-~~s--~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~ 233 (269)
T PRK08181 166 ---------DKFDLLILDDLAYVTKDQAETSVLFELISARYE-RRS--ILITANQPFGEWNRVFPDPAMTLAAVDRLVHH 233 (269)
T ss_pred ---------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHh-CCC--EEEEcCCCHHHHHHhcCCccchhhHHHhhhcC
Confidence 145799999999886643 4679999985433 233 44477753 11 11 122345566532
Q ss_pred -eeEEecCCC
Q 003175 637 -QRLCFGPYN 645 (842)
Q Consensus 637 -~~i~f~p~~ 645 (842)
..|.|..-+
T Consensus 234 ~~~i~~~g~s 243 (269)
T PRK08181 234 ATIFEMNVES 243 (269)
T ss_pred ceEEecCCcc
Confidence 346666544
No 273
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.45 E-value=3.7e-06 Score=98.07 Aligned_cols=205 Identities=14% Similarity=0.134 Sum_probs=134.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
-++++|.|++||||+++++.+..-|... .+|+.+--. .+...++ |. . .|...+.
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~~--------~p~r~~p~~--~t~~~L~--------Gg----~----Dl~~~l~ 78 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPAG--------TPLRRLPPG--IADDRLL--------GG----L----DLAATLR 78 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCCC--------CCcccCCCC--CcHHHcc--------CC----c----hHHhHhh
Confidence 3679999999999999999998877631 234333211 2221111 20 0 1111221
Q ss_pred cccCC----CCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC----------CCCcEEEEEEeCCCCCccccchhhhc
Q 003175 567 DGKKI----GKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK----------PNSKLIVIGIANTMDLPEKLLPRISS 632 (842)
Q Consensus 567 ~~~~~----~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~----------~~~~vivI~~tn~~dl~~~l~~~l~s 632 (842)
..... .-......||||||+..+..+-++.|++-++.... -..+++||++-|..+..+.+.+.+.+
T Consensus 79 ~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD 158 (584)
T PRK13406 79 AGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD 158 (584)
T ss_pred cCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh
Confidence 11110 00122457999999999998889999999875421 23678999874443445678889999
Q ss_pred cCCceeEEecCCCHHHHH-------HHHHHHhc-CcccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhh
Q 003175 633 RMGVQRLCFGPYNHQQLQ-------EIISSRLK-GIEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQ 703 (842)
Q Consensus 633 R~~~~~i~f~p~~~~e~~-------~Il~~~l~-~~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~ 703 (842)
||.+ .|.+..++..+.. +|+..+-. ....+++..+++++..+....- ..|-.+.+++-|..+|..+
T Consensus 159 Rf~l-~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~---- 233 (584)
T PRK13406 159 RLAF-HLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALA---- 233 (584)
T ss_pred heEE-EEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHc----
Confidence 9994 7888777665432 34433321 1236788889988877765543 7788888999999998876
Q ss_pred ccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 704 TSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 704 ~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
+...|+.+||.+|+.-++.
T Consensus 234 ---------Gr~~V~~~dv~~Aa~lvL~ 252 (584)
T PRK13406 234 ---------GRTAVEEEDLALAARLVLA 252 (584)
T ss_pred ---------CCCCCCHHHHHHHHHHHHH
Confidence 5788999999999886654
No 274
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.45 E-value=3.3e-07 Score=105.34 Aligned_cols=208 Identities=18% Similarity=0.219 Sum_probs=131.0
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHH
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYR 541 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~ 541 (842)
+.+....+..+...+..... ....++|+|.+||||+++++++....... ..+|+.+||..+.. .
T Consensus 141 lig~s~~~~~~~~~i~~~~~----~~~~vli~ge~g~gk~~~a~~ih~~s~~~-------~~~~i~~~c~~~~~-----~ 204 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAP----SEATVLIHGDSGTGKELVARAIHASSARS-------EKPLVTLNCAALNE-----S 204 (441)
T ss_pred eEecCHHHHHHHHHHhhccC----CCCeEEEEecCCCCHHHHHHHHHHcCCCC-------CCCeeeeeCCCCCH-----H
Confidence 55666666666555543322 25779999999999999999887654321 14699999998653 2
Q ss_pred HHHHHHhCCCCCH-HHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------CCCcEE
Q 003175 542 VIYEALSGHRVSW-KKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--------PNSKLI 612 (842)
Q Consensus 542 ~i~~~l~g~~~~~-~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--------~~~~vi 612 (842)
.+...++|...+. ..........|. .....+|||||++.|....|..|..+++.... ....+.
T Consensus 205 ~~~~~lfg~~~~~~~~~~~~~~g~~~--------~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~r 276 (441)
T PRK10365 205 LLESELFGHEKGAFTGADKRREGRFV--------EADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVR 276 (441)
T ss_pred HHHHHhcCCCCCCcCCCCcCCCCcee--------ECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceE
Confidence 3344444532210 000000000011 12357899999999999889889888864321 012466
Q ss_pred EEEEeCCCCCc-----cccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcCc--------ccCcHHHHHHHHHHHHH
Q 003175 613 VIGIANTMDLP-----EKLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKGI--------EAFEKQAIEFASRKVAA 677 (842)
Q Consensus 613 vI~~tn~~dl~-----~~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~~--------~~~~~~~l~~ia~~~~~ 677 (842)
+|++|+. ++. ..+...+..|+....|.+||+.. +++..++...+... ..+++++++.+... .
T Consensus 277 ii~~t~~-~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~ 353 (441)
T PRK10365 277 LIAATHR-DLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY--D 353 (441)
T ss_pred EEEeCCC-CHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--C
Confidence 7777765 221 23455666677666788899864 46666666665431 24788888876654 3
Q ss_pred HhcCHHHHHHHHHHHHHHH
Q 003175 678 ISGDARRALEICRRAAEIA 696 (842)
Q Consensus 678 ~~Gd~R~al~ll~~A~~~A 696 (842)
..||+|+..+++++|+..+
T Consensus 354 wpgN~reL~~~~~~~~~~~ 372 (441)
T PRK10365 354 WPGNIRELENAVERAVVLL 372 (441)
T ss_pred CCCHHHHHHHHHHHHHHhC
Confidence 5899999999999988754
No 275
>PF13173 AAA_14: AAA domain
Probab=98.42 E-value=7.9e-07 Score=83.60 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=74.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
+..++|+||+|+|||++++.+++.+.. .-.++++|+......... . . + +.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~--------~~~~~yi~~~~~~~~~~~-----~--------~-~----~~~~~~ 55 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLP--------PENILYINFDDPRDRRLA-----D--------P-D----LLEYFL 55 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc--------cccceeeccCCHHHHHHh-----h--------h-h----hHHHHH
Confidence 467899999999999999999988761 134888987653321000 0 0 0 111121
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCH
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNH 646 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~ 646 (842)
+.. .....+|||||++.+.. -...+..+.+.. .+.++++.|.+ ...+.......+..|. ..+.+.|++.
T Consensus 56 ~~~-----~~~~~~i~iDEiq~~~~-~~~~lk~l~d~~--~~~~ii~tgS~-~~~l~~~~~~~l~gr~--~~~~l~Plsf 124 (128)
T PF13173_consen 56 ELI-----KPGKKYIFIDEIQYLPD-WEDALKFLVDNG--PNIKIILTGSS-SSLLSKDIAESLAGRV--IEIELYPLSF 124 (128)
T ss_pred Hhh-----ccCCcEEEEehhhhhcc-HHHHHHHHHHhc--cCceEEEEccc-hHHHhhcccccCCCeE--EEEEECCCCH
Confidence 110 01458999999999853 355666666632 23455554432 2222223334455555 4588999998
Q ss_pred HHH
Q 003175 647 QQL 649 (842)
Q Consensus 647 ~e~ 649 (842)
.|.
T Consensus 125 ~E~ 127 (128)
T PF13173_consen 125 REF 127 (128)
T ss_pred HHh
Confidence 874
No 276
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.39 E-value=9.7e-06 Score=89.18 Aligned_cols=181 Identities=15% Similarity=0.150 Sum_probs=104.8
Q ss_pred HHHHHhhcCCc-ccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH----HHHHHHHHh
Q 003175 474 AFIKGATCDDQ-CLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI----YRVIYEALS 548 (842)
Q Consensus 474 ~~l~~~i~~~~-~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~----~~~i~~~l~ 548 (842)
..|...+.+.. ..+..+.|+|+-|+|||++++.+.+.+.... ...+.++++|+..+....++ +..|...+.
T Consensus 6 ~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~----~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 6 KALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDN----KEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred HHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccc----ccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 33444444321 2478899999999999999999999998651 12367999999988874333 333333332
Q ss_pred CCC----------------------------CCH----------------------------------HHHHHHHHHHhh
Q 003175 549 GHR----------------------------VSW----------------------------------KKALHSLNERFL 566 (842)
Q Consensus 549 g~~----------------------------~~~----------------------------------~~~~~~L~~~f~ 566 (842)
... ... ......+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (325)
T PF07693_consen 82 KHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVEELIS 161 (325)
T ss_pred HhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHHHHHH
Confidence 110 000 000001111111
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCcc------------ccchhhhccC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPE------------KLLPRISSRM 634 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~------------~l~~~l~sR~ 634 (842)
...........+.||||||+|.+.......++..++.... ..++++|.+.+..-+.. ........++
T Consensus 162 ~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~-~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKi 240 (325)
T PF07693_consen 162 KIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLD-FPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKI 240 (325)
T ss_pred HHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcC-CCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhh
Confidence 2112222356789999999999977655555555554322 35677776666421111 1112333343
Q ss_pred CceeEEecCCCHHHHHHHHHHHhcC
Q 003175 635 GVQRLCFGPYNHQQLQEIISSRLKG 659 (842)
Q Consensus 635 ~~~~i~f~p~~~~e~~~Il~~~l~~ 659 (842)
-...+.+|+++..++..++...+..
T Consensus 241 iq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 241 IQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred cCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 3357889999999999998888654
No 278
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.37 E-value=8.1e-08 Score=95.88 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=63.4
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEE----------EEec
Q 003175 461 FLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFV----------EVNG 530 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v----------~in~ 530 (842)
.+.|.+.....|.-+... ++++||+||||||||++++.+..-|........+....+. .++.
T Consensus 4 dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~ 75 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQ 75 (206)
T ss_dssp CSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE-
T ss_pred hhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecC
Confidence 466777666665544432 5789999999999999999998877643221111000000 0000
Q ss_pred ccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhccc---CCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC--
Q 003175 531 LKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGK---KIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT-- 605 (842)
Q Consensus 531 ~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~---~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~-- 605 (842)
..+..++. ..+ ...++.... +-.-+.....||||||+..|...-.+.|..-++...
T Consensus 76 ~Pfr~phh------------s~s-------~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~ 136 (206)
T PF01078_consen 76 RPFRAPHH------------SAS-------EAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVT 136 (206)
T ss_dssp --EEEE-T------------T---------HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEE
T ss_pred CCcccCCC------------CcC-------HHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEE
Confidence 00000000 000 011111110 000011245799999999997666677777775321
Q ss_pred --------CCCCcEEEEEEeCC--------------------CCCccccchhhhccCCceeEEecCCCHH
Q 003175 606 --------KPNSKLIVIGIANT--------------------MDLPEKLLPRISSRMGVQRLCFGPYNHQ 647 (842)
Q Consensus 606 --------~~~~~vivI~~tn~--------------------~dl~~~l~~~l~sR~~~~~i~f~p~~~~ 647 (842)
.-..++.+|+++|. ..+..++...+.+||++ .+.+++.+.+
T Consensus 137 i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi-~v~~~~~~~~ 205 (206)
T PF01078_consen 137 ISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDI-HVEVPRVSYE 205 (206)
T ss_dssp EEETTEEEEEB--EEEEEEE-S------------------------------------------------
T ss_pred EEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccc-cccccccccC
Confidence 11346899999985 12345566667777773 5666665544
No 279
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.36 E-value=1.2e-07 Score=94.93 Aligned_cols=53 Identities=38% Similarity=0.824 Sum_probs=45.2
Q ss_pred ccccccccceeecccc-cccccCccCCCccccccCCCCCCCCCCCCcccc-cccccc
Q 003175 184 EDPEVEECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCE-FCEARK 238 (842)
Q Consensus 184 ~~~~~~~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~-~C~~~~ 238 (842)
...++..|.+|+++.. +.|++||.|+++||.+|+| |..+|.|.|.|. .|....
T Consensus 310 ~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~~~ 364 (381)
T KOG1512|consen 310 KCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCREAT 364 (381)
T ss_pred hhcccHhhhccCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHHhc
Confidence 3455678999998875 7799999999999999999 999999999998 565544
No 280
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.4e-06 Score=94.19 Aligned_cols=26 Identities=42% Similarity=0.552 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
++++|++||||||||+|++.+-.-|.
T Consensus 198 gHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 198 GHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred CCcEEEecCCCCchHHhhhhhcccCC
Confidence 78999999999999999987765553
No 281
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.33 E-value=2.3e-05 Score=85.17 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=47.7
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHh
Q 003175 461 FLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEV 515 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~ 515 (842)
.+.|.++.+++|..++..+..+.......++|.||||+|||++++++++.+..-.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys 106 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYS 106 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence 5889999999999999998875443467889999999999999999999998643
No 282
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.31 E-value=4.6e-05 Score=83.57 Aligned_cols=407 Identities=15% Similarity=0.160 Sum_probs=221.1
Q ss_pred cccccccCCccccccchhccceeeeCcccccccccCCCCEEEEeeEEecCccceeecc-cCCccchhhccCchhhhhccc
Q 003175 306 RRELYRTNDFANIEMESIIRHCSVMSPKDFVKANDQGDDIFLCEYEYDIHWHSFKRIA-DIDKEEEVEDADSDEDWKSSK 384 (842)
Q Consensus 306 ~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~~~~~~~~~~~C~~~y~~~~~~fk~i~-~~~~~~~~e~~~~~~~~~~~~ 384 (842)
.+|+..-.+.+.+|+.+|=+-.+|+..-+-.+.-..|+.|-+.-...-..|.-|+.+. ++..+--=|.- ...-+++
T Consensus 232 fQe~kmQEls~qVPvG~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~~aGLladtYLeAh-~v~~~nk-- 308 (721)
T KOG0482|consen 232 FQEVKMQELSDQVPVGHIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRALKAGLLADTYLEAH-RVVQINK-- 308 (721)
T ss_pred hhhhhHHHHhccCCCCccCceeEEEEecccceecCCCCEEEEeeeecccchhhHHHHHhhhHHHHHHHHh-hhhhhcc--
Confidence 5889998999999999999999999776666555556777776666667788888876 66532110000 0001111
Q ss_pred cCCCCCccccccccccCCCCCCCCCCccccccCCccccccccccccccccCcccccCcccHHHHHHHhccccCCCCCCCC
Q 003175 385 AADSDTDEDMEFEDEDGKHLHTGPSPAHELAANSQRGRFFGLQKIGRKRIPEHVRCHKQTELERAKATLLLATLPKFLPC 464 (842)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~L~~~~~p~~L~g 464 (842)
..++.+-..+. ++..- ..+. .-.-+++ |..+.. +.+.|
T Consensus 309 -~~~~~~~~~~~---------------------~~~~~-------------~~~~--~~d~yek----La~SiA-PEIyG 346 (721)
T KOG0482|consen 309 -KYDNIEKTGEL---------------------EPEEL-------------ELIA--EGDFYEK----LAASIA-PEIYG 346 (721)
T ss_pred -ccccccccccc---------------------cHHHH-------------HHhh--cccHHHH----HHHhhc-hhhcc
Confidence 00000000000 00000 0000 0011222 322223 34678
Q ss_pred cHHHHHHHHHHHHHhhcCCcc------cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHH
Q 003175 465 RNKEMEDITAFIKGATCDDQC------LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPEN 538 (842)
Q Consensus 465 Re~e~~~l~~~l~~~i~~~~~------~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~ 538 (842)
.++..+.|.-.|-........ ..-+|++.|.||+.|+-|++++.+-..+ -+|..|..-..-..
T Consensus 347 heDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapR-----------gvYTTGrGSSGVGL 415 (721)
T KOG0482|consen 347 HEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPR-----------GVYTTGRGSSGVGL 415 (721)
T ss_pred chHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcc-----------cceecCCCCCcccc
Confidence 888888887777665443210 1237899999999999999988765442 35555443221100
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC----------CCC
Q 003175 539 IYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT----------KPN 608 (842)
Q Consensus 539 ~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~----------~~~ 608 (842)
....+...++|+-+ + ++..+. -....|-.|||+|.+.......+..+++..+ .-+
T Consensus 416 TAAVmkDpvTgEM~------------L-EGGALV--LAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLN 480 (721)
T KOG0482|consen 416 TAAVMKDPVTGEMV------------L-EGGALV--LADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLN 480 (721)
T ss_pred chhhhcCCCCCeeE------------e-ccceEE--EccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchh
Confidence 01111111111100 0 000000 0123688999999999888788888876432 225
Q ss_pred CcEEEEEEeCCC----C----Cc--cccchhhhccCCceeEE-----------------------------ecCCCHHHH
Q 003175 609 SKLIVIGIANTM----D----LP--EKLLPRISSRMGVQRLC-----------------------------FGPYNHQQL 649 (842)
Q Consensus 609 ~~vivI~~tn~~----d----l~--~~l~~~l~sR~~~~~i~-----------------------------f~p~~~~e~ 649 (842)
.+..+++++|.. + +. -.|..+|+|||+..-+. |.|++.+-+
T Consensus 481 AR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~m 560 (721)
T KOG0482|consen 481 ARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLM 560 (721)
T ss_pred hhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHH
Confidence 677888888852 1 11 23456888888752222 333444444
Q ss_pred HHHHHHHhcCcccCcHHHHHHHHHHHHH------H-----hcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCccc
Q 003175 650 QEIISSRLKGIEAFEKQAIEFASRKVAA------I-----SGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVG 718 (842)
Q Consensus 650 ~~Il~~~l~~~~~~~~~~l~~ia~~~~~------~-----~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It 718 (842)
+.++...-...+.++++.-+++...+-. + .-.+|..|.|++.+..+|..+. +..|.
T Consensus 561 R~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRl-------------s~~V~ 627 (721)
T KOG0482|consen 561 RRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRL-------------SDSVE 627 (721)
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhh-------------ccccc
Confidence 4444333333345555555555432211 1 2357889999999999998774 46789
Q ss_pred HHHHHHHHHHHhhChH---HH--HHhhCchHHHHHHHHHHHHHHH-cCCcceeHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 003175 719 MADVEAAIQEMFQAPH---IQ--VMKSCSKLSKIFLTAMVYELYK-TGMGETNFEKLAMTVSSLCTSNGEIFPSWDALLR 792 (842)
Q Consensus 719 ~~dv~~A~~~~~~~~~---~~--~l~~ls~~~kliL~a~~~~~~~-~g~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~ 792 (842)
.+||.+|+.-+.-+.. .+ .....+. .-...++++.+.. .|...+.+..+.++ |...|. +..++.+
T Consensus 628 ~~DV~EALRLme~sK~sL~~~~~~~~~~~~--~~~if~iirel~~e~g~~~v~~s~~~~r----~~~kGf---s~~ql~~ 698 (721)
T KOG0482|consen 628 EDDVNEALRLMEMSKDSLYQDDGQKEDTSA--TDAIFAIIRELAGEGGKRCVKLSNAEQR----CVRKGF---SEAQLKK 698 (721)
T ss_pred hhhHHHHHHHHHhhhcccccccccccccch--HHHHHHHHHHHHhhcCCceeeHHHHHHH----HHHcCC---CHHHHHH
Confidence 9999999976643311 01 1111222 2234455555544 66666778777664 444443 3445666
Q ss_pred HHHHhcccceEEe
Q 003175 793 VGCKLGECRIILC 805 (842)
Q Consensus 793 ~~~~L~~~~li~~ 805 (842)
.++.-.++++-..
T Consensus 699 ~i~ey~~lnVw~~ 711 (721)
T KOG0482|consen 699 CIDEYAELNVWQV 711 (721)
T ss_pred HHHHHHhcCeEEE
Confidence 6666666665443
No 283
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=3.5e-05 Score=78.16 Aligned_cols=172 Identities=11% Similarity=0.058 Sum_probs=113.8
Q ss_pred HHHHhhcCCcccCCeEEEEcCCC-ChHHHHHHHHHHHHHHH-hhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCC
Q 003175 475 FIKGATCDDQCLGRCLYIHGVPG-TGKTMSVLAVMRSLRSE-VESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRV 552 (842)
Q Consensus 475 ~l~~~i~~~~~~~~~ili~GppG-tGKT~l~~~v~~~l~~~-~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~ 552 (842)
.|...++++. .+++.||.|..+ +||..++..+++.+.+. ...+..|++.++.-.... .. .+...
T Consensus 4 ~L~~~iq~~k-LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~-~~------------~~~~I 69 (263)
T PRK06581 4 RLEFNLKHNK-LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSA-TS------------NAKNI 69 (263)
T ss_pred HHHHHHHcCc-chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccc-cc------------cCCcc
Confidence 3444555554 589999999998 99999998888877653 223344554443221100 00 01223
Q ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc
Q 003175 553 SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS 632 (842)
Q Consensus 553 ~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s 632 (842)
+.++.++........ ...+...|++||++|.|.....+.|+.+++.+ ....++|.+|.. ++.+++.++|
T Consensus 70 ~IdqIReL~~~l~~~-----p~~g~~KViII~~ae~mt~~AANALLKtLEEP---P~~t~fILit~~---~~~LLpTIrS 138 (263)
T PRK06581 70 SIEQIRKLQDFLSKT-----SAISGYKVAIIYSAELMNLNAANSCLKILEDA---PKNSYIFLITSR---AASIISTIRS 138 (263)
T ss_pred cHHHHHHHHHHHhhC-----cccCCcEEEEEechHHhCHHHHHHHHHhhcCC---CCCeEEEEEeCC---hhhCchhHhh
Confidence 444444433322211 22357789999999999998899999999854 556677666665 5889999999
Q ss_pred cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHH
Q 003175 633 RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKV 675 (842)
Q Consensus 633 R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~ 675 (842)
||. .+.|+.+......+.....+. +..+...++++.+..
T Consensus 139 RCq--~i~~~~p~~~~~~e~~~~~~~--p~~~~~~l~~i~~~~ 177 (263)
T PRK06581 139 RCF--KINVRSSILHAYNELYSQFIQ--PIADNKTLDFINRFT 177 (263)
T ss_pred ceE--EEeCCCCCHHHHHHHHHHhcc--cccccHHHHHHHHHh
Confidence 994 699999999888888777765 344555577776653
No 284
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.29 E-value=3e-06 Score=98.90 Aligned_cols=231 Identities=17% Similarity=0.131 Sum_probs=135.1
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCccc------CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCC
Q 003175 461 FLPCRNKEMEDITAFIKGATCDDQCL------GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLA 534 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~~~~~------~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~ 534 (842)
++.|.+...+.|.-.|-......... --++||.|-||||||.|++.+.+.+.. -||.++..-+
T Consensus 287 sIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr-----------~vytsgkgss 355 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR-----------GVYTSGKGSS 355 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc-----------eEEEcccccc
Confidence 45677776555555444433221111 148999999999999999999887653 5777765533
Q ss_pred ChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------
Q 003175 535 SPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK-------- 606 (842)
Q Consensus 535 s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~-------- 606 (842)
.. |.......... ..+..-++..+. -....|..|||+|.+.......|...|+..+.
T Consensus 356 ~~------------GLTAav~rd~~-tge~~LeaGALV--lAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~ 420 (682)
T COG1241 356 AA------------GLTAAVVRDKV-TGEWVLEAGALV--LADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGIT 420 (682)
T ss_pred cc------------CceeEEEEccC-CCeEEEeCCEEE--EecCCEEEEEeccCCChHHHHHHHHHHHhcEeeeccccee
Confidence 21 21110000000 000011111110 11347999999999998888999998875432
Q ss_pred --CCCcEEEEEEeCCCC--------Cc--cccchhhhccCCceeEEecCCCHHHH----HHHHHHHh-------------
Q 003175 607 --PNSKLIVIGIANTMD--------LP--EKLLPRISSRMGVQRLCFGPYNHQQL----QEIISSRL------------- 657 (842)
Q Consensus 607 --~~~~vivI~~tn~~d--------l~--~~l~~~l~sR~~~~~i~f~p~~~~e~----~~Il~~~l------------- 657 (842)
-+.+..|++++|..- +. -.|.+.|.|||+.-.+...-++.+.- ..||..+.
T Consensus 421 atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~ 500 (682)
T COG1241 421 ATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGV 500 (682)
T ss_pred eecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccc
Confidence 135667788888631 11 23567899999963344444444322 23333331
Q ss_pred -----------c---------CcccCcHHHHHHHHHHHHHHhc-------------CHHHHHHHHHHHHHHHHHHHhhhc
Q 003175 658 -----------K---------GIEAFEKQAIEFASRKVAAISG-------------DARRALEICRRAAEIADYRIKKQT 704 (842)
Q Consensus 658 -----------~---------~~~~~~~~~l~~ia~~~~~~~G-------------d~R~al~ll~~A~~~A~~~~~~~~ 704 (842)
+ -.+.+++++.+.+.+.+..... -+|+...++|.|-..|..+.
T Consensus 501 ~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rL---- 576 (682)
T COG1241 501 DEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRL---- 576 (682)
T ss_pred cccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhc----
Confidence 0 0145666777666665533322 26777778888877777663
Q ss_pred cCCCcCCcCCCcccHHHHHHHHHHHh
Q 003175 705 SNKNSASVGKSLVGMADVEAAIQEMF 730 (842)
Q Consensus 705 ~~~~~~~~~~~~It~~dv~~A~~~~~ 730 (842)
+..|+.+|+.+|+.-+.
T Consensus 577 ---------S~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 577 ---------SDVVEEEDVDEAIRLVD 593 (682)
T ss_pred ---------cCCCCHHHHHHHHHHHH
Confidence 67899999999987654
No 285
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.28 E-value=1.7e-06 Score=104.04 Aligned_cols=176 Identities=22% Similarity=0.268 Sum_probs=119.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcc
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDG 568 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~ 568 (842)
.++++|+||+|||+.+..++.+++ +.+++.|+....+...++..+.+....+.+.... ..+...
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g----------~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~------~~~~~~ 422 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELG----------FKVVEKNASDVRSKKELLNKLGNATSSHSIKGSK------KKKGNR 422 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcc----------cceeecCccccccccHHHhhhhccccccchhhhh------cccccc
Confidence 468999999999999999999998 7799999999998888888777766544332111 111111
Q ss_pred cCCCCCCCCcEEEEEecCcccccCChHH---HHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCC
Q 003175 569 KKIGKEDDRPCILLIDELDLLVTRNQSV---LYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYN 645 (842)
Q Consensus 569 ~~~~~~~~~~~IlilDEid~L~~~~~~~---L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~ 645 (842)
. ...+...|||+||+|-+....... |-.+.. ....=+|.+.|+.+++. .+..++-. ..|.|+.++
T Consensus 423 ~---~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~-----ks~~Piv~~cndr~~p~---sr~~~~~~-~~l~f~kP~ 490 (871)
T KOG1968|consen 423 Q---SLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCK-----KSSRPLVCTCNDRNLPK---SRALSRAC-SDLRFSKPS 490 (871)
T ss_pred c---ccccceeEEEEeccccccchhhhhHHHHHHHHH-----hccCCeEEEecCCCCcc---ccchhhhc-ceeeecCCc
Confidence 1 112345699999999998844333 444443 23344455778755442 12223322 358999999
Q ss_pred HHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 003175 646 HQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEI 695 (842)
Q Consensus 646 ~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~ 695 (842)
.+++..-|...+.... .++++.++.+... ..||+|..+..++.-...
T Consensus 491 ~~~i~~ri~si~~se~~ki~~~~l~~~s~~---~~~DiR~~i~~lq~~~~~ 538 (871)
T KOG1968|consen 491 SELIRSRIMSICKSEGIKISDDVLEEISKL---SGGDIRQIIMQLQFWSLS 538 (871)
T ss_pred HHHHHhhhhhhhcccceecCcHHHHHHHHh---cccCHHHHHHHHhhhhcc
Confidence 9999998888886543 5777777775554 489999998887765333
No 286
>PTZ00202 tuzin; Provisional
Probab=98.28 E-value=2.3e-05 Score=85.82 Aligned_cols=170 Identities=16% Similarity=0.161 Sum_probs=100.6
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHH
Q 003175 459 PKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPEN 538 (842)
Q Consensus 459 p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~ 538 (842)
+..+.||+.|+.+|...|...-. . .+..+.|+|++|+|||++++.++..+. ...+++|.. ++.+
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~-~--~privvLtG~~G~GKTTLlR~~~~~l~----------~~qL~vNpr---g~eE 324 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDT-A--HPRIVVFTGFRGCGKSSLCRSAVRKEG----------MPAVFVDVR---GTED 324 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCC-C--CceEEEEECCCCCCHHHHHHHHHhcCC----------ceEEEECCC---CHHH
Confidence 45699999999999999875222 2 246788999999999999999987665 235556654 5688
Q ss_pred HHHHHHHHHhCCCCC-HHHHHHHHHHHhhcccCCCCCCCCcEEEE--EecCcccccCChHHHHHhhcCCCCCCCcEEEEE
Q 003175 539 IYRVIYEALSGHRVS-WKKALHSLNERFLDGKKIGKEDDRPCILL--IDELDLLVTRNQSVLYNILDWPTKPNSKLIVIG 615 (842)
Q Consensus 539 ~~~~i~~~l~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~~~~Ili--lDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~ 615 (842)
++..|...|.-.... -.+....|.+.+..... ..++..||| |-|-+.|..--.+.+.-..| ..-.++++=
T Consensus 325 lLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~---e~GrtPVLII~lreg~~l~rvyne~v~la~d---rr~ch~v~e- 397 (550)
T PTZ00202 325 TLRSVVKALGVPNVEACGDLLDFISEACRRAKK---MNGETPLLVLKLREGSSLQRVYNEVVALACD---RRLCHVVIE- 397 (550)
T ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHH---hCCCCEEEEEEecCCCcHHHHHHHHHHHHcc---chhheeeee-
Confidence 899999888422222 23455666665554432 112333443 44555553211121111111 112233321
Q ss_pred EeCCCCCccccc--hhhhccCCceeEEecCCCHHHHHHHHHHHhc
Q 003175 616 IANTMDLPEKLL--PRISSRMGVQRLCFGPYNHQQLQEIISSRLK 658 (842)
Q Consensus 616 ~tn~~dl~~~l~--~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~ 658 (842)
+ . .+.|- ....-|++. ..+|+.+.+|-.+..++.+.
