Query 003175
Match_columns 842
No_of_seqs 751 out of 4979
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 16:00:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3te6_A Regulatory protein SIR3 100.0 5.1E-38 1.7E-42 337.2 16.3 272 449-731 8-317 (318)
2 2v1u_A Cell division control p 100.0 2.6E-35 8.8E-40 329.8 35.5 366 448-838 7-386 (387)
3 2qby_A CDC6 homolog 1, cell di 100.0 5.1E-33 1.7E-37 310.9 32.3 364 448-838 8-384 (386)
4 2qby_B CDC6 homolog 3, cell di 100.0 6.6E-33 2.3E-37 310.3 32.4 346 448-832 8-368 (384)
5 1fnn_A CDC6P, cell division co 100.0 1.8E-32 6E-37 307.2 32.8 352 449-832 6-382 (389)
6 1w5s_A Origin recognition comp 100.0 1.4E-28 4.8E-33 277.8 30.8 359 448-831 10-401 (412)
7 4b4t_J 26S protease regulatory 99.9 2.6E-23 8.8E-28 227.8 21.2 231 436-731 143-391 (405)
8 4b4t_I 26S protease regulatory 99.9 2E-23 6.8E-28 229.0 15.5 232 435-731 176-425 (437)
9 4b4t_H 26S protease regulatory 99.9 1.6E-22 5.4E-27 224.1 21.6 230 437-731 205-452 (467)
10 4b4t_M 26S protease regulatory 99.9 1.3E-22 4.4E-27 225.9 16.1 231 436-731 176-424 (434)
11 4b4t_L 26S protease subunit RP 99.9 3E-22 1E-26 223.2 18.7 226 436-732 176-425 (437)
12 4b4t_K 26S protease regulatory 99.9 1.1E-21 3.7E-26 218.4 20.2 194 485-730 204-415 (428)
13 3eie_A Vacuolar protein sortin 99.8 1.9E-20 6.6E-25 204.0 19.6 236 460-732 18-301 (322)
14 2qp9_X Vacuolar protein sortin 99.8 8.5E-20 2.9E-24 201.3 20.2 238 460-734 51-336 (355)
15 3uk6_A RUVB-like 2; hexameric 99.8 2.3E-19 7.9E-24 199.2 21.4 249 453-730 37-331 (368)
16 1xwi_A SKD1 protein; VPS4B, AA 99.8 2E-19 6.7E-24 195.7 20.1 204 462-701 14-235 (322)
17 3h4m_A Proteasome-activating n 99.8 1.2E-19 4.2E-24 194.1 16.9 224 458-731 15-260 (285)
18 3pfi_A Holliday junction ATP-d 99.8 3.6E-18 1.2E-22 187.4 24.4 268 460-806 29-313 (338)
19 3cf2_A TER ATPase, transitiona 99.8 1.9E-20 6.5E-25 222.7 5.3 248 437-736 473-750 (806)
20 1w4s_A Polybromo, polybromo 1 99.8 2.1E-20 7.2E-25 183.3 3.9 101 266-366 43-146 (174)
21 3cf0_A Transitional endoplasmi 99.8 3.9E-19 1.3E-23 191.7 12.6 235 461-733 16-285 (301)
22 2qz4_A Paraplegin; AAA+, SPG7, 99.8 2.5E-18 8.4E-23 181.4 17.7 223 459-731 5-251 (262)
23 3cf2_A TER ATPase, transitiona 99.8 3.2E-19 1.1E-23 212.3 11.8 229 462-729 206-459 (806)
24 2zan_A Vacuolar protein sortin 99.8 1.8E-18 6.3E-23 196.2 17.2 206 460-701 134-357 (444)
25 3d8b_A Fidgetin-like protein 1 99.8 4.7E-18 1.6E-22 187.6 19.6 235 460-732 84-337 (357)
26 3vfd_A Spastin; ATPase, microt 99.8 3.8E-18 1.3E-22 190.8 19.1 235 460-732 115-368 (389)
27 1in4_A RUVB, holliday junction 99.8 3.4E-17 1.2E-21 179.1 24.7 270 460-806 25-310 (334)
28 1lv7_A FTSH; alpha/beta domain 99.8 1.6E-17 5.5E-22 174.8 20.1 219 460-730 12-253 (257)
29 3hu3_A Transitional endoplasmi 99.8 2.7E-18 9.3E-23 196.0 15.0 235 460-732 204-462 (489)
30 2c9o_A RUVB-like 1; hexameric 99.8 1.3E-17 4.5E-22 190.2 20.3 132 579-730 297-438 (456)
31 2chg_A Replication factor C sm 99.8 7.7E-17 2.6E-21 164.7 23.1 207 460-727 17-224 (226)
32 3b9p_A CG5977-PA, isoform A; A 99.8 1.7E-17 5.7E-22 178.6 18.9 235 460-732 21-275 (297)
33 1ofh_A ATP-dependent HSL prote 99.7 1.3E-17 4.5E-22 180.2 16.9 238 460-729 15-299 (310)
34 2ce7_A Cell division protein F 99.7 3E-17 1E-21 185.7 20.4 220 460-731 16-258 (476)
35 1sxj_D Activator 1 41 kDa subu 99.7 5.6E-17 1.9E-21 178.7 21.5 225 460-728 37-262 (353)
36 1hqc_A RUVB; extended AAA-ATPa 99.7 2.7E-17 9.2E-22 179.1 18.1 231 460-754 12-258 (324)
37 1sxj_B Activator 1 37 kDa subu 99.7 1.7E-16 5.8E-21 172.4 22.8 275 460-801 21-296 (323)
38 3syl_A Protein CBBX; photosynt 99.7 1.8E-17 6E-22 179.4 14.3 209 461-700 32-266 (309)
39 3pvs_A Replication-associated 99.7 2.4E-16 8.2E-21 178.2 22.9 208 460-729 26-244 (447)
40 1iqp_A RFCS; clamp loader, ext 99.7 2.1E-16 7.1E-21 172.0 20.9 192 460-694 25-217 (327)
41 1l8q_A Chromosomal replication 99.7 1.4E-16 4.6E-21 173.7 19.3 242 452-740 3-250 (324)
42 1jr3_A DNA polymerase III subu 99.7 3.9E-16 1.3E-20 173.3 22.3 213 460-728 16-243 (373)
43 2chq_A Replication factor C sm 99.7 3.5E-16 1.2E-20 169.6 20.7 207 460-727 17-224 (319)
44 3u61_B DNA polymerase accessor 99.7 2.5E-16 8.5E-21 171.6 18.7 185 460-693 26-220 (324)
45 1njg_A DNA polymerase III subu 99.7 9.3E-17 3.2E-21 166.2 13.0 211 460-726 23-248 (250)
46 2dhr_A FTSH; AAA+ protein, hex 99.7 3.6E-16 1.2E-20 177.9 18.9 222 458-731 29-273 (499)
47 1d2n_A N-ethylmaleimide-sensit 99.7 2.1E-16 7.3E-21 167.7 15.9 201 458-696 31-249 (272)
48 3bos_A Putative DNA replicatio 99.7 1.9E-16 6.5E-21 164.2 14.5 185 487-727 52-241 (242)
49 1sxj_C Activator 1 40 kDa subu 99.7 6E-16 2.1E-20 169.8 19.0 212 461-728 26-238 (340)
50 2x8a_A Nuclear valosin-contain 99.7 7.1E-16 2.4E-20 163.5 18.4 244 436-732 5-267 (274)
51 2r62_A Cell division protease 99.7 1.5E-18 5.2E-23 183.8 -3.2 223 459-732 10-256 (268)
52 2z4s_A Chromosomal replication 99.7 3E-16 1E-20 177.7 14.8 232 452-730 97-333 (440)
53 1sxj_A Activator 1 95 kDa subu 99.7 5.1E-16 1.8E-20 179.7 16.7 221 460-729 39-274 (516)
54 2r44_A Uncharacterized protein 99.7 4.3E-15 1.5E-19 162.3 22.6 224 460-732 27-300 (331)
55 1ixz_A ATP-dependent metallopr 99.7 1.1E-15 3.8E-20 160.4 17.1 189 487-726 49-253 (254)
56 3m6a_A ATP-dependent protease 99.6 6.7E-16 2.3E-20 179.3 13.6 304 376-727 9-339 (543)
57 1iy2_A ATP-dependent metallopr 99.6 5.4E-15 1.8E-19 157.4 17.5 215 460-726 40-277 (278)
58 4fcw_A Chaperone protein CLPB; 99.6 1.8E-15 6E-20 163.7 13.7 218 460-699 17-281 (311)
59 1a5t_A Delta prime, HOLB; zinc 99.6 3.8E-14 1.3E-18 154.9 18.3 190 462-693 4-209 (334)
60 1um8_A ATP-dependent CLP prote 99.6 1.5E-14 5E-19 161.0 15.2 243 446-726 12-362 (376)
61 1ojl_A Transcriptional regulat 99.5 2.6E-15 8.8E-20 161.7 6.6 210 460-696 2-235 (304)
62 2bjv_A PSP operon transcriptio 99.5 4.1E-15 1.4E-19 157.1 7.9 212 459-696 5-240 (265)
63 3t15_A Ribulose bisphosphate c 99.5 5.5E-14 1.9E-18 150.6 16.7 159 486-681 35-218 (293)
64 3hws_A ATP-dependent CLP prote 99.5 5.1E-14 1.8E-18 155.8 16.1 212 462-699 17-325 (363)
65 1g8p_A Magnesium-chelatase 38 99.5 1.5E-13 5.2E-18 151.0 17.8 139 578-732 145-325 (350)
66 1r6b_X CLPA protein; AAA+, N-t 99.5 4.1E-14 1.4E-18 171.8 14.3 232 437-697 440-716 (758)
67 1jbk_A CLPB protein; beta barr 99.5 1.2E-13 4.2E-18 137.2 12.7 164 459-653 21-194 (195)
68 3pxg_A Negative regulator of g 99.5 2.9E-13 1E-17 154.5 17.0 199 460-699 180-388 (468)
69 1mm2_A MI2-beta; PHD, zinc fin 99.5 1.6E-14 5.5E-19 114.7 4.1 53 185-239 6-58 (61)
70 2gno_A DNA polymerase III, gam 99.5 8E-13 2.7E-17 141.8 18.2 171 474-694 7-178 (305)
71 2e6r_A Jumonji/ARID domain-con 99.5 1.9E-14 6.7E-19 124.2 4.1 57 184-240 12-69 (92)
72 1sxj_E Activator 1 40 kDa subu 99.5 5.9E-13 2E-17 146.6 17.0 202 460-695 14-243 (354)
73 2qen_A Walker-type ATPase; unk 99.5 8.4E-12 2.9E-16 136.7 26.1 281 457-806 9-333 (350)
74 1qvr_A CLPB protein; coiled co 99.4 6.6E-13 2.3E-17 162.9 17.5 207 460-697 170-393 (854)
75 3pxi_A Negative regulator of g 99.4 3.6E-13 1.2E-17 163.3 14.9 207 460-699 491-727 (758)
76 1fp0_A KAP-1 corepressor; PHD 99.4 4.7E-14 1.6E-18 118.7 4.5 54 183-238 20-73 (88)
77 2lri_C Autoimmune regulator; Z 99.4 3E-14 1E-18 114.4 2.7 52 185-238 9-60 (66)
78 1r6b_X CLPA protein; AAA+, N-t 99.4 3.5E-12 1.2E-16 154.9 21.7 234 460-730 186-434 (758)
79 1xwh_A Autoimmune regulator; P 99.4 3.2E-14 1.1E-18 115.1 2.4 52 186-239 6-57 (66)
80 2l5u_A Chromodomain-helicase-D 99.4 3.7E-14 1.3E-18 112.6 2.2 53 184-238 7-59 (61)
81 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 7.7E-13 2.6E-17 150.8 13.9 224 460-729 22-285 (500)
82 2yql_A PHD finger protein 21A; 99.4 5.3E-14 1.8E-18 109.9 2.8 50 185-236 6-55 (56)
83 1qvr_A CLPB protein; coiled co 99.4 3.9E-13 1.4E-17 164.8 12.0 218 460-699 558-822 (854)
84 1g41_A Heat shock protein HSLU 99.4 6E-12 2.1E-16 140.3 19.5 146 578-731 251-435 (444)
85 1ypw_A Transitional endoplasmi 99.4 5.4E-16 1.8E-20 188.0 -14.5 176 486-699 510-701 (806)
86 2puy_A PHD finger protein 21A; 99.4 4.3E-14 1.5E-18 112.2 1.0 52 186-239 3-54 (60)
87 2fna_A Conserved hypothetical 99.4 1.3E-11 4.5E-16 135.4 20.8 286 456-806 9-341 (357)
88 1f62_A Transcription factor WS 99.4 6.5E-14 2.2E-18 107.4 1.4 47 190-236 2-49 (51)
89 1ypw_A Transitional endoplasmi 99.4 1.4E-12 4.8E-17 158.1 11.4 202 460-699 204-425 (806)
90 1wev_A Riken cDNA 1110020M19; 99.3 3.2E-13 1.1E-17 115.6 2.4 56 184-239 12-74 (88)
91 2p65_A Hypothetical protein PF 99.3 3.3E-12 1.1E-16 126.3 9.9 155 460-645 22-187 (187)
92 3pxi_A Negative regulator of g 99.3 1.1E-11 3.8E-16 150.2 15.7 199 460-699 180-388 (758)
93 3swr_A DNA (cytosine-5)-methyl 99.3 4.9E-13 1.7E-17 161.9 3.1 97 266-364 175-283 (1002)
94 3av4_A DNA (cytosine-5)-methyl 99.3 4.9E-13 1.7E-17 165.5 3.1 97 267-365 487-596 (1330)
95 3n70_A Transport activator; si 99.3 1E-12 3.4E-17 125.3 4.4 139 461-644 2-144 (145)
96 3asl_A E3 ubiquitin-protein li 99.3 1.3E-12 4.4E-17 106.5 2.6 48 190-237 20-69 (70)
97 3u5n_A E3 ubiquitin-protein li 99.3 1.3E-12 4.4E-17 131.8 3.0 54 184-239 3-56 (207)
98 1jr3_D DNA polymerase III, del 99.2 1.6E-10 5.4E-15 126.6 19.5 200 486-741 17-221 (343)
99 2l43_A N-teminal domain from h 99.2 1.3E-12 4.4E-17 111.6 1.8 53 186-240 23-78 (88)
100 2e6s_A E3 ubiquitin-protein li 99.2 2.1E-12 7.2E-17 107.0 2.8 47 190-236 28-76 (77)
101 3f9v_A Minichromosome maintena 99.2 8.9E-13 3.1E-17 154.3 -0.1 139 578-730 392-588 (595)
102 2yt5_A Metal-response element- 99.2 1.5E-12 5E-17 105.8 1.1 54 185-238 3-62 (66)
103 2ku3_A Bromodomain-containing 99.2 1E-12 3.6E-17 107.0 0.1 53 184-238 12-67 (71)
104 2k16_A Transcription initiatio 99.2 1.9E-12 6.5E-17 108.0 1.1 56 183-238 13-69 (75)
105 3o36_A Transcription intermedi 99.2 5.6E-12 1.9E-16 124.8 4.3 51 187-239 3-53 (184)
106 3shb_A E3 ubiquitin-protein li 99.2 4.1E-12 1.4E-16 105.1 2.6 47 190-236 28-76 (77)
107 1wen_A Inhibitor of growth fam 99.2 8.8E-12 3E-16 101.7 4.3 54 182-238 10-66 (71)
108 3co5_A Putative two-component 99.2 6.1E-12 2.1E-16 119.5 3.9 136 461-644 5-142 (143)
109 3k1j_A LON protease, ATP-depen 99.2 6.2E-11 2.1E-15 139.6 11.9 138 577-728 201-374 (604)
110 1weu_A Inhibitor of growth fam 99.2 1.7E-11 5.9E-16 104.3 5.0 53 183-238 31-86 (91)
111 3c6w_A P28ING5, inhibitor of g 99.2 4.6E-12 1.6E-16 99.4 1.1 50 185-237 6-58 (59)
112 2vnf_A ING 4, P29ING4, inhibit 99.2 4.6E-12 1.6E-16 99.9 1.0 51 184-237 6-59 (60)
113 2g6q_A Inhibitor of growth pro 99.1 7.9E-12 2.7E-16 99.0 1.1 52 183-237 6-60 (62)
114 4gne_A Histone-lysine N-methyl 99.1 2E-11 6.9E-16 107.4 2.9 55 183-241 10-66 (107)
115 3ask_A E3 ubiquitin-protein li 99.1 2.3E-11 7.9E-16 120.8 3.5 50 188-237 174-225 (226)
116 2ro1_A Transcription intermedi 99.1 2.7E-11 9.3E-16 119.7 3.4 48 189-238 3-50 (189)
117 2lv9_A Histone-lysine N-methyl 99.1 3.8E-11 1.3E-15 105.1 3.5 52 185-238 25-77 (98)
118 2jmi_A Protein YNG1, ING1 homo 99.1 2.5E-11 8.7E-16 103.0 1.9 51 183-236 21-75 (90)
119 1ny5_A Transcriptional regulat 99.0 1.2E-10 4.1E-15 129.5 6.4 223 460-725 137-383 (387)
120 3v43_A Histone acetyltransfera 99.0 6.7E-11 2.3E-15 106.6 2.9 51 187-237 60-112 (112)
121 2kwj_A Zinc finger protein DPF 99.0 5E-11 1.7E-15 107.7 1.9 51 187-237 57-108 (114)
122 3dzd_A Transcriptional regulat 99.0 6.3E-10 2.2E-14 122.7 8.3 209 460-696 129-361 (368)
123 1x4i_A Inhibitor of growth pro 98.9 9E-11 3.1E-15 95.4 0.0 51 185-238 3-56 (70)
124 2ysm_A Myeloid/lymphoid or mix 98.9 2.5E-10 8.5E-15 103.0 2.2 53 187-239 53-106 (111)
125 2lbm_A Transcriptional regulat 98.8 2.7E-10 9.1E-15 105.2 -0.7 53 184-238 59-118 (142)
126 3o70_A PHD finger protein 13; 98.8 1.2E-09 4E-14 88.3 1.9 53 183-237 14-67 (68)
127 4akg_A Glutathione S-transfera 98.8 2.8E-08 9.4E-13 131.9 14.5 164 468-659 1252-1433(2695)
128 3swr_A DNA (cytosine-5)-methyl 98.8 3.3E-09 1.1E-13 128.6 5.0 98 266-363 392-502 (1002)
129 2kjq_A DNAA-related protein; s 98.8 4.1E-09 1.4E-13 100.6 4.5 105 487-636 36-141 (149)
130 3f8t_A Predicted ATPase involv 98.7 1.9E-08 6.6E-13 111.2 9.1 222 462-730 215-484 (506)
131 3ec2_A DNA replication protein 98.7 1.9E-08 6.4E-13 99.2 8.1 104 487-620 38-143 (180)
132 3av4_A DNA (cytosine-5)-methyl 98.7 5.5E-09 1.9E-13 129.7 3.4 97 266-362 704-812 (1330)
133 2rsd_A E3 SUMO-protein ligase 98.7 4E-09 1.4E-13 85.6 1.3 52 184-238 6-66 (68)
134 1wee_A PHD finger family prote 98.7 6.7E-09 2.3E-13 85.4 2.6 55 183-238 11-67 (72)
135 1wem_A Death associated transc 98.7 2.2E-09 7.7E-14 89.4 -0.7 52 184-238 12-71 (76)
136 4dov_A ORC1, origin recognitio 98.6 2.2E-08 7.4E-13 93.4 5.8 95 266-362 54-160 (163)
137 1we9_A PHD finger family prote 98.6 6.5E-09 2.2E-13 83.5 2.0 54 185-238 3-59 (64)
138 1wew_A DNA-binding family prot 98.6 6.6E-09 2.3E-13 86.8 1.8 52 184-238 12-73 (78)
139 3ql9_A Transcriptional regulat 98.6 1.4E-09 4.7E-14 98.6 -2.9 54 184-239 53-113 (129)
140 3o7a_A PHD finger protein 13 v 98.6 7.9E-09 2.7E-13 79.0 0.9 47 188-236 4-51 (52)
141 4ft4_B DNA (cytosine-5)-methyl 98.6 6.2E-09 2.1E-13 126.5 0.5 99 267-365 74-183 (784)
142 2ysm_A Myeloid/lymphoid or mix 98.6 1.7E-08 5.9E-13 90.9 3.2 50 186-235 5-55 (111)
143 2w58_A DNAI, primosome compone 98.6 4.8E-08 1.6E-12 98.1 6.1 101 488-619 55-158 (202)
144 2vpb_A Hpygo1, pygopus homolog 98.5 9.4E-09 3.2E-13 82.1 -2.1 48 186-235 6-64 (65)
145 3kqi_A GRC5, PHD finger protei 98.4 1.9E-08 6.6E-13 83.3 -0.3 51 185-238 7-62 (75)
146 2xb1_A Pygopus homolog 2, B-ce 98.4 3.1E-08 1.1E-12 87.5 -0.1 48 189-238 4-62 (105)
147 1wep_A PHF8; structural genomi 98.4 2E-08 6.9E-13 84.2 -1.5 50 186-238 10-64 (79)
148 4akg_A Glutathione S-transfera 98.4 1.1E-05 3.9E-10 107.3 22.1 146 468-657 630-793 (2695)
149 1z6t_A APAF-1, apoptotic prote 98.3 9.4E-06 3.2E-10 95.3 19.0 166 458-659 122-301 (591)
150 2ri7_A Nucleosome-remodeling f 98.3 2.7E-08 9.3E-13 97.4 -2.6 53 185-238 5-60 (174)
151 2a5y_B CED-4; apoptosis; HET: 98.3 9.6E-06 3.3E-10 94.3 18.4 187 463-689 131-336 (549)
152 3vkg_A Dynein heavy chain, cyt 98.3 1.8E-06 6.1E-11 115.4 11.7 161 469-658 1290-1470(3245)
153 2qgz_A Helicase loader, putati 98.2 9.5E-07 3.2E-11 94.8 6.4 38 487-531 152-190 (308)
154 2kgg_A Histone demethylase jar 98.2 1.2E-07 4E-12 72.4 -0.5 43 191-235 5-52 (52)
155 1tue_A Replication protein E1; 98.2 1.4E-06 5E-11 86.0 6.9 39 473-512 45-83 (212)
156 3sfz_A APAF-1, apoptotic pepti 98.1 2.5E-05 8.7E-10 99.7 18.2 170 458-659 122-301 (1249)
157 1u0j_A DNA replication protein 98.1 2.3E-05 7.9E-10 81.1 13.9 138 470-656 87-250 (267)
158 3kv5_D JMJC domain-containing 98.0 5.5E-07 1.9E-11 101.4 -2.3 51 185-238 34-89 (488)
159 2kwj_A Zinc finger protein DPF 97.8 1.6E-06 5.4E-11 78.1 -1.1 47 189-235 2-59 (114)
160 2r2a_A Uncharacterized protein 97.8 1.6E-05 5.6E-10 79.2 6.1 61 577-643 87-152 (199)
161 3kv4_A PHD finger protein 8; e 97.8 9.8E-07 3.3E-11 97.8 -4.1 48 188-238 5-57 (447)
162 1vt4_I APAF-1 related killer D 97.8 0.00023 7.8E-09 86.1 15.7 164 461-658 129-312 (1221)
163 3lqh_A Histone-lysine N-methyl 97.7 3.8E-06 1.3E-10 81.6 -0.3 48 189-238 3-64 (183)
164 1wil_A KIAA1045 protein; ring 97.7 6.7E-06 2.3E-10 66.7 0.4 52 187-238 14-77 (89)
165 3pur_A Lysine-specific demethy 97.7 7.3E-06 2.5E-10 91.1 0.7 37 200-238 56-95 (528)
166 3upu_A ATP-dependent DNA helic 97.7 0.00019 6.6E-09 81.3 12.3 58 454-514 15-72 (459)
167 3v43_A Histone acetyltransfera 97.6 5.4E-06 1.8E-10 74.4 -0.9 52 188-239 5-67 (112)
168 2vhj_A Ntpase P4, P4; non- hyd 97.6 6.2E-05 2.1E-09 79.8 6.9 25 486-510 122-146 (331)
169 3vkg_A Dynein heavy chain, cyt 97.6 0.0023 7.9E-08 86.2 22.0 143 469-656 590-752 (3245)
170 1ye8_A Protein THEP1, hypothet 97.5 0.00045 1.5E-08 67.4 11.5 74 577-657 99-176 (178)
171 2fl7_A Regulatory protein SIR3 97.4 4.5E-05 1.5E-09 75.7 2.7 77 284-360 87-188 (232)
172 1m4z_A Origin recognition comp 97.4 3.9E-05 1.3E-09 76.4 2.2 77 284-360 87-188 (238)
173 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00076 2.6E-08 68.3 11.0 45 480-531 16-60 (235)
174 3e1s_A Exodeoxyribonuclease V, 97.3 0.00046 1.6E-08 80.2 10.1 114 487-619 204-317 (574)
175 2orw_A Thymidine kinase; TMTK, 97.3 0.00035 1.2E-08 68.7 7.3 27 487-513 3-29 (184)
176 2cvh_A DNA repair and recombin 97.2 0.001 3.6E-08 66.7 10.1 53 479-541 12-64 (220)
177 2zr9_A Protein RECA, recombina 97.2 0.00068 2.3E-08 73.7 8.4 89 482-591 56-153 (349)
178 3kw6_A 26S protease regulatory 97.2 0.00034 1.2E-08 58.2 4.6 74 642-731 1-75 (78)
179 1n0w_A DNA repair protein RAD5 97.2 0.001 3.6E-08 67.9 9.3 103 479-592 16-134 (243)
180 2b8t_A Thymidine kinase; deoxy 97.1 0.00076 2.6E-08 68.2 7.9 28 487-514 12-39 (223)
181 3cmu_A Protein RECA, recombina 97.1 0.00086 2.9E-08 86.7 10.1 88 483-591 1423-1519(2050)
182 1xp8_A RECA protein, recombina 97.1 0.0038 1.3E-07 68.1 13.4 89 482-591 69-166 (366)
183 2dr3_A UPF0273 protein PH0284; 97.1 0.0033 1.1E-07 64.2 12.1 46 480-532 16-61 (247)
184 3hr8_A Protein RECA; alpha and 97.0 0.0015 5.1E-08 70.8 9.6 89 482-591 56-153 (356)
185 4a74_A DNA repair and recombin 97.0 0.00085 2.9E-08 67.9 6.5 54 482-536 20-73 (231)
186 2krk_A 26S protease regulatory 97.0 0.00043 1.5E-08 58.7 3.5 76 640-731 7-83 (86)
187 2iut_A DNA translocase FTSK; n 96.9 0.0095 3.3E-07 68.1 15.3 74 577-654 343-420 (574)
188 3io5_A Recombination and repai 96.9 0.0047 1.6E-07 65.2 11.9 92 482-591 24-125 (333)
189 3cmw_A Protein RECA, recombina 96.9 0.0027 9.2E-08 81.3 11.0 93 482-592 1077-1175(1706)
190 1w36_D RECD, exodeoxyribonucle 96.8 0.0066 2.3E-07 71.0 13.0 27 487-513 164-190 (608)
191 2fz4_A DNA repair protein RAD2 96.8 0.0081 2.8E-07 61.4 11.9 40 463-511 93-132 (237)
192 2z43_A DNA repair and recombin 96.7 0.0032 1.1E-07 67.7 8.9 63 479-542 99-161 (324)
193 2r6a_A DNAB helicase, replicat 96.7 0.0086 2.9E-07 67.5 12.7 53 483-543 199-251 (454)
194 2r8r_A Sensor protein; KDPD, P 96.7 0.0073 2.5E-07 60.7 10.7 27 488-514 7-33 (228)
195 1u94_A RECA protein, recombina 96.7 0.0066 2.2E-07 65.9 11.1 89 482-591 58-155 (356)
196 3lda_A DNA repair protein RAD5 96.7 0.003 1E-07 69.7 8.4 61 476-537 167-227 (400)
197 2ehv_A Hypothetical protein PH 96.7 0.0026 8.9E-08 65.2 7.4 28 483-510 26-53 (251)
198 1pzn_A RAD51, DNA repair and r 96.7 0.0034 1.2E-07 68.1 8.6 58 478-536 122-179 (349)
199 3bh0_A DNAB-like replicative h 96.6 0.013 4.3E-07 62.7 12.7 56 482-546 63-118 (315)
200 1g5t_A COB(I)alamin adenosyltr 96.6 0.0009 3.1E-08 65.8 3.1 122 487-619 28-162 (196)
201 1w4r_A Thymidine kinase; type 96.6 0.0019 6.6E-08 63.3 5.2 37 487-531 20-57 (195)
202 4bbq_A Lysine-specific demethy 96.6 0.0006 2E-08 61.6 1.4 39 200-238 73-115 (117)
203 2i3b_A HCR-ntpase, human cance 96.6 0.0071 2.4E-07 59.4 9.3 75 576-657 104-184 (189)
204 3kl4_A SRP54, signal recogniti 96.6 0.017 5.9E-07 64.1 13.4 80 448-534 51-137 (433)
205 2q6t_A DNAB replication FORK h 96.6 0.012 4E-07 66.2 12.4 56 482-545 195-250 (444)
206 3dm5_A SRP54, signal recogniti 96.5 0.11 3.7E-06 57.7 19.0 72 457-535 64-141 (443)
207 2ius_A DNA translocase FTSK; n 96.4 0.011 3.9E-07 66.9 11.2 73 579-655 299-375 (512)
208 1v5w_A DMC1, meiotic recombina 96.4 0.0093 3.2E-07 64.5 10.2 63 479-542 114-176 (343)
209 3rsn_A SET1/ASH2 histone methy 96.4 0.0011 3.7E-08 63.1 2.3 49 188-237 5-59 (177)
210 2i1q_A DNA repair and recombin 96.4 0.0082 2.8E-07 64.3 9.6 105 478-591 89-218 (322)
211 3vlf_B 26S protease regulatory 96.4 0.0019 6.6E-08 54.9 3.6 72 645-732 2-74 (88)
212 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.2 0.0019 6.5E-08 60.0 2.9 38 202-239 2-46 (140)
213 3llm_A ATP-dependent RNA helic 96.2 0.015 5.3E-07 59.1 9.8 24 487-510 76-99 (235)
214 1cr0_A DNA primase/helicase; R 96.1 0.018 6.1E-07 60.8 10.3 28 486-513 34-61 (296)
215 1qhx_A CPT, protein (chloramph 96.1 0.0034 1.2E-07 60.7 4.3 26 487-512 3-28 (178)
216 3cmu_A Protein RECA, recombina 96.1 0.012 4.1E-07 76.4 9.8 88 483-591 1077-1173(2050)
217 2zts_A Putative uncharacterize 96.0 0.011 3.8E-07 60.3 7.8 55 479-541 22-76 (251)
218 3umf_A Adenylate kinase; rossm 95.9 0.014 4.7E-07 58.7 7.3 26 487-512 29-54 (217)
219 3tlx_A Adenylate kinase 2; str 95.9 0.023 7.9E-07 58.1 9.3 26 487-512 29-54 (243)
220 3aji_B S6C, proteasome (prosom 95.8 0.0024 8.3E-08 53.6 1.2 74 644-733 1-75 (83)
221 2j9r_A Thymidine kinase; TK1, 95.7 0.016 5.4E-07 57.7 6.9 27 487-513 28-54 (214)
222 1gvn_B Zeta; postsegregational 95.7 0.011 3.6E-07 62.4 5.9 26 487-512 33-58 (287)
223 3sr0_A Adenylate kinase; phosp 95.7 0.019 6.7E-07 57.1 7.5 24 489-512 2-25 (206)
224 3trf_A Shikimate kinase, SK; a 95.7 0.0051 1.7E-07 59.9 3.1 26 487-512 5-30 (185)
225 3vaa_A Shikimate kinase, SK; s 95.6 0.0057 2E-07 60.5 3.5 26 487-512 25-50 (199)
226 3bgw_A DNAB-like replicative h 95.6 0.057 2E-06 60.4 11.9 42 483-531 193-234 (444)
227 2p5t_B PEZT; postsegregational 95.6 0.011 3.6E-07 61.1 5.4 59 465-533 7-68 (253)
228 4eun_A Thermoresistant glucoki 95.6 0.012 4.1E-07 58.2 5.4 37 487-535 29-65 (200)
229 1sky_E F1-ATPase, F1-ATP synth 95.5 0.024 8.3E-07 63.2 8.3 142 487-641 151-331 (473)
230 3fe2_A Probable ATP-dependent 95.5 0.052 1.8E-06 55.2 10.4 37 577-614 176-213 (242)
231 1q57_A DNA primase/helicase; d 95.5 0.053 1.8E-06 61.9 11.4 53 483-543 238-290 (503)
232 2gxq_A Heat resistant RNA depe 95.5 0.021 7.1E-07 56.4 6.9 27 577-603 144-171 (207)
233 1xx6_A Thymidine kinase; NESG, 95.5 0.02 6.7E-07 56.3 6.5 27 487-513 8-34 (191)
234 3a1b_A DNA (cytosine-5)-methyl 95.4 0.0016 5.4E-08 60.7 -1.3 53 184-238 75-135 (159)
235 1knq_A Gluconate kinase; ALFA/ 95.4 0.011 3.8E-07 56.9 4.6 37 487-535 8-44 (175)
236 2ga8_A Hypothetical 39.9 kDa p 95.4 0.019 6.5E-07 61.7 6.6 47 466-514 5-51 (359)
237 3iij_A Coilin-interacting nucl 95.4 0.0075 2.6E-07 58.5 3.2 26 487-512 11-36 (180)
238 1kag_A SKI, shikimate kinase I 95.4 0.0081 2.8E-07 57.7 3.4 26 487-512 4-29 (173)
239 3kb2_A SPBC2 prophage-derived 95.3 0.0092 3.1E-07 57.1 3.6 24 489-512 3-26 (173)
240 1qde_A EIF4A, translation init 95.3 0.027 9.3E-07 56.5 7.1 28 576-603 154-182 (224)
241 3b6e_A Interferon-induced heli 95.3 0.11 3.8E-06 51.3 11.6 42 462-512 32-73 (216)
242 1kht_A Adenylate kinase; phosp 95.2 0.012 4.1E-07 57.4 4.2 27 487-513 3-29 (192)
243 4a1f_A DNAB helicase, replicat 95.2 0.12 4.2E-06 55.3 12.3 54 485-547 44-97 (338)
244 1rz3_A Hypothetical protein rb 95.2 0.018 6.3E-07 56.9 5.5 47 464-513 2-48 (201)
245 4b3f_X DNA-binding protein smu 95.2 0.015 5.2E-07 68.6 5.6 41 465-513 191-231 (646)
246 1y63_A LMAJ004144AAA protein; 95.2 0.01 3.5E-07 57.9 3.4 26 487-512 10-36 (184)
247 3cmw_A Protein RECA, recombina 95.1 0.029 9.9E-07 71.9 8.3 97 476-593 1419-1525(1706)
248 2z0h_A DTMP kinase, thymidylat 95.1 0.039 1.3E-06 54.0 7.6 25 489-513 2-26 (197)
249 2iyv_A Shikimate kinase, SK; t 95.1 0.01 3.5E-07 57.7 3.1 25 488-512 3-27 (184)
250 1via_A Shikimate kinase; struc 95.1 0.014 4.9E-07 56.2 4.1 24 489-512 6-29 (175)
251 2rhm_A Putative kinase; P-loop 95.0 0.015 5E-07 56.9 4.1 26 487-512 5-30 (193)
252 3ice_A Transcription terminati 95.0 0.026 8.8E-07 61.1 6.1 37 487-528 174-210 (422)
253 1zuh_A Shikimate kinase; alpha 95.0 0.016 5.6E-07 55.3 4.2 26 487-512 7-32 (168)
254 1zp6_A Hypothetical protein AT 95.0 0.009 3.1E-07 58.4 2.4 24 487-510 9-32 (191)
255 3t61_A Gluconokinase; PSI-biol 94.9 0.014 4.7E-07 57.8 3.6 26 487-512 18-43 (202)
256 3dkp_A Probable ATP-dependent 94.9 0.06 2.1E-06 54.8 8.5 19 487-505 66-84 (245)
257 3c8u_A Fructokinase; YP_612366 94.8 0.028 9.5E-07 55.9 5.7 43 486-533 21-63 (208)
258 1vec_A ATP-dependent RNA helic 94.8 0.058 2E-06 53.1 8.0 27 577-603 146-173 (206)
259 1nks_A Adenylate kinase; therm 94.8 0.016 5.4E-07 56.5 3.6 25 489-513 3-27 (194)
260 1kgd_A CASK, peripheral plasma 94.7 0.017 5.8E-07 56.1 3.7 26 487-512 5-30 (180)
261 3uie_A Adenylyl-sulfate kinase 94.7 0.019 6.6E-07 56.7 4.1 26 487-512 25-50 (200)
262 2px0_A Flagellar biosynthesis 94.7 0.18 6.1E-06 53.1 11.8 41 487-533 105-145 (296)
263 2ze6_A Isopentenyl transferase 94.7 0.015 5.1E-07 60.0 3.3 24 489-512 3-26 (253)
264 2pl3_A Probable ATP-dependent 94.7 0.11 3.8E-06 52.4 9.9 28 577-604 171-199 (236)
265 1hv8_A Putative ATP-dependent 94.7 0.075 2.6E-06 57.2 9.1 39 465-511 30-68 (367)
266 3lw7_A Adenylate kinase relate 94.7 0.019 6.6E-07 54.7 3.8 23 489-512 3-25 (179)
267 3cm0_A Adenylate kinase; ATP-b 94.7 0.018 6E-07 56.0 3.5 26 487-512 4-29 (186)
268 3zvl_A Bifunctional polynucleo 94.6 0.057 1.9E-06 60.0 8.1 26 487-512 258-283 (416)
269 3iuy_A Probable ATP-dependent 94.6 0.068 2.3E-06 53.7 8.0 37 577-614 167-204 (228)
270 2pez_A Bifunctional 3'-phospho 94.6 0.023 8E-07 54.9 4.3 39 487-532 5-43 (179)
271 1ly1_A Polynucleotide kinase; 94.6 0.018 6.1E-07 55.4 3.4 22 488-509 3-24 (181)
272 2qor_A Guanylate kinase; phosp 94.6 0.018 6.1E-07 57.1 3.5 26 487-512 12-37 (204)
273 1ex7_A Guanylate kinase; subst 94.6 0.02 6.9E-07 56.0 3.7 25 488-512 2-26 (186)
274 1tev_A UMP-CMP kinase; ploop, 94.6 0.022 7.6E-07 55.5 4.1 26 487-512 3-28 (196)
275 2cdn_A Adenylate kinase; phosp 94.6 0.024 8.2E-07 55.9 4.3 26 487-512 20-45 (201)
276 1tf7_A KAIC; homohexamer, hexa 94.6 0.092 3.2E-06 60.2 9.8 43 483-532 277-319 (525)
277 3ly5_A ATP-dependent RNA helic 94.5 0.078 2.7E-06 54.8 8.4 27 577-603 201-228 (262)
278 1q0u_A Bstdead; DEAD protein, 94.5 0.045 1.5E-06 54.7 6.3 28 577-604 150-178 (219)
279 1e6c_A Shikimate kinase; phosp 94.5 0.026 8.8E-07 54.0 4.3 25 488-512 3-27 (173)
280 2c95_A Adenylate kinase 1; tra 94.5 0.026 8.9E-07 55.2 4.3 26 487-512 9-34 (196)
281 1odf_A YGR205W, hypothetical 3 94.4 0.053 1.8E-06 57.0 6.8 46 469-514 13-58 (290)
282 2bwj_A Adenylate kinase 5; pho 94.4 0.027 9.3E-07 55.2 4.4 26 487-512 12-37 (199)
283 1aky_A Adenylate kinase; ATP:A 94.4 0.028 9.6E-07 56.4 4.4 26 487-512 4-29 (220)
284 2plr_A DTMP kinase, probable t 94.3 0.022 7.6E-07 56.4 3.5 26 487-512 4-29 (213)
285 3bor_A Human initiation factor 94.3 0.042 1.4E-06 55.8 5.7 27 577-603 173-200 (237)
286 3t1o_A Gliding protein MGLA; G 94.3 0.046 1.6E-06 53.1 5.8 24 488-511 15-38 (198)
287 2wwf_A Thymidilate kinase, put 94.3 0.027 9.1E-07 55.9 4.0 27 487-513 10-36 (212)
288 3vkw_A Replicase large subunit 94.2 0.032 1.1E-06 61.8 4.8 23 487-509 161-183 (446)
289 1ak2_A Adenylate kinase isoenz 94.2 0.033 1.1E-06 56.4 4.6 26 487-512 16-41 (233)
290 3tau_A Guanylate kinase, GMP k 94.2 0.022 7.4E-07 56.8 3.1 26 487-512 8-33 (208)
291 1j8m_F SRP54, signal recogniti 94.2 0.52 1.8E-05 49.6 13.8 42 487-535 98-139 (297)
292 3be4_A Adenylate kinase; malar 94.1 0.034 1.2E-06 55.6 4.5 26 487-512 5-30 (217)
293 2vli_A Antibiotic resistance p 94.1 0.017 5.9E-07 55.8 2.0 26 487-512 5-30 (183)
294 3e70_C DPA, signal recognition 94.1 0.083 2.8E-06 56.5 7.5 28 487-514 129-156 (328)
295 2yvu_A Probable adenylyl-sulfa 94.1 0.033 1.1E-06 54.2 4.1 27 487-513 13-39 (186)
296 2pt5_A Shikimate kinase, SK; a 94.1 0.034 1.2E-06 52.9 4.1 24 489-512 2-25 (168)
297 1nn5_A Similar to deoxythymidy 94.1 0.032 1.1E-06 55.4 4.0 27 487-513 9-35 (215)
298 1rif_A DAR protein, DNA helica 94.0 0.18 6E-06 52.6 9.9 41 463-512 113-153 (282)
299 3crm_A TRNA delta(2)-isopenten 94.0 0.032 1.1E-06 59.3 4.1 26 487-512 5-30 (323)
300 1zd8_A GTP:AMP phosphotransfer 94.0 0.031 1.1E-06 56.4 3.8 26 487-512 7-32 (227)
301 1qf9_A UMP/CMP kinase, protein 94.0 0.034 1.2E-06 54.1 3.9 26 487-512 6-31 (194)
302 1wrb_A DJVLGB; RNA helicase, D 94.0 0.24 8.2E-06 50.5 10.6 27 577-603 174-201 (253)
303 1s2m_A Putative ATP-dependent 94.0 0.14 4.7E-06 56.1 9.3 35 465-508 45-79 (400)
304 3fb4_A Adenylate kinase; psych 93.9 0.03 1E-06 55.8 3.6 24 489-512 2-25 (216)
305 2orv_A Thymidine kinase; TP4A 93.9 0.089 3E-06 52.9 6.8 26 487-512 19-44 (234)
306 1zak_A Adenylate kinase; ATP:A 93.9 0.033 1.1E-06 55.9 3.8 26 487-512 5-30 (222)
307 3pey_A ATP-dependent RNA helic 93.9 0.17 5.8E-06 55.0 9.8 22 487-508 44-65 (395)
308 3tr0_A Guanylate kinase, GMP k 93.9 0.033 1.1E-06 54.9 3.7 25 487-511 7-31 (205)
309 2z0m_A 337AA long hypothetical 93.9 0.12 4E-06 55.0 8.3 24 487-510 31-54 (337)
310 3dl0_A Adenylate kinase; phosp 93.8 0.03 1E-06 55.9 3.3 24 489-512 2-25 (216)
311 3ney_A 55 kDa erythrocyte memb 93.8 0.035 1.2E-06 54.7 3.7 27 486-512 18-44 (197)
312 1lvg_A Guanylate kinase, GMP k 93.8 0.035 1.2E-06 54.8 3.7 26 487-512 4-29 (198)
313 3a00_A Guanylate kinase, GMP k 93.7 0.033 1.1E-06 54.3 3.3 25 488-512 2-26 (186)
314 1svm_A Large T antigen; AAA+ f 93.7 0.074 2.5E-06 58.0 6.3 27 486-512 168-194 (377)
315 2bbw_A Adenylate kinase 4, AK4 93.7 0.04 1.4E-06 56.4 4.0 26 487-512 27-52 (246)
316 2j41_A Guanylate kinase; GMP, 93.7 0.031 1.1E-06 55.1 3.1 25 487-511 6-30 (207)
317 2oxc_A Probable ATP-dependent 93.6 0.13 4.6E-06 51.6 7.9 25 487-511 61-86 (230)
318 3nwj_A ATSK2; P loop, shikimat 93.6 0.044 1.5E-06 56.3 4.2 26 487-512 48-73 (250)
319 2jaq_A Deoxyguanosine kinase; 93.6 0.04 1.4E-06 54.2 3.7 24 489-512 2-25 (205)
320 3fmo_B ATP-dependent RNA helic 93.6 0.11 3.7E-06 54.9 7.3 25 487-511 131-156 (300)
321 3ber_A Probable ATP-dependent 93.6 0.25 8.5E-06 50.5 9.9 28 577-604 186-214 (249)
322 2pbr_A DTMP kinase, thymidylat 93.6 0.049 1.7E-06 53.0 4.3 25 489-513 2-26 (195)
323 1t6n_A Probable ATP-dependent 93.6 0.38 1.3E-05 47.8 11.0 23 488-510 52-74 (220)
324 1ukz_A Uridylate kinase; trans 93.5 0.041 1.4E-06 54.2 3.7 26 487-512 15-40 (203)
325 2xxa_A Signal recognition part 93.5 0.76 2.6E-05 51.0 14.3 43 487-535 100-142 (433)
326 2xau_A PRE-mRNA-splicing facto 93.5 0.19 6.6E-06 60.3 10.1 35 468-510 98-132 (773)
327 2bdt_A BH3686; alpha-beta prot 93.5 0.034 1.2E-06 54.2 2.9 22 488-509 3-24 (189)
328 1cke_A CK, MSSA, protein (cyti 93.4 0.055 1.9E-06 54.3 4.5 25 488-512 6-30 (227)
329 3a4m_A L-seryl-tRNA(SEC) kinas 93.4 0.044 1.5E-06 56.6 3.9 27 487-513 4-30 (260)
330 2db3_A ATP-dependent RNA helic 93.4 0.31 1E-05 54.3 11.0 29 576-604 202-231 (434)
331 2xb4_A Adenylate kinase; ATP-b 93.4 0.052 1.8E-06 54.6 4.1 24 489-512 2-25 (223)
332 1m7g_A Adenylylsulfate kinase; 93.3 0.052 1.8E-06 54.0 4.1 38 487-530 25-62 (211)
333 1s96_A Guanylate kinase, GMP k 93.3 0.047 1.6E-06 54.9 3.6 26 487-512 16-41 (219)
334 3eiq_A Eukaryotic initiation f 93.3 0.088 3E-06 57.9 6.3 37 577-614 183-220 (414)
335 3e2i_A Thymidine kinase; Zn-bi 93.3 0.051 1.7E-06 54.0 3.7 41 577-623 101-141 (219)
336 2v54_A DTMP kinase, thymidylat 93.2 0.04 1.4E-06 54.3 3.0 25 487-511 4-28 (204)
337 4a4z_A Antiviral helicase SKI2 93.2 0.15 5E-06 63.0 8.6 91 487-592 54-162 (997)
338 1kao_A RAP2A; GTP-binding prot 93.2 0.39 1.3E-05 44.6 9.9 23 488-510 4-26 (167)
339 3foz_A TRNA delta(2)-isopenten 93.1 0.048 1.7E-06 57.4 3.6 26 487-512 10-35 (316)
340 1e4v_A Adenylate kinase; trans 93.1 0.05 1.7E-06 54.2 3.6 24 489-512 2-25 (214)
341 3a8t_A Adenylate isopentenyltr 93.0 0.04 1.4E-06 58.8 2.8 26 487-512 40-65 (339)
342 3exa_A TRNA delta(2)-isopenten 92.9 0.052 1.8E-06 57.2 3.4 26 487-512 3-28 (322)
343 2gk6_A Regulator of nonsense t 92.9 0.072 2.5E-06 62.4 5.0 40 465-513 182-221 (624)
344 2if2_A Dephospho-COA kinase; a 92.9 0.059 2E-06 53.1 3.7 23 489-512 3-25 (204)
345 1htw_A HI0065; nucleotide-bind 92.9 0.061 2.1E-06 51.0 3.6 25 487-511 33-57 (158)
346 3r20_A Cytidylate kinase; stru 92.8 0.082 2.8E-06 53.5 4.6 26 487-512 9-34 (233)
347 2v6i_A RNA helicase; membrane, 92.8 0.097 3.3E-06 58.4 5.6 26 487-512 2-28 (431)
348 2fwr_A DNA repair protein RAD2 92.7 0.27 9.2E-06 55.3 9.4 40 463-511 93-132 (472)
349 2eyu_A Twitching motility prot 92.7 0.069 2.3E-06 55.2 4.0 27 487-513 25-51 (261)
350 2xgj_A ATP-dependent RNA helic 92.7 0.46 1.6E-05 58.7 11.9 92 487-593 101-208 (1010)
351 1znw_A Guanylate kinase, GMP k 92.7 0.066 2.3E-06 53.1 3.7 26 487-512 20-45 (207)
352 1z6g_A Guanylate kinase; struc 92.6 0.062 2.1E-06 53.9 3.5 25 487-511 23-47 (218)
353 2j0s_A ATP-dependent RNA helic 92.6 0.46 1.6E-05 52.1 10.9 38 576-614 178-216 (410)
354 3b9q_A Chloroplast SRP recepto 92.5 0.27 9.3E-06 51.8 8.4 28 487-514 100-127 (302)
355 2zj8_A DNA helicase, putative 92.5 0.24 8E-06 59.2 8.8 38 487-531 39-77 (720)
356 4e22_A Cytidylate kinase; P-lo 92.5 0.086 3E-06 54.1 4.4 26 487-512 27-52 (252)
357 2v3c_C SRP54, signal recogniti 92.5 0.32 1.1E-05 54.1 9.2 40 487-533 99-138 (432)
358 3jvv_A Twitching mobility prot 92.5 0.1 3.4E-06 56.6 5.0 28 487-514 123-150 (356)
359 2v9p_A Replication protein E1; 92.4 0.083 2.8E-06 55.8 4.2 26 486-511 125-150 (305)
360 3cr8_A Sulfate adenylyltranfer 92.3 0.14 4.7E-06 58.8 6.2 63 447-513 333-395 (552)
361 2ged_A SR-beta, signal recogni 92.3 0.12 4.1E-06 50.0 5.0 24 487-510 48-71 (193)
362 4gp7_A Metallophosphoesterase; 92.2 0.064 2.2E-06 51.5 2.9 20 487-506 9-28 (171)
363 2dzn_B 26S protease regulatory 92.2 0.0085 2.9E-07 50.1 -3.0 67 648-730 2-69 (82)
364 1fuu_A Yeast initiation factor 92.2 0.15 5.1E-06 55.5 6.1 28 576-603 161-189 (394)
365 3asz_A Uridine kinase; cytidin 92.2 0.082 2.8E-06 52.4 3.7 26 487-512 6-31 (211)
366 3lxw_A GTPase IMAP family memb 92.1 0.26 8.8E-06 50.3 7.5 24 487-510 21-44 (247)
367 2wjy_A Regulator of nonsense t 92.1 0.1 3.6E-06 62.7 5.1 40 465-513 358-397 (800)
368 1gtv_A TMK, thymidylate kinase 92.1 0.048 1.6E-06 54.1 1.8 25 489-513 2-26 (214)
369 3ake_A Cytidylate kinase; CMP 92.1 0.099 3.4E-06 51.5 4.1 24 489-512 4-27 (208)
370 3d3q_A TRNA delta(2)-isopenten 92.0 0.1 3.6E-06 55.7 4.4 25 488-512 8-32 (340)
371 3eph_A TRNA isopentenyltransfe 92.0 0.095 3.2E-06 57.2 4.2 25 488-512 3-27 (409)
372 1xjc_A MOBB protein homolog; s 92.0 0.11 3.7E-06 49.8 4.1 27 488-514 5-31 (169)
373 1p9r_A General secretion pathw 92.0 0.12 4.2E-06 57.1 5.1 27 487-513 167-193 (418)
374 1uj2_A Uridine-cytidine kinase 92.0 0.074 2.5E-06 54.6 3.2 27 487-513 22-48 (252)
375 3lnc_A Guanylate kinase, GMP k 92.0 0.063 2.2E-06 54.2 2.6 25 487-511 27-52 (231)
376 2qt1_A Nicotinamide riboside k 91.9 0.079 2.7E-06 52.4 3.2 25 487-511 21-45 (207)
377 2va8_A SSO2462, SKI2-type heli 91.7 0.47 1.6E-05 56.5 10.2 38 487-531 46-84 (715)
378 2z83_A Helicase/nucleoside tri 91.7 0.072 2.5E-06 60.0 2.9 52 487-550 21-73 (459)
379 2qmh_A HPR kinase/phosphorylas 91.7 0.07 2.4E-06 52.3 2.4 26 487-512 34-59 (205)
380 1nlf_A Regulatory protein REPA 91.7 0.11 3.7E-06 54.2 4.1 27 486-512 29-55 (279)
381 2og2_A Putative signal recogni 91.7 0.32 1.1E-05 52.5 7.9 28 487-514 157-184 (359)
382 2grj_A Dephospho-COA kinase; T 91.6 0.12 4.2E-06 50.6 4.1 25 488-512 13-37 (192)
383 1g8f_A Sulfate adenylyltransfe 91.6 0.16 5.6E-06 57.4 5.6 62 448-513 360-421 (511)
384 4eaq_A DTMP kinase, thymidylat 91.5 0.11 3.8E-06 52.4 3.8 26 487-512 26-51 (229)
385 2j37_W Signal recognition part 91.5 0.5 1.7E-05 53.5 9.4 68 460-534 67-141 (504)
386 1np6_A Molybdopterin-guanine d 91.5 0.13 4.4E-06 49.6 4.0 27 487-513 6-32 (174)
387 3fmp_B ATP-dependent RNA helic 91.4 0.25 8.6E-06 55.7 7.1 18 487-504 131-148 (479)
388 1vma_A Cell division protein F 91.4 0.36 1.2E-05 51.0 7.7 27 487-513 104-130 (306)
389 2ewv_A Twitching motility prot 91.4 0.12 3.9E-06 56.5 4.0 28 487-514 136-163 (372)
390 3l9o_A ATP-dependent RNA helic 91.3 0.19 6.4E-06 62.8 6.3 25 487-511 199-223 (1108)
391 3aez_A Pantothenate kinase; tr 91.3 0.26 8.9E-06 52.3 6.6 27 487-513 90-116 (312)
392 3tqc_A Pantothenate kinase; bi 91.3 0.27 9.4E-06 52.2 6.7 26 487-512 92-117 (321)
393 2p6r_A Afuhel308 helicase; pro 91.3 0.26 8.7E-06 58.7 7.2 22 487-508 40-61 (702)
394 3fht_A ATP-dependent RNA helic 91.1 0.33 1.1E-05 53.1 7.5 25 487-511 64-89 (412)
395 3i5x_A ATP-dependent RNA helic 91.1 1.4 4.9E-05 50.5 13.2 19 487-505 111-129 (563)
396 1jjv_A Dephospho-COA kinase; P 91.1 0.11 3.8E-06 51.2 3.3 21 489-509 4-24 (206)
397 1ltq_A Polynucleotide kinase; 91.0 0.11 3.7E-06 54.7 3.3 24 488-511 3-26 (301)
398 1q3t_A Cytidylate kinase; nucl 91.0 0.17 5.7E-06 51.3 4.5 26 487-512 16-41 (236)
399 2eyq_A TRCF, transcription-rep 91.0 1.2 4.1E-05 55.9 13.2 41 465-508 605-645 (1151)
400 4gne_A Histone-lysine N-methyl 91.0 0.075 2.6E-06 46.5 1.6 39 190-231 60-98 (107)
401 2xzl_A ATP-dependent helicase 91.0 0.14 4.8E-06 61.6 4.5 26 488-513 376-401 (802)
402 2il1_A RAB12; G-protein, GDP, 90.9 0.44 1.5E-05 46.1 7.4 24 488-511 27-50 (192)
403 1ls1_A Signal recognition part 90.9 0.97 3.3E-05 47.4 10.5 28 487-514 98-125 (295)
404 3fho_A ATP-dependent RNA helic 90.8 0.19 6.4E-06 57.3 5.3 25 487-511 158-183 (508)
405 1rj9_A FTSY, signal recognitio 90.8 0.16 5.4E-06 53.7 4.3 27 487-513 102-128 (304)
406 3tqf_A HPR(Ser) kinase; transf 90.7 0.13 4.5E-06 49.1 3.2 24 487-510 16-39 (181)
407 2oap_1 GSPE-2, type II secreti 90.6 0.14 4.7E-06 58.3 3.8 26 487-512 260-285 (511)
408 2h92_A Cytidylate kinase; ross 90.5 0.18 6E-06 50.2 4.1 26 487-512 3-28 (219)
409 2jeo_A Uridine-cytidine kinase 90.4 0.16 5.6E-06 51.7 3.9 26 487-512 25-50 (245)
410 2wsm_A Hydrogenase expression/ 90.4 0.21 7.2E-06 49.6 4.6 26 487-512 30-55 (221)
411 1vht_A Dephospho-COA kinase; s 90.4 0.16 5.6E-06 50.5 3.8 23 487-509 4-26 (218)
412 3tif_A Uncharacterized ABC tra 90.4 0.14 4.6E-06 52.1 3.1 26 487-512 31-56 (235)
413 1sq5_A Pantothenate kinase; P- 90.4 0.32 1.1E-05 51.5 6.2 26 487-512 80-105 (308)
414 3sqw_A ATP-dependent RNA helic 90.3 2 6.8E-05 49.6 13.5 35 465-506 45-79 (579)
415 2pv0_B DNA (cytosine-5)-methyl 90.3 0.022 7.7E-07 61.1 -2.8 52 185-238 90-149 (386)
416 1uf9_A TT1252 protein; P-loop, 90.3 0.14 4.8E-06 50.1 3.2 24 487-510 8-31 (203)
417 2hf9_A Probable hydrogenase ni 90.2 0.28 9.4E-06 48.9 5.4 26 487-512 38-63 (226)
418 2whx_A Serine protease/ntpase/ 90.2 0.091 3.1E-06 61.4 1.9 26 487-512 186-212 (618)
419 2pcj_A ABC transporter, lipopr 90.1 0.13 4.6E-06 51.7 2.9 26 487-512 30-55 (224)
420 2jlq_A Serine protease subunit 90.1 0.13 4.3E-06 57.8 2.8 26 487-512 19-45 (451)
421 1zu4_A FTSY; GTPase, signal re 90.0 0.51 1.8E-05 50.1 7.4 28 487-514 105-132 (320)
422 2yhs_A FTSY, cell division pro 90.0 0.17 6E-06 56.7 3.9 28 487-514 293-320 (503)
423 2cbz_A Multidrug resistance-as 90.0 0.15 5.2E-06 51.8 3.1 26 487-512 31-56 (237)
424 2ykg_A Probable ATP-dependent 89.9 1.7 5.9E-05 51.3 12.8 39 465-512 15-53 (696)
425 2f1r_A Molybdopterin-guanine d 89.8 0.15 5.1E-06 49.0 2.8 26 488-513 3-28 (171)
426 3tbk_A RIG-I helicase domain; 89.7 1.8 6.2E-05 49.1 12.5 26 487-512 19-44 (555)
427 3thx_B DNA mismatch repair pro 89.7 0.51 1.8E-05 57.3 8.0 24 487-510 673-696 (918)
428 2i4i_A ATP-dependent RNA helic 89.7 1.3 4.5E-05 48.3 10.9 27 577-603 175-202 (417)
429 3thx_A DNA mismatch repair pro 89.7 0.32 1.1E-05 59.3 6.1 23 487-509 662-684 (934)
430 1tq4_A IIGP1, interferon-induc 89.7 0.31 1E-05 53.7 5.5 40 468-511 54-93 (413)
431 4edh_A DTMP kinase, thymidylat 89.6 0.22 7.6E-06 49.6 4.0 27 487-513 6-32 (213)
432 3b85_A Phosphate starvation-in 89.6 0.15 5.1E-06 50.7 2.7 24 487-510 22-45 (208)
433 3r7w_A Gtpase1, GTP-binding pr 89.5 1.2 4.3E-05 46.8 10.0 23 488-510 4-26 (307)
434 1b0u_A Histidine permease; ABC 89.4 0.17 6E-06 52.2 3.1 26 487-512 32-57 (262)
435 1sgw_A Putative ABC transporte 89.4 0.17 5.7E-06 50.6 2.9 26 487-512 35-60 (214)
436 3kta_A Chromosome segregation 89.4 0.21 7.1E-06 48.1 3.5 25 488-512 27-51 (182)
437 2f6r_A COA synthase, bifunctio 89.3 0.22 7.4E-06 52.0 3.8 25 487-512 75-99 (281)
438 2d2e_A SUFC protein; ABC-ATPas 89.3 0.21 7.2E-06 51.1 3.6 24 487-510 29-52 (250)
439 2gza_A Type IV secretion syste 89.2 0.26 8.9E-06 53.5 4.5 35 474-512 166-200 (361)
440 3l0o_A Transcription terminati 89.2 0.49 1.7E-05 51.1 6.5 28 487-514 175-202 (427)
441 4a2p_A RIG-I, retinoic acid in 89.2 1.9 6.6E-05 49.0 12.2 26 487-512 22-47 (556)
442 3sop_A Neuronal-specific septi 89.2 0.21 7.2E-06 51.8 3.5 24 489-512 4-27 (270)
443 3lv8_A DTMP kinase, thymidylat 89.1 0.26 8.9E-06 49.9 4.1 28 487-514 27-54 (236)
444 1g6h_A High-affinity branched- 89.1 0.19 6.4E-06 51.8 3.1 26 487-512 33-58 (257)
445 2pze_A Cystic fibrosis transme 89.1 0.19 6.5E-06 50.8 3.0 26 487-512 34-59 (229)
446 1x6v_B Bifunctional 3'-phospho 89.1 0.23 7.8E-06 57.6 4.1 37 487-530 52-88 (630)
447 1m8p_A Sulfate adenylyltransfe 89.1 0.32 1.1E-05 56.1 5.3 27 487-513 396-422 (573)
448 2zu0_C Probable ATP-dependent 89.1 0.22 7.7E-06 51.5 3.6 24 487-510 46-69 (267)
449 2ff7_A Alpha-hemolysin translo 89.0 0.19 6.6E-06 51.3 3.1 26 487-512 35-60 (247)
450 2olj_A Amino acid ABC transpor 89.0 0.2 6.7E-06 51.8 3.1 26 487-512 50-75 (263)
451 2ghi_A Transport protein; mult 89.0 0.2 6.8E-06 51.7 3.1 25 487-511 46-70 (260)
452 2pt7_A CAG-ALFA; ATPase, prote 88.9 0.29 9.8E-06 52.4 4.5 37 487-531 171-207 (330)
453 1mv5_A LMRA, multidrug resista 88.9 0.18 6.3E-06 51.3 2.8 26 487-512 28-53 (243)
454 2f9l_A RAB11B, member RAS onco 88.9 0.22 7.4E-06 48.7 3.3 22 489-510 7-28 (199)
455 1a7j_A Phosphoribulokinase; tr 88.9 0.22 7.4E-06 52.3 3.4 41 487-534 5-45 (290)
456 1ji0_A ABC transporter; ATP bi 88.9 0.2 6.8E-06 51.0 3.1 26 487-512 32-57 (240)
457 2ck3_A ATP synthase subunit al 88.9 0.82 2.8E-05 51.2 8.2 27 487-513 162-189 (510)
458 1oix_A RAS-related protein RAB 88.9 0.21 7.1E-06 48.6 3.1 23 489-511 31-53 (191)
459 2dyk_A GTP-binding protein; GT 88.8 0.23 7.8E-06 46.2 3.2 22 489-510 3-24 (161)
460 2qi9_C Vitamin B12 import ATP- 88.8 0.2 7E-06 51.2 3.0 26 487-512 26-51 (249)
461 2ixe_A Antigen peptide transpo 88.8 0.21 7.1E-06 51.9 3.1 26 487-512 45-70 (271)
462 3gfo_A Cobalt import ATP-bindi 88.7 0.21 7.1E-06 52.0 3.1 26 487-512 34-59 (275)
463 1xti_A Probable ATP-dependent 88.7 0.89 3E-05 49.2 8.4 22 487-508 45-66 (391)
464 1vpl_A ABC transporter, ATP-bi 88.6 0.22 7.4E-06 51.3 3.1 26 487-512 41-66 (256)
465 3ld9_A DTMP kinase, thymidylat 88.6 0.31 1.1E-05 48.9 4.2 27 487-513 21-47 (223)
466 3v9p_A DTMP kinase, thymidylat 88.6 0.23 7.8E-06 50.0 3.2 28 487-514 25-52 (227)
467 3fvq_A Fe(3+) IONS import ATP- 88.5 0.24 8.2E-06 53.5 3.5 26 487-512 30-55 (359)
468 1z2a_A RAS-related protein RAB 88.4 0.25 8.6E-06 46.2 3.3 23 488-510 6-28 (168)
469 1yks_A Genome polyprotein [con 88.4 0.16 5.4E-06 56.8 2.1 26 487-512 8-34 (440)
470 2yz2_A Putative ABC transporte 88.4 0.23 7.9E-06 51.4 3.1 26 487-512 33-58 (266)
471 3fdi_A Uncharacterized protein 88.3 0.25 8.7E-06 48.7 3.3 25 488-512 7-31 (201)
472 4g1u_C Hemin import ATP-bindin 88.3 0.22 7.6E-06 51.5 3.0 26 487-512 37-62 (266)
473 1z47_A CYSA, putative ABC-tran 88.2 0.26 9E-06 53.1 3.6 26 487-512 41-66 (355)
474 2ihy_A ABC transporter, ATP-bi 88.2 0.23 7.9E-06 51.7 3.0 26 487-512 47-72 (279)
475 2nq2_C Hypothetical ABC transp 88.2 0.23 7.9E-06 50.9 3.0 26 487-512 31-56 (253)
476 2ocp_A DGK, deoxyguanosine kin 88.1 0.23 8E-06 50.3 3.0 26 487-512 2-27 (241)
477 4f4c_A Multidrug resistance pr 88.1 1.7 5.8E-05 55.4 11.5 27 486-512 443-469 (1321)
478 4tmk_A Protein (thymidylate ki 88.0 0.36 1.2E-05 48.1 4.2 28 487-514 3-30 (213)
479 2wji_A Ferrous iron transport 88.0 0.26 9E-06 46.4 3.1 22 488-509 4-25 (165)
480 2onk_A Molybdate/tungstate ABC 88.0 0.27 9.4E-06 50.0 3.4 25 488-512 25-49 (240)
481 2ce2_X GTPase HRAS; signaling 88.0 0.27 9.1E-06 45.7 3.1 22 489-510 5-26 (166)
482 1nrj_B SR-beta, signal recogni 88.0 0.28 9.6E-06 48.5 3.4 25 487-511 12-36 (218)
483 2it1_A 362AA long hypothetical 88.0 0.28 9.7E-06 53.0 3.6 26 487-512 29-54 (362)
484 1oyw_A RECQ helicase, ATP-depe 87.9 2.1 7E-05 48.8 11.1 19 487-505 40-58 (523)
485 2yyz_A Sugar ABC transporter, 87.9 0.29 9.8E-06 52.9 3.7 26 487-512 29-54 (359)
486 3d31_A Sulfate/molybdate ABC t 87.9 0.25 8.7E-06 53.1 3.2 26 487-512 26-51 (348)
487 1ek0_A Protein (GTP-binding pr 87.9 0.28 9.7E-06 45.9 3.3 23 488-510 4-26 (170)
488 2zpa_A Uncharacterized protein 87.9 1.1 3.7E-05 52.2 8.6 98 488-619 193-290 (671)
489 2nzj_A GTP-binding protein REM 87.9 0.27 9.1E-06 46.4 3.1 23 488-510 5-27 (175)
490 1vyx_A ORF K3, K3RING; zinc-bi 87.8 0.034 1.2E-06 43.3 -2.7 49 187-237 5-56 (60)
491 2axn_A 6-phosphofructo-2-kinas 87.8 0.31 1.1E-05 55.6 4.1 27 487-513 35-61 (520)
492 2zej_A Dardarin, leucine-rich 87.7 0.23 7.9E-06 47.8 2.6 22 489-510 4-25 (184)
493 1wms_A RAB-9, RAB9, RAS-relate 87.7 0.29 9.9E-06 46.3 3.2 23 488-510 8-30 (177)
494 2gks_A Bifunctional SAT/APS ki 87.7 0.47 1.6E-05 54.4 5.5 27 487-513 372-398 (546)
495 1u8z_A RAS-related protein RAL 87.7 0.3 1E-05 45.5 3.3 23 488-510 5-27 (168)
496 3p32_A Probable GTPase RV1496/ 87.7 0.69 2.3E-05 49.9 6.6 27 487-513 79-105 (355)
497 1v43_A Sugar-binding transport 87.7 0.3 1E-05 53.0 3.6 26 487-512 37-62 (372)
498 3rlf_A Maltose/maltodextrin im 87.7 0.3 1E-05 53.1 3.6 26 487-512 29-54 (381)
499 1z0j_A RAB-22, RAS-related pro 87.6 0.3 1E-05 45.7 3.2 23 488-510 7-29 (170)
500 1fx0_B ATP synthase beta chain 87.6 0.55 1.9E-05 52.5 5.7 93 487-591 165-280 (498)
No 1
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-38 Score=337.15 Aligned_cols=272 Identities=20% Similarity=0.293 Sum_probs=228.0
Q ss_pred HHHhccccCCCCC-CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEE
Q 003175 449 AKATLLLATLPKF-LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVE 527 (842)
Q Consensus 449 ~~~~L~~~~~p~~-L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~ 527 (842)
.++.|+++|.|.. |+|||+|+++|..+|..++.++. +.++||+||||||||++++.+++++......+.++.+.+++
T Consensus 8 ~~~~l~~~~~~~~~L~~Re~E~~~i~~~L~~~i~~~~--~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~ 85 (318)
T 3te6_A 8 LEESIRESLQKRELLKSQVEDFTRIFLPIYDSLMSSQ--NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIH 85 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEE
T ss_pred hhhhhhhccCCccccCCHHHHHHHHHHHHHHHhcCCC--CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEE
Confidence 3556777776666 99999999999999999999876 89999999999999999999999998776666667799999
Q ss_pred EecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCC
Q 003175 528 VNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKP 607 (842)
Q Consensus 528 in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~ 607 (842)
|||+.+.++..+|..|++++.|+..+.......|..+|.... ...+.++||||||+|.|. .|++||++++|....
T Consensus 86 INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~---~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~ 160 (318)
T 3te6_A 86 IDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVP---KAKKRKTLILIQNPENLL--SEKILQYFEKWISSK 160 (318)
T ss_dssp EETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC---GGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCS
T ss_pred EeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh---hccCCceEEEEecHHHhh--cchHHHHHHhccccc
Confidence 999999999999999999999876554445667777776531 123468999999999999 799999999998777
Q ss_pred CCcEEEEEEeCCCCCccc-cchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-------------------------
Q 003175 608 NSKLIVIGIANTMDLPEK-LLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE------------------------- 661 (842)
Q Consensus 608 ~~~vivI~~tn~~dl~~~-l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~------------------------- 661 (842)
.++++||+++|++++++. +++++.|||..++|.|+||+.+|+.+||+.|+....
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 240 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQ 240 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC------
T ss_pred CCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 889999999999999875 578999999878899999999999999999997531
Q ss_pred -----------cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHh
Q 003175 662 -----------AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMF 730 (842)
Q Consensus 662 -----------~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~ 730 (842)
.++++++++||++++..+||+|+||++|++|+++|+.+....... ..+...||.+++.+++++++
T Consensus 241 ~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~----~~~~~~i~~~~~~~~~~~~~ 316 (318)
T 3te6_A 241 KIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKDFVRKGGL----QKGKLVVSQEMVPRYFSEAI 316 (318)
T ss_dssp --CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTTE----ETTEECCSEECCTHHHHHHH
T ss_pred cccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHhccCC----CCCcEEeeHHHHHHHHHHHh
Confidence 358999999999999999999999999999999999875433211 23557899999998888765
Q ss_pred h
Q 003175 731 Q 731 (842)
Q Consensus 731 ~ 731 (842)
+
T Consensus 317 ~ 317 (318)
T 3te6_A 317 N 317 (318)
T ss_dssp C
T ss_pred c
Confidence 4
No 2
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=100.00 E-value=2.6e-35 Score=329.82 Aligned_cols=366 Identities=24% Similarity=0.306 Sum_probs=302.4
Q ss_pred HHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEE
Q 003175 448 RAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVE 527 (842)
Q Consensus 448 ~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~ 527 (842)
..++.|++.+.|+.++||+++++.|..++...+.++. +.+++|+||||||||++++.+++.+........ ..+.+++
T Consensus 7 ~~~~~l~~~~~p~~~~gr~~~~~~l~~~l~~~~~~~~--~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~-~~~~~~~ 83 (387)
T 2v1u_A 7 RKRWVLLPDYVPDVLPHREAELRRLAEVLAPALRGEK--PSNALLYGLTGTGKTAVARLVLRRLEARASSLG-VLVKPIY 83 (387)
T ss_dssp SCHHHHSTTCCCSCCTTCHHHHHHHHHTTGGGTSSCC--CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHT-CCEEEEE
T ss_pred hCHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHcCCC--CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccC-CCeEEEE
Confidence 4567799999999999999999999999988766554 789999999999999999999999865432111 1277999
Q ss_pred EecccCCChHHHHHHHHHHHhCC----CCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC--ChHHHHHhh
Q 003175 528 VNGLKLASPENIYRVIYEALSGH----RVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR--NQSVLYNIL 601 (842)
Q Consensus 528 in~~~~~s~~~~~~~i~~~l~g~----~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~--~~~~L~~ll 601 (842)
+||....+...++..+...+... ..+.......+...+.. .+.+.||||||+|.+... .++.|+.++
T Consensus 84 i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~vlilDEi~~l~~~~~~~~~l~~l~ 156 (387)
T 2v1u_A 84 VNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSR-------LRGIYIIVLDEIDFLPKRPGGQDLLYRIT 156 (387)
T ss_dssp EETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTT-------SCSEEEEEEETTTHHHHSTTHHHHHHHHH
T ss_pred EECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc-------cCCeEEEEEccHhhhcccCCCChHHHhHh
Confidence 99999999988888888887321 11234444455444432 246899999999999887 689999999
Q ss_pred cCCCCC--CCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcC---cccCcHHHHHHHHHHHH
Q 003175 602 DWPTKP--NSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKG---IEAFEKQAIEFASRKVA 676 (842)
Q Consensus 602 ~~~~~~--~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~---~~~~~~~~l~~ia~~~~ 676 (842)
++.... ..+++||+++|..++.+.+.+++.+||....|.|+||+.+++.+|+..++.. ...+++++++++++.+.
T Consensus 157 ~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 157 RINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp HGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred hchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 876432 6688999999998887889999999998668999999999999999999863 23688889999988876
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHHH
Q 003175 677 AISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYEL 756 (842)
Q Consensus 677 ~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~~ 756 (842)
...||+|.++++|+.|+..|..+ +...|+.+||..|+..+..+...+.+.+++.+++++|++++...
T Consensus 237 ~~~G~~r~~~~~l~~a~~~a~~~-------------~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~ 303 (387)
T 2v1u_A 237 REHGDARRALDLLRVAGEIAERR-------------REERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLE 303 (387)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHT-------------TCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHS
T ss_pred HhccCHHHHHHHHHHHHHHHHHc-------------CCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66699999999999999888754 34679999999999998777778889999999999999998643
Q ss_pred HHcCCcceeHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhcccceEEe---cCCCCCCceEEEEecCHHHHHHHHhcCC
Q 003175 757 YKTGMGETNFEKLAMTVSSLCTSNGEIFPSWDALLRVGCKLGECRIILC---EPGSRHRLQKLQLNFPSDDVAFALKDSK 833 (842)
Q Consensus 757 ~~~g~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~~li~~---~~g~~~r~~~i~l~~~~~dv~~al~~~~ 833 (842)
.|...++++++|+.|..+|+..+..+.+...+..++..|...|+|.. ..|+.|++++++|.+++++|..+|++|+
T Consensus 304 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~~~~~~i~~~l~~~~ 381 (387)
T 2v1u_A 304 --DGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSRVVSRGRYGKTREVSLDADRLAVENALSEDP 381 (387)
T ss_dssp --SSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEEEECGGGCEEEEEEECSCHHHHHHHHHHST
T ss_pred --cCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEEeecCCCCCceeEEEecCCHHHHHHHHhccH
Confidence 26667899999999999999999888888999999999999999987 3467899999999999999999999999
Q ss_pred CCchh
Q 003175 834 DLPWL 838 (842)
Q Consensus 834 ~l~~l 838 (842)
.++-+
T Consensus 382 ~~~~~ 386 (387)
T 2v1u_A 382 FVARL 386 (387)
T ss_dssp TGGGG
T ss_pred hhhhc
Confidence 88643
No 3
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.1e-33 Score=310.87 Aligned_cols=364 Identities=22% Similarity=0.310 Sum_probs=286.5
Q ss_pred HHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEE
Q 003175 448 RAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVE 527 (842)
Q Consensus 448 ~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~ 527 (842)
..++.|++.+.|+.++||+++++.|..++...+.++. +.+++|+||+|||||++++.+++.+...... ...+++
T Consensus 8 ~~~~~l~~~~~p~~~~gr~~e~~~l~~~l~~~~~~~~--~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~----~~~~~~ 81 (386)
T 2qby_A 8 INREYLLPDYIPDELPHREDQIRKIASILAPLYREEK--PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG----KFKHVY 81 (386)
T ss_dssp SCGGGGSSSCCCSCCTTCHHHHHHHHHSSGGGGGTCC--CCCEEEEECTTSSHHHHHHHHHHHHHHHTCS----SCEEEE
T ss_pred cchhhCCCccCCCCCCChHHHHHHHHHHHHHHHcCCC--CCeEEEECCCCCCHHHHHHHHHHHHHHHhcC----CceEEE
Confidence 3456788999999999999999999999988776654 7899999999999999999999998754210 267999
Q ss_pred EecccCCChHHHHHHHHHHHhCC----CCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-hHHHHHhhc
Q 003175 528 VNGLKLASPENIYRVIYEALSGH----RVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-QSVLYNILD 602 (842)
Q Consensus 528 in~~~~~s~~~~~~~i~~~l~g~----~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-~~~L~~ll~ 602 (842)
++|....+...++..+...+... ..+.......+.+.+.. .+.+.||||||+|.+.... ++.++.+++
T Consensus 82 i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~vlilDE~~~l~~~~~~~~l~~l~~ 154 (386)
T 2qby_A 82 INTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD-------YGSQVVIVLDEIDAFVKKYNDDILYKLSR 154 (386)
T ss_dssp EEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT-------CCSCEEEEEETHHHHHHSSCSTHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc-------cCCeEEEEEcChhhhhccCcCHHHHHHhh
Confidence 99998887777776665554211 11234445555555432 1357999999999998664 677777765
Q ss_pred CCCC-CCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc---ccCcHHHHHHHHHHHHHH
Q 003175 603 WPTK-PNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI---EAFEKQAIEFASRKVAAI 678 (842)
Q Consensus 603 ~~~~-~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~---~~~~~~~l~~ia~~~~~~ 678 (842)
+... ...++.||+++|..++...+.+++.+||..+.|.|+||+.+++.+||..++... ..+++++++++++.+...
T Consensus 155 ~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (386)
T 2qby_A 155 INSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAARE 234 (386)
T ss_dssp HHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHT
T ss_pred chhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 4421 456899999999887777888999999976789999999999999999987632 378899999998887656
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHHHHH
Q 003175 679 SGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYELYK 758 (842)
Q Consensus 679 ~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~~~~ 758 (842)
.|++|.++++|+.|+..|..+ +...|+.+||..|+.++..+...+.+..++.+++.+|.||+.+. +
T Consensus 235 ~G~~r~~~~ll~~a~~~a~~~-------------~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~il~ai~~~~-~ 300 (386)
T 2qby_A 235 HGDARRALDLLRVSGEIAERM-------------KDTKVKEEYVYMAKEEIERDRVRDIILTLPFHSKLVLMAVVSIS-S 300 (386)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT-------------TCSSCCHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHHHHhc-------------CCCccCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHH-h
Confidence 699999999999999888754 34689999999999998776777888899999999999998643 3
Q ss_pred cCCcceeHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhcccceEEe---cCCCCCCceEEEEecCHHHHHHHHhc-CCC
Q 003175 759 TGMGETNFEKLAMTVSSLCTSNGEIFPSWDALLRVGCKLGECRIILC---EPGSRHRLQKLQLNFPSDDVAFALKD-SKD 834 (842)
Q Consensus 759 ~g~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~~li~~---~~g~~~r~~~i~l~~~~~dv~~al~~-~~~ 834 (842)
.|..+++++++++.|..+|+..|..+.+...+..++..|...|+|.. ..|++|+++.++|.+++++|..+|++ |..
T Consensus 301 ~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~y~~~~l~~~~~~v~~~l~~~~~~ 380 (386)
T 2qby_A 301 EENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTAKVVNRGRYGKTKEIGLAVDKNIIVRSLIESDSR 380 (386)
T ss_dssp ----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEEECCCTTSCCCEEEEESSCSHHHHHHHHHHC--
T ss_pred cCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEEeecCCCCCCeEEEEeCCCHHHHHHHHhcCChh
Confidence 35566889999999999999988777788889999999999999976 45778999999999999999999999 988
Q ss_pred Cchh
Q 003175 835 LPWL 838 (842)
Q Consensus 835 l~~l 838 (842)
+..+
T Consensus 381 ~~~~ 384 (386)
T 2qby_A 381 FADL 384 (386)
T ss_dssp ----
T ss_pred hhhh
Confidence 8654
No 4
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.6e-33 Score=310.33 Aligned_cols=346 Identities=21% Similarity=0.305 Sum_probs=285.4
Q ss_pred HHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhh-cCCCCCceEE
Q 003175 448 RAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVE-SGSIRPYCFV 526 (842)
Q Consensus 448 ~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~-~~~~~~~~~v 526 (842)
..+..|.+.+.|+.|+||+++++.|..++...+.++. +++++|+||||||||++++.+++.+..... ....+...++
T Consensus 8 ~~~~~l~~~~~p~~l~gr~~~~~~l~~~l~~~~~~~~--~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 85 (384)
T 2qby_B 8 NPKVFIDPLSVFKEIPFREDILRDAAIAIRYFVKNEV--KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQA 85 (384)
T ss_dssp CTTTTTCHHHHCSSCTTCHHHHHHHHHHHHHHHTTCC--CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEE
T ss_pred ccHhhcCCccCCCCCCChHHHHHHHHHHHHHHHcCCC--CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEE
Confidence 4466788888999999999999999999999887764 679999999999999999999999876432 1111137799
Q ss_pred EEecccCC-ChHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-hHH-HH
Q 003175 527 EVNGLKLA-SPENIYRVIYEALSGHRV-----SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-QSV-LY 598 (842)
Q Consensus 527 ~in~~~~~-s~~~~~~~i~~~l~g~~~-----~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-~~~-L~ 598 (842)
++||.... ++..++..+...+.|... +.......+...+.. .. .||||||+|.+.... ++. |+
T Consensus 86 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~--------~~-~vlilDEi~~l~~~~~~~~~l~ 156 (384)
T 2qby_B 86 YVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN--------IR-AIIYLDEVDTLVKRRGGDIVLY 156 (384)
T ss_dssp EEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS--------SC-EEEEEETTHHHHHSTTSHHHHH
T ss_pred EEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc--------CC-CEEEEECHHHhccCCCCceeHH
Confidence 99999988 888888888888865432 223444444444321 12 399999999998764 788 99
Q ss_pred HhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcC-c--ccCcHHHHHHHHHHH
Q 003175 599 NILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKG-I--EAFEKQAIEFASRKV 675 (842)
Q Consensus 599 ~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~-~--~~~~~~~l~~ia~~~ 675 (842)
.++++. .++.||+++|..++.+.+++++.+||.. .|.|+||+.+++.+||..++.. . ..+++++++.+++.+
T Consensus 157 ~l~~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~-~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~ 231 (384)
T 2qby_B 157 QLLRSD----ANISVIMISNDINVRDYMEPRVLSSLGP-SVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAIS 231 (384)
T ss_dssp HHHTSS----SCEEEEEECSSTTTTTTSCHHHHHTCCC-EEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHH
T ss_pred HHhcCC----cceEEEEEECCCchHhhhCHHHHhcCCC-eEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHH
Confidence 999876 6899999999987778899999999974 8999999999999999999862 2 368889999999988
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHH
Q 003175 676 AAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYE 755 (842)
Q Consensus 676 ~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~ 755 (842)
....||+|.++++|+.|+.+|. +...|+.+||..++.++..+...+.++.|+.+++.+|.+++.
T Consensus 232 ~~~~G~~r~a~~~l~~a~~~a~---------------~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~l~al~~- 295 (384)
T 2qby_B 232 AKEHGDARKAVNLLFRAAQLAS---------------GGGIIRKEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIE- 295 (384)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTT---------------SSSCCCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHT-
T ss_pred HhccCCHHHHHHHHHHHHHHhc---------------CCCccCHHHHHHHHHHHhcchHHHHHHcCCHHHHHHHHHHHH-
Confidence 7667999999999999998875 246799999999999988777788899999999999999874
Q ss_pred HHHcCCcceeHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhcccceEEec---CCCCCCceEEEEecCHHHHHHHHhcC
Q 003175 756 LYKTGMGETNFEKLAMTVSSLCTSNGEIFPSWDALLRVGCKLGECRIILCE---PGSRHRLQKLQLNFPSDDVAFALKDS 832 (842)
Q Consensus 756 ~~~~g~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~~li~~~---~g~~~r~~~i~l~~~~~dv~~al~~~ 832 (842)
+.. . +++++.|..+|+..|..+.+...+.+++..|...|+|... .|.+|++++++|.+++++|.++|+++
T Consensus 296 ----~~~--~-~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~~~~~~v~~~l~~~ 368 (384)
T 2qby_B 296 ----SED--V-MSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIRIINRGRAGGVKKYALVEDKEKVLRALNET 368 (384)
T ss_dssp ----CCB--H-HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEEECCTTTTCCEEEEEESSSHHHHHHHHHH
T ss_pred ----hcc--c-ChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEEeccCCCCCceEEEEecCCHHHHHHHHHHH
Confidence 111 1 6888999999999887778889999999999999999863 46779999999999999999999853
No 5
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=100.00 E-value=1.8e-32 Score=307.25 Aligned_cols=352 Identities=21% Similarity=0.264 Sum_probs=283.7
Q ss_pred HHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCC--eEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEE
Q 003175 449 AKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGR--CLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFV 526 (842)
Q Consensus 449 ~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~--~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v 526 (842)
.++.|.+.+.|+.++||+++++.|..++...+.+.. +. +++|+||+|||||++++.+++.+.... .+.++
T Consensus 6 ~~~~l~~~~~p~~l~gr~~~~~~l~~~l~~~~~~~~--~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~ 77 (389)
T 1fnn_A 6 DDSVFSPSYVPKRLPHREQQLQQLDILLGNWLRNPG--HHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFV 77 (389)
T ss_dssp CGGGGSTTCCCSCCTTCHHHHHHHHHHHHHHHHSTT--SSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEE
T ss_pred CHhhcCCccCCCCCCChHHHHHHHHHHHHHHHcCCC--CCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEE
Confidence 356688999999999999999999999999887754 45 899999999999999999999875321 26799
Q ss_pred EEecccCCChHHHHHHHHHHHhCC----CCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhc
Q 003175 527 EVNGLKLASPENIYRVIYEALSGH----RVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILD 602 (842)
Q Consensus 527 ~in~~~~~s~~~~~~~i~~~l~g~----~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~ 602 (842)
++||....+...++..+...+... ..+.......+...+.. .+.+.||||||+|.+ ....++.|++
T Consensus 78 ~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~vlilDE~~~l---~~~~~~~L~~ 147 (389)
T 1fnn_A 78 YINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE-------RDLYMFLVLDDAFNL---APDILSTFIR 147 (389)
T ss_dssp EEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH-------TTCCEEEEEETGGGS---CHHHHHHHHH
T ss_pred EEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhh-------cCCeEEEEEECcccc---chHHHHHHHH
Confidence 999999888888888888776321 12344555555555532 235799999999999 3455555555
Q ss_pred CCCC-CC---CcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcC---cccCcHHHHHHHHHHH
Q 003175 603 WPTK-PN---SKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKG---IEAFEKQAIEFASRKV 675 (842)
Q Consensus 603 ~~~~-~~---~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~---~~~~~~~~l~~ia~~~ 675 (842)
+... .. .++.||+++|..++.+.+.+++.+||....|.|+||+.+++.+|+..++.. ...+++++++.+++.+
T Consensus 148 ~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 148 LGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADIT 227 (389)
T ss_dssp HTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHH
T ss_pred HHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 4432 12 589999999987766788899999998668999999999999999999864 2478999999988876
Q ss_pred HHH------hcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHH
Q 003175 676 AAI------SGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFL 749 (842)
Q Consensus 676 ~~~------~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL 749 (842)
.+. .||+|.++++|+.|+..|..+ +...|+.++|..++.........+.+.+|+.+++.+|
T Consensus 228 ~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~-------------~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L 294 (389)
T 1fnn_A 228 GAQTPLDTNRGDARLAIDILYRSAYAAQQN-------------GRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFL 294 (389)
T ss_dssp SBSSTTCTTSCCHHHHHHHHHHHHHHHHHT-------------TCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHH
T ss_pred hhcccCCCCCCcHHHHHHHHHHHHHHHHHh-------------CCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHH
Confidence 555 799999999999999988754 2467999999999999888888889999999999999
Q ss_pred HHHHHHHH-HcCCcceeHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhcccceEEec-----CCCCCCceEEEEecCHH
Q 003175 750 TAMVYELY-KTGMGETNFEKLAMTVSSLCTSNGEIFPSWDALLRVGCKLGECRIILCE-----PGSRHRLQKLQLNFPSD 823 (842)
Q Consensus 750 ~a~~~~~~-~~g~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~~li~~~-----~g~~~r~~~i~l~~~~~ 823 (842)
.+|+.... ..|. +++++++++.|..+|+..+..+.+...+..++..|...|+|... .|.+|+++.++|.++++
T Consensus 295 ~~l~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~ 373 (389)
T 1fnn_A 295 LAIVRSLKISHTP-YITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPL 373 (389)
T ss_dssp HHHHHHHHHHCSS-CEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCH
T ss_pred HHHHHHHhhccCC-CccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHH
Confidence 99987653 2333 78999999999999999888778889999999999999999873 46778999999999999
Q ss_pred HHHHHHhcC
Q 003175 824 DVAFALKDS 832 (842)
Q Consensus 824 dv~~al~~~ 832 (842)
||.++|.++
T Consensus 374 ~v~~~~~~~ 382 (389)
T 1fnn_A 374 DTLEAVITK 382 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.97 E-value=1.4e-28 Score=277.81 Aligned_cols=359 Identities=17% Similarity=0.187 Sum_probs=271.9
Q ss_pred HHHHhccccCCCCCCCCcHHHHHHHHHHH-HHhhcC--CcccCCeEEE--EcCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 003175 448 RAKATLLLATLPKFLPCRNKEMEDITAFI-KGATCD--DQCLGRCLYI--HGVPGTGKTMSVLAVMRSLRSEVESGSIRP 522 (842)
Q Consensus 448 ~~~~~L~~~~~p~~L~gRe~e~~~l~~~l-~~~i~~--~~~~~~~ili--~GppGtGKT~l~~~v~~~l~~~~~~~~~~~ 522 (842)
..++.|++.+.|..|+||++|++.|..++ ...+.+ .. +.+++| +|++|+|||+|++.+++.+....... ...
T Consensus 10 ~~~~~~~~~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~--~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~-~~~ 86 (412)
T 1w5s_A 10 KDRRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLS--DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKE-GLT 86 (412)
T ss_dssp SCGGGGSTTCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBC--CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred ccHhhcCCccCCCCCCChHHHHHHHHHHHhHHHhcCCCCC--CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhcc-CCc
Confidence 34567889999999999999999999999 887765 32 678999 99999999999999999887542111 112
Q ss_pred ceEEEEecccCCChHHHHHHHHHHHhCC----CCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC---ChH
Q 003175 523 YCFVEVNGLKLASPENIYRVIYEALSGH----RVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR---NQS 595 (842)
Q Consensus 523 ~~~v~in~~~~~s~~~~~~~i~~~l~g~----~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~---~~~ 595 (842)
+.+++++|....+...++..|...+... ..+.......+...+... +++.||||||+|.+... .++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~llvlDe~~~l~~~~~~~~~ 159 (412)
T 1w5s_A 87 VKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVE-------NHYLLVILDEFQSMLSSPRIAAE 159 (412)
T ss_dssp EEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHH-------TCEEEEEEESTHHHHSCTTSCHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEeCHHHHhhccCcchH
Confidence 6789999988888888888888877322 122344455555555321 36799999999999864 567
Q ss_pred HHHHhhcCCCC-C--C--CcEEEEEEeCCCCCccccc---hhhhccCCceeEEecCCCHHHHHHHHHHHhcCc---ccCc
Q 003175 596 VLYNILDWPTK-P--N--SKLIVIGIANTMDLPEKLL---PRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI---EAFE 664 (842)
Q Consensus 596 ~L~~ll~~~~~-~--~--~~vivI~~tn~~dl~~~l~---~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~---~~~~ 664 (842)
.|+.++++... . . .++.||++++..++.+.+. +++.+++.. .+.|+||+.+++.+|+..++... ..++
T Consensus 160 ~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~-~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~ 238 (412)
T 1w5s_A 160 DLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGF-KLHLPAYKSRELYTILEQRAELGLRDTVWE 238 (412)
T ss_dssp HHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSE-EEECCCCCHHHHHHHHHHHHHHHBCTTSCC
T ss_pred HHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCC-eeeeCCCCHHHHHHHHHHHHHhcCCCCCCC
Confidence 77776654321 1 3 7899999998766666666 788889874 49999999999999999887532 2578
Q ss_pred HHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHh-hChHHHHHhh
Q 003175 665 KQAIEFASRKVAAIS---GDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMF-QAPHIQVMKS 740 (842)
Q Consensus 665 ~~~l~~ia~~~~~~~---Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~-~~~~~~~l~~ 740 (842)
+++++.+.+.+.... |++|.++.+|+.|+..|..+ +...|+.+++..++.... .......+..
T Consensus 239 ~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~-------------~~~~i~~~~v~~~~~~~~~~~~~~~~l~~ 305 (412)
T 1w5s_A 239 PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAM-------------GRDSLSEDLVRKAVSENEAASIQTHELEA 305 (412)
T ss_dssp HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHT-------------TCSSCCHHHHHHHHHHC------CCSSSS
T ss_pred hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHc-------------CCCCCCHHHHHHHHHHHhccchHHHHHHc
Confidence 888888887765444 99999999999998887644 245789999998887655 3334445678
Q ss_pred CchHHHHHHHHHHHHHHHcCCcceeHHHHHHHHHHHH-hhcCCCCCCHHHHHHHHHHhcccceEEec---CCCCCCceEE
Q 003175 741 CSKLSKIFLTAMVYELYKTGMGETNFEKLAMTVSSLC-TSNGEIFPSWDALLRVGCKLGECRIILCE---PGSRHRLQKL 816 (842)
Q Consensus 741 ls~~~kliL~a~~~~~~~~g~~~~~~~~v~~~y~~~~-~~~~~~~~~~~~~~~~~~~L~~~~li~~~---~g~~~r~~~i 816 (842)
|+.+++.+|.+++... ..+..+++++++++.|..+| ...+..+.....+..++..|...|+|... .|++|+++.+
T Consensus 306 l~~~~~~~l~aia~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~ 384 (412)
T 1w5s_A 306 LSIHELIILRLIAEAT-LGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLF 384 (412)
T ss_dssp SCHHHHHHHHHHHHHH-HTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEE
T ss_pred CCHHHHHHHHHHHHHH-hcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEE
Confidence 9999999999988643 33556788999999999999 88887667778888889999999999764 3678999999
Q ss_pred EEe--cCHHHHHHHHhc
Q 003175 817 QLN--FPSDDVAFALKD 831 (842)
Q Consensus 817 ~l~--~~~~dv~~al~~ 831 (842)
+|. +++++|.++|++
T Consensus 385 ~l~~~~~~~~~~~~~~~ 401 (412)
T 1w5s_A 385 RLAPHLPADRLIEVVDN 401 (412)
T ss_dssp EECTTSCHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 999 999999999876
No 7
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.6e-23 Score=227.85 Aligned_cols=231 Identities=21% Similarity=0.285 Sum_probs=172.6
Q ss_pred cccccCcccHHHHHHHhccccCC-CCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 436 EHVRCHKQTELERAKATLLLATL-PKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 436 ~~~~~~~~~~~~~~~~~L~~~~~-p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+.++|.++.++..+++.|..... |-..| +.+.. .+..+++++|||||||||||++|+++|++++
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~p----------e~f~~---~gi~~prGvLL~GPPGTGKTllAkAiA~e~~-- 207 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHP----------ELFES---LGIAQPKGVILYGPPGTGKTLLARAVAHHTD-- 207 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCH----------HHHHH---HTCCCCCCEEEESCSSSSHHHHHHHHHHHHT--
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCH----------HHHHh---CCCCCCCceEEeCCCCCCHHHHHHHHHHhhC--
Confidence 35788888888888877764432 11111 11111 1223578999999999999999999999987
Q ss_pred hhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-
Q 003175 515 VESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN- 593 (842)
Q Consensus 515 ~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~- 593 (842)
.+|+.|++..+.+. ...+....+.+.|..+.. ..|+||||||+|.+..++
T Consensus 208 --------~~f~~v~~s~l~sk----------------~vGese~~vr~lF~~Ar~-----~aP~IIFiDEiDai~~~R~ 258 (405)
T 4b4t_J 208 --------CKFIRVSGAELVQK----------------YIGEGSRMVRELFVMARE-----HAPSIIFMDEIDSIGSTRV 258 (405)
T ss_dssp --------CEEEEEEGGGGSCS----------------STTHHHHHHHHHHHHHHH-----TCSEEEEEESSSCCTTSCS
T ss_pred --------CCceEEEhHHhhcc----------------ccchHHHHHHHHHHHHHH-----hCCceEeeecchhhccCCC
Confidence 67999999887653 122445667777776643 378999999999998653
Q ss_pred ----------hHH---HHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhc
Q 003175 594 ----------QSV---LYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLK 658 (842)
Q Consensus 594 ----------~~~---L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~ 658 (842)
+.. |++.++.. .....|+|||+||+ ++.|++++.+ ||+ +.|.|+.|+.+++.+||+.+++
T Consensus 259 ~~~~~~~~~~~~~l~~lL~~lDg~-~~~~~V~vIaATNr---pd~LDpAllRpGRfD-~~I~i~lPd~~~R~~Il~~~~~ 333 (405)
T 4b4t_J 259 EGSGGGDSEVQRTMLELLNQLDGF-ETSKNIKIIMATNR---LDILDPALLRPGRID-RKIEFPPPSVAARAEILRIHSR 333 (405)
T ss_dssp CSSSGGGGHHHHHHHHHHHHHHTT-TCCCCEEEEEEESC---SSSSCHHHHSTTSSC-CEEECCCCCHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHHHhhhcc-CCCCCeEEEeccCC---hhhCCHhHcCCCcCc-eEEEcCCcCHHHHHHHHHHHhc
Confidence 123 44445543 34678999999999 5778999987 998 7999999999999999999998
Q ss_pred CcccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 659 GIEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 659 ~~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
..+..++..++.+++.+.+++| |+. .+|+.|+..|.++ +...|+.+||..|+.++..
T Consensus 334 ~~~l~~dvdl~~lA~~t~G~SGADi~---~l~~eA~~~Air~-------------~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 334 KMNLTRGINLRKVAEKMNGCSGADVK---GVCTEAGMYALRE-------------RRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp TSBCCSSCCHHHHHHHCCSCCHHHHH---HHHHHHHHHHHHT-------------TCSBCCHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHCCCCCHHHHH---HHHHHHHHHHHHc-------------CCCCcCHHHHHHHHHHHhC
Confidence 7765555557888888877777 554 5899999998765 3567999999999987653
No 8
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2e-23 Score=229.04 Aligned_cols=232 Identities=21% Similarity=0.253 Sum_probs=169.3
Q ss_pred CcccccCcccHHHHHHHhccccCC-CCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 435 PEHVRCHKQTELERAKATLLLATL-PKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 435 p~~~~~~~~~~~~~~~~~L~~~~~-p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
.+.++|.++.++..+++.|..... |-..+ +.+. ..+..+++++|||||||||||++|+++|++++
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~p----------e~f~---~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~- 241 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHP----------ELYE---EMGIKPPKGVILYGAPGTGKTLLAKAVANQTS- 241 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCC----------HHHH---HHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT-
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCH----------HHHH---hCCCCCCCCCceECCCCchHHHHHHHHHHHhC-
Confidence 345778888777777766653221 10000 1111 11233578999999999999999999999987
Q ss_pred HhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC
Q 003175 514 EVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN 593 (842)
Q Consensus 514 ~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~ 593 (842)
..|+.+++..+.+. ...+....+...|..+.. ..|+||||||+|.+...+
T Consensus 242 ---------~~fi~v~~s~l~sk----------------~vGesek~ir~lF~~Ar~-----~aP~IIfiDEiDai~~~R 291 (437)
T 4b4t_I 242 ---------ATFLRIVGSELIQK----------------YLGDGPRLCRQIFKVAGE-----NAPSIVFIDEIDAIGTKR 291 (437)
T ss_dssp ---------CEEEEEESGGGCCS----------------SSSHHHHHHHHHHHHHHH-----TCSEEEEEEEESSSSCCC
T ss_pred ---------CCEEEEEHHHhhhc----------------cCchHHHHHHHHHHHHHh-----cCCcEEEEehhhhhcccC
Confidence 67999999887653 112344566677766543 378999999999998753
Q ss_pred -----------hHH---HHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHh
Q 003175 594 -----------QSV---LYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRL 657 (842)
Q Consensus 594 -----------~~~---L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l 657 (842)
+.. |++.++.. .....++||++||+ ++.|++++.+ ||+ +.|+|+.++.+++.+||+.++
T Consensus 292 ~~~~~~~~~~~~~~l~~LL~~lDg~-~~~~~ViVIaATNr---pd~LDpALlRpGRfD-~~I~v~lPd~~~R~~Il~~~l 366 (437)
T 4b4t_I 292 YDSNSGGEREIQRTMLELLNQLDGF-DDRGDVKVIMATNK---IETLDPALIRPGRID-RKILFENPDLSTKKKILGIHT 366 (437)
T ss_dssp SCSSCSSCCHHHHHHHHHHHHHHHC-CCSSSEEEEEEESC---STTCCTTSSCTTTEE-EEECCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHhhCc-CCCCCEEEEEeCCC---hhhcCHHHhcCCcee-EEEEcCCcCHHHHHHHHHHHh
Confidence 123 44444443 34678999999998 5778898887 888 689999999999999999999
Q ss_pred cCcccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 658 KGIEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 658 ~~~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
.....-++..++.+++.+.+++| |+. .+|+.|+..|.++ +...|+.+||..|+.++..
T Consensus 367 ~~~~l~~dvdl~~LA~~T~GfSGADI~---~l~~eA~~~Air~-------------~~~~It~eDf~~Al~rv~~ 425 (437)
T 4b4t_I 367 SKMNLSEDVNLETLVTTKDDLSGADIQ---AMCTEAGLLALRE-------------RRMQVTAEDFKQAKERVMK 425 (437)
T ss_dssp TTSCBCSCCCHHHHHHHCCSCCHHHHH---HHHHHHHHHHHHT-------------TCSCBCHHHHHHHHHHHHH
T ss_pred cCCCCCCcCCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHc-------------CCCccCHHHHHHHHHHHhC
Confidence 87664445457788888777777 554 5899999998765 3567999999999987654
No 9
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.6e-22 Score=224.07 Aligned_cols=230 Identities=21% Similarity=0.266 Sum_probs=168.4
Q ss_pred ccccCcccHHHHHHHhccccCC-CCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHh
Q 003175 437 HVRCHKQTELERAKATLLLATL-PKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEV 515 (842)
Q Consensus 437 ~~~~~~~~~~~~~~~~L~~~~~-p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~ 515 (842)
.|+|.++.++..+++.|..... |-..+ +.+.. -+..+++++|||||||||||++|+++|++++
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~p----------e~f~~---~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~--- 268 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSP----------ERFAT---LGIDPPKGILLYGPPGTGKTLCARAVANRTD--- 268 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCH----------HHHHH---HTCCCCSEEEECSCTTSSHHHHHHHHHHHHT---
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCH----------HHHHH---CCCCCCCceEeeCCCCCcHHHHHHHHHhccC---
Confidence 4777777777777766654321 10000 01111 1223589999999999999999999999987
Q ss_pred hcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC--
Q 003175 516 ESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-- 593 (842)
Q Consensus 516 ~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-- 593 (842)
..|+.+++..+.+. . .....+.+...|..+.. ..|+||||||+|.+...+
T Consensus 269 -------~~fi~vs~s~L~sk--------------~--vGesek~ir~lF~~Ar~-----~aP~IIfiDEiDai~~~R~~ 320 (467)
T 4b4t_H 269 -------ATFIRVIGSELVQK--------------Y--VGEGARMVRELFEMART-----KKACIIFFDEIDAVGGARFD 320 (467)
T ss_dssp -------CEEEEEEGGGGCCC--------------S--SSHHHHHHHHHHHHHHH-----TCSEEEEEECCTTTSBCCSS
T ss_pred -------CCeEEEEhHHhhcc--------------c--CCHHHHHHHHHHHHHHh-----cCCceEeecccccccccccC
Confidence 67999999887653 1 12344566677766543 378999999999998653
Q ss_pred ---------hHH---HHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcC
Q 003175 594 ---------QSV---LYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKG 659 (842)
Q Consensus 594 ---------~~~---L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~ 659 (842)
+.. |++.++.. .....|+|||+||+ ++.|++++.+ ||. +.|.|+.++.+++.+||+.+++.
T Consensus 321 ~~~~~~~~~~~~l~~lL~~lDg~-~~~~~ViVIaATNr---pd~LDpALlRpGRFD-~~I~i~lPd~~~R~~Ilk~~l~~ 395 (467)
T 4b4t_H 321 DGAGGDNEVQRTMLELITQLDGF-DPRGNIKVMFATNR---PNTLDPALLRPGRID-RKVEFSLPDLEGRANIFRIHSKS 395 (467)
T ss_dssp SSCGGGGHHHHHHHHHHHHHHSS-CCTTTEEEEEECSC---TTSBCHHHHSTTTCC-EEECCCCCCHHHHHHHHHHHHTT
T ss_pred cCCCccHHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCC---cccCChhhhcccccc-EEEEeCCcCHHHHHHHHHHHhcC
Confidence 122 44444543 34678999999998 5778999977 999 79999999999999999999987
Q ss_pred cccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 660 IEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 660 ~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
...-.+..++.+++.+.+++| |++ .+|+.|+..|.++ +...|+.+||..|+.++..
T Consensus 396 ~~l~~dvdl~~LA~~T~GfSGADI~---~l~~eAa~~Air~-------------~~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 396 MSVERGIRWELISRLCPNSTGAELR---SVCTEAGMFAIRA-------------RRKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp SCBCSSCCHHHHHHHCCSCCHHHHH---HHHHHHHHHHHHH-------------TCSSBCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHCCCCCHHHHH---HHHHHHHHHHHHc-------------CCCccCHHHHHHHHHHHhc
Confidence 664444457788888777777 554 5899999999876 3567999999999987653
No 10
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.3e-22 Score=225.91 Aligned_cols=231 Identities=21% Similarity=0.245 Sum_probs=166.9
Q ss_pred cccccCcccHHHHHHHhccccCC-CCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 436 EHVRCHKQTELERAKATLLLATL-PKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 436 ~~~~~~~~~~~~~~~~~L~~~~~-p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+.++|.++.++..+++.|....+ |-..+ +.+.. .+..+++++|||||||||||++|+++|++++
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~p----------e~f~~---~g~~~prGvLLyGPPGTGKTllAkAiA~e~~-- 240 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRA----------DKFKD---MGIRAPKGALMYGPPGTGKTLLARACAAQTN-- 240 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCS----------HHHHH---HCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCH----------HHHHh---CCCCCCCeeEEECcCCCCHHHHHHHHHHHhC--
Confidence 34677777777777766653321 10001 11111 1333578999999999999999999999987
Q ss_pred hhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-
Q 003175 515 VESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN- 593 (842)
Q Consensus 515 ~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~- 593 (842)
.+|+.+++..+.+. . .....+.+...|..+.. ..|+||||||+|.|..++
T Consensus 241 --------~~f~~v~~s~l~~~--------------~--vGese~~ir~lF~~A~~-----~aP~IifiDEiDal~~~R~ 291 (434)
T 4b4t_M 241 --------ATFLKLAAPQLVQM--------------Y--IGEGAKLVRDAFALAKE-----KAPTIIFIDELDAIGTKRF 291 (434)
T ss_dssp --------CEEEEEEGGGGCSS--------------C--SSHHHHHHHHHHHHHHH-----HCSEEEEEECTHHHHCCCS
T ss_pred --------CCEEEEehhhhhhc--------------c--cchHHHHHHHHHHHHHh-----cCCeEEeecchhhhhhccC
Confidence 67999999887653 1 12344556666665543 368999999999998653
Q ss_pred ----------h---HHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhc
Q 003175 594 ----------Q---SVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLK 658 (842)
Q Consensus 594 ----------~---~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~ 658 (842)
+ ..|++.++... ...+|+|||+||+ ++.|++++.+ ||. +.|.|+.|+.+++.+||+.++.
T Consensus 292 ~~~~~~~~~~~~~~~~lL~~ldg~~-~~~~ViVIaaTNr---p~~LD~AllRpGRfD-~~I~i~lPd~~~R~~Il~~~~~ 366 (434)
T 4b4t_M 292 DSEKSGDREVQRTMLELLNQLDGFS-SDDRVKVLAATNR---VDVLDPALLRSGRLD-RKIEFPLPSEDSRAQILQIHSR 366 (434)
T ss_dssp SGGGGTTHHHHHHHHHHHHHHTTSC-SSCSSEEEEECSS---CCCCCTTTCSTTSEE-EEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHhhccC-CCCCEEEEEeCCC---chhcCHhHhcCCcee-EEEEeCCcCHHHHHHHHHHHhc
Confidence 1 13555555443 4567999999998 4778898876 898 7899999999999999999988
Q ss_pred CcccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 659 GIEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 659 ~~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
....-.+..++.+++.+.+++| |+. .+|+.|+..|.++ +...|+.+||..|+.++..
T Consensus 367 ~~~~~~dvdl~~lA~~t~G~sGADi~---~l~~eA~~~a~r~-------------~~~~i~~~Df~~Al~~v~~ 424 (434)
T 4b4t_M 367 KMTTDDDINWQELARSTDEFNGAQLK---AVTVEAGMIALRN-------------GQSSVKHEDFVEGISEVQA 424 (434)
T ss_dssp HSCBCSCCCHHHHHHHCSSCCHHHHH---HHHHHHHHHHHHH-------------TCSSBCHHHHHHHHHSCSS
T ss_pred CCCCCCcCCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHc-------------CCCCcCHHHHHHHHHHHhC
Confidence 7654444447778888777776 454 5899999998876 3567999999999987654
No 11
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3e-22 Score=223.20 Aligned_cols=226 Identities=19% Similarity=0.218 Sum_probs=166.4
Q ss_pred cccccCcccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhc-------CCcccCCeEEEEcCCCChHHHHHHHHH
Q 003175 436 EHVRCHKQTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATC-------DDQCLGRCLYIHGVPGTGKTMSVLAVM 508 (842)
Q Consensus 436 ~~~~~~~~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~-------~~~~~~~~ili~GppGtGKT~l~~~v~ 508 (842)
+.++|.++.++..+++.|.. .+.-.+. .+..+++++|||||||||||++|+++|
T Consensus 176 p~v~~~digGl~~~k~~l~e-------------------~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELRE-------------------VIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHH-------------------HHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCChhHhCChHHHHHHHHH-------------------HHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 45677777776666665543 3222111 133357999999999999999999999
Q ss_pred HHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcc
Q 003175 509 RSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDL 588 (842)
Q Consensus 509 ~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~ 588 (842)
++++ .+|+.+++..+.+. ........+...|..+.. ..|+||||||+|.
T Consensus 237 ~e~~----------~~~~~v~~s~l~sk----------------~~Gese~~ir~~F~~A~~-----~~P~IifiDEiDa 285 (437)
T 4b4t_L 237 ATIG----------ANFIFSPASGIVDK----------------YIGESARIIREMFAYAKE-----HEPCIIFMDEVDA 285 (437)
T ss_dssp HHHT----------CEEEEEEGGGTCCS----------------SSSHHHHHHHHHHHHHHH-----SCSEEEEEECCCS
T ss_pred HHhC----------CCEEEEehhhhccc----------------cchHHHHHHHHHHHHHHh-----cCCceeeeecccc
Confidence 9987 67999999887653 112344566667766543 3789999999999
Q ss_pred cccCC-----------h---HHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHH
Q 003175 589 LVTRN-----------Q---SVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEI 652 (842)
Q Consensus 589 L~~~~-----------~---~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~I 652 (842)
+..++ . ..|++.++.. .....++|||+||+ ++.|++++.+ ||. +.|+|+.|+.+++.+|
T Consensus 286 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~-~~~~~vivI~ATNr---p~~LDpAllRpGRfD-~~I~i~lPd~~~R~~I 360 (437)
T 4b4t_L 286 IGGRRFSEGTSADREIQRTLMELLTQMDGF-DNLGQTKIIMATNR---PDTLDPALLRPGRLD-RKVEIPLPNEAGRLEI 360 (437)
T ss_dssp SSCCCSSSCCSSTTHHHHHHHHHHHHHHSS-SCTTSSEEEEEESS---TTSSCTTTTSTTSEE-EEECCCCCCHHHHHHH
T ss_pred cccccccCCCCcchHHHHHHHHHHHHhhcc-cCCCCeEEEEecCC---chhhCHHHhCCCccc-eeeecCCcCHHHHHHH
Confidence 98643 1 2355555543 24567999999998 4678888876 477 6899999999999999
Q ss_pred HHHHhcCcccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 653 ISSRLKGIEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 653 l~~~l~~~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
|+.++.......+..++.+++.+.+++| |++ .+|+.|+..|.++ +...|+.+||..|+.++..
T Consensus 361 l~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~---~l~~eA~~~air~-------------~~~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 361 FKIHTAKVKKTGEFDFEAAVKMSDGFNGADIR---NCATEAGFFAIRD-------------DRDHINPDDLMKAVRKVAE 424 (437)
T ss_dssp HHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHH---HHHHHHHHHHHHT-------------TCSSBCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcccCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHc-------------CCCCCCHHHHHHHHHHHHh
Confidence 9999987665445457778887777776 554 5899999998765 3567999999999987754
Q ss_pred C
Q 003175 732 A 732 (842)
Q Consensus 732 ~ 732 (842)
.
T Consensus 425 ~ 425 (437)
T 4b4t_L 425 V 425 (437)
T ss_dssp T
T ss_pred c
Confidence 3
No 12
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.1e-21 Score=218.36 Aligned_cols=194 Identities=23% Similarity=0.301 Sum_probs=150.5
Q ss_pred ccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003175 485 CLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNER 564 (842)
Q Consensus 485 ~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~ 564 (842)
.+++++|||||||||||++|+++|++++ .+|+.+++..+.+. ........+...