T Consensus 398 v--p---leslt~~~~~lprldf--~~vp~fsr~qaf~y~~h~~d 435 (550)
T PTZ00202 398 V--P---LESLTIANTLLPRLDF--YLVPNFSRSQAFAYTQHAID 435 (550)
T ss_pred e--h---HhhcchhcccCcccee--EecCCCCHHHHHHHHhhccc
Confidence 1 1 11111 122335554 77899999999999988875
No 287
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.26 E-value=0.00023 Score=78.35 Aligned_cols=206 Identities=13% Similarity=0.282 Sum_probs=119.1
Q ss_pred cHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHH-HHHHHHHHHHhhcCCCCCceEEEEecccCCC---hHHHH
Q 003175 465 RNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSV-LAVMRSLRSEVESGSIRPYCFVEVNGLKLAS---PENIY 540 (842)
Q Consensus 465 Re~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~-~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s---~~~~~ 540 (842)
|.+.+++|..+|... +..-|+|.||.|+||+.|+ ..+++.- -.+++|+|..+.. +..+.
T Consensus 1 R~e~~~~L~~wL~e~------~~TFIvV~GPrGSGK~elV~d~~L~~r-----------~~vL~IDC~~i~~ar~D~~~I 63 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN------PNTFIVVQGPRGSGKRELVMDHVLKDR-----------KNVLVIDCDQIVKARGDAAFI 63 (431)
T ss_pred CchHHHHHHHHHhcC------CCeEEEEECCCCCCccHHHHHHHHhCC-----------CCEEEEEChHhhhccChHHHH
Confidence 456677777777662 2567889999999999999 5554432 2389999987654 34444
Q ss_pred HHHHHHH-----------------------hCCCCCHHH--------HHHHHHHHhhc----ccC-------------CC
Q 003175 541 RVIYEAL-----------------------SGHRVSWKK--------ALHSLNERFLD----GKK-------------IG 572 (842)
Q Consensus 541 ~~i~~~l-----------------------~g~~~~~~~--------~~~~L~~~f~~----~~~-------------~~ 572 (842)
..+..++ .|.+.++.. .+......+.. ..+ +.
T Consensus 64 ~~lA~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~ 143 (431)
T PF10443_consen 64 KNLASQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLE 143 (431)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhh
Confidence 4444433 233332211 11111111111 000 00
Q ss_pred CCCCCcEEEEEecCcccccCChHHHHHhh-cCC----CCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHH
Q 003175 573 KEDDRPCILLIDELDLLVTRNQSVLYNIL-DWP----TKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQ 647 (842)
Q Consensus 573 ~~~~~~~IlilDEid~L~~~~~~~L~~ll-~~~----~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~ 647 (842)
.......|||||.+..-... .+.+|..+ +|. +..-.+||| .|++......|...+.+|-- +.|.+.-.+.+
T Consensus 144 ~hPe~~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIF--lT~dv~~~k~LskaLPn~vf-~tI~L~Das~~ 219 (431)
T PF10443_consen 144 AHPERRPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIF--LTDDVSYSKPLSKALPNRVF-KTISLSDASPE 219 (431)
T ss_pred hCCccCCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEE--ECCCCchhhhHHHhCCCCce-eEEeecCCCHH
Confidence 01122468899999776544 56666544 675 223344555 56665556666667766643 67999999999
Q ss_pred HHHHHHHHHhcCcccC------------------cHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 003175 648 QLQEIISSRLKGIEAF------------------EKQAIEFASRKVAAISGDARRALEICRR 691 (842)
Q Consensus 648 e~~~Il~~~l~~~~~~------------------~~~~l~~ia~~~~~~~Gd~R~al~ll~~ 691 (842)
.-.+.+..+|...... .......+...+....|-+...-.++++
T Consensus 220 ~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrR 281 (431)
T PF10443_consen 220 SAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRR 281 (431)
T ss_pred HHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHH
Confidence 9999999999753110 0123344444556668877765444443
No 288
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.26 E-value=5.9e-06 Score=89.31 Aligned_cols=122 Identities=18% Similarity=0.208 Sum_probs=69.1
Q ss_pred cHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHH
Q 003175 465 RNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIY 544 (842)
Q Consensus 465 Re~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~ 544 (842)
|...+..+..++.....+. .+.++||+|++|||||+|+.++++++.... ..+.++... .++..+.
T Consensus 136 ~~~~~~~~~~fi~~~~~~~--~~~gl~L~G~~G~GKThLa~Aia~~l~~~g-------~~v~~~~~~------~l~~~lk 200 (306)
T PRK08939 136 RLDALMAALDFLEAYPPGE--KVKGLYLYGDFGVGKSYLLAAIANELAKKG-------VSSTLLHFP------EFIRELK 200 (306)
T ss_pred HHHHHHHHHHHHHHhhccC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcC-------CCEEEEEHH------HHHHHHH
Confidence 3344444555565544322 267899999999999999999999998431 345555543 2344444
Q ss_pred HHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC--Ch-HHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 545 EALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR--NQ-SVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 545 ~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~--~~-~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
..+... +.. +.+. .+ ...-||||||+...... .. ++|..+++..... +...|.+||-
T Consensus 201 ~~~~~~--~~~---~~l~-~l----------~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~--~~~ti~TSNl 260 (306)
T PRK08939 201 NSISDG--SVK---EKID-AV----------KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQE--ELPTFFTSNF 260 (306)
T ss_pred HHHhcC--cHH---HHHH-Hh----------cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHC--CCeEEEECCC
Confidence 433211 111 1222 22 24579999999865432 22 4566676643212 2333447774
No 289
>PRK06526 transposase; Provisional
Probab=98.22 E-value=3.5e-06 Score=88.61 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=60.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
+.+++|+||||||||+|+.+++.++.... ..++++++ ..+...+....... .....+..+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-------~~v~f~t~------~~l~~~l~~~~~~~-----~~~~~l~~l-- 157 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-------HRVLFATA------AQWVARLAAAHHAG-----RLQAELVKL-- 157 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-------CchhhhhH------HHHHHHHHHHHhcC-----cHHHHHHHh--
Confidence 57799999999999999999999886431 33444333 22333333221110 111122211
Q ss_pred cccCCCCCCCCcEEEEEecCcccccC--ChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTR--NQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~--~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
..+.+|||||++.+... .++.|+++++.... .. .+|.+||.
T Consensus 158 ---------~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~-~~--s~IitSn~ 200 (254)
T PRK06526 158 ---------GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYE-RA--SLIVTSNK 200 (254)
T ss_pred ---------ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHh-cC--CEEEEcCC
Confidence 14579999999988643 35689999874332 22 24557776
No 290
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.19 E-value=1.4e-05 Score=91.07 Aligned_cols=207 Identities=18% Similarity=0.214 Sum_probs=134.2
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHH
Q 003175 463 PCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRV 542 (842)
Q Consensus 463 ~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~ 542 (842)
++-+.+++.+...++...... -.+++.|.+||||-.+++++-+.-. . . -+||.|||..+.. ..
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~----~pvll~GEtGtGKe~laraiH~~s~-~--~-----gpfvAvNCaAip~-----~l 378 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATD----LPVLLQGETGTGKEVLARAIHQNSE-A--A-----GPFVAVNCAAIPE-----AL 378 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcC----CCeEecCCcchhHHHHHHHHHhccc-c--c-----CCeEEEEeccchH-----Hh
Confidence 356677777777777766543 5699999999999999999877654 2 1 3599999998775 34
Q ss_pred HHHHHhCCCCC-HHHHH-HHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC-------CCCCcEEE
Q 003175 543 IYEALSGHRVS-WKKAL-HSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT-------KPNSKLIV 613 (842)
Q Consensus 543 i~~~l~g~~~~-~~~~~-~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~-------~~~~~viv 613 (842)
|.+.++|...+ +..+. +.....+.. .....||||||..|.-.-|..|+.++.... .....|-|
T Consensus 379 iesELFGy~~GafTga~~kG~~g~~~~--------A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirv 450 (606)
T COG3284 379 IESELFGYVAGAFTGARRKGYKGKLEQ--------ADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRV 450 (606)
T ss_pred hhHHHhccCccccccchhcccccccee--------cCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEE
Confidence 55555553221 11110 001111111 234689999999998888999999986431 13445788
Q ss_pred EEEeCCCCCc-----cccchhhhccCCceeEEecCCCH-----HHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHH
Q 003175 614 IGIANTMDLP-----EKLLPRISSRMGVQRLCFGPYNH-----QQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDAR 683 (842)
Q Consensus 614 I~~tn~~dl~-----~~l~~~l~sR~~~~~i~f~p~~~-----~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R 683 (842)
|++|+. |+. -++-..+--|+...+|.+||+.. .-+..|+......-..+++++++-+.. ....||+|
T Consensus 451 i~ath~-dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~--~~WPGNir 527 (606)
T COG3284 451 IAATHR-DLAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLA--YRWPGNIR 527 (606)
T ss_pred EeccCc-CHHHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHh--CCCCCcHH
Confidence 888875 222 23334555577767889999844 334444444443223677777765432 34689999
Q ss_pred HHHHHHHHHHHHHH
Q 003175 684 RALEICRRAAEIAD 697 (842)
Q Consensus 684 ~al~ll~~A~~~A~ 697 (842)
+..++++.++.+++
T Consensus 528 el~~v~~~~~~l~~ 541 (606)
T COG3284 528 ELDNVIERLAALSD 541 (606)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999998775
No 291
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.16 E-value=5.7e-05 Score=77.42 Aligned_cols=124 Identities=17% Similarity=0.263 Sum_probs=80.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
.-+.-|+..+++..+.|+...... ...+|+.||.|.||+.|++.|...-.....- .-.||++||..+.... .
T Consensus 184 sgiatrnp~fnrmieqierva~rs---r~p~ll~gptgagksflarriyelk~arhq~----sg~fvevncatlrgd~-a 255 (531)
T COG4650 184 SGIATRNPHFNRMIEQIERVAIRS---RAPILLNGPTGAGKSFLARRIYELKQARHQF----SGAFVEVNCATLRGDT-A 255 (531)
T ss_pred hcccccChHHHHHHHHHHHHHhhc---cCCeEeecCCCcchhHHHHHHHHHHHHHHhc----CCceEEEeeeeecCch-H
Confidence 446677777777777776654433 3568999999999999999887643322211 1359999999988753 2
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhc
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILD 602 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~ 602 (842)
.+.+.....|...+......-| +.. ....+||||||..|....|..|++.++
T Consensus 256 msalfghvkgaftga~~~r~gl---lrs--------adggmlfldeigelgadeqamllkaie 307 (531)
T COG4650 256 MSALFGHVKGAFTGARESREGL---LRS--------ADGGMLFLDEIGELGADEQAMLLKAIE 307 (531)
T ss_pred HHHHHhhhccccccchhhhhhh---hcc--------CCCceEehHhhhhcCccHHHHHHHHHH
Confidence 3333333333333333332222 211 134799999999999988988888876
No 292
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.15 E-value=1e-05 Score=85.15 Aligned_cols=119 Identities=18% Similarity=0.303 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHH
Q 003175 465 RNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIY 544 (842)
Q Consensus 465 Re~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~ 544 (842)
+.+.+..+.++....- . +.+++|+|+||||||+|+-++++++... .+.+.+++... +++.|.
T Consensus 88 ~~~~l~~~~~~~~~~~---~--~~nl~l~G~~G~GKThLa~Ai~~~l~~~-------g~sv~f~~~~e------l~~~Lk 149 (254)
T COG1484 88 DKKALEDLASLVEFFE---R--GENLVLLGPPGVGKTHLAIAIGNELLKA-------GISVLFITAPD------LLSKLK 149 (254)
T ss_pred hHHHHHHHHHHHHHhc---c--CCcEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEEHHH------HHHHHH
Confidence 4445555555554433 2 6889999999999999999999999832 15577766443 344444
Q ss_pred HHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC--ChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 545 EALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR--NQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 545 ~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~--~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
..... ......|...+ ...-||||||+-..... ..+.+++++..... .... |.++|.
T Consensus 150 ~~~~~-----~~~~~~l~~~l----------~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~-~~~~--~~tsN~ 208 (254)
T COG1484 150 AAFDE-----GRLEEKLLREL----------KKVDLLIIDDIGYEPFSQEEADLLFQLISRRYE-SRSL--IITSNL 208 (254)
T ss_pred HHHhc-----CchHHHHHHHh----------hcCCEEEEecccCccCCHHHHHHHHHHHHHHHh-hccc--eeecCC
Confidence 44322 01122233322 24579999999987654 35667776653322 2222 557775
No 293
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.12 E-value=4.6e-06 Score=82.98 Aligned_cols=101 Identities=23% Similarity=0.329 Sum_probs=57.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
+.+++|+|++|||||+|+.++++++.... ..+.+++... ++..|.... . ..... +.+. .+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g-------~~v~f~~~~~------L~~~l~~~~-~-~~~~~---~~~~-~l~ 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKG-------YSVLFITASD------LLDELKQSR-S-DGSYE---ELLK-RLK 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT---------EEEEEHHH------HHHHHHCCH-C-CTTHC---HHHH-HHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCC-------cceeEeecCc------eeccccccc-c-ccchh---hhcC-ccc
Confidence 57899999999999999999999987631 5577776432 333332211 1 11111 2222 222
Q ss_pred cccCCCCCCCCcEEEEEecCcccccC--ChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTR--NQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~--~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
+.-+|||||+...... ..+.|+++++.-.. +. ..|.+||-
T Consensus 108 ----------~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~-~~--~tIiTSN~ 149 (178)
T PF01695_consen 108 ----------RVDLLILDDLGYEPLSEWEAELLFEIIDERYE-RK--PTIITSNL 149 (178)
T ss_dssp ----------TSSCEEEETCTSS---HHHHHCTHHHHHHHHH-T---EEEEEESS
T ss_pred ----------cccEecccccceeeecccccccchhhhhHhhc-cc--CeEeeCCC
Confidence 3469999999865432 24668888874432 22 23348875
No 294
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.11 E-value=1.7e-05 Score=89.37 Aligned_cols=174 Identities=20% Similarity=0.132 Sum_probs=101.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhcCCc----c--cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 459 PKFLPCRNKEMEDITAFIKGATCDDQ----C--LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 459 p~~L~gRe~e~~~l~~~l~~~i~~~~----~--~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
-+.+.|.+....-|.-.|-.-..... + .--+++|+|-|||||+-++++++..+.+ -||+.|..
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR-----------~vYtsGka 412 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR-----------SVYTSGKA 412 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc-----------ceEecCcc
Confidence 34567777766666555443222211 0 1248999999999999999999887753 57777665
Q ss_pred CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCC-----
Q 003175 533 LASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKP----- 607 (842)
Q Consensus 533 ~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~----- 607 (842)
-+.. |.....-.....-+-.+..+.-+. ....|-.|||+|.+..+.|.+|...|+...-.
T Consensus 413 SSaA------------GLTaaVvkD~esgdf~iEAGALmL---ADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAG 477 (764)
T KOG0480|consen 413 SSAA------------GLTAAVVKDEESGDFTIEAGALML---ADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAG 477 (764)
T ss_pred cccc------------cceEEEEecCCCCceeeecCcEEE---ccCceEEechhcccChHhHHHHHHHHHhheehheecc
Confidence 3322 221100000000000011110011 13468899999999998899999999854322
Q ss_pred -----CCcEEEEEEeCCCC--------Cc--cccchhhhccCCceeEEecCCCHHHHHHHHHHHhc
Q 003175 608 -----NSKLIVIGIANTMD--------LP--EKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLK 658 (842)
Q Consensus 608 -----~~~vivI~~tn~~d--------l~--~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~ 658 (842)
+.+-.||+++|... +. -+|.+.+.|||+...|.+.-.+...=..|-.+.+.
T Consensus 478 v~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld 543 (764)
T KOG0480|consen 478 VVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILD 543 (764)
T ss_pred eEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHH
Confidence 34456677777642 11 24567899999975666666666555555554443
No 295
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.09 E-value=1.6e-05 Score=83.49 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=82.2
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcC---c----ccCcHHHHHHHHHHHHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKG---I----EAFEKQAIEFASRKVAAI 678 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~---~----~~~~~~~l~~ia~~~~~~ 678 (842)
...+.|+|||+|.. +..-.+.+.|+||+. .+.|.+++.+++..||+..+.. . -.++++++++|++. .
T Consensus 4 vE~G~i~LIGATTE-NP~f~vn~ALlSR~~--v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~---a 77 (300)
T PRK14700 4 VESGKIILIGATTE-NPTYYLNDALVSRLF--ILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNY---N 77 (300)
T ss_pred ccCCcEEEEeecCC-CccceecHhhhhhhh--eeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHh---c
Confidence 45788999998853 445678899999995 5999999999999999998863 1 15889999998776 4
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHH
Q 003175 679 SGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEM 729 (842)
Q Consensus 679 ~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~ 729 (842)
.||+|.||++|..|+..+... +...||.++++++++..
T Consensus 78 ~GDaR~aLN~LE~a~~~~~~~-------------~~~~it~~~~~~~~~~~ 115 (300)
T PRK14700 78 EGDCRKILNLLERMFLISTRG-------------DEIYLNKELFDQAVGET 115 (300)
T ss_pred CCHHHHHHHHHHHHHhhcccc-------------CCCccCHHHHHHHHhHH
Confidence 899999999999987533110 11249999999988654
No 296
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.07 E-value=0.00011 Score=94.06 Aligned_cols=198 Identities=16% Similarity=0.178 Sum_probs=104.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCCh
Q 003175 457 TLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASP 536 (842)
Q Consensus 457 ~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~ 536 (842)
..++.++|++.++++|...+... .. ..+.+-|+|++|+||||||+++++.+..... ..++++...+...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~--~~--~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~-------g~vfv~~~~v~~~ 249 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE--SE--EVRMVGIWGSSGIGKTTIARALFSRLSRQFQ-------SSVFIDRAFISKS 249 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc--cC--ceEEEEEEcCCCCchHHHHHHHHHHHhhcCC-------eEEEeeccccccc
Confidence 34577999999999999888532 22 2578889999999999999999998764321 1233332110000
Q ss_pred ---------------HHHHHHHHHHHhC-CCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHh
Q 003175 537 ---------------ENIYRVIYEALSG-HRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNI 600 (842)
Q Consensus 537 ---------------~~~~~~i~~~l~g-~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~l 600 (842)
..+...+...+.+ ...... ....+.+.+. +++.+||||+++... ..+.|...
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~-~~~~~~~~L~---------~krvLLVLDdv~~~~--~l~~L~~~ 317 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIY-HLGAMEERLK---------HRKVLIFIDDLDDQD--VLDALAGQ 317 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccC-CHHHHHHHHh---------CCeEEEEEeCCCCHH--HHHHHHhh
Confidence 0011111111111 111000 0122233321 366899999997542 12444444
Q ss_pred hcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhc
Q 003175 601 LDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISG 680 (842)
Q Consensus 601 l~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~G 680 (842)
.+|.. .+++|+| ||.+.. +... .... +.+.++.++.++-.+++..++-......++ +..+++.+....|
T Consensus 318 ~~~~~-~GsrIIi--TTrd~~----vl~~--~~~~-~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~-~~~l~~~iv~~c~ 386 (1153)
T PLN03210 318 TQWFG-SGSRIIV--ITKDKH----FLRA--HGID-HIYEVCLPSNELALEMFCRSAFKKNSPPDG-FMELASEVALRAG 386 (1153)
T ss_pred CccCC-CCcEEEE--EeCcHH----HHHh--cCCC-eEEEecCCCHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHhC
Confidence 55542 3445444 555421 1111 1122 568889999999999999887543222333 3333443333333
Q ss_pred CHHHHHHH
Q 003175 681 DARRALEI 688 (842)
Q Consensus 681 d~R~al~l 688 (842)
.+--|+.+
T Consensus 387 GLPLAl~v 394 (1153)
T PLN03210 387 NLPLGLNV 394 (1153)
T ss_pred CCcHHHHH
Confidence 33334433
No 297
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.07 E-value=2e-05 Score=89.40 Aligned_cols=136 Identities=22% Similarity=0.245 Sum_probs=84.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCC--H-HHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVS--W-KKALHSLNER 564 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~--~-~~~~~~L~~~ 564 (842)
-+|||+|-||||||.+++.+.+-+.+ -+|.+|..-... |.... . .+..+.+
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pR-----------g~yTSGkGsSav------------GLTayVtrd~dtkqlV--- 516 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPR-----------GVYTSGKGSSAV------------GLTAYVTKDPDTRQLV--- 516 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCc-----------ceeecCCccchh------------cceeeEEecCccceee---
Confidence 58999999999999999999887753 366665542110 11110 0 0000110
Q ss_pred hhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC----------CCCCcEEEEEEeCCCC--------Cccc-
Q 003175 565 FLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT----------KPNSKLIVIGIANTMD--------LPEK- 625 (842)
Q Consensus 565 f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~----------~~~~~vivI~~tn~~d--------l~~~- 625 (842)
+..+ .+. -....|-.|||+|+|....+++|.+.|+..+ .-+.+-.||+++|..+ +.++
T Consensus 517 LesG-ALV--LSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI 593 (804)
T KOG0478|consen 517 LESG-ALV--LSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENI 593 (804)
T ss_pred eecC-cEE--EcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhcc
Confidence 0000 000 0234688999999998888999999997542 2256778899999532 2233
Q ss_pred -cchhhhccCCceeEEecCCCHHHHHHH
Q 003175 626 -LLPRISSRMGVQRLCFGPYNHQQLQEI 652 (842)
Q Consensus 626 -l~~~l~sR~~~~~i~f~p~~~~e~~~I 652 (842)
|.+.|.|||+.-.+.|.+.+...=+.+
T Consensus 594 ~LpptLLSRFDLIylllD~~DE~~Dr~L 621 (804)
T KOG0478|consen 594 NLPPTLLSRFDLIFLLLDKPDERSDRRL 621 (804)
T ss_pred CCChhhhhhhcEEEEEecCcchhHHHHH
Confidence 457999999976666777776533333
No 298
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.02 E-value=1.8e-06 Score=100.26 Aligned_cols=55 Identities=45% Similarity=0.961 Sum_probs=48.8
Q ss_pred CccccccccceeecccccccccCccCCCccccccCCCCCCCCCCCCccccccccccc
Q 003175 183 EEDPEVEECRICFRAGRSVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARKL 239 (842)
Q Consensus 183 ~~~~~~~~C~~C~~~~~~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 239 (842)
..+.+...|.+|+++|. +|+||.|+.+||.+|+++|+...|.++|.|+.|.+...
T Consensus 42 ~~~~~~e~c~ic~~~g~--~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 42 WDDAEQEACRICADGGE--LLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKN 96 (696)
T ss_pred cchhhhhhhhhhcCCCc--EEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence 44566779999999988 99999999999999999999999999999999965544
No 299
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.00 E-value=9.8e-05 Score=90.07 Aligned_cols=146 Identities=23% Similarity=0.280 Sum_probs=104.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCC--CCCHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGH--RVSWKKALHSLNER 564 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~--~~~~~~~~~~L~~~ 564 (842)
.-.+||-||..+|||+++..+++..+ -.||.||-..+++.. ..|....+.. ..++.+ ..|.+.
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tg----------hkfVRINNHEHTdlq---eYiGTyvTdd~G~lsFkE--GvLVeA 952 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETG----------HKFVRINNHEHTDLQ---EYIGTYVTDDDGSLSFKE--GVLVEA 952 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhC----------ccEEEecCcccchHH---HHhhceeecCCCceeeeh--hHHHHH
Confidence 45699999999999999999999987 459999999887642 3333222211 122322 233334
Q ss_pred hhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC-----------CCCCcEEEEEEeCCCCCc---cccchhh
Q 003175 565 FLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT-----------KPNSKLIVIGIANTMDLP---EKLLPRI 630 (842)
Q Consensus 565 f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~-----------~~~~~vivI~~tn~~dl~---~~l~~~l 630 (842)
++ +..-|||||+....+...++|..|++... .++..+.++++-|.+..- .-|..++
T Consensus 953 lR----------~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAF 1022 (4600)
T COG5271 953 LR----------RGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAF 1022 (4600)
T ss_pred Hh----------cCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHH
Confidence 32 45789999999887777888999987431 245667788877765332 3456688
Q ss_pred hccCCceeEEecCCCHHHHHHHHHHHhcC
Q 003175 631 SSRMGVQRLCFGPYNHQQLQEIISSRLKG 659 (842)
Q Consensus 631 ~sR~~~~~i~f~p~~~~e~~~Il~~~l~~ 659 (842)
+.|| .+++|.-...+++..||..|.+-
T Consensus 1023 RNRF--lE~hFddipedEle~ILh~rc~i 1049 (4600)
T COG5271 1023 RNRF--LEMHFDDIPEDELEEILHGRCEI 1049 (4600)
T ss_pred Hhhh--HhhhcccCcHHHHHHHHhccCcc
Confidence 8899 46999999999999999998763
No 300
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.98 E-value=4.8e-05 Score=77.07 Aligned_cols=123 Identities=20% Similarity=0.288 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHH
Q 003175 467 KEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEA 546 (842)
Q Consensus 467 ~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~ 546 (842)
+|.+.+..++.. + .+.++|.|+||||||++++.+...+.... ..++.+.... .....|.+.
T Consensus 5 ~Q~~a~~~~l~~----~---~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-------~~v~~~apT~-----~Aa~~L~~~ 65 (196)
T PF13604_consen 5 EQREAVRAILTS----G---DRVSVLQGPAGTGKTTLLKALAEALEAAG-------KRVIGLAPTN-----KAAKELREK 65 (196)
T ss_dssp HHHHHHHHHHHC----T---CSEEEEEESTTSTHHHHHHHHHHHHHHTT---------EEEEESSH-----HHHHHHHHH
T ss_pred HHHHHHHHHHhc----C---CeEEEEEECCCCCHHHHHHHHHHHHHhCC-------CeEEEECCcH-----HHHHHHHHh
Confidence 455555554432 2 46788999999999999999988887531 3355443221 222334333
Q ss_pred HhCCCCCHHHHHHHHHHHhhcccCC----CCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeC
Q 003175 547 LSGHRVSWKKALHSLNERFLDGKKI----GKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIAN 618 (842)
Q Consensus 547 l~g~~~~~~~~~~~L~~~f~~~~~~----~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn 618 (842)
. |... ..+...+...... ........+|||||+..+.. ..|..+++.....+.++++||=.+
T Consensus 66 ~-~~~a------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~---~~~~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 66 T-GIEA------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS---RQLARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp H-TS-E------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH---HHHHHHHHHS-T-T-EEEEEE-TT
T ss_pred h-Ccch------hhHHHHHhcCCcccccccccCCcccEEEEecccccCH---HHHHHHHHHHHhcCCEEEEECCcc
Confidence 2 2111 0122222211110 00023456999999999864 456666665545577888888544
No 301
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=97.98 E-value=0.0013 Score=72.68 Aligned_cols=227 Identities=13% Similarity=0.162 Sum_probs=134.6
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
..+.++|+|+- ..++...++.+.........+.+.++.+++.... ...++ +.+... ..|
T Consensus 16 ~~~~~li~G~d----~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~-~~~l~----~~~~t~------------~lF 74 (340)
T PRK05574 16 LAPLYLLYGDE----PLLLQEAKDAIRAAARAQGFDERNVFTFDGSETD-WDDVL----EACQSL------------PLF 74 (340)
T ss_pred CCceEEEEcCc----HHHHHHHHHHHHHHHHcCCCceeeEEEeecCCCC-HHHHH----HHhhcc------------Ccc
Confidence 46889999987 3555555555554332333345677888776532 22222 211110 012
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCC-hHHHHHhhcCCC-CCCCcEEEEEEeCCCCCcccc---chhhhccCCceeEE
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRN-QSVLYNILDWPT-KPNSKLIVIGIANTMDLPEKL---LPRISSRMGVQRLC 640 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~-~~~L~~ll~~~~-~~~~~vivI~~tn~~dl~~~l---~~~l~sR~~~~~i~ 640 (842)
+...||+|++++.+.... ...|..+.+... .+...+++|..++..+-...+ ...+.++. ..+.
T Consensus 75 ----------~~~klvii~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~--~~~~ 142 (340)
T PRK05574 75 ----------SDRKLVELRLPEFLTGAKGEKALKRLEAYLNPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKA--VVVE 142 (340)
T ss_pred ----------ccCeEEEEECCCCCCchhHHHHHHHHHHhccCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCc--eEEE
Confidence 244688999999886652 345555655431 122346666565554333233 34454554 4688
Q ss_pred ecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccH
Q 003175 641 FGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGM 719 (842)
Q Consensus 641 f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~ 719 (842)
|++++..++..++...+...+ .++++++++++..+ .||+..+.+-+.....++. +.. ||.
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~---~~d~~~l~~El~KL~l~~~---------------~~~-It~ 203 (340)
T PRK05574 143 AQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERV---EGNLLALAQELEKLALLYP---------------DGK-ITL 203 (340)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh---CchHHHHHHHHHHHHhhcC---------------CCC-CCH
Confidence 999999999999999998776 78999999977764 6788877666666655432 123 999
Q ss_pred HHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHHHHHcCCcce
Q 003175 720 ADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYELYKTGMGET 764 (842)
Q Consensus 720 ~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~~~~~g~~~~ 764 (842)
++|...+.........+.+..+......-...++..+...|.+..
T Consensus 204 ~~I~~~i~~~~~~~~f~l~dai~~~~~~~a~~~l~~l~~~~~~~~ 248 (340)
T PRK05574 204 EDVEEAVPDSARFDVFDLVDAILAGKIKRALRILDGLRLEGEEPI 248 (340)
T ss_pred HHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHH
Confidence 999988877665555555544333322212223333344454443
No 302
>PRK09183 transposase/IS protein; Provisional
Probab=97.97 E-value=8.3e-06 Score=86.28 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=60.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
+.+++|+||+|||||+|+.+++..+... + ..+.++++.. +...+....... .+...|.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~---G----~~v~~~~~~~------l~~~l~~a~~~~---------~~~~~~~ 159 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRA---G----IKVRFTTAAD------LLLQLSTAQRQG---------RYKTTLQ 159 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHc---C----CeEEEEeHHH------HHHHHHHHHHCC---------cHHHHHH
Confidence 5789999999999999999998876532 1 3466666432 222222211110 1112221
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCC--hHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRN--QSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~--~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
... ..+.+|||||++.+.... ++.|+++++.... ... +|.+||.