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~----------~~~~~v~~~~l~~~----------------~~Ge~e~~ir~l 257 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTK----------AAFIRVNGSEFVHK----------------YLGEGPRMVRDV 257 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHT----------CEEEEEEGGGTCCS----------------SCSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC----------CCeEEEecchhhcc----------------ccchhHHHHHHH
Confidence 4578999999999999999999999987 77999999887653 112344566777
Q ss_pred hhcccCCCCCCCCcEEEEEecCcccccCC-----------h---HHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhh
Q 003175 565 FLDGKKIGKEDDRPCILLIDELDLLVTRN-----------Q---SVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRI 630 (842)
Q Consensus 565 f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~---~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l 630 (842)
|..+.. ..|+||||||+|.+...+ + ..|++.++.. .....++|||+||. ++.|++++
T Consensus 258 F~~A~~-----~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~-~~~~~v~vI~aTN~---~~~LD~Al 328 (428)
T 4b4t_K 258 FRLARE-----NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF-DQSTNVKVIMATNR---ADTLDPAL 328 (428)
T ss_dssp HHHHHH-----TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS-CSSCSEEEEEEESC---SSSCCHHH
T ss_pred HHHHHH-----cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC-CCCCCEEEEEecCC---hhhcChhh
Confidence 766643 378999999999998643 1 2344445543 24567999999998 57889999
Q ss_pred hc--cCCceeEEec-CCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccC
Q 003175 631 SS--RMGVQRLCFG-PYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSN 706 (842)
Q Consensus 631 ~s--R~~~~~i~f~-p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~ 706 (842)
.+ ||. +.|.|| +++.+++..||+.++.......+..++.+++.+.+++| |+. .+|+.|+..|.++
T Consensus 329 lRpGRfd-~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~---~l~~eA~~~a~r~------- 397 (428)
T 4b4t_K 329 LRPGRLD-RKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIA---AIMQEAGLRAVRK------- 397 (428)
T ss_dssp HSSSSEE-EEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHH---HHHHHHHHHHHHT-------
T ss_pred hcCCcce-EEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHH---HHHHHHHHHHHHC-------
Confidence 87 887 689997 78999999999999987765555557888888877777 454 5899999998766
Q ss_pred CCcCCcCCCcccHHHHHHHHHHHh
Q 003175 707 KNSASVGKSLVGMADVEAAIQEMF 730 (842)
Q Consensus 707 ~~~~~~~~~~It~~dv~~A~~~~~ 730 (842)
+...|+.+||.+|+....
T Consensus 398 ------~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 398 ------NRYVILQSDLEEAYATQV 415 (428)
T ss_dssp ------TCSSBCHHHHHHHHHHHS
T ss_pred ------CCCCCCHHHHHHHHHHhh
Confidence 356799999999997653
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.85 E-value=1.9e-20 Score=203.99 Aligned_cols=236 Identities=17% Similarity=0.198 Sum_probs=165.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhh------cCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 460 KFLPCRNKEMEDITAFIKGAT------CDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i------~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
+.+.|.+..++.|...+...+ ..+..++.++||+||||||||++++++++++. ..+++++|..+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~----------~~~~~v~~~~l 87 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN----------STFFSVSSSDL 87 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT----------CEEEEEEHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC----------CCEEEEchHHH
Confidence 345677777777776664322 22223467899999999999999999999875 56999998654
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhhc
Q 003175 534 ASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNILD 602 (842)
Q Consensus 534 ~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll~ 602 (842)
.+. . .......+...|..+.. ..+.||||||+|.|.... ++.|+..++
T Consensus 88 ~~~----------~------~g~~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 146 (322)
T 3eie_A 88 VSK----------W------MGESEKLVKQLFAMARE-----NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 146 (322)
T ss_dssp HTT----------T------GGGHHHHHHHHHHHHHH-----TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHG
T ss_pred hhc----------c------cchHHHHHHHHHHHHHh-----cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc
Confidence 221 0 01222334444544322 367999999999998643 355666666
Q ss_pred CCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcC
Q 003175 603 WPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGD 681 (842)
Q Consensus 603 ~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd 681 (842)
........++||++||. ++.+++.+.+||. ..|.|++|+.+++.+||+.++...+ .+++..++.+++.+.+++|
T Consensus 147 ~~~~~~~~v~vi~atn~---~~~ld~al~~Rf~-~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg- 221 (322)
T 3eie_A 147 GVGNDSQGVLVLGATNI---PWQLDSAIRRRFE-RRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSG- 221 (322)
T ss_dssp GGGTSCCCEEEEEEESC---GGGSCHHHHHHCC-EEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCH-
T ss_pred cccccCCceEEEEecCC---hhhCCHHHHcccC-eEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCH-
Confidence 55445678999999997 5678999999998 6899999999999999999998765 5688888888887765554
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC------------------------------CcCCcCCCcccHHHHHHHHHHHhh
Q 003175 682 ARRALEICRRAAEIADYRIKKQTSNK------------------------------NSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 682 ~R~al~ll~~A~~~A~~~~~~~~~~~------------------------------~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
+.+..+|+.|+..|.++........ .........|+++||.+|+..+..
T Consensus 222 -~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~p 300 (322)
T 3eie_A 222 -SDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRP 300 (322)
T ss_dssp -HHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCC
T ss_pred -HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCC
Confidence 3334689999998887754321000 000011256999999999997766
Q ss_pred C
Q 003175 732 A 732 (842)
Q Consensus 732 ~ 732 (842)
+
T Consensus 301 s 301 (322)
T 3eie_A 301 T 301 (322)
T ss_dssp S
T ss_pred C
Confidence 4
No 14
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.83 E-value=8.5e-20 Score=201.30 Aligned_cols=238 Identities=16% Similarity=0.208 Sum_probs=163.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhc------CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 460 KFLPCRNKEMEDITAFIKGATC------DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~------~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
+.+.|.+..++.|...+...+. .+..+++++||+||||||||++++++++++. ..+++++|..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~----------~~~~~v~~~~l 120 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN----------STFFSVSSSDL 120 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT----------CEEEEEEHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC----------CCEEEeeHHHH
Confidence 4467777777777777643322 1222467899999999999999999999985 56899988653
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhhc
Q 003175 534 ASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNILD 602 (842)
Q Consensus 534 ~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll~ 602 (842)
.+. +.| .....+...|..+.. ..++||||||+|.|.... ++.|+..++
T Consensus 121 ~~~----------~~g------~~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 179 (355)
T 2qp9_X 121 VSK----------WMG------ESEKLVKQLFAMARE-----NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 179 (355)
T ss_dssp HSC----------C---------CHHHHHHHHHHHHH-----TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHH
T ss_pred hhh----------hcc------hHHHHHHHHHHHHHH-----cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhh
Confidence 221 001 112233344433321 367999999999998642 355666666
Q ss_pred CCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcC
Q 003175 603 WPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGD 681 (842)
Q Consensus 603 ~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd 681 (842)
........++||++||. ++.+++.+.+||. ..+.|++++.+++.+||+.++...+ .+++..++.+++.+.+++|
T Consensus 180 ~~~~~~~~v~vI~atn~---~~~ld~al~rRf~-~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg- 254 (355)
T 2qp9_X 180 GVGNDSQGVLVLGATNI---PWQLDSAIRRRFE-RRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSG- 254 (355)
T ss_dssp HCC---CCEEEEEEESC---GGGSCHHHHHTCC-EEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCH-
T ss_pred cccccCCCeEEEeecCC---cccCCHHHHcccC-EEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCH-
Confidence 55444678999999998 4678899999998 6899999999999999999998765 4688888988888755444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-----CC-------------------------CcCCcCCCcccHHHHHHHHHHHhh
Q 003175 682 ARRALEICRRAAEIADYRIKKQTS-----NK-------------------------NSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 682 ~R~al~ll~~A~~~A~~~~~~~~~-----~~-------------------------~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
+.+..+|+.|+..|..+...... .. .........|+++||..|+..+..
T Consensus 255 -~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~p 333 (355)
T 2qp9_X 255 -SDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRP 333 (355)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCC
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCC
Confidence 44446899999998876432210 00 000012346999999999998877
Q ss_pred ChH
Q 003175 732 APH 734 (842)
Q Consensus 732 ~~~ 734 (842)
+..
T Consensus 334 s~~ 336 (355)
T 2qp9_X 334 TVN 336 (355)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 15
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.82 E-value=2.3e-19 Score=199.23 Aligned_cols=249 Identities=17% Similarity=0.241 Sum_probs=169.5
Q ss_pred ccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 453 LLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 453 L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
+.+.+..+.++|++..++.+..++.....+. ..++++||+||||||||++++++++.+... ..++.++|..
T Consensus 37 ~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~~~--------~~~~~~~~~~ 107 (368)
T 3uk6_A 37 LEPRQASQGMVGQLAARRAAGVVLEMIREGK-IAGRAVLIAGQPGTGKTAIAMGMAQALGPD--------TPFTAIAGSE 107 (368)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHHHHTTC-CTTCEEEEEESTTSSHHHHHHHHHHHHCSS--------CCEEEEEGGG
T ss_pred cCcCcchhhccChHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCCCHHHHHHHHHHHhccc--------CCcccccchh
Confidence 4455555779999999888776665544433 346899999999999999999999998632 4588888766
Q ss_pred CCC----hHHHHHHHHHHHhCC----------------------------CCC-----HHHHHHHHHHHhhcccCCCCCC
Q 003175 533 LAS----PENIYRVIYEALSGH----------------------------RVS-----WKKALHSLNERFLDGKKIGKED 575 (842)
Q Consensus 533 ~~s----~~~~~~~i~~~l~g~----------------------------~~~-----~~~~~~~L~~~f~~~~~~~~~~ 575 (842)
+.+ ...++..++....|. ..+ .......+..........+...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~ 187 (368)
T 3uk6_A 108 IFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAE 187 (368)
T ss_dssp GSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC--
T ss_pred hhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccc
Confidence 332 222222222211110 000 1122222322222111111111
Q ss_pred CCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC--------CCCccccchhhhccCCceeEEecCCCHH
Q 003175 576 DRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT--------MDLPEKLLPRISSRMGVQRLCFGPYNHQ 647 (842)
Q Consensus 576 ~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~--------~dl~~~l~~~l~sR~~~~~i~f~p~~~~ 647 (842)
..+.||||||+|.|....++.|+.+++.. ..+++++++.+. .+.+..+++.+.+||.. |.|+||+.+
T Consensus 188 ~~~~vl~IDEi~~l~~~~~~~L~~~le~~---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~--i~~~~~~~~ 262 (368)
T 3uk6_A 188 IIPGVLFIDEVHMLDIESFSFLNRALESD---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI--VSTTPYSEK 262 (368)
T ss_dssp -CBCEEEEESGGGSBHHHHHHHHHHTTCT---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE--EEECCCCHH
T ss_pred ccCceEEEhhccccChHHHHHHHHHhhCc---CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE--EEecCCCHH
Confidence 23679999999999887788888888754 345666655421 12356788999999964 899999999
Q ss_pred HHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHH
Q 003175 648 QLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAI 726 (842)
Q Consensus 648 e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~ 726 (842)
++.+||..++...+ .+++++++++++.... |++|.++++|+.|...|..+ +...|+.+||.+|+
T Consensus 263 e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~--G~~r~~~~ll~~a~~~A~~~-------------~~~~It~~~v~~a~ 327 (368)
T 3uk6_A 263 DTKQILRIRCEEEDVEMSEDAYTVLTRIGLE--TSLRYAIQLITAASLVCRKR-------------KGTEVQVDDIKRVY 327 (368)
T ss_dssp HHHHHHHHHHHHTTCCBCHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHT-------------TCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHh-------------CCCCCCHHHHHHHH
Confidence 99999999987544 6889999998877532 99999999999999998755 35689999999999
Q ss_pred HHHh
Q 003175 727 QEMF 730 (842)
Q Consensus 727 ~~~~ 730 (842)
..+.
T Consensus 328 ~~~~ 331 (368)
T 3uk6_A 328 SLFL 331 (368)
T ss_dssp HHSB
T ss_pred HHhc
Confidence 7644
No 16
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.82 E-value=2e-19 Score=195.66 Aligned_cols=204 Identities=19% Similarity=0.226 Sum_probs=144.0
Q ss_pred CCCcHHHHHHHHHHHHHhhc------CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC
Q 003175 462 LPCRNKEMEDITAFIKGATC------DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS 535 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~------~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s 535 (842)
+.|.+..++.|.+.+...+. +...+++++||+||||||||++++++++++.. ..|+++++..+.+
T Consensus 14 i~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---------~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 14 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---------STFFSISSSDLVS 84 (322)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---------CEEEEEECCSSCC
T ss_pred hcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---------CcEEEEEhHHHHh
Confidence 44555555555555543222 22224689999999999999999999998731 5699999987654
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhhcCC
Q 003175 536 PENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNILDWP 604 (842)
Q Consensus 536 ~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll~~~ 604 (842)
. ..|. ....+...|..+.. ..++||||||+|.|.... .+.|+..++..
T Consensus 85 ~----------~~g~------~~~~~~~lf~~a~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~ 143 (322)
T 1xwi_A 85 K----------WLGE------SEKLVKNLFQLARE-----NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV 143 (322)
T ss_dssp S----------SCCS------CHHHHHHHHHHHHH-----TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCS
T ss_pred h----------hhhH------HHHHHHHHHHHHHh-----cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcc
Confidence 2 0111 11223334433221 367999999999997543 13455566654
Q ss_pred CCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHH
Q 003175 605 TKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDAR 683 (842)
Q Consensus 605 ~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R 683 (842)
.....+++||++||.+ +.+++.+.+||. ..+.|++++.+++.+||+.++...+ .+++..++.+++.+.+++| +
T Consensus 144 ~~~~~~v~vI~atn~~---~~ld~al~rRf~-~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sg--a 217 (322)
T 1xwi_A 144 GVDNDGILVLGATNIP---WVLDSAIRRRFE-KRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSG--A 217 (322)
T ss_dssp SSCCTTEEEEEEESCT---TTSCHHHHHTCC-EEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCH--H
T ss_pred cccCCCEEEEEecCCc---ccCCHHHHhhcC-eEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCH--H
Confidence 4456789999999985 678899999998 6899999999999999999998765 4688888888887766555 3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 003175 684 RALEICRRAAEIADYRIK 701 (842)
Q Consensus 684 ~al~ll~~A~~~A~~~~~ 701 (842)
....+|+.|+..|.++..
T Consensus 218 dl~~l~~~A~~~a~r~~~ 235 (322)
T 1xwi_A 218 DISIIVRDALMQPVRKVQ 235 (322)
T ss_dssp HHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334689999998887653
No 17
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.82 E-value=1.2e-19 Score=194.07 Aligned_cols=224 Identities=21% Similarity=0.277 Sum_probs=161.0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcC-------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEec
Q 003175 458 LPKFLPCRNKEMEDITAFIKGATCD-------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNG 530 (842)
Q Consensus 458 ~p~~L~gRe~e~~~l~~~l~~~i~~-------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~ 530 (842)
..+.++|.+++++.|..++...+.. +...+.++||+||||||||++++++++.+. ..++++++
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~----------~~~~~v~~ 84 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN----------ATFIRVVG 84 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT----------CEEEEEEG
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC----------CCEEEEeh
Confidence 3456889999999998888765443 112478899999999999999999999875 56999998
Q ss_pred ccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHH
Q 003175 531 LKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYN 599 (842)
Q Consensus 531 ~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ 599 (842)
..+.... . ......+...|..... ..+.||||||+|.+..+. +..|..
T Consensus 85 ~~~~~~~--------------~--~~~~~~~~~~~~~~~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ 143 (285)
T 3h4m_A 85 SELVKKF--------------I--GEGASLVKDIFKLAKE-----KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQ 143 (285)
T ss_dssp GGGCCCS--------------T--THHHHHHHHHHHHHHH-----TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHH
T ss_pred HHHHHhc--------------c--chHHHHHHHHHHHHHH-----cCCeEEEEECHHHhcccCccccCCccHHHHHHHHH
Confidence 8765421 0 1112223333333221 257899999999996432 456666
Q ss_pred hhcCC--CCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHH
Q 003175 600 ILDWP--TKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKV 675 (842)
Q Consensus 600 ll~~~--~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~ 675 (842)
+++.. .....+++||+++|. ++.+++.+.+ ||. ..+.|++|+.+++.+|++.++.......+..++.+++..
T Consensus 144 ll~~~~~~~~~~~~~vI~ttn~---~~~l~~~l~~~~Rf~-~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~ 219 (285)
T 3h4m_A 144 LLAEMDGFDARGDVKIIGATNR---PDILDPAILRPGRFD-RIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMT 219 (285)
T ss_dssp HHHHHHTTCSSSSEEEEEECSC---GGGBCHHHHSTTSEE-EEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHC
T ss_pred HHHHhhCCCCCCCEEEEEeCCC---chhcCHHHcCCCcCC-eEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHc
Confidence 66532 123568999999987 4778888888 887 589999999999999999999876544454566666665
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 676 AAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 676 ~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
.++ ..+.+..+|+.|...|..+ +...|+.+||.+|+.++..
T Consensus 220 ~g~--~~~~i~~l~~~a~~~a~~~-------------~~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 220 EGC--VGAELKAICTEAGMNAIRE-------------LRDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp TTC--CHHHHHHHHHHHHHHHHHT-------------TCSSBCHHHHHHHHHHHHH
T ss_pred CCC--CHHHHHHHHHHHHHHHHHh-------------ccCcCCHHHHHHHHHHHHh
Confidence 443 3444456899998888765 3567999999999987754
No 18
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.80 E-value=3.6e-18 Score=187.38 Aligned_cols=268 Identities=15% Similarity=0.156 Sum_probs=193.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++|++..++.+..++......+. ...+++|+||||||||++++++++.+. ..|+.++|..+.....+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~-~~~~vll~G~~GtGKT~la~~ia~~~~----------~~~~~~~~~~~~~~~~~ 97 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNE-CLDHILFSGPAGLGKTTLANIISYEMS----------ANIKTTAAPMIEKSGDL 97 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTS-CCCCEEEECSTTSSHHHHHHHHHHHTT----------CCEEEEEGGGCCSHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCC-CCCeEEEECcCCCCHHHHHHHHHHHhC----------CCeEEecchhccchhHH
Confidence 4589999999999999988765433 357899999999999999999988865 45899999876543221
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC-------------
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK------------- 606 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~------------- 606 (842)
...+... ..+.+|||||+|.+....+..|+.+++....
T Consensus 98 ----------------------~~~~~~~-------~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~ 148 (338)
T 3pfi_A 98 ----------------------AAILTNL-------SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTI 148 (338)
T ss_dssp ----------------------HHHHHTC-------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCC
T ss_pred ----------------------HHHHHhc-------cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccce
Confidence 1122211 2568999999999988778888888875321
Q ss_pred --CCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHH
Q 003175 607 --PNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDAR 683 (842)
Q Consensus 607 --~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R 683 (842)
...+++||++||. ...+++.+.+||. ..+.|++|+.+++.+|+...+...+ .+++++++.+++ ...|++|
T Consensus 149 ~~~~~~~~~i~atn~---~~~l~~~L~~R~~-~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~---~~~G~~r 221 (338)
T 3pfi_A 149 KIDLPKFTLIGATTR---AGMLSNPLRDRFG-MQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAK---RSRSTPR 221 (338)
T ss_dssp CCCCCCCEEEEEESC---GGGSCHHHHTTCS-EEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH---TTTTCHH
T ss_pred ecCCCCeEEEEeCCC---ccccCHHHHhhcC-EEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHCcCHH
Confidence 0114899999998 4568889999997 5899999999999999999887554 578888888776 3589999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHHHHHcCCcc
Q 003175 684 RALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYELYKTGMGE 763 (842)
Q Consensus 684 ~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~~~~~g~~~ 763 (842)
.+.++++++...+... +...|+.+++..++...... ...+...++.++.+++.. +...
T Consensus 222 ~l~~~l~~~~~~a~~~-------------~~~~i~~~~~~~~~~~~~~~-----~~~l~~~e~~~l~~l~~~----~~~~ 279 (338)
T 3pfi_A 222 IALRLLKRVRDFADVN-------------DEEIITEKRANEALNSLGVN-----ELGFDAMDLRYLELLTAA----KQKP 279 (338)
T ss_dssp HHHHHHHHHHHHHHHT-------------TCSEECHHHHHHHHHHHTCC-----TTCCCHHHHHHHHHHHHS----CSCC
T ss_pred HHHHHHHHHHHHHHhh-------------cCCccCHHHHHHHHHHhCCc-----ccCCCHHHHHHHHHHHHh----cCCC
Confidence 9999999998877644 24679999999988764322 234556666677666542 3344
Q ss_pred eeHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH-HhcccceEEec
Q 003175 764 TNFEKLAMTVSSLCTSNGEIFPSWDALLRVGC-KLGECRIILCE 806 (842)
Q Consensus 764 ~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~-~L~~~~li~~~ 806 (842)
++..++.+ ..|+ +...+...+. .|.+.|+|...
T Consensus 280 ~~~~~~a~-------~lg~---~~~tl~~~l~~~l~~~gli~~~ 313 (338)
T 3pfi_A 280 IGLASIAA-------ALSE---DENTIEDVIEPYLLANGYIERT 313 (338)
T ss_dssp BCHHHHHH-------HTTC---CHHHHHHTTHHHHHHTTSEEEE
T ss_pred chHHHHHH-------HhCC---CHHHHHHHHhHHHHHcCceecC
Confidence 55554443 3333 3344444444 56677887653
No 19
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.79 E-value=1.9e-20 Score=222.72 Aligned_cols=248 Identities=21% Similarity=0.282 Sum_probs=145.9
Q ss_pred ccccCcccHHHHHHHhccccCC-CCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHh
Q 003175 437 HVRCHKQTELERAKATLLLATL-PKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEV 515 (842)
Q Consensus 437 ~~~~~~~~~~~~~~~~L~~~~~-p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~ 515 (842)
.+.|.++.++..+++.|..... |...+. .....+..+++++|||||||||||+++++++.+++
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~-------------~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~--- 536 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPD-------------KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--- 536 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSG-------------GGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT---
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHH-------------HHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC---
Confidence 4789999999999999987653 322220 01122333578899999999999999999999987
Q ss_pred hcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC--
Q 003175 516 ESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-- 593 (842)
Q Consensus 516 ~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-- 593 (842)
..|+.+++..+.+. ..| +..+.+.++|..++. ..|+||||||+|.|...+
T Consensus 537 -------~~f~~v~~~~l~s~----------~vG------ese~~vr~lF~~Ar~-----~~P~IifiDEiDsl~~~R~~ 588 (806)
T 3cf2_A 537 -------ANFISIKGPELLTM----------WFG------ESEANVREIFDKARQ-----AAPCVLFFDELDSIAKARGG 588 (806)
T ss_dssp -------CEEEECCHHHHHTT----------TCS------SCHHHHHHHHHHHHT-----TCSEEEECSCGGGCC-----
T ss_pred -------CceEEeccchhhcc----------ccc------hHHHHHHHHHHHHHH-----cCCceeechhhhHHhhccCC
Confidence 67888876553321 222 223567777777643 378999999999998643
Q ss_pred ------------hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcC
Q 003175 594 ------------QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKG 659 (842)
Q Consensus 594 ------------~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~ 659 (842)
.+.|+..++... ....|+|||+||+ ++.|++.+.+ ||. +.|+|+.|+.+++.+||+.++++
T Consensus 589 ~~~~~~~~~~rv~~~lL~~mdg~~-~~~~V~vi~aTN~---p~~lD~AllRpgRfd-~~i~v~lPd~~~R~~il~~~l~~ 663 (806)
T 3cf2_A 589 NIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNR---PDIIDPAILRPGRLD-QLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp ---------CHHHHHHHHHHHSSC-SSSSEEEECC-CC---SSSSCHHHHSTTTSC-CEEEC-----CHHHHTTTTTSSC
T ss_pred CCCCCchHHHHHHHHHHHHHhCCC-CCCCEEEEEeCCC---chhCCHhHcCCCcce-EEEEECCcCHHHHHHHHHHHhcC
Confidence 134566666543 4567999999998 4678999987 998 68999999999999999999987
Q ss_pred cccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCC------------CcCCcCCCcccHHHHHHHH
Q 003175 660 IEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNK------------NSASVGKSLVGMADVEAAI 726 (842)
Q Consensus 660 ~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~------------~~~~~~~~~It~~dv~~A~ 726 (842)
.+.-.+..++.+++.+.+++| |+. .+|+.|+..|.++........ .........|+++||.+|+
T Consensus 664 ~~~~~~~dl~~la~~t~g~SGadi~---~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al 740 (806)
T 3cf2_A 664 SPVAKDVDLEFLAKMTNGFSGADLT---EICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAM 740 (806)
T ss_dssp C--CCC----------------CHH---HHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC
T ss_pred CCCCCCCCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHH
Confidence 765556667888999888888 665 489999999987643211000 0011123469999999999
Q ss_pred HHHhhChHHH
Q 003175 727 QEMFQAPHIQ 736 (842)
Q Consensus 727 ~~~~~~~~~~ 736 (842)
..+..+...+
T Consensus 741 ~~~~pSvs~~ 750 (806)
T 3cf2_A 741 RFARRSVSDN 750 (806)
T ss_dssp ----------
T ss_pred HhCCCCCCHH
Confidence 8877654433
No 20
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=99.79 E-value=2.1e-20 Score=183.31 Aligned_cols=101 Identities=24% Similarity=0.546 Sum_probs=95.3
Q ss_pred hhhhhhhhceeeccCCceEEEEEeecCCcccccCCCCCcccccccccCCccccccchhccceeeeCcccccccccC---C
Q 003175 266 DLWAANIQSMWKEVDGNYWCRVFWYMIPEETAAGRQPHNLRRELYRTNDFANIEMESIIRHCSVMSPKDFVKANDQ---G 342 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~g~~~~~~~w~~~peEt~~~~~~~~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~~~~~---~ 342 (842)
..|||+|.+||++.+|+.|++|+|||||+||.++..+.+++||||+|+++|+|++++|+|||.||+..+|.+++|. +
T Consensus 43 ~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~~~~~~~~~~EvF~S~~~d~~~~~~I~gkC~V~~~~~~~~~~p~~~~~ 122 (174)
T 1w4s_A 43 QPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRD 122 (174)
T ss_dssp CCEEEEEEEEEECTTCCEEEEEEEEECGGGSCCCTTCEEETTEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTEEETTCCG
T ss_pred CCEEEEEEEEEEcCCCCEEEEEEEecCHHHcccccCCcCCCCeeEEeCCcceecHHHeeeeEEEEECchhhhcCcCCCCC
Confidence 3579999999999999999999999999999999888899999999999999999999999999999999998874 4
Q ss_pred CCEEEEeeEEecCccceeecccCC
Q 003175 343 DDIFLCEYEYDIHWHSFKRIADID 366 (842)
Q Consensus 343 ~~~~~C~~~y~~~~~~fk~i~~~~ 366 (842)
+++|||++.||..++.|+++..|.
T Consensus 123 ~dvF~c~~~Yd~~~~~f~~i~~w~ 146 (174)
T 1w4s_A 123 EDVYVCESRYSAKTKSFKKIKLWT 146 (174)
T ss_dssp GGEEEEEEEEETTTTEEEECSSCC
T ss_pred CCEEEEeEEEccccCeEccCccCC
Confidence 799999999999999999999885
No 21
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.78 E-value=3.9e-19 Score=191.66 Aligned_cols=235 Identities=18% Similarity=0.293 Sum_probs=155.8
Q ss_pred CCCCcHHHHHHHHHHHHHhhcC-------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 461 FLPCRNKEMEDITAFIKGATCD-------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~-------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
.+.|.+..++.|.+.+...+.. +...+.+++|+||||||||++++++++.+. ..+++++|..+
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~----------~~~i~v~~~~l 85 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ----------ANFISIKGPEL 85 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT----------CEEEEECHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC----------CCEEEEEhHHH
Confidence 3566677667776666543211 122478899999999999999999999875 56899987643
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC--------------hHHHHH
Q 003175 534 ASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN--------------QSVLYN 599 (842)
Q Consensus 534 ~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~--------------~~~L~~ 599 (842)
. ..+.|... ..+...|..+.. ..++||||||+|.|.... +..|+.
T Consensus 86 ~----------~~~~g~~~------~~~~~~f~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~ 144 (301)
T 3cf0_A 86 L----------TMWFGESE------ANVREIFDKARQ-----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILT 144 (301)
T ss_dssp H----------HHHHTTCT------THHHHHHHHHHH-----TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHH
T ss_pred H----------hhhcCchH------HHHHHHHHHHHh-----cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHH
Confidence 2 22223221 122333433321 257999999999986421 245666
Q ss_pred hhcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHH
Q 003175 600 ILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAA 677 (842)
Q Consensus 600 ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~ 677 (842)
.++... ...+++||++||. ++.+++.+.+ ||. ..|.|++|+.+++.+|++.++...+...+..++.++....+
T Consensus 145 ~l~~~~-~~~~v~vi~atn~---~~~ld~al~r~gRf~-~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g 219 (301)
T 3cf0_A 145 EMDGMS-TKKNVFIIGATNR---PDIIDPAILRPGRLD-QLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 219 (301)
T ss_dssp HHHSSC-TTSSEEEEEEESC---GGGSCGGGGSTTSSC-EEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSS
T ss_pred Hhhccc-CCCCEEEEEecCC---ccccChHHhcCCccc-eEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCC
Confidence 666432 3568999999998 4667888877 898 68999999999999999999987654344446666666655
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHHhhhccCC--------Cc----CCcCCCcccHHHHHHHHHHHhhCh
Q 003175 678 ISGDARRALEICRRAAEIADYRIKKQTSNK--------NS----ASVGKSLVGMADVEAAIQEMFQAP 733 (842)
Q Consensus 678 ~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~--------~~----~~~~~~~It~~dv~~A~~~~~~~~ 733 (842)
++|. ...++|++|+..|..+........ .. .......|+.+||..|+.++..+.
T Consensus 220 ~sg~--dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 285 (301)
T 3cf0_A 220 FSGA--DLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 285 (301)
T ss_dssp CCHH--HHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSS
T ss_pred CCHH--HHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCC
Confidence 5553 445689999998876643211100 00 001124689999999998776543
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.78 E-value=2.5e-18 Score=181.36 Aligned_cols=223 Identities=20% Similarity=0.281 Sum_probs=143.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhcC------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 459 PKFLPCRNKEMEDITAFIKGATCD------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 459 p~~L~gRe~e~~~l~~~l~~~i~~------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
.+.+.|.+..++.|.+++...... +...+.++||+||||||||++++++++++. ..+++++|..
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~----------~~~~~~~~~~ 74 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ----------VPFLAMAGAE 74 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT----------CCEEEEETTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC----------CCEEEechHH
Confidence 356788888888888777543211 112467899999999999999999999875 5689999987
Q ss_pred CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC------------ChHHHHHh
Q 003175 533 LASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR------------NQSVLYNI 600 (842)
Q Consensus 533 ~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~------------~~~~L~~l 600 (842)
+.+.. .| .....+...|..+.. ..+.||||||+|.|... .+..|..+
T Consensus 75 ~~~~~----------~~------~~~~~~~~~~~~a~~-----~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~l 133 (262)
T 2qz4_A 75 FVEVI----------GG------LGAARVRSLFKEARA-----RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQL 133 (262)
T ss_dssp TSSSS----------TT------HHHHHHHHHHHHHHH-----TCSEEEEEECC-------------------CHHHHHH
T ss_pred HHhhc----------cC------hhHHHHHHHHHHHHh-----cCCeEEEEeCcchhhccccccccCccchhHHHHHHHH
Confidence 65420 00 112233334433321 25799999999999532 23445555
Q ss_pred hcCCC--CCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCccc-CcHH-HHHHHHHH
Q 003175 601 LDWPT--KPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEA-FEKQ-AIEFASRK 674 (842)
Q Consensus 601 l~~~~--~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~-~~~~-~l~~ia~~ 674 (842)
++... ....+++||+++|. ++.+++.+.+ ||. ..+.|++++.+++.+|++.++...+. .+.+ .++.+++.
T Consensus 134 l~~~~~~~~~~~~~vi~~tn~---~~~ld~~l~~~~R~~-~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~ 209 (262)
T 2qz4_A 134 LVEMDGMGTTDHVIVLASTNR---ADILDGALMRPGRLD-RHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAEL 209 (262)
T ss_dssp HHHHHTCCTTCCEEEEEEESC---GGGGGSGGGSTTSCC-EEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHT
T ss_pred HHHhhCcCCCCCEEEEecCCC---hhhcCHHHhcCCcCC-eEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence 43211 23468999999997 4677888888 997 68999999999999999999876542 2222 33555555
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 675 VAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 675 ~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
..+++| +....+|+.|+..|..+ +...|+.+||..|+.++..
T Consensus 210 ~~g~~~--~~l~~l~~~a~~~a~~~-------------~~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 210 TPGFSG--ADIANICNEAALHAARE-------------GHTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp CTTCCH--HHHHHHHHHHHTC---------------------CCBCCHHHHHHHHHH
T ss_pred CCCCCH--HHHHHHHHHHHHHHHHc-------------CCCCCCHHHHHHHHHHhcc
Confidence 433333 44556888888777654 2467999999999987754
No 23
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.78 E-value=3.2e-19 Score=212.28 Aligned_cols=229 Identities=21% Similarity=0.296 Sum_probs=159.6
Q ss_pred CCCcHHHHHHHHHHHHHhhcC-------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCC
Q 003175 462 LPCRNKEMEDITAFIKGATCD-------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLA 534 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~-------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~ 534 (842)
+.|.++++++|.+.+.-.+.. +..+++++|||||||||||+|+++++++++ ..+++|+|..+.
T Consensus 206 IgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg----------~~~~~v~~~~l~ 275 (806)
T 3cf2_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----------AFFFLINGPEIM 275 (806)
T ss_dssp CCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT----------CEEEEEEHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC----------CeEEEEEhHHhh
Confidence 345555555555555443322 223578999999999999999999999887 679999987643
Q ss_pred ChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh-----------HHHHHhhcC
Q 003175 535 SPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ-----------SVLYNILDW 603 (842)
Q Consensus 535 s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~-----------~~L~~ll~~ 603 (842)
+. ...+....+.+.|..+.. ..|+||||||+|.|..++. +.|+.+++.
T Consensus 276 sk----------------~~gese~~lr~lF~~A~~-----~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg 334 (806)
T 3cf2_A 276 SK----------------LAGESESNLRKAFEEAEK-----NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG 334 (806)
T ss_dssp SS----------------CTTHHHHHHHHHHHHHTT-----SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHH
T ss_pred cc----------------cchHHHHHHHHHHHHHHH-----cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhc
Confidence 32 122455667778877643 4789999999999987531 234444543
Q ss_pred CCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhc-
Q 003175 604 PTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISG- 680 (842)
Q Consensus 604 ~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~G- 680 (842)
.. ...+|+||++||++ +.+++.+++ ||. ++|.|+.|+.+++.+||+.++......++..++.++..+.+++|
T Consensus 335 ~~-~~~~V~VIaaTN~~---d~LD~ALrR~GRFd-~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfsga 409 (806)
T 3cf2_A 335 LK-QRAHVIVMAATNRP---NSIDPALRRFGRFD-REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGA 409 (806)
T ss_dssp CC-GGGCEEEEEECSST---TTSCTTTTSTTSSC-EEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHH
T ss_pred cc-ccCCEEEEEecCCh---hhcCHHHhCCcccc-eEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHH
Confidence 32 35689999999994 677888887 898 79999999999999999999987765556567788888777666
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhccCCCc----CCcCCCcccHHHHHHHHHHH
Q 003175 681 DARRALEICRRAAEIADYRIKKQTSNKNS----ASVGKSLVGMADVEAAIQEM 729 (842)
Q Consensus 681 d~R~al~ll~~A~~~A~~~~~~~~~~~~~----~~~~~~~It~~dv~~A~~~~ 729 (842)
|+. .+|+.|+..|..+.......... .......|+.+||..|+..+
T Consensus 410 DL~---~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~ 459 (806)
T 3cf2_A 410 DLA---ALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSS
T ss_pred HHH---HHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhC
Confidence 443 58999998887764432211100 00123456667777666554
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.78 E-value=1.8e-18 Score=196.23 Aligned_cols=206 Identities=19% Similarity=0.240 Sum_probs=140.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhc------CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 460 KFLPCRNKEMEDITAFIKGATC------DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~------~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
+.+.|.+..++.|...+...+. +...+++++||+||||||||++++++++++. ...|+++++..+
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~---------~~~~~~v~~~~l 204 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---------NSTFFSISSSDL 204 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC---------SSEEEEECCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC---------CCCEEEEeHHHH
Confidence 4466777777777766643221 1122468999999999999999999999872 156999998765
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC--------hHH---HHHhhc
Q 003175 534 ASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN--------QSV---LYNILD 602 (842)
Q Consensus 534 ~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~--------~~~---L~~ll~ 602 (842)
.+. ..|... ..+...|..+.. ..+.||||||+|.|.... ..+ |+..++
T Consensus 205 ~~~----------~~g~~~------~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~ 263 (444)
T 2zan_A 205 VSK----------WLGESE------KLVKNLFQLARE-----NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQ 263 (444)
T ss_dssp -----------------CC------CTHHHHHHHHHH-----SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTT
T ss_pred Hhh----------hcchHH------HHHHHHHHHHHH-----cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHh
Confidence 432 112111 112223322211 267999999999996542 123 333344
Q ss_pred CCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcC
Q 003175 603 WPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGD 681 (842)
Q Consensus 603 ~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd 681 (842)
.......+++||++||. ++.+++.+.+||. ..+.|++++.+++..|+..++...+ .+++..++.+++.+.+++|
T Consensus 264 ~~~~~~~~v~vI~atn~---~~~ld~al~rRf~-~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sg- 338 (444)
T 2zan_A 264 GVGVDNDGILVLGATNI---PWVLDSAIRRRFE-KRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSG- 338 (444)
T ss_dssp CSSCCCSSCEEEEEESC---GGGSCHHHHTTCC-EEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCH-
T ss_pred CcccCCCCEEEEecCCC---ccccCHHHHhhcc-eEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCH-
Confidence 33334678999999998 4778999999998 5899999999999999999998765 4688888998888766555
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 003175 682 ARRALEICRRAAEIADYRIK 701 (842)
Q Consensus 682 ~R~al~ll~~A~~~A~~~~~ 701 (842)
+....+|+.|+..|.++..
T Consensus 339 -adl~~l~~~a~~~a~r~~~ 357 (444)
T 2zan_A 339 -ADISIIVRDALMQPVRKVQ 357 (444)
T ss_dssp -HHHHHHHHHHHTHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHH
Confidence 3334689999998887754
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.77 E-value=4.7e-18 Score=187.65 Aligned_cols=235 Identities=17% Similarity=0.251 Sum_probs=161.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCC------cccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDD------QCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~------~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
+.+.|++..++.|.+.+...+... ...+.++||+||||||||++++++++.+. ..+++++|..+
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~----------~~~~~i~~~~l 153 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG----------ATFFSISASSL 153 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT----------CEEEEEEGGGG
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC----------CeEEEEehHHh
Confidence 568999999999999887533221 12368999999999999999999998875 57999999876
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhhc
Q 003175 534 ASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNILD 602 (842)
Q Consensus 534 ~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll~ 602 (842)
.... .+ .....+...|..+.. ..+.||||||+|.|.... ++.|+..++
T Consensus 154 ~~~~--------------~g--~~~~~~~~~~~~a~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~ 212 (357)
T 3d8b_A 154 TSKW--------------VG--EGEKMVRALFAVARC-----QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLD 212 (357)
T ss_dssp CCSS--------------TT--HHHHHHHHHHHHHHH-----TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHH
T ss_pred hccc--------------cc--hHHHHHHHHHHHHHh-----cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHh
Confidence 5420 00 112223333332211 257999999999997643 233444444
Q ss_pred CC-CCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhc
Q 003175 603 WP-TKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISG 680 (842)
Q Consensus 603 ~~-~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~G 680 (842)
.. .....+++||++||. ++.+++.+.+||. ..+.|++++.+++.+||..++...+ .++++.++.+++.+.+++|
T Consensus 213 ~~~~~~~~~v~vI~atn~---~~~l~~~l~~Rf~-~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~ 288 (357)
T 3d8b_A 213 GATTSSEDRILVVGATNR---PQEIDEAARRRLV-KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSG 288 (357)
T ss_dssp C----CCCCEEEEEEESC---GGGBCHHHHTTCC-EEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCH
T ss_pred cccccCCCCEEEEEecCC---hhhCCHHHHhhCc-eEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCH
Confidence 32 234578999999998 4678899999998 5799999999999999999987654 5788888888887755444
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhC
Q 003175 681 DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 681 d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
+....+|+.|+..+.++....... .........|+.+||..|+..+..+
T Consensus 289 --~dl~~l~~~a~~~~ir~l~~~~~~-~~~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 289 --ADMTQLCREASLGPIRSLQTADIA-TITPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp --HHHHHHHHHHHTHHHHHCCC-----------CCCBCHHHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHHHHHHHhhhhhhc-cccccccCCcCHHHHHHHHHhcCCC
Confidence 333458888887776543211100 1111234679999999999887653
No 26
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.77 E-value=3.8e-18 Score=190.80 Aligned_cols=235 Identities=17% Similarity=0.255 Sum_probs=155.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCC------cccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDD------QCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~------~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
+.++|++..++.|..++....... ...+.++||+||||||||++|+++++++. ..|++++|..+
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~----------~~~~~v~~~~l 184 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN----------ATFFNISAASL 184 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT----------CEEEEECSCCC
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc----------CcEEEeeHHHh
Confidence 568899999999999886544321 12368999999999999999999988865 67999999887
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhhc
Q 003175 534 ASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNILD 602 (842)
Q Consensus 534 ~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll~ 602 (842)
.+.. .| .....+...|..+.. ..+.||||||||.|.... +..|+..++
T Consensus 185 ~~~~----------~g------~~~~~~~~~~~~a~~-----~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 243 (389)
T 3vfd_A 185 TSKY----------VG------EGEKLVRALFAVARE-----LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFD 243 (389)
T ss_dssp -----------------------CHHHHHHHHHHHHH-----SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHH
T ss_pred hccc----------cc------hHHHHHHHHHHHHHh-----cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhh
Confidence 6421 01 111223333433321 256899999999996432 233444444
Q ss_pred CC-CCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhc
Q 003175 603 WP-TKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISG 680 (842)
Q Consensus 603 ~~-~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~G 680 (842)
.. .....+++||+++|. ++.+++.+.+||. ..|.|++|+.+++.+||..++...+ .++++.++.+++.+.++.|
T Consensus 244 ~~~~~~~~~v~vI~atn~---~~~l~~~l~~R~~-~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~ 319 (389)
T 3vfd_A 244 GVQSAGDDRVLVMGATNR---PQELDEAVLRRFI-KRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSG 319 (389)
T ss_dssp HHC-----CEEEEEEESC---GGGCCHHHHTTCC-EEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCH
T ss_pred cccccCCCCEEEEEecCC---chhcCHHHHcCcc-eEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCH
Confidence 22 223568999999997 5688899999998 5799999999999999999987654 5788888887776543333
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhC
Q 003175 681 DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 681 d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
+.+..+|+.|+..+.++...... ..........|+.+||..++..+..+
T Consensus 320 --~~l~~L~~~a~~~~~rel~~~~~-~~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 320 --SDLTALAKDAALGPIRELKPEQV-KNMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp --HHHHHHHHHHTTHHHHTSCCC----CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred --HHHHHHHHHHHHHHHHhhhhhhh-hccchhhcCCcCHHHHHHHHHHcCCC
Confidence 12235677777777654221111 11111234679999999999876554
No 27
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.77 E-value=3.4e-17 Score=179.08 Aligned_cols=270 Identities=16% Similarity=0.212 Sum_probs=188.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++|++..++.|...+......+. ...+++|+||||+|||||++.++..++ ..+...++..+....++
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~-~~~~~ll~Gp~G~GKTTLa~~ia~~l~----------~~~~~~sg~~~~~~~~l 93 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGE-VLDHVLLAGPPGLGKTTLAHIIASELQ----------TNIHVTSGPVLVKQGDM 93 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTC-CCCCEEEESSTTSSHHHHHHHHHHHHT----------CCEEEEETTTCCSHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCC-CCCeEEEECCCCCcHHHHHHHHHHHhC----------CCEEEEechHhcCHHHH
Confidence 4467888888888888876533332 247799999999999999999999886 33556666554432211
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC-------------
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK------------- 606 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~------------- 606 (842)
. ..+... ....|++|||++.|....++.|+..++....
T Consensus 94 ~----------------------~~~~~~-------~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i 144 (334)
T 1in4_A 94 A----------------------AILTSL-------ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSI 144 (334)
T ss_dssp H----------------------HHHHHC-------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC-----------
T ss_pred H----------------------HHHHHc-------cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccc
Confidence 1 111111 1346999999999987557778777653211
Q ss_pred --CCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHH
Q 003175 607 --PNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDAR 683 (842)
Q Consensus 607 --~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R 683 (842)
.-.++.++++++. +..+.+.+++||. ..+.|.+|+.+++.+||+.++...+ .++++++.++++. ..|++|
T Consensus 145 ~~~l~~~~li~at~~---~~~Ls~~l~sR~~-l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~---~~G~~R 217 (334)
T 1in4_A 145 RIDIQPFTLVGATTR---SGLLSSPLRSRFG-IILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKR---SRGTPR 217 (334)
T ss_dssp ----CCCEEEEEESC---GGGSCHHHHTTCS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHT---STTCHH
T ss_pred cccCCCeEEEEecCC---cccCCHHHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHh---cCCChH
Confidence 0124778887776 4678899999997 4688999999999999999876544 5778888887664 589999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHHHHHcCCcc
Q 003175 684 RALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYELYKTGMGE 763 (842)
Q Consensus 684 ~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~~~~~g~~~ 763 (842)
.++++|+++...|..+ +...|+.+++.+|+..+..+. .+++.+++.+|.+++..+ +.+.
T Consensus 218 ~a~~ll~~~~~~a~~~-------------~~~~It~~~v~~al~~~~~~~-----~~l~~~~~~~l~~~~~~~---~~~~ 276 (334)
T 1in4_A 218 IAIRLTKRVRDMLTVV-------------KADRINTDIVLKTMEVLNIDD-----EGLDEFDRKILKTIIEIY---RGGP 276 (334)
T ss_dssp HHHHHHHHHHHHHHHH-------------TCSSBCHHHHHHHHHHHTCCT-----TCCCHHHHHHHHHHHHHS---TTCC
T ss_pred HHHHHHHHHHHHHHHc-------------CCCCcCHHHHHHHHHHhCCCc-----CCCCHHHHHHHHHHHHHh---CCCc
Confidence 9999999999988765 246799999999998764332 467788888888877543 2233
Q ss_pred eeHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhcccceEEec
Q 003175 764 TNFEKLAMTVSSLCTSNGEIFPSWDALLRVGCKLGECRIILCE 806 (842)
Q Consensus 764 ~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~~li~~~ 806 (842)
+. |..+|...++.+.+.+.+.+. .|..+|+|...
T Consensus 277 ~~-------~~~l~~~~~~~~~t~~~~~~~--~l~~~g~i~~~ 310 (334)
T 1in4_A 277 VG-------LNALAASLGVEADTLSEVYEP--YLLQAGFLART 310 (334)
T ss_dssp BC-------HHHHHHHHTSCHHHHHHHTHH--HHHHTTSEEEE
T ss_pred ch-------HHHHHHHhCCCcchHHHHHHH--HHHHcCCeecc
Confidence 43 335555566543333444443 57788888764
No 28
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.76 E-value=1.6e-17 Score=174.82 Aligned_cols=219 Identities=20% Similarity=0.311 Sum_probs=153.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcC------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 460 KFLPCRNKEMEDITAFIKGATCD------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
+.+.|.+..++.|...+...... +...+.+++|+||||||||++++++++.+. .++++++|..+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~----------~~~~~i~~~~~ 81 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK----------VPFFTISGSDF 81 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT----------CCEEEECSCSS
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC----------CCEEEEeHHHH
Confidence 44677777777777665542210 112367899999999999999999998874 45899998876
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh-----------HH---HHH
Q 003175 534 ASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ-----------SV---LYN 599 (842)
Q Consensus 534 ~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~-----------~~---L~~ 599 (842)
.+. +.|. +. ..+...|..+.. ..+.+|||||+|.+....+ .. |+.
T Consensus 82 ~~~----------~~~~--~~----~~~~~~~~~a~~-----~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~ 140 (257)
T 1lv7_A 82 VEM----------FVGV--GA----SRVRDMFEQAKK-----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLV 140 (257)
T ss_dssp TTS----------CCCC--CH----HHHHHHHHHHHT-----TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHH
T ss_pred HHH----------hhhh--hH----HHHHHHHHHHHH-----cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHH
Confidence 542 1111 11 123334443321 2578999999999876432 22 333
Q ss_pred hhcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHH
Q 003175 600 ILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAA 677 (842)
Q Consensus 600 ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~ 677 (842)
.++.. ....+++||+++|.+ +.+++.+.+ ||. ..+.|++|+.+++.+|++.++...+..++..+.+++. .
T Consensus 141 ~l~~~-~~~~~~~vI~~tn~~---~~l~~~l~r~~rf~-~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~---~ 212 (257)
T 1lv7_A 141 EMDGF-EGNEGIIVIAATNRP---DVLDPALLRPGRFD-RQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIAR---G 212 (257)
T ss_dssp HHHTC-CSSSCEEEEEEESCT---TTSCGGGGSTTSSC-EEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHH---T
T ss_pred HhhCc-ccCCCEEEEEeeCCc---hhCCHHHcCCCcCC-eEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHH---H
Confidence 44433 235679999999985 567777776 888 5899999999999999999988765444444555544 3
Q ss_pred Hhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHh
Q 003175 678 ISG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMF 730 (842)
Q Consensus 678 ~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~ 730 (842)
..| +.|.+.++|++|+..|..+ +...|+.+||.+|+..+.
T Consensus 213 ~~G~~~~dl~~l~~~a~~~a~~~-------------~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 213 TPGFSGADLANLVNEAALFAARG-------------NKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHT-------------TCSSBCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHh-------------CCCcccHHHHHHHHHHHh
Confidence 578 8888889999999988765 246899999999998764
No 29
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.76 E-value=2.7e-18 Score=195.99 Aligned_cols=235 Identities=21% Similarity=0.287 Sum_probs=164.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcC-------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 460 KFLPCRNKEMEDITAFIKGATCD-------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~-------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
+.+.|.+.++++|...+...+.. +...+.++||+||||||||++++++++++. ..|+++||..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~----------~~fv~vn~~~ 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----------AFFFLINGPE 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS----------SEEEEEEHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC----------CCEEEEEchH
Confidence 45889999999999988765332 112468899999999999999999988874 5799999876
Q ss_pred CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhh
Q 003175 533 LASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNIL 601 (842)
Q Consensus 533 ~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll 601 (842)
+.+. +. ......+...|..+.. ..+.||||||+|.|..+. +..|+.++
T Consensus 274 l~~~----------~~------g~~~~~~~~~f~~A~~-----~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~l 332 (489)
T 3hu3_A 274 IMSK----------LA------GESESNLRKAFEEAEK-----NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM 332 (489)
T ss_dssp HHTS----------CT------THHHHHHHHHHHHHHH-----TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHH
T ss_pred hhhh----------hc------chhHHHHHHHHHHHHh-----cCCcEEEecchhhhccccccccchHHHHHHHHHHHHh
Confidence 4431 11 1222334445554422 357999999999998753 24567777
Q ss_pred cCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHh
Q 003175 602 DWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAIS 679 (842)
Q Consensus 602 ~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~ 679 (842)
+.. .....++||++||.+ +.+++.+.+ ||. ..|.|++|+.+++.+||+.++.......+..++.+++.+.+++
T Consensus 333 d~~-~~~~~v~vIaaTn~~---~~Ld~al~r~gRf~-~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s 407 (489)
T 3hu3_A 333 DGL-KQRAHVIVMAATNRP---NSIDPALRRFGRFD-REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHV 407 (489)
T ss_dssp HHS-CTTSCEEEEEEESCG---GGBCGGGGSTTSSC-EEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCC
T ss_pred hcc-ccCCceEEEEecCCc---cccCHHHhCCCcCc-eEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCc
Confidence 643 246689999999984 668888888 787 6799999999999999999998766555545666666554443
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhhccCCCcC----CcCCCcccHHHHHHHHHHHhhC
Q 003175 680 GDARRALEICRRAAEIADYRIKKQTSNKNSA----SVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 680 Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~----~~~~~~It~~dv~~A~~~~~~~ 732 (842)
| +....+|+.|+..|..+........... ......|+++||..|+.++..+
T Consensus 408 ~--~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps 462 (489)
T 3hu3_A 408 G--ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (489)
T ss_dssp H--HHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred H--HHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCch
Confidence 3 4445688999988876643221110000 0122468999999999877654
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.76 E-value=1.3e-17 Score=190.20 Aligned_cols=132 Identities=16% Similarity=0.246 Sum_probs=105.7
Q ss_pred EEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEE---------eCCCCCccccchhhhccCCceeEEecCCCHHHH
Q 003175 579 CILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGI---------ANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQL 649 (842)
Q Consensus 579 ~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~---------tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~ 649 (842)
.|+||||+|.|....++.|+.+++.+ ..+++|+++ ++....+..+++.++|||.. +.|+||+.+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~---~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~--~~~~~~~~~e~ 371 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESS---IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI--IRTMLYTPQEM 371 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTST---TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEE--EECCCCCHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhcc---CCCEEEEecCCccccccccccccccccCChhHHhhcce--eeCCCCCHHHH
Confidence 59999999999887889999998854 334544454 32233467889999999964 89999999999
Q ss_pred HHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHH
Q 003175 650 QEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQE 728 (842)
Q Consensus 650 ~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~ 728 (842)
.+||+.++...+ .+++++++++++..+ .|++|.|+++|+.|..+|..+ +...|+.+||.+|+.-
T Consensus 372 ~~iL~~~~~~~~~~~~~~~~~~i~~~a~--~g~~r~a~~ll~~a~~~A~~~-------------~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 372 KQIIKIRAQTEGINISEEALNHLGEIGT--KTTLRYSVQLLTPANLLAKIN-------------GKDSIEKEHVEEISEL 436 (456)
T ss_dssp HHHHHHHHHHHTCCBCHHHHHHHHHHHH--HSCHHHHHHTHHHHHHHHHHT-------------TCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHhhc-------------CCCccCHHHHHHHHHH
Confidence 999999986443 689999998887542 599999999999999998765 3578999999999865
Q ss_pred Hh
Q 003175 729 MF 730 (842)
Q Consensus 729 ~~ 730 (842)
+.
T Consensus 437 ~~ 438 (456)
T 2c9o_A 437 FY 438 (456)
T ss_dssp SC
T ss_pred hc
Confidence 43
No 31
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.75 E-value=7.7e-17 Score=164.65 Aligned_cols=207 Identities=19% Similarity=0.231 Sum_probs=154.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
..++||+.+++.|..++.. +. ..+++|+||+|||||++++.+++.+...... ..++.+++........+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~----~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 85 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVER----KN--IPHLLFSGPPGTGKTATAIALARDLFGENWR-----DNFIEMNASDERGIDVV 85 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHT----TC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGG-----GGEEEEETTCTTCHHHH
T ss_pred HHHcCcHHHHHHHHHHHhC----CC--CCeEEEECCCCCCHHHHHHHHHHHHhccccc-----cceEEeccccccChHHH
Confidence 4588999999999888865 22 3459999999999999999999988644221 45889998765554332
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
...+ ....... . .....+.||||||+|.+....++.|..+++.. ...+.+|+++|.
T Consensus 86 ~~~~------------------~~~~~~~-~--~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~---~~~~~~i~~~~~ 141 (226)
T 2chg_A 86 RHKI------------------KEFARTA-P--IGGAPFKIIFLDEADALTADAQAALRRTMEMY---SKSCRFILSCNY 141 (226)
T ss_dssp HHHH------------------HHHHTSC-C--STTCSCEEEEEETGGGSCHHHHHHHHHHHHHT---TTTEEEEEEESC
T ss_pred HHHH------------------HHHhccc-C--CCccCceEEEEeChhhcCHHHHHHHHHHHHhc---CCCCeEEEEeCC
Confidence 2222 1111110 0 11246799999999999877778888888753 446777878886
Q ss_pred CCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 003175 620 MDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADY 698 (842)
Q Consensus 620 ~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~ 698 (842)
...+++.+.+|+. .+.|+|++.+++.+++..++...+ .+++++++.+++. ..||+|.++++++.++..+
T Consensus 142 ---~~~~~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~---~~g~~r~l~~~l~~~~~~~-- 211 (226)
T 2chg_A 142 ---VSRIIEPIQSRCA--VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYI---SGGDFRKAINALQGAAAIG-- 211 (226)
T ss_dssp ---GGGSCHHHHTTSE--EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHH---HTTCHHHHHHHHHHHHHTC--
T ss_pred ---hhhcCHHHHHhCc--eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHhcC--
Confidence 4677889999995 699999999999999999886443 5788888877654 5899999999988877532
Q ss_pred HHhhhccCCCcCCcCCCcccHHHHHHHHH
Q 003175 699 RIKKQTSNKNSASVGKSLVGMADVEAAIQ 727 (842)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~It~~dv~~A~~ 727 (842)
..|+.+||.+++.
T Consensus 212 ----------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ----------------EVVDADTIYQITA 224 (226)
T ss_dssp ----------------SCBCHHHHHHHHH
T ss_pred ----------------ceecHHHHHHHhc
Confidence 4799999998875
No 32
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.75 E-value=1.7e-17 Score=178.59 Aligned_cols=235 Identities=15% Similarity=0.230 Sum_probs=155.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcC------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 460 KFLPCRNKEMEDITAFIKGATCD------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
+.+.|.+..++.|...+...... ....+.+++|+||||||||++++++++.+. ..+++++|..+
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~----------~~~~~i~~~~l 90 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS----------ATFLNISAASL 90 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT----------CEEEEEESTTT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC----------CCeEEeeHHHH
Confidence 45788999999988887653321 111368999999999999999999999875 56999999876
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh-----------HHHHHhhc
Q 003175 534 ASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ-----------SVLYNILD 602 (842)
Q Consensus 534 ~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~-----------~~L~~ll~ 602 (842)
.... .| ... ..+...|..+.. ..+.||||||+|.+....+ +.|+..++
T Consensus 91 ~~~~----------~~---~~~---~~~~~~~~~~~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 149 (297)
T 3b9p_A 91 TSKY----------VG---DGE---KLVRALFAVARH-----MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFD 149 (297)
T ss_dssp SSSS----------CS---CHH---HHHHHHHHHHHH-----TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHH
T ss_pred hhcc----------cc---hHH---HHHHHHHHHHHH-----cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHh
Confidence 5320 01 111 122222222211 2678999999999976432 23445554
Q ss_pred CCCC--CCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHh
Q 003175 603 WPTK--PNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAIS 679 (842)
Q Consensus 603 ~~~~--~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~ 679 (842)
.... ...+++||++||. ++.+++.+.+||. ..+.|++++.+++..|+..++...+ .++++.++.+++...+++
T Consensus 150 ~~~~~~~~~~v~vi~~tn~---~~~l~~~l~~R~~-~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~ 225 (297)
T 3b9p_A 150 GLPGNPDGDRIVVLAATNR---PQELDEAALRRFT-KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYS 225 (297)
T ss_dssp HCC------CEEEEEEESC---GGGBCHHHHHHCC-EEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCC
T ss_pred cccccCCCCcEEEEeecCC---hhhCCHHHHhhCC-eEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCC
Confidence 3321 2357999999998 4678899999998 6899999999999999999987655 578888888887754433
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhC
Q 003175 680 GDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 680 Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
| +....+|+.|+..+.++....... .........|+.+||..|+..+..+
T Consensus 226 ~--~~l~~l~~~a~~~a~r~~~~~~~~-~~~~~~~~~i~~~d~~~a~~~~~~s 275 (297)
T 3b9p_A 226 G--SDLTALAKDAALEPIRELNVEQVK-CLDISAMRAITEQDFHSSLKRIRRS 275 (297)
T ss_dssp H--HHHHHHHHHHTTHHHHTCC---------CCCCCCCCHHHHHHHTTSCCCS
T ss_pred H--HHHHHHHHHHHHHHHHHHhhhhcc-cccccccCCcCHHHHHHHHHHcCCC
Confidence 3 122367888888776542111000 0111123579999999998766543
No 33
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.75 E-value=1.3e-17 Score=180.20 Aligned_cols=238 Identities=16% Similarity=0.231 Sum_probs=161.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCC--------cccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDD--------QCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~--------~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
..++|++..++.|...+....... ...+.+++|+||||||||++++++++.+. ..+++++|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~----------~~~~~i~~~ 84 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN----------APFIKVEAT 84 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT----------CCEEEEEGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC----------CCEEEEcch
Confidence 457899999999998887632210 01367899999999999999999999885 458999998
Q ss_pred cCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC------------hHHHHH
Q 003175 532 KLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN------------QSVLYN 599 (842)
Q Consensus 532 ~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~------------~~~L~~ 599 (842)
.+.+.. +.|... ...+.+.+............+.||||||+|.+.... ++.|+.
T Consensus 85 ~~~~~~---------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~ 150 (310)
T 1ofh_A 85 KFTEVG---------YVGKEV-----DSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLP 150 (310)
T ss_dssp GGSSCC---------SGGGST-----THHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHH
T ss_pred hcccCC---------ccCccH-----HHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHH
Confidence 876420 000000 011112221110000000135799999999998776 788888
Q ss_pred hhcCCC-------CCCCcEEEEEEeCC-CCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHh-------------c
Q 003175 600 ILDWPT-------KPNSKLIVIGIANT-MDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRL-------------K 658 (842)
Q Consensus 600 ll~~~~-------~~~~~vivI~~tn~-~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l-------------~ 658 (842)
+++... .....++||+++|. ...+..+++++.+||. ..|.|++|+.+++.+|+..++ .
T Consensus 151 ~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~ 229 (310)
T 1ofh_A 151 LVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLP-IRVELTALSAADFERILTEPHASLTEQYKALMATE 229 (310)
T ss_dssp HHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCC-EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHT
T ss_pred HhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCC-ceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 887431 12346888888653 2345678899999998 679999999999999999532 1
Q ss_pred Ccc-cCcHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHH
Q 003175 659 GIE-AFEKQAIEFASRKVAAI-----SGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEM 729 (842)
Q Consensus 659 ~~~-~~~~~~l~~ia~~~~~~-----~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~ 729 (842)
+.. .+++++++++++..... .||+|.+.++|++++..+..+... .......|+.+||.+++...
T Consensus 230 ~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~-------~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 230 GVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD-------MNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp TCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGG-------CTTCEEEECHHHHHHHTCSS
T ss_pred CCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCcc-------ccCCEEEEeeHHHHHHHHhh
Confidence 111 58999999998876543 699999999999988765543210 00112359999999988754
No 34
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.74 E-value=3e-17 Score=185.73 Aligned_cols=220 Identities=20% Similarity=0.319 Sum_probs=152.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhc------CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 460 KFLPCRNKEMEDITAFIKGATC------DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~------~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
+.+.|.++.+++|...+..... -+...+.+++|+||||||||+++++++.++. .+|++++|..+
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~----------~~f~~is~~~~ 85 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN----------VPFFHISGSDF 85 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT----------CCEEEEEGGGT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC----------CCeeeCCHHHH
Confidence 3466777777777766554221 1122467899999999999999999999875 56999999886
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh-----------HHHHHh--
Q 003175 534 ASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ-----------SVLYNI-- 600 (842)
Q Consensus 534 ~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~-----------~~L~~l-- 600 (842)
.... .| .....+...|..+.. ..|+||||||+|.|....+ ..+..+
T Consensus 86 ~~~~----------~g------~~~~~~r~lf~~A~~-----~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~ 144 (476)
T 2ce7_A 86 VELF----------VG------VGAARVRDLFAQAKA-----HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLV 144 (476)
T ss_dssp TTCC----------TT------HHHHHHHHHHHHHHH-----TCSEEEEEETGGGTCCC---------CHHHHHHHHHHH
T ss_pred HHHH----------hc------ccHHHHHHHHHHHHh-----cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHH
Confidence 6420 11 112233444544322 3689999999999976432 233333
Q ss_pred -hcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHH
Q 003175 601 -LDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAA 677 (842)
Q Consensus 601 -l~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~ 677 (842)
++.. .....++||++||.+ +.+++.+.+ ||. +.|.|++|+.+++.+|++.+++..+..++..++.+++..
T Consensus 145 ~ld~~-~~~~~viVIaaTn~~---~~Ld~allR~gRFd-~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t-- 217 (476)
T 2ce7_A 145 EMDGF-DSKEGIIVMAATNRP---DILDPALLRPGRFD-KKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRT-- 217 (476)
T ss_dssp HHHHS-CGGGTEEEEEEESCG---GGSCGGGGSTTSSC-EEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTC--
T ss_pred HHhcc-CCCCCEEEEEecCCh---hhhchhhcccCcce-eEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhc--
Confidence 3322 234679999999984 567777765 898 689999999999999999998876544444466666554
Q ss_pred HhcCH-HHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 678 ISGDA-RRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 678 ~~Gd~-R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
.|.. +.+.++|.+|+..|..+ +...|+.+||..|+..+..
T Consensus 218 -~G~sgadL~~lv~~Aal~A~~~-------------~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 218 -PGFVGADLENLVNEAALLAARE-------------GRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp -TTCCHHHHHHHHHHHHHHHHHT-------------TCSSBCHHHHHHHHHHHC-
T ss_pred -CCCcHHHHHHHHHHHHHHHHHc-------------CCCeecHHHHHHHHHHHhc
Confidence 5544 56668999999888754 2467999999999988754
No 35
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=5.6e-17 Score=178.74 Aligned_cols=225 Identities=16% Similarity=0.122 Sum_probs=155.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
..++|+++.++.|..++. .+. ..+++|+||||||||++++++++.+...... ...++++++........+
T Consensus 37 ~~i~g~~~~~~~l~~~l~----~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~----~~~~~~~~~~~~~~~~~~ 106 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLK----SAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLM----KSRILELNASDERGISIV 106 (353)
T ss_dssp TTCCSCCTTHHHHHHHTT----CTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHH----TTSEEEECSSSCCCHHHH
T ss_pred HHhhCCHHHHHHHHHHHh----cCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCccc----ccceEEEccccccchHHH
Confidence 568899998887766654 332 2459999999999999999999998743111 145889998775443222
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
...+............. ... .. .....+.||||||+|.+....++.|+.+++.. .....||.++|.
T Consensus 107 ~~~~~~~~~~~~~~~~~---~~~-~~-------~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~---~~~~~~il~~~~ 172 (353)
T 1sxj_D 107 REKVKNFARLTVSKPSK---HDL-EN-------YPCPPYKIIILDEADSMTADAQSALRRTMETY---SGVTRFCLICNY 172 (353)
T ss_dssp TTHHHHHHHSCCCCCCT---THH-HH-------SCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT---TTTEEEEEEESC
T ss_pred HHHHHHHhhhcccccch---hhc-cc-------CCCCCceEEEEECCCccCHHHHHHHHHHHHhc---CCCceEEEEeCc
Confidence 22211111000000000 000 00 01135689999999999887788899998754 234556667776
Q ss_pred CCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 003175 620 MDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADY 698 (842)
Q Consensus 620 ~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~ 698 (842)
+..+.+.+.+|+. .+.|+|++.+++.++|..++...+ .+++++++++++.+ .||+|.++++++.+...+..
T Consensus 173 ---~~~l~~~l~sR~~--~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~---~G~~r~~~~~l~~~~~~~~~ 244 (353)
T 1sxj_D 173 ---VTRIIDPLASQCS--KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDIS---AGDLRRGITLLQSASKGAQY 244 (353)
T ss_dssp ---GGGSCHHHHHHSE--EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHT---SSCHHHHHHHHHHTHHHHHH
T ss_pred ---hhhCcchhhccCc--eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCC
Confidence 4678899999995 699999999999999999987554 58899998887764 69999999999998877643
Q ss_pred HHhhhccCCCcCCcCCCcccHHHHHHHHHH
Q 003175 699 RIKKQTSNKNSASVGKSLVGMADVEAAIQE 728 (842)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~It~~dv~~A~~~ 728 (842)
.. ....|+.++|.+++..
T Consensus 245 ~~------------~~~~It~~~v~~~~~~ 262 (353)
T 1sxj_D 245 LG------------DGKNITSTQVEELAGV 262 (353)
T ss_dssp HC------------SCCCCCHHHHHHHHTC
T ss_pred Cc------------cCccccHHHHHHHhCC
Confidence 21 0126999999987763
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.74 E-value=2.7e-17 Score=179.13 Aligned_cols=231 Identities=16% Similarity=0.223 Sum_probs=170.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++|++..++.+...+......+. ...+++|+||||||||++++++++.+. ..+++++|..+.....+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~-~~~~vll~G~~GtGKT~la~~i~~~~~----------~~~~~~~~~~~~~~~~l 80 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKE-PLEHLLLFGPPGLGKTTLAHVIAHELG----------VNLRVTSGPAIEKPGDL 80 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCS-CCCCCEEECCTTCCCHHHHHHHHHHHT----------CCEEEECTTTCCSHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCC-CCCcEEEECCCCCCHHHHHHHHHHHhC----------CCEEEEeccccCChHHH
Confidence 5689999999999999887654322 257899999999999999999999875 45889999877654322
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC-------------
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK------------- 606 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~------------- 606 (842)
+. .|... ...+.+|||||+|.+....+..|+.+++....
T Consensus 81 ~~----------------------~l~~~------~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~ 132 (324)
T 1hqc_A 81 AA----------------------ILANS------LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTI 132 (324)
T ss_dssp HH----------------------HHTTT------CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCE
T ss_pred HH----------------------HHHHh------ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhcccccccccc
Confidence 21 22210 12557999999999987778888888864310
Q ss_pred --CCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHH
Q 003175 607 --PNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDAR 683 (842)
Q Consensus 607 --~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R 683 (842)
...++++|+++|.. ..+.+.+.+||. ..+.|++++.+++.+++...+...+ .+++++++.++.. ..|++|
T Consensus 133 ~~~~~~~~~i~~t~~~---~~~~~~l~~R~~-~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~---~~G~~r 205 (324)
T 1hqc_A 133 RLELPRFTLIGATTRP---GLITAPLLSRFG-IVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRR---SRGTMR 205 (324)
T ss_dssp EEECCCCEEEEEESCC---SSCSCSTTTTCS-CEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHH---SCSCHH
T ss_pred ccCCCCEEEEEeCCCc---ccCCHHHHhccc-EEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---ccCCHH
Confidence 11357899999974 566778899996 5799999999999999999987554 6788888887665 479999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHH
Q 003175 684 RALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVY 754 (842)
Q Consensus 684 ~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~ 754 (842)
.+.++++.+...+... +...|+.+++..++...... ...+...++.++.+++.
T Consensus 206 ~l~~~l~~~~~~a~~~-------------~~~~i~~~~~~~~~~~~~~~-----~~~l~~~e~~~i~~~~~ 258 (324)
T 1hqc_A 206 VAKRLFRRVRDFAQVA-------------GEEVITRERALEALAALGLD-----ELGLEKRDREILEVLIL 258 (324)
T ss_dssp HHHHHHHHHTTTSTTT-------------SCSCCCHHHHHHHHHHHTCC-----TTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------------cCCCCCHHHHHHHHHHhccc-----ccCCCHHHHHHHHHHHH
Confidence 9988888887655322 24579999999888764322 13466677777766654
No 37
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=1.7e-16 Score=172.41 Aligned_cols=275 Identities=15% Similarity=0.169 Sum_probs=179.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++|++..++.|...+.. +. ..+++|+||+|+|||++++.+++.+...... ..++++++....+...+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~----~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~~i 89 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKD----GN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYA-----DGVLELNASDDRGIDVV 89 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHS----CC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHH-----HHEEEECTTSCCSHHHH
T ss_pred HHHHCCHHHHHHHHHHHHc----CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCccc-----CCEEEecCccccChHHH
Confidence 4588999999988887754 32 2349999999999999999999998643211 45889998764432222
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
. ..+.........+ ..+.+.||||||+|.+....++.|..+++.+ ...+.||+++|.
T Consensus 90 ~------------------~~~~~~~~~~~~~--~~~~~~viiiDe~~~l~~~~~~~L~~~le~~---~~~~~~il~~~~ 146 (323)
T 1sxj_B 90 R------------------NQIKHFAQKKLHL--PPGKHKIVILDEADSMTAGAQQALRRTMELY---SNSTRFAFACNQ 146 (323)
T ss_dssp H------------------THHHHHHHBCCCC--CTTCCEEEEEESGGGSCHHHHHTTHHHHHHT---TTTEEEEEEESC
T ss_pred H------------------HHHHHHHhccccC--CCCCceEEEEECcccCCHHHHHHHHHHHhcc---CCCceEEEEeCC
Confidence 1 1122221111111 0234789999999999877677788888743 456777778876
Q ss_pred CCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 003175 620 MDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADY 698 (842)
Q Consensus 620 ~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~ 698 (842)
...+.+.+.+|+. .+.|++++.+++.++|..++...+ .+++++++.+++. ..||+|.++++++.+...
T Consensus 147 ---~~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~---~~G~~r~a~~~l~~~~~~--- 215 (323)
T 1sxj_B 147 ---SNKIIEPLQSQCA--ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFT---AEGDMRQAINNLQSTVAG--- 215 (323)
T ss_dssp ---GGGSCHHHHTTSE--EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHH---HTTCHHHHHHHHHHHHHH---
T ss_pred ---hhhchhHHHhhce--EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHhc---
Confidence 4678899999985 699999999999999999886544 5788888887665 489999999999877631
Q ss_pred HHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHHHHHhhCchHHHHHHHHHHHHHHHcCCcceeHHHHHHHHHHHHh
Q 003175 699 RIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVYELYKTGMGETNFEKLAMTVSSLCT 778 (842)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~~~l~~ls~~~kliL~a~~~~~~~~g~~~~~~~~v~~~y~~~~~ 778 (842)
...|+.++|.+++.........+.+.. ..... ++..+...+...| ....++...|...+.
T Consensus 216 ---------------~~~i~~~~v~~~~~~~~~~~i~~~~~~-~~~~~-~l~~l~~dl~~~g---~~~~~i~~~l~~~~~ 275 (323)
T 1sxj_B 216 ---------------HGLVNADNVFKIVDSPHPLIVKKMLLA-SNLED-SIQILRTDLWKKG---YSSIDIVTTSFRVTK 275 (323)
T ss_dssp ---------------HSSBCHHHHHHHHTSCCHHHHHHHHSC-SSHHH-HHHHHHHTTTTTT---CCHHHHHHHHHHHHH
T ss_pred ---------------CCCcCHHHHHHHHCCCCHHHHHHHHhc-CCHHH-HHHHHHHHHHHcC---CCHHHHHHHHHHHHH
Confidence 135888999887764333233444444 22111 2211211011223 456677777777665
Q ss_pred hcCCCCCCHHHHHHHHHHhcccc
Q 003175 779 SNGEIFPSWDALLRVGCKLGECR 801 (842)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~L~~~~ 801 (842)
... ..+...+.+++..|.+..
T Consensus 276 ~l~--~~~~~~l~~~l~~l~~~~ 296 (323)
T 1sxj_B 276 NLA--QVKESVRLEMIKEIGLTH 296 (323)
T ss_dssp TCT--TSCHHHHHHHHHHHHHHH
T ss_pred hcc--cCCHHHHHHHHHHHHHHH
Confidence 532 123455555555555443
No 38
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.73 E-value=1.8e-17 Score=179.37 Aligned_cols=209 Identities=20% Similarity=0.174 Sum_probs=150.9
Q ss_pred CCCCcHHHHHHHHHHHHHhhc---------CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 461 FLPCRNKEMEDITAFIKGATC---------DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~---------~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
.++|.+..++.|..++..... .....+.++||+||||||||++++++++.+.... ......++++++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~---~~~~~~~~~~~~~ 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG---YVRKGHLVSVTRD 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT---SSSSCCEEEECGG
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CcCCCcEEEEcHH
Confidence 378999999999988765431 0012367899999999999999999999997542 2223468999987
Q ss_pred cCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC---------hHHHHHhhc
Q 003175 532 KLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN---------QSVLYNILD 602 (842)
Q Consensus 532 ~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~---------~~~L~~ll~ 602 (842)
.+... +.|. ....+...|... .+.||||||+|.|.... ++.|+++++
T Consensus 109 ~l~~~----------~~g~------~~~~~~~~~~~~--------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~ 164 (309)
T 3syl_A 109 DLVGQ----------YIGH------TAPKTKEVLKRA--------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME 164 (309)
T ss_dssp GTCCS----------STTC------HHHHHHHHHHHH--------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHH
T ss_pred Hhhhh----------cccc------cHHHHHHHHHhc--------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHh
Confidence 76532 1111 112233444333 34699999999996332 356666666
Q ss_pred CCCCCCCcEEEEEEeCCC--CCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHH---
Q 003175 603 WPTKPNSKLIVIGIANTM--DLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVA--- 676 (842)
Q Consensus 603 ~~~~~~~~vivI~~tn~~--dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~--- 676 (842)
. ...+++||+++|.. +....+++.+.+||. ..|.|++|+.+++.+|+..++...+ .+++++++.+++.+.
T Consensus 165 ~---~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~ 240 (309)
T 3syl_A 165 N---NRDDLVVILAGYADRMENFFQSNPGFRSRIA-HHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRR 240 (309)
T ss_dssp H---CTTTCEEEEEECHHHHHHHHHHSTTHHHHEE-EEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHT
T ss_pred c---CCCCEEEEEeCChHHHHHHHhhCHHHHHhCC-eEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 3 35678888888753 222245689999997 6899999999999999999997654 688999998888765
Q ss_pred --HHhcCHHHHHHHHHHHHHHHHHHH
Q 003175 677 --AISGDARRALEICRRAAEIADYRI 700 (842)
Q Consensus 677 --~~~Gd~R~al~ll~~A~~~A~~~~ 700 (842)
...||+|.+.++|++|+..+..+.
T Consensus 241 ~~~~~gn~r~l~~~l~~a~~~~~~r~ 266 (309)
T 3syl_A 241 NQPHFANARSIRNALDRARLRQANRL 266 (309)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999998766553
No 39
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.72 E-value=2.4e-16 Score=178.24 Aligned_cols=208 Identities=16% Similarity=0.224 Sum_probs=148.8
Q ss_pred CCCCCcHHHH---HHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCCh
Q 003175 460 KFLPCRNKEM---EDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASP 536 (842)
Q Consensus 460 ~~L~gRe~e~---~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~ 536 (842)
+.++|++..+ ..|...+.. +. ..+++|+||||||||++++.+++.+. ..++.+++.... .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~----~~--~~~vLL~GppGtGKTtlAr~ia~~~~----------~~f~~l~a~~~~-~ 88 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEA----GH--LHSMILWGPPGTGKTTLAEVIARYAN----------ADVERISAVTSG-V 88 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHH----TC--CCEEEEECSTTSSHHHHHHHHHHHTT----------CEEEEEETTTCC-H
T ss_pred HHhCCcHHHHhchHHHHHHHHc----CC--CcEEEEECCCCCcHHHHHHHHHHHhC----------CCeEEEEeccCC-H
Confidence 5688999888 666666654 32 37899999999999999999999875 568899876532 2
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEE
Q 003175 537 ENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGI 616 (842)
Q Consensus 537 ~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~ 616 (842)
..+...+. ....... ...+.||||||+|.|....|+.|+.+++. ..++||++
T Consensus 89 ~~ir~~~~---------------~a~~~~~--------~~~~~iLfIDEI~~l~~~~q~~LL~~le~-----~~v~lI~a 140 (447)
T 3pvs_A 89 KEIREAIE---------------RARQNRN--------AGRRTILFVDEVHRFNKSQQDAFLPHIED-----GTITFIGA 140 (447)
T ss_dssp HHHHHHHH---------------HHHHHHH--------TTCCEEEEEETTTCC------CCHHHHHT-----TSCEEEEE
T ss_pred HHHHHHHH---------------HHHHhhh--------cCCCcEEEEeChhhhCHHHHHHHHHHHhc-----CceEEEec
Confidence 22211111 1111111 12568999999999998888889998873 45788887
Q ss_pred eCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcC-------c-ccCcHHHHHHHHHHHHHHhcCHHHHHHH
Q 003175 617 ANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKG-------I-EAFEKQAIEFASRKVAAISGDARRALEI 688 (842)
Q Consensus 617 tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~-------~-~~~~~~~l~~ia~~~~~~~Gd~R~al~l 688 (842)
|+. +....+.+.+.||+. .+.|++++.+++..||..++.. . ..+++++++++++. ..||+|.++++
T Consensus 141 tt~-n~~~~l~~aL~sR~~--v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~---~~Gd~R~lln~ 214 (447)
T 3pvs_A 141 TTE-NPSFELNSALLSRAR--VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL---VNGDARRALNT 214 (447)
T ss_dssp ESS-CGGGSSCHHHHTTEE--EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH---HCSCHHHHHHH
T ss_pred CCC-CcccccCHHHhCcee--EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH---CCCCHHHHHHH
Confidence 753 234577899999995 6899999999999999999875 2 25889999998876 58999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHH
Q 003175 689 CRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEM 729 (842)
Q Consensus 689 l~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~ 729 (842)
|+.++..+... ..+...|+.++|.+++...
T Consensus 215 Le~a~~~a~~~-----------~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 215 LEMMADMAEVD-----------DSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHSCBC-----------TTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHhcccc-----------cCCCCccCHHHHHHHHhhh
Confidence 99998765311 0123579999999888753
No 40
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=2.1e-16 Score=172.04 Aligned_cols=192 Identities=23% Similarity=0.274 Sum_probs=140.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++|++..++.|..++.. +. ..+++|+||||||||++++.+++.+...... ..++++++........+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~----~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~~~ 93 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKT----GS--MPHLLFAGPPGVGKTTAALALARELFGENWR-----HNFLELNASDERGINVI 93 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHH----TC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHH-----HHEEEEETTCHHHHHTT
T ss_pred HHhhCCHHHHHHHHHHHHc----CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCccc-----CceEEeeccccCchHHH
Confidence 5689999999999888765 22 3459999999999999999999998643211 45888887642211111
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
. ..+.... ....+ ..+.+.||||||+|.+....++.|+.+++.+ ...+.||+++|.
T Consensus 94 ~------------------~~~~~~~-~~~~~--~~~~~~vliiDe~~~l~~~~~~~L~~~le~~---~~~~~~i~~~~~ 149 (327)
T 1iqp_A 94 R------------------EKVKEFA-RTKPI--GGASFKIIFLDEADALTQDAQQALRRTMEMF---SSNVRFILSCNY 149 (327)
T ss_dssp H------------------HHHHHHH-HSCCG--GGCSCEEEEEETGGGSCHHHHHHHHHHHHHT---TTTEEEEEEESC
T ss_pred H------------------HHHHHHH-hhCCc--CCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc---CCCCeEEEEeCC
Confidence 1 1111111 11111 1135789999999999877788899988853 345777778876
Q ss_pred CCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003175 620 MDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAE 694 (842)
Q Consensus 620 ~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~ 694 (842)
+..+.+.+.+|+. .+.|+|++.+++.+++..++...+ .+++++++.+++. ..||+|.++++++.+..
T Consensus 150 ---~~~l~~~l~sr~~--~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~---~~g~~r~~~~~l~~~~~ 217 (327)
T 1iqp_A 150 ---SSKIIEPIQSRCA--IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYI---AEGDMRRAINILQAAAA 217 (327)
T ss_dssp ---GGGSCHHHHHTEE--EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHH---HTTCHHHHHHHHHHHHT
T ss_pred ---ccccCHHHHhhCc--EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---CCCCHHHHHHHHHHHHh
Confidence 4678899999985 699999999999999999987654 5888888887765 48999999999887653
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.71 E-value=1.4e-16 Score=173.73 Aligned_cols=242 Identities=14% Similarity=0.146 Sum_probs=155.5
Q ss_pred hccccCCCCCCC-CcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEec
Q 003175 452 TLLLATLPKFLP-CRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNG 530 (842)
Q Consensus 452 ~L~~~~~p~~L~-gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~ 530 (842)
.|.+.+.++.++ |..... .+ ..+...+......+++++|+||||||||++++++++.+... ...++++++
T Consensus 3 ~l~~~~~f~~fv~g~~~~~-a~-~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-------~~~~~~i~~ 73 (324)
T 1l8q_A 3 FLNPKYTLENFIVGEGNRL-AY-EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-------GYRVIYSSA 73 (324)
T ss_dssp CCCTTCCSSSCCCCTTTHH-HH-HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-------TCCEEEEEH
T ss_pred CCCCCCCcccCCCCCcHHH-HH-HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEH
Confidence 355566666665 433322 11 22333333332236789999999999999999999998653 156899998
Q ss_pred ccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc--CChHHHHHhhcCCCCCC
Q 003175 531 LKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT--RNQSVLYNILDWPTKPN 608 (842)
Q Consensus 531 ~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~--~~~~~L~~ll~~~~~~~ 608 (842)
..+ ...+...+... ....+...+. .+.||||||+|.+.. ..++.|+.+++.... .
T Consensus 74 ~~~------~~~~~~~~~~~------~~~~~~~~~~----------~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~ 130 (324)
T 1l8q_A 74 DDF------AQAMVEHLKKG------TINEFRNMYK----------SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-L 130 (324)
T ss_dssp HHH------HHHHHHHHHHT------CHHHHHHHHH----------TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-T
T ss_pred HHH------HHHHHHHHHcC------cHHHHHHHhc----------CCCEEEEcCcccccCChHHHHHHHHHHHHHHH-C
Confidence 654 22222222110 0111122221 357999999999986 346777777764322 2
Q ss_pred CcEEEEEEeCCCCCccccchhhhccCCc-eeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHH
Q 003175 609 SKLIVIGIANTMDLPEKLLPRISSRMGV-QRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRAL 686 (842)
Q Consensus 609 ~~vivI~~tn~~dl~~~l~~~l~sR~~~-~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al 686 (842)
...+||++++.+.....+++++.+||.. ..+.|+| +.+++.+|+..++...+ .+++++++++++.. ||+|.+.
T Consensus 131 ~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~----g~~r~l~ 205 (324)
T 1l8q_A 131 EKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT----KNVREIE 205 (324)
T ss_dssp TCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC----SSHHHHH
T ss_pred CCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC----CCHHHHH
Confidence 3455555555543334688999999953 4699999 99999999999987544 68899999887663 9999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcCCcCCCcc-cHHHHHHHHHHHhhChHHHHHhh
Q 003175 687 EICRRAAEIADYRIKKQTSNKNSASVGKSLV-GMADVEAAIQEMFQAPHIQVMKS 740 (842)
Q Consensus 687 ~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~I-t~~dv~~A~~~~~~~~~~~~l~~ 740 (842)
+++.++..... +.... .+...| +.++|.+++.+.+.-.. ..+.+
T Consensus 206 ~~l~~~~~~~~-~~l~~--------~~~~~i~t~~~i~~~~~~~~~~~~-~~i~s 250 (324)
T 1l8q_A 206 GKIKLIKLKGF-EGLER--------KERKERDKLMQIVEFVANYYAVKV-EDILS 250 (324)
T ss_dssp HHHHHHHHHCH-HHHHH--------HHHHHHHHHHHHHHHHHHHHSCCH-HHHSS
T ss_pred HHHHHHHHcCH-HHhcc--------ccccCCCCHHHHHHHHHHHhCCCH-HHHhc
Confidence 99988876610 00000 012458 99999999998876433 33444
No 42
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.71 E-value=3.9e-16 Score=173.32 Aligned_cols=213 Identities=18% Similarity=0.225 Sum_probs=148.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCC--------------CceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIR--------------PYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~--------------~~~~ 525 (842)
+.++||+.+++.|...+.. +. .++.++|+||+|||||++++.+++.+.........+ ...+
T Consensus 16 ~~~vg~~~~~~~L~~~l~~---~~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSL---GR--IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHH---TC--CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSC
T ss_pred hhccCcHHHHHHHHHHHHh---CC--CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCce
Confidence 4589999999999888865 22 256789999999999999999999886432100000 0123
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+.+++..... .......+ +.+... ...+.+.||||||+|.+....++.|+.+++.+
T Consensus 91 ~~~~~~~~~~------------------~~~~~~l~-~~~~~~----~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~- 146 (373)
T 1jr3_A 91 IEIDAASRTK------------------VEDTRDLL-DNVQYA----PARGRFKVYLIDEVHMLSRHSFNALLKTLEEP- 146 (373)
T ss_dssp EEEETTCSCC------------------SSCHHHHH-HHTTSC----CSSSSSEEEEEECGGGSCHHHHHHHHHHHHSC-
T ss_pred EEecccccCC------------------HHHHHHHH-HHHhhc----cccCCeEEEEEECcchhcHHHHHHHHHHHhcC-
Confidence 3333321110 01111111 122111 12346789999999999877788888888753
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
...++||++++. ...+.+.+.+|+ ..+.|++++.+++.++|..++...+ .+++++++.+++. ..||+|.
T Consensus 147 --~~~~~~Il~~~~---~~~l~~~l~sr~--~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~---~~G~~r~ 216 (373)
T 1jr3_A 147 --PEHVKFLLATTD---PQKLPVTILSRC--LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA---AEGSLRD 216 (373)
T ss_dssp --CSSEEEEEEESC---GGGSCHHHHTTS--EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHH---SSSCHHH
T ss_pred --CCceEEEEEeCC---hHhCcHHHHhhe--eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---CCCCHHH
Confidence 557888888876 457788999998 5799999999999999999887554 5788888887665 4899999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHH
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQE 728 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~ 728 (842)
+++++..+...+ ...|+.++|.+++..
T Consensus 217 ~~~~l~~~~~~~-----------------~~~i~~~~v~~~~~~ 243 (373)
T 1jr3_A 217 ALSLTDQAIASG-----------------DGQVSTQAVSAMLGT 243 (373)
T ss_dssp HHHHHHHHHHHT-----------------TTCBCHHHHHHHTTC
T ss_pred HHHHHHHHHHhc-----------------CCcccHHHHHHHhCC
Confidence 999998876432 245888888777643
No 43
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.70 E-value=3.5e-16 Score=169.63 Aligned_cols=207 Identities=19% Similarity=0.238 Sum_probs=147.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++|++..++.|..++.. +. ..+++|+||+|||||++++.+++.+..... ...++++|+........+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~----~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~~~~~~~~ 85 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVER----KN--IPHLLFSGPPGTGKTATAIALARDLFGENW-----RDNFIEMNASDERGIDVV 85 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTT----TC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCH-----HHHCEEEETTSTTCTTTS
T ss_pred HHHhCCHHHHHHHHHHHhC----CC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcc-----cCCeEEEeCccccChHHH
Confidence 4578999988877766543 32 334999999999999999999999853211 145888998764332111
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
.. .+.... ..... ..+.+.||||||+|.+....++.|..+++. ....+.||+++|.
T Consensus 86 ~~------------------~~~~~~-~~~~~--~~~~~~vliiDe~~~l~~~~~~~L~~~le~---~~~~~~~i~~~~~ 141 (319)
T 2chq_A 86 RH------------------KIKEFA-RTAPI--GGAPFKIIFLDEADALTADAQAALRRTMEM---YSKSCRFILSCNY 141 (319)
T ss_dssp SH------------------HHHHHH-HSCCS--SSCCCEEEEEETGGGSCHHHHHTTGGGTSS---SSSSEEEEEEESC
T ss_pred HH------------------HHHHHH-hcCCC--CCCCceEEEEeCCCcCCHHHHHHHHHHHHh---cCCCCeEEEEeCC
Confidence 11 111111 11111 123578999999999977666667766664 3567888888887
Q ss_pred CCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 003175 620 MDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADY 698 (842)
Q Consensus 620 ~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~ 698 (842)
...+.+.+.+|+. .+.|+|++.+++.++|..++...+ .+++++++.+++. ..||+|.++++++.+...
T Consensus 142 ---~~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~---~~G~~r~~~~~l~~~~~~--- 210 (319)
T 2chq_A 142 ---VSRIIEPIQSRCA--VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYI---SGGDFRKAINALQGAAAI--- 210 (319)
T ss_dssp ---GGGSCHHHHTTCE--EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHT---TTTCHHHHHHHHHHHHHS---
T ss_pred ---hhhcchHHHhhCe--EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHHc---
Confidence 4678899999995 699999999999999999987655 6788888887654 589999999988876531
Q ss_pred HHhhhccCCCcCCcCCCcccHHHHHHHHH
Q 003175 699 RIKKQTSNKNSASVGKSLVGMADVEAAIQ 727 (842)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~It~~dv~~A~~ 727 (842)
...|+.++|.+++.
T Consensus 211 ---------------~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 211 ---------------GEVVDADTIYQITA 224 (319)
T ss_dssp ---------------SSCBCHHHHHHHTT
T ss_pred ---------------CCCCCHHHHHHHHC
Confidence 23578888776654
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.70 E-value=2.5e-16 Score=171.62 Aligned_cols=185 Identities=18% Similarity=0.182 Sum_probs=135.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++|++..++.|..++.. +. .++.+|++||||||||++++++++.+. ..++++|+.... ...+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~----~~-~~~~~L~~G~~G~GKT~la~~la~~l~----------~~~~~i~~~~~~-~~~i 89 (324)
T 3u61_B 26 DECILPAFDKETFKSITSK----GK-IPHIILHSPSPGTGKTTVAKALCHDVN----------ADMMFVNGSDCK-IDFV 89 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHT----TC-CCSEEEECSSTTSSHHHHHHHHHHHTT----------EEEEEEETTTCC-HHHH
T ss_pred HHHhCcHHHHHHHHHHHHc----CC-CCeEEEeeCcCCCCHHHHHHHHHHHhC----------CCEEEEcccccC-HHHH
Confidence 5688999999888888763 22 357788889999999999999999885 669999987643 2111
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccc-cCChHHHHHhhcCCCCCCCcEEEEEEeC
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLV-TRNQSVLYNILDWPTKPNSKLIVIGIAN 618 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~-~~~~~~L~~ll~~~~~~~~~vivI~~tn 618 (842)
.. .+....... ...+.+.||||||+|.|. ...++.|+.+++.+ ...+.||+++|
T Consensus 90 ~~------------------~~~~~~~~~----~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~---~~~~~iI~~~n 144 (324)
T 3u61_B 90 RG------------------PLTNFASAA----SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY---SSNCSIIITAN 144 (324)
T ss_dssp HT------------------HHHHHHHBC----CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH---GGGCEEEEEES
T ss_pred HH------------------HHHHHHhhc----ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC---CCCcEEEEEeC
Confidence 11 122111111 112367999999999998 66788899988743 35677888998
Q ss_pred CCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcC-------cc-cCcH-HHHHHHHHHHHHHhcCHHHHHHHH
Q 003175 619 TMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKG-------IE-AFEK-QAIEFASRKVAAISGDARRALEIC 689 (842)
Q Consensus 619 ~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~-------~~-~~~~-~~l~~ia~~~~~~~Gd~R~al~ll 689 (842)
. ...+.+++.|||. .+.|++|+.+++.+|+...+.. .+ .+++ ++++++++. ..||+|.+++.|
T Consensus 145 ~---~~~l~~~l~sR~~--~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~---~~gd~R~a~~~L 216 (324)
T 3u61_B 145 N---IDGIIKPLQSRCR--VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKK---NFPDFRKTIGEL 216 (324)
T ss_dssp S---GGGSCTTHHHHSE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHH---TCSCTTHHHHHH
T ss_pred C---ccccCHHHHhhCc--EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHh---CCCCHHHHHHHH
Confidence 7 4578899999994 6999999999976665554432 12 4666 888887665 589999999999
Q ss_pred HHHH
Q 003175 690 RRAA 693 (842)
Q Consensus 690 ~~A~ 693 (842)
+.++
T Consensus 217 ~~~~ 220 (324)
T 3u61_B 217 DSYS 220 (324)
T ss_dssp HHHG
T ss_pred HHHh
Confidence 8876
No 45
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.69 E-value=9.3e-17 Score=166.23 Aligned_cols=211 Identities=18% Similarity=0.227 Sum_probs=146.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCC--------------CceE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIR--------------PYCF 525 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~--------------~~~~ 525 (842)
..++||+.+++.|...+.. +. .++.++|+||+|+|||++++.+++.+.........+ ...+
T Consensus 23 ~~~~g~~~~~~~l~~~l~~---~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSL---GR--IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 97 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHH---TC--CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSE
T ss_pred HHHhCcHHHHHHHHHHHHc---CC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcce
Confidence 4589999999999988875 11 246899999999999999999999887431100000 0012
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+.+++... .....+...+..... ....+.+.||||||+|.+....++.|+.+++..
T Consensus 98 ~~~~~~~~----------------------~~~~~~~~~~~~~~~-~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~- 153 (250)
T 1njg_A 98 IEIDAASR----------------------TKVEDTRDLLDNVQY-APARGRFKVYLIDEVHMLSRHSFNALLKTLEEP- 153 (250)
T ss_dssp EEEETTCG----------------------GGHHHHHHHHHSCCC-SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-
T ss_pred EEecCccc----------------------ccHHHHHHHHHHhhh-chhcCCceEEEEECcccccHHHHHHHHHHHhcC-
Confidence 22222110 011122233332211 112346799999999999766677788888643
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
...+.+|+++|. ...+.+.+.+|+ ..+.|+|++.+++.+++..++...+ .+++++++.+++. ..|++|.
T Consensus 154 --~~~~~~i~~t~~---~~~~~~~l~~r~--~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~---~~G~~~~ 223 (250)
T 1njg_A 154 --PEHVKFLLATTD---PQKLPVTILSRC--LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA---AEGSLRD 223 (250)
T ss_dssp --CTTEEEEEEESC---GGGSCHHHHTTS--EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHH---HTTCHHH
T ss_pred --CCceEEEEEeCC---hHhCCHHHHHHh--hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---cCCCHHH
Confidence 456788888886 456778888997 5799999999999999999986544 6788888776665 4899999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHH
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAI 726 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~ 726 (842)
+.++|++|+..+ ...|+.++|.+++
T Consensus 224 ~~~~~~~~~~~~-----------------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 224 ALSLTDQAIASG-----------------DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHTTT-----------------TSSBCHHHHHHHS
T ss_pred HHHHHHHHHhcc-----------------CceecHHHHHHHh
Confidence 999998885332 2479999998875
No 46
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.69 E-value=3.6e-16 Score=177.94 Aligned_cols=222 Identities=19% Similarity=0.298 Sum_probs=153.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcC------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 458 LPKFLPCRNKEMEDITAFIKGATCD------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 458 ~p~~L~gRe~e~~~l~~~l~~~i~~------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
..+.+.|.++.+.+|...+...... +...+.+++|+||||||||+|+++++..+. ..+++++|.
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~----------~~~i~i~g~ 98 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR----------VPFITASGS 98 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT----------CCEEEEEGG
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC----------CCEEEEehh
Confidence 3455778887777777666542110 112356799999999999999999998874 459999998
Q ss_pred cCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh-----------HHHHHh
Q 003175 532 KLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ-----------SVLYNI 600 (842)
Q Consensus 532 ~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~-----------~~L~~l 600 (842)
.+.... . ......+...|..+.. ..++|+||||+|.+....+ ..+..+
T Consensus 99 ~~~~~~--------------~--g~~~~~v~~lfq~a~~-----~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~L 157 (499)
T 2dhr_A 99 DFVEMF--------------V--GVGAARVRDLFETAKR-----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 157 (499)
T ss_dssp GGTSSC--------------T--THHHHHHHHHTTTSSS-----SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHH
T ss_pred HHHHhh--------------h--hhHHHHHHHHHHHHHh-----cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHH
Confidence 765420 0 1122345566765532 2578999999999875321 233333
Q ss_pred ---hcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHH
Q 003175 601 ---LDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKV 675 (842)
Q Consensus 601 ---l~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~ 675 (842)
++... ....+++|+++|.+ +.+++.+.+ ||. +.|.|++|+.+++.+||+.++......++..+.++++..
T Consensus 158 L~~Ldg~~-~~~~viviAatn~p---~~LD~aLlr~gRfd-r~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t 232 (499)
T 2dhr_A 158 LVEMDGFE-KDTAIVVMAATNRP---DILDPALLRPGRFD-RQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRT 232 (499)
T ss_dssp HHHGGGCC-SSCCCEEEECCSCG---GGSCTTTSSTTSSC-CEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTS
T ss_pred HHHhcccc-cCccEEEEEecCCh---hhcCcccccccccc-eEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhc
Confidence 44322 34568889999985 558888887 777 689999999999999999888765443444466666554
Q ss_pred HHHhcCH-HHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 676 AAISGDA-RRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 676 ~~~~Gd~-R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
.|+. +.+.++|.+|+..|..+ +...|+.+||..|+..+..
T Consensus 233 ---~G~~gadL~~lv~~Aa~~A~~~-------------~~~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 233 ---PGFVGADLENLLNEAALLAARE-------------GRRKITMKDLEEAADRVMM 273 (499)
T ss_dssp ---CSCCHHHHHHHHHHHHHHHTTT-------------CCSSCCSHHHHHHHHHHTT
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHh-------------CCCccCHHHHHHHHHHHhc
Confidence 5654 66678899998877643 2457999999999987754
No 47
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.69 E-value=2.1e-16 Score=167.69 Aligned_cols=201 Identities=14% Similarity=0.192 Sum_probs=136.4
Q ss_pred CCCCCCCcHHHHHHHHHH---HHHhhc-CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 458 LPKFLPCRNKEMEDITAF---IKGATC-DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 458 ~p~~L~gRe~e~~~l~~~---l~~~i~-~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
.+..+++....++.+... +...+. .+.....++||+||||||||++|+++++.+. ..++.+++...
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~----------~~~~~i~~~~~ 100 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN----------FPFIKICSPDK 100 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT----------CSEEEEECGGG
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC----------CCEEEEeCHHH
Confidence 345678888888887774 333332 1122467999999999999999999999864 56899987642
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc------CCh----HHHHHhhcC
Q 003175 534 ASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT------RNQ----SVLYNILDW 603 (842)
Q Consensus 534 ~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~------~~~----~~L~~ll~~ 603 (842)
. .|. ........+...|..... ..+.||||||+|.|.. ..+ +.|..+++.
T Consensus 101 ~-------------~g~--~~~~~~~~~~~~~~~~~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~ 160 (272)
T 1d2n_A 101 M-------------IGF--SETAKCQAMKKIFDDAYK-----SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKK 160 (272)
T ss_dssp C-------------TTC--CHHHHHHHHHHHHHHHHT-----SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTC
T ss_pred h-------------cCC--chHHHHHHHHHHHHHHHh-----cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcC
Confidence 1 121 111112233444443221 3579999999999843 222 445555554
Q ss_pred CCCCCCcEEEEEEeCCCCCccccch-hhhccCCceeEEecCCCH-HHHHHHHHHHhcCcccCcHHHHHHHHHHHHHH--h
Q 003175 604 PTKPNSKLIVIGIANTMDLPEKLLP-RISSRMGVQRLCFGPYNH-QQLQEIISSRLKGIEAFEKQAIEFASRKVAAI--S 679 (842)
Q Consensus 604 ~~~~~~~vivI~~tn~~dl~~~l~~-~l~sR~~~~~i~f~p~~~-~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~--~ 679 (842)
......+++||+++|.+ +.+++ .+.+||. ..|.||+++. +++..|+... ..++++.++.+++.+.++ .
T Consensus 161 ~~~~~~~~~ii~ttn~~---~~l~~~~l~~rf~-~~i~~p~l~~r~~i~~i~~~~----~~~~~~~~~~l~~~~~g~~~~ 232 (272)
T 1d2n_A 161 APPQGRKLLIIGTTSRK---DVLQEMEMLNAFS-TTIHVPNIATGEQLLEALELL----GNFKDKERTTIAQQVKGKKVW 232 (272)
T ss_dssp CCSTTCEEEEEEEESCH---HHHHHTTCTTTSS-EEEECCCEEEHHHHHHHHHHH----TCSCHHHHHHHHHHHTTSEEE
T ss_pred ccCCCCCEEEEEecCCh---hhcchhhhhcccc-eEEcCCCccHHHHHHHHHHhc----CCCCHHHHHHHHHHhcCCCcc
Confidence 33356678899999974 44555 6788997 6799999987 8888887764 357888888888876543 4
Q ss_pred cCHHHHHHHHHHHHHHH
Q 003175 680 GDARRALEICRRAAEIA 696 (842)
Q Consensus 680 Gd~R~al~ll~~A~~~A 696 (842)
|++|+++++++.|...+
T Consensus 233 g~ir~l~~~l~~a~~~~ 249 (272)
T 1d2n_A 233 IGIKKLLMLIEMSLQMD 249 (272)
T ss_dssp ECHHHHHHHHHHHTTSC
T ss_pred ccHHHHHHHHHHHhhhc
Confidence 59999999998887543
No 48
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.68 E-value=1.9e-16 Score=164.19 Aligned_cols=185 Identities=13% Similarity=0.128 Sum_probs=134.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
+.+++|+||||||||++++.+++.+... ...++++++..+... + .+.+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~-------~~~~~~~~~~~~~~~------~------------------~~~~~ 100 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANEL-------ERRSFYIPLGIHASI------S------------------TALLE 100 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEGGGGGGS------C------------------GGGGT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHH------H------------------HHHHH
Confidence 6899999999999999999999998754 145888888664321 0 00111
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCC--hHHHHHhhcCCCCCCCcEEEEEEeCC-CCCccccchhhhccCCc-eeEEec
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRN--QSVLYNILDWPTKPNSKLIVIGIANT-MDLPEKLLPRISSRMGV-QRLCFG 642 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~--~~~L~~ll~~~~~~~~~vivI~~tn~-~dl~~~l~~~l~sR~~~-~~i~f~ 642 (842)
. ...+.||||||+|.+.... ++.|+.+++.... ...+.+|.+++. .+....+++.+.+||.. ..+.|+
T Consensus 101 ~-------~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~-~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~ 172 (242)
T 3bos_A 101 G-------LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAE-QKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQ 172 (242)
T ss_dssp T-------GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHH-HCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECC
T ss_pred h-------ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHH-cCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeC
Confidence 0 1246799999999998766 7778888764322 223323334543 32333456888999831 469999
Q ss_pred CCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHH
Q 003175 643 PYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMAD 721 (842)
Q Consensus 643 p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~d 721 (842)
+++.+++.+|+..++...+ .+++++++++++. ..||+|.+.++++.+...|..+ ...|+.++
T Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~---~~g~~r~l~~~l~~~~~~a~~~--------------~~~It~~~ 235 (242)
T 3bos_A 173 PMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNR---MARDLRTLFDVLDRLDKASMVH--------------QRKLTIPF 235 (242)
T ss_dssp CCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHH---TTTCHHHHHHHHHHHHHHHHHH--------------TCCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---ccCCHHHHHHHHHHHHHHHHHh--------------CCCCcHHH
Confidence 9999999999999987544 6788888887765 4899999999999999887544 24699999
Q ss_pred HHHHHH
Q 003175 722 VEAAIQ 727 (842)
Q Consensus 722 v~~A~~ 727 (842)
|.+++.
T Consensus 236 v~~~l~ 241 (242)
T 3bos_A 236 VKEMLR 241 (242)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 998874
No 49
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=6e-16 Score=169.77 Aligned_cols=212 Identities=17% Similarity=0.234 Sum_probs=147.5
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHH
Q 003175 461 FLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIY 540 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~ 540 (842)
.+.|.+..++.|...+.. +. ..+++|+||+|||||++++++++.+..... ...++++|+........+.
T Consensus 26 ~~~g~~~~~~~L~~~i~~----g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~~~~~~~~~~~~~ir 94 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDE----GK--LPHLLFYGPPGTGKTSTIVALAREIYGKNY-----SNMVLELNASDDRGIDVVR 94 (340)
T ss_dssp GCCSCHHHHHHHHHHHHT----TC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSH-----HHHEEEECTTSCCSHHHHH
T ss_pred HhcCcHHHHHHHHHHHhc----CC--CceEEEECCCCCCHHHHHHHHHHHHcCCCc-----cceEEEEcCcccccHHHHH
Confidence 356787777776666553 43 234999999999999999999999864321 1457888876543321111
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCC
Q 003175 541 RVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTM 620 (842)
Q Consensus 541 ~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~ 620 (842)
+.+.........+ ...+.|+||||+|.|....++.|+.+++.+ .....||+++|.
T Consensus 95 ------------------~~i~~~~~~~~~~---~~~~~viiiDe~~~l~~~~~~~L~~~le~~---~~~~~~il~~n~- 149 (340)
T 1sxj_C 95 ------------------NQIKDFASTRQIF---SKGFKLIILDEADAMTNAAQNALRRVIERY---TKNTRFCVLANY- 149 (340)
T ss_dssp ------------------THHHHHHHBCCSS---SCSCEEEEETTGGGSCHHHHHHHHHHHHHT---TTTEEEEEEESC-
T ss_pred ------------------HHHHHHHhhcccC---CCCceEEEEeCCCCCCHHHHHHHHHHHhcC---CCCeEEEEEecC-
Confidence 1122222111111 124689999999999887788899999854 345667777876
Q ss_pred CCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 003175 621 DLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYR 699 (842)
Q Consensus 621 dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~ 699 (842)
...+.+.+.||+. .+.|.+++.+++.+++..++...+ .+++++++++++. +.||+|+++++++.+...+.
T Consensus 150 --~~~i~~~i~sR~~--~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~---s~G~~r~~~~~l~~~~~~~~-- 220 (340)
T 1sxj_C 150 --AHKLTPALLSQCT--RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIEL---SNGDMRRVLNVLQSCKATLD-- 220 (340)
T ss_dssp --GGGSCHHHHTTSE--EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHH---HTTCHHHHHHHTTTTTTTTC--
T ss_pred --ccccchhHHhhce--eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHHhcC--
Confidence 5788999999995 699999999999999999886443 5788888887765 48999999988876543221
Q ss_pred HhhhccCCCcCCcCCCcccHHHHHHHHHH
Q 003175 700 IKKQTSNKNSASVGKSLVGMADVEAAIQE 728 (842)
Q Consensus 700 ~~~~~~~~~~~~~~~~~It~~dv~~A~~~ 728 (842)
..+...|+.++|.+++..
T Consensus 221 -----------~~~~~~it~~~v~~~~~~ 238 (340)
T 1sxj_C 221 -----------NPDEDEISDDVIYECCGA 238 (340)
T ss_dssp -----------SSSCCCBCHHHHHHHTTC
T ss_pred -----------CcccccccHHHHHHHhCC
Confidence 011236888888877653
No 50
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.68 E-value=7.1e-16 Score=163.48 Aligned_cols=244 Identities=21% Similarity=0.286 Sum_probs=149.3
Q ss_pred cccccCcccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHh
Q 003175 436 EHVRCHKQTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEV 515 (842)
Q Consensus 436 ~~~~~~~~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~ 515 (842)
+.++|.++.++..+++.|....+ ++-+.. ..+... . -..+.+++|+||||||||+|+++++..+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~------~~l~~~-~--l~~~~GvlL~Gp~GtGKTtLakala~~~~--- 69 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNP------DQFKAL-G--LVTPAGVLLAGPPGCGKTLLAKAVANESG--- 69 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSH------HHHHHT-T--CCCCSEEEEESSTTSCHHHHHHHHHHHTT---
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCH------HHHHHc-C--CCCCCeEEEECCCCCcHHHHHHHHHHHcC---
Confidence 35788999999998888864321 000000 112221 1 11346699999999999999999999865
Q ss_pred hcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC--
Q 003175 516 ESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-- 593 (842)
Q Consensus 516 ~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-- 593 (842)
..++++++..+.+.. .......+...|..+.. ..|+|+|+||+|.+....
T Consensus 70 -------~~~i~i~g~~l~~~~----------------~~~~~~~i~~vf~~a~~-----~~p~i~~~Deid~~~~~r~~ 121 (274)
T 2x8a_A 70 -------LNFISVKGPELLNMY----------------VGESERAVRQVFQRAKN-----SAPCVIFFDEVDALCPRRSD 121 (274)
T ss_dssp -------CEEEEEETTTTCSST----------------THHHHHHHHHHHHHHHH-----TCSEEEEEETCTTTCC----
T ss_pred -------CCEEEEEcHHHHhhh----------------hhHHHHHHHHHHHHHHh-----cCCCeEeeehhhhhhcccCC
Confidence 458999988765421 11222334445544321 257899999999986432
Q ss_pred ---------hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCc--
Q 003175 594 ---------QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGI-- 660 (842)
Q Consensus 594 ---------~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~-- 660 (842)
.+.+...++... ....+++++++|. ++.+++.+.+ ||. +.|.|+.++.+++.+||+..++..
T Consensus 122 ~~~~~~~~~~~~~l~~Lsgg~-~~~~~i~ia~tn~---p~~LD~al~r~gRfd-~~i~~~~P~~~~r~~il~~~~~~~~~ 196 (274)
T 2x8a_A 122 RETGASVRVVNQLLTEMDGLE-ARQQVFIMAATNR---PDIIDPAILRPGRLD-KTLFVGLPPPADRLAILKTITKNGTK 196 (274)
T ss_dssp -----CTTHHHHHHHHHHTCC-STTCEEEEEEESC---GGGSCHHHHSTTSSC-EEEECCSCCHHHHHHHHHHHTTTTBT
T ss_pred CcchHHHHHHHHHHHhhhccc-ccCCEEEEeecCC---hhhCCHhhcCcccCC-eEEEeCCcCHHHHHHHHHHHHhcccC
Confidence 123444444332 3456888999998 4667888887 998 789999999999999999988542
Q ss_pred -ccCcHHHHHHHHHHH--HHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhC
Q 003175 661 -EAFEKQAIEFASRKV--AAISG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 661 -~~~~~~~l~~ia~~~--~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
....+..++.++... .+++| |+. .+|+.|+..|.++...... .....+...|+.+||..|+..+..+
T Consensus 197 ~~~~~~~~~~~la~~~~~~g~sgadl~---~l~~~a~~~a~~~~~~~~~--~~~~~~~~~i~~~df~~al~~~~ps 267 (274)
T 2x8a_A 197 PPLDADVNLEAIAGDLRCDCYTGADLS---ALVREASICALRQEMARQK--SGNEKGELKVSHKHFEEAFKKVRSS 267 (274)
T ss_dssp TBBCTTCCHHHHHTCSGGGSCCHHHHH---HHHHHHHHHHHHHHC-------------CCBCHHHHHHHHTTCCCC
T ss_pred CCCccccCHHHHHHhhccCCcCHHHHH---HHHHHHHHHHHHHHHhhcc--ccccccCCeecHHHHHHHHHHhcCC
Confidence 122333455555542 25555 454 5899999888765321110 0111124579999999999877654
No 51
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.67 E-value=1.5e-18 Score=183.83 Aligned_cols=223 Identities=21% Similarity=0.278 Sum_probs=146.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhcC-------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 459 PKFLPCRNKEMEDITAFIKGATCD-------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 459 p~~L~gRe~e~~~l~~~l~~~i~~-------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
.+.++|.+..++.|...+.. +.. +...+.++||+||||||||++++++++++. ..+++++|.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~----------~~~~~v~~~ 78 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH----------VPFFSMGGS 78 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT----------CCCCCCCSC
T ss_pred HHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC----------CCEEEechH
Confidence 35677888888887776653 221 112356799999999999999999999875 457888887
Q ss_pred cCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC---------------hHH
Q 003175 532 KLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN---------------QSV 596 (842)
Q Consensus 532 ~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~---------------~~~ 596 (842)
.+.+. +.|.... .+...|..+.. ..+.||||||+|.|.... +..
T Consensus 79 ~~~~~----------~~~~~~~------~~~~~~~~a~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ 137 (268)
T 2r62_A 79 SFIEM----------FVGLGAS------RVRDLFETAKK-----QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQ 137 (268)
T ss_dssp TTTTS----------CSSSCSS------SSSTTHHHHHH-----SCSCEEEESCGGGTTC----------CCCSCSSTTT
T ss_pred HHHHh----------hcchHHH------HHHHHHHHHHh-----cCCeEEEEeChhhhcccccccccCCCchhHHHHHHH
Confidence 65432 1111100 00111111110 256899999999997642 223
Q ss_pred HHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHH
Q 003175 597 LYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRK 674 (842)
Q Consensus 597 L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~ 674 (842)
|+..++.......+++||+++|.. +.+++.+.+ ||. ..|.|++|+.+++.+||+.++......++..++.+++.
T Consensus 138 ll~~l~~~~~~~~~v~vi~ttn~~---~~ld~~l~r~~Rf~-~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~ 213 (268)
T 2r62_A 138 LLAEMDGFGSENAPVIVLAATNRP---EILDPALMRPGRFD-RQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKL 213 (268)
T ss_dssp TTTTTTCSSCSCSCCEEEECBSCC---TTSCGGGGSSSSSC-CCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSS
T ss_pred HHHHhhCcccCCCCEEEEEecCCc---hhcCHhHcCCCCCC-eEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHH
Confidence 344444333334568999999985 456777777 887 57999999999999999999987654444445556655
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhC
Q 003175 675 VAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 675 ~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
..+++| +.+.++|++|...|..+ +...|+.+||..|+..+...