T Consensus 160 ~~~------~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~-~~s--~iiTsn~ 205 (259)
T PRK09183 160 RGV------MAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYE-KGS--MILTSNL 205 (259)
T ss_pred HHh------cCCCEEEEcccccCCCChHHHHHHHHHHHHHHh-cCc--EEEecCC
Confidence 110 145799999999865443 4579999875432 223 3447775
No 303
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.96 E-value=0.00079 Score=74.96 Aligned_cols=87 Identities=21% Similarity=0.308 Sum_probs=59.9
Q ss_pred HhccccCCCCC-----CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceE
Q 003175 451 ATLLLATLPKF-----LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCF 525 (842)
Q Consensus 451 ~~L~~~~~p~~-----L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~ 525 (842)
+.|.-..+|.. -+||+.+++.|..-|.....++ +..-+|.|.-|+|||++++.+......+ +|-+
T Consensus 11 ~aLr~GvVP~~Gl~~~~VGr~~e~~~l~~~l~~v~~G~---s~~kfi~G~YGsGKTf~l~~i~~~A~~~-------~fvv 80 (416)
T PF10923_consen 11 NALRAGVVPRIGLDHIAVGREREIEALDRDLDRVADGG---SSFKFIRGEYGSGKTFFLRLIRERALEK-------GFVV 80 (416)
T ss_pred HHHhCCCCCcccCcceeechHHHHHHHHHHHHHHhCCC---CeEEEEEeCCCCcHHHHHHHHHHHHHHc-------CCEE
Confidence 34554444433 6899999999999998755443 6778899999999999999888776643 2556
Q ss_pred EEEeccc---CC----ChHHHHHHHHHHH
Q 003175 526 VEVNGLK---LA----SPENIYRVIYEAL 547 (842)
Q Consensus 526 v~in~~~---~~----s~~~~~~~i~~~l 547 (842)
.+++.+. +. ....+|+.|.+.+
T Consensus 81 s~v~ls~e~~lh~~~g~~~~~Yr~l~~nL 109 (416)
T PF10923_consen 81 SEVDLSPERPLHGTGGQLEALYRELMRNL 109 (416)
T ss_pred EEEecCCCcccccccccHHHHHHHHHHhc
Confidence 6665554 12 2334666665554
No 304
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.96 E-value=7.7e-05 Score=91.52 Aligned_cols=215 Identities=15% Similarity=0.215 Sum_probs=124.3
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCCh---H-
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASP---E- 537 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~---~- 537 (842)
|.||+.|++.|...+..+..+. +..+++.|.+|.|||.++++|.+.+.+.. -.++.--|..+... .
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~---~~~~lv~G~sGIGKsalv~ev~~~i~~~~-------~~~i~~~f~q~~~~ipl~~ 71 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGR---GEVVLVAGESGIGKSALVNEVHKPITQQR-------GYFIKGKFDQFERNIPLSP 71 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCC---eEEEEEeecCCCcHHHHHHHHHHHHhccc-------eeeeHhhcccccCCCchHH
Confidence 7899999999999999988765 57899999999999999999999988651 12333333322221 1
Q ss_pred --HHHHHHHHHH-hCCC-----------------------------------C-----CHHHHHHHHHHHhhcccCCCCC
Q 003175 538 --NIYRVIYEAL-SGHR-----------------------------------V-----SWKKALHSLNERFLDGKKIGKE 574 (842)
Q Consensus 538 --~~~~~i~~~l-~g~~-----------------------------------~-----~~~~~~~~L~~~f~~~~~~~~~ 574 (842)
+.++.+..++ .+.. . +.........-.|.........
T Consensus 72 lvq~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~ 151 (849)
T COG3899 72 LVQAFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTA 151 (849)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHh
Confidence 1122222221 1000 0 0000000000000000000112
Q ss_pred CCCcEEEEEecCcccccCChHHHHHhhcCCC---CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHH
Q 003175 575 DDRPCILLIDELDLLVTRNQSVLYNILDWPT---KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQE 651 (842)
Q Consensus 575 ~~~~~IlilDEid~L~~~~~~~L~~ll~~~~---~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~ 651 (842)
..+|.|+|+|+++...+.+-+.|-.+++... .....|.. ..++ ...+..-.++.-....|.+.|++..+...
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~-~h~~----~~~~~~~~~~~~~i~~I~L~PL~~~d~~~ 226 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLL-LHPL----RPTLGEILKSATNITTITLAPLSRADTNQ 226 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhcccccc-CCCc----cchhhHHhhcCCceeEEecCcCchhhHHH
Confidence 3569999999999998888788877776432 00001111 1111 12222233344445789999999999999
Q ss_pred HHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003175 652 IISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICRRAAE 694 (842)
Q Consensus 652 Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~ 694 (842)
++...+..........++++.++ ..|++-.+.++++-...
T Consensus 227 lV~~~l~~~~~~~~p~~~~i~~k---t~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 227 LVAATLGCTKLLPAPLLELIFEK---TKGNPFFIEEFLKALYE 266 (849)
T ss_pred HHHHHhCCcccccchHHHHHHHH---hcCCCccHHHHHHHHHh
Confidence 99999986444444455555544 46777666666665544
No 305
>PHA00729 NTP-binding motif containing protein
Probab=97.92 E-value=5.1e-05 Score=77.37 Aligned_cols=123 Identities=15% Similarity=0.235 Sum_probs=67.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
-.+++|+|+||||||+++.++++.+.... ..+. .....+ ............+....|...+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l----------~~l~-----~~~~~~---d~~~~~~fid~~~Ll~~L~~a~~ 78 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVFWKL----------NNLS-----TKDDAW---QYVQNSYFFELPDALEKIQDAID 78 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHhhc----------cccc-----chhhHH---hcCCcEEEEEHHHHHHHHHHHHh
Confidence 35899999999999999999999876211 1110 000000 00000001122333344444332
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCH
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNH 646 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~ 646 (842)
.. .+..+|||||+..-..... |... .. ++ ...+.+.+.||+. .+.|.+++.
T Consensus 79 ~~-------~~~dlLIIDd~G~~~~~~~--------wh~~---~~---~~------yf~L~~aLrSR~~--l~il~~ls~ 129 (226)
T PHA00729 79 ND-------YRIPLIIFDDAGIWLSKYV--------WYED---YM---KT------FYKIYALIRTRVS--AVIFTTPSP 129 (226)
T ss_pred cC-------CCCCEEEEeCCchhhcccc--------hhhh---cc---ch------HHHHHHHHHhhCc--EEEEecCCH
Confidence 21 1235899999765432210 2211 01 11 2345667788885 488999999
Q ss_pred HHHHHHHHHH
Q 003175 647 QQLQEIISSR 656 (842)
Q Consensus 647 ~e~~~Il~~~ 656 (842)
+++.++|..|
T Consensus 130 edL~~~Lr~R 139 (226)
T PHA00729 130 EDLAFYLREK 139 (226)
T ss_pred HHHHHHHHhC
Confidence 9999988876
No 306
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.91 E-value=4.4e-06 Score=90.08 Aligned_cols=51 Identities=33% Similarity=0.908 Sum_probs=45.0
Q ss_pred ccccceeecccc-cccccCccCCCccccccCCCCCCCCCCC----Ccccccccccc
Q 003175 188 VEECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEG----EWVCEFCEARK 238 (842)
Q Consensus 188 ~~~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~----~W~C~~C~~~~ 238 (842)
...|.||....+ ..++.||.|..-||+.||+|||+.+|.. -|.|..|...+
T Consensus 544 ~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk~e 599 (707)
T KOG0957|consen 544 NYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDKNE 599 (707)
T ss_pred ceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccccccc
Confidence 356999998876 8999999999999999999999999986 59999995544
No 307
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.87 E-value=1.6e-05 Score=87.69 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=65.1
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHh---CCCCCHHHHHHHHH
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALS---GHRVSWKKALHSLN 562 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~---g~~~~~~~~~~~L~ 562 (842)
.++++||+|++|+|||+|+..+...+.... ...++ -+.+...+.+.+. |.........+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~----k~R~H-----------Fh~Fm~~vh~~l~~~~~~~~~l~~va~--- 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKR----KRRVH-----------FHEFMLDVHSRLHQLRGQDDPLPQVAD--- 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccc----ccccc-----------ccHHHHHHHHHHHHHhCCCccHHHHHH---
Confidence 589999999999999999999988876321 01111 1233344433332 22222222222
Q ss_pred HHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCC
Q 003175 563 ERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTM 620 (842)
Q Consensus 563 ~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~ 620 (842)
.+. +...||+|||++.-.-...-+|..||++.. ...++||+|||..
T Consensus 123 -~l~---------~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 123 -ELA---------KESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSNRP 168 (362)
T ss_pred -HHH---------hcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCCCC
Confidence 221 133599999998765555566777776543 4578999999984
No 308
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.87 E-value=6.3e-06 Score=99.55 Aligned_cols=84 Identities=26% Similarity=0.571 Sum_probs=60.9
Q ss_pred cccccccceeeccc-c--cccccCccCCCccccccCCCCCCCCCCCCcccccccccccCcc--ccCCCCCCCCccccccc
Q 003175 185 DPEVEECRICFRAG-R--SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARKLGKK--IELPKPPEGKKRVRTMR 259 (842)
Q Consensus 185 ~~~~~~C~~C~~~~-~--~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~~~--~~~~~~~~~~~~~~~~~ 259 (842)
.+++.+|.+|.++. + +.+|+||+|+.++|++|+| ..-+|+|.|.|..|.....+.. +.+|..-.++. ++..
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFk--qt~d 291 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFK--QTDD 291 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCcccceEeccCCCCcce--eccC
Confidence 35667899999875 2 7899999999999999999 6689999999999987654431 23444333333 2222
Q ss_pred ccccchhhhhhhhhceeec
Q 003175 260 EKLLSSDLWAANIQSMWKE 278 (842)
Q Consensus 260 ~~~~~~~~~~~~I~~i~~~ 278 (842)
.-|...++.||..
T Consensus 292 ------grw~Hv~caiwip 304 (1051)
T KOG0955|consen 292 ------GRWAHVVCAIWIP 304 (1051)
T ss_pred ------Cceeeeehhhccc
Confidence 3466677888875
No 309
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.84 E-value=3e-06 Score=106.58 Aligned_cols=56 Identities=41% Similarity=1.029 Sum_probs=50.0
Q ss_pred Cccccccccceeecccc-cccccCccCCCccccccCCCCCCCCCCCCcccccccccc
Q 003175 183 EEDPEVEECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARK 238 (842)
Q Consensus 183 ~~~~~~~~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 238 (842)
........|.+|...++ ..|+.||.|..+||++|+.|.+..+|.|+|+||.|+...
T Consensus 1103 ~~s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1103 DRSAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred ccccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 34445678999998876 689999999999999999999999999999999999875
No 310
>PRK10536 hypothetical protein; Provisional
Probab=97.82 E-value=0.0001 Score=76.44 Aligned_cols=141 Identities=17% Similarity=0.173 Sum_probs=75.7
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCCh----
Q 003175 461 FLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASP---- 536 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~---- 536 (842)
.+..|......+..+|.. ...+++.|++|||||+|+.+++.+.-.. + .+..++|.-..+...
T Consensus 56 ~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~---~---~~~kIiI~RP~v~~ge~LG 121 (262)
T PRK10536 56 PILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIH---K---DVDRIIVTRPVLQADEDLG 121 (262)
T ss_pred cccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhc---C---CeeEEEEeCCCCCchhhhC
Confidence 356677777777666643 3578999999999999999998853211 1 155566654443211
Q ss_pred ----------HHHHHHHHHHHhCCCCCHHHHHHHHHHHhh------cccC---CCCCCCCcEEEEEecCcccccCChHHH
Q 003175 537 ----------ENIYRVIYEALSGHRVSWKKALHSLNERFL------DGKK---IGKEDDRPCILLIDELDLLVTRNQSVL 597 (842)
Q Consensus 537 ----------~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~------~~~~---~~~~~~~~~IlilDEid~L~~~~~~~L 597 (842)
...+..|++.|... .+.. .+...+. +... +....=...+|||||++.+... .+
T Consensus 122 fLPG~~~eK~~p~~~pi~D~L~~~-~~~~----~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~---~~ 193 (262)
T PRK10536 122 FLPGDIAEKFAPYFRPVYDVLVRR-LGAS----FMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAA---QM 193 (262)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHH-hChH----HHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHH---HH
Confidence 00111222222110 0111 1111110 0000 1111123469999999999763 33
Q ss_pred HHhhcCCCCCCCcEEEEEEeCCCCCcc
Q 003175 598 YNILDWPTKPNSKLIVIGIANTMDLPE 624 (842)
Q Consensus 598 ~~ll~~~~~~~~~vivI~~tn~~dl~~ 624 (842)
..++--. -.+++++|+|=.+..|++.
T Consensus 194 k~~ltR~-g~~sk~v~~GD~~QiD~p~ 219 (262)
T PRK10536 194 KMFLTRL-GENVTVIVNGDITQCDLPR 219 (262)
T ss_pred HHHHhhc-CCCCEEEEeCChhhccCCC
Confidence 3333322 2588999998777777764
No 311
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.81 E-value=0.00035 Score=88.04 Aligned_cols=194 Identities=14% Similarity=0.202 Sum_probs=105.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCCh
Q 003175 457 TLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASP 536 (842)
Q Consensus 457 ~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~ 536 (842)
-.|..++.|..-++.+... . ..+.++|+||+|.|||+++..++.... .+..+.+.... .++
T Consensus 11 ~~~~~~~~R~rl~~~l~~~-------~--~~~~~~v~apaG~GKTtl~~~~~~~~~---------~~~w~~l~~~d-~~~ 71 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSGA-------N--NYRLVLVTSPAGYGKTTLISQWAAGKN---------NLGWYSLDESD-NQP 71 (903)
T ss_pred CCccccCcchHHHHHHhcc-------c--CCCeEEEECCCCCCHHHHHHHHHHhCC---------CeEEEecCccc-CCH
Confidence 3445567777655555321 1 257799999999999999998775321 13445554433 456
Q ss_pred HHHHHHHHHHHhCCCCC----H---------HHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-hHHHHHhhc
Q 003175 537 ENIYRVIYEALSGHRVS----W---------KKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-QSVLYNILD 602 (842)
Q Consensus 537 ~~~~~~i~~~l~g~~~~----~---------~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-~~~L~~ll~ 602 (842)
..++..|...+...... . ......+...+.... ....+++||||++|.+.... ...|..+++
T Consensus 72 ~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~ 147 (903)
T PRK04841 72 ERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELA----DWHQPLYLVIDDYHLITNPEIHEAMRFFLR 147 (903)
T ss_pred HHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHh----cCCCCEEEEEeCcCcCCChHHHHHHHHHHH
Confidence 66777777766311000 0 011112222222211 12478999999999986443 346667776
Q ss_pred CCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEec--CCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhc
Q 003175 603 WPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFG--PYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISG 680 (842)
Q Consensus 603 ~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~--p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~G 680 (842)
.. ...+.||.++... .+-.+ .++.-+-...+|... +++.+|..+.+..++.. .++++.++.+.+. ..|
T Consensus 148 ~~---~~~~~lv~~sR~~-~~~~~-~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~--~~~~~~~~~l~~~---t~G 217 (903)
T PRK04841 148 HQ---PENLTLVVLSRNL-PPLGI-ANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS--PIEAAESSRLCDD---VEG 217 (903)
T ss_pred hC---CCCeEEEEEeCCC-CCCch-HhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC--CCCHHHHHHHHHH---hCC
Confidence 43 2334444356541 11111 222211111234444 88999999999877642 3566565554444 466
Q ss_pred CHH
Q 003175 681 DAR 683 (842)
Q Consensus 681 d~R 683 (842)
.+.
T Consensus 218 wp~ 220 (903)
T PRK04841 218 WAT 220 (903)
T ss_pred hHH
Confidence 653
No 312
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00026 Score=82.63 Aligned_cols=176 Identities=23% Similarity=0.262 Sum_probs=109.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
+..+++++||||+|||.+++.++.. . ..+..+++....+. ........+...|
T Consensus 17 ~~~~v~~~g~~~~~~t~~~~~~a~~-~----------~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~ 69 (494)
T COG0464 17 PPKGVLLHGPPGTGKTLLARALANE-G----------AEFLSINGPEILSK----------------YVGESELRLRELF 69 (494)
T ss_pred CCCCceeeCCCCCchhHHHHHHHhc-c----------CcccccCcchhhhh----------------hhhHHHHHHHHHH
Confidence 4788999999999999999999988 2 11244554443321 1112333444455
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCCh-----------HHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccC
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRNQ-----------SVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRM 634 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~~-----------~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~ 634 (842)
..+.. ..+.++++||+|.+..... ..|+.+++... ... +++++.+|..+..+... +...||
T Consensus 70 ~~a~~-----~~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~-~~~~~~ 141 (494)
T COG0464 70 EEAEK-----LAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAK-RRPGRF 141 (494)
T ss_pred HHHHH-----hCCCeEeechhhhcccCccccccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhH-hCcccc
Confidence 44433 2458999999999987653 24566666555 444 88888888754433222 223567
Q ss_pred CceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 003175 635 GVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYR 699 (842)
Q Consensus 635 ~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~ 699 (842)
. ..+.+...+.....+|+.........-.+..+..++....+..|.- .-.+++.+...+..+
T Consensus 142 ~-~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~l~~~~~~~~~~r 203 (494)
T COG0464 142 D-REIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGAD--LGALAKEAALRELRR 203 (494)
T ss_pred c-eeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHH--HHHHHHHHHHHHHHh
Confidence 6 6788888888888888887776554443555556665554444422 223666666666554
No 313
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.79 E-value=1.6e-06 Score=95.04 Aligned_cols=146 Identities=22% Similarity=0.213 Sum_probs=75.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
.-++||+|.||||||.|++.+.+-. ...+++++...+...-......+...|... . ++...+ +
T Consensus 57 ~ihiLlvGdpg~gKS~ll~~~~~~~-----------pr~v~~~g~~~s~~gLta~~~~d~~~~~~~-l-eaGalv---l- 119 (331)
T PF00493_consen 57 NIHILLVGDPGTGKSQLLKYVAKLA-----------PRSVYTSGKGSSAAGLTASVSRDPVTGEWV-L-EAGALV---L- 119 (331)
T ss_dssp S--EEEECSCHHCHHHHHHCCCCT------------SSEEEEECCGSTCCCCCEEECCCGGTSSEC-E-EE-HHH---H-
T ss_pred ccceeeccchhhhHHHHHHHHHhhC-----------CceEEECCCCcccCCccceeccccccceeE-E-eCCchh---c-
Confidence 3489999999999999999775433 236787777644320000000000001000 0 000000 1
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC----------CCCcEEEEEEeCCCC--------Ccc--cc
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK----------PNSKLIVIGIANTMD--------LPE--KL 626 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~----------~~~~vivI~~tn~~d--------l~~--~l 626 (842)
....|++|||+|.+.......|+..|+.... -+.+..|++++|... +.+ .+
T Consensus 120 ---------ad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l 190 (331)
T PF00493_consen 120 ---------ADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINL 190 (331)
T ss_dssp ---------CTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S
T ss_pred ---------ccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhccc
Confidence 1347999999999988778899999985421 135678999999642 112 35
Q ss_pred chhhhccCCceeEEecCCCHHHHHHHHHHHhc
Q 003175 627 LPRISSRMGVQRLCFGPYNHQQLQEIISSRLK 658 (842)
Q Consensus 627 ~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~ 658 (842)
.+.+.|||+.-.+.+..++.+.-..|..+.+.
T Consensus 191 ~~~LLSRFDLif~l~D~~d~~~D~~la~~il~ 222 (331)
T PF00493_consen 191 PPPLLSRFDLIFLLRDKPDEEEDERLAEHILD 222 (331)
T ss_dssp -CCCHCC-SEEECC--TTT-HHHHHHHHHHHT
T ss_pred chhhHhhcCEEEEeccccccccccccceEEEe
Confidence 67899999963333567776555555554443
No 314
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.77 E-value=0.0023 Score=72.39 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=76.5
Q ss_pred HHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCc------ccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCC
Q 003175 447 ERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQ------CLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSI 520 (842)
Q Consensus 447 ~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~------~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~ 520 (842)
...++.+....+|..+..++..++.+.+.|...+.... ..+..++|+|++|+|||+++..++..+....
T Consensus 49 ~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g----- 123 (437)
T PRK00771 49 KSIKERALEEEPPKGLTPREHVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKG----- 123 (437)
T ss_pred HHHHHHHhcccccccCCcHHHHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHcC-----
Confidence 34444455556677777777778888888777664321 1257899999999999999999999887431
Q ss_pred CCceEEEEecccCCCh-HHHHHHHHHHHhCCCC----CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 521 RPYCFVEVNGLKLASP-ENIYRVIYEALSGHRV----SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 521 ~~~~~v~in~~~~~s~-~~~~~~i~~~l~g~~~----~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
..+..|.+..+... .+-+..+.+.+ +... ...+....+.+.+.... ..-+||||..-.+..
T Consensus 124 --~kV~lV~~D~~R~aa~eQL~~la~~~-gvp~~~~~~~~d~~~i~~~al~~~~-------~~DvVIIDTAGr~~~ 189 (437)
T PRK00771 124 --LKVGLVAADTYRPAAYDQLKQLAEKI-GVPFYGDPDNKDAVEIAKEGLEKFK-------KADVIIVDTAGRHAL 189 (437)
T ss_pred --CeEEEecCCCCCHHHHHHHHHHHHHc-CCcEEecCCccCHHHHHHHHHHHhh-------cCCEEEEECCCcccc
Confidence 34555665554331 12222333332 2211 01122333334333321 126899999987754
No 315
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=97.76 E-value=0.0032 Score=69.83 Aligned_cols=175 Identities=14% Similarity=0.122 Sum_probs=103.8
Q ss_pred CcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc-cCCceeEEecCCCHHHHHHHHHH
Q 003175 577 RPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS-RMGVQRLCFGPYNHQQLQEIISS 655 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s-R~~~~~i~f~p~~~~e~~~Il~~ 655 (842)
...+|+|.+.+. ...+.|..++..+ +...++|+ .+...+-...+-.-+.. ... ..+.|.+++..++..++..
T Consensus 81 ~~rlViv~~~~~---~~~~~L~~~l~~~--~~~~~lil-~~~~~~~~~kl~k~~~~~~~~-~~v~~~~~~~~~l~~~i~~ 153 (343)
T PRK06585 81 GRRLIWVRAGSK---NLAAALKALLESP--PGDAFIVI-EAGDLKKGSSLRKLFETAAYA-AAIPCYADDERDLARLIDD 153 (343)
T ss_pred CceEEEEECCch---hHHHHHHHHHcCC--CCCcEEEE-EcCCCCcccHHHHHHhcCCCe-eEEecCCCCHHHHHHHHHH
Confidence 346778885432 2245677777654 22333433 34444333333232211 111 4578888999999999999
Q ss_pred HhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChH
Q 003175 656 RLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPH 734 (842)
Q Consensus 656 ~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~ 734 (842)
+++..+ .+++++++++...+ .||++.+.+-+.+...++. +...||.+||.+.+........
T Consensus 154 ~~~~~g~~i~~~a~~~L~~~~---g~dl~~l~~EleKL~ly~~---------------~~~~It~edV~~lv~~~~e~~i 215 (343)
T PRK06585 154 ELAEAGLRITPDARALLVALL---GGDRLASRNEIEKLALYAH---------------GKGEITLDDVRAVVGDASALSL 215 (343)
T ss_pred HHHHCCCCCCHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcC---------------CCCCCCHHHHHHHhCCcccccH
Confidence 998877 89999999987765 7898877666666665432 2356999999988876655555
Q ss_pred HHHHhhCchHHHHHHHHHHHHHHHcCCccee-HHHHHHHHHHH
Q 003175 735 IQVMKSCSKLSKIFLTAMVYELYKTGMGETN-FEKLAMTVSSL 776 (842)
Q Consensus 735 ~~~l~~ls~~~kliL~a~~~~~~~~g~~~~~-~~~v~~~y~~~ 776 (842)
.+.+..+...+..-...++..+...|..++. +..+...++.+
T Consensus 216 f~l~dai~~~~~~~a~~~l~~ll~~g~~p~~il~~L~~~~r~L 258 (343)
T PRK06585 216 DDAADAALAGDLAAFERALDRALAEGTAPVLILRAALRHFQRL 258 (343)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5555544333322222333334455655544 34444444443
No 316
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.0002 Score=70.79 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=80.8
Q ss_pred EEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCc-----------eeEEecCCCHHHH
Q 003175 581 LLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGV-----------QRLCFGPYNHQQL 649 (842)
Q Consensus 581 lilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~-----------~~i~f~p~~~~e~ 649 (842)
++||++|.|....++.|+.+++. +..+++||.+|.. +..+++.++|||.. ..+.|.+++.+++
T Consensus 58 ~iI~~a~~l~~~A~NaLLK~LEE---Pp~~~~fiL~t~~---~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i 131 (206)
T PRK08485 58 IIVIAAPSYGIEAQNALLKILEE---PPKNICFIIVAKS---KNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDI 131 (206)
T ss_pred EEEEchHhhCHHHHHHHHHHhcC---CCCCeEEEEEeCC---hHhCchHHHhhheeccccccccccccccccCCCCHHHH
Confidence 45789999998889999999985 4667777777776 58899999999963 2477999999999
Q ss_pred HHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 003175 650 QEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEI 695 (842)
Q Consensus 650 ~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~ 695 (842)
.+.|.. ++..+ ..+++++++|++.. .|.+|.++.+..++...
T Consensus 132 ~~~L~~-~~ke~~~~~~ea~~lIa~la---~~s~r~~l~l~~q~l~~ 174 (206)
T PRK08485 132 YEFLKE-LEKENKLSKEELKELIESLL---KECVKYKIPLNEEELEY 174 (206)
T ss_pred HHHHHH-HHHcccccHHHHHHHHHHHH---HHHHHHHcCccHHHHHH
Confidence 999998 44433 56778888888774 56677776666555543
No 317
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=97.76 E-value=0.00081 Score=74.01 Aligned_cols=176 Identities=13% Similarity=0.134 Sum_probs=99.0
Q ss_pred CcEEEEEecCcccccCC---hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEec---CCCHHHHH
Q 003175 577 RPCILLIDELDLLVTRN---QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFG---PYNHQQLQ 650 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~---~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~---p~~~~e~~ 650 (842)
...+|+|++++.+.... .+.|...++.+. ...++|+.+++..|-...+...+.... ....|. +++.+++.
T Consensus 61 ~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~--~~~~li~~~~~~~d~r~k~~k~l~k~~--~~~~~~~~~~~~~~~l~ 136 (326)
T PRK07452 61 GGRLVWLKNSPLCQGCSEELLAELERTLPLIP--ENTHLLLTNTKKPDGRLKSTKLLQKLA--EEKEFSLIPPWDTEGLK 136 (326)
T ss_pred CceEEEEeCchhhccCCHHHHHHHHHHHcCCC--CCcEEEEEeCCCcchHHHHHHHHHHce--eEEEecCCCcccHHHHH
Confidence 45688889887664333 345666665432 223333333444332223333444433 245554 44678899
Q ss_pred HHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHH
Q 003175 651 EIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEM 729 (842)
Q Consensus 651 ~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~ 729 (842)
.++..++...+ .++++++++++..+ .||++.+.+-+.+.+.++.. +...||.++|...+...
T Consensus 137 ~~i~~~~~~~g~~i~~~a~~~L~~~~---g~dl~~l~~EleKL~ly~~~--------------~~~~It~~~V~~~v~~~ 199 (326)
T PRK07452 137 QLVERTAQELGVKLTPEAAELLAEAV---GNDSRRLYNELEKLALYAEN--------------STKPISAEEVKALVSNT 199 (326)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHh---CccHHHHHHHHHHHHHhccC--------------CCCccCHHHHHHHhccC
Confidence 99999998777 89999999977765 67998777767666654311 13569999999887754
Q ss_pred hhChHHHHHhhCchHHHHHHHHHHHHHHHcCCccee-HHHHHHHHH
Q 003175 730 FQAPHIQVMKSCSKLSKIFLTAMVYELYKTGMGETN-FEKLAMTVS 774 (842)
Q Consensus 730 ~~~~~~~~l~~ls~~~kliL~a~~~~~~~~g~~~~~-~~~v~~~y~ 774 (842)
.....+.+..+......-...++..+...|...+. +..+...++
T Consensus 200 -~~~if~l~dai~~~~~~~A~~~l~~L~~~g~~p~~il~~l~~~~r 244 (326)
T PRK07452 200 -TQNSLQLADALLQGNTGKALALLDDLLDANEPALRIVATLTGQFR 244 (326)
T ss_pred -cCcHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 33444444443332222122233334445554443 333333333
No 318
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.75 E-value=8e-06 Score=92.31 Aligned_cols=51 Identities=33% Similarity=0.721 Sum_probs=45.3
Q ss_pred ccccccceeecccc---cccccCccCCCccccccCCCCCCCCCCCCcccccccccc
Q 003175 186 PEVEECRICFRAGR---SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARK 238 (842)
Q Consensus 186 ~~~~~C~~C~~~~~---~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 238 (842)
+++..|.+|+.++. +.|++||.|+-..|+.|+| +.++|+|.|.|..|.-..
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg~ 322 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALGI 322 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhccccC
Confidence 46778999998753 6799999999999999999 999999999999997653
No 319
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.74 E-value=0.00069 Score=70.51 Aligned_cols=136 Identities=19% Similarity=0.170 Sum_probs=81.4
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcc-cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHH
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQC-LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIY 540 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~-~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~ 540 (842)
|.|..-..+.|...++..+.++.+ .+-.+-|+|.+||||...++.+++.+....... ++-..++--..+..+..+-
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S---~~V~~fvat~hFP~~~~ie 160 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS---PFVHHFVATLHFPHASKIE 160 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc---hhHHHhhhhccCCChHHHH
Confidence 668888888888889888887642 133444789999999999999999987542111 0101111111111111100
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC----CCCCcEEEEEE
Q 003175 541 RVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT----KPNSKLIVIGI 616 (842)
Q Consensus 541 ~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~----~~~~~vivI~~ 616 (842)
.- -.+....+......+ ...|+|+||+|.|...--++|.-+++... -...+-|+|..
T Consensus 161 -~Y----------k~eL~~~v~~~v~~C--------~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfL 221 (344)
T KOG2170|consen 161 -DY----------KEELKNRVRGTVQAC--------QRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFL 221 (344)
T ss_pred -HH----------HHHHHHHHHHHHHhc--------CCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEE
Confidence 00 011222233333222 55899999999998776778888887431 12346788888
Q ss_pred eCC
Q 003175 617 ANT 619 (842)
Q Consensus 617 tn~ 619 (842)
+|.
T Consensus 222 SN~ 224 (344)
T KOG2170|consen 222 SNA 224 (344)
T ss_pred cCC
Confidence 885
No 320
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=97.74 E-value=0.0014 Score=71.12 Aligned_cols=164 Identities=15% Similarity=0.134 Sum_probs=105.5
Q ss_pred CcEEEEEecCcccccC-ChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHH
Q 003175 577 RPCILLIDELDLLVTR-NQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEII 653 (842)
Q Consensus 577 ~~~IlilDEid~L~~~-~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il 653 (842)
...||+|++++.+... ..+.|..++..+ ....+||..++..+-...+...+.. ++ ..+.|.+++..++..++
T Consensus 46 ~~kliii~~~~~~~~~~~~~~L~~~l~~~---~~~~~~i~~~~~~~~~~~~~k~~~~~~~~--~~i~~~~~~~~~~~~~i 120 (302)
T TIGR01128 46 ERRLVELRNPEGKPGAKGLKALEEYLANP---PPDTLLLIEAPKLDKRKKLTKWLKALKNA--QIVECKTPKEQELPRWI 120 (302)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHhcC---CCCEEEEEecCCCCHhHHHHHHHHHhcCe--eEEEecCCCHHHHHHHH
Confidence 4478999999988643 246677777643 3345555555544332222222332 55 45899999999999999
Q ss_pred HHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhC
Q 003175 654 SSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 654 ~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
...+...+ .++++++++++..+ .||++.+.+.+.+...++. ...||.++|...+......