T Consensus 214 ~~g~~g--~dl~~l~~~a~~~a~~~-------------~~~~i~~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 214 TAGLAG--ADLANIINEAALLAGRN-------------NQKEVRQQHLKEAVERGIAG 256 (268)
T ss_dssp SCSSCH--HHHHHHHHHHHHTTSSS-------------CCCSCCHHHHHTSCTTCCCC
T ss_pred cCCCCH--HHHHHHHHHHHHHHHHh-------------ccCCcCHHHHHHHHHHHhhc
Confidence 544444 55567888888776432 24579999999888766543
No 52
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.67 E-value=3e-16 Score=177.72 Aligned_cols=232 Identities=14% Similarity=0.166 Sum_probs=152.8
Q ss_pred hccccCCCCCCC-CcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEec
Q 003175 452 TLLLATLPKFLP-CRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNG 530 (842)
Q Consensus 452 ~L~~~~~p~~L~-gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~ 530 (842)
.|.+.+.++.++ |...++ . ...+......... +++++|+||||+|||+|++++++.+.... +...++++++
T Consensus 97 ~l~~~~tfd~fv~g~~n~~-a-~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~-----~~~~v~~v~~ 168 (440)
T 2z4s_A 97 PLNPDYTFENFVVGPGNSF-A-YHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITS 168 (440)
T ss_dssp CCCTTCSGGGCCCCTTTHH-H-HHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHC-----CSSCEEEEEH
T ss_pred CCCCCCChhhcCCCCchHH-H-HHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeH
Confidence 355555555665 544443 2 2333333333322 67899999999999999999999987542 2256899988
Q ss_pred ccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC--ChHHHHHhhcCCCCCC
Q 003175 531 LKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR--NQSVLYNILDWPTKPN 608 (842)
Q Consensus 531 ~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~--~~~~L~~ll~~~~~~~ 608 (842)
..+ ...+...+.... ...+...+. ..+.||||||+|.+... .++.|+.+++.... .
T Consensus 169 ~~~------~~~~~~~~~~~~------~~~~~~~~~---------~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~ 226 (440)
T 2z4s_A 169 EKF------LNDLVDSMKEGK------LNEFREKYR---------KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-S 226 (440)
T ss_dssp HHH------HHHHHHHHHTTC------HHHHHHHHT---------TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-T
T ss_pred HHH------HHHHHHHHHccc------HHHHHHHhc---------CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-C
Confidence 764 222222222210 111222221 14579999999999873 57778888764322 3
Q ss_pred CcEEEEEEeCCCCCccccchhhhccCCc-eeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHH
Q 003175 609 SKLIVIGIANTMDLPEKLLPRISSRMGV-QRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRAL 686 (842)
Q Consensus 609 ~~vivI~~tn~~dl~~~l~~~l~sR~~~-~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al 686 (842)
...+||++.+.+.....+.+++.+||.. ..+.|++|+.+++.+||..++...+ .++++++++++.. ..||+|.++
T Consensus 227 ~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~---~~gn~R~l~ 303 (440)
T 2z4s_A 227 GKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAEN---VDDNLRRLR 303 (440)
T ss_dssp TCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHH---CCSCHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh---cCCCHHHHH
Confidence 3455555444443334578899999942 4688999999999999999987544 5788889988765 479999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHh
Q 003175 687 EICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMF 730 (842)
Q Consensus 687 ~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~ 730 (842)
.+|.++...|... ...|+.+++.+++....
T Consensus 304 ~~L~~~~~~a~~~--------------~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 304 GAIIKLLVYKETT--------------GKEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHHHHHS--------------SSCCCHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHh--------------CCCCCHHHHHHHHHHHh
Confidence 9999999887643 12467777766665443
No 53
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=5.1e-16 Score=179.73 Aligned_cols=221 Identities=14% Similarity=0.201 Sum_probs=147.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCC-----------cccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEE
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDD-----------QCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEV 528 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~-----------~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~i 528 (842)
+.++|++.+++.|..++....... ....+++||+||||||||++|++++++++ +.++++
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----------~~~i~i 108 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----------YDILEQ 108 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----------CEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----------CCEEEE
Confidence 558999999999999998643211 01357999999999999999999999984 679999
Q ss_pred ecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh---HHHHHhhcCCC
Q 003175 529 NGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ---SVLYNILDWPT 605 (842)
Q Consensus 529 n~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~---~~L~~ll~~~~ 605 (842)
||....+...+...+...+.... +...|............+.||||||+|.|....+ ..|+++++.
T Consensus 109 n~s~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-- 177 (516)
T 1sxj_A 109 NASDVRSKTLLNAGVKNALDNMS---------VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-- 177 (516)
T ss_dssp CTTSCCCHHHHHHTGGGGTTBCC---------STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--
T ss_pred eCCCcchHHHHHHHHHHHhcccc---------HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--
Confidence 99988775432222211110000 0111111100011235679999999999988766 566666653
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
...++++| +|+... ...+.+.+|+ ..|.|++++.+++.++|...+...+ .+++++++.+++. ..||+|.
T Consensus 178 -~~~~iIli--~~~~~~--~~l~~l~~r~--~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~---s~GdiR~ 247 (516)
T 1sxj_A 178 -TSTPLILI--CNERNL--PKMRPFDRVC--LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQT---TRGDIRQ 247 (516)
T ss_dssp -CSSCEEEE--ESCTTS--STTGGGTTTS--EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHH---TTTCHHH
T ss_pred -cCCCEEEE--EcCCCC--ccchhhHhce--EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCcHHH
Confidence 34455554 454321 1234566666 4699999999999999998876543 5788888887655 4899999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHH
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEM 729 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~ 729 (842)
++++++.+.. . ...|+.+++.+++...
T Consensus 248 ~i~~L~~~~~----~--------------~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 248 VINLLSTIST----T--------------TKTINHENINEISKAW 274 (516)
T ss_dssp HHHHHTHHHH----H--------------SSCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHh----c--------------CCCCchHHHHHHHHhh
Confidence 9999876542 1 2457777777666543
No 54
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.66 E-value=4.3e-15 Score=162.31 Aligned_cols=224 Identities=16% Similarity=0.202 Sum_probs=158.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
..++|++..++.+...+.. +.+++|+||||||||++++++++.+. ..++.++|.....+.++
T Consensus 27 ~~i~g~~~~~~~l~~~l~~--------~~~vll~G~pGtGKT~la~~la~~~~----------~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICT--------GGHILLEGVPGLAKTLSVNTLAKTMD----------LDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHH--------TCCEEEESCCCHHHHHHHHHHHHHTT----------CCEEEEECCTTCCHHHH
T ss_pred cceeCcHHHHHHHHHHHHc--------CCeEEEECCCCCcHHHHHHHHHHHhC----------CCeEEEecCCCCChhhc
Confidence 4578999999888777765 46899999999999999999999875 34788888654444322
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC--------CCCCcE
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT--------KPNSKL 611 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~--------~~~~~v 611 (842)
. |.... .. -...|... ...-...||||||+|.+....++.|+.+++... ....++
T Consensus 89 ~--------g~~~~-~~----~~~~~~~~----~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~ 151 (331)
T 2r44_A 89 I--------GTMIY-NQ----HKGNFEVK----KGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPF 151 (331)
T ss_dssp H--------EEEEE-ET----TTTEEEEE----ECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSC
T ss_pred C--------Cceee-cC----CCCceEec----cCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCE
Confidence 1 11000 00 00000000 000012699999999998877888888886321 124467
Q ss_pred EEEEEeCCCCCcc--ccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc-----------------------ccCcHH
Q 003175 612 IVIGIANTMDLPE--KLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI-----------------------EAFEKQ 666 (842)
Q Consensus 612 ivI~~tn~~dl~~--~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~-----------------------~~~~~~ 666 (842)
+||+++|..+... .+++++.+||. ..+.|++++.+++.+||+.++... -.++++
T Consensus 152 ~viat~np~~~~~~~~l~~~l~~Rf~-~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~ 230 (331)
T 2r44_A 152 LVLATQNPVEQEGTYPLPEAQVDRFM-MKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISES 230 (331)
T ss_dssp EEEEEECTTCCSCCCCCCHHHHTTSS-EEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHH
T ss_pred EEEEecCCCcccCcccCCHHHHhhee-EEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHH
Confidence 8888888655333 38899999997 469999999999999999987642 136788
Q ss_pred HHHHHHHHHHHH--hc---------------CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHH
Q 003175 667 AIEFASRKVAAI--SG---------------DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEM 729 (842)
Q Consensus 667 ~l~~ia~~~~~~--~G---------------d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~ 729 (842)
+++++++.+... .| ++|.++.+++.|...|..+ +...|+.+||.+|+..+
T Consensus 231 ~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~-------------g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 231 LEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN-------------NRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT-------------TCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc-------------CCCCCCHHHHHHHHHHH
Confidence 888888776432 22 6999999999998888755 35679999999999877
Q ss_pred hhC
Q 003175 730 FQA 732 (842)
Q Consensus 730 ~~~ 732 (842)
...
T Consensus 298 l~~ 300 (331)
T 2r44_A 298 LNH 300 (331)
T ss_dssp HTT
T ss_pred hHh
Confidence 643
No 55
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.66 E-value=1.1e-15 Score=160.43 Aligned_cols=189 Identities=21% Similarity=0.347 Sum_probs=128.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
+.+++|+||||||||+|+++++..+. ..++++++..+.. ...+ .....+...|.
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~----------~~~i~~~~~~~~~----------~~~~------~~~~~i~~~~~ 102 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEAR----------VPFITASGSDFVE----------MFVG------VGAARVRDLFE 102 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTT----------CCEEEEEHHHHHH----------SCTT------HHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC----------CCEEEeeHHHHHH----------HHhh------HHHHHHHHHHH
Confidence 45699999999999999999998774 3478888754211 0001 11223444554
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCCh--------------HHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRNQ--------------SVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS 632 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~~--------------~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s 632 (842)
.... ..+.+++|||+|.+..... +.|+..++... ....+++++++|.+ +.+++.+.+
T Consensus 103 ~~~~-----~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~-~~~~~i~~a~t~~p---~~ld~~l~r 173 (254)
T 1ixz_A 103 TAKR-----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-KDTAIVVMAATNRP---DILDPALLR 173 (254)
T ss_dssp HHTT-----SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC-TTCCEEEEEEESCG---GGSCGGGGS
T ss_pred HHHh-----cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC-CCCCEEEEEccCCc---hhCCHHHcC
Confidence 4321 2578999999998864321 23344444332 34568888999984 668888887
Q ss_pred --cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcC
Q 003175 633 --RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSA 710 (842)
Q Consensus 633 --R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~ 710 (842)
||. ..|.|++|+.+++.+||+.++......++..+.++++...+++ .+.+.++|++|+..|..+
T Consensus 174 ~~rf~-~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~--~~dl~~~~~~a~~~a~~~----------- 239 (254)
T 1ixz_A 174 PGRFD-RQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV--GADLENLLNEAALLAARE----------- 239 (254)
T ss_dssp TTSSC-EEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC--HHHHHHHHHHHHHHHHHT-----------
T ss_pred CCcCC-eEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHh-----------
Confidence 777 6899999999999999998887654444444666666543333 256667899998888654
Q ss_pred CcCCCcccHHHHHHHH
Q 003175 711 SVGKSLVGMADVEAAI 726 (842)
Q Consensus 711 ~~~~~~It~~dv~~A~ 726 (842)
+...|+.+|+.+|+
T Consensus 240 --~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 240 --GRRKITMKDLEEAA 253 (254)
T ss_dssp --TCSSBCHHHHHHHT
T ss_pred --cCCCcCHHHHHHHh
Confidence 24579999999875
No 56
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.64 E-value=6.7e-16 Score=179.30 Aligned_cols=304 Identities=18% Similarity=0.139 Sum_probs=175.0
Q ss_pred chhhhhccccCCCCCccccccccccCCCCCCCCCCccccccCCccccccccccccccccCcccccCcccHHHHHHHhccc
Q 003175 376 SDEDWKSSKAADSDTDEDMEFEDEDGKHLHTGPSPAHELAANSQRGRFFGLQKIGRKRIPEHVRCHKQTELERAKATLLL 455 (842)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~L~~ 455 (842)
+.+++..+.+....+++..+...++.+++...+..+.+.... ..+ --+...+||.....+...+..+++.|..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~~~~~~e~~~~---~~~----l~~~~~lp~~~~~~~~~~~~~~~~~l~~ 81 (543)
T 3m6a_A 9 EVQTLTEKIEEAGMPDHVKETALKELNRYEKIPSSSAESSVI---RNY----IDWLVALPWTDETDDKLDLKEAGRLLDE 81 (543)
T ss_dssp TTTHHHHHHHSSSCCCHHHHHHHHHHHSSCCCSSSCTTTTHH---HHH----HHHHHHSCSSCCCCCCCCTTTGGGTHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCCCchHhHH---HHH----HHHHhcCCCCccccccccHHHHHHHHHH
Confidence 344555555555556665555556666666555444321000 000 0011234543333333334444444442
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC
Q 003175 456 ATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS 535 (842)
Q Consensus 456 ~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s 535 (842)
.+.|.++....+..++.-........+.+++|+||||||||+++++++..+. ..++.+++..+.+
T Consensus 82 -----di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~----------~~~~~i~~~~~~~ 146 (543)
T 3m6a_A 82 -----EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG----------RKFVRISLGGVRD 146 (543)
T ss_dssp -----HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT----------CEEEEECCCC---
T ss_pred -----HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC----------CCeEEEEecccch
Confidence 3568888888887665433222222478899999999999999999999985 5688999877554
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC----hHHHHHhhcCCCCC----
Q 003175 536 PENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN----QSVLYNILDWPTKP---- 607 (842)
Q Consensus 536 ~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~----~~~L~~ll~~~~~~---- 607 (842)
...++..... ..| .....+...|..+.. ...||||||+|.+.... ++.|+.+++.....
T Consensus 147 ~~~~~g~~~~-~ig------~~~~~~~~~~~~a~~------~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~ 213 (543)
T 3m6a_A 147 ESEIRGHRRT-YVG------AMPGRIIQGMKKAGK------LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSD 213 (543)
T ss_dssp ------------------------CHHHHHHTTCS------SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCC
T ss_pred hhhhhhHHHH-Hhc------cCchHHHHHHHHhhc------cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeec
Confidence 3222211110 001 111223334544321 23499999999998763 36677777532211
Q ss_pred --------CCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcC-------c---c-cCcHHHH
Q 003175 608 --------NSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKG-------I---E-AFEKQAI 668 (842)
Q Consensus 608 --------~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~-------~---~-~~~~~~l 668 (842)
..+++||+++|.. +.+++.+.+||. .|.|++|+.+++.+|+..++.. . . .++++++
T Consensus 214 ~~~~~~~~~~~v~iI~ttN~~---~~l~~aL~~R~~--vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l 288 (543)
T 3m6a_A 214 HYIEETFDLSKVLFIATANNL---ATIPGPLRDRME--IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAI 288 (543)
T ss_dssp SSSCCCCBCSSCEEEEECSST---TTSCHHHHHHEE--EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHH
T ss_pred ccCCeeecccceEEEeccCcc---ccCCHHHHhhcc--eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHH
Confidence 1578999999984 678899999994 6999999999999999987621 1 1 4678888
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHH
Q 003175 669 EFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQ 727 (842)
Q Consensus 669 ~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~ 727 (842)
+.+++.+. ..|++|...+.+.+++..+..+... ...+...|+.+++.+++.
T Consensus 289 ~~l~~~~~-~~~~vR~L~~~i~~~~~~aa~~~~~-------~~~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 289 LDIIRYYT-REAGVRSLERQLAAICRKAAKAIVA-------EERKRITVTEKNLQDFIG 339 (543)
T ss_dssp HHHHHHHC-CCSSSHHHHHHHHHHHHHHHHHHHT-------TCCSCCEECTTTTHHHHC
T ss_pred HHHHHhCC-hhhchhHHHHHHHHHHHHHHHHHHh-------cCCcceecCHHHHHHHhC
Confidence 87766432 2367887766766666655443221 011245688888888775
No 57
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.62 E-value=5.4e-15 Score=157.38 Aligned_cols=215 Identities=20% Similarity=0.339 Sum_probs=138.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhc-----C-CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 460 KFLPCRNKEMEDITAFIKGATC-----D-DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~-----~-~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
+.+.|.+....++.......-. + +...+.+++|+||+|||||+|+++++..+. ..++++++..+
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~----------~~~i~~~~~~~ 109 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR----------VPFITASGSDF 109 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT----------CCEEEEEHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC----------CCEEEecHHHH
Confidence 4456666666666555433210 0 111245699999999999999999998774 34888887542
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHh--
Q 003175 534 ASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNI-- 600 (842)
Q Consensus 534 ~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~l-- 600 (842)
.. ...+ .....+...|..... ..+.+++|||+|.+.... +..+..+
T Consensus 110 ~~----------~~~~------~~~~~i~~~~~~~~~-----~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~ 168 (278)
T 1iy2_A 110 VE----------MFVG------VGAARVRDLFETAKR-----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 168 (278)
T ss_dssp HH----------STTT------HHHHHHHHHHHHHHT-----SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHH
T ss_pred HH----------HHhh------HHHHHHHHHHHHHHh-----cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHH
Confidence 11 0001 112233444444321 246899999999886432 2233333
Q ss_pred -hcCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHH
Q 003175 601 -LDWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAA 677 (842)
Q Consensus 601 -l~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~ 677 (842)
++.. .....+++++++|.+ +.+++.+.+ ||. ..|.|++|+.+++.+||+.++......++..+.+++...
T Consensus 169 ~lsgg-~~~~~~i~~a~t~~p---~~ld~~l~r~~rf~-~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~-- 241 (278)
T 1iy2_A 169 EMDGF-EKDTAIVVMAATNRP---DILDPALLRPGRFD-RQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRT-- 241 (278)
T ss_dssp HHTTC-CTTCCEEEEEEESCT---TSSCHHHHSTTSSC-CEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTC--
T ss_pred HHhCC-CCCCCEEEEEecCCc---hhCCHhHcCCCcCC-eEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHc--
Confidence 3322 234458888999985 557888877 777 589999999999999999988765443444466666554
Q ss_pred HhcCH-HHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHH
Q 003175 678 ISGDA-RRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAI 726 (842)
Q Consensus 678 ~~Gd~-R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~ 726 (842)
.|+. +.+..+|++|+..|..+ +...|+.+||.+|+
T Consensus 242 -~G~~~~dl~~l~~~a~~~a~~~-------------~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 242 -PGFVGADLENLLNEAALLAARE-------------GRRKITMKDLEEAA 277 (278)
T ss_dssp -TTCCHHHHHHHHHHHHHHHHHT-------------TCCSBCHHHHHHHT
T ss_pred -CCCCHHHHHHHHHHHHHHHHHh-------------CCCCcCHHHHHHHh
Confidence 5544 55567899998887654 24579999999875
No 58
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.62 E-value=1.8e-15 Score=163.72 Aligned_cols=218 Identities=15% Similarity=0.198 Sum_probs=154.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcC---CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCCh
Q 003175 460 KFLPCRNKEMEDITAFIKGATCD---DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASP 536 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~---~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~ 536 (842)
..++|++..++.|...+.....+ ...+..+++|+||||||||++++++++.+.... ..+++++|..+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~-------~~~~~~~~~~~~~~ 89 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE-------EAMIRIDMTEYMEK 89 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG-------GGEEEEEGGGCCST
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC-------cceEEeeccccccc
Confidence 45789999999999999886433 221235899999999999999999999986432 45899999987765
Q ss_pred HHHHHHHHHHHhCCCC---CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCC------
Q 003175 537 ENIYRVIYEALSGHRV---SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKP------ 607 (842)
Q Consensus 537 ~~~~~~i~~~l~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~------ 607 (842)
..... +.|... ++.. ...+...+... ...||||||+|.+....++.|+.+++.....
T Consensus 90 ~~~~~-----l~g~~~~~~~~~~-~~~~~~~~~~~--------~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~ 155 (311)
T 4fcw_A 90 HAVSR-----LIGAPPGYVGYEE-GGQLTEAVRRR--------PYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRT 155 (311)
T ss_dssp THHHH-----HHCCCTTSTTTTT-CCHHHHHHHHC--------SSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCE
T ss_pred ccHHH-----hcCCCCccccccc-cchHHHHHHhC--------CCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCE
Confidence 32222 223211 1110 01222222221 3479999999999887888999998743211
Q ss_pred --CCcEEEEEEeCCC---------------CC--------ccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc--
Q 003175 608 --NSKLIVIGIANTM---------------DL--------PEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI-- 660 (842)
Q Consensus 608 --~~~vivI~~tn~~---------------dl--------~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~-- 660 (842)
-.+++||+++|.. ++ ...+.+.+.+||. ..+.|+|++.+++.+|+...+...
T Consensus 156 ~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~-~~~~~~p~~~~~~~~i~~~~l~~~~~ 234 (311)
T 4fcw_A 156 VDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLD-EIVVFRPLTKEQIRQIVEIQMSYLRA 234 (311)
T ss_dssp EECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCS-EEEECCCCCHHHHHHHHHHHTHHHHH
T ss_pred EECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCC-eEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 1367799999972 11 3467788999997 578999999999999999987642
Q ss_pred --------ccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 003175 661 --------EAFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYR 699 (842)
Q Consensus 661 --------~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~ 699 (842)
..+++++++.+++......|++|.+.+++++++..+..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 281 (311)
T 4fcw_A 235 RLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 281 (311)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHH
T ss_pred HHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHH
Confidence 258889999887653222689999889999888866544
No 59
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.57 E-value=3.8e-14 Score=154.87 Aligned_cols=190 Identities=18% Similarity=0.239 Sum_probs=132.3
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhc----------------CCCCCceE
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVES----------------GSIRPYCF 525 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~----------------~~~~~~~~ 525 (842)
+|..++.++.|...+. .+. .++.+||+||+|+|||++++.+++.+.+.... +.. ..+
T Consensus 4 ~pw~~~~~~~l~~~i~----~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~--~d~ 76 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQ----AGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH--PDY 76 (334)
T ss_dssp CGGGHHHHHHHHHHHH----TTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC--TTE
T ss_pred CCchHHHHHHHHHHHH----cCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC--CCE
Confidence 4455555555555443 343 46789999999999999999999998754211 111 224
Q ss_pred EEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 526 VEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 526 v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
+.+++..- +...+.++..+ +.+.+... ...+...|+||||+|.|....++.|+..++.
T Consensus 77 ~~~~~~~~---------------~~~~~i~~ir~-l~~~~~~~----~~~~~~kvviIdead~l~~~a~naLLk~lEe-- 134 (334)
T 1a5t_A 77 YTLAPEKG---------------KNTLGVDAVRE-VTEKLNEH----ARLGGAKVVWVTDAALLTDAAANALLKTLEE-- 134 (334)
T ss_dssp EEECCCTT---------------CSSBCHHHHHH-HHHHTTSC----CTTSSCEEEEESCGGGBCHHHHHHHHHHHTS--
T ss_pred EEEecccc---------------CCCCCHHHHHH-HHHHHhhc----cccCCcEEEEECchhhcCHHHHHHHHHHhcC--
Confidence 55544210 11122222222 22222211 1224678999999999988778889999985
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRA 685 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~a 685 (842)
+...++||+++|. ++.+++.++||+ +.+.|++++.+++.++|..++ .+++++++.+++. ..||+|+|
T Consensus 135 -p~~~~~~Il~t~~---~~~l~~ti~SRc--~~~~~~~~~~~~~~~~L~~~~----~~~~~~~~~l~~~---s~G~~r~a 201 (334)
T 1a5t_A 135 -PPAETWFFLATRE---PERLLATLRSRC--RLHYLAPPPEQYAVTWLSREV----TMSQDALLAALRL---SAGSPGAA 201 (334)
T ss_dssp -CCTTEEEEEEESC---GGGSCHHHHTTS--EEEECCCCCHHHHHHHHHHHC----CCCHHHHHHHHHH---TTTCHHHH
T ss_pred -CCCCeEEEEEeCC---hHhCcHHHhhcc--eeeeCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHH---cCCCHHHH
Confidence 3567888888887 578999999999 469999999999999999886 5678888776655 48999999
Q ss_pred HHHHHHHH
Q 003175 686 LEICRRAA 693 (842)
Q Consensus 686 l~ll~~A~ 693 (842)
++++..+.
T Consensus 202 ~~~l~~~~ 209 (334)
T 1a5t_A 202 LALFQGDN 209 (334)
T ss_dssp HHTTSSHH
T ss_pred HHHhccch
Confidence 99887655
No 60
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.57 E-value=1.5e-14 Score=161.01 Aligned_cols=243 Identities=15% Similarity=0.147 Sum_probs=153.4
Q ss_pred HHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcC------------------------CcccCCeEEEEcCCCChHH
Q 003175 446 LERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCD------------------------DQCLGRCLYIHGVPGTGKT 501 (842)
Q Consensus 446 ~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~------------------------~~~~~~~ili~GppGtGKT 501 (842)
.....+.|. ..++|.+...+.|...+...... ......++||+||||||||
T Consensus 12 ~~~l~~~L~-----~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT 86 (376)
T 1um8_A 12 PKELKAVLD-----NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKT 86 (376)
T ss_dssp HHHHHHHHH-----TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHH
T ss_pred HHHHHHHHh-----hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHH
Confidence 445556665 34679999999998877321110 1113578999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEE
Q 003175 502 MSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCIL 581 (842)
Q Consensus 502 ~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~Il 581 (842)
++++++++.+. ..++.++|..+.... +.|... ...+...+...... -....+.||
T Consensus 87 ~la~~la~~l~----------~~~~~~~~~~~~~~~---------~~g~~~-----~~~~~~~~~~~~~~-~~~~~~~vl 141 (376)
T 1um8_A 87 LMAQTLAKHLD----------IPIAISDATSLTEAG---------YVGEDV-----ENILTRLLQASDWN-VQKAQKGIV 141 (376)
T ss_dssp HHHHHHHHHTT----------CCEEEEEGGGCC-----------------C-----THHHHHHHHHTTTC-HHHHTTSEE
T ss_pred HHHHHHHHHhC----------CCEEEecchhhhhcC---------cCCccH-----HHHHHHHHhhccch-hhhcCCeEE
Confidence 99999999884 458999998865321 111110 01122222111000 000145799
Q ss_pred EEecCcccccC--------------ChHHHHHhhcCCC------------------CCCCcEEEEEEeCCCC--------
Q 003175 582 LIDELDLLVTR--------------NQSVLYNILDWPT------------------KPNSKLIVIGIANTMD-------- 621 (842)
Q Consensus 582 ilDEid~L~~~--------------~~~~L~~ll~~~~------------------~~~~~vivI~~tn~~d-------- 621 (842)
||||+|.+... .++.|+.+++... ...+++++|+++|..+
T Consensus 142 ~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R 221 (376)
T 1um8_A 142 FIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKR 221 (376)
T ss_dssp EEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTS
T ss_pred EEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHH
Confidence 99999999876 5788999998431 0124567888876211
Q ss_pred -------C-----------------------ccccchhhhccCCceeEEecCCCHHHHHHHHHH-----------Hhc--
Q 003175 622 -------L-----------------------PEKLLPRISSRMGVQRLCFGPYNHQQLQEIISS-----------RLK-- 658 (842)
Q Consensus 622 -------l-----------------------~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~-----------~l~-- 658 (842)
+ ...+.+.+.+||. ..+.|+|++.+++.+|+.. ++.
T Consensus 222 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~-~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~ 300 (376)
T 1um8_A 222 TTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLP-VLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMD 300 (376)
T ss_dssp CSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCC-EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTT
T ss_pred hcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCC-ceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 0 1135688899998 5799999999999999973 111
Q ss_pred Cc-ccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHH
Q 003175 659 GI-EAFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAI 726 (842)
Q Consensus 659 ~~-~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~ 726 (842)
+. -.+++++++++++......|++|.+.+++.+++..+..+.... ..+...|+.++|.++.
T Consensus 301 ~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~-------~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 301 EVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKL-------KGSEVRITKDCVLKQA 362 (376)
T ss_dssp TCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGG-------TTSEEEECHHHHTTSS
T ss_pred CceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCC-------CCCEEEEeHHHhcCCC
Confidence 11 2588999999888764445999999999999988766543110 1123468888887644
No 61
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.55 E-value=2.6e-15 Score=161.71 Aligned_cols=210 Identities=17% Similarity=0.212 Sum_probs=145.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++|+...+.++...+..+... ..++||+|+||||||++++++++..... ..+|+++||..+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~----~~~vLi~Ge~GtGKt~lAr~i~~~~~~~-------~~~~v~v~~~~~~~---- 66 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPS----DATVLIHGDSGTGKELVARALHACSARS-------DRPLVTLNCAALNE---- 66 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCST----TSCEEEESCTTSCHHHHHHHHHHHSSCS-------SSCCCEEECSSCCH----
T ss_pred CCcEECCHHHHHHHHHHHHHhCC----CCcEEEECCCCchHHHHHHHHHHhCccc-------CCCeEEEeCCCCCh----
Confidence 35789999999999999887543 5789999999999999999998875421 14589999998653
Q ss_pred HHHHHHHHhCCCCC-HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------CCCc
Q 003175 540 YRVIYEALSGHRVS-WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--------PNSK 610 (842)
Q Consensus 540 ~~~i~~~l~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--------~~~~ 610 (842)
..+...++|+..+ +..........|..+ ...+|||||+|.|....|..|+.+++.... ....
T Consensus 67 -~l~~~~lfg~~~g~~tg~~~~~~g~~~~a--------~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 67 -SLLESELFGHEKGAFTGADKRREGRFVEA--------DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp -HHHHHHHTCCCSSCCC---CCCCCHHHHH--------TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred -HHHHHHhcCccccccCchhhhhcCHHHhc--------CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCC
Confidence 2334455554321 111100000111111 236899999999988778888888874321 1245
Q ss_pred EEEEEEeCCCCCc-----cccchhhhccCCceeEEecCCC--HHHHHHHHHHHhcCc--------ccCcHHHHHHHHHHH
Q 003175 611 LIVIGIANTMDLP-----EKLLPRISSRMGVQRLCFGPYN--HQQLQEIISSRLKGI--------EAFEKQAIEFASRKV 675 (842)
Q Consensus 611 vivI~~tn~~dl~-----~~l~~~l~sR~~~~~i~f~p~~--~~e~~~Il~~~l~~~--------~~~~~~~l~~ia~~~ 675 (842)
+.||++||.. +. ..+.+.+.+||....|.+||+. .+++..++.+.+... ..+++++++.+...
T Consensus 138 ~riI~atn~~-l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~- 215 (304)
T 1ojl_A 138 VRLIAATHRD-LAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY- 215 (304)
T ss_dssp CEEEEEESSC-HHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC-
T ss_pred eEEEEecCcc-HHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC-
Confidence 7889899863 11 1356778889876778899998 578888877766432 36888888887654
Q ss_pred HHHhcCHHHHHHHHHHHHHHH
Q 003175 676 AAISGDARRALEICRRAAEIA 696 (842)
Q Consensus 676 ~~~~Gd~R~al~ll~~A~~~A 696 (842)
...||+|.+.+++++++..+
T Consensus 216 -~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 216 -DWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp -CCSSHHHHHHHHHHHHHHHC
T ss_pred -CCCCCHHHHHHHHHHHHHhC
Confidence 24799999999999988765
No 62
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.55 E-value=4.1e-15 Score=157.10 Aligned_cols=212 Identities=15% Similarity=0.147 Sum_probs=139.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHH
Q 003175 459 PKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPEN 538 (842)
Q Consensus 459 p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~ 538 (842)
.+.++|++..+..+...+..+... +.+++|+|+||||||++++++++.+... ...++++||..+...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~----~~~vll~G~~GtGKt~la~~i~~~~~~~-------~~~~~~v~~~~~~~~-- 71 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPL----DKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNEN-- 71 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTS----CSCEEEECCTTSCHHHHHHHHHHTSTTT-------TSCEEEEEGGGSCHH--
T ss_pred cccceeCCHHHHHHHHHHHHHhCC----CCCEEEECCCCCcHHHHHHHHHHhcCcc-------CCCeEEEecCCCChh--
Confidence 356789999999999888876543 4789999999999999999999876532 146999999987532
Q ss_pred HHHHHHHHHhCCCCC-HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC--------CCCC
Q 003175 539 IYRVIYEALSGHRVS-WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT--------KPNS 609 (842)
Q Consensus 539 ~~~~i~~~l~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~--------~~~~ 609 (842)
.+...+.|...+ +..........|..+ ...+|||||+|.+....|..|+.+++... ....
T Consensus 72 ---~~~~~l~g~~~~~~~g~~~~~~~~l~~a--------~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 140 (265)
T 2bjv_A 72 ---LLDSELFGHEAGAFTGAQKRHPGRFERA--------DGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQV 140 (265)
T ss_dssp ---HHHHHHHCCC---------CCCCHHHHT--------TTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEEC
T ss_pred ---HHHHHhcCCcccccccccccccchhhhc--------CCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccC
Confidence 222334443211 111100000111111 24699999999998877888888887321 1124
Q ss_pred cEEEEEEeCCC--CC--ccccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcC----c-----ccCcHHHHHHHHHH
Q 003175 610 KLIVIGIANTM--DL--PEKLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKG----I-----EAFEKQAIEFASRK 674 (842)
Q Consensus 610 ~vivI~~tn~~--dl--~~~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~----~-----~~~~~~~l~~ia~~ 674 (842)
.+.||+++|.. ++ ...+.+.+.+||....|.+||+.. +++..++.+.+.. . ..+++++++.+...
T Consensus 141 ~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~ 220 (265)
T 2bjv_A 141 NVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNY 220 (265)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHS
T ss_pred CeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhC
Confidence 57888899863 01 113568889999756789999976 7777777666542 1 25788888876543
Q ss_pred HHHHhcCHHHHHHHHHHHHHHH
Q 003175 675 VAAISGDARRALEICRRAAEIA 696 (842)
Q Consensus 675 ~~~~~Gd~R~al~ll~~A~~~A 696 (842)
.+.||+|...+++++++..+
T Consensus 221 --~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 221 --RWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp --CCTTHHHHHHHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHhC
Confidence 34799999999999988665
No 63
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.55 E-value=5.5e-14 Score=150.61 Aligned_cols=159 Identities=21% Similarity=0.264 Sum_probs=100.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
.+.++||+||||||||+++++++++++ ..+++++|..+.+.. . ......+...|
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~----------~~~i~v~~~~l~~~~--------------~--g~~~~~i~~~f 88 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG----------INPIMMSAGELESGN--------------A--GEPAKLIRQRY 88 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT----------CCCEEEEHHHHHCC-------------------HHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC----------CCEEEEeHHHhhhcc--------------C--chhHHHHHHHH
Confidence 367899999999999999999999995 568999987654320 0 12223344444
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCCh-------------HHHHHhhcCCC----------CCCCcEEEEEEeCCCCC
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRNQ-------------SVLYNILDWPT----------KPNSKLIVIGIANTMDL 622 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~~-------------~~L~~ll~~~~----------~~~~~vivI~~tn~~dl 622 (842)
..+.... ....++||||||+|.+..+.. ..|+++++... ....+++||++||.+
T Consensus 89 ~~a~~~~-~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~-- 165 (293)
T 3t15_A 89 REAAEII-RKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDF-- 165 (293)
T ss_dssp HHHHHHH-TTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSC--
T ss_pred HHHHHHH-hcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCc--
Confidence 4331000 124689999999999887332 66788876322 235679999999985
Q ss_pred ccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcC
Q 003175 623 PEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGD 681 (842)
Q Consensus 623 ~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd 681 (842)
+.+++.+.+ ||. ..|.+ ++.+++.+|++..+... .++ .+.+++.+.+++|.
T Consensus 166 -~~ld~al~R~~R~d-~~i~~--P~~~~r~~Il~~~~~~~-~~~---~~~l~~~~~~~~~~ 218 (293)
T 3t15_A 166 -STLYAPLIRDGRME-KFYWA--PTREDRIGVCTGIFRTD-NVP---AEDVVKIVDNFPGQ 218 (293)
T ss_dssp -CC--CHHHHHHHEE-EEEEC--CCHHHHHHHHHHHHGGG-CCC---HHHHHHHHHHSCSC
T ss_pred -ccCCHHHhCCCCCc-eeEeC--cCHHHHHHHHHHhccCC-CCC---HHHHHHHhCCCCcc
Confidence 567777774 775 33443 49999999999887642 233 34455566666663
No 64
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.54 E-value=5.1e-14 Score=155.80 Aligned_cols=212 Identities=17% Similarity=0.218 Sum_probs=142.0
Q ss_pred CCCcHHHHHHHHHHHHHhhcC---------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 462 LPCRNKEMEDITAFIKGATCD---------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~---------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
++|.+..++.|...+...... ....+.+++|+||||||||++++++++.+. .+|+.++|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~----------~~~~~~~~~~ 86 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD----------VPFTMADATT 86 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT----------CCEEEEEHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC----------CCEEEechHH
Confidence 679999999998888533211 111367899999999999999999999885 5699999987
Q ss_pred CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC--------------ChHHHH
Q 003175 533 LASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR--------------NQSVLY 598 (842)
Q Consensus 533 ~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~--------------~~~~L~ 598 (842)
+..... + |. .....+...|...... -....+.||||||+|.+... -++.|+
T Consensus 87 l~~~~~----~-----g~-----~~~~~~~~~~~~~~~~-~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll 151 (363)
T 3hws_A 87 LTEAGY----V-----GE-----DVENIIQKLLQKCDYD-VQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALL 151 (363)
T ss_dssp HTTCHH----H-----HH-----HHTHHHHHHHHHTTTC-HHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHH
T ss_pred hccccc----c-----cc-----cHHHHHHHHHHHhhhh-HHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHH
Confidence 654311 0 10 0112222333221000 00124689999999999876 478888
Q ss_pred HhhcCC------------------CCCCCcEEEEEEeCCCCCc-------------------------------------
Q 003175 599 NILDWP------------------TKPNSKLIVIGIANTMDLP------------------------------------- 623 (842)
Q Consensus 599 ~ll~~~------------------~~~~~~vivI~~tn~~dl~------------------------------------- 623 (842)
.+++.. ....++++||+++|..++.
T Consensus 152 ~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~ 231 (363)
T 3hws_A 152 KLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEP 231 (363)
T ss_dssp HHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCH
T ss_pred HHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCH
Confidence 888821 0123445666666632110
Q ss_pred cc-----cchhhhccCCceeEEecCCCHHHHHHHHHH----Hhc---------Cc-ccCcHHHHHHHHHHHHHHhcCHHH
Q 003175 624 EK-----LLPRISSRMGVQRLCFGPYNHQQLQEIISS----RLK---------GI-EAFEKQAIEFASRKVAAISGDARR 684 (842)
Q Consensus 624 ~~-----l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~----~l~---------~~-~~~~~~~l~~ia~~~~~~~Gd~R~ 684 (842)
.. +.+.+.+||. ..+.|.|++.+++.+|+.. .+. +. -.+++++++.+++......|++|.
T Consensus 232 ~~l~~~~~~~~l~~R~~-~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~ 310 (363)
T 3hws_A 232 EDLIKFGLIPEFIGRLP-VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARG 310 (363)
T ss_dssp HHHHHHTCCHHHHTTCC-EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTT
T ss_pred HHHHHcCCCHHHhcccC-eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchH
Confidence 00 6788899998 5788999999999999986 211 11 157899999998876666778898
Q ss_pred HHHHHHHHHHHHHHH
Q 003175 685 ALEICRRAAEIADYR 699 (842)
Q Consensus 685 al~ll~~A~~~A~~~ 699 (842)
.-+++.+++..+..+
T Consensus 311 L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 311 LRSIVEAALLDTMYD 325 (363)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888776654
No 65
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.52 E-value=1.5e-13 Score=150.99 Aligned_cols=139 Identities=19% Similarity=0.228 Sum_probs=106.0
Q ss_pred cEEEEEecCcccccCChHHHHHhhcCC----C-CC-----CCcEEEEEEeCCCCCccccchhhhccCCceeEEecCC-CH
Q 003175 578 PCILLIDELDLLVTRNQSVLYNILDWP----T-KP-----NSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPY-NH 646 (842)
Q Consensus 578 ~~IlilDEid~L~~~~~~~L~~ll~~~----~-~~-----~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~-~~ 646 (842)
..||||||+|.+....++.|+.+++.. . .. ..+++||+++|..+ ..+++.+.+||. ..+.|+++ +.
T Consensus 145 ~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~--~~l~~~L~~R~~-~~~~l~~~~~~ 221 (350)
T 1g8p_A 145 RGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE--GDLRPQLLDRFG-LSVEVLSPRDV 221 (350)
T ss_dssp TEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS--CCCCHHHHTTCS-EEEECCCCCSH
T ss_pred CCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCC--CCCCHHHHhhcc-eEEEcCCCCcH
Confidence 579999999999888788888888632 0 11 13789999999632 368899999997 47889888 56
Q ss_pred HHHHHHHHHHhc-----------------------------C-cccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Q 003175 647 QQLQEIISSRLK-----------------------------G-IEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEI 695 (842)
Q Consensus 647 ~e~~~Il~~~l~-----------------------------~-~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~ 695 (842)
++..+|+..++. . ...+++++++++++......+ ++|.++++|+.|...
T Consensus 222 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~ 301 (350)
T 1g8p_A 222 ETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARAL 301 (350)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 677688866321 0 016889999999888766555 799999999999998
Q ss_pred HHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhC
Q 003175 696 ADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQA 732 (842)
Q Consensus 696 A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~ 732 (842)
|..+ +...|+.+||.+|+..+...
T Consensus 302 A~~~-------------~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 302 AALE-------------GATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp HHHT-------------TCSBCCHHHHHHHHHHHHGG
T ss_pred HHHc-------------CCCcCCHHHHHHHHHHHHhh
Confidence 8755 34679999999999876543
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.52 E-value=4.1e-14 Score=171.84 Aligned_cols=232 Identities=14% Similarity=0.174 Sum_probs=163.6
Q ss_pred ccccCcccHHHHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCC---cccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 437 HVRCHKQTELERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDD---QCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 437 ~~~~~~~~~~~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~---~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
.+.+.+...+...++.|. ..++|.+..++.|...+.....+. ..+..++||+||||||||++++++++.+.
T Consensus 440 ~~~~~~~~~l~~l~~~l~-----~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~- 513 (758)
T 1r6b_X 440 SVSQSDRDTLKNLGDRLK-----MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG- 513 (758)
T ss_dssp CSSSSHHHHHHHHHHHHT-----TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-
T ss_pred ccchhHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-
Confidence 445666666777777776 457799999999999888765432 11235799999999999999999999884
Q ss_pred HhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHH--HHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 514 EVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKK--ALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 514 ~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~--~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
..++.++|..+...+.+ ..+.|...++.. ....+.+.+... .+.||||||+|.+..
T Consensus 514 ---------~~~~~i~~s~~~~~~~~-----~~l~g~~~g~~g~~~~~~l~~~~~~~--------~~~vl~lDEi~~~~~ 571 (758)
T 1r6b_X 514 ---------IELLRFDMSEYMERHTV-----SRLIGAPPGYVGFDQGGLLTDAVIKH--------PHAVLLLDEIEKAHP 571 (758)
T ss_dssp ---------CEEEEEEGGGCSSSSCC-----SSSCCCCSCSHHHHHTTHHHHHHHHC--------SSEEEEEETGGGSCH
T ss_pred ---------CCEEEEechhhcchhhH-----hhhcCCCCCCcCccccchHHHHHHhC--------CCcEEEEeCccccCH
Confidence 46999999987653111 112233222211 112233333322 468999999999988
Q ss_pred CChHHHHHhhcCCCCC--------CCcEEEEEEeCCCC--C--------------------ccccchhhhccCCceeEEe
Q 003175 592 RNQSVLYNILDWPTKP--------NSKLIVIGIANTMD--L--------------------PEKLLPRISSRMGVQRLCF 641 (842)
Q Consensus 592 ~~~~~L~~ll~~~~~~--------~~~vivI~~tn~~d--l--------------------~~~l~~~l~sR~~~~~i~f 641 (842)
..++.|+++++..... -.+++||+++|... + ...+.+.+.+||. ..|.|
T Consensus 572 ~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~-~~i~~ 650 (758)
T 1r6b_X 572 DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLD-NIIWF 650 (758)
T ss_dssp HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCS-EEEEC
T ss_pred HHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCC-cceee
Confidence 7788999999743110 14688999999631 0 1267889999998 46999
Q ss_pred cCCCHHHHHHHHHHHhcCc----------ccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 003175 642 GPYNHQQLQEIISSRLKGI----------EAFEKQAIEFASRKVAAISGDARRALEICRRAAEIAD 697 (842)
Q Consensus 642 ~p~~~~e~~~Il~~~l~~~----------~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~ 697 (842)
+|++.+++..|+..++... -.+++++++++++......+++|.+..++++++..+.
T Consensus 651 ~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l 716 (758)
T 1r6b_X 651 DHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPL 716 (758)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHH
Confidence 9999999999999988632 1578999999887653334558888888888887543
No 67
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.49 E-value=1.2e-13 Score=137.19 Aligned_cols=164 Identities=16% Similarity=0.195 Sum_probs=108.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHH
Q 003175 459 PKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPEN 538 (842)
Q Consensus 459 p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~ 538 (842)
.+.++||+++++++...+.. + .+.+++|+|+||||||++++.+++.+.............++++++..+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~----~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 91 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQR----R--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA--- 91 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTS----S--SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT---
T ss_pred ccccccchHHHHHHHHHHhc----C--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhc---
Confidence 35689999999999888754 2 25789999999999999999999998752111111125688888754321
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC--------ChHHHHHhhcCCCCCCCc
Q 003175 539 IYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR--------NQSVLYNILDWPTKPNSK 610 (842)
Q Consensus 539 ~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~--------~~~~L~~ll~~~~~~~~~ 610 (842)
+.. ........+...+..... ...+.||||||+|.+... .++.|..+++ ..+
T Consensus 92 ----------~~~-~~~~~~~~~~~~~~~~~~----~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-----~~~ 151 (195)
T 1jbk_A 92 ----------GAK-YRGEFEERLKGVLNDLAK----QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-----RGE 151 (195)
T ss_dssp ----------TTC-SHHHHHHHHHHHHHHHHH----STTTEEEEEETGGGGTT------CCCCHHHHHHHHH-----TTS
T ss_pred ----------cCC-ccccHHHHHHHHHHHHhh----cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-----cCC
Confidence 100 111122223333322111 135789999999999632 2566777765 345
Q ss_pred EEEEEEeCCCCCcc--ccchhhhccCCceeEEecCCCHHHHHHHH
Q 003175 611 LIVIGIANTMDLPE--KLLPRISSRMGVQRLCFGPYNHQQLQEII 653 (842)
Q Consensus 611 vivI~~tn~~dl~~--~l~~~l~sR~~~~~i~f~p~~~~e~~~Il 653 (842)
+.+|+++|..++.. .+++++.+||. .|.|++|+.+++.+||
T Consensus 152 ~~~i~~~~~~~~~~~~~~~~~l~~r~~--~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 152 LHCVGATTLDEYRQYIEKDAALERRFQ--KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CCEEEEECHHHHHHHTTTCHHHHTTEE--EEECCCCCHHHHHTTC
T ss_pred eEEEEeCCHHHHHHHHhcCHHHHHHhc--eeecCCCCHHHHHHHh
Confidence 77888888642211 45789999996 5999999999998876
No 68
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.48 E-value=2.9e-13 Score=154.51 Aligned_cols=199 Identities=16% Similarity=0.178 Sum_probs=132.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++||+++++++...+.. . ..+++||+||||||||++++.+++.+........+....++.+++..
T Consensus 180 d~iiGr~~~i~~l~~~l~r----~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~------- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSR----R--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT------- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHC----S--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhc----c--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-------
Confidence 4589999999999888865 2 25789999999999999999999998642111111245688888761
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
...|.. ...+..+|..... ..+.||||| .....++.|..++ ....+.||+++|.
T Consensus 247 ------~~~g~~------e~~~~~~~~~~~~-----~~~~iLfiD----~~~~a~~~L~~~L-----~~g~v~vI~at~~ 300 (468)
T 3pxg_A 247 ------KYRGEF------EDRLKKVMDEIRQ-----AGNIILFID----AAIDASNILKPSL-----ARGELQCIGATTL 300 (468)
T ss_dssp ------------------CTTHHHHHHHHHT-----CCCCEEEEC----C--------CCCT-----TSSSCEEEEECCT
T ss_pred ------cccchH------HHHHHHHHHHHHh-----cCCeEEEEe----CchhHHHHHHHhh-----cCCCEEEEecCCH
Confidence 001110 0112222222211 256899999 1112233343333 3557999999987
Q ss_pred CCCcc--ccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc----c-cCcHHHHHHHHHHHHHHhcC---HHHHHHHH
Q 003175 620 MDLPE--KLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI----E-AFEKQAIEFASRKVAAISGD---ARRALEIC 689 (842)
Q Consensus 620 ~dl~~--~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~----~-~~~~~~l~~ia~~~~~~~Gd---~R~al~ll 689 (842)
.++.. .+++.+.+||. .|.|++|+.+++.+||...+... + .+++++++.++.....+.++ .+++++++
T Consensus 301 ~e~~~~~~~~~al~~Rf~--~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll 378 (468)
T 3pxg_A 301 DEYRKYIEKDAALERRFQ--PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (468)
T ss_dssp TTTHHHHTTCSHHHHSEE--EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred HHHHHHhhcCHHHHHhCc--cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHH
Confidence 54321 46789999995 59999999999999999887653 2 68899999999988777666 67899999
Q ss_pred HHHHHHHHHH
Q 003175 690 RRAAEIADYR 699 (842)
Q Consensus 690 ~~A~~~A~~~ 699 (842)
..|...+..+
T Consensus 379 ~~a~~~~~~~ 388 (468)
T 3pxg_A 379 DEAGSKVRLR 388 (468)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9988766544
No 69
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.48 E-value=1.6e-14 Score=114.70 Aligned_cols=53 Identities=45% Similarity=1.151 Sum_probs=47.8
Q ss_pred cccccccceeecccccccccCccCCCccccccCCCCCCCCCCCCccccccccccc
Q 003175 185 DPEVEECRICFRAGRSVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARKL 239 (842)
Q Consensus 185 ~~~~~~C~~C~~~~~~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 239 (842)
+.+..+|.+|+.+++ ||+||.|+.+||++|++|||..+|+++|+|+.|..+..
T Consensus 6 d~~~~~C~vC~~~g~--ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGE--LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCSSCTTTCCCSS--CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred cCCCCcCCCCCCCCC--EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 455678999998776 99999999999999999999999999999999987654
No 70
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=8e-13 Score=141.82 Aligned_cols=171 Identities=12% Similarity=0.107 Sum_probs=119.2
Q ss_pred HHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc-CCChHHHHHHHHHHHhCCCC
Q 003175 474 AFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK-LASPENIYRVIYEALSGHRV 552 (842)
Q Consensus 474 ~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~-~~s~~~~~~~i~~~l~g~~~ 552 (842)
..|...+..+. .++++|+||||+|||++++++++.+... ... ...++++++.. ...
T Consensus 7 ~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~--~~~--~~d~~~l~~~~~~~~----------------- 63 (305)
T 2gno_A 7 ETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKF--PPK--ASDVLEIDPEGENIG----------------- 63 (305)
T ss_dssp HHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTS--CCC--TTTEEEECCSSSCBC-----------------
T ss_pred HHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchh--hcc--CCCEEEEcCCcCCCC-----------------
Confidence 34444455554 5789999999999999999999875311 111 13477887653 111
Q ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhc
Q 003175 553 SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISS 632 (842)
Q Consensus 553 ~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s 632 (842)
.++..+.+. .+... ...+...|+||||+|.|....++.|+..++.+ ....+||++++. +..+.+.++|
T Consensus 64 -id~ir~li~-~~~~~----p~~~~~kvviIdead~lt~~a~naLLk~LEep---~~~t~fIl~t~~---~~kl~~tI~S 131 (305)
T 2gno_A 64 -IDDIRTIKD-FLNYS----PELYTRKYVIVHDCERMTQQAANAFLKALEEP---PEYAVIVLNTRR---WHYLLPTIKS 131 (305)
T ss_dssp -HHHHHHHHH-HHTSC----CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSC---CTTEEEEEEESC---GGGSCHHHHT
T ss_pred -HHHHHHHHH-HHhhc----cccCCceEEEeccHHHhCHHHHHHHHHHHhCC---CCCeEEEEEECC---hHhChHHHHc
Confidence 222222222 22111 11235689999999999888889999999854 557777778876 5789999999
Q ss_pred cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003175 633 RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDARRALEICRRAAE 694 (842)
Q Consensus 633 R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~ 694 (842)
| .+.|++++.+++.++|..++ .++++++.+ ..||+|.|+++++....
T Consensus 132 R----~~~f~~l~~~~i~~~L~~~~----~i~~~~~~~-------~~g~~~~al~~l~~~~~ 178 (305)
T 2gno_A 132 R----VFRVVVNVPKEFRDLVKEKI----GDLWEELPL-------LERDFKTALEAYKLGAE 178 (305)
T ss_dssp T----SEEEECCCCHHHHHHHHHHH----TTHHHHCGG-------GGTCHHHHHHHHHHHHH
T ss_pred e----eEeCCCCCHHHHHHHHHHHh----CCCHHHHHH-------HCCCHHHHHHHHHHHHH
Confidence 9 49999999999999999887 255655522 48999999998865443
No 71
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.9e-14 Score=124.16 Aligned_cols=57 Identities=33% Similarity=0.784 Sum_probs=50.2
Q ss_pred ccccccccceeecccc-cccccCccCCCccccccCCCCCCCCCCCCcccccccccccC
Q 003175 184 EDPEVEECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARKLG 240 (842)
Q Consensus 184 ~~~~~~~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~ 240 (842)
...+...|.+|+.+++ +.||+||.|+.+||+.|++|||..+|.++|+|+.|......
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~~ 69 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECK 69 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHHHS
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcccc
Confidence 3445668999999876 78999999999999999999999999999999999876543
No 72
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=5.9e-13 Score=146.61 Aligned_cols=202 Identities=15% Similarity=0.187 Sum_probs=130.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCC-------------------
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSI------------------- 520 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~------------------- 520 (842)
+.++|++..++.+..++. ..+. .++ ++|+||+|+|||++++.+++.+..... +.+
T Consensus 14 ~~~vg~~~~~~~l~~~~~---~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~-g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSD---QPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGV-YRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTT---CTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTC-CC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHh---hCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCC-CeEEecceeecccccccceeee
Confidence 347788877766655441 3333 234 999999999999999999997643211 100
Q ss_pred -CCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCC-----CC-CCCcEEEEEecCcccccCC
Q 003175 521 -RPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIG-----KE-DDRPCILLIDELDLLVTRN 593 (842)
Q Consensus 521 -~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~-----~~-~~~~~IlilDEid~L~~~~ 593 (842)
+...++++++....... .....+.+.... ....+. .. ...+.||||||++.|....
T Consensus 88 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~~~~-~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~ 150 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNND----------------RIVIQELLKEVA-QMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA 150 (354)
T ss_dssp EECSSEEEECCC----CC----------------HHHHHHHHHHHT-TTTC------------CCEEEEEECTTSSCHHH
T ss_pred ecccceEEecHhhcCCcc----------------hHHHHHHHHHHH-HhccccccccccccCCCCeEEEEeCccccCHHH
Confidence 00113344432211000 000111111111 110000 00 2367899999999987777
Q ss_pred hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCcc-cCc-HHHHHHH
Q 003175 594 QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGIE-AFE-KQAIEFA 671 (842)
Q Consensus 594 ~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~~-~~~-~~~l~~i 671 (842)
++.|+.+++.+ .....||.+++.+ ..+.+.+.||+ ..+.|+|++.+++.++|...+...+ .++ +++++.+
T Consensus 151 ~~~L~~~le~~---~~~~~~Il~t~~~---~~l~~~l~sR~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i 222 (354)
T 1sxj_E 151 QAALRRTMEKY---SKNIRLIMVCDSM---SPIIAPIKSQC--LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRI 222 (354)
T ss_dssp HHHHHHHHHHS---TTTEEEEEEESCS---CSSCHHHHTTS--EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHH
T ss_pred HHHHHHHHHhh---cCCCEEEEEeCCH---HHHHHHHHhhc--eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Confidence 88899988754 2356777788874 56788999999 5799999999999999999886544 467 8888887
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Q 003175 672 SRKVAAISGDARRALEICRRAAEI 695 (842)
Q Consensus 672 a~~~~~~~Gd~R~al~ll~~A~~~ 695 (842)
++. ..||+|+++++++.+...
T Consensus 223 ~~~---~~G~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 223 AQA---SNGNLRVSLLMLESMALN 243 (354)
T ss_dssp HHH---HTTCHHHHHHHHTHHHHT
T ss_pred HHH---cCCCHHHHHHHHHHHHHh
Confidence 765 489999999999988754
No 73
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.46 E-value=8.4e-12 Score=136.68 Aligned_cols=281 Identities=14% Similarity=0.108 Sum_probs=161.2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCC--
Q 003175 457 TLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLA-- 534 (842)
Q Consensus 457 ~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~-- 534 (842)
..|..++||+.+++.|...+.. ++.++|+|++|+|||+|++.+++.+. +++++|....