T Consensus 121 ~~~~~~~g~~i~~~a~~~l~~~~---~~d~~~l~~el~KL~~~~~----------------~~~It~e~I~~~~~~~~~~ 181 (302)
T TIGR01128 121 QARLKKLGLRIDPDAVQLLAELV---EGNLLAIAQELEKLALYAP----------------DGKITLEDVEEAVSDSARF 181 (302)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHh---CcHHHHHHHHHHHHHhhCC----------------CCCCCHHHHHHHHhhhhcC
Confidence 99998776 69999999987664 7899988888877666542 2359999999888766555
Q ss_pred hHHHHHhhCchHHHHHHHHHHHHHHHcCCcce
Q 003175 733 PHIQVMKSCSKLSKIFLTAMVYELYKTGMGET 764 (842)
Q Consensus 733 ~~~~~l~~ls~~~kliL~a~~~~~~~~g~~~~ 764 (842)
...+.+..+-.....-...++..+...|...+
T Consensus 182 ~if~l~dal~~~~~~~a~~~l~~l~~~~~~~~ 213 (302)
T TIGR01128 182 NVFDLTDALLEGKAARALRILKGLLGEGEEPL 213 (302)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHH
Confidence 45555554433322222333444445554443
No 321
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.0002 Score=79.53 Aligned_cols=106 Identities=12% Similarity=0.222 Sum_probs=59.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
+..++|+||+|+||||++..++..+...... ....+.++.+++.......+ ...+.+.+ |..+........+...+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~-~g~~V~lit~Dt~R~aa~eQ-L~~~a~~l-gvpv~~~~~~~~l~~~L~ 250 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDD-KSLNIKIITIDNYRIGAKKQ-IQTYGDIM-GIPVKAIESFKDLKEEIT 250 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhcc-CCCeEEEEeccCccHHHHHH-HHHHhhcC-CcceEeeCcHHHHHHHHH
Confidence 5689999999999999999999887643211 11225566666544333222 22222222 333222222233343333
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCCh--HHHHHhhc
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRNQ--SVLYNILD 602 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~~--~~L~~ll~ 602 (842)
.. ...-+||||++..+..... ..|..+++
T Consensus 251 ~~-------~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 251 QS-------KDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred Hh-------CCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 22 2457999999998864322 33455554
No 322
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.72 E-value=1.1e-05 Score=88.78 Aligned_cols=48 Identities=35% Similarity=0.976 Sum_probs=37.4
Q ss_pred cceee--cccc-cccccCccCCCccccccCCCCCCCC----CCCCcccccccccc
Q 003175 191 CRICF--RAGR-SVMLECDDCLGGFHLKCLKPPLKEV----PEGEWVCEFCEARK 238 (842)
Q Consensus 191 C~~C~--~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~----p~~~W~C~~C~~~~ 238 (842)
|.+|. ..+. +.||+|++|..|||..|+-|+.+.. |...|||..|..+.
T Consensus 171 c~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 171 CSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred eeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 55555 4444 7899999999999999999987543 44589999997654
No 323
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=97.67 E-value=2.5e-05 Score=87.65 Aligned_cols=48 Identities=31% Similarity=0.867 Sum_probs=41.2
Q ss_pred ccceeecc-cc--cccccCc--cCCCccccccCCCCCCCCCCCCccccccccccc
Q 003175 190 ECRICFRA-GR--SVMLECD--DCLGGFHLKCLKPPLKEVPEGEWVCEFCEARKL 239 (842)
Q Consensus 190 ~C~~C~~~-~~--~~~l~Cd--~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 239 (842)
-|.||.+. |. +.||+|| .|..+.|..|++ +..||.|.|||..|.....
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesqer 59 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQER 59 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhhhh
Confidence 46599875 33 7899999 699999999999 8999999999999987653
No 324
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.67 E-value=0.00066 Score=64.37 Aligned_cols=28 Identities=39% Similarity=0.667 Sum_probs=25.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
.-.++|+|+||+|||+++..++..|...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999865
No 325
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.64 E-value=0.00099 Score=72.89 Aligned_cols=92 Identities=13% Similarity=0.213 Sum_probs=58.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCce--EEEEecccCCChHHHHHHHHHHHhCCC--CCHH---H---
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYC--FVEVNGLKLASPENIYRVIYEALSGHR--VSWK---K--- 556 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~--~v~in~~~~~s~~~~~~~i~~~l~g~~--~~~~---~--- 556 (842)
|.-.+|+|++|+|||+|++.+++.+.... +++. ++.| +..-.+..+++..+...+.... .... .
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i~~~~-----~dv~~vv~lI-gER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~ 206 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAVAANH-----PEVHLMVLLI-DERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAE 206 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC-----CCceEEEEEe-cCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHH
Confidence 67789999999999999999999987542 1233 3333 3444566777777766553211 1111 1
Q ss_pred HHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 557 ALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 557 ~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
....+.+.|.+ .++.+|||+||+..++.
T Consensus 207 ~~~~~Ae~f~~-------~GkdVVLvlDsltr~A~ 234 (380)
T PRK12608 207 LVLERAKRLVE-------QGKDVVILLDSLTRLAR 234 (380)
T ss_pred HHHHHHHHHHH-------cCCCEEEEEeCcHHHHH
Confidence 11222333432 24779999999998765
No 326
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.63 E-value=0.0013 Score=72.16 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=25.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
|.-.+|+||+|+|||+|++.|++.+...
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 6678999999999999999999988754
No 327
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.62 E-value=2.2e-05 Score=88.33 Aligned_cols=53 Identities=34% Similarity=0.820 Sum_probs=46.4
Q ss_pred cccccccceeecccc-cccccCccCCCccccccCCCCCCCCCCCCccccccccc
Q 003175 185 DPEVEECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEAR 237 (842)
Q Consensus 185 ~~~~~~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 237 (842)
...+..|..|+..++ ...++|+.|+..||.+|..|++..+|.|.|+|+.|..-
T Consensus 65 C~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c 118 (694)
T KOG4443|consen 65 CPSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRC 118 (694)
T ss_pred cCCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhh
Confidence 445668988998777 77889999999999999999999999999999999543
No 328
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.61 E-value=0.0014 Score=67.66 Aligned_cols=150 Identities=15% Similarity=0.218 Sum_probs=85.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHH-HhCCCCCHHH---H----H
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEA-LSGHRVSWKK---A----L 558 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~-l~g~~~~~~~---~----~ 558 (842)
+-.+.|.|++|+|||+++..++..+... +..|++-+.... ...+..|+.. +.... .... . .
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~--------f~~I~l~t~~~n--~~~~~~i~p~~i~~~~-~~e~le~~l~~~k 81 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHK--------FDHIFLITPEYN--NEYYKYIWPDHIFKVF-DKEELEYILIRQK 81 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhccc--------CCEEEEEecCCc--hhhhhhcchhhccccc-cHHHHHHHHHHHH
Confidence 3468899999999999999999887754 445555444322 3344555432 22211 1111 1 1
Q ss_pred HHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCcee
Q 003175 559 HSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQR 638 (842)
Q Consensus 559 ~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~ 638 (842)
..+.+..... . ........+||||++..-. .+++.|..++... .+-++.+|.++.. .-.+.+.+++-+. ..
T Consensus 82 ~~I~k~~~k~-~-~~k~~~~~LiIlDD~~~~~-~k~~~l~~~~~~g--RH~~is~i~l~Q~---~~~lp~~iR~n~~-y~ 152 (241)
T PF04665_consen 82 EKIEKYIKKS-P-QKKNNPRFLIILDDLGDKK-LKSKILRQFFNNG--RHYNISIIFLSQS---YFHLPPNIRSNID-YF 152 (241)
T ss_pred HHHHHHhhhh-c-ccCCCCCeEEEEeCCCCch-hhhHHHHHHHhcc--cccceEEEEEeee---cccCCHHHhhcce-EE
Confidence 1122222111 0 1112457999999986411 2356677777533 3456777766655 2455666766555 34
Q ss_pred EEecCCCHHHHHHHHHHHh
Q 003175 639 LCFGPYNHQQLQEIISSRL 657 (842)
Q Consensus 639 i~f~p~~~~e~~~Il~~~l 657 (842)
+.| ..+..++..|+....
T Consensus 153 i~~-~~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 153 IIF-NNSKRDLENIYRNMN 170 (241)
T ss_pred EEe-cCcHHHHHHHHHhcc
Confidence 546 478888777776653
No 329
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.59 E-value=0.00076 Score=74.27 Aligned_cols=101 Identities=13% Similarity=0.175 Sum_probs=56.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCC--CCHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHR--VSWKKALHSLNER 564 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~--~~~~~~~~~L~~~ 564 (842)
|..++|+||+|+|||++++.+++.+...... ...++.+.+..-.+..+++..|...+.... .+...........
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfd----v~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPE----VELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCc----eEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 7889999999999999999999988644111 123555554544556666666532221111 1111111111111
Q ss_pred hhcccCCCCCCCCcEEEEEecCcccccC
Q 003175 565 FLDGKKIGKEDDRPCILLIDELDLLVTR 592 (842)
Q Consensus 565 f~~~~~~~~~~~~~~IlilDEid~L~~~ 592 (842)
+..+..+. ..++.+||||||++.+...
T Consensus 244 ~e~Ae~~~-~~GkdVVLlIDEitR~arA 270 (415)
T TIGR00767 244 IEKAKRLV-EHKKDVVILLDSITRLARA 270 (415)
T ss_pred HHHHHHHH-HcCCCeEEEEEChhHHHHH
Confidence 11111111 2246799999999998753
No 330
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.59 E-value=0.00051 Score=71.12 Aligned_cols=143 Identities=18% Similarity=0.109 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhC
Q 003175 470 EDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSG 549 (842)
Q Consensus 470 ~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g 549 (842)
++....+..++... .+..++||.|||||.+++.+++.+++ .++.+||....+.. .+.+.+.|
T Consensus 19 ~r~~~~l~~al~~~----~~~~~~GpagtGKtetik~La~~lG~----------~~~vfnc~~~~~~~----~l~ril~G 80 (231)
T PF12774_consen 19 DRCFLTLTQALSLN----LGGALSGPAGTGKTETIKDLARALGR----------FVVVFNCSEQMDYQ----SLSRILKG 80 (231)
T ss_dssp HHHHHHHHHHHCTT----TEEEEESSTTSSHHHHHHHHHHCTT------------EEEEETTSSS-HH----HHHHHHHH
T ss_pred HHHHHHHHHHhccC----CCCCCcCCCCCCchhHHHHHHHHhCC----------eEEEecccccccHH----HHHHHHHH
Confidence 44445555555443 44568999999999999999999984 48889999977742 22222222
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHh-------hcCCCC----------CCCcEE
Q 003175 550 HRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNI-------LDWPTK----------PNSKLI 612 (842)
Q Consensus 550 ~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~l-------l~~~~~----------~~~~vi 612 (842)
... ....+++||++.|......++.+. +..... -+....
T Consensus 81 --------------~~~----------~GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~ 136 (231)
T PF12774_consen 81 --------------LAQ----------SGAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCG 136 (231)
T ss_dssp --------------HHH----------HT-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-E
T ss_pred --------------Hhh----------cCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEcccee
Confidence 110 237999999999876543322221 111100 011233
Q ss_pred EEEEeCCC-CCccccchhhhccCCceeEEecCCCHHHHHHHHHHH
Q 003175 613 VIGIANTM-DLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSR 656 (842)
Q Consensus 613 vI~~tn~~-dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~ 656 (842)
++.+.|.- .-...+...++.-| +.+.+..||...+.+++-.-
T Consensus 137 iFiT~np~y~gr~~LP~nLk~lF--Rpvam~~PD~~~I~ei~L~s 179 (231)
T PF12774_consen 137 IFITMNPGYAGRSELPENLKALF--RPVAMMVPDLSLIAEILLLS 179 (231)
T ss_dssp EEEEE-B-CCCC--S-HHHCTTE--EEEE--S--HHHHHHHHHHC
T ss_pred EEEeeccccCCcccCCHhHHHHh--heeEEeCCCHHHHHHHHHHH
Confidence 44455531 11245566666666 55888888888877766433
No 331
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.59 E-value=7.5e-05 Score=78.17 Aligned_cols=101 Identities=14% Similarity=0.203 Sum_probs=57.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCC--CCCHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGH--RVSWKKALHSLNER 564 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~--~~~~~~~~~~L~~~ 564 (842)
|..++|+|++|+|||+|++.+++.+..... ....++++.+..-.+..+++..+...+.-. ..+...-.......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~f----dv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHP----EVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccC----CeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 678999999999999999999998864310 112355655554456667777662222110 11111111111111
Q ss_pred hhcccCCCCCCCCcEEEEEecCcccccC
Q 003175 565 FLDGKKIGKEDDRPCILLIDELDLLVTR 592 (842)
Q Consensus 565 f~~~~~~~~~~~~~~IlilDEid~L~~~ 592 (842)
+..+..+. ..++.+||||||++.+...
T Consensus 92 ~~~a~~~~-~~G~~vll~iDei~r~a~a 118 (249)
T cd01128 92 LEKAKRLV-EHGKDVVILLDSITRLARA 118 (249)
T ss_pred HHHHHHHH-HCCCCEEEEEECHHHhhhh
Confidence 11111111 1247799999999998654
No 332
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.59 E-value=0.0012 Score=74.45 Aligned_cols=172 Identities=15% Similarity=0.204 Sum_probs=88.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcc------cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQC------LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~------~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
+++.|.+.....|.-.|-........ .--++||.|-|||||+-.++++++-..+ -|...|..-
T Consensus 449 PsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~R-----------AV~tTGqGA 517 (854)
T KOG0477|consen 449 PSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPR-----------AVFTTGQGA 517 (854)
T ss_pred chhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcc-----------eeEeccCCc
Confidence 34567666666555555443222110 0238999999999999999988876543 233333322
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC-------
Q 003175 534 ASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK------- 606 (842)
Q Consensus 534 ~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~------- 606 (842)
++.. |-.....+.++.+ ..|+ +..+.- ....|-+|||+|.+......-+...++..+-
T Consensus 518 SavG-----LTa~v~KdPvtrE---WTLE-----aGALVL--ADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGI 582 (854)
T KOG0477|consen 518 SAVG-----LTAYVRKDPVTRE---WTLE-----AGALVL--ADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGI 582 (854)
T ss_pred cccc-----eeEEEeeCCccce---eeec-----cCeEEE--ccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhH
Confidence 1110 0000000000000 0010 000000 1235889999999988765556666653321
Q ss_pred ---CCCcEEEEEEeCCCC--------Ccc--ccchhhhccCCceeEE---ecCCCHHHHHH-HHHHHh
Q 003175 607 ---PNSKLIVIGIANTMD--------LPE--KLLPRISSRMGVQRLC---FGPYNHQQLQE-IISSRL 657 (842)
Q Consensus 607 ---~~~~vivI~~tn~~d--------l~~--~l~~~l~sR~~~~~i~---f~p~~~~e~~~-Il~~~l 657 (842)
-..+..||+++|.+. +.+ .+-..+.|||.+..+. +.|...+.+.+ ++..+.
T Consensus 583 VtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~ 650 (854)
T KOG0477|consen 583 VTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHV 650 (854)
T ss_pred HHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHh
Confidence 134678899999742 223 3456788999863333 44444444433 334444
No 333
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.57 E-value=0.00051 Score=66.76 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=30.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCC
Q 003175 490 LYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLA 534 (842)
Q Consensus 490 ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~ 534 (842)
++|+|+||+|||+++..++..+... ...++++++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-------~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-------GGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-------CCEEEEEECCcch
Confidence 6899999999999999999988642 1457888876543
No 334
>PHA02624 large T antigen; Provisional
Probab=97.56 E-value=0.00037 Score=79.92 Aligned_cols=52 Identities=19% Similarity=0.110 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 470 EDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 470 ~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
..+..+++..+.+-. ..++++|+||||||||+++.++++.|+. .++.||+..
T Consensus 415 ~~~~~~lk~~l~giP-Kk~~il~~GPpnTGKTtf~~sLl~~L~G----------~vlsVNsPt 466 (647)
T PHA02624 415 DVIYDILKLIVENVP-KRRYWLFKGPVNSGKTTLAAALLDLCGG----------KSLNVNCPP 466 (647)
T ss_pred HHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHcCC----------eEEEeeCCc
Confidence 556666666666532 3679999999999999999999999963 256677554
No 335
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.56 E-value=0.00017 Score=67.09 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=44.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
..+|||+|.||||||+|+..++..++ +.+|++..+....++|...-+...-+-+.-...++.|+..+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~------------~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG------------LEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC------------CceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHH
Confidence 57899999999999999999997655 67777777766666665443333222233334444444444
No 336
>PHA02774 E1; Provisional
Probab=97.56 E-value=0.00038 Score=79.51 Aligned_cols=44 Identities=27% Similarity=0.378 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 468 EMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 468 e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
++..+...|+..+++. +.-++++|+||||||||+++.++++.|.
T Consensus 416 ~~~~fl~~lk~~l~~~-PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 416 EFISFLTALKDFLKGI-PKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred cHHHHHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3345566666666543 2347999999999999999999999986
No 337
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00014 Score=87.23 Aligned_cols=163 Identities=18% Similarity=0.222 Sum_probs=96.6
Q ss_pred CCCc-HHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCC----ceEEEEecccCCCh
Q 003175 462 LPCR-NKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRP----YCFVEVNGLKLASP 536 (842)
Q Consensus 462 L~gR-e~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~----~~~v~in~~~~~s~ 536 (842)
+.|| +++++++.+.|.... .++-+|+|.||+|||.++.-+++.+.. ++.|. ..++.++-..+.
T Consensus 188 vigr~deeirRvi~iL~Rrt------k~NPvLVG~~gvgktaiv~gla~ri~~----G~vp~~l~~~~l~~l~~g~l~-- 255 (898)
T KOG1051|consen 188 VIGRHDEEIRRVIEILSRKT------KNNPVLVGEPGVGKTAIVEGLAQRIAT----GDVPETLKDKKLIALDFGSLV-- 255 (898)
T ss_pred ccCCchHHHHHHHHHHhccC------CCCceEEecCCCCchhHHHHHHHHhhc----CCCCccccccceEEEEhhhcc--
Confidence 5577 999999999987633 245689999999999999999998873 33332 234444422211
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChH----HHHHhhcCCCCCCCcEE
Q 003175 537 ENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQS----VLYNILDWPTKPNSKLI 612 (842)
Q Consensus 537 ~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~----~L~~ll~~~~~~~~~vi 612 (842)
.|.. ...+....+..+..+.. ..+..+||+|||++.|.....+ ..-+++.. .+....+.
T Consensus 256 -----------aGa~-~rge~E~rlk~l~k~v~----~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp-~L~rg~l~ 318 (898)
T KOG1051|consen 256 -----------AGAK-RRGEFEERLKELLKEVE----SGGGGVILFLGELHWLVGSGSNYGAIDAANLLKP-LLARGGLW 318 (898)
T ss_pred -----------cCcc-cchHHHHHHHHHHHHHh----cCCCcEEEEecceeeeecCCCcchHHHHHHhhHH-HHhcCCeE
Confidence 1211 11122233333333221 1246799999999999876532 22333321 12344499
Q ss_pred EEEEeCCCCCccc--cchhhhccCCceeEEecCCCHHHHHHHHHH
Q 003175 613 VIGIANTMDLPEK--LLPRISSRMGVQRLCFGPYNHQQLQEIISS 655 (842)
Q Consensus 613 vI~~tn~~dl~~~--l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~ 655 (842)
+||+|.-..+... -+|.+.+||.. +.++-++.++...||..
T Consensus 319 ~IGatT~e~Y~k~iekdPalErrw~l--~~v~~pS~~~~~~iL~~ 361 (898)
T KOG1051|consen 319 CIGATTLETYRKCIEKDPALERRWQL--VLVPIPSVENLSLILPG 361 (898)
T ss_pred EEecccHHHHHHHHhhCcchhhCcce--eEeccCcccchhhhhhh
Confidence 9998863222111 25788899976 56666666554444443
No 338
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.53 E-value=0.00027 Score=64.04 Aligned_cols=26 Identities=27% Similarity=0.557 Sum_probs=23.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHHh
Q 003175 490 LYIHGVPGTGKTMSVLAVMRSLRSEV 515 (842)
Q Consensus 490 ili~GppGtGKT~l~~~v~~~l~~~~ 515 (842)
|+|+|+||+|||++++.+++.+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 58999999999999999999998654
No 339
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.53 E-value=0.00048 Score=81.19 Aligned_cols=125 Identities=18% Similarity=0.266 Sum_probs=66.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCH------HHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSW------KKALHS 560 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~------~~~~~~ 560 (842)
.+.++|+|+||||||++++.++..+...... + ...|.+-+........+.+.+...+....... ......
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~---~-~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~T 242 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADG---E-RCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEAST 242 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCC---C-CcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHH
Confidence 3568899999999999999999888643111 1 12355554443333333333332221111000 001122
Q ss_pred HHHHhhcccC---CCCCCC---CcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 561 LNERFLDGKK---IGKEDD---RPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 561 L~~~f~~~~~---~~~~~~---~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
+...+..... ...... ..-||||||+-++. ...++.|++.. .++.++++||=.+.
T Consensus 243 iHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd---~~lm~~ll~al-~~~~rlIlvGD~~Q 303 (615)
T PRK10875 243 LHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD---LPMMARLIDAL-PPHARVIFLGDRDQ 303 (615)
T ss_pred HHHHhCcCCCccchhhccccCCCCCeEEEChHhccc---HHHHHHHHHhc-ccCCEEEEecchhh
Confidence 3332221100 000011 23599999999884 56777777754 35788999885443
No 340
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.52 E-value=0.0038 Score=73.60 Aligned_cols=174 Identities=13% Similarity=0.172 Sum_probs=101.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc-CCChHHHHHHHHHHHhCCCCC------------
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK-LASPENIYRVIYEALSGHRVS------------ 553 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~-~~s~~~~~~~i~~~l~g~~~~------------ 553 (842)
.+-++|.-|.|.|||+++-.++..+... ..+..+++.+ ..++..|++.+...+......
T Consensus 37 ~RL~li~APAGfGKttl~aq~~~~~~~~--------~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~ 108 (894)
T COG2909 37 YRLILISAPAGFGKTTLLAQWRELAADG--------AAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKH 108 (894)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHhcCcc--------cceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhc
Confidence 6889999999999999998887633211 2344554443 255778888888877521111
Q ss_pred -HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccch--h
Q 003175 554 -WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLP--R 629 (842)
Q Consensus 554 -~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~--~ 629 (842)
+......+...|.+... ...|++||||+.+.+.... ...|..+++.. ..++.+|.+|... |..... +
T Consensus 109 ~~~~l~~l~~~L~~Ela~----~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lvv~SR~r--P~l~la~lR 179 (894)
T COG2909 109 QYVSLESLLSSLLNELAS----YEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLVVTSRSR--PQLGLARLR 179 (894)
T ss_pred ccccHHHHHHHHHHHHHh----hcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEEEEeccC--CCCccccee
Confidence 11112234444444332 2478999999999987654 56677777743 4567777677542 111111 2
Q ss_pred hhccC---CceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCH
Q 003175 630 ISSRM---GVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDA 682 (842)
Q Consensus 630 l~sR~---~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~ 682 (842)
++.-+ +...+ .++.+|..+.+..+... .++...+..+-..+.+..+-+
T Consensus 180 lr~~llEi~~~~L---rf~~eE~~~fl~~~~~l--~Ld~~~~~~L~~~teGW~~al 230 (894)
T COG2909 180 LRDELLEIGSEEL---RFDTEEAAAFLNDRGSL--PLDAADLKALYDRTEGWAAAL 230 (894)
T ss_pred ehhhHHhcChHhh---cCChHHHHHHHHHcCCC--CCChHHHHHHHhhcccHHHHH
Confidence 21111 11112 34788988988888632 345555666555554444433
No 341
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.44 E-value=0.0059 Score=66.41 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 471 DITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 471 ~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+|.+.|....... ....++|+|++|||||+++..+......
T Consensus 9 el~~~l~~~~~~~--~~~r~vL~G~~GsGKS~~L~q~~~~A~~ 49 (309)
T PF10236_consen 9 ELINKLKEADKSS--KNNRYVLTGERGSGKSVLLAQAVHYARE 49 (309)
T ss_pred HHHHHHHHhcccC--CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4455555553333 3788999999999999988777766554
No 342
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.42 E-value=0.00065 Score=75.56 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=22.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l 511 (842)
..++|.|.||||||.|+-.++..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 357899999999999999999999
No 343
>PRK13695 putative NTPase; Provisional
Probab=97.41 E-value=0.0004 Score=68.97 Aligned_cols=75 Identities=24% Similarity=0.281 Sum_probs=49.6
Q ss_pred CcEEEEEecCcccccCC---hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHH
Q 003175 577 RPCILLIDELDLLVTRN---QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEII 653 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~---~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il 653 (842)
.+-+|+|||+..+.... .+.|.++++. + ..+|++++.. ....+..++..+.+...+.+.+-+.+++...+
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~~----~--~~~i~v~h~~-~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~ 168 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLDS----E--KPVIATLHRR-SVHPFVQEIKSRPGGRVYELTPENRDSLPFEI 168 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHhC----C--CeEEEEECch-hhHHHHHHHhccCCcEEEEEcchhhhhHHHHH
Confidence 56789999976543322 3445555532 2 3455567752 23355668888888788889998999888877
Q ss_pred HHHhc
Q 003175 654 SSRLK 658 (842)
Q Consensus 654 ~~~l~ 658 (842)
..+++
T Consensus 169 ~~~~~ 173 (174)
T PRK13695 169 LNRLK 173 (174)
T ss_pred HHHHh
Confidence 77664
No 344
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.38 E-value=0.00097 Score=81.94 Aligned_cols=146 Identities=18% Similarity=0.254 Sum_probs=91.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHH--HHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALH--SLNER 564 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~--~L~~~ 564 (842)
++.+++-|.||+|||+|+.++|+..+. .++.||.+..++.-++| |..+...+..+ -.+.-
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~----------kliRINLSeQTdL~DLf--------Gsd~Pve~~Gef~w~dap 1604 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGK----------KLIRINLSEQTDLCDLF--------GSDLPVEEGGEFRWMDAP 1604 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcC----------ceEEeeccccchHHHHh--------CCCCCcccCceeEecccH
Confidence 678999999999999999999999884 48999988766533222 33322111000 00011
Q ss_pred hhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC-----------CCCCcEEEEEEeCCCC---Cccccchhh
Q 003175 565 FLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT-----------KPNSKLIVIGIANTMD---LPEKLLPRI 630 (842)
Q Consensus 565 f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~-----------~~~~~vivI~~tn~~d---l~~~l~~~l 630 (842)
|-.+. +..--|+|||+........+-|...++... .-+..+.|+++-|.-+ -...|...+
T Consensus 1605 fL~am------r~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF 1678 (4600)
T COG5271 1605 FLHAM------RDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSF 1678 (4600)
T ss_pred HHHHh------hcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHH
Confidence 11111 234689999998764333344555555321 1234567777766422 123455678
Q ss_pred hccCCceeEEecCCCHHHHHHHHHHHhc
Q 003175 631 SSRMGVQRLCFGPYNHQQLQEIISSRLK 658 (842)
Q Consensus 631 ~sR~~~~~i~f~p~~~~e~~~Il~~~l~ 658 (842)
..||. +|.+..|+.+++..|+.....
T Consensus 1679 ~nRFs--vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1679 LNRFS--VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred hhhhh--eEEecccccchHHHHHHhhCC
Confidence 89996 499999999999999887764
No 345
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.37 E-value=6.4e-05 Score=81.25 Aligned_cols=82 Identities=23% Similarity=0.461 Sum_probs=56.7
Q ss_pred ccccccceeecccc---cccccCccCCCccccccCCCCCCCCCCCCcccccccccccCcc--ccCCCCCCCCcccccccc
Q 003175 186 PEVEECRICFRAGR---SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARKLGKK--IELPKPPEGKKRVRTMRE 260 (842)
Q Consensus 186 ~~~~~C~~C~~~~~---~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~~~--~~~~~~~~~~~~~~~~~~ 260 (842)
.-++.|.+|...+. +.+++||+|+-+.|..|+| +.-+|+|.|+|..|.-..-.-. ..+|.--.++.
T Consensus 191 ~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFk------- 261 (669)
T COG5141 191 EFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFK------- 261 (669)
T ss_pred hhhhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhcccccceeEEEeccCCCCcee-------
Confidence 34568989987754 7899999999999999999 7799999999999975432111 12332222222
Q ss_pred cccchhhhhhhhhceee
Q 003175 261 KLLSSDLWAANIQSMWK 277 (842)
Q Consensus 261 ~~~~~~~~~~~I~~i~~ 277 (842)
.....-|..-|+.||.
T Consensus 262 -qT~dgrW~H~iCA~~~ 277 (669)
T COG5141 262 -QTSDGRWGHVICAMFN 277 (669)
T ss_pred -eccCCchHhHhHHHhc
Confidence 1223456777777775
No 346
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.37 E-value=0.00096 Score=72.14 Aligned_cols=89 Identities=19% Similarity=0.167 Sum_probs=57.4
Q ss_pred CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCC---------CC
Q 003175 482 DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGH---------RV 552 (842)
Q Consensus 482 ~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~---------~~ 552 (842)
+|-+.++.+.|+||||+|||+|+..++.+.... .-.+++|++....++. ..+.+ |. ..
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~-------g~~v~yId~E~~~~~~-----~a~~l-Gvd~~~l~v~~p~ 116 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA-------GGTAAFIDAEHALDPV-----YARKL-GVDIDNLLVSQPD 116 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEcccchhHHH-----HHHHc-CCCHHHeEEecCC
Confidence 555567889999999999999999888777643 1347888877644432 12222 22 12
Q ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 553 SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 553 ~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
...+....+..... ...+.+||||-+..|..
T Consensus 117 ~~eq~l~~~~~li~--------~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 117 TGEQALEIAETLVR--------SGAVDIIVVDSVAALVP 147 (321)
T ss_pred CHHHHHHHHHHHhh--------ccCCcEEEEcchhhhcc
Confidence 33444444444332 13568999999998875
No 347
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.33 E-value=0.0038 Score=69.05 Aligned_cols=150 Identities=21% Similarity=0.237 Sum_probs=81.6
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcc------cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCC
Q 003175 461 FLPCRNKEMEDITAFIKGATCDDQC------LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLA 534 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~~~~------~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~ 534 (842)
++.|.++-.+.|.-.|-..-+..-+ .--++||.|.|||.|+-|++.|-+- . ..-||.+|..-.
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkv-s----------PIaVYTSGKGSS 400 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKV-S----------PIAVYTSGKGSS 400 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhc-C----------ceEEEecCCCcc
Confidence 4667777666666555432211100 0247999999999999999866432 2 235666665422
Q ss_pred ChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCC----------
Q 003175 535 SPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWP---------- 604 (842)
Q Consensus 535 s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~---------- 604 (842)
.. |...+....- .-++.+-++..+. -....|+.|||+|.+.....-++...++..
T Consensus 401 AA------------GLTASV~RD~-~tReFylEGGAMV--LADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGIT 465 (729)
T KOG0481|consen 401 AA------------GLTASVIRDP-STREFYLEGGAMV--LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGIT 465 (729)
T ss_pred cc------------cceeeEEecC-CcceEEEecceEE--EecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcce
Confidence 11 1111100000 0000011111100 013369999999999887655555555432
Q ss_pred CCCCCcEEEEEEeCCC-----CCc---c--ccchhhhccCCc
Q 003175 605 TKPNSKLIVIGIANTM-----DLP---E--KLLPRISSRMGV 636 (842)
Q Consensus 605 ~~~~~~vivI~~tn~~-----dl~---~--~l~~~l~sR~~~ 636 (842)
+.-+++..|++++|.+ |+. + .+.+.++|||+.
T Consensus 466 T~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDm 507 (729)
T KOG0481|consen 466 TTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDM 507 (729)
T ss_pred eeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccE
Confidence 1236778888899863 111 2 356899999984
No 348
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.32 E-value=0.0003 Score=78.42 Aligned_cols=45 Identities=27% Similarity=0.468 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 467 KEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 467 ~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
.|.+++.+.+-.++.... +..++|.|+.|||||++++++...+..
T Consensus 4 ~eQ~~~~~~v~~~~~~~~--~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIENEE--GLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHHHHccC--CcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 445555555545554443 789999999999999999999998864
No 349
>PRK05629 hypothetical protein; Validated
Probab=97.32 E-value=0.025 Score=62.04 Aligned_cols=198 Identities=8% Similarity=0.073 Sum_probs=111.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
....+||||+-- .++......+...........+.++++++.... ...+. +..
T Consensus 5 l~~vyL~~G~e~----~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~-~~~l~----~~~------------------ 57 (318)
T PRK05629 5 QPPVHLVLGDDE----FLAERARLNIVHDIRSSMADSLQVTTLKASEVS-QGELL----DAL------------------ 57 (318)
T ss_pred CCceEEEEeCHH----HHHHHHHHHHHHHHhccCCCCCceEEeecccCC-HHHHH----Hhh------------------
Confidence 457788999764 445444444433332223344788888877643 11111 111
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCC
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYN 645 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~ 645 (842)
..++. ...-+|+|+..+.+.....+.|...+..+. ...++|| +....+-...+-+.+.... ..+.|.++.
T Consensus 58 --t~slF---~~~rlV~v~~~~~~~~~~~~~l~~~l~~~~--~~~~Lil-~~~~~~~~kk~~K~l~k~~--~~ve~~~~~ 127 (318)
T PRK05629 58 --SPSLF---GEDRVIVLTNMEQAGKEPTDLALSAAVDPS--PGIYLII-MHSGGGRTKSMVPKLEKIA--VVHEAAKLK 127 (318)
T ss_pred --CcCcc---CCceEEEEeChHhcChhHHHHHHHHHhCCC--CCeEEEE-EcCCcchhhHHHHHHHhcc--eEeeCCCCC
Confidence 01111 244688888877644333445555554332 2223333 3332222222223443333 458888899
Q ss_pred HHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHH
Q 003175 646 HQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEA 724 (842)
Q Consensus 646 ~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~ 724 (842)
..++...+..+++..+ .+++++++++...+ .+|+..+.+-+.+... . ....||.++|.+
T Consensus 128 ~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~---g~dl~~l~~EleKL~~---~--------------~~~~It~e~V~~ 187 (318)
T PRK05629 128 PRERPGWVTQEFKNHGVRPTPDVVHALLEGV---GSDLRELASAISQLVE---D--------------TQGNVTVEKVRA 187 (318)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---CccHHHHHHHHHHHHh---c--------------CCCCcCHHHHHH
Confidence 9999999999998877 89999999877664 6677655444443221 1 124699999988
Q ss_pred HHHHHhhChHHHHHhh
Q 003175 725 AIQEMFQAPHIQVMKS 740 (842)
Q Consensus 725 A~~~~~~~~~~~~l~~ 740 (842)
.+.........+.+..
T Consensus 188 ~v~~~~~~~iF~l~dA 203 (318)
T PRK05629 188 YYVGVAEVSGFDIADL 203 (318)
T ss_pred HhCCCccchHHHHHHH
Confidence 8765544444444444
No 350
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0015 Score=71.05 Aligned_cols=117 Identities=20% Similarity=0.334 Sum_probs=69.1
Q ss_pred hhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCC-----CCC
Q 003175 479 ATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGH-----RVS 553 (842)
Q Consensus 479 ~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~-----~~~ 553 (842)
.+-+|--+|..+||-|.||.|||||+..++..+... -+++||.+.+-. .++ +.-.+-| |. .+-
T Consensus 85 VLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~--------~~vLYVsGEES~--~Qi-klRA~RL-~~~~~~l~l~ 152 (456)
T COG1066 85 VLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR--------GKVLYVSGEESL--QQI-KLRADRL-GLPTNNLYLL 152 (456)
T ss_pred hhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhc--------CcEEEEeCCcCH--HHH-HHHHHHh-CCCccceEEe
Confidence 344444457889999999999999999999998854 259999988632 221 1112222 21 111
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhhcCCCCCCCcEEEEE
Q 003175 554 WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNILDWPTKPNSKLIVIG 615 (842)
Q Consensus 554 ~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll~~~~~~~~~vivI~ 615 (842)
.+..++.+.+.+.+ .+|.++|||-|+.+.... .+.-..|+++....+..+++||
T Consensus 153 aEt~~e~I~~~l~~--------~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG 217 (456)
T COG1066 153 AETNLEDIIAELEQ--------EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG 217 (456)
T ss_pred hhcCHHHHHHHHHh--------cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 11122223333322 378999999999988754 1334445554434444555554
No 351
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.31 E-value=0.0014 Score=70.90 Aligned_cols=98 Identities=17% Similarity=0.145 Sum_probs=59.8
Q ss_pred Hhhc-CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHH----HHHHhCCCC
Q 003175 478 GATC-DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVI----YEALSGHRV 552 (842)
Q Consensus 478 ~~i~-~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i----~~~l~g~~~ 552 (842)
.++. +|-+.++.+.|+||||+|||+|+..++...... + -.++||+.....++.. ...+ .+.+.-...
T Consensus 45 ~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~---g----~~~vyId~E~~~~~~~-a~~lGvd~~~l~v~~p~ 116 (325)
T cd00983 45 IALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL---G----GTVAFIDAEHALDPVY-AKKLGVDLDNLLISQPD 116 (325)
T ss_pred HHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc---C----CCEEEECccccHHHHH-HHHcCCCHHHheecCCC
Confidence 3444 555567889999999999999999988777543 1 3478888766444321 1111 111111122
Q ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 553 SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 553 ~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
+..+....+..... .....+||||-+-.|..
T Consensus 117 ~~eq~l~i~~~li~--------s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 117 TGEQALEIADSLVR--------SGAVDLIVVDSVAALVP 147 (325)
T ss_pred CHHHHHHHHHHHHh--------ccCCCEEEEcchHhhcc
Confidence 34455555544432 23568999999988874
No 352
>PRK04296 thymidine kinase; Provisional
Probab=97.30 E-value=0.00031 Score=70.84 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
|...+|+|++|+|||+++..++..+..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~ 28 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE 28 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 456889999999999999988888764
No 353
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.0018 Score=71.49 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..++|+||+|+||||++..++..+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998865
No 354
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.29 E-value=0.0012 Score=77.66 Aligned_cols=125 Identities=18% Similarity=0.229 Sum_probs=61.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCH------HHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSW------KKALHS 560 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~------~~~~~~ 560 (842)
.+..+|+|+||||||+++..++..+........ .. -|.+-+........+.+.+...+....... ......
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~--~~-~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~T 236 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALVKQSPKQG--KL-RIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVT 236 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccC--CC-cEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccch
Confidence 366889999999999999999988865422111 01 133333322222222333322211100000 000011
Q ss_pred HHHHhhccc---CCC---CCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeC
Q 003175 561 LNERFLDGK---KIG---KEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIAN 618 (842)
Q Consensus 561 L~~~f~~~~---~~~---~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn 618 (842)
+...+.... ... ...-..-+|||||+-++. ...+..|++.. ..+.+++++|=.+
T Consensus 237 iHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd---~~l~~~ll~al-~~~~rlIlvGD~~ 296 (586)
T TIGR01447 237 IHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD---LPLMAKLLKAL-PPNTKLILLGDKN 296 (586)
T ss_pred hhhhhcccCCcchhhhcccCCCcccEEEEcccccCC---HHHHHHHHHhc-CCCCEEEEECChh
Confidence 111111100 000 011234699999999885 45677777643 3467888887433
No 355
>PTZ00494 tuzin-like protein; Provisional
Probab=97.29 E-value=0.0091 Score=65.60 Aligned_cols=174 Identities=17% Similarity=0.181 Sum_probs=98.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChH
Q 003175 458 LPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPE 537 (842)
Q Consensus 458 ~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~ 537 (842)
.+..++.|+.|-..+.+.|...-.. .++.+.|+|..|+||++|.+.....-.- ..-||.|-+.+.
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~a---HPRIvV~TG~~GcGKSslcRsAvrkE~~--------paV~VDVRg~ED---- 433 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAPS---HPRIVALAGGSGGGRCVPCRRAVRVEGV--------ALVHVDVGGTED---- 433 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccCC---CCcEEEEecCCCCCchHHHHHHHHHcCC--------CeEEEEecCCcc----
Confidence 3455889999988888888774433 3789999999999999999977665431 133555544432
Q ss_pred HHHHHHHHHHhCCCC-CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEE
Q 003175 538 NIYRVIYEALSGHRV-SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGI 616 (842)
Q Consensus 538 ~~~~~i~~~l~g~~~-~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~ 616 (842)
.+..|...+.-.++ .-.+.++.+.+.+..+.......-.-.|+=|-|-..|..--.+.+.-..| ..-.+|++= +
T Consensus 434 -tLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacD---rRlCHvv~E-V 508 (664)
T PTZ00494 434 -TLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSD---CQACHIVLA-V 508 (664)
T ss_pred -hHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHcc---chhheeeee-c
Confidence 24455555532222 12456777777777665422222222344455665553221222211111 112233321 1
Q ss_pred eCCCCCcccc--chhhhccCCceeEEecCCCHHHHHHHHHHHhc
Q 003175 617 ANTMDLPEKL--LPRISSRMGVQRLCFGPYNHQQLQEIISSRLK 658 (842)
Q Consensus 617 tn~~dl~~~l--~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~ 658 (842)
. .+.| ....+-|+++ ..+|+++..|-.+..++.+.
T Consensus 509 --p---lESLT~~n~~LPRLDF--y~VPnFSr~QAf~YtqH~lD 545 (664)
T PTZ00494 509 --P---MKALTPLNVSSRRLDF--YCIPPFSRRQAFAYAEHTLD 545 (664)
T ss_pred --h---HhhhchhhccCcccee--EecCCcCHHHHHHHHhcccc
Confidence 1 1111 1122335554 78999999999999998875
No 356
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.27 E-value=0.00044 Score=76.80 Aligned_cols=46 Identities=26% Similarity=0.295 Sum_probs=35.1
Q ss_pred hcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 480 TCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 480 i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
+.++-..+..++|+|+||+|||+++..++..+.... ..++|+++..
T Consensus 75 LgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g-------~~VlYvs~EE 120 (372)
T cd01121 75 LGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-------GKVLYVSGEE 120 (372)
T ss_pred hcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-------CeEEEEECCc
Confidence 344444578899999999999999999998876431 3588888764
No 357
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=97.27 E-value=4.1e-05 Score=53.98 Aligned_cols=34 Identities=41% Similarity=1.094 Sum_probs=20.6
Q ss_pred cccccCccCCCccccccCCCCCCCCCCC-Cccccccc
Q 003175 200 SVMLECDDCLGGFHLKCLKPPLKEVPEG-EWVCEFCE 235 (842)
Q Consensus 200 ~~~l~Cd~C~~~~H~~C~~p~l~~~p~~-~W~C~~C~ 235 (842)
+.||.|+.|....|..|++ +..+|.+ +|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 3599999999999999999 7788887 89999884
No 358
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.25 E-value=0.0012 Score=80.23 Aligned_cols=121 Identities=19% Similarity=0.315 Sum_probs=65.4
Q ss_pred cHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHH
Q 003175 465 RNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIY 544 (842)
Q Consensus 465 Re~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~ 544 (842)
-++|.+.+..++.. .+.++|.|++|||||++++.+...+... + ..++.+-. +. ..-..|.
T Consensus 354 s~~Q~~Av~~i~~s--------~~~~il~G~aGTGKTtll~~i~~~~~~~---g----~~V~~~Ap---Tg--~Aa~~L~ 413 (744)
T TIGR02768 354 SEEQYEAVRHVTGS--------GDIAVVVGRAGTGKSTMLKAAREAWEAA---G----YRVIGAAL---SG--KAAEGLQ 413 (744)
T ss_pred CHHHHHHHHHHhcC--------CCEEEEEecCCCCHHHHHHHHHHHHHhC---C----CeEEEEeC---cH--HHHHHHH
Confidence 35666655544421 3567899999999999999998877642 1 33443321 11 1112222
Q ss_pred HHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEE
Q 003175 545 EALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIG 615 (842)
Q Consensus 545 ~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~ 615 (842)
+. .|... .....+...|.... .......+|||||+-++.. ..+..|++.....+.+++|||
T Consensus 414 ~~-~g~~a---~Ti~~~~~~~~~~~---~~~~~~~llIvDEasMv~~---~~~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 414 AE-SGIES---RTLASLEYAWANGR---DLLSDKDVLVIDEAGMVGS---RQMARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred hc-cCCce---eeHHHHHhhhccCc---ccCCCCcEEEEECcccCCH---HHHHHHHHHHHhcCCEEEEEC
Confidence 21 23221 11111211121111 1113568999999999864 445566654334578888887
No 359
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.24 E-value=0.0011 Score=80.20 Aligned_cols=127 Identities=16% Similarity=0.172 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHH
Q 003175 465 RNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIY 544 (842)
Q Consensus 465 Re~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~ 544 (842)
.+.|.+.+..++. .+.++|+|+||||||++++.++..+..... ...+.+-+.... ....|.
T Consensus 325 ~~~Q~~Ai~~~~~---------~~~~iitGgpGTGKTt~l~~i~~~~~~~~~------~~~v~l~ApTg~----AA~~L~ 385 (720)
T TIGR01448 325 SEEQKQALDTAIQ---------HKVVILTGGPGTGKTTITRAIIELAEELGG------LLPVGLAAPTGR----AAKRLG 385 (720)
T ss_pred CHHHHHHHHHHHh---------CCeEEEECCCCCCHHHHHHHHHHHHHHcCC------CceEEEEeCchH----HHHHHH
Confidence 4556555554431 357899999999999999999998774310 112333322211 112333
Q ss_pred HHHhCCC-CCHHHHHHHHHHHhhcccC--CCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 545 EALSGHR-VSWKKALHSLNERFLDGKK--IGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 545 ~~l~g~~-~~~~~~~~~L~~~f~~~~~--~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
+.. |.. .+.... |. ....... .........+|||||+..+. ...+..|+.... .+.++++||=.+.
T Consensus 386 e~~-g~~a~Tih~l---L~-~~~~~~~~~~~~~~~~~~llIvDEaSMvd---~~~~~~Ll~~~~-~~~rlilvGD~~Q 454 (720)
T TIGR01448 386 EVT-GLTASTIHRL---LG-YGPDTFRHNHLEDPIDCDLLIVDESSMMD---TWLALSLLAALP-DHARLLLVGDTDQ 454 (720)
T ss_pred Hhc-CCccccHHHH---hh-ccCCccchhhhhccccCCEEEEeccccCC---HHHHHHHHHhCC-CCCEEEEECcccc
Confidence 322 221 111111 11 0000000 00011245799999999985 455666666432 5678999885444
No 360
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.24 E-value=0.0016 Score=68.96 Aligned_cols=175 Identities=13% Similarity=0.177 Sum_probs=87.9
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHH
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYR 541 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~ 541 (842)
|+--++.++.|.++.+ .+... ++++++.|..|+||+++++.++--.+ +.++.+.....-+..++
T Consensus 10 lVlf~~ai~hi~ri~R-vL~~~---~Gh~LLvG~~GsGr~sl~rLaa~i~~----------~~~~~i~~~~~y~~~~f-- 73 (268)
T PF12780_consen 10 LVLFDEAIEHIARISR-VLSQP---RGHALLVGVGGSGRQSLARLAAFICG----------YEVFQIEITKGYSIKDF-- 73 (268)
T ss_dssp ----HHHHHHHHHHHH-HHCST---TEEEEEECTTTSCHHHHHHHHHHHTT----------EEEE-TTTSTTTHHHHH--
T ss_pred eeeHHHHHHHHHHHHH-HHcCC---CCCeEEecCCCccHHHHHHHHHHHhc----------cceEEEEeeCCcCHHHH--
Confidence 4444566666655554 34333 58899999999999999996555443 56777764432222222
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChH--------------------------
Q 003175 542 VIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQS-------------------------- 595 (842)
Q Consensus 542 ~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~-------------------------- 595 (842)
.+.|...+..+ +..+++++++|+|-+.....--+
T Consensus 74 ----------------~~dLk~~~~~a----g~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~ 133 (268)
T PF12780_consen 74 ----------------KEDLKKALQKA----GIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISS 133 (268)
T ss_dssp ----------------HHHHHHHHHHH----HCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHH
T ss_pred ----------------HHHHHHHHHHH----hccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Confidence 22233333222 12346677777776543211001
Q ss_pred ---------------HHHHhhcCCCCCCCcEEEEEEeCCCCCcc--ccchhhhccCCceeEEecCCCHHHHHHHHHHHhc
Q 003175 596 ---------------VLYNILDWPTKPNSKLIVIGIANTMDLPE--KLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLK 658 (842)
Q Consensus 596 ---------------~L~~ll~~~~~~~~~vivI~~tn~~dl~~--~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~ 658 (842)
.++++|-.....+-+|+++.......+.. +..|.+.+++. ...|.+++.+.+..+....++
T Consensus 134 l~~~~~~~~~~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ct--IdW~~~W~~eaL~~Va~~~l~ 211 (268)
T PF12780_consen 134 LREEAKAEGISDSRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCT--IDWFDPWPEEALLSVANKFLS 211 (268)
T ss_dssp HHHHHHHCT--SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSE--EEEEES--HHHHHHHHHHHCC
T ss_pred hHHHHHHcCCCCchHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccE--EEeCCcCCHHHHHHHHHHHHH
Confidence 12222211111222344432221222333 22467777774 588999999999999999888
Q ss_pred CcccCcHHHHHHHHHH
Q 003175 659 GIEAFEKQAIEFASRK 674 (842)
Q Consensus 659 ~~~~~~~~~l~~ia~~ 674 (842)
.....+++..+.++..
T Consensus 212 ~~~~~~~~~~~~l~~~ 227 (268)
T PF12780_consen 212 DIELLSEELKKSLAEI 227 (268)
T ss_dssp HHHTSS--HHHHHHHH
T ss_pred hhcccchhHHHHHHHH
Confidence 6554554444444433
No 361
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.23 E-value=0.0023 Score=72.09 Aligned_cols=124 Identities=16% Similarity=0.197 Sum_probs=75.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcc
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDG 568 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~ 568 (842)
.++|+||+++|||++++.+.+.+... .+++|-.+......-. .+....+.+.+..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~----------~iy~~~~d~~~~~~~l--------------~d~~~~~~~~~~~- 93 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE----------IIYINFDDLRLDRIEL--------------LDLLRAYIELKER- 93 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc----------eEEEEecchhcchhhH--------------HHHHHHHHHhhcc-
Confidence 89999999999999997766665421 5677654433221100 1111222222111
Q ss_pred cCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHH
Q 003175 569 KKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQ 648 (842)
Q Consensus 569 ~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e 648 (842)
....||||||+.+-. -+..|..+.+.... +|++.|.+. ..+...+...+..|. ..+.+.|++..|
T Consensus 94 --------~~~yifLDEIq~v~~-W~~~lk~l~d~~~~---~v~itgsss-~ll~~~~~~~L~GR~--~~~~l~PlSF~E 158 (398)
T COG1373 94 --------EKSYIFLDEIQNVPD-WERALKYLYDRGNL---DVLITGSSS-SLLSKEISESLAGRG--KDLELYPLSFRE 158 (398)
T ss_pred --------CCceEEEecccCchh-HHHHHHHHHccccc---eEEEECCch-hhhccchhhhcCCCc--eeEEECCCCHHH
Confidence 347999999998854 36677777774422 566665443 333344445566664 569999999999
Q ss_pred HHHH
Q 003175 649 LQEI 652 (842)
Q Consensus 649 ~~~I 652 (842)
...+
T Consensus 159 fl~~ 162 (398)
T COG1373 159 FLKL 162 (398)
T ss_pred HHhh
Confidence 8653
No 362
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.23 E-value=0.00039 Score=68.37 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=36.1
Q ss_pred CcEEEEEecCcccccCC---hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHH
Q 003175 577 RPCILLIDELDLLVTRN---QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQ 650 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~---~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~ 650 (842)
..-+||||||..|--.. .+.+..+|+ .+ ..+||+-... ....+..++.+|-+...+.+.+-+.+.+.
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~----s~--~~vi~vv~~~-~~~~~l~~i~~~~~~~i~~vt~~NRd~l~ 164 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLD----SN--KPVIGVVHKR-SDNPFLEEIKRRPDVKIFEVTEENRDALP 164 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHC----TT--SEEEEE--SS---SCCHHHHHTTTTSEEEE--TTTCCCHH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHc----CC--CcEEEEEecC-CCcHHHHHHHhCCCcEEEEeChhHHhhHh
Confidence 44699999999887655 456777776 12 2345554331 12346778888866566777766665543
No 363
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.22 E-value=0.0016 Score=59.88 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=48.8
Q ss_pred HHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCC--eEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 446 LERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGR--CLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 446 ~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~--~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+...+..|. ..|.|..-..+.|..+|...+.+.. +.. .+-|+|++|||||.+++.+|+.|...
T Consensus 16 ~~~L~~~L~-----~~l~GQhla~~~v~~ai~~~l~~~~-p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~ 80 (127)
T PF06309_consen 16 ITGLEKDLQ-----RNLFGQHLAVEVVVNAIKGHLANPN-PRKPLVLSFHGWTGTGKNFVSRLIAEHLYKS 80 (127)
T ss_pred HHHHHHHHH-----HHccCcHHHHHHHHHHHHHHHcCCC-CCCCEEEEeecCCCCcHHHHHHHHHHHHHhc
Confidence 344455555 4577999999999999999887743 333 44488999999999999999998865
No 364
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.21 E-value=0.0077 Score=65.52 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=39.1
Q ss_pred CcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 464 CRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 464 gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+-++.++.|.+++..++.+.......++++|+.|+|||++++.+..-++.
T Consensus 53 ~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~ 102 (304)
T TIGR01613 53 GDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGD 102 (304)
T ss_pred CCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHhCh
Confidence 44456778888888888775555778899999999999999977666653
No 365
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.21 E-value=0.0014 Score=67.23 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=58.5
Q ss_pred hhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHH---HhCC-----
Q 003175 479 ATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEA---LSGH----- 550 (842)
Q Consensus 479 ~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~---l~g~----- 550 (842)
.+.+|-+.+..++|+|+||+|||+++..++...... ...++||++.. .++..+.+..... ..+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~-------g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~ 75 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQ-------GKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFE 75 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEE
Confidence 345565568899999999999999999988877532 14589999876 4554444432211 1010
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccc
Q 003175 551 RVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLV 590 (842)
Q Consensus 551 ~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~ 590 (842)
.....+....+....... ....+.+||||-+..+.
T Consensus 76 ~~~~~~~~~~~~~l~~~~-----~~~~~~lvVIDSis~l~ 110 (209)
T TIGR02237 76 VFDFDEQGVAIQKTSKFI-----DRDSASLVVVDSFTALY 110 (209)
T ss_pred CCCHHHHHHHHHHHHHHH-----hhcCccEEEEeCcHHHh
Confidence 012222222222221111 11256899999999875
No 366
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.21 E-value=0.0005 Score=78.49 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=48.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
..+.|.++.+++|..+|..+..+.......++|.||||+|||+|++.+++.+..-
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 4577999999999999988877755567899999999999999999999988753
No 367
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.19 E-value=0.0025 Score=78.60 Aligned_cols=110 Identities=20% Similarity=0.258 Sum_probs=59.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhc
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLD 567 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~ 567 (842)
..++|.|.+|||||++++.+...+... + ..++-+- . +. ..-..|.+ ..|.. ...+..+...|..
T Consensus 363 ~v~vv~G~AGTGKTT~l~~~~~~~e~~---G----~~V~~~A-p--TG--kAA~~L~e-~tGi~---a~TI~sll~~~~~ 426 (988)
T PRK13889 363 DLGVVVGYAGTGKSAMLGVAREAWEAA---G----YEVRGAA-L--SG--IAAENLEG-GSGIA---SRTIASLEHGWGQ 426 (988)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc---C----CeEEEec-C--cH--HHHHHHhh-ccCcc---hhhHHHHHhhhcc
Confidence 457799999999999998877665532 1 2333322 1 11 11122221 11211 1222223222221
Q ss_pred ccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 568 GKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 568 ~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
.. .......||||||+-.+.. ..+..|+......+.+|++||=.+.
T Consensus 427 ~~---~~l~~~~vlIVDEASMv~~---~~m~~LL~~a~~~garvVLVGD~~Q 472 (988)
T PRK13889 427 GR---DLLTSRDVLVIDEAGMVGT---RQLERVLSHAADAGAKVVLVGDPQQ 472 (988)
T ss_pred cc---cccccCcEEEEECcccCCH---HHHHHHHHhhhhCCCEEEEECCHHH
Confidence 11 1123457999999998854 4566666654456788999884443
No 368
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.16 E-value=0.0018 Score=67.23 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=36.0
Q ss_pred HhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 478 GATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 478 ~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
..+.+|-..+..++|+|+||+|||+++..++.+.... ...++|+++.
T Consensus 14 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~-------~~~v~yi~~e 60 (225)
T PRK09361 14 ELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN-------GKKVIYIDTE 60 (225)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEECC
Confidence 3444555557889999999999999999998877532 1458888887
No 369
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.16 E-value=0.0014 Score=65.62 Aligned_cols=36 Identities=28% Similarity=0.212 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
.++|+|+||||||+++..++...... + -.++|++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~---g----~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR---G----EPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC---C----CcEEEEECC
Confidence 37899999999999999888876532 1 346777654
No 370
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.16 E-value=0.0012 Score=75.52 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=35.6
Q ss_pred hhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 479 ATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 479 ~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
.+.+|-..+..++|+|+||+|||+++..++..+... ...++|+++..
T Consensus 72 ~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-------g~~vlYvs~Ee 118 (446)
T PRK11823 72 VLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-------GGKVLYVSGEE 118 (446)
T ss_pred HhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEccc
Confidence 344454457889999999999999999999887632 14588888754
No 371
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.16 E-value=0.00056 Score=73.07 Aligned_cols=105 Identities=22% Similarity=0.246 Sum_probs=62.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHH---hCCCCCHHHHHHHHH
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEAL---SGHRVSWKKALHSLN 562 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l---~g~~~~~~~~~~~L~ 562 (842)
+++++|++|+-|.|||.|+..+...+.-... .. .--+.+...+.+.+ .|+.........
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k----~R-----------~HFh~FM~~vH~~l~~l~g~~dpl~~iA~--- 125 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESLPGERK----RR-----------LHFHRFMARVHQRLHTLQGQTDPLPPIAD--- 125 (367)
T ss_pred CCceEEEECCCCccHHHHHHHHHhhCCcccc----cc-----------ccHHHHHHHHHHHHHHHcCCCCccHHHHH---
Confidence 5799999999999999999999888763210 00 11123333333332 244322211111
Q ss_pred HHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCC
Q 003175 563 ERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTM 620 (842)
Q Consensus 563 ~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~ 620 (842)
+.+ +..-||.|||++.=.-.+.-+|-.||+... ...|+||+|||..
T Consensus 126 ~~~----------~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf--~~GV~lvaTSN~~ 171 (367)
T COG1485 126 ELA----------AETRVLCFDEFEVTDIADAMILGRLLEALF--ARGVVLVATSNTA 171 (367)
T ss_pred HHH----------hcCCEEEeeeeeecChHHHHHHHHHHHHHH--HCCcEEEEeCCCC
Confidence 122 244699999997543334445555555322 3478999999974
No 372
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.11 E-value=0.00034 Score=82.90 Aligned_cols=59 Identities=32% Similarity=0.773 Sum_probs=51.2
Q ss_pred ccccceeecccccccccCccCCCccccccCCCCCCCCCCCCcccccccccccCccccCCCC
Q 003175 188 VEECRICFRAGRSVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARKLGKKIELPKP 248 (842)
Q Consensus 188 ~~~C~~C~~~~~~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~~~~~~~~~ 248 (842)
++.|.+|.+.++ ++||..|++.||+.|+.||+.++|...|-|-.|...+..+.+.+--+
T Consensus 344 ddhcrf~~d~~~--~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~ 402 (1414)
T KOG1473|consen 344 DDHCRFCHDLGD--LLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLP 402 (1414)
T ss_pred cccccccCcccc--eeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccC
Confidence 467999999988 99999999999999999999999999999999987776665544433
No 373
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.11 E-value=0.0018 Score=65.46 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
...+++.||.|||||+|+-+.+.++-..
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~ 46 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKE 46 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 4678999999999999999888776543
No 374
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.10 E-value=0.0036 Score=65.35 Aligned_cols=48 Identities=15% Similarity=0.098 Sum_probs=34.7
Q ss_pred HHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 477 KGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 477 ~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
...+.+|-+.+..++|+|+||+|||+++..++...... + -.++|++..
T Consensus 15 D~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g----~~~~y~~~e 62 (234)
T PRK06067 15 DRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ---G----KKVYVITTE 62 (234)
T ss_pred HHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC---C----CEEEEEEcC
Confidence 33445565568899999999999999999987654322 1 357777764
No 375
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.0028 Score=62.44 Aligned_cols=28 Identities=32% Similarity=0.554 Sum_probs=25.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHhh
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLRSEVE 516 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~~~~~ 516 (842)
-++++|+||+|||++++.+++.|.+..+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 4789999999999999999999997643
No 376
>PRK09354 recA recombinase A; Provisional
Probab=97.09 E-value=0.0028 Score=69.19 Aligned_cols=98 Identities=17% Similarity=0.145 Sum_probs=60.2
Q ss_pred Hhhc-CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHH----HHHHhCCCC
Q 003175 478 GATC-DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVI----YEALSGHRV 552 (842)
Q Consensus 478 ~~i~-~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i----~~~l~g~~~ 552 (842)
.++. +|-+.++.+.|+||+|+|||+|+..++...... + -.++||+...-.++.. ...+ .+.+.-...