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~--------~~~v~i~G~~G~GKT~Ll~~~~~~~~------------~~~~~~~~~~~~ 68 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN--------YPLTLLLGIRRVGKSSLLRAFLNERP------------GILIDCRELYAE 68 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH--------CSEEEEECCTTSSHHHHHHHHHHHSS------------EEEEEHHHHHHT
T ss_pred CChHhcCChHHHHHHHHHHHhc--------CCeEEEECCCcCCHHHHHHHHHHHcC------------cEEEEeeccccc
Confidence 3556799999999999998875 36899999999999999999987641 6788886543
Q ss_pred ----ChHHHHHHHHHHHhC----------------CC-----CCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccc
Q 003175 535 ----SPENIYRVIYEALSG----------------HR-----VSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLL 589 (842)
Q Consensus 535 ----s~~~~~~~i~~~l~g----------------~~-----~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L 589 (842)
+...++..+...+.. .. ..+......+.+.... ..+.+|||||+|.+
T Consensus 69 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~vlvlDe~~~~ 140 (350)
T 2qen_A 69 RGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEE--------LGEFIVAFDEAQYL 140 (350)
T ss_dssp TTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHH--------HSCEEEEEETGGGG
T ss_pred ccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhc--------cCCEEEEEeCHHHH
Confidence 555666666655422 01 1233333333332211 13689999999999
Q ss_pred cc----CCh---HHHHHhhcCCCCCCCcEEEEEEeCCCCCcccc------chhhhccCCceeEEecCCCHHHHHHHHHHH
Q 003175 590 VT----RNQ---SVLYNILDWPTKPNSKLIVIGIANTMDLPEKL------LPRISSRMGVQRLCFGPYNHQQLQEIISSR 656 (842)
Q Consensus 590 ~~----~~~---~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l------~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~ 656 (842)
.. ... ..|..+++.. .++.||.++....+...+ ...+..|.. ..+.+.|++.++..+++...
T Consensus 141 ~~~~~~~~~~~~~~L~~~~~~~----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~-~~i~l~pl~~~e~~~~l~~~ 215 (350)
T 2qen_A 141 RFYGSRGGKELLALFAYAYDSL----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIA-GEVLVKPFDKDTSVEFLKRG 215 (350)
T ss_dssp GGBTTTTTHHHHHHHHHHHHHC----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCC-EEEECCCCCHHHHHHHHHHH
T ss_pred hccCccchhhHHHHHHHHHHhc----CCeEEEEECCcHHHHHHHHhhcCCCCccccCcc-ceeeCCCCCHHHHHHHHHHH
Confidence 75 222 3344444421 356666565432111111 112333443 57999999999999999988
Q ss_pred hcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhhChHH
Q 003175 657 LKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQAPHI 735 (842)
Q Consensus 657 l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~~~~~ 735 (842)
+...+ .++++.++.+. ....|++..+..++..... .. ....+..+.+..+... + .
T Consensus 216 ~~~~~~~~~~~~~~~i~---~~tgG~P~~l~~~~~~~~~---~~-------------~~~~~~~~~~~~~~~~-~----~ 271 (350)
T 2qen_A 216 FREVNLDVPENEIEEAV---ELLDGIPGWLVVFGVEYLR---NG-------------DFGRAMKRTLEVAKGL-I----M 271 (350)
T ss_dssp HHTTTCCCCHHHHHHHH---HHHTTCHHHHHHHHHHHHH---HC-------------CHHHHHHHHHHHHHHH-H----H
T ss_pred HHHcCCCCCHHHHHHHH---HHhCCCHHHHHHHHHHHhc---cc-------------cHhHHHHHHHHHHHHH-H----H
Confidence 76443 35666555544 4457888754444433211 00 0000111111111111 1 1
Q ss_pred HHHhhC---chHHHHHHHHHHHHHHHcCCcceeHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhcccceEEec
Q 003175 736 QVMKSC---SKLSKIFLTAMVYELYKTGMGETNFEKLAMTVSSLCTSNGEIFPSWDALLRVGCKLGECRIILCE 806 (842)
Q Consensus 736 ~~l~~l---s~~~kliL~a~~~~~~~~g~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~~li~~~ 806 (842)
..+..+ +...+.+|.+++. | ..++.++.+.+.. ..+ ..+...+..++..|...++|...
T Consensus 272 ~~l~~l~~~~~~~~~~l~~la~-----g--~~~~~~l~~~~~~---~~~--~~~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 272 GELEELRRRSPRYVDILRAIAL-----G--YNRWSLIRDYLAV---KGT--KIPEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHT-----T--CCSHHHHHHHHHH---TTC--CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCChhHHHHHHHHHh-----C--CCCHHHHHHHHHH---HhC--CCCHHHHHHHHHHHHhCCCEEec
Confidence 112233 5667777776652 3 2456666554332 111 12456677788889999998764
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.45 E-value=6.6e-13 Score=162.85 Aligned_cols=207 Identities=16% Similarity=0.167 Sum_probs=134.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++||++++.++...+.. + ..++++|+||||||||++++.+++.+........+....++++++..+.....
T Consensus 170 d~viGr~~~i~~l~~~l~~----~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~- 242 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLR----R--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAK- 242 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHC----S--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhc----C--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCc-
Confidence 5589999999999888754 2 25678999999999999999999998652211122246799999866532100
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC--------hHHHHHhhcCCCCCCCcE
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN--------QSVLYNILDWPTKPNSKL 611 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~--------~~~L~~ll~~~~~~~~~v 611 (842)
..| .....+...|..... ...++||||||+|.|.... .+.|..+++ ...+
T Consensus 243 -------~~g------~~~~~l~~~~~~~~~----~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~-----~~~i 300 (854)
T 1qvr_A 243 -------YRG------EFEERLKAVIQEVVQ----SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-----RGEL 300 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHT----TCSSEEEEECCC-------------------HHHHH-----TTCC
T ss_pred -------cch------HHHHHHHHHHHHHHh----cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh-----CCCe
Confidence 001 112233334433321 1357999999999997432 345666664 3467
Q ss_pred EEEEEeCCCCCc-cccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc-----ccCcHHHHHHHHHHHHHHhcC---H
Q 003175 612 IVIGIANTMDLP-EKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI-----EAFEKQAIEFASRKVAAISGD---A 682 (842)
Q Consensus 612 ivI~~tn~~dl~-~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~-----~~~~~~~l~~ia~~~~~~~Gd---~ 682 (842)
.+|+++|..++. -.+++.+.+||.. |.|++|+.+++.+||+..+... ..++++++..+++...++.++ .
T Consensus 301 ~~I~at~~~~~~~~~~d~aL~rRf~~--i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp 378 (854)
T 1qvr_A 301 RLIGATTLDEYREIEKDPALERRFQP--VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLP 378 (854)
T ss_dssp CEEEEECHHHHHHHTTCTTTCSCCCC--EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTH
T ss_pred EEEEecCchHHhhhccCHHHHhCCce--EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccCh
Confidence 788888753211 1357899999974 9999999999999998776532 267899999999988887666 8
Q ss_pred HHHHHHHHHHHHHHH
Q 003175 683 RRALEICRRAAEIAD 697 (842)
Q Consensus 683 R~al~ll~~A~~~A~ 697 (842)
.++++++..|...+.
T Consensus 379 ~kai~lldea~a~~~ 393 (854)
T 1qvr_A 379 DKAIDLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 889999988876654
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.45 E-value=3.6e-13 Score=163.34 Aligned_cols=207 Identities=14% Similarity=0.125 Sum_probs=149.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCc---ccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCCh
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQ---CLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASP 536 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~---~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~ 536 (842)
..++|.+..++.|...+.....+.. .+.+++||+||||||||++++++++.+... ...++++||..+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~-------~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD-------EESMIRIDMSEYMEK 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC-------TTCEEEEEGGGGCSS
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-------CcceEEEechhcccc
Confidence 5688999999999999987654421 112379999999999999999999998532 146999999987764
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------CC
Q 003175 537 ENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--------PN 608 (842)
Q Consensus 537 ~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--------~~ 608 (842)
.... ...+...+.. ..+.||||||||.+....++.|+++++.... ..
T Consensus 564 ~~~~-----------------~~~l~~~~~~--------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~ 618 (758)
T 3pxi_A 564 HSTS-----------------GGQLTEKVRR--------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDF 618 (758)
T ss_dssp CCCC--------------------CHHHHHH--------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBC
T ss_pred cccc-----------------cchhhHHHHh--------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEecc
Confidence 2111 0011112211 1457999999999988888999999975321 23
Q ss_pred CcEEEEEEeCCCCC---------ccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc----------ccCcHHHHH
Q 003175 609 SKLIVIGIANTMDL---------PEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI----------EAFEKQAIE 669 (842)
Q Consensus 609 ~~vivI~~tn~~dl---------~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~----------~~~~~~~l~ 669 (842)
.+++||++||...- ...+.+.+.+||. ..|.|+|++.+++.+|+...+... -.+++++++
T Consensus 619 ~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~-~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~ 697 (758)
T 3pxi_A 619 RNTILIMTSNVGASEKDKVMGELKRAFRPEFINRID-EIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKA 697 (758)
T ss_dssp TTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSS-EEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHH
T ss_pred CCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCC-eEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHH
Confidence 46788999995321 1237789999997 589999999999999999887542 268899999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 003175 670 FASRKVAAISGDARRALEICRRAAEIADYR 699 (842)
Q Consensus 670 ~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~ 699 (842)
++++......|++|..-+++++++..+..+
T Consensus 698 ~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~ 727 (758)
T 3pxi_A 698 KVAEEGVDLEYGARPLRRAIQKHVEDRLSE 727 (758)
T ss_dssp HHHGGGCCTTTTTTTHHHHHHHHTHHHHHH
T ss_pred HHHHhCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 988765556788888888888887766544
No 76
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.44 E-value=4.7e-14 Score=118.73 Aligned_cols=54 Identities=35% Similarity=0.895 Sum_probs=48.6
Q ss_pred CccccccccceeecccccccccCccCCCccccccCCCCCCCCCCCCcccccccccc
Q 003175 183 EEDPEVEECRICFRAGRSVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARK 238 (842)
Q Consensus 183 ~~~~~~~~C~~C~~~~~~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 238 (842)
..+.+..+|.+|+.+|+ ||+||.|+++||++|+.|||..+|+|+|+|+.|....
T Consensus 20 ~~d~n~~~C~vC~~~g~--LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 20 TLDDSATICRVCQKPGD--LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSSSSCCSSSCSSSC--CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred ccCCCCCcCcCcCCCCC--EEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 44556679999999887 9999999999999999999999999999999998654
No 77
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.43 E-value=3e-14 Score=114.38 Aligned_cols=52 Identities=23% Similarity=0.548 Sum_probs=46.5
Q ss_pred cccccccceeecccccccccCccCCCccccccCCCCCCCCCCCCcccccccccc
Q 003175 185 DPEVEECRICFRAGRSVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARK 238 (842)
Q Consensus 185 ~~~~~~C~~C~~~~~~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 238 (842)
..+...|.+|+++++ ||+||.|+++||++|++|+|..+|+++|||+.|....
T Consensus 9 ~~~~~~C~vC~~~~~--ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 9 LAPGARCGVCGDGTD--VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCTTCCCTTTSCCTT--CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCcCCCCCCCe--EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 344567999998777 9999999999999999999999999999999998654
No 78
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.43 E-value=3.5e-12 Score=154.87 Aligned_cols=234 Identities=17% Similarity=0.166 Sum_probs=152.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++||+.+++++.+.+.. . ...+++|+|+||||||++++.+++.+....-........++.+++..+....
T Consensus 186 d~~iGr~~~i~~l~~~l~~----~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~-- 257 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCR----R--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGT-- 257 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTS----S--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCC--
T ss_pred CCccCCHHHHHHHHHHHhc----c--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccc--
Confidence 4589999999998887754 2 2678999999999999999999998864211001112456666654432100
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----hHHHHHhhcCCCCCCCcEEEE
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----QSVLYNILDWPTKPNSKLIVI 614 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----~~~L~~ll~~~~~~~~~vivI 614 (842)
...-.+. ..+...|..... ..+.||||||+|.|.... ...+.+++... .....+.+|
T Consensus 258 ---------~~~g~~e---~~l~~~~~~~~~-----~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~-l~~~~~~~I 319 (758)
T 1r6b_X 258 ---------KYRGDFE---KRFKALLKQLEQ-----DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL-LSSGKIRVI 319 (758)
T ss_dssp ---------CCSSCHH---HHHHHHHHHHSS-----SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSC-SSSCCCEEE
T ss_pred ---------cccchHH---HHHHHHHHHHHh-----cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHH-HhCCCeEEE
Confidence 0011122 233334433321 246999999999996432 33344444422 235678889
Q ss_pred EEeCCCCC--ccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc-----ccCcHHHHHHHHHHHHHHhcC---HHH
Q 003175 615 GIANTMDL--PEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI-----EAFEKQAIEFASRKVAAISGD---ARR 684 (842)
Q Consensus 615 ~~tn~~dl--~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~-----~~~~~~~l~~ia~~~~~~~Gd---~R~ 684 (842)
+++|..++ ...+++++.+||. .|.|++|+.+++.+||...+... ..+++++++.++....++.++ ...
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~--~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~ 397 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQ--KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEE--EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHH
T ss_pred EEeCchHHhhhhhcCHHHHhCce--EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchH
Confidence 89886432 1234678899996 59999999999999999877542 257888999988887766554 457
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHh
Q 003175 685 ALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMF 730 (842)
Q Consensus 685 al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~ 730 (842)
+++++..|...+... ........|+.+||..++....
T Consensus 398 ~i~lld~a~~~~~~~---------~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 398 AIDVIDEAGARARLM---------PVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHHS---------SSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcc---------cccccCCccCHHHHHHHHHHhc
Confidence 888998887654421 0011245789999999988764
No 79
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.42 E-value=3.2e-14 Score=115.05 Aligned_cols=52 Identities=40% Similarity=1.074 Sum_probs=47.3
Q ss_pred ccccccceeecccccccccCccCCCccccccCCCCCCCCCCCCccccccccccc
Q 003175 186 PEVEECRICFRAGRSVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARKL 239 (842)
Q Consensus 186 ~~~~~C~~C~~~~~~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 239 (842)
.++.+|.+|+.+++ ||+||.|+.+||+.|++|||..+|.++|+|+.|..+..
T Consensus 6 ~~~~~C~vC~~~g~--ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 6 KNEDECAVCRDGGE--LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp SCCCSBSSSSCCSS--CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCCccCCCCCC--EEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 45669999998877 99999999999999999999999999999999987654
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=3.7e-14 Score=112.61 Aligned_cols=53 Identities=34% Similarity=1.003 Sum_probs=47.5
Q ss_pred ccccccccceeecccccccccCccCCCccccccCCCCCCCCCCCCcccccccccc
Q 003175 184 EDPEVEECRICFRAGRSVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARK 238 (842)
Q Consensus 184 ~~~~~~~C~~C~~~~~~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 238 (842)
+..+..+|.+|+.+++ ||+||.|+++||+.|++|||..+|+++|+|+.|..++
T Consensus 7 ~~~~~~~C~vC~~~g~--ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~g 59 (61)
T 2l5u_A 7 ETDHQDYCEVCQQGGE--IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG 59 (61)
T ss_dssp SSCCCSSCTTTSCCSS--EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGGS
T ss_pred cCCCCCCCccCCCCCc--EEECCCCChhhhhhccCCCCCCCCCCceECccccccc
Confidence 3445679999998776 9999999999999999999999999999999998764
No 81
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.41 E-value=7.7e-13 Score=150.79 Aligned_cols=224 Identities=16% Similarity=0.148 Sum_probs=146.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
..++|++..++.+...+.. +.++||+||||||||++++++++.+... ..|.++++.- .++.++
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------~~~VLL~GpPGtGKT~LAraLa~~l~~~--------~~f~~~~~~~-~t~~dL 84 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------GESVFLLGPPGIAKSLIARRLKFAFQNA--------RAFEYLMTRF-STPEEV 84 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------TCEEEEECCSSSSHHHHHHHGGGGBSSC--------CEEEEECCTT-CCHHHH
T ss_pred hhhHHHHHHHHHHHHHHhc--------CCeeEeecCchHHHHHHHHHHHHHHhhh--------hHHHHHHHhc-CCHHHh
Confidence 4577999999888777654 5789999999999999999999877421 3467777653 344332
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC--------CCCCcE
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT--------KPNSKL 611 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~--------~~~~~v 611 (842)
+ |........ -...|..... .....+.|||||||+.+....++.|+.+++... ....++
T Consensus 85 ~--------G~~~~~~~~---~~g~~~~~~~--g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~ 151 (500)
T 3nbx_X 85 F--------GPLSIQALK---DEGRYERLTS--GYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRL 151 (500)
T ss_dssp H--------CCBC-------------CBCCT--TSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCE
T ss_pred c--------CcccHHHHh---hchhHHhhhc--cCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhh
Confidence 2 321111000 0111221111 000135699999999988878889999986321 112334
Q ss_pred EEEEEeCCCCCccccchhhhccCCceeEEecCCCH-HHHHHHHHHHhcC------------------------cccCcHH
Q 003175 612 IVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNH-QQLQEIISSRLKG------------------------IEAFEKQ 666 (842)
Q Consensus 612 ivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~-~e~~~Il~~~l~~------------------------~~~~~~~ 666 (842)
+|++||.+.-...+.+.+.+||. ..+.+++++. +++..|+..+... ...++++
T Consensus 152 -iI~ATN~lpe~~~~~~aLldRF~-~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~ 229 (500)
T 3nbx_X 152 -LVAASNELPEADSSLEALYDRML-IRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH 229 (500)
T ss_dssp -EEEEESSCCCTTCTTHHHHTTCC-EEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH
T ss_pred -hhhccccCCCccccHHHHHHHHH-HHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH
Confidence 56677864323345578999995 6888999887 7788888776431 1146778
Q ss_pred HHHHHHHHHHH-------HhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHH
Q 003175 667 AIEFASRKVAA-------ISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEM 729 (842)
Q Consensus 667 ~l~~ia~~~~~-------~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~ 729 (842)
+++++++.+.. ...+.|.++.+++.|...|..+ +...|+.+||. ++..+
T Consensus 230 v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~-------------gr~~Vt~eDv~-~a~~v 285 (500)
T 3nbx_X 230 VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFS-------------GRSAVAPVDLI-LLKDC 285 (500)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHT-------------TCSBCCGGGGG-GGGGT
T ss_pred HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhc-------------CCccccchHHH-HHHhh
Confidence 88888887743 1337899999999888888765 46788999998 44433
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=5.3e-14 Score=109.90 Aligned_cols=50 Identities=40% Similarity=1.101 Sum_probs=45.5
Q ss_pred cccccccceeecccccccccCccCCCccccccCCCCCCCCCCCCcccccccc
Q 003175 185 DPEVEECRICFRAGRSVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEA 236 (842)
Q Consensus 185 ~~~~~~C~~C~~~~~~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 236 (842)
+.+..+|.+|+.+++ ||+||.|+.+||+.|++|||..+|.++|+|+.|..
T Consensus 6 ~~~~~~C~vC~~~g~--ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQ--LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSSC--CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCCe--EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 445668999998876 99999999999999999999999999999999964
No 83
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.41 E-value=3.9e-13 Score=164.82 Aligned_cols=218 Identities=17% Similarity=0.221 Sum_probs=152.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcC---CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCCh
Q 003175 460 KFLPCRNKEMEDITAFIKGATCD---DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASP 536 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~---~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~ 536 (842)
..++|++..++.|...+.....+ ...+..++||+||+|||||++++++++.+.... ..++++||..+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~-------~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE-------EAMIRIDMTEYMEK 630 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG-------GGEEEECTTTCCSS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC-------CcEEEEechhccch
Confidence 45789999999999999886543 111235899999999999999999999986421 45999999987764
Q ss_pred HHHHHHHHHHHhCCCC---CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCC------
Q 003175 537 ENIYRVIYEALSGHRV---SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKP------ 607 (842)
Q Consensus 537 ~~~~~~i~~~l~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~------ 607 (842)
..... +.|... ++... ..+...+.. ..+.||||||+|.+....++.|+.+++.....
T Consensus 631 ~~~s~-----l~g~~~~~~G~~~~-g~l~~~~~~--------~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~ 696 (854)
T 1qvr_A 631 HAVSR-----LIGAPPGYVGYEEG-GQLTEAVRR--------RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRT 696 (854)
T ss_dssp GGGGG-----C---------------CHHHHHHH--------CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCC
T ss_pred hHHHH-----HcCCCCCCcCcccc-chHHHHHHh--------CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCE
Confidence 22111 111111 11110 122222222 13589999999999887889999999854211
Q ss_pred --CCcEEEEEEeCCC-----C------------------CccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc--
Q 003175 608 --NSKLIVIGIANTM-----D------------------LPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI-- 660 (842)
Q Consensus 608 --~~~vivI~~tn~~-----d------------------l~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~-- 660 (842)
-.+++||++||.. + ....+.+.+.+||. ..+.|.|++.+++..|+...+...
T Consensus 697 vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~-~~i~~~pl~~edi~~i~~~~l~~~~~ 775 (854)
T 1qvr_A 697 VDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLD-EIVVFRPLTKEQIRQIVEIQLSYLRA 775 (854)
T ss_dssp EECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCS-BCCBCCCCCHHHHHHHHHHHHHHHHH
T ss_pred eccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcC-eEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 1367899999961 1 12245678889997 478899999999999999887631
Q ss_pred --------ccCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 003175 661 --------EAFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYR 699 (842)
Q Consensus 661 --------~~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~ 699 (842)
..+++++++++++......|++|.+.+++++++..+..+
T Consensus 776 ~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 776 RLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred HHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 258899999988764333699999999999988876654
No 84
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.40 E-value=6e-12 Score=140.34 Aligned_cols=146 Identities=18% Similarity=0.305 Sum_probs=98.2
Q ss_pred cEEEEEecCcccccC------------ChHHHHHhhcCCC-------CCCCcEEEEEEeCC-CCCccccchhhhccCCce
Q 003175 578 PCILLIDELDLLVTR------------NQSVLYNILDWPT-------KPNSKLIVIGIANT-MDLPEKLLPRISSRMGVQ 637 (842)
Q Consensus 578 ~~IlilDEid~L~~~------------~~~~L~~ll~~~~-------~~~~~vivI~~tn~-~dl~~~l~~~l~sR~~~~ 637 (842)
..||++||+|.+... .|+.|+.+++... ...++++||+++.- ..-+..+.|.+.+||. .
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~-i 329 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLP-I 329 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCC-E
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccc-e
Confidence 468999999999865 1468999998532 13567889988710 0112335689999998 5
Q ss_pred eEEecCCCHHHHHHHHHH-----------Hh--cCcc-cCcHHHHHHHHHHHHH-----HhcCHHHHHHHHHHHHHHHHH
Q 003175 638 RLCFGPYNHQQLQEIISS-----------RL--KGIE-AFEKQAIEFASRKVAA-----ISGDARRALEICRRAAEIADY 698 (842)
Q Consensus 638 ~i~f~p~~~~e~~~Il~~-----------~l--~~~~-~~~~~~l~~ia~~~~~-----~~Gd~R~al~ll~~A~~~A~~ 698 (842)
+|.|++|+.+++.+|+.. .+ .+.. .|+++++..+++.... ..+.+|.+..++.++..-+..
T Consensus 330 ~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~ 409 (444)
T 1g41_A 330 RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISF 409 (444)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHh
Confidence 799999999999999941 11 1222 6899999999887543 246778776777776665554
Q ss_pred HHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 699 RIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
+... .......|+.+.|...+.....
T Consensus 410 ~~~~-------~~~~~~~i~~~~v~~~l~~~~~ 435 (444)
T 1g41_A 410 SASD-------MNGQTVNIDAAYVADALGEVVE 435 (444)
T ss_dssp HGGG-------CTTCEEEECHHHHHHHHTTTTT
T ss_pred hccc-------cCCCeEEEeHHHHHHhcCcccc
Confidence 4211 0112356899999877764443
No 85
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.40 E-value=5.4e-16 Score=187.97 Aligned_cols=176 Identities=25% Similarity=0.430 Sum_probs=118.8
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
.+.+++|+||||||||+|+++++..+. ..++.+++..+.+. ..|.. ...+...|
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~----------~~~i~v~~~~l~~~----------~~g~~------~~~i~~~f 563 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQ----------ANFISIKGPELLTM----------WFGES------EANVREIF 563 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHT----------CCCCCCCCSSSTTC----------CTTTS------SHHHHHHH
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhC----------CCEEEEechHhhhh----------hcCcc------HHHHHHHH
Confidence 467899999999999999999999985 45888888876543 01111 12233344
Q ss_pred hcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhhcCCC--CCCCcEEEEEEeCCCCCccccchhhhc
Q 003175 566 LDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNILDWPT--KPNSKLIVIGIANTMDLPEKLLPRISS 632 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll~~~~--~~~~~vivI~~tn~~dl~~~l~~~l~s 632 (842)
..+.. ..|+||||||+|.|.... ..++..|+.... .....++||++||. ++.+++.+.+
T Consensus 564 ~~a~~-----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~---~~~ld~allr 635 (806)
T 1ypw_A 564 DKARQ-----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR---PDIIDPAILR 635 (806)
T ss_dssp HHHHH-----HCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBS---CGGGSCTTSS
T ss_pred HHHHh-----cCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCC---cccCCHHHhC
Confidence 33321 146899999999997543 123444544332 23567899999998 4678888888
Q ss_pred --cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH
Q 003175 633 --RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYR 699 (842)
Q Consensus 633 --R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~ 699 (842)
||. ..|.|++|+.+++.+||+.++.......+..++.+++...+++| |++ .+|+.|...|..+
T Consensus 636 pgRf~-~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~---~l~~~a~~~a~~~ 701 (806)
T 1ypw_A 636 PGRLD-QLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLT---EICQRACKLAIRE 701 (806)
T ss_dssp GGGTT-SCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHH---HHHHHHHHHHHSC
T ss_pred ccccC-ceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHH---HHHHHHHHHHHHH
Confidence 998 58999999999999999999976544333344455555555555 343 5888888888654
No 86
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.39 E-value=4.3e-14 Score=112.17 Aligned_cols=52 Identities=40% Similarity=1.075 Sum_probs=46.7
Q ss_pred ccccccceeecccccccccCccCCCccccccCCCCCCCCCCCCccccccccccc
Q 003175 186 PEVEECRICFRAGRSVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARKL 239 (842)
Q Consensus 186 ~~~~~C~~C~~~~~~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 239 (842)
.++.+|.+|+.+++ ||+||.|+.+||+.|++|||..+|.++|+|+.|.....
T Consensus 3 ~~~~~C~vC~~~g~--ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 3 IHEDFCSVCRKSGQ--LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCCSSCTTTCCCSS--CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCCcCCCCCCc--EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 34568999998876 99999999999999999999999999999999976543
No 87
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.38 E-value=1.3e-11 Score=135.43 Aligned_cols=286 Identities=14% Similarity=0.130 Sum_probs=160.0
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC--
Q 003175 456 ATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL-- 533 (842)
Q Consensus 456 ~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~-- 533 (842)
...|..++||++|++.|.. +.. +.++|+|++|+|||+|++.+++.+. ..++++++...
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~~----------~~~~~~~~~~~~~ 68 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINELN----------LPYIYLDLRKFEE 68 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHHT----------CCEEEEEGGGGTT
T ss_pred CCCHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhcC----------CCEEEEEchhhcc
Confidence 3456779999999999887 642 4799999999999999999998764 23688888764
Q ss_pred ---CChHHHHHHHHHHHhC--------------C----------CCCH----HHHHHHHHHHhhcccCCCCCCCCcEEEE
Q 003175 534 ---ASPENIYRVIYEALSG--------------H----------RVSW----KKALHSLNERFLDGKKIGKEDDRPCILL 582 (842)
Q Consensus 534 ---~s~~~~~~~i~~~l~g--------------~----------~~~~----~~~~~~L~~~f~~~~~~~~~~~~~~Ili 582 (842)
.+...++..+.+.+.. . .... ......+.+.+... . . .+.+||
T Consensus 69 ~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~--~-~~~vlv 142 (357)
T 2fna_A 69 RNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQA---S--K-DNVIIV 142 (357)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHT---C--S-SCEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhc---C--C-CCeEEE
Confidence 4556677766655421 0 0000 00112222222221 1 1 379999
Q ss_pred EecCcccccC----ChHHHHHhhcCCCCCCCcEEEEEEeCCCCCcccc------chhhhccCCceeEEecCCCHHHHHHH
Q 003175 583 IDELDLLVTR----NQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKL------LPRISSRMGVQRLCFGPYNHQQLQEI 652 (842)
Q Consensus 583 lDEid~L~~~----~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l------~~~l~sR~~~~~i~f~p~~~~e~~~I 652 (842)
|||+|.+... -...|..+.+.. .++.||.+++.......+ ...+..|+. ..|.+.|++.++..++
T Consensus 143 lDe~~~~~~~~~~~~~~~l~~~~~~~----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~-~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 143 LDEAQELVKLRGVNLLPALAYAYDNL----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAF-STVELKPFSREEAIEF 217 (357)
T ss_dssp EETGGGGGGCTTCCCHHHHHHHHHHC----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCC-EEEEECCCCHHHHHHH
T ss_pred EECHHHhhccCchhHHHHHHHHHHcC----CCeEEEEEcCchHHHHHHHhccCCCCccccCcc-ceeecCCCCHHHHHHH
Confidence 9999999752 234555555532 256666666542111111 112333433 5799999999999999
Q ss_pred HHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHhh
Q 003175 653 ISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMFQ 731 (842)
Q Consensus 653 l~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~~ 731 (842)
+...+...+ ..++ . ...+....|++..+..++..+... . .......+.+..+. ....
T Consensus 218 l~~~~~~~~~~~~~-~----~~i~~~t~G~P~~l~~~~~~~~~~---~-------------~~~~~~~~~~~~~~-~~~~ 275 (357)
T 2fna_A 218 LRRGFQEADIDFKD-Y----EVVYEKIGGIPGWLTYFGFIYLDN---K-------------NLDFAINQTLEYAK-KLIL 275 (357)
T ss_dssp HHHHHHHHTCCCCC-H----HHHHHHHCSCHHHHHHHHHHHHHH---C-------------CHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHcCCCCCc-H----HHHHHHhCCCHHHHHHHHHHHccc---c-------------chHHHHHHHHHHHH-HHHH
Confidence 998775322 2222 1 234445688887654444432210 0 00001111111111 1111
Q ss_pred ChHHHHH---hhCchHHHHHHHHHHHHHHHcCCcceeHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhcccceEEec
Q 003175 732 APHIQVM---KSCSKLSKIFLTAMVYELYKTGMGETNFEKLAMTVSSLCTSNGEIFPSWDALLRVGCKLGECRIILCE 806 (842)
Q Consensus 732 ~~~~~~l---~~ls~~~kliL~a~~~~~~~~g~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~~li~~~ 806 (842)
....+.+ ..++..++.+|.+++. | . ++.++.+.+...+ +. ..+...+..++..|...++|...
T Consensus 276 ~~l~~~~~~~~~l~~~~~~~l~~la~-----g--~-~~~~l~~~~~~~~---g~-~~~~~~~~~~L~~L~~~gli~~~ 341 (357)
T 2fna_A 276 KEFENFLHGREIARKRYLNIMRTLSK-----C--G-KWSDVKRALELEE---GI-EISDSEIYNYLTQLTKHSWIIKE 341 (357)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHTT-----C--B-CHHHHHHHHHHHH---CS-CCCHHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHhhccccccHHHHHHHHHHHc-----C--C-CHHHHHHHHHHhc---CC-CCCHHHHHHHHHHHHhCCCEEec
Confidence 1111122 1567777788877652 3 2 5666665443332 21 12455677788889999998764
No 88
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.38 E-value=6.5e-14 Score=107.40 Aligned_cols=47 Identities=45% Similarity=1.188 Sum_probs=43.7
Q ss_pred ccceeecccc-cccccCccCCCccccccCCCCCCCCCCCCcccccccc
Q 003175 190 ECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEA 236 (842)
Q Consensus 190 ~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 236 (842)
.|.+|+.+++ +.||+||.|+++||+.|++|+|.++|+|+|+|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 6899998875 7799999999999999999999999999999999975
No 89
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.35 E-value=1.4e-12 Score=158.09 Aligned_cols=202 Identities=22% Similarity=0.305 Sum_probs=136.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcC-------CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 460 KFLPCRNKEMEDITAFIKGATCD-------DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~-------~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
+.+.|.+.++++|.+.+...+.. +...+.+++|+||||||||+++++++..+. ..++.++|..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~----------~~~i~v~~~~ 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----------AFFFLINGPE 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT----------CEEEEEEHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC----------CcEEEEEchH
Confidence 44778888888888888764433 123478899999999999999999988765 5689999866
Q ss_pred CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC-----------hHHHHHhh
Q 003175 533 LASPENIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN-----------QSVLYNIL 601 (842)
Q Consensus 533 ~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~-----------~~~L~~ll 601 (842)
+.+. .. ......+...|..+.. ..+.+|||||+|.+.... +..|+.++
T Consensus 274 l~~~--------------~~--g~~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll 332 (806)
T 1ypw_A 274 IMSK--------------LA--GESESNLRKAFEEAEK-----NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM 332 (806)
T ss_dssp HSSS--------------ST--THHHHHHHHHHHHHHH-----HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHH
T ss_pred hhhh--------------hh--hhHHHHHHHHHHHHHh-----cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHh
Confidence 5431 00 1122333444443321 257899999999998642 24566666
Q ss_pred cCCCCCCCcEEEEEEeCCCCCccccchhhhc--cCCceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHh
Q 003175 602 DWPTKPNSKLIVIGIANTMDLPEKLLPRISS--RMGVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAIS 679 (842)
Q Consensus 602 ~~~~~~~~~vivI~~tn~~dl~~~l~~~l~s--R~~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~ 679 (842)
+... ....+++|+++|.+ +.+++.+.+ ||. ..+.++.++.+++.+||...+.......+..+..++....++.
T Consensus 333 ~g~~-~~~~v~vI~atn~~---~~ld~al~r~gRf~-~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~ 407 (806)
T 1ypw_A 333 DGLK-QRAHVIVMAATNRP---NSIDPALRRFGRFD-REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHV 407 (806)
T ss_dssp HSSC-TTSCCEEEEECSCT---TTSCTTTTSTTSSC-EEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCC
T ss_pred hhhc-ccccEEEecccCCc---hhcCHHHhcccccc-cccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcc
Confidence 6443 35678999999985 556677766 887 6799999999999999999887765554444555555443333
Q ss_pred cCHHHHHHHHHHHHHHHHHH
Q 003175 680 GDARRALEICRRAAEIADYR 699 (842)
Q Consensus 680 Gd~R~al~ll~~A~~~A~~~ 699 (842)
| +....+++.|...+..+
T Consensus 408 g--~dl~~l~~ea~~~a~r~ 425 (806)
T 1ypw_A 408 G--ADLAALCSEAALQAIRK 425 (806)
T ss_dssp H--HHHHHHHHHHHHHHHHH
T ss_pred h--HHHHHHHHHHHHHHHhh
Confidence 3 22334666666655443
No 90
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.32 E-value=3.2e-13 Score=115.60 Aligned_cols=56 Identities=23% Similarity=0.590 Sum_probs=47.9
Q ss_pred ccccccccceeecccc---cccccCccCCCccccccCCCCCCC----CCCCCccccccccccc
Q 003175 184 EDPEVEECRICFRAGR---SVMLECDDCLGGFHLKCLKPPLKE----VPEGEWVCEFCEARKL 239 (842)
Q Consensus 184 ~~~~~~~C~~C~~~~~---~~~l~Cd~C~~~~H~~C~~p~l~~----~p~~~W~C~~C~~~~~ 239 (842)
..++..+|.+|+.++. +.||+||.|+.+||++|++|||.. +|+|+|+|+.|.....
T Consensus 12 ~~e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 12 AMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred cCCCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 3445679999998743 579999999999999999999985 9999999999977553
No 91
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.32 E-value=3.3e-12 Score=126.32 Aligned_cols=155 Identities=15% Similarity=0.194 Sum_probs=97.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++||+.+++.+...+.. . ...+++|+||+|||||++++.+++.+.............++++++..+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~----~--~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 91 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR----R--TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIA---- 91 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS----S--SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHH----
T ss_pred chhhcchHHHHHHHHHHhC----C--CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhc----
Confidence 5689999999998887754 2 25789999999999999999999998642111111135678887643211
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc-----C----ChHHHHHhhcCCCCCCCc
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT-----R----NQSVLYNILDWPTKPNSK 610 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~-----~----~~~~L~~ll~~~~~~~~~ 610 (842)
+.. ........+...+..... .+.+.||||||+|.+.. . ..+.|..+++ ..+
T Consensus 92 ---------~~~-~~~~~~~~~~~~~~~~~~----~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~-----~~~ 152 (187)
T 2p65_A 92 ---------GAK-YRGDFEERLKSILKEVQD----AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA-----RGE 152 (187)
T ss_dssp ---------HCC-SHHHHHHHHHHHHHHHHH----TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH-----TTC
T ss_pred ---------CCC-chhHHHHHHHHHHHHHHh----cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHh-----cCC
Confidence 000 011112222222222211 13568999999999972 1 2345656654 346
Q ss_pred EEEEEEeCCCCCc--cccchhhhccCCceeEEecCCC
Q 003175 611 LIVIGIANTMDLP--EKLLPRISSRMGVQRLCFGPYN 645 (842)
Q Consensus 611 vivI~~tn~~dl~--~~l~~~l~sR~~~~~i~f~p~~ 645 (842)
+.||+++|..++. ..+++++.+||. .|.+++++
T Consensus 153 ~~ii~~~~~~~~~~~~~~~~~l~~R~~--~i~i~~p~ 187 (187)
T 2p65_A 153 LRCIGATTVSEYRQFIEKDKALERRFQ--QILVEQPS 187 (187)
T ss_dssp SCEEEEECHHHHHHHTTTCHHHHHHEE--EEECCSCC
T ss_pred eeEEEecCHHHHHHHHhccHHHHHhcC--cccCCCCC
Confidence 7888888864321 246789999996 48888774
No 92
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.31 E-value=1.1e-11 Score=150.22 Aligned_cols=199 Identities=16% Similarity=0.171 Sum_probs=129.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
+.++||+++++++...+.. . ..+++||+||||||||++|+.+++.+........+....++.+++ ..
T Consensus 180 d~iiG~~~~i~~l~~~l~~----~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~---- 246 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSR----R--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GT---- 246 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHC----S--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhC----C--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cc----
Confidence 4589999999999888764 2 257899999999999999999999986421111112355777776 00
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 540 YRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 540 ~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
...|. ....+...|..... ..+.||||| .....++.|..++ ....+.+|++||.
T Consensus 247 ------~~~G~------~e~~l~~~~~~~~~-----~~~~iLfiD----~~~~~~~~L~~~l-----~~~~v~~I~at~~ 300 (758)
T 3pxi_A 247 ------KYRGE------FEDRLKKVMDEIRQ-----AGNIILFID----AAIDASNILKPSL-----ARGELQCIGATTL 300 (758)
T ss_dssp ------------------CTTHHHHHHHHHT-----CCCCEEEEC----C--------CCCT-----TSSSCEEEEECCT
T ss_pred ------cccch------HHHHHHHHHHHHHh-----cCCEEEEEc----CchhHHHHHHHHH-----hcCCEEEEeCCCh
Confidence 00111 11122233332221 256899999 1112233333333 2567999999987
Q ss_pred CCCc--cccchhhhccCCceeEEecCCCHHHHHHHHHHHhcCc-----ccCcHHHHHHHHHHHHHHhc---CHHHHHHHH
Q 003175 620 MDLP--EKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKGI-----EAFEKQAIEFASRKVAAISG---DARRALEIC 689 (842)
Q Consensus 620 ~dl~--~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~~-----~~~~~~~l~~ia~~~~~~~G---d~R~al~ll 689 (842)
.++. ..+++.+.+|| +.|.|++|+.+++.+||...+... ..+++++++.+++....+.+ -...+++++
T Consensus 301 ~~~~~~~~~d~al~rRf--~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll 378 (758)
T 3pxi_A 301 DEYRKYIEKDAALERRF--QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (758)
T ss_dssp TTTHHHHTTCSHHHHSE--EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred HHHHHHhhccHHHHhhC--cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHH
Confidence 5432 25688999999 469999999999999999877653 25789999999888766543 357888999
Q ss_pred HHHHHHHHHH
Q 003175 690 RRAAEIADYR 699 (842)
Q Consensus 690 ~~A~~~A~~~ 699 (842)
..|...+..+
T Consensus 379 ~~a~~~~~~~ 388 (758)
T 3pxi_A 379 DEAGSKVRLR 388 (758)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9888766543
No 93
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.30 E-value=4.9e-13 Score=161.87 Aligned_cols=97 Identities=13% Similarity=0.353 Sum_probs=83.9
Q ss_pred hhhhhhhhceeeccCCceEEEEEeecCCcccccCCCCCcccccccccCCccccccchhccceeeeCccc---ccc-----
Q 003175 266 DLWAANIQSMWKEVDGNYWCRVFWYMIPEETAAGRQPHNLRRELYRTNDFANIEMESIIRHCSVMSPKD---FVK----- 337 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~g~~~~~~~w~~~peEt~~~~~~~~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~---y~~----- 337 (842)
..|||+|+.||++.+|++|++|+||+||+||++|+. +.++|||+|++.|++++++|.+||.|+.... |..
T Consensus 175 ppyIarIe~m~ed~~g~k~~~v~Wf~rp~ET~lg~~--~~~~ElFlsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~ 252 (1002)
T 3swr_A 175 PLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGAT--SDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 252 (1002)
T ss_dssp CCEEEEEEEEEEETTTEEEEEEEEEEEGGGSTTGGG--SCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCC
T ss_pred CceEEEEEEEeecCCCCeEEEEEEEecchhcccccC--CCCCceEeeccccCCcHHHhceeeEEEEccCCcchhhhcccc
Confidence 369999999999999999999999999999999987 7799999999999999999999999996443 211
Q ss_pred -ccc---CCCCEEEEeeEEecCccceeeccc
Q 003175 338 -AND---QGDDIFLCEYEYDIHWHSFKRIAD 364 (842)
Q Consensus 338 -~~~---~~~~~~~C~~~y~~~~~~fk~i~~ 364 (842)
..+ .++++|||++.|+..++.|+++..
T Consensus 253 ~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp~ 283 (1002)
T 3swr_A 253 PESLLEGDDGKTYFYQLWYDQDYARFESPPK 283 (1002)
T ss_dssp CCCSCCCCCCTSEEEEEEEETTTTEEECCCC
T ss_pred cccccccCCCCeEEEEEEECCCCCcccCCCh
Confidence 111 136899999999999999999863
No 94
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.30 E-value=4.9e-13 Score=165.52 Aligned_cols=97 Identities=14% Similarity=0.388 Sum_probs=83.4
Q ss_pred hhhhhhhceeeccCCceEEEEEeecCCcccccCCCCCcccccccccCCccccccchhccceeeeCccc---ccccc----
Q 003175 267 LWAANIQSMWKEVDGNYWCRVFWYMIPEETAAGRQPHNLRRELYRTNDFANIEMESIIRHCSVMSPKD---FVKAN---- 339 (842)
Q Consensus 267 ~~~~~I~~i~~~~~g~~~~~~~w~~~peEt~~~~~~~~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~---y~~~~---- 339 (842)
.|+|+|+.||++.+|++|++|+|||||+||++|+. +.++|||+|++.|++++++|.+||.|++... |.+..
T Consensus 487 ~yiarIe~iwe~~dg~~~~~~~WfyRp~ETvlg~~--~~~rElFlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~ 564 (1330)
T 3av4_A 487 LYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGAT--SDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDP 564 (1330)
T ss_dssp CEEEEEEEEEEETTCCEEEEEEEEEEGGGSTTGGG--SCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC---
T ss_pred CEEEEEeeeeecCCCCEEEEEEEEEchHHcccccc--cCCCeEEEecccccCcHHHhcceeEEEEeccchhhhhhcccCc
Confidence 79999999999999999999999999999998874 7899999999999999999999999997544 53211
Q ss_pred ------cCCCCEEEEeeEEecCccceeecccC
Q 003175 340 ------DQGDDIFLCEYEYDIHWHSFKRIADI 365 (842)
Q Consensus 340 ------~~~~~~~~C~~~y~~~~~~fk~i~~~ 365 (842)
..+.++|||++.|+..++.|.++...
T Consensus 565 ~~~~~~~~~~~~F~C~~~Yd~~~~~F~~lp~~ 596 (1330)
T 3av4_A 565 ETTLPGAEDGKTYFFQLWYNQEYARFESPPKT 596 (1330)
T ss_dssp ----------CCEEEEEEEETTTTEEECCCCC
T ss_pred cccccccccCCceEEEeEECCccCccCCcCcC
Confidence 13567899999999999999998763
No 95
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.30 E-value=1e-12 Score=125.34 Aligned_cols=139 Identities=17% Similarity=0.209 Sum_probs=97.2
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHH
Q 003175 461 FLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIY 540 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~ 540 (842)
.++|+...++++.+.+..+... +.+++|+|+||||||++|+++++..... ...|+ ++|..+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~----~~~vll~G~~GtGKt~lA~~i~~~~~~~-------~~~~v-~~~~~~~~~~~-- 67 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET----DIAVWLYGAPGTGRMTGARYLHQFGRNA-------QGEFV-YRELTPDNAPQ-- 67 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC----CSCEEEESSTTSSHHHHHHHHHHSSTTT-------TSCCE-EEECCTTTSSC--
T ss_pred CceeCCHHHHHHHHHHHHHhCC----CCCEEEECCCCCCHHHHHHHHHHhCCcc-------CCCEE-EECCCCCcchh--
Confidence 4789999999999999887543 4679999999999999999998765432 13478 99987665310
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCC
Q 003175 541 RVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTM 620 (842)
Q Consensus 541 ~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~ 620 (842)
+...|..+ ...+|||||+|.|....|..|+.++.. ....+.||++||..
T Consensus 68 --------------------~~~~~~~a--------~~g~l~ldei~~l~~~~q~~Ll~~l~~---~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 68 --------------------LNDFIALA--------QGGTLVLSHPEHLTREQQYHLVQLQSQ---EHRPFRLIGIGDTS 116 (145)
T ss_dssp --------------------HHHHHHHH--------TTSCEEEECGGGSCHHHHHHHHHHHHS---SSCSSCEEEEESSC
T ss_pred --------------------hhcHHHHc--------CCcEEEEcChHHCCHHHHHHHHHHHhh---cCCCEEEEEECCcC
Confidence 11112111 235899999999988778888888853 24456788888863
Q ss_pred C--C--ccccchhhhccCCceeEEecCC
Q 003175 621 D--L--PEKLLPRISSRMGVQRLCFGPY 644 (842)
Q Consensus 621 d--l--~~~l~~~l~sR~~~~~i~f~p~ 644 (842)
- + ...+.+.+..|+....|.+||+
T Consensus 117 ~~~~~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 117 LVELAASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred HHHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence 1 0 1235566777776667888886
No 96
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.26 E-value=1.3e-12 Score=106.49 Aligned_cols=48 Identities=40% Similarity=0.945 Sum_probs=43.1
Q ss_pred ccceeecccc-cccccCccCCCccccccCCCCCCCCCCC-Cccccccccc
Q 003175 190 ECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEG-EWVCEFCEAR 237 (842)
Q Consensus 190 ~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~-~W~C~~C~~~ 237 (842)
.|.+|+..++ +.||+||+|+++||++||+|||..+|+| +|+|+.|..+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 6778887654 6799999999999999999999999999 9999999754
No 97
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.26 E-value=1.3e-12 Score=131.83 Aligned_cols=54 Identities=37% Similarity=0.983 Sum_probs=49.0
Q ss_pred ccccccccceeecccccccccCccCCCccccccCCCCCCCCCCCCccccccccccc
Q 003175 184 EDPEVEECRICFRAGRSVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARKL 239 (842)
Q Consensus 184 ~~~~~~~C~~C~~~~~~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 239 (842)
++.+.++|.+|+++|+ ||+||+|+++||+.|++|||..+|.|+|+|+.|...+.
T Consensus 3 ~d~~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 3 DDPNEDWCAVCQNGGD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CCSSCSSBTTTCCCEE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCCCCc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 4556779999999887 99999999999999999999999999999999987653
No 98
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.25 E-value=1.6e-10 Score=126.62 Aligned_cols=200 Identities=12% Similarity=0.073 Sum_probs=140.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERF 565 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f 565 (842)
..+.++|+|++|+||+++++.+++.+.+... ..+.++.+++. .+...+...+. ....|
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~--~~~~~l~~~~~----------------~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGF----EEHHTFSIDPN--TDWNAIFSLCQ----------------AMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTC----CEEEEEECCTT--CCHHHHHHHHH----------------HHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCC----CeeEEEEecCC--CCHHHHHHHhc----------------CcCCc
Confidence 3688999999999999999999998875411 01234444431 22222211110 00112
Q ss_pred hcccCCCCCCCCcEEEEEecCcc-cccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCC---ccccchhhhccCCceeEEe
Q 003175 566 LDGKKIGKEDDRPCILLIDELDL-LVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDL---PEKLLPRISSRMGVQRLCF 641 (842)
Q Consensus 566 ~~~~~~~~~~~~~~IlilDEid~-L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl---~~~l~~~l~sR~~~~~i~f 641 (842)
+...||+|||+|. +....++.|...++.+ ....+||.+++..+- ...+.+.+.+|+ ..+.|
T Consensus 75 ----------~~~kvvii~~~~~kl~~~~~~aLl~~le~p---~~~~~~il~~~~~~~~~~~~k~~~~i~sr~--~~~~~ 139 (343)
T 1jr3_D 75 ----------ASRQTLLLLLPENGPNAAINEQLLTLTGLL---HDDLLLIVRGNKLSKAQENAAWFTALANRS--VQVTC 139 (343)
T ss_dssp ----------CSCEEEEEECCSSCCCTTHHHHHHHHHTTC---BTTEEEEEEESCCCTTTTTSHHHHHHTTTC--EEEEE
T ss_pred ----------cCCeEEEEECCCCCCChHHHHHHHHHHhcC---CCCeEEEEEcCCCChhhHhhHHHHHHHhCc--eEEEe
Confidence 2457999999999 8777788899999854 345566656665432 456788999999 46999
Q ss_pred cCCCHHHHHHHHHHHhcCcc-cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHH
Q 003175 642 GPYNHQQLQEIISSRLKGIE-AFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMA 720 (842)
Q Consensus 642 ~p~~~~e~~~Il~~~l~~~~-~~~~~~l~~ia~~~~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~ 720 (842)
.+++.+++.+.|..++...+ .+++++++++++. ..||+|.+++.+.+...++. ...||.+
T Consensus 140 ~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~---~~gdl~~~~~elekl~l~~~----------------~~~It~e 200 (343)
T 1jr3_D 140 QTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC---YEGNLLALAQALERLSLLWP----------------DGKLTLP 200 (343)
T ss_dssp CCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHS---STTCHHHHHHHHHHHHHHCT----------------TCEECHH
T ss_pred eCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---hchHHHHHHHHHHHHHHhcC----------------CCCCCHH
Confidence 99999999999999997666 7889999987765 48899999999988776531 2469999
Q ss_pred HHHHHHHHHhhChHHHHHhhC
Q 003175 721 DVEAAIQEMFQAPHIQVMKSC 741 (842)
Q Consensus 721 dv~~A~~~~~~~~~~~~l~~l 741 (842)
+|.+.+.........+.+..+
T Consensus 201 ~V~~~~~~~~~~~if~l~~ai 221 (343)
T 1jr3_D 201 RVEQAVNDAAHFTPFHWVDAL 221 (343)
T ss_dssp HHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHhhhhcCCHHHHHHHH
Confidence 998888766555444544443
No 99
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.24 E-value=1.3e-12 Score=111.63 Aligned_cols=53 Identities=34% Similarity=0.830 Sum_probs=45.4
Q ss_pred ccccccceeeccc--c-cccccCccCCCccccccCCCCCCCCCCCCcccccccccccC
Q 003175 186 PEVEECRICFRAG--R-SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARKLG 240 (842)
Q Consensus 186 ~~~~~C~~C~~~~--~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~ 240 (842)
++...|.+|+.++ + +.||+||.|+.+||+.|++|++ +|+|+|||+.|......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCccch
Confidence 4556899999876 3 6799999999999999999874 99999999999876543
No 100
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=2.1e-12 Score=107.03 Aligned_cols=47 Identities=40% Similarity=1.030 Sum_probs=43.3
Q ss_pred ccceeecccc-cccccCccCCCccccccCCCCCCCCCCC-Ccccccccc
Q 003175 190 ECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEG-EWVCEFCEA 236 (842)
Q Consensus 190 ~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~-~W~C~~C~~ 236 (842)
.|.+|+..++ +.||+||.|+.+||++||+|||..+|+| +|+|+.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 8999997654 6799999999999999999999999999 999999964
No 101
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=8.9e-13 Score=154.33 Aligned_cols=139 Identities=22% Similarity=0.166 Sum_probs=97.0
Q ss_pred cEEEEEecCcccccCChHHHHHhhcCCCC----------CCCcEEEEEEeCCCCCcc----------ccchhhhccCCce
Q 003175 578 PCILLIDELDLLVTRNQSVLYNILDWPTK----------PNSKLIVIGIANTMDLPE----------KLLPRISSRMGVQ 637 (842)
Q Consensus 578 ~~IlilDEid~L~~~~~~~L~~ll~~~~~----------~~~~vivI~~tn~~dl~~----------~l~~~l~sR~~~~ 637 (842)
..||+|||+|.+....++.|+.+++.... ...++.||+++|...-.. .+.+.+.+||+..
T Consensus 392 ~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~ 471 (595)
T 3f9v_A 392 GGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLI 471 (595)
T ss_dssp SSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCC
T ss_pred CCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEE
Confidence 36999999999988888999999974321 135678999999753111 6778999999853
Q ss_pred eEEecCCCHHHHHHHHHHHhcCc--------------------------ccCcHHHHHHHHHHHH------------HHh
Q 003175 638 RLCFGPYNHQQLQEIISSRLKGI--------------------------EAFEKQAIEFASRKVA------------AIS 679 (842)
Q Consensus 638 ~i~f~p~~~~e~~~Il~~~l~~~--------------------------~~~~~~~l~~ia~~~~------------~~~ 679 (842)
+.+.++...+...|+.+.+... +.+++++.+.+.+.+. ...
T Consensus 472 -~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~ 550 (595)
T 3f9v_A 472 -FILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPIL 550 (595)
T ss_dssp -EEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBC
T ss_pred -EEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 4444444444666666655421 1344555555555543 135
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHh
Q 003175 680 GDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMF 730 (842)
Q Consensus 680 Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~ 730 (842)
+++|.+..+++.|...|..+ +...|+.+|+.+|+.-+.
T Consensus 551 ~s~R~l~~lirla~a~A~l~-------------~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 551 ITPRQLEALIRISEAYAKMA-------------LKAEVTREDAERAINIMR 588 (595)
T ss_dssp SSTTTTTHHHHHHHHHHHTT-------------SSCCSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHh-------------CcCCCCHHHHHHHHHHHH
Confidence 78999999999998888755 467899999999987443
No 102
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.22 E-value=1.5e-12 Score=105.80 Aligned_cols=54 Identities=26% Similarity=0.698 Sum_probs=45.9
Q ss_pred cccccccceeeccc--c-cccccCccCCCccccccCCCCCCC--C-CCCCcccccccccc
Q 003175 185 DPEVEECRICFRAG--R-SVMLECDDCLGGFHLKCLKPPLKE--V-PEGEWVCEFCEARK 238 (842)
Q Consensus 185 ~~~~~~C~~C~~~~--~-~~~l~Cd~C~~~~H~~C~~p~l~~--~-p~~~W~C~~C~~~~ 238 (842)
+.+...|.+|+.+. + +.||+||.|+.+||++|++|||.. + |+++|+|+.|....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 34556899999872 2 679999999999999999999887 4 89999999998765
No 103
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.22 E-value=1e-12 Score=107.03 Aligned_cols=53 Identities=34% Similarity=0.785 Sum_probs=45.2
Q ss_pred ccccccccceeeccc--c-cccccCccCCCccccccCCCCCCCCCCCCcccccccccc
Q 003175 184 EDPEVEECRICFRAG--R-SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARK 238 (842)
Q Consensus 184 ~~~~~~~C~~C~~~~--~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 238 (842)
...+...|.+|+.++ + +.||+||+|+.+||++|++|+ .+|+|+|||+.|..+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQSR 67 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS--SCCSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC--cCCCCCcCCccCcCcC
Confidence 344566899999875 3 679999999999999999987 4999999999998754
No 104
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.21 E-value=1.9e-12 Score=107.98 Aligned_cols=56 Identities=27% Similarity=0.554 Sum_probs=48.3
Q ss_pred Cccccccccceeecccc-cccccCccCCCccccccCCCCCCCCCCCCcccccccccc
Q 003175 183 EEDPEVEECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARK 238 (842)
Q Consensus 183 ~~~~~~~~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 238 (842)
+++.+..+|.+|+..++ +.||+||.|+.|||+.|+++++..+|.++|+|+.|..+.
T Consensus 13 ~~~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 13 EWGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SSSCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred ccCCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 34556678999998876 579999999999999999999888888999999997654
No 105
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.20 E-value=5.6e-12 Score=124.84 Aligned_cols=51 Identities=37% Similarity=0.982 Sum_probs=46.9
Q ss_pred cccccceeecccccccccCccCCCccccccCCCCCCCCCCCCccccccccccc
Q 003175 187 EVEECRICFRAGRSVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARKL 239 (842)
Q Consensus 187 ~~~~C~~C~~~~~~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 239 (842)
++++|.+|+++|+ ||+||+|+++||+.|++|+|..+|.|+|+|+.|.....
T Consensus 3 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNGGE--LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCCSS--CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCCCe--eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 4568999998887 99999999999999999999999999999999987653
No 106
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.20 E-value=4.1e-12 Score=105.07 Aligned_cols=47 Identities=38% Similarity=0.961 Sum_probs=42.8
Q ss_pred ccceeecccc-cccccCccCCCccccccCCCCCCCCCCCC-cccccccc
Q 003175 190 ECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEGE-WVCEFCEA 236 (842)
Q Consensus 190 ~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~-W~C~~C~~ 236 (842)
.|.+|+..++ +.||+||.|+++||++|++|||..+|+++ |+|+.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 6888888766 78999999999999999999999999998 99999974
No 107
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=99.19 E-value=8.8e-12 Score=101.67 Aligned_cols=54 Identities=30% Similarity=0.803 Sum_probs=45.6
Q ss_pred CCccccccccceeecccccccccCcc--CC-CccccccCCCCCCCCCCCCcccccccccc
Q 003175 182 DEEDPEVEECRICFRAGRSVMLECDD--CL-GGFHLKCLKPPLKEVPEGEWVCEFCEARK 238 (842)
Q Consensus 182 ~~~~~~~~~C~~C~~~~~~~~l~Cd~--C~-~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 238 (842)
+.++.+..+| +|+...++.||+||. |+ .|||+.|++ |..+|.+.||||.|....