T Consensus 50 ~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~---G----~~~~yId~E~s~~~~~-a~~lGvdld~lli~qp~ 121 (349)
T PRK09354 50 IALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA---G----GTAAFIDAEHALDPVY-AKKLGVDIDNLLVSQPD 121 (349)
T ss_pred HHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc---C----CcEEEECCccchHHHH-HHHcCCCHHHeEEecCC
Confidence 3444 555557889999999999999999888776543 1 3478998876554421 1111 011111122
Q ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 553 SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 553 ~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
+..+.+..+..... ...+.+||||-+-.|..
T Consensus 122 ~~Eq~l~i~~~li~--------s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 122 TGEQALEIADTLVR--------SGAVDLIVVDSVAALVP 152 (349)
T ss_pred CHHHHHHHHHHHhh--------cCCCCEEEEeChhhhcc
Confidence 34455555554432 23568999999998875
No 377
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.05 E-value=0.0044 Score=66.27 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=48.3
Q ss_pred HHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEE
Q 003175 448 RAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVE 527 (842)
Q Consensus 448 ~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~ 527 (842)
.+++.|..+-+|.-+++.++ .+ +|-..+..++|.|+||+|||+++..++..+.... ...+++
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~-----------~~-gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~------g~~vl~ 64 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNK-----------LT-KGLRKGELIILTAGTGVGKTTFLREYALDLITQH------GVRVGT 64 (271)
T ss_pred hhhccccccCCCCCcceeee-----------ee-EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc------CceEEE
Confidence 34556665556655554332 22 3333577899999999999999999888765331 145777
Q ss_pred EecccCCChHHHHHHHHHH
Q 003175 528 VNGLKLASPENIYRVIYEA 546 (842)
Q Consensus 528 in~~~~~s~~~~~~~i~~~ 546 (842)
++... +..++...+...
T Consensus 65 iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 65 ISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred EEccc--CHHHHHHHHHHH
Confidence 76543 333444444333
No 378
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.0036 Score=62.78 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=29.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEe
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVN 529 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in 529 (842)
-.+.||.||||+||||+++.+++-+.... . .....+++-|+
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~-~-~~l~kkv~IiD 177 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGI-N-QFLPKKVGIID 177 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccc-c-ccCCceEEEEe
Confidence 35689999999999999999999887432 1 22234555555
No 379
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.99 E-value=0.0046 Score=68.48 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=41.1
Q ss_pred cccHHHHHHHhccc-----------cCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHH
Q 003175 442 KQTELERAKATLLL-----------ATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 442 ~~~~~~~~~~~L~~-----------~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~ 510 (842)
+...+..+++.+.. .+-|..+- ....+..|.+.+. .+.. +.++++.||+|||||+++.++...
T Consensus 159 Dl~~~~~~R~~FT~dEWid~LlrSiG~~P~~~~-~r~k~~~L~rl~~-fve~----~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 159 DLDYYKEGRKEFTLEEWIDVLIRSIGYEPEGFE-ARQKLLLLARLLP-LVEP----NYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CHHHHHHHHhhcCHHHHHHHHHHhcCCCcccCC-hHHHHHHHHhhHH-HHhc----CCcEEEECCCCCCHHHHHHHHhHH
Confidence 35556666666553 45677665 3444444544422 2222 578999999999999999988776
No 380
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.95 E-value=0.0062 Score=63.34 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=33.5
Q ss_pred ccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHH
Q 003175 485 CLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVI 543 (842)
Q Consensus 485 ~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i 543 (842)
+.+..++|+|++|+|||+++..++..+... + ...+|+.... ++.++...+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g----~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN---G----YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC---C----CcEEEEeCCC--CHHHHHHHH
Confidence 347889999999999999986666655322 1 3478887443 344555444
No 381
>PRK14974 cell division protein FtsY; Provisional
Probab=96.94 E-value=0.0074 Score=66.00 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCC
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLA 534 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~ 534 (842)
+..++|+|++|+||||++..++..+.... ..++.+++..+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g-------~~V~li~~Dt~R 180 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNG-------FSVVIAAGDTFR 180 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcC-------CeEEEecCCcCc
Confidence 56889999999999999999998886431 446667766544
No 382
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.93 E-value=0.0025 Score=59.60 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+++|+|++|+|||+++..++..+...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc
Confidence 57899999999999999888887743
No 383
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.92 E-value=0.0009 Score=61.89 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.|+|.|+||+||||+++.+++.++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 378999999999999999999885
No 384
>PRK08118 topology modulation protein; Reviewed
Probab=96.92 E-value=0.0014 Score=64.54 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=22.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
-|+|+|+||+||||+++.+++.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999886
No 385
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.91 E-value=0.0068 Score=57.99 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS 535 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s 535 (842)
|..+.|+||+|+||+++.+.++.-..-. .-.++..|..+.+
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Lisp~--------~G~l~f~Ge~vs~ 69 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLISPT--------SGTLLFEGEDVST 69 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhccCCC--------CceEEEcCccccc
Confidence 6789999999999999999999876532 2356666666554
No 386
>PRK10867 signal recognition particle protein; Provisional
Probab=96.91 E-value=0.19 Score=56.92 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=32.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS 535 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s 535 (842)
+..++|+|++|+||||++..++..+..... ..+..|+|..+..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G------~kV~lV~~D~~R~ 142 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKK------KKVLLVAADVYRP 142 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcC------CcEEEEEccccch
Confidence 567899999999999999999998875411 3466777766554
No 387
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=96.89 E-value=0.04 Score=60.59 Aligned_cols=220 Identities=14% Similarity=0.214 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHhhcCC-------------cccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 466 NKEMEDITAFIKGATCDD-------------QCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 466 e~e~~~l~~~l~~~i~~~-------------~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
.+-+++|.+|++...... ...+.++++.|+.=+.=..+...+...|.... ...++.++...
T Consensus 55 ~~~f~~l~~Fi~~~~~~~~~~~~~~~~~~~~~~IPtA~lltGvN~~dh~~~F~~L~~~L~~~~------~~~vv~L~S~d 128 (330)
T PF07034_consen 55 SKLFDDLVDFIRNSHSSDESSARDWASQMNSREIPTALLLTGVNIPDHDLLFEQLSERLQSSV------GPYVVRLNSKD 128 (330)
T ss_pred HHHHHHHHHHHHhhcCccccccccccccccccccchHHHHhCCCCccHHHHHHHHHHHHHhCC------CcEEEEEeccc
Confidence 456778888888765442 12456788888888877788888888877531 25689999888
Q ss_pred CCChHHHHHHHHHHHhCCCCCHH--------------HHHHHHHHHhhc----------ccCC--CCCCCCcEEEEEecC
Q 003175 533 LASPENIYRVIYEALSGHRVSWK--------------KALHSLNERFLD----------GKKI--GKEDDRPCILLIDEL 586 (842)
Q Consensus 533 ~~s~~~~~~~i~~~l~g~~~~~~--------------~~~~~L~~~f~~----------~~~~--~~~~~~~~IlilDEi 586 (842)
..+-+.+.+.|..++.+...... -.+..|...+.. .... ......++||+|.++
T Consensus 129 c~~lk~~lk~iv~ql~~~~~~~~~~~~~~~~~~~~~~yd~~~L~~wy~~~~~~~~~~~~~~~~~~~~~~~~~lVIi~eD~ 208 (330)
T PF07034_consen 129 CSNLKSALKSIVRQLMSDKSDVDEDEEEEEKGQRRLNYDMDILAAWYQNNTKKNDSPSKQKNFSSSRDKSPPLVIIFEDF 208 (330)
T ss_pred chHHHHHHHHHHHHHHhcccccccccchhhcccCcCCCCHHHHHHHHHhhhccccchhhhcccccccccCCCEEEEEccc
Confidence 88888888888877764322111 134556666651 1111 112346899999999
Q ss_pred cccccCChHHHHHhhcCCCCCCCcE-EEEEEeCCCCCccc-cchhhhccCCceeEEecCCC-HHHHHHHHHHHhcCc--c
Q 003175 587 DLLVTRNQSVLYNILDWPTKPNSKL-IVIGIANTMDLPEK-LLPRISSRMGVQRLCFGPYN-HQQLQEIISSRLKGI--E 661 (842)
Q Consensus 587 d~L~~~~~~~L~~ll~~~~~~~~~v-ivI~~tn~~dl~~~-l~~~l~sR~~~~~i~f~p~~-~~e~~~Il~~~l~~~--~ 661 (842)
+.+...-.+.|..++.... ..-++ +|+|++...+.... |...+.+++.... |.-.+ ..-+.+|+...+-.. +
T Consensus 209 EsF~~~VL~dlI~ils~~~-~~lP~vli~GiaTs~~~~~~~Lp~~~~~~L~~~~--F~~~~~~~~l~~v~~~~l~~~~~~ 285 (330)
T PF07034_consen 209 ESFDSQVLQDLILILSSYL-DRLPFVLIFGIATSVEAFHSRLPRSTLSLLRIKK--FQLQSSSEILERVLEKVLLSPDFP 285 (330)
T ss_pred ccCCHHHHHHHHHHHHhcc-CCcCEEEEEecCCChHHHHhhCCHHHHhhcCceE--EEeCChHHHHHHHHHHHhcCCCCC
Confidence 9997654444444443221 24455 45577777665554 4457778887644 44444 344556666665432 1
Q ss_pred -cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003175 662 -AFEKQAIEFASRKVAAISGDARRALEICRRAAE 694 (842)
Q Consensus 662 -~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~ 694 (842)
.+.+.++.++..........+...+..++-|.+
T Consensus 286 ~~l~~~~~~~L~~~f~~~~~Sv~~fi~~lk~~~m 319 (330)
T PF07034_consen 286 FKLGPRVLQFLLDRFLDHDFSVDSFISGLKYAYM 319 (330)
T ss_pred ceECHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 567778888877776666777665555555543
No 388
>PLN02674 adenylate kinase
Probab=96.89 E-value=0.0061 Score=63.44 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
...++|.||||+||||+++.+++.++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999988765
No 389
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.88 E-value=0.011 Score=62.00 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=37.0
Q ss_pred HhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHH
Q 003175 478 GATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYR 541 (842)
Q Consensus 478 ~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~ 541 (842)
..+.+|-+.+..++|+|+||+|||+++..++.+.... + -..+|+.... ++.++.+
T Consensus 12 ~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~---g----e~~lyvs~ee--~~~~i~~ 66 (237)
T TIGR03877 12 EILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM---G----EPGIYVALEE--HPVQVRR 66 (237)
T ss_pred HHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc---C----CcEEEEEeeC--CHHHHHH
Confidence 3455666668999999999999999998876654322 1 3467777543 4444444
No 390
>PRK07914 hypothetical protein; Reviewed
Probab=96.87 E-value=0.086 Score=57.80 Aligned_cols=195 Identities=7% Similarity=0.079 Sum_probs=110.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhc-CCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVES-GSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~-~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
.+..+|||.- ..++....+.+...... .+...+.++.+++....- . .+.+..
T Consensus 5 ~~iYll~G~E----~~l~~~~~~~i~~~~~~~~~~~~~n~~~~d~~~~~~-~----~i~~~~------------------ 57 (320)
T PRK07914 5 APLHLVLGDE----ELLVERAVAAVLRSARQRAGTADVPVSRMRAGDVST-Y----ELAELL------------------ 57 (320)
T ss_pred CceEEEEecH----HHHHHHHHHHHHHHHhcCcCCCCCceEEeccccCCH-H----HHHHhc------------------
Confidence 4677899986 46666666666543322 233457788888766432 1 111110
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCC-
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPY- 644 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~- 644 (842)
..++. ....||+|++...+.....+.|...++.+. ...++|| +.+.......+-..+... +...+.|.++
T Consensus 58 --t~plF---~~rRlV~v~~~~~~~~~~~~~l~~~l~~~~--~~t~lil-~~~~~~~~kk~~K~L~k~-g~~~v~~~~~~ 128 (320)
T PRK07914 58 --SPSLF---AEERVVVLEAAAEAGKDAAALILSAAADLP--PGTVLVV-VHSGGGRAKALANQLRKL-GAEVHPCARIT 128 (320)
T ss_pred --CCCCC---CCceEEEEeChHhccHHHHHHHHHHHhCCC--CCeEEEE-EecCCcchhHHHHHHHHC-CCEEEecCCCC
Confidence 00111 245688888876554333345666665432 2233333 332221222222334322 2235788888
Q ss_pred CHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHH
Q 003175 645 NHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVE 723 (842)
Q Consensus 645 ~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~ 723 (842)
+..++...+..+++..+ .+++++++++...+ .||+..+.+-+.+.+. . ....||.++|.
T Consensus 129 ~~~~l~~wi~~~a~~~g~~i~~~A~~~L~~~~---g~dl~~l~~EleKL~~---~--------------~~~~It~e~V~ 188 (320)
T PRK07914 129 KAAERADFVRKEFRSLRVKVDDDTVTALLDAV---GSDLRELASACSQLVA---D--------------TGGAVDAAAVR 188 (320)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---CccHHHHHHHHHHHhc---C--------------CCCCcCHHHHH
Confidence 99999999999999877 79999999977765 5777655444443211 0 12469999998
Q ss_pred HHHHHHhhChHHHH
Q 003175 724 AAIQEMFQAPHIQV 737 (842)
Q Consensus 724 ~A~~~~~~~~~~~~ 737 (842)
+.+.........+.
T Consensus 189 ~~v~~~~~~~vf~L 202 (320)
T PRK07914 189 RYHSGKAEVKGFDI 202 (320)
T ss_pred HHcCCCeechHHHH
Confidence 88765443333333
No 391
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.86 E-value=0.04 Score=62.28 Aligned_cols=167 Identities=16% Similarity=0.190 Sum_probs=99.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHh----hcCCccc--CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 459 PKFLPCRNKEMEDITAFIKGA----TCDDQCL--GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 459 p~~L~gRe~e~~~l~~~l~~~----i~~~~~~--~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
-+++.|.+...+.|.-.|-.. +.+|..+ --+||++|-|.|.|+-|+++|++..... |.-.|..
T Consensus 300 APSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplA-----------I~TTGRG 368 (818)
T KOG0479|consen 300 APSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLA-----------IATTGRG 368 (818)
T ss_pred CcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhccccc-----------ccccCCC
Confidence 356888888888887766443 2222211 2379999999999999999999876532 1111111
Q ss_pred CCChHHHHHHHHHHHhCCCCC------HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC-
Q 003175 533 LASPENIYRVIYEALSGHRVS------WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT- 605 (842)
Q Consensus 533 ~~s~~~~~~~i~~~l~g~~~~------~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~- 605 (842)
-. |..++ .+.....|+ .+.... ....|+.|||+|.+..-..-++..+++...
T Consensus 369 SS--------------GVGLTAAVTtD~eTGERRLE----AGAMVL---ADRGVVCIDEFDKMsDiDRvAIHEVMEQqtV 427 (818)
T KOG0479|consen 369 SS--------------GVGLTAAVTTDQETGERRLE----AGAMVL---ADRGVVCIDEFDKMSDIDRVAIHEVMEQQTV 427 (818)
T ss_pred CC--------------CccceeEEeeccccchhhhh----cCceEE---ccCceEEehhcccccchhHHHHHHHHhcceE
Confidence 00 11000 001112222 111111 133699999999999887788888887542
Q ss_pred ---------CCCCcEEEEEEeCCC----C----Ccc--ccchhhhccCCceeEEecCCCHHHHHHHHHHHh
Q 003175 606 ---------KPNSKLIVIGIANTM----D----LPE--KLLPRISSRMGVQRLCFGPYNHQQLQEIISSRL 657 (842)
Q Consensus 606 ---------~~~~~vivI~~tn~~----d----l~~--~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l 657 (842)
.-+.+..||+++|.. | ..+ .|...++|||....|.+.-.+.+.=..|-.+.|
T Consensus 428 TIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVL 498 (818)
T KOG0479|consen 428 TIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVL 498 (818)
T ss_pred EeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHH
Confidence 236789999999963 1 112 345578899997556666666554444444433
No 392
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.85 E-value=0.0063 Score=63.10 Aligned_cols=108 Identities=19% Similarity=0.113 Sum_probs=60.7
Q ss_pred HhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHH-------HhCC
Q 003175 478 GATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEA-------LSGH 550 (842)
Q Consensus 478 ~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~-------l~g~ 550 (842)
..+.+|-..+..+.|+|+||+|||+++..++........-+. ....++||++....++..+....... +...
T Consensus 10 ~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g-~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i 88 (226)
T cd01393 10 ELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGG-LEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNI 88 (226)
T ss_pred HHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCC-CcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccE
Confidence 344455556788999999999999999998876542210000 12458899887655543333322211 1000
Q ss_pred ----CCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 551 ----RVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 551 ----~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
..+..+....+....... ....+.+||||-+..+..
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~lvVIDsis~l~~ 128 (226)
T cd01393 89 YVARPYNGEQQLEIVEELERIM-----SSGRVDLVVVDSVAALFR 128 (226)
T ss_pred EEEeCCCHHHHHHHHHHHHHHh-----hcCCeeEEEEcCcchhhh
Confidence 012334444444332210 123667999999987753
No 393
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.022 Score=63.46 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=29.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS 535 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s 535 (842)
+..++|.||+|+||||++..++..+.... + ..+..+++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~--G----~~V~Lit~Dt~R~ 265 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHM--G----KSVSLYTTDNYRI 265 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhc--C----CeEEEecccchhh
Confidence 45688999999999999999998664221 1 3455566555443
No 394
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.78 E-value=0.012 Score=62.50 Aligned_cols=44 Identities=23% Similarity=0.129 Sum_probs=31.9
Q ss_pred cCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 481 CDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 481 ~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
.+|-+.+..++|+|+||+|||+++..++...... + -.++|+...
T Consensus 30 ~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~---G----e~vlyis~E 73 (259)
T TIGR03878 30 LGGIPAYSVINITGVSDTGKSLMVEQFAVTQASR---G----NPVLFVTVE 73 (259)
T ss_pred CCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhC---C----CcEEEEEec
Confidence 4555568899999999999999999887765422 1 236666654
No 395
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=96.76 E-value=0.0039 Score=67.35 Aligned_cols=47 Identities=30% Similarity=0.521 Sum_probs=36.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHH
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRV 542 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~ 542 (842)
.|..+||-|.||||||+++-.+++.+..+ ..+.||+.. .++..+|..
T Consensus 9 ~G~TLLIKG~PGTGKTtfaLelL~~l~~~--------~~v~YISTR--Vd~d~vy~~ 55 (484)
T PF07088_consen 9 PGQTLLIKGEPGTGKTTFALELLNSLKDH--------GNVMYISTR--VDQDTVYEM 55 (484)
T ss_pred CCcEEEEecCCCCCceeeehhhHHHHhcc--------CCeEEEEec--cCHHHHHHh
Confidence 38999999999999999999999999865 346788766 444455543
No 396
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.75 E-value=0.0017 Score=66.54 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVM 508 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~ 508 (842)
+..+||||+||+|||++++.+.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 5679999999999999998774
No 397
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.73 E-value=0.002 Score=69.66 Aligned_cols=110 Identities=15% Similarity=0.253 Sum_probs=59.2
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHH----H--hCC-CCCHH---
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEA----L--SGH-RVSWK--- 555 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~----l--~g~-~~~~~--- 555 (842)
+++++||||..|||||+|...+...+..-... .-|+. +.+...+.+. - .|. .....
T Consensus 113 ~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rk------qRvHF--------h~fM~~VH~r~H~~k~~~~~~~~~~a~~~ 178 (467)
T KOG2383|consen 113 PPKGLYLYGSVGCGKTMLMDLFYDALPPIWRK------QRVHF--------HGFMLSVHKRMHELKQEQGAEKPGYAKSW 178 (467)
T ss_pred CCceEEEecccCcchhHHHHHHhhcCCchhhh------hhhhH--------HHHHHHHHHHHHHHHHhccccCccccccc
Confidence 37899999999999999999888665431110 01111 1112222111 0 011 01100
Q ss_pred --HHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCC
Q 003175 556 --KALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTM 620 (842)
Q Consensus 556 --~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~ 620 (842)
+....+.+.+. ....+|.+||++.-.-...-+|..||.... ...|++|+|+|+.
T Consensus 179 ~~Dpl~~vA~eIa---------~ea~lLCFDEfQVTDVADAmiL~rLf~~Lf--~~GvVlvATSNR~ 234 (467)
T KOG2383|consen 179 EIDPLPVVADEIA---------EEAILLCFDEFQVTDVADAMILKRLFEHLF--KNGVVLVATSNRA 234 (467)
T ss_pred cCCccHHHHHHHh---------hhceeeeechhhhhhHHHHHHHHHHHHHHH--hCCeEEEEeCCCC
Confidence 11222222221 134899999998654444455666665432 3378999999984
No 398
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.70 E-value=0.0016 Score=69.06 Aligned_cols=40 Identities=23% Similarity=0.212 Sum_probs=30.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCC
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLA 534 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~ 534 (842)
..+++|.||+|+||||+++.++..+... .--+.+++..+.
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~--------~G~i~~~g~~v~ 150 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG--------ISQLGLRGKKVG 150 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC--------CceEEECCEEee
Confidence 3689999999999999999999888633 123555665544
No 399
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.69 E-value=0.2 Score=56.42 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCC
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLA 534 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~ 534 (842)
+..++|+|++|+||||++..++..+.... ..+.-|++..+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G-------~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKG-------FKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC-------CCEEEEcCcccc
Confidence 46789999999999999999999886431 346666665544
No 400
>PRK04328 hypothetical protein; Provisional
Probab=96.68 E-value=0.018 Score=60.75 Aligned_cols=49 Identities=18% Similarity=0.061 Sum_probs=33.9
Q ss_pred HHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 477 KGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 477 ~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
...+.+|-+.+..++|+|+||+|||+++..++.+.... + -..+|++...
T Consensus 13 D~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~---g----e~~lyis~ee 61 (249)
T PRK04328 13 DEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM---G----EPGVYVALEE 61 (249)
T ss_pred HHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc---C----CcEEEEEeeC
Confidence 33445555568899999999999999998877653222 1 3467777544
No 401
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.67 E-value=0.025 Score=62.34 Aligned_cols=62 Identities=11% Similarity=0.071 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhhcCCc---ccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCC
Q 003175 466 NKEMEDITAFIKGATCDDQ---CLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLA 534 (842)
Q Consensus 466 e~e~~~l~~~l~~~i~~~~---~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~ 534 (842)
+..++.+.+.+...+.... ..++.++|.||+|+||||++..++..+.... ..+..+++..+.
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~G-------kkVglI~aDt~R 281 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKK-------KTVGFITTDHSR 281 (436)
T ss_pred HHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHHHHHHHHcC-------CcEEEEecCCcc
Confidence 3445555555544443211 1246889999999999999999998886331 345556655443
No 402
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.66 E-value=0.012 Score=66.67 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=30.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH-HHhhcCCCCCceEEEEecccC
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR-SEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~-~~~~~~~~~~~~~v~in~~~~ 533 (842)
+..++|.||+|+||||++..++..+. ... ...+..|++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~------g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG------KKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC------CCeEEEEECCcc
Confidence 56889999999999999999988776 221 134666765543
No 403
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.66 E-value=0.4 Score=54.38 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=32.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS 535 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s 535 (842)
+..++++|++|+|||+++..++..+.... ...+..|+|..+..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~------g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQ------GKKVLLVACDLYRP 141 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhC------CCeEEEEeccccch
Confidence 46789999999999999999998875321 14577777776554
No 404
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.66 E-value=0.01 Score=67.97 Aligned_cols=47 Identities=26% Similarity=0.315 Sum_probs=35.3
Q ss_pred hhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 479 ATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 479 ~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
.+.+|-..+..++|+|+||+|||+++..++..+... + -.++|+++..
T Consensus 86 vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~---g----~kvlYvs~EE 132 (454)
T TIGR00416 86 VLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN---Q----MKVLYVSGEE 132 (454)
T ss_pred HhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc---C----CcEEEEECcC
Confidence 344454557889999999999999999998877642 1 2478888764
No 405
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.65 E-value=0.016 Score=62.21 Aligned_cols=62 Identities=11% Similarity=0.041 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhhcCC------cccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 467 KEMEDITAFIKGATCDD------QCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 467 ~e~~~l~~~l~~~i~~~------~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
.....+.+.|...+... ...+..++|+||+|+||||++..++..+...... ..+..|++..+
T Consensus 168 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~-----~~V~li~~D~~ 235 (282)
T TIGR03499 168 DAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGN-----KKVALITTDTY 235 (282)
T ss_pred HHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCC-----CeEEEEECCcc
Confidence 34455666665555311 0125689999999999999999999888643110 33555655443
No 406
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.64 E-value=0.034 Score=58.50 Aligned_cols=184 Identities=22% Similarity=0.212 Sum_probs=101.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCC-CCHHHHHHHHHHHh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHR-VSWKKALHSLNERF 565 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~-~~~~~~~~~L~~~f 565 (842)
+....+||-+|.|||..++.+++... ..+.+......+...+...+.....+.. ....+....+...+
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s~p-----------~~~l~~~~p~~~a~~~i~~i~~~~~~~~~~~~~d~~~~~~~~l 162 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPSNP-----------NALLIEADPSYTALVLILIICAAAFGATDGTINDLTERLMIRL 162 (297)
T ss_pred CceEEEeccccchhHHHHHhhcccCc-----------cceeecCChhhHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 56788999999999999998777643 2344444444444444444444443322 22222222222222
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCC---CCccccchhhhccCCceeE-Ee
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTM---DLPEKLLPRISSRMGVQRL-CF 641 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~---dl~~~l~~~l~sR~~~~~i-~f 641 (842)
.+...+|++||+|.|.....+.|..+.+. .+.-+++||..... +-++.-..++.||.....+ ..
T Consensus 163 ---------~~~~~~iivDEA~~L~~~ale~lr~i~d~---~Gi~~vLvG~prL~~~l~~~~~~~~rl~srv~v~~~~~~ 230 (297)
T COG2842 163 ---------RDTVRLIIVDEADRLPYRALEELRRIHDK---TGIGVVLVGMPRLFKVLRRPEDELSRLYSRVRVGKLLGE 230 (297)
T ss_pred ---------ccCcceeeeehhhccChHHHHHHHHHHHh---hCceEEEecChHHHhccccchHHHHHHHHHhhhHhhhhh
Confidence 13567999999999988777777777662 24445555533211 1111222344454432111 11
Q ss_pred cCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 003175 642 GPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYR 699 (842)
Q Consensus 642 ~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~ 699 (842)
.-.+.+++.+|....+. .+.+..+.. .+....|.+|..-.++..+...|..+
T Consensus 231 ~~~d~d~~~~~~~~~l~---~~~~~~v~~---~~~~~~g~~~~L~~~l~~~~~~a~~~ 282 (297)
T COG2842 231 KFPDADELAEIAALVLP---TEDELVLMQ---VIKETEGNIRRLDKILAGAVGTARSN 282 (297)
T ss_pred hhhhhHHHHHHHHhhCc---cchHHHHHH---HHHhcchhHhHHHHHHhhhhhhhhhc
Confidence 22344566666655554 234433333 33445788888777888777776644
No 407
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.64 E-value=0.01 Score=61.10 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=36.8
Q ss_pred HHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 477 KGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 477 ~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
...+.+|-..+..++|+|+||+|||+++..++.++... ...++|++....
T Consensus 9 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~-------g~~v~yi~~e~~ 58 (218)
T cd01394 9 DELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ-------GKKVAYIDTEGL 58 (218)
T ss_pred HHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEECCCC
Confidence 33444555557889999999999999999999887532 145788876543
No 408
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.63 E-value=0.0041 Score=64.90 Aligned_cols=62 Identities=19% Similarity=0.118 Sum_probs=39.6
Q ss_pred HhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHH
Q 003175 478 GATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIY 540 (842)
Q Consensus 478 ~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~ 540 (842)
..+.++-..+..+.|+|+||+|||+++..++.........+. ....++||++....+...+.
T Consensus 10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g-~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 10 ELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGG-LEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred hhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCC-CCccEEEEeCCCCcCHHHHH
Confidence 344555556788999999999999999998865321110000 11458899887654544433
No 409
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.62 E-value=0.0057 Score=61.84 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=69.2
Q ss_pred HHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCC
Q 003175 473 TAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRV 552 (842)
Q Consensus 473 ~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~ 552 (842)
...+..+...+......++|.|+-|+|||+.++.+...... +.....+.++..
T Consensus 38 ~~~Var~~~pg~k~d~~lvl~G~QG~GKStf~~~L~~~~~~---------------d~~~~~~~kd~~------------ 90 (198)
T PF05272_consen 38 VGAVARAYEPGCKNDTVLVLVGKQGIGKSTFFRKLGPEYFS---------------DSINDFDDKDFL------------ 90 (198)
T ss_pred HHHHHHHhCCCCcCceeeeEecCCcccHHHHHHHHhHHhcc---------------CccccCCCcHHH------------
Confidence 34444444333323457889999999999999987444211 111111111111
Q ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC------------CCCCcEEEEEEeCCC
Q 003175 553 SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT------------KPNSKLIVIGIANTM 620 (842)
Q Consensus 553 ~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~------------~~~~~vivI~~tn~~ 620 (842)
..+. ...|+.|||++.+.....+.|.+++-... .-....+|||+||..
T Consensus 91 ------~~l~--------------~~~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~ 150 (198)
T PF05272_consen 91 ------EQLQ--------------GKWIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDD 150 (198)
T ss_pred ------HHHH--------------HhHheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCc
Confidence 1121 22589999999998777888888874321 113457899999986
Q ss_pred CCccccchhhhccCCceeEEecC
Q 003175 621 DLPEKLLPRISSRMGVQRLCFGP 643 (842)
Q Consensus 621 dl~~~l~~~l~sR~~~~~i~f~p 643 (842)
+++. ++.=.+||-. |.+..
T Consensus 151 ~~L~--D~TGnRRf~~--v~v~~ 169 (198)
T PF05272_consen 151 DFLK--DPTGNRRFWP--VEVSK 169 (198)
T ss_pred ceee--CCCCCeEEEE--EEEcC
Confidence 5421 3344467743 44443
No 410
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.61 E-value=0.023 Score=59.56 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=36.3
Q ss_pred CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHH
Q 003175 483 DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVI 543 (842)
Q Consensus 483 ~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i 543 (842)
|-..|..++|.|+||+|||+++..++..+.... ..++++++... ++..+...+
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~------g~~vly~s~E~--~~~~~~~r~ 61 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQ------GKPVLFFSLEM--SKEQLLQRL 61 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC------CCceEEEeCCC--CHHHHHHHH
Confidence 334577899999999999999998887776431 14577777553 334444433
No 411
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.60 E-value=0.0046 Score=71.57 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=30.1
Q ss_pred CCcEEEEEecCcc-cccCChHHHHHhhcCCCCCCCcEEEEEEeCCC
Q 003175 576 DRPCILLIDELDL-LVTRNQSVLYNILDWPTKPNSKLIVIGIANTM 620 (842)
Q Consensus 576 ~~~~IlilDEid~-L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~ 620 (842)
.+|.++||||+-. |....+..||++++.. -..+.||.++.+.