T Consensus 10 ~~d~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 10 PVDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCTTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred ccCCCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3445567799 899876667999999 77 799999999 899999999999997754
No 108
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.19 E-value=6.1e-12 Score=119.55 Aligned_cols=136 Identities=8% Similarity=0.039 Sum_probs=96.7
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHH
Q 003175 461 FLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIY 540 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~ 540 (842)
.++|++.+++++.+.+..+... +.+++|+|+||||||++|+++++... .+++++|..+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~----~~~vll~G~~GtGKt~lA~~i~~~~~-----------~~~~~~~~~~~~~~--- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR----TSPVFLTGEAGSPFETVARYFHKNGT-----------PWVSPARVEYLIDM--- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC----SSCEEEEEETTCCHHHHHGGGCCTTS-----------CEECCSSTTHHHHC---
T ss_pred CceeCCHHHHHHHHHHHHHhCC----CCcEEEECCCCccHHHHHHHHHHhCC-----------CeEEechhhCChHh---
Confidence 4779999999999999887643 46799999999999999998877543 48999987643210
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCC
Q 003175 541 RVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTM 620 (842)
Q Consensus 541 ~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~ 620 (842)
+...|..+ ...+|||||+|.+....|..|+.+++... ...+.+|++||..
T Consensus 67 --------------------~~~~~~~a--------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~--~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 --------------------PMELLQKA--------EGGVLYVGDIAQYSRNIQTGITFIIGKAE--RCRVRVIASCSYA 116 (143)
T ss_dssp --------------------HHHHHHHT--------TTSEEEEEECTTCCHHHHHHHHHHHHHHT--TTTCEEEEEEEEC
T ss_pred --------------------hhhHHHhC--------CCCeEEEeChHHCCHHHHHHHHHHHHhCC--CCCEEEEEecCCC
Confidence 11222222 23689999999998877888888887432 4457788888853
Q ss_pred -C-CccccchhhhccCCceeEEecCC
Q 003175 621 -D-LPEKLLPRISSRMGVQRLCFGPY 644 (842)
Q Consensus 621 -d-l~~~l~~~l~sR~~~~~i~f~p~ 644 (842)
+ +...+.+.+..|+....|.+||+
T Consensus 117 ~~~~~~~~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 117 AGSDGISCEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp TTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred HHHHHhCccHHHHHHhcCcEEeCCCC
Confidence 1 11116778889988778999986
No 109
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.17 E-value=6.2e-11 Score=139.64 Aligned_cols=138 Identities=22% Similarity=0.285 Sum_probs=99.5
Q ss_pred CcEEEEEecCcccccCChHHHHHhhcCCC------------------CCCCcEEEEEEeCCCCCccccchhhhccCCc--
Q 003175 577 RPCILLIDELDLLVTRNQSVLYNILDWPT------------------KPNSKLIVIGIANTMDLPEKLLPRISSRMGV-- 636 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~~~~L~~ll~~~~------------------~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~-- 636 (842)
.+.+|||||++.|....|+.|+.+++... ....++.||+++|.. +.+.+++.+.+||..
T Consensus 201 ~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~-~~~~l~~~l~~R~~v~~ 279 (604)
T 3k1j_A 201 HKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD-TVDKMHPALRSRIRGYG 279 (604)
T ss_dssp TTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH-HHHHSCHHHHHHHHHHS
T ss_pred CCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH-HHhhcCHHHHHHhhccc
Confidence 34599999999997777888988886221 112467899999862 335788999999953
Q ss_pred eeEEecCC---CHHHHHHHHHHHhc------CcccCcHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHH
Q 003175 637 QRLCFGPY---NHQQLQEIISSRLK------GIEAFEKQAIEFASRKVAAISG-------DARRALEICRRAAEIADYRI 700 (842)
Q Consensus 637 ~~i~f~p~---~~~e~~~Il~~~l~------~~~~~~~~~l~~ia~~~~~~~G-------d~R~al~ll~~A~~~A~~~~ 700 (842)
..+.|+.. ..+.+..++..... ....+++++++.+.+......| ++|.+.++++.|..+|..+
T Consensus 280 i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~- 358 (604)
T 3k1j_A 280 YEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKK- 358 (604)
T ss_dssp EEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHT-
T ss_pred eEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhc-
Confidence 24566543 55556666544332 2247899999988887665566 5999999999998888654
Q ss_pred hhhccCCCcCCcCCCcccHHHHHHHHHH
Q 003175 701 KKQTSNKNSASVGKSLVGMADVEAAIQE 728 (842)
Q Consensus 701 ~~~~~~~~~~~~~~~~It~~dv~~A~~~ 728 (842)
+...|+.+||.+|+..
T Consensus 359 ------------~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 359 ------------GKKYVEREDVIEAVKM 374 (604)
T ss_dssp ------------TCSSBCHHHHHHHHHH
T ss_pred ------------CcccccHHHHHHHHHh
Confidence 3568999999999864
No 110
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.17 E-value=1.7e-11 Score=104.28 Aligned_cols=53 Identities=30% Similarity=0.823 Sum_probs=45.3
Q ss_pred CccccccccceeecccccccccCcc--CC-CccccccCCCCCCCCCCCCcccccccccc
Q 003175 183 EEDPEVEECRICFRAGRSVMLECDD--CL-GGFHLKCLKPPLKEVPEGEWVCEFCEARK 238 (842)
Q Consensus 183 ~~~~~~~~C~~C~~~~~~~~l~Cd~--C~-~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 238 (842)
.++++..+| +|+...++.||+||. |+ .|||+.|++ |...|.+.||||.|..+.
T Consensus 31 ~d~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 31 VDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCSCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred cCCCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 344566799 999976667999999 77 799999999 899999999999998654
No 111
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=99.16 E-value=4.6e-12 Score=99.40 Aligned_cols=50 Identities=32% Similarity=0.875 Sum_probs=42.4
Q ss_pred cccccccceeecccccccccCcc--CC-CccccccCCCCCCCCCCCCccccccccc
Q 003175 185 DPEVEECRICFRAGRSVMLECDD--CL-GGFHLKCLKPPLKEVPEGEWVCEFCEAR 237 (842)
Q Consensus 185 ~~~~~~C~~C~~~~~~~~l~Cd~--C~-~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 237 (842)
+++..+| +|++.+++.||+||. |+ .|||+.|++ |...|.++|+||.|..+
T Consensus 6 ~~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 6 SNEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp --CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHCC
T ss_pred CCCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccCc
Confidence 4456799 899876667999999 77 799999999 89999999999999764
No 112
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=99.16 E-value=4.6e-12 Score=99.94 Aligned_cols=51 Identities=31% Similarity=0.867 Sum_probs=42.0
Q ss_pred ccccccccceeecccccccccCcc--CC-CccccccCCCCCCCCCCCCccccccccc
Q 003175 184 EDPEVEECRICFRAGRSVMLECDD--CL-GGFHLKCLKPPLKEVPEGEWVCEFCEAR 237 (842)
Q Consensus 184 ~~~~~~~C~~C~~~~~~~~l~Cd~--C~-~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 237 (842)
++++..+| +|++.+++.||+||. |+ .|||+.|++ |..+|.|.|+||.|..+
T Consensus 6 d~~e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 6 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp ---CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC-
T ss_pred CCCCCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccCc
Confidence 44566799 899876677999999 66 899999999 89999999999999764
No 113
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=99.13 E-value=7.9e-12 Score=99.02 Aligned_cols=52 Identities=31% Similarity=0.805 Sum_probs=42.2
Q ss_pred CccccccccceeecccccccccCcc--CC-CccccccCCCCCCCCCCCCccccccccc
Q 003175 183 EEDPEVEECRICFRAGRSVMLECDD--CL-GGFHLKCLKPPLKEVPEGEWVCEFCEAR 237 (842)
Q Consensus 183 ~~~~~~~~C~~C~~~~~~~~l~Cd~--C~-~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 237 (842)
.++++..+| +|++.+++.||+||. |+ .|||+.|++ |...|.+.|+||.|..+
T Consensus 6 ~d~~e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 6 IDPNEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp ----CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred cCCCCCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 344566799 899976667999999 55 999999999 88999999999999764
No 114
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.11 E-value=2e-11 Score=107.45 Aligned_cols=55 Identities=29% Similarity=0.748 Sum_probs=48.4
Q ss_pred CccccccccceeecccccccccCc--cCCCccccccCCCCCCCCCCCCcccccccccccCc
Q 003175 183 EEDPEVEECRICFRAGRSVMLECD--DCLGGFHLKCLKPPLKEVPEGEWVCEFCEARKLGK 241 (842)
Q Consensus 183 ~~~~~~~~C~~C~~~~~~~~l~Cd--~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~~ 241 (842)
.+..+..+|.+|+++|+ ||+|| .|++|||+.|++ |..+|+|+|+||.|.+...++
T Consensus 10 ~~~~~~~~C~~C~~~G~--ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 10 PKQMHEDYCFQCGDGGE--LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp CCCSSCSSCTTTCCCSE--EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CcCCCCCCCCcCCCCCc--EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 34456679999998777 99999 899999999999 999999999999998877665
No 115
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=99.10 E-value=2.3e-11 Score=120.79 Aligned_cols=50 Identities=40% Similarity=0.910 Sum_probs=41.2
Q ss_pred ccccceeecccc-cccccCccCCCccccccCCCCCCCCCCC-Cccccccccc
Q 003175 188 VEECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEG-EWVCEFCEAR 237 (842)
Q Consensus 188 ~~~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~-~W~C~~C~~~ 237 (842)
...|.+|+..++ +.||+||+|+.+||+.|++|||..+|+| +|+||.|...
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 347999998655 6799999999999999999999999999 9999999753
No 116
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.09 E-value=2.7e-11 Score=119.75 Aligned_cols=48 Identities=38% Similarity=0.996 Sum_probs=45.1
Q ss_pred cccceeecccccccccCccCCCccccccCCCCCCCCCCCCcccccccccc
Q 003175 189 EECRICFRAGRSVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARK 238 (842)
Q Consensus 189 ~~C~~C~~~~~~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 238 (842)
++|.+|+.+|+ ||+||+|+++||+.|+.|+|..+|.|+|+|+.|....
T Consensus 3 ~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKPGD--LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCCSS--CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCCCc--eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 48999999887 9999999999999999999999999999999998764
No 117
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.08 E-value=3.8e-11 Score=105.06 Aligned_cols=52 Identities=29% Similarity=0.722 Sum_probs=44.1
Q ss_pred cccccccceeecccc-cccccCccCCCccccccCCCCCCCCCCCCcccccccccc
Q 003175 185 DPEVEECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARK 238 (842)
Q Consensus 185 ~~~~~~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 238 (842)
+++...| +|+..++ +.||+||.|+.|||+.|++|++..+|+ .|+|+.|..+.
T Consensus 25 ~~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~~~~ 77 (98)
T 2lv9_A 25 GTDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQPRN 77 (98)
T ss_dssp CCCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTSSSC
T ss_pred CCCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCcCCC
Confidence 3445678 8988765 789999999999999999999888885 89999997654
No 118
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=99.07 E-value=2.5e-11 Score=103.00 Aligned_cols=51 Identities=31% Similarity=0.775 Sum_probs=42.2
Q ss_pred CccccccccceeecccccccccCccCC---CccccccCCCCCCCCCCCCccccc-ccc
Q 003175 183 EEDPEVEECRICFRAGRSVMLECDDCL---GGFHLKCLKPPLKEVPEGEWVCEF-CEA 236 (842)
Q Consensus 183 ~~~~~~~~C~~C~~~~~~~~l~Cd~C~---~~~H~~C~~p~l~~~p~~~W~C~~-C~~ 236 (842)
+++++..+| +|+..+++.||+||.|+ .|||+.|++ |...|.+.||||. |..
T Consensus 21 ~~~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 21 NNNQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp ---CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 345566799 89987666799999966 999999999 8999999999999 964
No 119
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.04 E-value=1.2e-10 Score=129.49 Aligned_cols=223 Identities=18% Similarity=0.251 Sum_probs=150.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
..+.|....++++...+...... ...++|+|++|||||++++.+....... .-+|+.+||..+..
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~----~~~vli~Ge~GtGK~~lAr~ih~~s~r~-------~~~fv~v~~~~~~~---- 201 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCA----ECPVLITGESGVGKEVVARLIHKLSDRS-------KEPFVALNVASIPR---- 201 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTC----CSCEEEECSTTSSHHHHHHHHHHHSTTT-------TSCEEEEETTTSCH----
T ss_pred hhhhhccHHhhHHHHHHHHhcCC----CCCeEEecCCCcCHHHHHHHHHHhcCCC-------CCCeEEEecCCCCH----
Confidence 45788888999999988885533 4668999999999999999887654422 14599999998653
Q ss_pred HHHHHHHHhCCCCC-HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC--------CCCCc
Q 003175 540 YRVIYEALSGHRVS-WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT--------KPNSK 610 (842)
Q Consensus 540 ~~~i~~~l~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~--------~~~~~ 610 (842)
..+...++|+..+ +..+...-...|..+ ...+||||||+.|....|..|+.+++... .....
T Consensus 202 -~~~~~elfg~~~g~~tga~~~~~g~~~~a--------~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 272 (387)
T 1ny5_A 202 -DIFEAELFGYEKGAFTGAVSSKEGFFELA--------DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVN 272 (387)
T ss_dssp -HHHHHHHHCBCTTSSTTCCSCBCCHHHHT--------TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECC
T ss_pred -HHHHHHhcCCCCCCCCCcccccCCceeeC--------CCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeecc
Confidence 2344556564321 000000000011111 33699999999999888888999886321 01235
Q ss_pred EEEEEEeCCCCCc-----cccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcCc--------ccCcHHHHHHHHHHH
Q 003175 611 LIVIGIANTMDLP-----EKLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKGI--------EAFEKQAIEFASRKV 675 (842)
Q Consensus 611 vivI~~tn~~dl~-----~~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~~--------~~~~~~~l~~ia~~~ 675 (842)
+.||++||.. +. ..+.+.+..|+....|.+||+.. +++..++.+.+... ..+++++++.+...
T Consensus 273 ~rii~at~~~-l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~- 350 (387)
T 1ny5_A 273 VRILAATNRN-IKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSY- 350 (387)
T ss_dssp CEEEEEESSC-HHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS-
T ss_pred EEEEEeCCCC-HHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC-
Confidence 6788899862 21 23445666677767789999965 78877777766432 24788888876543
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHH
Q 003175 676 AAISGDARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAA 725 (842)
Q Consensus 676 ~~~~Gd~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A 725 (842)
.+.||+|...+++++|+..+. ...|+.+|+-..
T Consensus 351 -~wpGNvreL~~~i~~~~~~~~----------------~~~i~~~~l~~~ 383 (387)
T 1ny5_A 351 -PWYGNVRELKNVIERAVLFSE----------------GKFIDRGELSCL 383 (387)
T ss_dssp -CCTTHHHHHHHHHHHHHHHCC----------------SSEECHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHhCC----------------CCcCcHHHCcHh
Confidence 468999999999999887653 346888887543
No 120
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.03 E-value=6.7e-11 Score=106.58 Aligned_cols=51 Identities=43% Similarity=1.138 Sum_probs=44.9
Q ss_pred cccccceeecccc--cccccCccCCCccccccCCCCCCCCCCCCccccccccc
Q 003175 187 EVEECRICFRAGR--SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEAR 237 (842)
Q Consensus 187 ~~~~C~~C~~~~~--~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 237 (842)
+..+|.+|+..+. +.||+||.|+++||++|++|||.++|+|+|+|+.|+.+
T Consensus 60 ~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~k 112 (112)
T 3v43_A 60 ECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRPR 112 (112)
T ss_dssp TTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSCC
T ss_pred cCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCCc
Confidence 4457999997642 67999999999999999999999999999999999864
No 121
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.02 E-value=5e-11 Score=107.70 Aligned_cols=51 Identities=41% Similarity=1.019 Sum_probs=45.2
Q ss_pred cccccceeecccc-cccccCccCCCccccccCCCCCCCCCCCCccccccccc
Q 003175 187 EVEECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEAR 237 (842)
Q Consensus 187 ~~~~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 237 (842)
+...|.+|+..++ +.||+||.|+++||++|++|||..+|+|+|+|+.|...
T Consensus 57 ~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 57 ECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp GGCCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 3457889988754 67999999999999999999999999999999999754
No 122
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.97 E-value=6.3e-10 Score=122.69 Aligned_cols=209 Identities=19% Similarity=0.252 Sum_probs=140.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHH
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENI 539 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~ 539 (842)
..+.|....+.++...+...... ...++|+|++||||+++++.+....... -.|+.+||..+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~----~~~vli~GesGtGKe~lAr~ih~~s~r~--------~~fv~vnc~~~~~~--- 193 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKS----KAPVLITGESGTGKEIVARLIHRYSGRK--------GAFVDLNCASIPQE--- 193 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTS----CSCEEEECCTTSSHHHHHHHHHHHHCCC--------SCEEEEESSSSCTT---
T ss_pred ccccccchHHHHHHhhhhhhhcc----chhheEEeCCCchHHHHHHHHHHhcccc--------CCcEEEEcccCChH---
Confidence 35778888888888888776543 3569999999999999999887654321 12999999987653
Q ss_pred HHHHHHHHhCCCCC-HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC--------CCCc
Q 003175 540 YRVIYEALSGHRVS-WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK--------PNSK 610 (842)
Q Consensus 540 ~~~i~~~l~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~--------~~~~ 610 (842)
.+...++|+..+ +..+...-...|..+ ...+||||||+.|....|..|+.+++.... ....
T Consensus 194 --~~~~~lfg~~~g~~tga~~~~~g~~~~a--------~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 194 --LAESELFGHEKGAFTGALTRKKGKLELA--------DQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp --THHHHHHEECSCSSSSCCCCEECHHHHT--------TTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECC
T ss_pred --HHHHHhcCccccccCCcccccCChHhhc--------CCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeee
Confidence 333444443221 000000000011111 235899999999998889999999863210 1225
Q ss_pred EEEEEEeCCCCCcc-----ccchhhhccCCceeEEecCCCH--HHHHHHHHHHhcCc--------ccCcHHHHHHHHHHH
Q 003175 611 LIVIGIANTMDLPE-----KLLPRISSRMGVQRLCFGPYNH--QQLQEIISSRLKGI--------EAFEKQAIEFASRKV 675 (842)
Q Consensus 611 vivI~~tn~~dl~~-----~l~~~l~sR~~~~~i~f~p~~~--~e~~~Il~~~l~~~--------~~~~~~~l~~ia~~~ 675 (842)
+.+|++||. ++.+ .+.+.+..|+....|.+||+.. +++..++.+.+... ..+++++++.+...
T Consensus 264 ~rii~at~~-~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~- 341 (368)
T 3dzd_A 264 IRVISATNK-NLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ- 341 (368)
T ss_dssp CEEEEEESS-CHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC-
T ss_pred eEEEEecCC-CHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC-
Confidence 678889885 2222 3445677888777799999987 78888777776532 25889998886543
Q ss_pred HHHhcCHHHHHHHHHHHHHHH
Q 003175 676 AAISGDARRALEICRRAAEIA 696 (842)
Q Consensus 676 ~~~~Gd~R~al~ll~~A~~~A 696 (842)
.+.||+|+..+++++|+..+
T Consensus 342 -~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 342 -EWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp -CCTTHHHHHHHHHHHHHHTC
T ss_pred -CCCcHHHHHHHHHHHHHHhC
Confidence 35899999999999988754
No 123
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=9e-11 Score=95.41 Aligned_cols=51 Identities=33% Similarity=0.729 Sum_probs=43.1
Q ss_pred cccccccceeecccccccccCccCC---CccccccCCCCCCCCCCCCcccccccccc
Q 003175 185 DPEVEECRICFRAGRSVMLECDDCL---GGFHLKCLKPPLKEVPEGEWVCEFCEARK 238 (842)
Q Consensus 185 ~~~~~~C~~C~~~~~~~~l~Cd~C~---~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 238 (842)
+++..+| +|+..+++.||+||.|+ .|||+.|++ |...|.+.||||.|....
T Consensus 3 ~~~~~yC-~C~~~~~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 3 SGSSGYC-ICNQVSYGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CSCCCCS-TTSCCCCSSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHH
T ss_pred CCCCeEE-EcCCCCCCCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCccc
Confidence 3455699 79987667899999975 899999999 888999999999997643
No 124
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.92 E-value=2.5e-10 Score=102.97 Aligned_cols=53 Identities=40% Similarity=0.879 Sum_probs=46.9
Q ss_pred cccccceeecccc-cccccCccCCCccccccCCCCCCCCCCCCccccccccccc
Q 003175 187 EVEECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARKL 239 (842)
Q Consensus 187 ~~~~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 239 (842)
+..+|.+|+..++ +.||+||.|+++||++|++|||..+|+++|+|+.|.....
T Consensus 53 ~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 53 ECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIS 106 (111)
T ss_dssp TTCCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSC
T ss_pred cCCcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcCC
Confidence 3457889998876 7899999999999999999999999999999999977553
No 125
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.84 E-value=2.7e-10 Score=105.21 Aligned_cols=53 Identities=30% Similarity=0.723 Sum_probs=46.8
Q ss_pred ccccccccceeecccccccccCccCCCccccccCCCCCCC-------CCCCCcccccccccc
Q 003175 184 EDPEVEECRICFRAGRSVMLECDDCLGGFHLKCLKPPLKE-------VPEGEWVCEFCEARK 238 (842)
Q Consensus 184 ~~~~~~~C~~C~~~~~~~~l~Cd~C~~~~H~~C~~p~l~~-------~p~~~W~C~~C~~~~ 238 (842)
++.++++|.+|+.+|+ +|+||.|++.||..|++|+|.. .|+++|+|+.|..+.
T Consensus 59 ~Dg~~d~C~vC~~GG~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~p 118 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEP 118 (142)
T ss_dssp TTSCBCSCSSSCCCSS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCT
T ss_pred CCCCCCeecccCCCCc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCcc
Confidence 3556779999999998 9999999999999999999862 589999999998765
No 126
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.80 E-value=1.2e-09 Score=88.33 Aligned_cols=53 Identities=28% Similarity=0.615 Sum_probs=42.8
Q ss_pred Cccccccccceeecccc-cccccCccCCCccccccCCCCCCCCCCCCccccccccc
Q 003175 183 EEDPEVEECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEAR 237 (842)
Q Consensus 183 ~~~~~~~~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 237 (842)
..+.+..+| +|+...+ +.||+||.|..|||..|++.....+| +.|+|+.|...
T Consensus 14 ~~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~s 67 (68)
T 3o70_A 14 LYFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRDS 67 (68)
T ss_dssp CTTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHTC
T ss_pred CCCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCCC
Confidence 445567799 9998866 67999999999999999996544444 69999999754
No 127
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.77 E-value=2.8e-08 Score=131.87 Aligned_cols=164 Identities=19% Similarity=0.223 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHH
Q 003175 468 EMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEAL 547 (842)
Q Consensus 468 e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l 547 (842)
+..+...++..++.. ++++||+||||||||++|+.++..+ +.+.++.+|+...++...+...+...+
T Consensus 1252 DT~R~~~ll~~~l~~----~~~vLL~GPpGtGKT~la~~~l~~~---------~~~~~~~infsa~ts~~~~~~~i~~~~ 1318 (2695)
T 4akg_A 1252 DTIKHEKIFYDLLNS----KRGIILCGPPGSGKTMIMNNALRNS---------SLYDVVGINFSKDTTTEHILSALHRHT 1318 (2695)
T ss_dssp HHHHHHHHHHHHHHH----TCEEEEECSTTSSHHHHHHHHHHSC---------SSCEEEEEECCTTCCHHHHHHHHHHHB
T ss_pred chHHHHHHHHHHHHC----CCeEEEECCCCCCHHHHHHHHHhcC---------CCCceEEEEeecCCCHHHHHHHHHHHh
Confidence 334445555555543 5789999999999999997776543 126788999998887654444333222
Q ss_pred hCCCCCHHHHHHHHHHHhhcccCCCC-CCCCcEEEEEecCcccccCC------hHHHHHhhcCCC---CCC------CcE
Q 003175 548 SGHRVSWKKALHSLNERFLDGKKIGK-EDDRPCILLIDELDLLVTRN------QSVLYNILDWPT---KPN------SKL 611 (842)
Q Consensus 548 ~g~~~~~~~~~~~L~~~f~~~~~~~~-~~~~~~IlilDEid~L~~~~------~~~L~~ll~~~~---~~~------~~v 611 (842)
.... ...+.-.+. ..++.+||||||++...... .++|.++++... ... .++
T Consensus 1319 ~~~~-------------~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i 1385 (2695)
T 4akg_A 1319 NYVT-------------TSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERI 1385 (2695)
T ss_dssp CCEE-------------ETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESE
T ss_pred hhcc-------------ccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCE
Confidence 1000 000000001 12466899999998755432 367888877421 111 358
Q ss_pred EEEEEeCCCC--CccccchhhhccCCceeEEecCCCHHHHHHHHHHHhcC
Q 003175 612 IVIGIANTMD--LPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLKG 659 (842)
Q Consensus 612 ivI~~tn~~d--l~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~~ 659 (842)
.|||++|.+. -...+++++.+|| ..|.++.++.+++..|+...+..
T Consensus 1386 ~lIaA~Npp~~gGR~~l~~rllRrf--~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1386 HIVGACNPPTDPGRIPMSERFTRHA--AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEEEEECCTTSTTCCCCCHHHHTTE--EEEECCCCTTTHHHHHHHHHHHH
T ss_pred EEEEecCCCccCCCccCChhhhhee--eEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999863 2246889999999 56999999999999999988864
No 128
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=98.76 E-value=3.3e-09 Score=128.62 Aligned_cols=98 Identities=18% Similarity=0.254 Sum_probs=81.7
Q ss_pred hhhhhhhhceeeccCCc-------eEEEEEeecCCcccccCCCCCcc--cccccccCCccccccchhccceeeeCccccc
Q 003175 266 DLWAANIQSMWKEVDGN-------YWCRVFWYMIPEETAAGRQPHNL--RRELYRTNDFANIEMESIIRHCSVMSPKDFV 336 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~g~-------~~~~~~w~~~peEt~~~~~~~~~--~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~ 336 (842)
.++||+|.+||....+. .+++|+|||||++|+++....++ .||||.|++.+.+++++|.|||.|+..++|.
T Consensus 392 P~~IgrI~~i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~ 471 (1002)
T 3swr_A 392 PYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLP 471 (1002)
T ss_dssp CCEEEEEEEEEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCS
T ss_pred CceeeEEeEEEecCCccccCCCccEEEEEEEEECcccccccccccccCCcceEEEecceeccCHHHcceEEEEEEecccc
Confidence 56799999999876655 89999999999999876554444 5999999999999999999999999999998
Q ss_pred cccc----CCCCEEEEeeEEecCccceeecc
Q 003175 337 KAND----QGDDIFLCEYEYDIHWHSFKRIA 363 (842)
Q Consensus 337 ~~~~----~~~~~~~C~~~y~~~~~~fk~i~ 363 (842)
.... .+.+.|||...||...++|+.+.
T Consensus 472 ~~~~~~~~~~p~~fyf~~~Yd~~~~~f~~~p 502 (1002)
T 3swr_A 472 ECVQVYSMGGPNRFYFLEAYNAKSKSFEDPP 502 (1002)
T ss_dssp SCHHHHHHTSSSEEEEEEEEETTTTEEECCC
T ss_pred ccchhhccCCCCeEEEEEEEeCCCCeeecCc
Confidence 6554 24355555599999999999876
No 129
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.75 E-value=4.1e-09 Score=100.57 Aligned_cols=105 Identities=15% Similarity=0.227 Sum_probs=73.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
+..++|+||+|+|||+|+++++..+... + ..++++++..+... .|.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~---g----~~~~~~~~~~~~~~---------------------------~~~ 81 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA---G----KNAAYIDAASMPLT---------------------------DAA 81 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT---T----CCEEEEETTTSCCC---------------------------GGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc---C----CcEEEEcHHHhhHH---------------------------HHH
Confidence 6889999999999999999999988642 1 45888988775542 010
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC-CCCccccchhhhccCCc
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT-MDLPEKLLPRISSRMGV 636 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~-~dl~~~l~~~l~sR~~~ 636 (842)
..+.||||||++.+....+..|+.+++.....+..++|| ++|. +.....+ +++.||+..
T Consensus 82 ---------~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iii-ts~~~p~~l~~~-~~L~SRl~~ 141 (149)
T 2kjq_A 82 ---------FEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLL-GSEYTPQQLVIR-EDLRTRMAY 141 (149)
T ss_dssp ---------GGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEE-EESSCTTTSSCC-HHHHHHGGG
T ss_pred ---------hCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEE-ECCCCHHHcccc-HHHHHHHhc
Confidence 145799999999987656888888887443222332444 6663 3333444 899999864
No 130
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.72 E-value=1.9e-08 Score=111.18 Aligned_cols=222 Identities=15% Similarity=0.034 Sum_probs=131.7
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCc---ccCCeEEEEcCCCChHHHHHHHH-HHHHHHHhhcCCCCCceEEEEecccCCChH
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQ---CLGRCLYIHGVPGTGKTMSVLAV-MRSLRSEVESGSIRPYCFVEVNGLKLASPE 537 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~---~~~~~ili~GppGtGKT~l~~~v-~~~l~~~~~~~~~~~~~~v~in~~~~~s~~ 537 (842)
+.|.+.....|.-.+ -++. ...-++||.|+||| ||.+++++ ++.+. +.+++.+.. .+..
T Consensus 215 I~G~e~vK~aLll~L----~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~p-----------R~~ft~g~~-ss~~ 277 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL----FSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAP-----------RGVYVDLRR-TELT 277 (506)
T ss_dssp STTCHHHHHHHHHHH----TTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCS-----------SEEEEEGGG-CCHH
T ss_pred cCCCHHHHHHHHHHH----cCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCC-----------CeEEecCCC-CCcc
Confidence 778877544443333 2220 01128999999999 99999999 55432 134444332 2211
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC------CCCCcE
Q 003175 538 NIYRVIYEALSGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT------KPNSKL 611 (842)
Q Consensus 538 ~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~------~~~~~v 611 (842)
.+...+... .| . .+.. ..+. + ....|++|||++.+..+.|..|+..|+... .-..++
T Consensus 278 gLt~s~r~~-tG-~-~~~~--G~l~--L----------AdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf 340 (506)
T 3f8t_A 278 DLTAVLKED-RG-W-ALRA--GAAV--L----------ADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARC 340 (506)
T ss_dssp HHSEEEEES-SS-E-EEEE--CHHH--H----------TTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCC
T ss_pred CceEEEEcC-CC-c-ccCC--CeeE--E----------cCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCe
Confidence 110000000 01 0 0000 0000 0 123699999999998888999999987431 124578
Q ss_pred EEEEEeCCCCCc--------cccchhhhccCCceeEEec-------------CCCHHHHHHHHHHHh-cC-cccCcHHHH
Q 003175 612 IVIGIANTMDLP--------EKLLPRISSRMGVQRLCFG-------------PYNHQQLQEIISSRL-KG-IEAFEKQAI 668 (842)
Q Consensus 612 ivI~~tn~~dl~--------~~l~~~l~sR~~~~~i~f~-------------p~~~~e~~~Il~~~l-~~-~~~~~~~~l 668 (842)
.||+++|..... -.|.+.+.+||+...+... .++.+++.+++...- .. ...+++++.
T Consensus 341 ~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~ 420 (506)
T 3f8t_A 341 AVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEAR 420 (506)
T ss_dssp EEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHH
T ss_pred EEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHH
Confidence 999999986411 1567799999985333222 244555555554332 11 346788888
Q ss_pred HHHHHHHHHH--------------hc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHHHHHh
Q 003175 669 EFASRKVAAI--------------SG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAIQEMF 730 (842)
Q Consensus 669 ~~ia~~~~~~--------------~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~~~~~ 730 (842)
+++.+.+... .| .+|..+.+++.|-..|..+ ++..|+.+||..|+.-+.
T Consensus 421 ~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~-------------gR~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 421 KRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMR-------------LSDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHT-------------TCSEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHc-------------CcCCCCHHHHHHHHHHHH
Confidence 8777655321 12 5788888888888888776 468999999999987443
No 131
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.71 E-value=1.9e-08 Score=99.16 Aligned_cols=104 Identities=17% Similarity=0.221 Sum_probs=61.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
+..++|+||+|||||+|+++++..+.... + ..++++++.. +...+...+...... ..+. .+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~--g----~~~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~-~~~ 99 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKK--G----IRGYFFDTKD------LIFRLKHLMDEGKDT-----KFLK-TVL 99 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHS--C----CCCCEEEHHH------HHHHHHHHHHHTCCS-----HHHH-HHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHc--C----CeEEEEEHHH------HHHHHHHHhcCchHH-----HHHH-Hhc
Confidence 68899999999999999999999986331 1 2355555433 233333332211111 1111 121
Q ss_pred cccCCCCCCCCcEEEEEecCccc--ccCChHHHHHhhcCCCCCCCcEEEEEEeCCC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLL--VTRNQSVLYNILDWPTKPNSKLIVIGIANTM 620 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L--~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~ 620 (842)
.+.+|||||++.. ....+..|+.+++.... ....+|.+||..
T Consensus 100 ----------~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~--~~~~ii~tsn~~ 143 (180)
T 3ec2_A 100 ----------NSPVLVLDDLGSERLSDWQRELISYIITYRYN--NLKSTIITTNYS 143 (180)
T ss_dssp ----------TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH--TTCEEEEECCCC
T ss_pred ----------CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 4579999999854 33345678888764321 223455577764
No 132
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=98.67 E-value=5.5e-09 Score=129.68 Aligned_cols=97 Identities=19% Similarity=0.280 Sum_probs=82.5
Q ss_pred hhhhhhhhceeeccC------CceEEEEEeecCCcccccCC--CCCcccccccccCCccccccchhccceeeeCcccccc
Q 003175 266 DLWAANIQSMWKEVD------GNYWCRVFWYMIPEETAAGR--QPHNLRRELYRTNDFANIEMESIIRHCSVMSPKDFVK 337 (842)
Q Consensus 266 ~~~~~~I~~i~~~~~------g~~~~~~~w~~~peEt~~~~--~~~~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~ 337 (842)
.++||+|.+||...+ ++.|++|+|||||+||.++. ...+..||||.|++.+++++++|.|||.|+...+|..
T Consensus 704 Py~IgqI~eI~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~ 783 (1330)
T 3av4_A 704 PYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLE 783 (1330)
T ss_dssp CCEEEEEEECCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSS
T ss_pred CceEEEEEEEEecCCccccCCCceEEEEEEeeChhhcccccccccccCcceEEeeccceecCHHHcCceEEEEecccccc
Confidence 468999999998755 68999999999999998763 2355689999999999999999999999998888876
Q ss_pred c---ccC-CCCEEEEeeEEecCccceeec
Q 003175 338 A---NDQ-GDDIFLCEYEYDIHWHSFKRI 362 (842)
Q Consensus 338 ~---~~~-~~~~~~C~~~y~~~~~~fk~i 362 (842)
. +.. +.++|||++.||...++|+.+
T Consensus 784 ~i~~y~~~g~d~Fy~~~~Yd~~~k~~~~~ 812 (1330)
T 3av4_A 784 SIQDYSQGGPDRFYFLEAYNSKTKNFEDP 812 (1330)
T ss_dssp CHHHHHHTSTTEEEESCEEETTTTEEECC
T ss_pred cccccccCCCCeEEEEEEecccCCeeccC
Confidence 4 222 469999999999999998643
No 133
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=98.67 E-value=4e-09 Score=85.62 Aligned_cols=52 Identities=27% Similarity=0.673 Sum_probs=39.7
Q ss_pred ccccccccceeecccc-cccccCcc--CCCccccccCCCCCCCCCC------CCcccccccccc
Q 003175 184 EDPEVEECRICFRAGR-SVMLECDD--CLGGFHLKCLKPPLKEVPE------GEWVCEFCEARK 238 (842)
Q Consensus 184 ~~~~~~~C~~C~~~~~-~~~l~Cd~--C~~~~H~~C~~p~l~~~p~------~~W~C~~C~~~~ 238 (842)
++++..+| +|+...+ +.||+||+ |..|||..|++ +...|. ..|+|+.|+..+
T Consensus 6 ~~e~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvg--i~~~~~~~~~~p~~~~C~~Cr~~r 66 (68)
T 2rsd_A 6 QPEAKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVL--IPDKPGESAEVPPVFYCELCRLSR 66 (68)
T ss_dssp CSSCEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSC--CCSSTTSCCCCCSSCCCHHHHHHH
T ss_pred CCCCCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCC--CCcccccccCCCCcEECcCccCcc
Confidence 34456789 8988755 78999995 99999999999 443332 369999998653
No 134
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.67 E-value=6.7e-09 Score=85.44 Aligned_cols=55 Identities=22% Similarity=0.396 Sum_probs=42.3
Q ss_pred Cccccccccceeecccc--cccccCccCCCccccccCCCCCCCCCCCCcccccccccc
Q 003175 183 EEDPEVEECRICFRAGR--SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEARK 238 (842)
Q Consensus 183 ~~~~~~~~C~~C~~~~~--~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 238 (842)
.++.+..+| +|+...+ ..||+||.|..|||..|++..........|+|+.|..+.
T Consensus 11 ~~~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 11 GVDNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SSCSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CCCCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 345566799 8998753 479999999999999999944222234799999998765
No 135
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.65 E-value=2.2e-09 Score=89.40 Aligned_cols=52 Identities=29% Similarity=0.674 Sum_probs=42.2
Q ss_pred ccccccccceeecccc-cccccCccCCCccccccCCCCCCCC-------CCCCcccccccccc
Q 003175 184 EDPEVEECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEV-------PEGEWVCEFCEARK 238 (842)
Q Consensus 184 ~~~~~~~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~-------p~~~W~C~~C~~~~ 238 (842)
.+.+..+| +|+...+ +.||+||.|..|||..|++ |... +...|+|+.|..+.
T Consensus 12 ~d~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvg--l~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 12 YDPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVG--ISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCTTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHS--CCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred cCCCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEc--cchhhhhhccCCCCeEECcCCcCcc
Confidence 34456799 8999876 6899999999999999999 5443 24689999998765
No 136
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=98.65 E-value=2.2e-08 Score=93.36 Aligned_cols=95 Identities=14% Similarity=0.265 Sum_probs=72.2
Q ss_pred hhhhhhhhceeec---cCCceEEEEEeecCCcccccCCCCCcc----cccccccCCcc---ccccchhccceeeeCcccc
Q 003175 266 DLWAANIQSMWKE---VDGNYWCRVFWYMIPEETAAGRQPHNL----RRELYRTNDFA---NIEMESIIRHCSVMSPKDF 335 (842)
Q Consensus 266 ~~~~~~I~~i~~~---~~g~~~~~~~w~~~peEt~~~~~~~~~----~~Evf~s~~~d---~~~~~~I~~kc~V~~~~~y 335 (842)
+.|+|+|.+|+++ ....+-+.|+||+||+|...+++.... .+|+|.+++.+ .+.+++|+++|.|+..+.|
T Consensus 54 ~PyVAki~~lye~~~e~~~~k~A~VQWy~R~~EiP~~k~~l~g~~~~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~ 133 (163)
T 4dov_A 54 KPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPE 133 (163)
T ss_dssp CCEEEEEEEEEEETTSSSCEEEEEEEEEEEGGGSCTTTGGGGCSCCCTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTT
T ss_pred CChhHHHHHHHhccccCCCceEEEEEeeechhhccccchhhccCCCCCCeEEEecCCCCcccccHHHeeeceEEEEcCCc
Confidence 4589999999885 334788999999999998766544332 56999988885 6789999999999977655
Q ss_pred ccc--ccCCCCEEEEeeEEecCccceeec
Q 003175 336 VKA--NDQGDDIFLCEYEYDIHWHSFKRI 362 (842)
Q Consensus 336 ~~~--~~~~~~~~~C~~~y~~~~~~fk~i 362 (842)
... .....++||-++.+| -+.|+.+
T Consensus 134 e~~p~~~~~e~t~FvklsWd--~k~f~pl 160 (163)
T 4dov_A 134 EVIPVDQKSEETLFVKLSWN--KKDFAPL 160 (163)
T ss_dssp CCCCSSCCCCSEEEEEEEEC--SSCEEEC
T ss_pred cccCCCcccceEEEEEEEec--CCcceeC
Confidence 543 445688999777764 4556554
No 137
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.65 E-value=6.5e-09 Score=83.54 Aligned_cols=54 Identities=22% Similarity=0.434 Sum_probs=41.7
Q ss_pred cccccccceeecccc--cccccCccCCCccccccCCCCCCCCC-CCCcccccccccc
Q 003175 185 DPEVEECRICFRAGR--SVMLECDDCLGGFHLKCLKPPLKEVP-EGEWVCEFCEARK 238 (842)
Q Consensus 185 ~~~~~~C~~C~~~~~--~~~l~Cd~C~~~~H~~C~~p~l~~~p-~~~W~C~~C~~~~ 238 (842)
+++..+|.+|+...+ +.||+||.|..|||..|++....... ...|+|+.|..+.
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 345568999998753 67999999999999999994322222 2689999998765
No 138
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.64 E-value=6.6e-09 Score=86.81 Aligned_cols=52 Identities=23% Similarity=0.586 Sum_probs=42.2
Q ss_pred ccccccccceeecccc-cccccCc--cCCCccccccCCCCCCCCCC-------CCcccccccccc
Q 003175 184 EDPEVEECRICFRAGR-SVMLECD--DCLGGFHLKCLKPPLKEVPE-------GEWVCEFCEARK 238 (842)
Q Consensus 184 ~~~~~~~C~~C~~~~~-~~~l~Cd--~C~~~~H~~C~~p~l~~~p~-------~~W~C~~C~~~~ 238 (842)
++++..+| +|+..++ +.||+|| .|..|||..|++ |...+. ..|+|+.|....
T Consensus 12 ~~~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVg--i~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 12 QPEIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVI--LPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp SCCCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHS--CCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEc--cccccccccccCCCCEECCCCCccc
Confidence 34567799 8999844 8899999 999999999999 555442 589999998754
No 139
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.63 E-value=1.4e-09 Score=98.59 Aligned_cols=54 Identities=31% Similarity=0.768 Sum_probs=46.5
Q ss_pred ccccccccceeecccccccccCccCCCccccccCCCCCC-----CC--CCCCccccccccccc
Q 003175 184 EDPEVEECRICFRAGRSVMLECDDCLGGFHLKCLKPPLK-----EV--PEGEWVCEFCEARKL 239 (842)
Q Consensus 184 ~~~~~~~C~~C~~~~~~~~l~Cd~C~~~~H~~C~~p~l~-----~~--p~~~W~C~~C~~~~~ 239 (842)
++.++.+|.+|+++|+ +++||.|+++||..|+.|++. ++ |.++|+|+.|..+..
T Consensus 53 ~Dg~~~~C~vC~dGG~--LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 53 SDGMDEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp TTSCBSSCTTTCCCSE--EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred CCCCCCcCeecCCCCe--eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 4556779999999998 999999999999999998853 44 889999999987654
No 140
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=98.59 E-value=7.9e-09 Score=79.04 Aligned_cols=47 Identities=32% Similarity=0.773 Sum_probs=38.2
Q ss_pred ccccceeecccc-cccccCccCCCccccccCCCCCCCCCCCCcccccccc
Q 003175 188 VEECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCEA 236 (842)
Q Consensus 188 ~~~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 236 (842)
..+| +|+...+ +.||.||.|..|||..|++.....+| +.|+|+.|..
T Consensus 4 ~~~C-~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~~ 51 (52)
T 3o7a_A 4 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 51 (52)
T ss_dssp CBCS-TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHHT
T ss_pred CeEE-EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCCC
Confidence 4589 8998766 58999999999999999995433344 6899999964
No 141
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=98.59 E-value=6.2e-09 Score=126.53 Aligned_cols=99 Identities=13% Similarity=0.285 Sum_probs=77.7
Q ss_pred hhhhhhhceeeccCCceEEEEEeecCCcccccCC------CCCcc-cccccccCCccccccchhccceeeeCcccccc--
Q 003175 267 LWAANIQSMWKEVDGNYWCRVFWYMIPEETAAGR------QPHNL-RRELYRTNDFANIEMESIIRHCSVMSPKDFVK-- 337 (842)
Q Consensus 267 ~~~~~I~~i~~~~~g~~~~~~~w~~~peEt~~~~------~~~~~-~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~-- 337 (842)
.+||+|.+||+..+|+.+++|+|||||++|+.+. ..+.+ .+|||+|++.++|++++|++||.|+.......
T Consensus 74 ~~i~~i~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~d~~~~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~ 153 (784)
T 4ft4_B 74 DYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPK 153 (784)
T ss_dssp CEEEEEEEEEEETTSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCCCTTBEEEEEEEEEEEGGGEEEECCEEECCTTSCHH
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEeeChhhhcccccccccccccccccceEEEeCcEEEechHHeeeeEEEEeeCccccch
Confidence 4689999999999999999999999999998543 12222 79999999999999999999999985543222
Q ss_pred --cccCCCCEEEEeeEEecCccceeecccC
Q 003175 338 --ANDQGDDIFLCEYEYDIHWHSFKRIADI 365 (842)
Q Consensus 338 --~~~~~~~~~~C~~~y~~~~~~fk~i~~~ 365 (842)
.+....+.|||++.|...+..|..+...
T Consensus 154 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 183 (784)
T 4ft4_B 154 AKAQLIESCDLYYDMSYSVAYSTFANISSE 183 (784)
T ss_dssp HHHHHHHHCSEEESEEEETGGGEEEEC---
T ss_pred hhhhccCCcceEeccccCccccCccCCCcc
Confidence 1122356799999999999999887643
No 142
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.59 E-value=1.7e-08 Score=90.85 Aligned_cols=50 Identities=22% Similarity=0.588 Sum_probs=45.0
Q ss_pred ccccccceeecccc-cccccCccCCCccccccCCCCCCCCCCCCccccccc
Q 003175 186 PEVEECRICFRAGR-SVMLECDDCLGGFHLKCLKPPLKEVPEGEWVCEFCE 235 (842)
Q Consensus 186 ~~~~~C~~C~~~~~-~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~ 235 (842)
.++++|.+|+.+|+ +.||+|+.|++.||+.|+++++..++.+.|+|+.|.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 45669999999987 668999999999999999999888888999999995
No 143
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.56 E-value=4.8e-08 Score=98.06 Aligned_cols=101 Identities=24% Similarity=0.312 Sum_probs=56.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhc
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLD 567 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~ 567 (842)
.+++|+||+|||||++++++++.+.... ..++++++..+ ...+...+... ...... ..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~-------~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~----~~~~- 114 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN-------VSSLIVYVPEL------FRELKHSLQDQ--TMNEKL----DYIK- 114 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT-------CCEEEEEHHHH------HHHHHHC---C--CCHHHH----HHHH-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC-------CeEEEEEhHHH------HHHHHHHhccc--hHHHHH----HHhc-
Confidence 7899999999999999999999886431 45777876532 22222221111 111111 1221
Q ss_pred ccCCCCCCCCcEEEEEecCcccccC--ChH-HHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 568 GKKIGKEDDRPCILLIDELDLLVTR--NQS-VLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 568 ~~~~~~~~~~~~IlilDEid~L~~~--~~~-~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
...+|||||++.+... .+. +|+.+++...... ..+|.+||.
T Consensus 115 ---------~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~--~~~i~tsn~ 158 (202)
T 2w58_A 115 ---------KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFEN--LPTFFTSNF 158 (202)
T ss_dssp ---------HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTT--CCEEEEESS
T ss_pred ---------CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCC--CCEEEEcCC
Confidence 2259999999775432 344 4555665321112 245557775
No 144
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=98.45 E-value=9.4e-09 Score=82.08 Aligned_cols=48 Identities=27% Similarity=0.626 Sum_probs=38.6
Q ss_pred ccccccceeecccc--cccccCc-cCCCccccccCCCCCCC--------CCCCCccccccc
Q 003175 186 PEVEECRICFRAGR--SVMLECD-DCLGGFHLKCLKPPLKE--------VPEGEWVCEFCE 235 (842)
Q Consensus 186 ~~~~~C~~C~~~~~--~~~l~Cd-~C~~~~H~~C~~p~l~~--------~p~~~W~C~~C~ 235 (842)
+....|.+|+.+.+ ..||+|| .|..|||..|++ |+. -|.+.|+|+.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg--lt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG--MTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT--CCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC--CCHHHHHHhhccCCCcEECcCcc
Confidence 34557999998743 6899999 999999999999 664 377799999996
No 145
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=98.45 E-value=1.9e-08 Score=83.33 Aligned_cols=51 Identities=27% Similarity=0.592 Sum_probs=40.5
Q ss_pred cccccccceeecccc--cccccCccCCCccccccCCCCCCCCC--C-CCcccccccccc
Q 003175 185 DPEVEECRICFRAGR--SVMLECDDCLGGFHLKCLKPPLKEVP--E-GEWVCEFCEARK 238 (842)
Q Consensus 185 ~~~~~~C~~C~~~~~--~~~l~Cd~C~~~~H~~C~~p~l~~~p--~-~~W~C~~C~~~~ 238 (842)
+.+..+| +|+...+ +.||+||.|..|||..|++ +...+ . ..|+|+.|....
T Consensus 7 ~~~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg--~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 7 ATVPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVG--VEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp CCCCEET-TTTEECCTTSCEEECTTTCCEEEHHHHT--CCTTTGGGBSSCCCHHHHHHH
T ss_pred CCCeeEE-ECCCcCCCCCCEEEcCCCCCCEeccccc--ccccccCCCCEEECCCCcccC
Confidence 3455689 9998743 6899999999999999999 54443 2 579999998754
No 146
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=98.41 E-value=3.1e-08 Score=87.49 Aligned_cols=48 Identities=25% Similarity=0.675 Sum_probs=39.9
Q ss_pred cccceeecc--cccccccCc-cCCCccccccCCCCCCC--------CCCCCcccccccccc
Q 003175 189 EECRICFRA--GRSVMLECD-DCLGGFHLKCLKPPLKE--------VPEGEWVCEFCEARK 238 (842)
Q Consensus 189 ~~C~~C~~~--~~~~~l~Cd-~C~~~~H~~C~~p~l~~--------~p~~~W~C~~C~~~~ 238 (842)
..|.+|+.. +++.||.|| .|+.|||..|++ |.. -|.+.|+||.|..+.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg--lt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTG--MTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT--CCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCC--cCHHHHHhhccCCCCCEECccccCcC
Confidence 479999988 335689997 999999999999 664 366899999998764
No 147
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.39 E-value=2e-08 Score=84.17 Aligned_cols=50 Identities=28% Similarity=0.504 Sum_probs=40.2
Q ss_pred ccccccceeeccc--ccccccCccCCCccccccCCCCCCCCC---CCCcccccccccc
Q 003175 186 PEVEECRICFRAG--RSVMLECDDCLGGFHLKCLKPPLKEVP---EGEWVCEFCEARK 238 (842)
Q Consensus 186 ~~~~~C~~C~~~~--~~~~l~Cd~C~~~~H~~C~~p~l~~~p---~~~W~C~~C~~~~ 238 (842)
.+..+| +|+... ++.||+||.|..|||..|++ |...+ ...|+|+.|....
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvg--l~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVG--IEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHT--CCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecC--cccccccCCCeEECCCccccc
Confidence 345689 999975 37899999999999999999 54332 3689999998754
No 148
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.35 E-value=1.1e-05 Score=107.29 Aligned_cols=146 Identities=16% Similarity=0.018 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHH
Q 003175 468 EMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEAL 547 (842)
Q Consensus 468 e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l 547 (842)
..++....+..++.. +.++++.||+|||||.+++.+++.++ ..++.+||....+...+- ..+
T Consensus 630 ltdr~~~tl~~Al~~----~~~~~l~GpaGtGKTe~vk~LA~~lg----------~~~v~~nc~e~ld~~~lg----~~~ 691 (2695)
T 4akg_A 630 LLLIGFATLTDSLHQ----KYGGCFFGPAGTGKTETVKAFGQNLG----------RVVVVFNCDDSFDYQVLS----RLL 691 (2695)
T ss_dssp HHHHHHHHHHHHHHT----TCEEEEECCTTSCHHHHHHHHHHTTT----------CCCEEEETTSSCCHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHh----CCCCcccCCCCCCcHHHHHHHHHHhC----------CcEEEEECCCCCChhHhh----HHH
Confidence 445556666666654 45678999999999999999999998 458999999988764332 111
Q ss_pred hCCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhh----c----CC---C------CCCCc
Q 003175 548 SGHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNIL----D----WP---T------KPNSK 610 (842)
Q Consensus 548 ~g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll----~----~~---~------~~~~~ 610 (842)
..... ...++++||++.+.....++|...+ + .. . .-+..
T Consensus 692 --------------~g~~~----------~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~ 747 (2695)
T 4akg_A 692 --------------VGITQ----------IGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPH 747 (2695)
T ss_dssp --------------HHHHH----------HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTT
T ss_pred --------------HHHHh----------cCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCC
Confidence 11111 2379999999998765444442211 1 00 0 11234
Q ss_pred EEEEEEeCCCC-CccccchhhhccCCceeEEecCCCHHHHHHHHHHHh
Q 003175 611 LIVIGIANTMD-LPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRL 657 (842)
Q Consensus 611 vivI~~tn~~d-l~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l 657 (842)
+.|+++.|.-- -...|...+++|| +.|.+..++.+.+.+|+....
T Consensus 748 ~~vfiT~NPgy~g~~eLP~~Lk~~F--r~v~m~~Pd~~~i~ei~l~s~ 793 (2695)
T 4akg_A 748 TAVFITLNPGYNGRSELPENLKKSF--REFSMKSPQSGTIAEMILQIM 793 (2695)
T ss_dssp CEEEEEECCCSSSSCCCCHHHHTTE--EEEECCCCCHHHHHHHHHHHH
T ss_pred ceEEEEeCCCccCcccccHHHHhhe--EEEEeeCCCHHHHHHHHHHhc
Confidence 56676777421 1234566888999 469999999999999875543
No 149
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.34 E-value=9.4e-06 Score=95.30 Aligned_cols=166 Identities=16% Similarity=0.111 Sum_probs=95.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH-HhhcCCCCCceEEEEecccCCCh
Q 003175 458 LPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS-EVESGSIRPYCFVEVNGLKLASP 536 (842)
Q Consensus 458 ~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~-~~~~~~~~~~~~v~in~~~~~s~ 536 (842)
.|..++||+.++++|...+... .+ ..+.+.|+|++|+|||+||..+++.... ...- + ..++.++.... +.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~--~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f---~-~~v~wv~~~~~-~~ 192 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL--KG--EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCF---P-GGVHWVSVGKQ-DK 192 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS--TT--SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHC---T-TCEEEEEEESC-CH
T ss_pred CCCeecccHHHHHHHHHHHhcc--cC--CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhC---C-CceEEEECCCC-ch
Confidence 4567999999999999988652 12 2578999999999999999999875421 1100 0 12455554433 33
Q ss_pred HHHHHHHHH---HHhC-------CCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCC
Q 003175 537 ENIYRVIYE---ALSG-------HRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTK 606 (842)
Q Consensus 537 ~~~~~~i~~---~l~g-------~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~ 606 (842)
..+...+.. .+.. ...........|...+... .++.+||||+++.. .. +++. .
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~LLVLDdv~~~-----~~----l~~l-~ 255 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRK-------HPRSLLILDDVWDS-----WV----LKAF-D 255 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHT-------CTTCEEEEEEECCH-----HH----HHTT-C
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccC-------CCCeEEEEeCCCCH-----HH----HHHh-c
Confidence 344444433 3321 0123344455555555321 25689999999753 22 2222 1
Q ss_pred CCCcEEEEEEeCCCCCccccchhhhccCCceeEEe---cCCCHHHHHHHHHHHhcC
Q 003175 607 PNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCF---GPYNHQQLQEIISSRLKG 659 (842)
Q Consensus 607 ~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f---~p~~~~e~~~Il~~~l~~ 659 (842)
.+ ..||.||..... ...+. . ..+.+ .+++.++..+++..++..
T Consensus 256 ~~--~~ilvTsR~~~~----~~~~~---~-~~~~v~~l~~L~~~ea~~L~~~~~~~ 301 (591)
T 1z6t_A 256 SQ--CQILLTTRDKSV----TDSVM---G-PKYVVPVESSLGKEKGLEILSLFVNM 301 (591)
T ss_dssp SS--CEEEEEESCGGG----GTTCC---S-CEEEEECCSSCCHHHHHHHHHHHHTS
T ss_pred CC--CeEEEECCCcHH----HHhcC---C-CceEeecCCCCCHHHHHHHHHHHhCC
Confidence 23 344446654211 11111 1 22333 489999999999988754
No 150
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.33 E-value=2.7e-08 Score=97.41 Aligned_cols=53 Identities=25% Similarity=0.543 Sum_probs=40.2
Q ss_pred cccccccceeecccc--cccccCccCCCccccccCCCCCCC-CCCCCcccccccccc
Q 003175 185 DPEVEECRICFRAGR--SVMLECDDCLGGFHLKCLKPPLKE-VPEGEWVCEFCEARK 238 (842)
Q Consensus 185 ~~~~~~C~~C~~~~~--~~~l~Cd~C~~~~H~~C~~p~l~~-~p~~~W~C~~C~~~~ 238 (842)
+++..+| +|+.+++ +.||+||.|+.|||..|++..... ...+.|+|+.|....
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 3456699 9998753 679999999999999999943221 235799999998754
No 151
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.33 E-value=9.6e-06 Score=94.30 Aligned_cols=187 Identities=11% Similarity=0.173 Sum_probs=109.0
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHH----HHHHhhcCCCCCc-eEEEEecccCC--C
Q 003175 463 PCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRS----LRSEVESGSIRPY-CFVEVNGLKLA--S 535 (842)
Q Consensus 463 ~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~----l~~~~~~~~~~~~-~~v~in~~~~~--s 535 (842)
+||+.++++|...|...- .. ..+.+.|+|+.|+|||+||+.+++. +... | ..++++..... +
T Consensus 131 ~GR~~~~~~l~~~L~~~~-~~--~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~--------F~~~~wv~vs~~~~~~ 199 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC-DL--DSFFLFLHGRAGSGKSVIASQALSKSDQLIGIN--------YDSIVWLKDSGTAPKS 199 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT-TS--SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTT--------BSEEEEEECCCCSTTH
T ss_pred CCchHHHHHHHHHHhccc-CC--CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhcc--------CCcEEEEEECCCCCCC
Confidence 499999999999996531 11 2477889999999999999999962 2221 2 24455544432 4
Q ss_pred hHHHHHHHHHHHhCCC----C------CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC
Q 003175 536 PENIYRVIYEALSGHR----V------SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT 605 (842)
Q Consensus 536 ~~~~~~~i~~~l~g~~----~------~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~ 605 (842)
...+...|...+.+.. . ........|.+.+.. ++..+||||+++... .+ .+..