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~---lp~~tvISV~Hr~ 574 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEE---LPDATVISVGHRP 574 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhh---CCCCEEEEeccch
Confidence 4889999999955 4445678899999731 1347777777764
No 412
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.60 E-value=0.0055 Score=78.50 Aligned_cols=163 Identities=17% Similarity=0.203 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHh
Q 003175 469 MEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALS 548 (842)
Q Consensus 469 ~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~ 548 (842)
++....-+..++..+. -.++|-||.|+|||+++..+++..+ ..++.||-..+++.......-. ...
T Consensus 425 vq~~la~~~~a~~~~~---~pillqG~tssGKtsii~~la~~~g----------~~~vrinnhehtd~qeyig~y~-~~~ 490 (1856)
T KOG1808|consen 425 VQKNLADLARAISSGK---FPILLQGPTSSGKTSIIKELARATG----------KNIVRINNHEHTDLQEYIGTYV-ADD 490 (1856)
T ss_pred HHHHHHHHHHHHhcCC---CCeEEecCcCcCchhHHHHHHHHhc----------cCceehhccccchHHHHHHhhh-cCC
Confidence 3444444444444442 4699999999999999999999988 4589999888877543332111 111
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC-----------CCCCcEEEEEEe
Q 003175 549 GHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT-----------KPNSKLIVIGIA 617 (842)
Q Consensus 549 g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~-----------~~~~~vivI~~t 617 (842)
+....|... .|...+. +...+||||+....+...++|..++++.. .++..+.++++=
T Consensus 491 ~g~l~freg--~LV~Alr----------~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatq 558 (1856)
T KOG1808|consen 491 NGDLVFREG--VLVQALR----------NGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQ 558 (1856)
T ss_pred CCCeeeehh--HHHHHHH----------hCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhc
Confidence 112222221 1222221 45899999999988888899999998721 122334445554
Q ss_pred CCCCCc---cccchhhhccCCceeEEecCCCHHHHHHHHHHHhcC
Q 003175 618 NTMDLP---EKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKG 659 (842)
Q Consensus 618 n~~dl~---~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~ 659 (842)
|..... ..+...+.+||. .++|--...+++..|+..+-..
T Consensus 559 n~~~~y~grk~lsRa~~~rf~--e~~f~~~~e~e~~~i~~~~~~i 601 (1856)
T KOG1808|consen 559 NPPGTYGGRKILSRALRNRFI--ELHFDDIGEEELEEILEHRCGI 601 (1856)
T ss_pred cCccccchhhhhhhcccccch--hhhhhhcCchhhhhhhcccccC
Confidence 443221 223456667774 4888888889999999888654
No 413
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.59 E-value=0.007 Score=75.21 Aligned_cols=110 Identities=21% Similarity=0.325 Sum_probs=60.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
.+..+|.|++|||||++++.+...+.... +.++-+ ..+. ..-..|.+. .|... ..+..+.-.+.
T Consensus 397 ~r~~~v~G~AGTGKTt~l~~~~~~~e~~G-------~~V~g~---ApTg--kAA~~L~e~-~Gi~a---~TIas~ll~~~ 460 (1102)
T PRK13826 397 ARIAAVVGRAGAGKTTMMKAAREAWEAAG-------YRVVGG---ALAG--KAAEGLEKE-AGIQS---RTLSSWELRWN 460 (1102)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcC-------CeEEEE---cCcH--HHHHHHHHh-hCCCe---eeHHHHHhhhc
Confidence 46789999999999999999887665321 333322 2121 112223222 23221 11111111111
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIAN 618 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn 618 (842)
... ..-....||||||+-.+.. ..|+.|++.....+.+|++||=.+
T Consensus 461 ~~~---~~l~~~~vlVIDEAsMv~~---~~m~~Ll~~~~~~garvVLVGD~~ 506 (1102)
T PRK13826 461 QGR---DQLDNKTVFVLDEAGMVAS---RQMALFVEAVTRAGAKLVLVGDPE 506 (1102)
T ss_pred cCc---cCCCCCcEEEEECcccCCH---HHHHHHHHHHHhcCCEEEEECCHH
Confidence 111 1113457999999998854 445555554444578899988444
No 414
>PF13245 AAA_19: Part of AAA domain
Probab=96.58 E-value=0.0026 Score=53.57 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
++.++|.||||||||+++...+..+-
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35567799999999966666666555
No 415
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.57 E-value=0.0054 Score=66.30 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=48.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+.+.|.++.+++|..+++.+..+.....+.+||.||+|+|||++++.+.+.+..
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 358899999999999999999886656789999999999999999999988874
No 416
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.55 E-value=0.05 Score=67.18 Aligned_cols=197 Identities=18% Similarity=0.203 Sum_probs=118.5
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHH
Q 003175 463 PCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRV 542 (842)
Q Consensus 463 ~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~ 542 (842)
+|++.-++.+...|.. .+ ...+-|+|..|+|||||++.+.+....-. ..-..+..|.++ ...+...+...
T Consensus 161 VG~e~~~~kl~~~L~~---d~---~~iv~i~GMGGvGKTTL~~qi~N~~~~v~--~~Fd~~iWV~VS--k~f~~~~iq~~ 230 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLME---DD---VGIVGIYGMGGVGKTTLARQIFNKFDEVG--NHFDGVIWVVVS--KEFTTRKIQQT 230 (889)
T ss_pred ccHHHHHHHHHHHhcc---CC---CCEEEEECCCcccHHHHHHHHhcccchhc--ccCceEEEEEEc--ccccHHhHHHH
Confidence 7888888887777654 22 36788999999999999999998876311 111113344444 34566677777
Q ss_pred HHHHHhCCCCCHH-----HHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC---CCCcEEEE
Q 003175 543 IYEALSGHRVSWK-----KALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK---PNSKLIVI 614 (842)
Q Consensus 543 i~~~l~g~~~~~~-----~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~---~~~~vivI 614 (842)
|...+.-....+. +....|.+++. .+..+||+|+|-. .+....+..+.- .+++|+|
T Consensus 231 Il~~l~~~~~~~~~~~~~~~~~~i~~~L~---------~krfllvLDDIW~------~~dw~~I~~~~p~~~~g~Kvvl- 294 (889)
T KOG4658|consen 231 ILERLGLLDEEWEDKEEDELASKLLNLLE---------GKRFLLVLDDIWE------EVDWDKIGVPFPSRENGSKVVL- 294 (889)
T ss_pred HHHHhccCCcccchhhHHHHHHHHHHHhc---------cCceEEEEecccc------cccHHhcCCCCCCccCCeEEEE-
Confidence 7776643233322 22233444443 3568999999853 222333333321 2244444
Q ss_pred EEeCCCCCccccchhhhcc-CCc-eeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 003175 615 GIANTMDLPEKLLPRISSR-MGV-QRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICRRA 692 (842)
Q Consensus 615 ~~tn~~dl~~~l~~~l~sR-~~~-~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A 692 (842)
||...+. ..+ ++. ..+...-++.++.-+.++..+.....-+...++.+++.++...|.+--|+.++-.+
T Consensus 295 -TTRs~~V--------~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ 365 (889)
T KOG4658|consen 295 -TTRSEEV--------CGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGL 365 (889)
T ss_pred -EeccHhh--------hhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 7765322 222 221 34667778889999988888754422222237888888888888887787777655
Q ss_pred HH
Q 003175 693 AE 694 (842)
Q Consensus 693 ~~ 694 (842)
..
T Consensus 366 ma 367 (889)
T KOG4658|consen 366 LA 367 (889)
T ss_pred hc
Confidence 43
No 417
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.53 E-value=0.014 Score=60.52 Aligned_cols=97 Identities=21% Similarity=0.229 Sum_probs=55.8
Q ss_pred HHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHH-------Hh-
Q 003175 477 KGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEA-------LS- 548 (842)
Q Consensus 477 ~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~-------l~- 548 (842)
...+.+|-+.+..++|.|+||+|||+++..++...-.... -.++|+.... ++..+.+.+... ..
T Consensus 9 D~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~g------e~vlyvs~ee--~~~~l~~~~~s~g~d~~~~~~~ 80 (226)
T PF06745_consen 9 DELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFG------EKVLYVSFEE--PPEELIENMKSFGWDLEEYEDS 80 (226)
T ss_dssp HHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--------EEEEESSS---HHHHHHHHHTTTS-HHHHHHT
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcC------CcEEEEEecC--CHHHHHHHHHHcCCcHHHHhhc
Confidence 3445566667899999999999999999877654432211 2377777532 333444332211 00
Q ss_pred CC--------------CCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccc
Q 003175 549 GH--------------RVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLL 589 (842)
Q Consensus 549 g~--------------~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L 589 (842)
|. ..........|.+.+... ++.+++||-+..|
T Consensus 81 g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~--------~~~~vVIDsls~l 127 (226)
T PF06745_consen 81 GKLKIIDAFPERIGWSPNDLEELLSKIREAIEEL--------KPDRVVIDSLSAL 127 (226)
T ss_dssp TSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHH--------TSSEEEEETHHHH
T ss_pred CCEEEEecccccccccccCHHHHHHHHHHHHHhc--------CCCEEEEECHHHH
Confidence 00 012333444555544432 3479999999999
No 418
>PRK05973 replicative DNA helicase; Provisional
Probab=96.52 E-value=0.02 Score=59.32 Aligned_cols=53 Identities=17% Similarity=0.118 Sum_probs=35.9
Q ss_pred cCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHH
Q 003175 481 CDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRV 542 (842)
Q Consensus 481 ~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~ 542 (842)
.+|-..+..++|.|+||+|||+++..++...... + ..++|++... ++.++...
T Consensus 58 ~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---G----e~vlyfSlEe--s~~~i~~R 110 (237)
T PRK05973 58 FSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---G----RTGVFFTLEY--TEQDVRDR 110 (237)
T ss_pred cCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---C----CeEEEEEEeC--CHHHHHHH
Confidence 3444457889999999999999999888776532 1 3467776543 34444443
No 419
>PRK07261 topology modulation protein; Provisional
Probab=96.48 E-value=0.0057 Score=60.48 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
-++|+|++|+||||+++.++..++
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999987764
No 420
>PRK14532 adenylate kinase; Provisional
Probab=96.45 E-value=0.0087 Score=60.15 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.++|.|+||+||||+++.+++.++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998765
No 421
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.45 E-value=0.0054 Score=65.56 Aligned_cols=51 Identities=25% Similarity=0.348 Sum_probs=39.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+.|.-.....+.+.++|...+.. +++++|+|++|+|||+++++++..+...
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~----~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRG----RGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHT----TEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred hhccCchhhHHHHHHHHhhcccc----ceEEEEECCCccccchHHHHHhhhcccc
Confidence 34444444556777788776654 5789999999999999999999988754
No 422
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.43 E-value=0.0051 Score=57.70 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 466 NKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 466 e~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+++..++...|...+.. +..++|.|+.|+|||++++.+++.++
T Consensus 5 ~~~t~~l~~~l~~~l~~----~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 5 EKAMDKFGKAFAKPLDF----GTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHHhCCC----CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46677777888776643 57899999999999999999999986
No 423
>PRK13808 adenylate kinase; Provisional
Probab=96.41 E-value=0.01 Score=64.34 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.|+|+||||+|||++++.+++.++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~yg 25 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYG 25 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999988765
No 424
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.41 E-value=0.026 Score=61.51 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 471 DITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 471 ~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
++..+|...+.. +.+++|+|++|+|||+++++++..+..
T Consensus 132 ~~~~~l~~~v~~----~~~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 132 DIKEFLRLAIAS----RKNIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred HHHHHHHHHhhC----CCEEEEECCCCCCHHHHHHHHHccCCc
Confidence 355667666654 478999999999999999999987753
No 425
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.36 E-value=0.003 Score=65.45 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=19.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l 511 (842)
..+|.||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 48899999999999888888887
No 426
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.32 E-value=0.059 Score=55.93 Aligned_cols=46 Identities=24% Similarity=0.175 Sum_probs=32.5
Q ss_pred hhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 479 ATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 479 ~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
.+.+|-..+..++|+|+||+|||+++..++...... + -.+++++..
T Consensus 12 ~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g----~~~~~is~e 57 (229)
T TIGR03881 12 LLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD---G----DPVIYVTTE 57 (229)
T ss_pred hhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc---C----CeEEEEEcc
Confidence 334444457899999999999999999887654322 1 346777764
No 427
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.30 E-value=0.016 Score=57.81 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=20.1
Q ss_pred CcEEEEEecCccccc-CChHHHHHhhcCC
Q 003175 577 RPCILLIDELDLLVT-RNQSVLYNILDWP 604 (842)
Q Consensus 577 ~~~IlilDEid~L~~-~~~~~L~~ll~~~ 604 (842)
...+|||||+|.+.. .....+..++...
T Consensus 129 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 129 NVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred HCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 345899999999987 5556666666543
No 428
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.28 E-value=0.013 Score=60.07 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
|..+-|.||+|||||||++.++.-...
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 678899999999999999999876653
No 429
>PRK14709 hypothetical protein; Provisional
Probab=96.27 E-value=0.2 Score=57.62 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=37.5
Q ss_pred CcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 464 CRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 464 gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+-++.+.-|.+++.-++.+.......++++|+-|.|||++++.+..-++.
T Consensus 182 gD~e~~~~lq~~lGy~L~g~~~~q~~~~l~G~G~NGKSt~~~~i~~llG~ 231 (469)
T PRK14709 182 GDDELIRFLQQWCGYCLTGDTREHALVFVFGGGGNGKSVFLNVLAGILGD 231 (469)
T ss_pred CCHHHHHHHHHHhhHhhcCCCccceEEEEECCCCCcHHHHHHHHHHHHhh
Confidence 44455666777777777765433456778999999999999988888874
No 430
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.26 E-value=0.017 Score=60.86 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=22.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHH
Q 003175 490 LYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 490 ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
|+|+|.||+||||+++.+++.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998864
No 431
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.21 E-value=0.025 Score=61.44 Aligned_cols=108 Identities=14% Similarity=0.062 Sum_probs=61.1
Q ss_pred HHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCC----
Q 003175 476 IKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHR---- 551 (842)
Q Consensus 476 l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~---- 551 (842)
|...+.+|-..+..+.|+|+||+|||+++..++-...-....+ ...-.++||+...-.++..+.+. .+.+ |..
T Consensus 85 LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~g-g~~~~vvYIdtE~~f~~eRi~~~-a~~~-g~d~~~~ 161 (313)
T TIGR02238 85 LDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMG-GGNGKVAYIDTEGTFRPDRIRAI-AERF-GVDPDAV 161 (313)
T ss_pred HHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhc-CCCCeEEEEEcCCCCCHHHHHHH-HHHc-CCChHHh
Confidence 3445556665678889999999999999987764332111001 11246899998876566555443 2222 111
Q ss_pred ---------CCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 552 ---------VSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 552 ---------~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
.+..+..+.+....... ......+||||-+..+..
T Consensus 162 l~~i~~~~~~~~e~~~~~l~~l~~~i-----~~~~~~LvVIDSisal~r 205 (313)
T TIGR02238 162 LDNILYARAYTSEHQMELLDYLAAKF-----SEEPFRLLIVDSIMALFR 205 (313)
T ss_pred cCcEEEecCCCHHHHHHHHHHHHHHh-----hccCCCEEEEEcchHhhh
Confidence 12333333333321111 112567999999987654
No 432
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.19 E-value=0.026 Score=62.07 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=34.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCCh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASP 536 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~ 536 (842)
++.+.|.||.|+||||++-.+|....-. .....+.+|.+++..+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~---~~~~kVaiITtDtYRIGA~ 249 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML---KKKKKVAIITTDTYRIGAV 249 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh---ccCcceEEEEeccchhhHH
Confidence 6889999999999999888888777621 1223366777777665543
No 433
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.19 E-value=0.014 Score=72.42 Aligned_cols=73 Identities=11% Similarity=0.185 Sum_probs=47.5
Q ss_pred cEEEEEecCcccccCCh----HHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHH
Q 003175 578 PCILLIDELDLLVTRNQ----SVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEII 653 (842)
Q Consensus 578 ~~IlilDEid~L~~~~~----~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il 653 (842)
.+||||||+..|..... +.|..|.... ....|.||.+|.+++. +.+...|++-|. .+|.|.--+..+-..||
T Consensus 1141 ~IVVIIDE~AdLm~~~~kevE~lI~rLAqkG--RAaGIHLILATQRPsv-DVItg~IKAN~p-tRIAfrVsS~~DSrtIL 1216 (1355)
T PRK10263 1141 YIVVLVDEFADLMMTVGKKVEELIARLAQKA--RAAGIHLVLATQRPSV-DVITGLIKANIP-TRIAFTVSSKIDSRTIL 1216 (1355)
T ss_pred eEEEEEcChHHHHhhhhHHHHHHHHHHHHHh--hhcCeEEEEEecCccc-ccchHHHHhhcc-ceEEEEcCCHHHHHHhc
Confidence 47999999977754321 2344444322 2345777778888642 345556777777 58889888888877777
Q ss_pred H
Q 003175 654 S 654 (842)
Q Consensus 654 ~ 654 (842)
-
T Consensus 1217 d 1217 (1355)
T PRK10263 1217 D 1217 (1355)
T ss_pred C
Confidence 4
No 434
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.18 E-value=0.0041 Score=63.86 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=20.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMR 509 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~ 509 (842)
+.++|+||.|+|||++++.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7799999999999999999984
No 435
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.15 E-value=0.025 Score=65.58 Aligned_cols=47 Identities=15% Similarity=0.079 Sum_probs=35.4
Q ss_pred hhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 479 ATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 479 ~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
.+.+|-..+..++|.|+||+|||+++..++...... + -+.+|+...+
T Consensus 255 ~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~---g----e~~~y~s~eE 301 (484)
T TIGR02655 255 MCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN---K----ERAILFAYEE 301 (484)
T ss_pred HhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC---C----CeEEEEEeeC
Confidence 455555568899999999999999999988877542 1 2477877654
No 436
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.12 E-value=0.034 Score=55.99 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 003175 490 LYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 490 ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|+|+|+||+|||++++.+++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999988865
No 437
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.12 E-value=0.048 Score=71.10 Aligned_cols=115 Identities=18% Similarity=0.205 Sum_probs=59.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHH-HHHH--
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALH-SLNE-- 563 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~-~L~~-- 563 (842)
.+.++|.|.+|||||++++.+...+....... ...++-+ +. +. ..-..|.+ .|.. ...+. .|..
T Consensus 984 dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~---~~~V~gl-AP--Tg--rAAk~L~e--~Gi~---A~TI~s~L~~~~ 1050 (1747)
T PRK13709 984 DRFTVVQGYAGVGKTTQFRAVMSAVNTLPESE---RPRVVGL-GP--TH--RAVGEMRS--AGVD---AQTLASFLHDTQ 1050 (1747)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhhccc---CceEEEE-CC--cH--HHHHHHHh--cCcc---hhhHHHHhcccc
Confidence 46889999999999999999988875321111 1223322 11 11 11222322 2321 11111 1111
Q ss_pred HhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 564 RFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 564 ~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
.+..... .......||||||+-.+... .++.|++.....+.+++|||=.+.
T Consensus 1051 ~~~~~~~--~~~~~~~llIVDEaSMv~~~---~m~~Ll~~~~~~garvVLVGD~~Q 1101 (1747)
T PRK13709 1051 LQQRSGE--TPDFSNTLFLLDESSMVGNT---DMARAYALIAAGGGRAVSSGDTDQ 1101 (1747)
T ss_pred ccccccc--CCCCCCcEEEEEccccccHH---HHHHHHHhhhcCCCEEEEecchHh
Confidence 0100000 01123479999999998654 455555544344678999885443
No 438
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.11 E-value=0.0049 Score=60.83 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|+|+||+|||++++.+++.++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999999986
No 439
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.008 Score=61.26 Aligned_cols=45 Identities=20% Similarity=0.238 Sum_probs=30.8
Q ss_pred CCcEEEEEecCccccc-CChHHHHHhhcCCCCCCCcEEEEEEeCCCC
Q 003175 576 DRPCILLIDELDLLVT-RNQSVLYNILDWPTKPNSKLIVIGIANTMD 621 (842)
Q Consensus 576 ~~~~IlilDEid~L~~-~~~~~L~~ll~~~~~~~~~vivI~~tn~~d 621 (842)
-.|.+||+||.-.... ..|..++++|.... ....+.+|.+|.++.
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL~~l~-~~~~lt~l~IsHdl~ 203 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLLLELK-KERGLTYLFISHDLA 203 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHHHHHH-HhcCceEEEEeCcHH
Confidence 4788999999866544 34767777775432 355678888888743
No 440
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.10 E-value=0.0062 Score=61.83 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=23.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+.++|+||+|+||||++++++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 46899999999999999999988864
No 441
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.09 E-value=0.038 Score=60.65 Aligned_cols=66 Identities=12% Similarity=0.005 Sum_probs=43.4
Q ss_pred HHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHH
Q 003175 476 IKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRV 542 (842)
Q Consensus 476 l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~ 542 (842)
|...+.+|-..+....|+|+||||||+++..++-........+. ..-.++||+...-.++..+.+.
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg-~~~~vvyIdTE~tF~peRl~~i 180 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGG-GNGKVAYIDTEGTFRPDRIVPI 180 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCC-CCceEEEEEcCCCCCHHHHHHH
Confidence 44455666556788889999999999999887654332111111 1246899998776666665554
No 442
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=96.08 E-value=0.56 Score=51.76 Aligned_cols=141 Identities=14% Similarity=0.232 Sum_probs=90.2
Q ss_pred EEEEEecCcccccCC-hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHh
Q 003175 579 CILLIDELDLLVTRN-QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRL 657 (842)
Q Consensus 579 ~IlilDEid~L~~~~-~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l 657 (842)
.+++|...+...... ...+..+...... ..++++..++..+-...+...+..--....+.+.+++..++.+.+..++
T Consensus 76 ~~v~l~~~~~~~~~~~~~~l~~~~~~~p~--~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 153 (334)
T COG1466 76 RLVVLKNAEKKPNKDKNLALLELAALLPS--TDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKKRA 153 (334)
T ss_pred eeEEEECCCCCcCchhHHHHHHHHcCCCC--CCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHHHHH
Confidence 577777777765332 3344444433221 5566666665543333332222211001368899999999999999999
Q ss_pred cCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHH
Q 003175 658 KGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQ 736 (842)
Q Consensus 658 ~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~ 736 (842)
...+ .++++++++++..+ .||.+.+.+-+.....++. +. .|+.++|..++.........+
T Consensus 154 ~~~~l~i~~~a~~~L~~~~---~~nl~~i~~Ei~KL~l~~~---------------~~-~I~~~~V~~~v~~~~~~~~f~ 214 (334)
T COG1466 154 KELGLKIDQEAIQLLLEAL---GGNLLAIAQEIEKLALYAG---------------DK-EITLEDVEEVVSDVAEFNIFD 214 (334)
T ss_pred HHcCCCCCHHHHHHHHHHh---CCcHHHHHHHHHHHHHhCC---------------CC-cCCHHHHHHHHhccccCCHHH
Confidence 8877 79999999987765 6888876555555555432 23 899999999998776655444
Q ss_pred HHhh
Q 003175 737 VMKS 740 (842)
Q Consensus 737 ~l~~ 740 (842)
.+..
T Consensus 215 l~da 218 (334)
T COG1466 215 LADA 218 (334)
T ss_pred HHHH
Confidence 4433
No 443
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.08 E-value=0.011 Score=58.37 Aligned_cols=112 Identities=14% Similarity=0.154 Sum_probs=59.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHH--HHHHHHHHHhh
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWK--KALHSLNERFL 566 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~--~~~~~L~~~f~ 566 (842)
.++|+|+||+|||+++..++..++ ..++|+...... +.+....|..........|. +....|.+.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~----------~~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~ 71 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG----------LQVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLR 71 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC----------CCcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHH
Confidence 589999999999999999987754 235677655533 33444444332221111111 11112222222
Q ss_pred cccCCCCCCCCcEEEEEecCcccccC----C-----hHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTR----N-----QSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~----~-----~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
.. .....+|+||-+..+... . ...+..++++....+..++| ++|.
T Consensus 72 ~~------~~~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVl--Vs~E 125 (170)
T PRK05800 72 AD------AAPGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIIL--VTNE 125 (170)
T ss_pred hh------cCCCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEE--EEcC
Confidence 11 013458999998877531 1 12344555554334445555 4565
No 444
>PRK06696 uridine kinase; Validated
Probab=96.07 E-value=0.015 Score=60.28 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC
Q 003175 464 CRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS 535 (842)
Q Consensus 464 gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s 535 (842)
.|.+.+++|.+.+.... .+. +..|.|.|++|+||||+++.++..|.... ..++.+....+..
T Consensus 2 ~~~~~~~~la~~~~~~~-~~~--~~iI~I~G~sgsGKSTlA~~L~~~l~~~g-------~~v~~~~~Ddf~~ 63 (223)
T PRK06696 2 SRKQLIKELAEHILTLN-LTR--PLRVAIDGITASGKTTFADELAEEIKKRG-------RPVIRASIDDFHN 63 (223)
T ss_pred cHHHHHHHHHHHHHHhC-CCC--ceEEEEECCCCCCHHHHHHHHHHHHHHcC-------CeEEEeccccccC
Confidence 36677777777776532 222 56788999999999999999999997431 3456655554443
No 445
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.04 E-value=0.015 Score=60.60 Aligned_cols=116 Identities=17% Similarity=0.156 Sum_probs=65.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC--hHHHHHHHHHHHh--CCC----------C
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS--PENIYRVIYEALS--GHR----------V 552 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s--~~~~~~~i~~~l~--g~~----------~ 552 (842)
|..+-|.|.+|+||||+++.++.-+... .--|++++..+.. .......+.+.+. |.. .
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt--------~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhel 110 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT--------SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHEL 110 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC--------CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCccc
Confidence 6788899999999999999998876532 2256677665433 2222233333332 211 1
Q ss_pred CHHHH-HHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC-ChHHHHHhhcCCCCCCCcEEEEEEeCCC
Q 003175 553 SWKKA-LHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR-NQSVLYNILDWPTKPNSKLIVIGIANTM 620 (842)
Q Consensus 553 ~~~~~-~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~-~~~~L~~ll~~~~~~~~~vivI~~tn~~ 620 (842)
+..+. .-.+...+. -+|.+|+.||.-..... .|..+.+||.... ....+..+.++.++
T Consensus 111 SGGQrQRi~IARALa---------l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL 170 (268)
T COG4608 111 SGGQRQRIGIARALA---------LNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDL 170 (268)
T ss_pred CchhhhhHHHHHHHh---------hCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEH
Confidence 11111 111111111 27899999999887654 3556666664332 23345666677664
No 446
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.032 Score=63.92 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+..+.|+||+|+|||+++..++..+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999987754
No 447
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.02 E-value=0.051 Score=69.99 Aligned_cols=114 Identities=20% Similarity=0.290 Sum_probs=59.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
.+.++|.|.+|||||++++.++..+....... ...++-+ +. +. ..-..|.+ .|.. ...+ ...+.
T Consensus 852 dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~---g~~V~gl-AP--Tg--kAa~~L~e--~Gi~---A~TI---asfL~ 915 (1623)
T PRK14712 852 DRFTVVQGYAGVGKTTQFRAVMSAVNMLPESE---RPRVVGL-GP--TH--RAVGEMRS--AGVD---AQTL---ASFLH 915 (1623)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHHhhcc---CceEEEE-ec--hH--HHHHHHHH--hCch---HhhH---HHHhc
Confidence 46789999999999999999887765321111 1223222 11 11 11223322 1321 1111 11111
Q ss_pred ccc---CCCC-CCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 567 DGK---KIGK-EDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 567 ~~~---~~~~-~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
... .... ......||||||+-.+.......|+.++. ..+.+++|||=.+.
T Consensus 916 ~~~~~~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~---~~garvVLVGD~~Q 969 (1623)
T PRK14712 916 DTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIA---AGGGRAVASGDTDQ 969 (1623)
T ss_pred cccchhhcccCCCCCCcEEEEEccccccHHHHHHHHHhhh---hCCCEEEEEcchhh
Confidence 100 0000 01235799999999987644444444443 34678999884443
No 448
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.01 E-value=0.043 Score=55.50 Aligned_cols=139 Identities=16% Similarity=0.217 Sum_probs=68.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCC-------CHHHHH-H
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRV-------SWKKAL-H 559 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~-------~~~~~~-~ 559 (842)
+.++|+||+|+||||++-.++..+... . ..+.++.++........ -.+...+.+ |... ...+.. +
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~----~~v~lis~D~~R~ga~e-QL~~~a~~l-~vp~~~~~~~~~~~~~~~~ 74 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-G----KKVALISADTYRIGAVE-QLKTYAEIL-GVPFYVARTESDPAEIARE 74 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T------EEEEEESTSSTHHHH-HHHHHHHHH-TEEEEESSTTSCHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-c----ccceeecCCCCCccHHH-HHHHHHHHh-ccccchhhcchhhHHHHHH
Confidence 568999999999999999999988755 1 12445555444322221 122233333 3211 122222 2
Q ss_pred HHHHHhhcccCCCCCCCCcEEEEEecCcccccCC--hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccc--hhhhccCC
Q 003175 560 SLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN--QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLL--PRISSRMG 635 (842)
Q Consensus 560 ~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~--~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~--~~l~sR~~ 635 (842)
.+++ +.. +..-+||||=........ ...|.++++.. ....+.+|..++.- .+.+. ..+.+.+.
T Consensus 75 ~l~~-~~~--------~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~ 141 (196)
T PF00448_consen 75 ALEK-FRK--------KGYDLVLIDTAGRSPRDEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEAFG 141 (196)
T ss_dssp HHHH-HHH--------TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHHSS
T ss_pred HHHH-Hhh--------cCCCEEEEecCCcchhhHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhccc
Confidence 2222 211 134689999876654321 23344444432 23455555554431 12222 12333444
Q ss_pred ceeEEecCCCH
Q 003175 636 VQRLCFGPYNH 646 (842)
Q Consensus 636 ~~~i~f~p~~~ 646 (842)
...+.|-.+|.
T Consensus 142 ~~~lIlTKlDe 152 (196)
T PF00448_consen 142 IDGLILTKLDE 152 (196)
T ss_dssp TCEEEEESTTS
T ss_pred CceEEEEeecC
Confidence 45566766655
No 449
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.99 E-value=0.093 Score=52.56 Aligned_cols=145 Identities=19% Similarity=0.220 Sum_probs=77.8
Q ss_pred HHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHH--------HH
Q 003175 476 IKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYE--------AL 547 (842)
Q Consensus 476 l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~--------~l 547 (842)
|..-+-+|-+.|.-++|-|+.|||||.|.+.++--+-... ....|+.-.. + ...+...... .+
T Consensus 17 lDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g-------~~v~yvsTe~-T-~refi~qm~sl~ydv~~~~l 87 (235)
T COG2874 17 LDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNG-------YRVTYVSTEL-T-VREFIKQMESLSYDVSDFLL 87 (235)
T ss_pred HHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCC-------ceEEEEEech-h-HHHHHHHHHhcCCCchHHHh
Confidence 3344555666678888999999999999998877654321 3455554321 2 2222222111 11
Q ss_pred hCC-----------CCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-hHHHHHhhcCC-C-CCCCcEEE
Q 003175 548 SGH-----------RVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-QSVLYNILDWP-T-KPNSKLIV 613 (842)
Q Consensus 548 ~g~-----------~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-~~~L~~ll~~~-~-~~~~~viv 613 (842)
.|. ..........|...+...+. ...-||+||-+..+.... ....+++|... . ....++++
T Consensus 88 ~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~-----~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIi 162 (235)
T COG2874 88 SGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKR-----WEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVII 162 (235)
T ss_pred cceeEEEEecccccccChHHHHHHHHHHHhhHHh-----hcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEE
Confidence 121 11223334444444433321 255799999999998865 33444444321 0 12566777
Q ss_pred EEEeCCCCCccccchhhhccCC
Q 003175 614 IGIANTMDLPEKLLPRISSRMG 635 (842)
Q Consensus 614 I~~tn~~dl~~~l~~~l~sR~~ 635 (842)
+ +.|...+.+...-++++-+.
T Consensus 163 l-Tvhp~~l~e~~~~rirs~~d 183 (235)
T COG2874 163 L-TVHPSALDEDVLTRIRSACD 183 (235)
T ss_pred E-EeChhhcCHHHHHHHHHhhh
Confidence 6 56654455555555554443
No 450
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.97 E-value=0.019 Score=64.72 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 464 CRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 464 gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
.-......+...+.. +.+-+|++||.|+|||+++.++++.+...
T Consensus 242 ~~~~~~~~~~~~~~~-------p~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 242 MSPFQLARLLRLLNR-------PQGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred CCHHHHHHHHHHHhC-------CCeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 334444555544443 35778899999999999999999999854
No 451
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.95 E-value=0.018 Score=55.78 Aligned_cols=121 Identities=12% Similarity=0.071 Sum_probs=64.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEE---EecccCCChHHHHHHHHHHH---hCCC-----CCHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVE---VNGLKLASPENIYRVIYEAL---SGHR-----VSWKK 556 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~---in~~~~~s~~~~~~~i~~~l---~g~~-----~~~~~ 556 (842)
+-+.||+++|.|||+++-.++-...... .++.. +.+........+++.+...- .|.. ....+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g-------~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~ 75 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG-------YRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEE 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-------CeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHH
Confidence 4578899999999999988877665431 23333 34432344444444331000 0111 01122
Q ss_pred HHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC---hHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 557 ALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN---QSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 557 ~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~---~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
......+.+..+.... ..+..-+|||||+-...... .+.+..+++. ....+-||.|++.
T Consensus 76 ~~~~a~~~~~~a~~~~-~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~---rp~~~evIlTGr~ 137 (159)
T cd00561 76 DIAAAAEGWAFAKEAI-ASGEYDLVILDEINYALGYGLLDVEEVVDLLKA---KPEDLELVLTGRN 137 (159)
T ss_pred HHHHHHHHHHHHHHHH-hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc---CCCCCEEEEECCC
Confidence 2222233333222211 12467899999998886543 5667777763 2345566656654
No 452
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.94 E-value=0.02 Score=57.25 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=22.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
..++|.|+||+||||+++.+++.++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5688999999999999999998764
No 453
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.93 E-value=0.0089 Score=58.62 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=59.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCC--CCCHHHHH-HHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGH--RVSWKKAL-HSLNE 563 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~--~~~~~~~~-~~L~~ 563 (842)
|..+.|.|+.|+|||+|++.++..+... ---|.+++..+..... .......+ +. ..+..+.. -.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--------~G~v~~~g~~~~~~~~-~~~~~~~i-~~~~qLS~G~~qrl~lar 95 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPD--------SGEILVDGKEVSFASP-RDARRAGI-AMVYQLSVGERQMVEIAR 95 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC--------CeEEEECCEECCcCCH-HHHHhcCe-EEEEecCHHHHHHHHHHH
Confidence 6789999999999999999998765422 1246666655432100 00011000 00 02222221 11222
Q ss_pred HhhcccCCCCCCCCcEEEEEecCcccc-cCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 564 RFLDGKKIGKEDDRPCILLIDELDLLV-TRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 564 ~f~~~~~~~~~~~~~~IlilDEid~L~-~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
.+. ..|.||++||...-. ......+.+++..... . ...+|.++.+
T Consensus 96 al~---------~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sh~ 141 (163)
T cd03216 96 ALA---------RNARLLILDEPTAALTPAEVERLFKVIRRLRA-Q-GVAVIFISHR 141 (163)
T ss_pred HHh---------cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCC
Confidence 221 367899999986543 3345667777754322 2 2344446665
No 454
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.92 E-value=0.023 Score=55.94 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+.|.|+.|+|||+|++.++..+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 67899999999999999999988765
No 455
>PRK07078 hypothetical protein; Validated
Probab=95.91 E-value=0.73 Score=56.02 Aligned_cols=68 Identities=16% Similarity=0.043 Sum_probs=43.9
Q ss_pred cccHHHHHHHHHHHhhC--hHHHHHhhCchHHHHHHHHHHHHHHHcCCcceeHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 003175 716 LVGMADVEAAIQEMFQA--PHIQVMKSCSKLSKIFLTAMVYELYKTGMGETNFEKLAMTVSSLCTSNGEIFPSWDALLRV 793 (842)
Q Consensus 716 ~It~~dv~~A~~~~~~~--~~~~~l~~ls~~~kliL~a~~~~~~~~g~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~ 793 (842)
....+.|.+|..+...+ ...++|..+ +. ......+...+||+.|+..|+.+|..+.+...|.+.
T Consensus 657 L~~P~~V~~at~eY~~e~D~v~~Fl~e~-----------c~---~~~~~~~~~~~LY~~Y~~wc~~~G~~~~s~k~F~~~ 722 (759)
T PRK07078 657 LDPPQSVVEATEEYFEAEDALGQWIEER-----------CE---RGANAKELTAELFNDWKEWAERAGEFVGSQKRFSDL 722 (759)
T ss_pred CCCCHHHHHHHHHHHHhCChHHHHHHHh-----------ce---eCCCCceeHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 44567788887766542 333333321 10 112234679999999999999999988888887766
Q ss_pred HHHh
Q 003175 794 GCKL 797 (842)
Q Consensus 794 ~~~L 797 (842)
+...
T Consensus 723 L~~~ 726 (759)
T PRK07078 723 LATR 726 (759)
T ss_pred HHhc
Confidence 5444
No 456
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.90 E-value=0.0066 Score=56.45 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 003175 490 LYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 490 ili~GppGtGKT~l~~~v~~~l 511 (842)
|+|.|++|+||||+++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999986
No 457
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.87 E-value=0.046 Score=65.74 Aligned_cols=92 Identities=22% Similarity=0.221 Sum_probs=57.2
Q ss_pred hhc-CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCC------
Q 003175 479 ATC-DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHR------ 551 (842)
Q Consensus 479 ~i~-~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~------ 551 (842)
.+. +|-..+..++|+|++|+|||+|+..++...... + -.++||+...-.++. .++.+ |..
T Consensus 51 lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~---G----~~v~yId~E~t~~~~-----~A~~l-GvDl~~llv 117 (790)
T PRK09519 51 ALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---G----GVAAFIDAEHALDPD-----YAKKL-GVDTDSLLV 117 (790)
T ss_pred hhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc---C----CcEEEECCccchhHH-----HHHHc-CCChhHeEE
Confidence 344 454557889999999999999998776655432 1 347888876544422 22332 221
Q ss_pred ---CCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 552 ---VSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 552 ---~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
.+.++.+..+...+.. ..+.+||||-+..|..
T Consensus 118 ~~~~~~E~~l~~i~~lv~~--------~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 118 SQPDTGEQALEIADMLIRS--------GALDIVVIDSVAALVP 152 (790)
T ss_pred ecCCCHHHHHHHHHHHhhc--------CCCeEEEEcchhhhcc
Confidence 2234444444444322 3678999999998885
No 458
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.87 E-value=0.029 Score=59.62 Aligned_cols=27 Identities=22% Similarity=0.493 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
.+.++|+|++|+||||++++++..+..
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 467899999999999999999888753
No 459
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.82 E-value=0.11 Score=51.36 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=30.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCC
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLA 534 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~ 534 (842)
.++|+|+||+|||+++..++..+.... ..++.+++....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g-------~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG-------KKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-------CcEEEEEcCCCC
Confidence 468999999999999999999887431 457778876644
No 460
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.80 E-value=0.0064 Score=57.92 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 003175 490 LYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 490 ili~GppGtGKT~l~~~v~~~l~ 512 (842)
++|.|+||+||||+++.+++.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999988765
No 461
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.76 E-value=0.037 Score=60.28 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 473 TAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 473 ~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
..+|..++.. +.+++|+|++|+|||+++++++..+.
T Consensus 138 ~~~L~~~v~~----~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 138 REAIIAAVRA----HRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred HHHHHHHHHc----CCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 3556655553 47899999999999999999998763
No 462
>PRK03839 putative kinase; Provisional
Probab=95.75 E-value=0.0077 Score=60.07 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=22.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.|+|.|+||+||||+++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999999986
No 463
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.74 E-value=0.021 Score=57.54 Aligned_cols=58 Identities=26% Similarity=0.297 Sum_probs=35.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhc-C--CCCCceEEEEecccCCChHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVES-G--SIRPYCFVEVNGLKLASPENIYRVIYEA 546 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~-~--~~~~~~~v~in~~~~~s~~~~~~~i~~~ 546 (842)
+...+|+|++|+|||+++..++..+.....- + ......++||++..- ...+...+...
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~ 92 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRAL 92 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHH
Confidence 6778999999999999999999888731100 0 002357899987653 33444444433
No 464
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.73 E-value=0.06 Score=58.26 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=58.5
Q ss_pred HHHhhc-CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCC---
Q 003175 476 IKGATC-DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHR--- 551 (842)
Q Consensus 476 l~~~i~-~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~--- 551 (842)
|..++. +|-+.++.+-|+|++|+|||+|+..++.++... ...+++|++..-.++. .++.+ |..
T Consensus 41 LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~-------g~~~a~ID~e~~ld~~-----~a~~l-Gvdl~r 107 (322)
T PF00154_consen 41 LDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ-------GGICAFIDAEHALDPE-----YAESL-GVDLDR 107 (322)
T ss_dssp HHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-------T-EEEEEESSS---HH-----HHHHT-T--GGG
T ss_pred cchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc-------cceeEEecCcccchhh-----HHHhc-Cccccc
Confidence 333443 455457778899999999999999888877643 1568999987655442 22222 332
Q ss_pred ------CCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC
Q 003175 552 ------VSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR 592 (842)
Q Consensus 552 ------~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~ 592 (842)
...++++..++..+... ...+||+|-+..|.++
T Consensus 108 llv~~P~~~E~al~~~e~lirsg--------~~~lVVvDSv~al~p~ 146 (322)
T PF00154_consen 108 LLVVQPDTGEQALWIAEQLIRSG--------AVDLVVVDSVAALVPK 146 (322)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHTT--------SESEEEEE-CTT-B-H
T ss_pred eEEecCCcHHHHHHHHHHHhhcc--------cccEEEEecCcccCCH
Confidence 24466666666665432 3468999999998764
No 465
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.014 Score=57.63 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.|+.|+|||+|++.++..+.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 78899999999999999999988765
No 466
>PRK00625 shikimate kinase; Provisional
Probab=95.70 E-value=0.0087 Score=59.21 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=22.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+|+|+|.||+|||++++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999986
No 467
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.70 E-value=0.081 Score=70.81 Aligned_cols=127 Identities=16% Similarity=0.214 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHH
Q 003175 466 NKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYE 545 (842)
Q Consensus 466 e~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~ 545 (842)
+.|.+.+..++.. . .+..+|.|++|||||++++.+...+.... ..++-+- .. . ..-..|.+
T Consensus 432 ~~Q~~Av~~il~s----~---~~v~ii~G~aGTGKTt~l~~l~~~~~~~G-------~~V~~lA-PT--g--rAA~~L~e 492 (1960)
T TIGR02760 432 PSNKDAVSTLFTS----T---KRFIIINGFGGTGSTEIAQLLLHLASEQG-------YEIQIIT-AG--S--LSAQELRQ 492 (1960)
T ss_pred HHHHHHHHHHHhC----C---CCeEEEEECCCCCHHHHHHHHHHHHHhcC-------CeEEEEe-CC--H--HHHHHHHH
Confidence 5555555555443 2 47788999999999999999988776431 2333332 11 1 11223333
Q ss_pred HHhCCC-CCHHHHHHH---------HHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEE
Q 003175 546 ALSGHR-VSWKKALHS---------LNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIG 615 (842)
Q Consensus 546 ~l~g~~-~~~~~~~~~---------L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~ 615 (842)
.. |.. .+....+.. +...+....+ -....||||||+..+.. ..+..|++.....+.+|++||
T Consensus 493 ~~-g~~A~Ti~~~l~~l~~~~~~~tv~~fl~~~~~----l~~~~vlIVDEAsMl~~---~~~~~Ll~~a~~~garvVlvG 564 (1960)
T TIGR02760 493 KI-PRLASTFITWVKNLFNDDQDHTVQGLLDKSSP----FSNKDIFVVDEANKLSN---NELLKLIDKAEQHNSKLILLN 564 (1960)
T ss_pred Hh-cchhhhHHHHHHhhcccccchhHHHhhcccCC----CCCCCEEEEECCCCCCH---HHHHHHHHHHhhcCCEEEEEc
Confidence 22 211 111111110 0011100001 02457999999999854 566667765545678899987
Q ss_pred EeCC
Q 003175 616 IANT 619 (842)
Q Consensus 616 ~tn~ 619 (842)
=+..
T Consensus 565 D~~Q 568 (1960)
T TIGR02760 565 DSAQ 568 (1960)
T ss_pred Chhh
Confidence 4443
No 468
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.69 E-value=0.16 Score=56.24 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l 511 (842)
..+++++|..|+|||+-+-..+-+.
T Consensus 62 nQ~~v~vGetgsGKttQiPq~~~~~ 86 (699)
T KOG0925|consen 62 NQIIVLVGETGSGKTTQIPQFVLEY 86 (699)
T ss_pred CceEEEEecCCCCccccCcHHHHHH
Confidence 5789999999999999765544443
No 469
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.69 E-value=0.0079 Score=60.06 Aligned_cols=23 Identities=22% Similarity=0.592 Sum_probs=21.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 003175 490 LYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 490 ili~GppGtGKT~l~~~v~~~l~ 512 (842)
++|+|+||+||||+++.+++.++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999998875
No 470
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.67 E-value=0.0064 Score=58.68 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.++|+|.|||||||+++.+. .++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg 24 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELG 24 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhC
Confidence 47899999999999999887 665
No 471
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=95.65 E-value=0.029 Score=56.68 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=30.5
Q ss_pred CcEEEEEecCcccccCChH------HHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCC
Q 003175 577 RPCILLIDELDLLVTRNQS------VLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMG 635 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~~~------~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~ 635 (842)
...||||||++.+.+.+.. .+.+.|... .+..+-||.+|.. +..+++.++...+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~h--Rh~g~diiliTQ~---~~~id~~ir~lve 138 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQH--RHYGWDIILITQS---PSQIDKFIRDLVE 138 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGC--CCTT-EEEEEES----GGGB-HHHHCCEE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHh--CcCCcEEEEEeCC---HHHHhHHHHHHHh
Confidence 4589999999998875422 223555432 3445666778877 4677777765544
No 472
>PRK02496 adk adenylate kinase; Provisional
Probab=95.64 E-value=0.039 Score=55.17 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 003175 490 LYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 490 ili~GppGtGKT~l~~~v~~~l~ 512 (842)
++|.|+||+|||++++.+++.++
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998875
No 473
>PTZ00035 Rad51 protein; Provisional
Probab=95.63 E-value=0.064 Score=59.01 Aligned_cols=63 Identities=17% Similarity=0.085 Sum_probs=40.6
Q ss_pred HHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 476 IKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 476 l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
|...+.+|-..+..+.|+|++|+|||+++..++-...-....+ ...-.++||+.....++..+
T Consensus 107 LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~g-g~~g~vvyIdtE~~f~~eri 169 (337)
T PTZ00035 107 LDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQG-GGEGKVLYIDTEGTFRPERI 169 (337)
T ss_pred HHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccC-CCCceEEEEEccCCCCHHHH
Confidence 4445556655678888999999999999988875543110011 11135789998765555443
No 474
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.021 Score=55.48 Aligned_cols=111 Identities=22% Similarity=0.250 Sum_probs=58.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC--hHHHHHHHHHHHhCCCCCHHHHH-HHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS--PENIYRVIYEALSGHRVSWKKAL-HSLNE 563 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s--~~~~~~~i~~~l~g~~~~~~~~~-~~L~~ 563 (842)
+..+.|.|+.|+|||++++.++..+... .--+++++..... .......+.- + ...+..+.. -.+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~~--------~G~i~~~~~~~~~~~~~~~~~~i~~-~--~qlS~G~~~r~~l~~ 93 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPT--------SGEILIDGKDIAKLPLEELRRRIGY-V--PQLSGGQRQRVALAR 93 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC--------ccEEEECCEEcccCCHHHHHhceEE-E--eeCCHHHHHHHHHHH
Confidence 6788999999999999999998766422 1246677654432 1111110000 0 002222211 11222
Q ss_pred HhhcccCCCCCCCCcEEEEEecCcccc-cCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 564 RFLDGKKIGKEDDRPCILLIDELDLLV-TRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 564 ~f~~~~~~~~~~~~~~IlilDEid~L~-~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
.+. ..+.++++||...=. ......|.+++...... . ..+|.++..
T Consensus 94 ~l~---------~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~-~tii~~sh~ 139 (157)
T cd00267 94 ALL---------LNPDLLLLDEPTSGLDPASRERLLELLRELAEE-G-RTVIIVTHD 139 (157)
T ss_pred HHh---------cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-C-CEEEEEeCC
Confidence 221 257899999997543 33455666666533222 2 344446665
No 475
>PRK06547 hypothetical protein; Provisional
Probab=95.60 E-value=0.016 Score=57.37 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
...+.|.|++|+|||++++.+++.++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56788899999999999999998764
No 476
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.59 E-value=0.034 Score=60.71 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=42.1
Q ss_pred HHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHH
Q 003175 476 IKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYR 541 (842)
Q Consensus 476 l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~ 541 (842)
+...+.+|-..+..+.|+|+||+|||+++..++.........+... -.++||+...-.++..+.+
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~-~~~~yi~te~~f~~~rl~~ 148 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLG-GKAVYIDTENTFRPERIMQ 148 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCc-ceEEEEECCCCCCHHHHHH
Confidence 3444555555578889999999999999998877654211111111 2689999877555544443
No 477
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.58 E-value=0.077 Score=58.32 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=41.7
Q ss_pred HHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHH
Q 003175 476 IKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYR 541 (842)
Q Consensus 476 l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~ 541 (842)
|...+.+|-..+..+.|+|+||+|||+++..++-........+.. .-.++||+...-.++..+.+
T Consensus 112 LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~-~g~vlyIdtE~~f~~eRl~q 176 (342)
T PLN03186 112 LDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGG-EGKAMYIDTEGTFRPQRLIQ 176 (342)
T ss_pred HHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCC-CceEEEEECCCCccHHHHHH
Confidence 333445555567888899999999999998777543321111111 12589999887666654443
No 478
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.54 E-value=0.024 Score=56.59 Aligned_cols=115 Identities=26% Similarity=0.324 Sum_probs=61.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC--hHHHHHHH------HHHHhCC--------
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS--PENIYRVI------YEALSGH-------- 550 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s--~~~~~~~i------~~~l~g~-------- 550 (842)
|..+.|.|+.|+|||+|++.++..+... . --|++++..+.. ...+...+ .+.+ |.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~~--~------G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~-gl~~~~~~~~ 95 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKPS--S------GEILLDGKDLASLSPKELARKIAYVPQALELL-GLAHLADRPF 95 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC--C------cEEEECCEECCcCCHHHHHHHHhHHHHHHHHc-CCHhHhcCCc
Confidence 6789999999999999999998765422 1 146667655432 21111111 1111 11
Q ss_pred -CCCHHHHH-HHHHHHhhcccCCCCCCCCcEEEEEecCcccc-cCChHHHHHhhcCCCCCCCcEEEEEEeCCC
Q 003175 551 -RVSWKKAL-HSLNERFLDGKKIGKEDDRPCILLIDELDLLV-TRNQSVLYNILDWPTKPNSKLIVIGIANTM 620 (842)
Q Consensus 551 -~~~~~~~~-~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~-~~~~~~L~~ll~~~~~~~~~vivI~~tn~~ 620 (842)
..+..+.. -.|...+. ..|-++++||.-.-. ......+++++....... ...+|.++..+
T Consensus 96 ~~LS~G~~qrl~laral~---------~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~-~~tiii~sh~~ 158 (180)
T cd03214 96 NELSGGERQRVLLARALA---------QEPPILLLDEPTSHLDIAHQIELLELLRRLARER-GKTVVMVLHDL 158 (180)
T ss_pred ccCCHHHHHHHHHHHHHh---------cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 12222221 11222221 367899999997543 344566777775332211 23445566653
No 479
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=95.54 E-value=0.049 Score=53.26 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMR 509 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~ 509 (842)
+..++|.||+|+|||+.+...+-
T Consensus 14 ~~~~li~aptGsGKT~~~~~~~l 36 (169)
T PF00270_consen 14 GKNVLISAPTGSGKTLAYILPAL 36 (169)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCccHHHHHHHHH
Confidence 46799999999999998874443
No 480
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.53 E-value=0.013 Score=62.34 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=49.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcc
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDG 568 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~ 568 (842)
-|+|+|.||+|||++++.+...+.... ..++.++-..+.-....| ............+...+...
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~-------~~v~~i~~~~~~~~~~~y--------~~~~~Ek~~R~~l~s~v~r~ 67 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKG-------KEVVIISDDSLGIDRNDY--------ADSKKEKEARGSLKSAVERA 67 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT---------EEEE-THHHH-TTSSS----------GGGHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcC-------CEEEEEcccccccchhhh--------hchhhhHHHHHHHHHHHHHh
Confidence 478999999999999999999988631 446666522211000000 00111223333343333332
Q ss_pred cCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 569 KKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 569 ~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
. ++..|||+|+..++-+- .-.||.+-+. .+...++|.+...
T Consensus 68 l------s~~~iVI~Dd~nYiKg~-RYelyclAr~---~~~~~c~i~~~~~ 108 (270)
T PF08433_consen 68 L------SKDTIVILDDNNYIKGM-RYELYCLARA---YGTTFCVIYCDCP 108 (270)
T ss_dssp H------TT-SEEEE-S---SHHH-HHHHHHHHHH---TT-EEEEEEEE--
T ss_pred h------ccCeEEEEeCCchHHHH-HHHHHHHHHH---cCCCEEEEEECCC
Confidence 2 13368999999988432 2345555543 3456666665544
No 481
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.53 E-value=0.25 Score=52.68 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS 535 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s 535 (842)
+..+.|+|++|+||||++..++..+.... ..+.-+++..+..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g-------~~V~li~~D~~r~ 113 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQG-------KSVLLAAGDTFRA 113 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcC-------CEEEEEeCCCCCH
Confidence 57888999999999999999998886431 3455566555443
No 482
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=95.53 E-value=0.02 Score=65.80 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=60.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC--hHHHHHHHHHHHh---CCCCC--------
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS--PENIYRVIYEALS---GHRVS-------- 553 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s--~~~~~~~i~~~l~---g~~~~-------- 553 (842)
...++|.|..|+||||=+-.++.+.+-.. .| . |-|..-.- .-.+...+.+... |+.++
T Consensus 66 nqvlIviGeTGsGKSTQipQyL~eaG~~~-~g------~--I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ 136 (674)
T KOG0922|consen 66 NQVLIVIGETGSGKSTQIPQYLAEAGFAS-SG------K--IACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDS 136 (674)
T ss_pred CCEEEEEcCCCCCccccHhHHHHhccccc-CC------c--EEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEeccc
Confidence 57789999999999997766665554111 01 1 22222111 1122233333332 22211
Q ss_pred --------HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCC
Q 003175 554 --------WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTM 620 (842)
Q Consensus 554 --------~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~ 620 (842)
+-..--+|++.+.+.. -.++.||+|||+|.=.- ..++|+-|+.........+-||..+-++
T Consensus 137 ts~~TrikymTDG~LLRE~l~Dp~-----LskYsvIIlDEAHERsl-~TDiLlGlLKki~~~R~~LklIimSATl 205 (674)
T KOG0922|consen 137 TSKDTRIKYMTDGMLLREILKDPL-----LSKYSVIILDEAHERSL-HTDILLGLLKKILKKRPDLKLIIMSATL 205 (674)
T ss_pred CCCceeEEEecchHHHHHHhcCCc-----cccccEEEEechhhhhh-HHHHHHHHHHHHHhcCCCceEEEEeeee
Confidence 1111235666665542 24789999999985321 2466666665433333334444344343
No 483
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.52 E-value=0.024 Score=55.52 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+.-+||+||+|.||||+++.+..+...
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 678999999999999999999887653
No 484
>PRK13947 shikimate kinase; Provisional
Probab=95.50 E-value=0.011 Score=58.30 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=22.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+|+|.|+||+|||++++.+++.|+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999987
No 485
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.49 E-value=0.028 Score=57.02 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l 511 (842)
+..++|+||.|+|||++++.++...
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 4788999999999999999997644
No 486
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.49 E-value=0.028 Score=54.24 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=43.2
Q ss_pred EEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC-----hHHHHHHHHHHHh-CCCCCHHHHHHHHHHHh
Q 003175 492 IHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS-----PENIYRVIYEALS-GHRVSWKKALHSLNERF 565 (842)
Q Consensus 492 i~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s-----~~~~~~~i~~~l~-g~~~~~~~~~~~L~~~f 565 (842)
|.||||+|||++++.+++.++ +++|+...+.. ....-..+.+.+. |..+...-..+.+...+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~------------~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l 68 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG------------LVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERL 68 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT------------SEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC------------cceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 689999999999999999875 56666443211 1111223333332 44444444555666655
Q ss_pred hcccCCCCCCCCcEEEEEecCcc
Q 003175 566 LDGKKIGKEDDRPCILLIDELDL 588 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~ 588 (842)
.... ...-+|||.+-.
T Consensus 69 ~~~~-------~~~g~ildGfPr 84 (151)
T PF00406_consen 69 EQPP-------CNRGFILDGFPR 84 (151)
T ss_dssp HSGG-------TTTEEEEESB-S
T ss_pred hhhc-------ccceeeeeeccc
Confidence 5331 123467887743
No 487
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.47 E-value=0.025 Score=56.35 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.|+.|+|||+|++.++..+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 67899999999999999999988754
No 488
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.47 E-value=0.015 Score=64.38 Aligned_cols=26 Identities=15% Similarity=0.437 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
++.++|+||+|+||||++++++..+.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 57799999999999999999998875
No 489
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.45 E-value=2.3 Score=47.48 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=58.1
Q ss_pred HHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcC-C------cccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCC
Q 003175 447 ERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCD-D------QCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGS 519 (842)
Q Consensus 447 ~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~-~------~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~ 519 (842)
...++......+|..+...+.-++-+++-|...+-. . ..++..|++.|--|+||||++-.++..+....
T Consensus 53 ~~ikera~g~ev~~~l~p~q~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~---- 128 (451)
T COG0541 53 KRIKERALGEEVPKGLTPGQQFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKG---- 128 (451)
T ss_pred HHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcC----
Confidence 445555666667788888888888888777776653 1 11356799999999999999999999998631
Q ss_pred CCCceEEEEecccCC
Q 003175 520 IRPYCFVEVNGLKLA 534 (842)
Q Consensus 520 ~~~~~~v~in~~~~~ 534 (842)
..+.-+.|..+.
T Consensus 129 ---~kvllVaaD~~R 140 (451)
T COG0541 129 ---KKVLLVAADTYR 140 (451)
T ss_pred ---CceEEEecccCC
Confidence 345555555544
No 490
>PLN02200 adenylate kinase family protein
Probab=95.45 E-value=0.047 Score=56.92 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..++|.|+||+|||++++.+++.++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999988775
No 491
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.44 E-value=0.029 Score=55.75 Aligned_cols=26 Identities=38% Similarity=0.462 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+.|.|+.|+|||||++.++..+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 67889999999999999999887664
No 492
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.44 E-value=0.026 Score=55.91 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.|+.|+|||+|++.++..+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 67889999999999999999988764
No 493
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.43 E-value=0.012 Score=56.75 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=22.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+|+|+|+||+|||++++.++..++
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999885
No 494
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.42 E-value=0.018 Score=55.23 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.|+.|+|||+|++.++..+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 67889999999999999999988764
No 495
>PRK14530 adenylate kinase; Provisional
Probab=95.40 E-value=0.015 Score=59.79 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|.|+||+||||+++.+++.++
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998876
No 496
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.39 E-value=0.012 Score=56.03 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=21.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 003175 490 LYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 490 ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|-|.|+||+||||+++.+++.++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 67899999999999999999987
No 497
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.39 E-value=0.089 Score=60.20 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+..++|.||.|+||||++..++..+..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~ 282 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVM 282 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHH
Confidence 578999999999999999999988753
No 498
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.37 E-value=0.016 Score=47.83 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 003175 490 LYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 490 ili~GppGtGKT~l~~~v~~~l 511 (842)
+.|.|++|+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 499
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.37 E-value=0.018 Score=55.59 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCC
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLA 534 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~ 534 (842)
|..|.|+|.+|+|||++++++.+.|.... ..++.+++..+.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g-------~~~~~LDgD~lR 42 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG-------IKVYLLDGDNLR 42 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT-------S-EEEEEHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC-------CcEEEecCcchh
Confidence 46789999999999999999999998652 558888876554
No 500
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.37 E-value=0.095 Score=57.15 Aligned_cols=60 Identities=17% Similarity=0.046 Sum_probs=39.2
Q ss_pred HhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHH
Q 003175 478 GATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPEN 538 (842)
Q Consensus 478 ~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~ 538 (842)
..+.+|-..+..+.|+|+||+|||+++..++.........+.. .-.++||++....++..
T Consensus 87 ~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~-~~~vvyIdtE~~f~~~R 146 (316)
T TIGR02239 87 KLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGG-EGKALYIDTEGTFRPER 146 (316)
T ss_pred HHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCC-CceEEEEECCCCCCHHH
Confidence 3444555567888999999999999999887643321111111 12578999887655543
Done!