T Consensus 200 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~--------~kr~LlVLDdv~~~~-----~~-~~~~--- 262 (549)
T 2a5y_B 200 TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALID--------RPNTLFVFDDVVQEE-----TI-RWAQ--- 262 (549)
T ss_dssp HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTT--------STTEEEEEEEECCHH-----HH-HHHH---
T ss_pred HHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcC--------CCcEEEEEECCCCch-----hh-cccc---
Confidence 5667777777775431 1 112234455555432 126999999998742 11 1111
Q ss_pred CCCCcEEEEEEeCCCCCccccchhhhccC--CceeEEecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhcCHH
Q 003175 606 KPNSKLIVIGIANTMDLPEKLLPRISSRM--GVQRLCFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISGDAR 683 (842)
Q Consensus 606 ~~~~~vivI~~tn~~dl~~~l~~~l~sR~--~~~~i~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~Gd~R 683 (842)
..+++|+| ||.... + ...+ ....+.+.+++.++-.+++..++..... .++..+.+.+++....|.+-
T Consensus 263 ~~gs~ilv--TTR~~~----v----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPL 331 (549)
T 2a5y_B 263 ELRLRCLV--TTRDVE----I----SNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPA 331 (549)
T ss_dssp HTTCEEEE--EESBGG----G----GGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHH
T ss_pred cCCCEEEE--EcCCHH----H----HHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChH
Confidence 13444444 665421 1 1122 1145889999999999999998643221 12222333444444456553
Q ss_pred HHHHHH
Q 003175 684 RALEIC 689 (842)
Q Consensus 684 ~al~ll 689 (842)
|+.++
T Consensus 332 -Al~~~ 336 (549)
T 2a5y_B 332 -TLMMF 336 (549)
T ss_dssp -HHHHH
T ss_pred -HHHHH
Confidence 44433
No 152
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.27 E-value=1.8e-06 Score=115.40 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHh
Q 003175 469 MEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALS 548 (842)
Q Consensus 469 ~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~ 548 (842)
-.+...++...+.. +.++||+||+|||||+++..++..+. ...++.||+...++...+...+...+.
T Consensus 1290 TvR~~~ll~~ll~~----~~pvLL~GptGtGKT~li~~~L~~l~---------~~~~~~infS~~Tta~~l~~~~e~~~e 1356 (3245)
T 3vkg_A 1290 TTRHVDVLHAWLSE----HRPLILCGPPGSGKTMTLTSTLRAFP---------DFEVVSLNFSSATTPELLLKTFDHHCE 1356 (3245)
T ss_dssp HHHHHHHHHHHHHT----TCCCEEESSTTSSHHHHHHHHGGGCT---------TEEEEEECCCTTCCHHHHHHHHHHHEE
T ss_pred HHHHHHHHHHHHHC----CCcEEEECCCCCCHHHHHHHHHHhCC---------CCceEEEEeeCCCCHHHHHHHHhhcce
Confidence 34444556666654 47799999999999999876665442 266899999998887655554432221
Q ss_pred CCCCCHHHHHHHHHHHhhc--ccCCCCC-CCCcEEEEEecCcccccCC------hHHHHHhhcCC---CC------CCCc
Q 003175 549 GHRVSWKKALHSLNERFLD--GKKIGKE-DDRPCILLIDELDLLVTRN------QSVLYNILDWP---TK------PNSK 610 (842)
Q Consensus 549 g~~~~~~~~~~~L~~~f~~--~~~~~~~-~~~~~IlilDEid~L~~~~------~~~L~~ll~~~---~~------~~~~ 610 (842)
.. ... +.-.+.. .++..||||||++.-.... .++|.++++.. .. .-..
T Consensus 1357 ~~--------------~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d 1422 (3245)
T 3vkg_A 1357 YK--------------RTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDK 1422 (3245)
T ss_dssp EE--------------ECTTSCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESS
T ss_pred EE--------------eccCCCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecC
Confidence 00 000 0000111 2567899999998755431 36677777632 11 1135
Q ss_pred EEEEEEeCCCC--CccccchhhhccCCceeEEecCCCHHHHHHHHHHHhc
Q 003175 611 LIVIGIANTMD--LPEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSRLK 658 (842)
Q Consensus 611 vivI~~tn~~d--l~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~l~ 658 (842)
+.||++.|.+. -...+.+++.+||.. |.++.++.+++..|+...+.
T Consensus 1423 ~~~vaamnPp~~gGr~~l~~Rf~r~F~v--i~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1423 IQFVGACNPPTDAGRVQLTHRFLRHAPI--LLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp EEEEEEECCTTSTTCCCCCHHHHTTCCE--EECCCCCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCCCCccCCHHHHhhceE--EEeCCCCHHHHHHHHHHHHH
Confidence 78999998753 335678999999964 99999999999999877654
No 153
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.23 E-value=9.5e-07 Score=94.77 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH-HHhhcCCCCCceEEEEecc
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR-SEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~-~~~~~~~~~~~~~v~in~~ 531 (842)
+.++||+||||||||+|+.++++.+. ... ..++++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g-------~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG-------VSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC-------CCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC-------CcEEEEEHH
Confidence 57899999999999999999999987 431 457777754
No 154
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=98.23 E-value=1.2e-07 Score=72.44 Aligned_cols=43 Identities=23% Similarity=0.602 Sum_probs=34.0
Q ss_pred cceeecccc--cccccCc-cCCCccccccCCCCCCCCC--CCCccccccc
Q 003175 191 CRICFRAGR--SVMLECD-DCLGGFHLKCLKPPLKEVP--EGEWVCEFCE 235 (842)
Q Consensus 191 C~~C~~~~~--~~~l~Cd-~C~~~~H~~C~~p~l~~~p--~~~W~C~~C~ 235 (842)
|-+|+.+.+ +.||.|| .|+.|||..|++ |...+ ...|+|+.|.
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvg--l~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVG--VSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTTT--CCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccccC--CCccccCCCCEECCCCC
Confidence 447888753 6799999 899999999999 55432 3789999994
No 155
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.22 E-value=1.4e-06 Score=86.00 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=28.8
Q ss_pred HHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 473 TAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 473 ~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
...|...+.+ .+..++++|+||||||||+++.++++.+.
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444443 22246899999999999999999999885
No 156
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.15 E-value=2.5e-05 Score=99.71 Aligned_cols=170 Identities=14% Similarity=0.079 Sum_probs=98.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCCh-
Q 003175 458 LPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASP- 536 (842)
Q Consensus 458 ~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~- 536 (842)
.+..++||++++++|.+.|... .+ ..+.+.|+|+.|+|||+||+.+++....... ..+ -.++.++.......
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~--~~--~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~--~~~-~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKL--NG--EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEG--CFS-GGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTT--TT--SCEEEEEECSTTSSHHHHHHHHTCCHHHHTT--TST-TCEEEEECCSCCHHH
T ss_pred CCceeccHHHHHHHHHHHHhhc--cC--CCCEEEEEeCCCCCHHHHHHHHhcChhHHHh--hCC-CeEEEEEECCcCchH
Confidence 3456999999999999998642 12 2467889999999999999998876432111 001 12445554442221
Q ss_pred -HHHHHHHHHHHhCCC-------CCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCC
Q 003175 537 -ENIYRVIYEALSGHR-------VSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPN 608 (842)
Q Consensus 537 -~~~~~~i~~~l~g~~-------~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~ 608 (842)
...+..+...+.... .........|...+.. +.+..+||||+++.. ..|.. . .++
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~LlvlDd~~~~-----~~~~~----~-~~~ 257 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLR-------KHPRSLLILDDVWDP-----WVLKA----F-DNQ 257 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSS-------SSCSCEEEEESCCCH-----HHHTT----T-CSS
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhc-------cCCCEEEEEecCCCH-----HHHHh----h-cCC
Confidence 222344455553321 2234444455544422 234689999999864 22211 1 234
Q ss_pred CcEEEEEEeCCCCCccccchhhhccCCceeEEecC-CCHHHHHHHHHHHhcC
Q 003175 609 SKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGP-YNHQQLQEIISSRLKG 659 (842)
Q Consensus 609 ~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p-~~~~e~~~Il~~~l~~ 659 (842)
++ ||.||....+...+. .. ...+.+++ ++.++-.+++..++..
T Consensus 258 ~~--ilvTtR~~~~~~~~~----~~--~~~~~~~~~l~~~~a~~l~~~~~~~ 301 (1249)
T 3sfz_A 258 CQ--ILLTTRDKSVTDSVM----GP--KHVVPVESGLGREKGLEILSLFVNM 301 (1249)
T ss_dssp CE--EEEEESSTTTTTTCC----SC--BCCEECCSSCCHHHHHHHHHHHHTS
T ss_pred CE--EEEEcCCHHHHHhhc----CC--ceEEEecCCCCHHHHHHHHHHhhCC
Confidence 43 444776543321111 11 14577775 9999999999988753
No 157
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.12 E-value=2.3e-05 Score=81.06 Aligned_cols=138 Identities=15% Similarity=0.103 Sum_probs=83.1
Q ss_pred HHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhC
Q 003175 470 EDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSG 549 (842)
Q Consensus 470 ~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g 549 (842)
..+..++...+.+..+..++++|+||||||||+++.++++.+.- +..+|...-.
T Consensus 87 ~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l-----------~G~vn~~~~~--------------- 140 (267)
T 1u0j_A 87 QYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF-----------YGCVNWTNEN--------------- 140 (267)
T ss_dssp HHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC-----------EEECCTTCSS---------------
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc-----------cceeeccccc---------------
Confidence 35556677777765223578999999999999999999987531 2222321100
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCC----CCC------CcEEEEEEeCC
Q 003175 550 HRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPT----KPN------SKLIVIGIANT 619 (842)
Q Consensus 550 ~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~----~~~------~~vivI~~tn~ 619 (842)
+ .|... ....|++.||.... ...+..|.++++... ... .+.-||.+||.
T Consensus 141 ----f---------~l~~~-------~~k~i~l~Ee~~~~-~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~ 199 (267)
T 1u0j_A 141 ----F---------PFNDC-------VDKMVIWWEEGKMT-AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNT 199 (267)
T ss_dssp ----C---------TTGGG-------SSCSEEEECSCCEE-TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESS
T ss_pred ----c---------ccccc-------cccEEEEeccccch-hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecC
Confidence 0 01111 12356667776654 455678888887321 010 12234447775
Q ss_pred CCCc--------cccchhhhccCCceeEEec--------CCCHHHHHHHHHHH
Q 003175 620 MDLP--------EKLLPRISSRMGVQRLCFG--------PYNHQQLQEIISSR 656 (842)
Q Consensus 620 ~dl~--------~~l~~~l~sR~~~~~i~f~--------p~~~~e~~~Il~~~ 656 (842)
.-.. +...+.|.||+. .+.|. +++.+++...+...
T Consensus 200 ~i~~~~~g~~~s~~~~~~L~sR~~--~f~F~~~~p~~~~~lt~~~~~~f~~w~ 250 (267)
T 1u0j_A 200 NMCAVIDGNSTTFEHQQPLQDRMF--KFELTRRLDHDFGKVTKQEVKDFFRWA 250 (267)
T ss_dssp CTTCEEETTEEECTTHHHHHTTEE--EEECCSCCCTTSCCCCHHHHHHHHHHH
T ss_pred CcccccccCccchhhhHHHhhhEE--EEECCCcCCcccCCCCHHHHHHHHHHH
Confidence 2111 245578999994 58888 89999999888744
No 158
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=97.96 E-value=5.5e-07 Score=101.35 Aligned_cols=51 Identities=27% Similarity=0.597 Sum_probs=41.0
Q ss_pred cccccccceeeccc--ccccccCccCCCccccccCCCCCCCCCC---CCcccccccccc
Q 003175 185 DPEVEECRICFRAG--RSVMLECDDCLGGFHLKCLKPPLKEVPE---GEWVCEFCEARK 238 (842)
Q Consensus 185 ~~~~~~C~~C~~~~--~~~~l~Cd~C~~~~H~~C~~p~l~~~p~---~~W~C~~C~~~~ 238 (842)
+.+..+| +|+... ++.||+||.|+.|||..|++ +...+. +.|+|+.|....
T Consensus 34 ~~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvg--l~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 34 PPPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVG--VEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHT--CCGGGGGGEEEBCCHHHHHHH
T ss_pred CCCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecC--cCcccccCCCEEECCCCcCCc
Confidence 3455689 999875 37899999999999999999 555543 579999997654
No 159
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.83 E-value=1.6e-06 Score=78.10 Aligned_cols=47 Identities=30% Similarity=0.711 Sum_probs=38.5
Q ss_pred cccceeeccc-------c-cccccCccCCCccccccCCCCCC---CCCCCCccccccc
Q 003175 189 EECRICFRAG-------R-SVMLECDDCLGGFHLKCLKPPLK---EVPEGEWVCEFCE 235 (842)
Q Consensus 189 ~~C~~C~~~~-------~-~~~l~Cd~C~~~~H~~C~~p~l~---~~p~~~W~C~~C~ 235 (842)
.+|.+|..++ + +.||+|+.|++.||..|+++++. .++.+.|+|+.|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 3788897654 2 47999999999999999997632 5788999999994
No 160
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.83 E-value=1.6e-05 Score=79.15 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=39.3
Q ss_pred CcEEEEEecCcccccCC---h--HHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecC
Q 003175 577 RPCILLIDELDLLVTRN---Q--SVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGP 643 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~---~--~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p 643 (842)
+..||||||++.+.... . .-++..|+.. ....+.||.+++. +..++..+++|+. ..++|.+
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~--r~~~~~iil~tq~---~~~l~~~lr~ri~-~~~~l~~ 152 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTH--RHQGIDIFVLTQG---PKLLDQNLRTLVR-KHYHIAS 152 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGT--TTTTCEEEEEESC---GGGBCHHHHTTEE-EEEEEEE
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhc--CcCCeEEEEECCC---HHHHhHHHHHHhh-eEEEEcC
Confidence 56899999999995422 1 1233333322 2334555667776 5788888999987 4666665
No 161
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=97.78 E-value=9.8e-07 Score=97.75 Aligned_cols=48 Identities=29% Similarity=0.614 Sum_probs=38.9
Q ss_pred ccccceeecccc--cccccCccCCCccccccCCCCCCCCC--C-CCcccccccccc
Q 003175 188 VEECRICFRAGR--SVMLECDDCLGGFHLKCLKPPLKEVP--E-GEWVCEFCEARK 238 (842)
Q Consensus 188 ~~~C~~C~~~~~--~~~l~Cd~C~~~~H~~C~~p~l~~~p--~-~~W~C~~C~~~~ 238 (842)
..+| +|+...+ +.||+||.|+.|||..|++ +...+ . +.|+|+.|....
T Consensus 5 ~~yC-iC~~~~d~~~~MIqCD~C~~WfH~~CVg--i~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 5 PVYC-LCRLPYDVTRFMIECDMCQDWFHGSCVG--VEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHT--CCHHHHTTEEECCCHHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEcCCCCcccccccCC--cCcccccCCCEEECCCCcccc
Confidence 4589 9998743 7899999999999999999 55443 2 579999997654
No 162
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.78 E-value=0.00023 Score=86.10 Aligned_cols=164 Identities=14% Similarity=0.222 Sum_probs=97.3
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHH--HHHHhhcCCCCCceEEEEecccCCChHH
Q 003175 461 FLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRS--LRSEVESGSIRPYCFVEVNGLKLASPEN 538 (842)
Q Consensus 461 ~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~--l~~~~~~~~~~~~~~v~in~~~~~s~~~ 538 (842)
..+||+.++++|.+.|... .. .+.+.|+|+.|+|||+||+.+++. +..... ...+.++.....+...
T Consensus 129 ~~VGRe~eLeeL~elL~~~---d~--~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd------~gV~WVsVs~~~d~~~ 197 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL---RP--AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD------FKIFWLNLKNCNSPET 197 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC---CS--SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHS------SCEEEEECCCSSSHHH
T ss_pred CCCCcHHHHHHHHHHHhcc---CC--CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCC------CcEEEEEeCCCCCHHH
Confidence 3589999999999998742 11 478899999999999999999864 333211 1255666655556666
Q ss_pred HHHHHHHHHhCC------C----CCH----HHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCC
Q 003175 539 IYRVIYEALSGH------R----VSW----KKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWP 604 (842)
Q Consensus 539 ~~~~i~~~l~g~------~----~~~----~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~ 604 (842)
+...|...+... . ... ......|...+... .++.++||||+++. ...+..+ .
T Consensus 198 IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l------~~KRvLLVLDDVwd-----~eqLe~f-~-- 263 (1221)
T 1vt4_I 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK------PYENCLLVLLNVQN-----AKAWNAF-N-- 263 (1221)
T ss_dssp HHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHS------TTSSCEEEEESCCC-----HHHHHHH-H--
T ss_pred HHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhh------cCCCEEEEEeCcCh-----HHHHHhh-C--
Confidence 666666543210 0 011 12233444444211 13669999999987 2333332 2
Q ss_pred CCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEec----CCCHHHHHHHHHHHhc
Q 003175 605 TKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFG----PYNHQQLQEIISSRLK 658 (842)
Q Consensus 605 ~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~----p~~~~e~~~Il~~~l~ 658 (842)
++++|+| ||... .....+... ....+.++ +++.++-.+++..++.
T Consensus 264 --pGSRILV--TTRd~----~Va~~l~g~-~vy~LeL~d~dL~LS~eEA~eLF~~~~g 312 (1221)
T 1vt4_I 264 --LSCKILL--TTRFK----QVTDFLSAA-TTTHISLDHHSMTLTPDEVKSLLLKYLD 312 (1221)
T ss_dssp --SSCCEEE--ECSCS----HHHHHHHHH-SSCEEEECSSSSCCCHHHHHHHHHHHHC
T ss_pred --CCeEEEE--eccCh----HHHHhcCCC-eEEEecCccccCCcCHHHHHHHHHHHcC
Confidence 3555554 66542 111111111 01235555 7999999999998864
No 163
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=97.74 E-value=3.8e-06 Score=81.60 Aligned_cols=48 Identities=29% Similarity=0.688 Sum_probs=37.7
Q ss_pred cccceeecccc--c---ccccCccCCCccccccCCCCCCC--------CCC-CCcccccccccc
Q 003175 189 EECRICFRAGR--S---VMLECDDCLGGFHLKCLKPPLKE--------VPE-GEWVCEFCEARK 238 (842)
Q Consensus 189 ~~C~~C~~~~~--~---~~l~Cd~C~~~~H~~C~~p~l~~--------~p~-~~W~C~~C~~~~ 238 (842)
.+|.+|+..-+ + .||+||.|+.|||..|++ +.. +|+ ..|+||.|....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvg--i~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCEN--LSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSS--CCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccc--cCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 37999998643 2 499999999999999999 442 233 379999998764
No 164
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.68 E-value=6.7e-06 Score=66.66 Aligned_cols=52 Identities=25% Similarity=0.595 Sum_probs=42.3
Q ss_pred cccccceeecccccccccCccCCCccccccCCCC------------CCCCCCCCcccccccccc
Q 003175 187 EVEECRICFRAGRSVMLECDDCLGGFHLKCLKPP------------LKEVPEGEWVCEFCEARK 238 (842)
Q Consensus 187 ~~~~C~~C~~~~~~~~l~Cd~C~~~~H~~C~~p~------------l~~~p~~~W~C~~C~~~~ 238 (842)
++..|.+|..-..+.++.|..|.+.||..||.++ +...+..-|.|+.|..-+
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~ 77 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNIN 77 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCC
T ss_pred CCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhh
Confidence 5568999996655669999999999999999875 455567789999996544
No 165
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=97.67 E-value=7.3e-06 Score=91.09 Aligned_cols=37 Identities=22% Similarity=0.574 Sum_probs=30.5
Q ss_pred cccccCccCCCccccccCCCCCCCCC---CCCcccccccccc
Q 003175 200 SVMLECDDCLGGFHLKCLKPPLKEVP---EGEWVCEFCEARK 238 (842)
Q Consensus 200 ~~~l~Cd~C~~~~H~~C~~p~l~~~p---~~~W~C~~C~~~~ 238 (842)
..||+||.|+.|||..|++ +..-+ .+.|+||.|....
T Consensus 56 ~~mI~CD~C~~WfH~~CVg--i~~~~a~~~~~y~Cp~C~~~~ 95 (528)
T 3pur_A 56 FQWIGCDSCQTWYHFLCSG--LEQFEYYLYEKFFCPKCVPHT 95 (528)
T ss_dssp TSEEECTTTCCEEEGGGTT--CCGGGTTTEEECCCTTTHHHH
T ss_pred CCEEECCCCCcCCCCcCCC--CChhHhcCCCeEECcCCcCCC
Confidence 5799999999999999999 54432 2589999998754
No 166
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.66 E-value=0.00019 Score=81.27 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=37.4
Q ss_pred cccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 454 LLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 454 ~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
.+.|.|..+-....+.+++...+...+..+. +.++|.|+||||||+++..++..+...
T Consensus 15 ~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 15 VPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp ------CCSSCCCHHHHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ccccCCCccccCCHHHHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 3445555555555455555555545555443 489999999999999999999998754
No 167
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.63 E-value=5.4e-06 Score=74.41 Aligned_cols=52 Identities=27% Similarity=0.637 Sum_probs=39.5
Q ss_pred ccccceeecc------cc-cccccCccCCCccccccCCCC--C-CCCCCCCccccccc-cccc
Q 003175 188 VEECRICFRA------GR-SVMLECDDCLGGFHLKCLKPP--L-KEVPEGEWVCEFCE-ARKL 239 (842)
Q Consensus 188 ~~~C~~C~~~------~~-~~~l~Cd~C~~~~H~~C~~p~--l-~~~p~~~W~C~~C~-~~~~ 239 (842)
..+|.+|... +. +.||.|+.|++.||.+|++.. + ..++.+.|+|+.|. +...
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC 67 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSC 67 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccccc
Confidence 3478899764 22 579999999999999999832 2 35678999999994 4433
No 168
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.62 E-value=6.2e-05 Score=79.78 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHH
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~ 510 (842)
.++.++|+||||+|||+|+..++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4677899999999999999999887
No 169
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.56 E-value=0.0023 Score=86.18 Aligned_cols=143 Identities=13% Similarity=0.029 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHh
Q 003175 469 MEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALS 548 (842)
Q Consensus 469 ~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~ 548 (842)
.++.+..|..++... .+..+.||+|||||.+++.+++.++ ..++.+||....+.. .+...+.
T Consensus 590 Tdrcy~tl~~Al~~~----~gg~~~GPaGtGKTet~k~La~~lg----------r~~~vfnC~~~~d~~----~~g~i~~ 651 (3245)
T 3vkg_A 590 TDRCYLTLTQALESR----MGGNPFGPAGTGKTETVKALGSQLG----------RFVLVFCCDEGFDLQ----AMSRIFV 651 (3245)
T ss_dssp HHHHHHHHHHHHHTT----CEEEEECSTTSSHHHHHHHHHHHTT----------CCEEEEECSSCCCHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHhc----CCCCCCCCCCCCHHHHHHHHHHHhC----------CeEEEEeCCCCCCHH----HHHHHHh
Confidence 445555555555543 3456899999999999999999998 347888999877742 2222221
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCChHHHHHhhc--------C---CCCC-------CCc
Q 003175 549 GHRVSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILD--------W---PTKP-------NSK 610 (842)
Q Consensus 549 g~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~--------~---~~~~-------~~~ 610 (842)
| ... .....++|||+.+......++...+. . .... +..
T Consensus 652 G--------------~~~----------~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~ 707 (3245)
T 3vkg_A 652 G--------------LCQ----------CGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQD 707 (3245)
T ss_dssp H--------------HHH----------HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTT
T ss_pred h--------------Hhh----------cCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCC
Confidence 1 111 23688999999987654443333221 0 0111 224
Q ss_pred EEEEEEeCCCCC--ccccchhhhccCCceeEEecCCCHHHHHHHHHHH
Q 003175 611 LIVIGIANTMDL--PEKLLPRISSRMGVQRLCFGPYNHQQLQEIISSR 656 (842)
Q Consensus 611 vivI~~tn~~dl--~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~~~ 656 (842)
+.|+.|.|. ++ ...|...+++||. .|.+..++.+.+.+|+..-
T Consensus 708 ~~vfiTmNp-gY~gr~eLP~nLk~lFr--~v~m~~Pd~~~i~ei~L~s 752 (3245)
T 3vkg_A 708 MGIFVTMNP-GYAGRSNLPDNLKKLFR--SMAMIKPDREMIAQVMLYS 752 (3245)
T ss_dssp CEEEECBCC-CGGGCCCSCHHHHTTEE--EEECCSCCHHHHHHHHHHT
T ss_pred eEEEEEeCC-CccCcccChHHHHhhcE--EEEEeCCCHHHHHHHHHHH
Confidence 556667663 22 2356678899994 5999999999999997654
No 170
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.55 E-value=0.00045 Score=67.44 Aligned_cols=74 Identities=20% Similarity=0.226 Sum_probs=44.9
Q ss_pred CcEEEEEecCccccc---CChHHHHHhhcCCCCCCCcEEEEEEeC-CCCCccccchhhhccCCceeEEecCCCHHHHHHH
Q 003175 577 RPCILLIDELDLLVT---RNQSVLYNILDWPTKPNSKLIVIGIAN-TMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEI 652 (842)
Q Consensus 577 ~~~IlilDEid~L~~---~~~~~L~~ll~~~~~~~~~vivI~~tn-~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~I 652 (842)
.|.||+|||++-+.. ..+..|..+++. . ...+|.++. +.+ ..+...+.+|-..+.+.|.+.+.+++..-
T Consensus 99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~----~-~~~~i~~~H~~h~--~~~~~~i~~r~~~~i~~~~~~~r~~~~~~ 171 (178)
T 1ye8_A 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHD----P-NVNVVATIPIRDV--HPLVKEIRRLPGAVLIELTPENRDVILED 171 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTC----T-TSEEEEECCSSCC--SHHHHHHHTCTTCEEEECCTTTTTTHHHH
T ss_pred CCCEEEEeCCCCcccCCHHHHHHHHHHHhc----C-CCeEEEEEccCCC--chHHHHHHhcCCcEEEEecCcCHHHHHHH
Confidence 568999999654433 235667777763 2 233334553 221 34556777886556788888887777665
Q ss_pred HHHHh
Q 003175 653 ISSRL 657 (842)
Q Consensus 653 l~~~l 657 (842)
+..++
T Consensus 172 l~~~~ 176 (178)
T 1ye8_A 172 ILSLL 176 (178)
T ss_dssp HHHHS
T ss_pred HHHHH
Confidence 55544
No 171
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=97.44 E-value=4.5e-05 Score=75.66 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=59.4
Q ss_pred EEEEEeecCCccccc-------CCC--------CC--------cccccccccCCccccccchhccceeeeCccccccc--
Q 003175 284 WCRVFWYMIPEETAA-------GRQ--------PH--------NLRRELYRTNDFANIEMESIIRHCSVMSPKDFVKA-- 338 (842)
Q Consensus 284 ~~~~~w~~~peEt~~-------~~~--------~~--------~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~~-- 338 (842)
-+.|.||+|..|... .+. .+ ...||||+|+..+.+-+.+|+++|.|++.++|...
T Consensus 87 ei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~ 166 (232)
T 2fl7_A 87 EIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFYKDKFFNEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSI 166 (232)
T ss_dssp EEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHHHHHHHHHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC-----
T ss_pred EEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhhhcccccceEEEeccHHHHHHHhhhhheEeccHHHHHHhcc
Confidence 356789999988643 111 22 46899999999999999999999999999999965
Q ss_pred ccCCCCEEEEeeEEecCcccee
Q 003175 339 NDQGDDIFLCEYEYDIHWHSFK 360 (842)
Q Consensus 339 ~~~~~~~~~C~~~y~~~~~~fk 360 (842)
.-.++.+|+|+|.++..-..|.
T Consensus 167 d~~~~~tFf~R~~cd~~~~~f~ 188 (232)
T 2fl7_A 167 DKIEDRDFLVRYACEPTAEKFV 188 (232)
T ss_dssp --CTTTEEEEEEECCTTSCSCE
T ss_pred cccCCceEEEEEEEcCCcCccc
Confidence 3345789999999988777776
No 172
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=97.44 E-value=3.9e-05 Score=76.43 Aligned_cols=77 Identities=19% Similarity=0.197 Sum_probs=62.6
Q ss_pred EEEEEeecCCccccc-------CCC--------CC--------cccccccccCCccccccchhccceeeeCccccccc--
Q 003175 284 WCRVFWYMIPEETAA-------GRQ--------PH--------NLRRELYRTNDFANIEMESIIRHCSVMSPKDFVKA-- 338 (842)
Q Consensus 284 ~~~~~w~~~peEt~~-------~~~--------~~--------~~~~Evf~s~~~d~~~~~~I~~kc~V~~~~~y~~~-- 338 (842)
-+.|.||+|..|... .+. .+ ...||||+|+..+.+-+.+|+++|.|++..+|...
T Consensus 87 ei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~ 166 (238)
T 1m4z_A 87 ELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYYNKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKG 166 (238)
T ss_dssp EEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHHHHHHHHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGG
T ss_pred EEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhhhcccccceEEEeccHHHHhHHhhhhheEeccHHHHhhhcc
Confidence 356799999998643 121 22 46899999999999999999999999999999966
Q ss_pred ccCCCCEEEEeeEEecCcccee
Q 003175 339 NDQGDDIFLCEYEYDIHWHSFK 360 (842)
Q Consensus 339 ~~~~~~~~~C~~~y~~~~~~fk 360 (842)
...++.+|+|+|.++..-..|.
T Consensus 167 d~~~~~tFf~R~~cd~~~~~f~ 188 (238)
T 1m4z_A 167 NVDPERDFTVRYICEPTGEKFV 188 (238)
T ss_dssp GCCTTTEEEEEEECCTTSCCCE
T ss_pred ccccCceEEEEEEEcCCcCccc
Confidence 3356899999999988767676
No 173
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.37 E-value=0.00076 Score=68.29 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=32.2
Q ss_pred hcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 480 TCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 480 i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
+.++-..|..++|+|++|+|||+|++.++..+.... -.+++++..
T Consensus 16 ~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~-------~~v~~~~~~ 60 (235)
T 2w0m_A 16 IQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDG-------DPCIYVTTE 60 (235)
T ss_dssp GTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHT-------CCEEEEESS
T ss_pred hcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCC-------CeEEEEEcc
Confidence 333333478899999999999999999997775431 236666654
No 174
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.35 E-value=0.00046 Score=80.18 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=61.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFL 566 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~ 566 (842)
++.++|+|+||||||+++..++..+.... ..++.+. .. . .....+.+.+.....+....+......|.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g-------~~Vl~~A-pT---~-~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~ 271 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLG-------LEVGLCA-PT---G-KAARRLGEVTGRTASTVHRLLGYGPQGFR 271 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTT-------CCEEEEE-SS---H-HHHHHHHHHHTSCEEEHHHHTTEETTEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcC-------CeEEEec-Cc---H-HHHHHhHhhhcccHHHHHHHHcCCcchhh
Confidence 46789999999999999999998887531 2344332 21 1 12233333321111111111000000011
Q ss_pred cccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 567 DGKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 567 ~~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
.. ........+|||||+..+. ...+..|+.... ...+++++|=.+.
T Consensus 272 ~~---~~~~~~~dvlIIDEasml~---~~~~~~Ll~~~~-~~~~lilvGD~~Q 317 (574)
T 3e1s_A 272 HN---HLEPAPYDLLIVDEVSMMG---DALMLSLLAAVP-PGARVLLVGDTDQ 317 (574)
T ss_dssp CS---SSSCCSCSEEEECCGGGCC---HHHHHHHHTTSC-TTCEEEEEECTTS
T ss_pred hh---hcccccCCEEEEcCccCCC---HHHHHHHHHhCc-CCCEEEEEecccc
Confidence 00 0112245799999999885 356666666543 4667888874443
No 175
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.31 E-value=0.00035 Score=68.68 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+..++|+|++|+|||+++..++..+..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567889999999999999777776653
No 176
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.23 E-value=0.001 Score=66.74 Aligned_cols=53 Identities=19% Similarity=0.025 Sum_probs=36.8
Q ss_pred hhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHH
Q 003175 479 ATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYR 541 (842)
Q Consensus 479 ~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~ 541 (842)
.+.++-..+..++|+|++|+|||++++.++. . . ...+++++.....+...+..
T Consensus 12 ~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~-------~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 12 LLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-S-------GKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-H-------CSEEEEEESSCCCCHHHHHH
T ss_pred hhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-c-------CCcEEEEECCCCCCHHHHHH
Confidence 3444444578899999999999999999988 1 1 14588888765445444443
No 177
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.17 E-value=0.00068 Score=73.66 Aligned_cols=89 Identities=22% Similarity=0.226 Sum_probs=56.8
Q ss_pred CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCC---------C
Q 003175 482 DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHR---------V 552 (842)
Q Consensus 482 ~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~---------~ 552 (842)
++-..+..++|+|+||+|||+|+..++..+.... ..++|++.....+.. + ...+ |.. .
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g-------~~vlyi~~E~~~~~~--~---a~~l-G~~~~~l~i~~~~ 122 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG-------GIAAFIDAEHALDPE--Y---AKKL-GVDTDSLLVSQPD 122 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSCCCCHH--H---HHHT-TCCGGGCEEECCS
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC-------CeEEEEECCCCcCHH--H---HHHc-CCCHHHeEEecCC
Confidence 4444578899999999999999999998776431 347888876544331 1 2222 321 1
Q ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 553 SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 553 ~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
+..+....+..... ...+.+||||++..+..
T Consensus 123 ~~e~~l~~~~~l~~--------~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 123 TGEQALEIADMLVR--------SGALDIIVIDSVAALVP 153 (349)
T ss_dssp SHHHHHHHHHHHHT--------TTCCSEEEEECGGGCCC
T ss_pred CHHHHHHHHHHHHh--------cCCCCEEEEcChHhhcc
Confidence 33444444443332 12578999999999873
No 178
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.16 E-value=0.00034 Score=58.22 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=60.2
Q ss_pred cCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHH
Q 003175 642 GPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMA 720 (842)
Q Consensus 642 ~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~ 720 (842)
|+|+.+++.+||+.++.....-++..++.+++.+.+++| |+. .+|+.|+..|..+ +...|+.+
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~---~l~~eA~~~a~~~-------------~~~~i~~~ 64 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK---GVCTEAGMYALRE-------------RRVHVTQE 64 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHH---HHHHHHHHHHHHT-------------TCSEECHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHh-------------CCCCCCHH
Confidence 578999999999999987764455567888888888888 554 5899999998866 35689999
Q ss_pred HHHHHHHHHhh
Q 003175 721 DVEAAIQEMFQ 731 (842)
Q Consensus 721 dv~~A~~~~~~ 731 (842)
||..|+.++..
T Consensus 65 d~~~Al~~v~~ 75 (78)
T 3kw6_A 65 DFEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 179
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.15 E-value=0.001 Score=67.86 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=57.5
Q ss_pred hhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCC--------
Q 003175 479 ATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGH-------- 550 (842)
Q Consensus 479 ~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~-------- 550 (842)
.+.++-..+..+.|+||+|+|||++++.++.........+. .....+++++........+...+ ..+ |.
T Consensus 16 ~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~-~~~~~~~i~~~~~~~~~~~~~~~-~~~-g~~~~~~~~~ 92 (243)
T 1n0w_A 16 LLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGG-GEGKAMYIDTEGTFRPERLLAVA-ERY-GLSGSDVLDN 92 (243)
T ss_dssp HTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTC-CSSEEEEEESSSCCCHHHHHHHH-HHT-TCCHHHHHHT
T ss_pred hhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCC-CCCeEEEEECCCCcCHHHHHHHH-HHc-CCCHHHHhhC
Confidence 34344445788999999999999999999885321100000 01458899887644444333222 222 11
Q ss_pred -----CCCHHHHHH---HHHHHhhcccCCCCCCCCcEEEEEecCcccccC
Q 003175 551 -----RVSWKKALH---SLNERFLDGKKIGKEDDRPCILLIDELDLLVTR 592 (842)
Q Consensus 551 -----~~~~~~~~~---~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~ 592 (842)
..+..+... .+.+.+.. ..+.+|||||+..+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 93 VAYARAFNTDHQTQLLYQASAMMVE--------SRYALLIVDSATALYRT 134 (243)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHH--------SCEEEEEEETSSGGGC-
T ss_pred eEEEecCCHHHHHHHHHHHHHHHhc--------CCceEEEEeCchHHHHH
Confidence 112222222 23333321 26789999999987643
No 180
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.14 E-value=0.00076 Score=68.18 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+..++++|++|+|||+++..++..+...
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~ 39 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA 39 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 6788899999999999999888887643
No 181
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.14 E-value=0.00086 Score=86.74 Aligned_cols=88 Identities=19% Similarity=0.196 Sum_probs=57.4
Q ss_pred CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCC---------CC
Q 003175 483 DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHR---------VS 553 (842)
Q Consensus 483 ~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~---------~~ 553 (842)
+-..+.+++|+||||||||+|+.+++.+..... ..+++++.....++.. ...+ |.. ..
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G-------~~v~Fi~~e~~~~~l~-----a~~~-G~dl~~l~v~~~~~ 1489 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG-------KTCAFIDAEHALDPIY-----ARKL-GVDIDNLLCSQPDT 1489 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTT-------CCEEEECTTSCCCHHH-----HHHT-TCCTTTCEEECCSS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-------CcEEEEEcccccCHHH-----HHHc-CCCchhceeecCCh
Confidence 333578999999999999999999998876431 3578888777665422 2222 311 12
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 554 WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 554 ~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
..+....+...... ..+.+|||||++.+..
T Consensus 1490 ~E~~l~~~~~lvr~--------~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1490 GEQALEICDALARS--------GAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHHHHHHHHHHH--------TCCSEEEESCGGGCCC
T ss_pred HHHHHHHHHHHHhc--------CCCCEEEEcChhHhcc
Confidence 23344444433222 2678999999987765
No 182
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.09 E-value=0.0038 Score=68.07 Aligned_cols=89 Identities=21% Similarity=0.242 Sum_probs=57.6
Q ss_pred CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCC---------C
Q 003175 482 DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHR---------V 552 (842)
Q Consensus 482 ~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~---------~ 552 (842)
++-..+..++|+|+||+|||+++..++..+... + ..+++|+.....+. ++ ...+ |.. .
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~---g----~~vlyi~~E~s~~~--~~---a~~~-g~d~~~l~i~~~~ 135 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKA---G----GTCAFIDAEHALDP--VY---ARAL-GVNTDELLVSQPD 135 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---T----CCEEEEESSCCCCH--HH---HHHT-TCCGGGCEEECCS
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC---C----CeEEEEECCCChhH--HH---HHHc-CCCHHHceeecCC
Confidence 444457889999999999999999998887642 1 35888887754433 21 2222 221 2
Q ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 553 SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 553 ~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
+..+....+...... ..+.+||||.+..+..
T Consensus 136 ~~e~~l~~l~~l~~~--------~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 136 NGEQALEIMELLVRS--------GAIDVVVVDSVAALTP 166 (366)
T ss_dssp SHHHHHHHHHHHHTT--------TCCSEEEEECTTTCCC
T ss_pred cHHHHHHHHHHHHhc--------CCCCEEEEeChHHhcc
Confidence 344444555444321 2467999999999974
No 183
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.07 E-value=0.0033 Score=64.22 Aligned_cols=46 Identities=17% Similarity=-0.000 Sum_probs=33.4
Q ss_pred hcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 480 TCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 480 i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
+.++-..+..++|+|+||+|||+++..++..+.... -.+++++...
T Consensus 16 l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~-------~~v~~~~~e~ 61 (247)
T 2dr3_A 16 LHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMG-------EPGIYVALEE 61 (247)
T ss_dssp TTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSS
T ss_pred cCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEEccC
Confidence 344444578899999999999999988877765321 3477877654
No 184
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.05 E-value=0.0015 Score=70.82 Aligned_cols=89 Identities=19% Similarity=0.177 Sum_probs=58.9
Q ss_pred CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCC---------CC
Q 003175 482 DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGH---------RV 552 (842)
Q Consensus 482 ~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~---------~~ 552 (842)
++-..+..++|+||||+|||+|+..++..+.... -.++||++....+.. .++.+ |. ..
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~g-------g~VlyId~E~s~~~~-----ra~rl-gv~~~~l~i~~~~ 122 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG-------GVAAFIDAEHALDPV-----YAKNL-GVDLKSLLISQPD 122 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSCCCCHH-----HHHHH-TCCGGGCEEECCS
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEecccccchH-----HHHHc-CCchhhhhhhhcc
Confidence 4544578899999999999999999998876431 347889887655542 22222 21 12
Q ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 553 SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 553 ~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
+..+....+...+.. ..+.+||||.+..+..
T Consensus 123 ~~e~~l~~~~~l~~~--------~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 123 HGEQALEIVDELVRS--------GVVDLIVVDSVAALVP 153 (356)
T ss_dssp SHHHHHHHHHHHHHT--------SCCSEEEEECTTTCCC
T ss_pred CHHHHHHHHHHHhhh--------cCCCeEEehHhhhhcC
Confidence 344555555444332 2457999999988875
No 185
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.97 E-value=0.00085 Score=67.92 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=36.0
Q ss_pred CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCCh
Q 003175 482 DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASP 536 (842)
Q Consensus 482 ~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~ 536 (842)
++-..+..+.|.||+|+|||+|++.++..+......+.. .-..+++++......
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~-~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGL-NGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCC-SCEEEEEESSSCCCH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCC-CCEEEEEECCCCCCH
Confidence 343457789999999999999999998865422111111 134788887764443
No 186
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=96.96 E-value=0.00043 Score=58.72 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=60.8
Q ss_pred EecCCCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCccc
Q 003175 640 CFGPYNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVG 718 (842)
Q Consensus 640 ~f~p~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It 718 (842)
.-.||+.+++.+||+.+++....-++..++.+++.+.+++| |+. .+|+.|+..|.++. ...|+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~---~l~~eAa~~alr~~-------------~~~I~ 70 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK---GVCTEAGMYALRER-------------RVHVT 70 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHH---HHHHHHHHHHHHTT-------------CSEEC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHc-------------CCCCC
Confidence 45799999999999999987654344557788888888888 554 48999999988662 46799
Q ss_pred HHHHHHHHHHHhh
Q 003175 719 MADVEAAIQEMFQ 731 (842)
Q Consensus 719 ~~dv~~A~~~~~~ 731 (842)
.+||..|+..+..
T Consensus 71 ~~df~~Al~~v~p 83 (86)
T 2krk_A 71 QEDFEMAVAKVMQ 83 (86)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcc
Confidence 9999999987754
No 187
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.94 E-value=0.0095 Score=68.05 Aligned_cols=74 Identities=11% Similarity=0.190 Sum_probs=52.3
Q ss_pred CcEEEEEecCcccccCC----hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHH
Q 003175 577 RPCILLIDELDLLVTRN----QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEI 652 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~----~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~I 652 (842)
.+++|||||++.|.... ...|..+.... ....|.||.+|.++.. +.+...+++-|. .+|.|..-+..+...|
T Consensus 343 P~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~G--Ra~GIhLIlaTQRPs~-d~I~~~Iran~~-~RI~lrv~s~~Dsr~I 418 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVGKKVEELIARIAQKA--RAAGIHLILATQRPSV-DVITGLIKANIP-TRIAFQVSSKIDSRTI 418 (574)
T ss_dssp CEEEEEESCCTTHHHHTCHHHHHHHHHHHHHC--TTTTEEEEEEESCCCT-TTSCHHHHHTCC-EEEEECCSCHHHHHHH
T ss_pred CcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHH--hhCCeEEEEEecCccc-ccccHHHHhhhc-cEEEEEcCCHHHHHHh
Confidence 35899999999886422 24455555533 2456778888888642 356677888888 6889999999988888
Q ss_pred HH
Q 003175 653 IS 654 (842)
Q Consensus 653 l~ 654 (842)
|-
T Consensus 419 Ld 420 (574)
T 2iut_A 419 LD 420 (574)
T ss_dssp HS
T ss_pred cC
Confidence 74
No 188
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.94 E-value=0.0047 Score=65.16 Aligned_cols=92 Identities=16% Similarity=0.133 Sum_probs=57.5
Q ss_pred CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCC---------C
Q 003175 482 DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHR---------V 552 (842)
Q Consensus 482 ~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~---------~ 552 (842)
+|-..+ .++|+||||+|||+|+..++..+.... +.-.++||++..-..+. .++.+ |.. .
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g-----~g~~vlyId~E~s~~~~-----ra~~l-Gvd~d~llv~~~~ 91 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQY-----PDAVCLFYDSEFGITPA-----YLRSM-GVDPERVIHTPVQ 91 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHC-----TTCEEEEEESSCCCCHH-----HHHHT-TCCGGGEEEEECS
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcC-----CCceEEEEeccchhhHH-----HHHHh-CCCHHHeEEEcCC
Confidence 555445 789999999999999988888776431 01358999987755542 13333 322 1
Q ss_pred CHHHH-HHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 553 SWKKA-LHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 553 ~~~~~-~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
+..+. +..+... ... ....+.+||||-+..|..
T Consensus 92 ~~E~~~l~i~~~l-~~i-----~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 92 SLEQLRIDMVNQL-DAI-----ERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp BHHHHHHHHHHHH-HTC-----CTTCCEEEEEECSTTCBC
T ss_pred CHHHHHHHHHHHH-HHh-----hccCceEEEEeccccccc
Confidence 33443 3333222 111 124689999999999974
No 189
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.86 E-value=0.0027 Score=81.27 Aligned_cols=93 Identities=19% Similarity=0.254 Sum_probs=58.1
Q ss_pred CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCC----H--H
Q 003175 482 DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVS----W--K 555 (842)
Q Consensus 482 ~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~----~--~ 555 (842)
++.+.|+.++||||||||||+++++++.+.... + -+.++|+.....++ ++. .-.|.... . .
T Consensus 1077 GG~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~---g----~~~~fi~~~~~~~~--~~~----~~~G~d~~~~~~~~~~ 1143 (1706)
T 3cmw_A 1077 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---G----KTCAFIDAEHALDP--IYA----RKLGVDIDNLLCSQPD 1143 (1706)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT---T----CCEEEECTTSCCCH--HHH----HHTTCCGGGCEEECCS
T ss_pred CCCCCCCEEEEEcCCCCChHHHHHHHHHHhhhc---C----CceeEEEcccchHH--HHH----HHhCCCHHHHhhcccc
Confidence 444457789999999999999999999887643 1 24778887665432 232 22232211 0 0
Q ss_pred HHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC
Q 003175 556 KALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR 592 (842)
Q Consensus 556 ~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~ 592 (842)
...+.|+..|..++. ..+++|++||+|.|...
T Consensus 1144 ~~e~~l~~~~~~ar~-----~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1144 TGEQALEICDALARS-----GAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp SHHHHHHHHHHHHHH-----TCCSEEEESCGGGCCCH
T ss_pred chHHHHHHHHHHHHh-----cCCeEEEeCchHhcCcc
Confidence 123334434432221 36899999999988775
No 190
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.79 E-value=0.0066 Score=71.04 Aligned_cols=27 Identities=41% Similarity=0.557 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
++.++|+|+||||||+++..++..+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999988874
No 191
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.77 E-value=0.0081 Score=61.35 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=28.6
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHH
Q 003175 463 PCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 463 ~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l 511 (842)
.-|..|.+.+..++. +..++|+||+|+|||.++..++..+
T Consensus 93 ~l~~~Q~~ai~~~~~---------~~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 93 SLRDYQEKALERWLV---------DKRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCHHHHHHHHHHTT---------TSEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHh---------CCCEEEEeCCCCCHHHHHHHHHHHc
Confidence 345666665554432 2348999999999999998887765
No 192
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.72 E-value=0.0032 Score=67.66 Aligned_cols=63 Identities=16% Similarity=0.004 Sum_probs=41.2
Q ss_pred hhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHH
Q 003175 479 ATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRV 542 (842)
Q Consensus 479 ~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~ 542 (842)
.+.++-..+..++|+|+||+|||+++..++..+......+. ....++||+.....++..+...
T Consensus 99 ~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg-~~~~vlyi~~e~~~~~~~l~~~ 161 (324)
T 2z43_A 99 LLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG-LSGKAVYIDTEGTFRWERIENM 161 (324)
T ss_dssp HTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC-CSCEEEEEESSSCCCHHHHHHH
T ss_pred hcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC-CCCeEEEEECCCCCCHHHHHHH
Confidence 34445455788999999999999999999877532110111 1246899988775455554443
No 193
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.71 E-value=0.0086 Score=67.50 Aligned_cols=53 Identities=11% Similarity=0.100 Sum_probs=35.9
Q ss_pred CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHH
Q 003175 483 DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVI 543 (842)
Q Consensus 483 ~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i 543 (842)
+-..|..++|.|+||+|||+++..++..+.... + ..+++++.. .+...+...+
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g----~~Vl~~s~E--~s~~~l~~r~ 251 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--N----ENVAIFSLE--MSAQQLVMRM 251 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--S----CCEEEEESS--SCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--C----CcEEEEECC--CCHHHHHHHH
Confidence 333578899999999999999999998876431 1 246676644 2344444443
No 194
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.71 E-value=0.0073 Score=60.66 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=23.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
-.+++.|++|+|||+++-.++..+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 468999999999999999999988754
No 195
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.69 E-value=0.0066 Score=65.93 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=56.7
Q ss_pred CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCC---------C
Q 003175 482 DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHR---------V 552 (842)
Q Consensus 482 ~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~---------~ 552 (842)
++-..+..++|+|+||+|||+++..++..+.... ..+++|+.....++. + ...+ |.. .
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g-------~~vlyid~E~s~~~~--~---a~~~-g~~~~~l~i~~~~ 124 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG-------KTCAFIDAEHALDPI--Y---ARKL-GVDIDNLLCSQPD 124 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSCCCCHH--H---HHHT-TCCGGGCEEECCS
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCC-------CeEEEEeCCCCccHH--H---HHHc-CCChhheeeeCCC
Confidence 4444578899999999999999999998876431 348888886544432 1 2222 221 1
Q ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 553 SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 553 ~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
+..+....+...... ..+.+||||.+..+..
T Consensus 125 ~~e~~~~~~~~l~~~--------~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 125 TGEQALEICDALARS--------GAVDVIVVDSVAALTP 155 (356)
T ss_dssp SHHHHHHHHHHHHHH--------TCCSEEEEECGGGCCC
T ss_pred CHHHHHHHHHHHHhc--------cCCCEEEEcCHHHhcc
Confidence 233444444333221 2457999999999874
No 196
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.68 E-value=0.003 Score=69.71 Aligned_cols=61 Identities=11% Similarity=0.033 Sum_probs=39.1
Q ss_pred HHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChH
Q 003175 476 IKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPE 537 (842)
Q Consensus 476 l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~ 537 (842)
|...+.++-..+..+.|+|++|+|||+|++.++-........+. ..-..+|+++.......
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg-~~~~viyid~E~~~~~~ 227 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGG-GEGKCLYIDTEGTFRPV 227 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC-CSSEEEEEESSSCCCHH
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCC-CCCcEEEEeCCCccCHH
Confidence 33444455556889999999999999999977644322111110 12458999987754443
No 197
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.66 E-value=0.0026 Score=65.16 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=23.5
Q ss_pred CcccCCeEEEEcCCCChHHHHHHHHHHH
Q 003175 483 DQCLGRCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 483 ~~~~~~~ili~GppGtGKT~l~~~v~~~ 510 (842)
+-..|..+.|.||+|+|||||++.++..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3334788999999999999999999854
No 198
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.66 E-value=0.0034 Score=68.11 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=38.0
Q ss_pred HhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCCh
Q 003175 478 GATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASP 536 (842)
Q Consensus 478 ~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~ 536 (842)
..+.++-..+..+.|+|++|+|||+|++.++..+......+... -.++||++.....+
T Consensus 122 ~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~-G~vi~i~~e~~~~~ 179 (349)
T 1pzn_A 122 KLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLN-GSVIWIDTENTFRP 179 (349)
T ss_dssp HHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCS-CEEEEEESSSCCCH
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCC-CeEEEEeCCCCCCH
Confidence 33444544578899999999999999999988763211111111 24689988765433
No 199
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.63 E-value=0.013 Score=62.70 Aligned_cols=56 Identities=11% Similarity=0.010 Sum_probs=38.6
Q ss_pred CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHH
Q 003175 482 DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEA 546 (842)
Q Consensus 482 ~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~ 546 (842)
+|-..|..++|.|+||+|||+++..++..+... + ..+++++.. .+..++...+...
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g----~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---D----DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---T----CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---C----CeEEEEECC--CCHHHHHHHHHHH
Confidence 333457889999999999999999998776532 1 357777765 4555555544433
No 200
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.60 E-value=0.0009 Score=65.77 Aligned_cols=122 Identities=14% Similarity=0.084 Sum_probs=62.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc---CCChHHHHHHHHHHH--hCCCCC-----HHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK---LASPENIYRVIYEAL--SGHRVS-----WKK 556 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~---~~s~~~~~~~i~~~l--~g~~~~-----~~~ 556 (842)
.+.++|++.+|.|||+++-.++-...... .++..+.... ...+..++..+.-.+ .|.... ...
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G-------~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG-------KNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT-------CCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC-------CeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHH
Confidence 36789999999999999998887776432 4455553222 222333333331000 011000 011
Q ss_pred HHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC---ChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 557 ALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR---NQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 557 ~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~---~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
........+..+.... .....-+|||||+-....- ..+.++.++.. .....-||.|+|.
T Consensus 101 ~~~~a~~~l~~a~~~l-~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~ 162 (196)
T 1g5t_A 101 DTAACMAVWQHGKRML-ADPLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRG 162 (196)
T ss_dssp HHHHHHHHHHHHHHHT-TCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSS
T ss_pred HHHHHHHHHHHHHHHH-hcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCC
Confidence 1111122222211111 1246789999999765432 34556666652 3445666668775
No 201
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.57 E-value=0.0019 Score=63.31 Aligned_cols=37 Identities=22% Similarity=0.149 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCChHH-HHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 487 GRCLYIHGVPGTGKT-MSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 487 ~~~ili~GppGtGKT-~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
+...+|||+.|+||| .|++++.+..... ..++++...
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~--------~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQ--------YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT--------CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcC--------CeEEEEccc
Confidence 678899999999999 7888777765532 446777644
No 202
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=96.56 E-value=0.0006 Score=61.60 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=30.1
Q ss_pred cccccCccCCCccccccCCCCCCCCCCC----Ccccccccccc
Q 003175 200 SVMLECDDCLGGFHLKCLKPPLKEVPEG----EWVCEFCEARK 238 (842)
Q Consensus 200 ~~~l~Cd~C~~~~H~~C~~p~l~~~p~~----~W~C~~C~~~~ 238 (842)
..|+.|+.|+.|||..|+++....+++. .|.||.|....
T Consensus 73 ~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 73 KKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp GSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred cceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 5689999999999999999876554443 49999998764
No 203
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.55 E-value=0.0071 Score=59.45 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=43.8
Q ss_pred CCcEEEEEecCcccccCC---hHHHHHhhcCCCCCCCcEEEEEE-e--CCCCCccccchhhhccCCceeEEecCCCHHHH
Q 003175 576 DRPCILLIDELDLLVTRN---QSVLYNILDWPTKPNSKLIVIGI-A--NTMDLPEKLLPRISSRMGVQRLCFGPYNHQQL 649 (842)
Q Consensus 576 ~~~~IlilDEid~L~~~~---~~~L~~ll~~~~~~~~~vivI~~-t--n~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~ 649 (842)
..+-||||||++.+.... .+.|..+++. ...+ |||+ + .+. ...+..++..+-+.+.+.+..-+.+.+
T Consensus 104 ~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~----~~~~-ilgti~vsh~~--~~~~vd~i~~~~~~~i~~~~~~nr~~~ 176 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQLFIQAVRQTLST----PGTI-ILGTIPVPKGK--PLALVEEIRNRKDVKVFNVTKENRNHL 176 (189)
T ss_dssp SCCCCEEECCCSTTTTTCSHHHHHHHHHHHC----SSCC-EEEECCCCCSS--CCTTHHHHHTTCCSEEEECCSSSGGGH
T ss_pred cCCCEEEEeCCCccccccHHHHHHHHHHHhC----CCcE-EEEEeecCCCC--chHHHHHHeecCCcEEEEeChHhHHHH
Confidence 467899999987775443 3556666652 2233 3333 2 222 124566776665546777877777666
Q ss_pred HHHHHHHh
Q 003175 650 QEIISSRL 657 (842)
Q Consensus 650 ~~Il~~~l 657 (842)
.+-+...+
T Consensus 177 ~~~i~~~~ 184 (189)
T 2i3b_A 177 LPDIVTCV 184 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554444
No 204
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.55 E-value=0.017 Score=64.08 Aligned_cols=80 Identities=18% Similarity=0.099 Sum_probs=51.3
Q ss_pred HHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCc-------ccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCC
Q 003175 448 RAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQ-------CLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSI 520 (842)
Q Consensus 448 ~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~-------~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~ 520 (842)
..++.+....++..+-.++..++.+.+.|...+.... ..+..++|.|++|+||||++..++..+....
T Consensus 51 ~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G----- 125 (433)
T 3kl4_A 51 KIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRG----- 125 (433)
T ss_dssp HHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHhcccccccCChHHHHHHHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-----
Confidence 3344444444555555566666777777766554321 1256888999999999999999999887531
Q ss_pred CCceEEEEecccCC
Q 003175 521 RPYCFVEVNGLKLA 534 (842)
Q Consensus 521 ~~~~~v~in~~~~~ 534 (842)
..+..+.+..+.
T Consensus 126 --~kVllv~~D~~r 137 (433)
T 3kl4_A 126 --YKVGLVAADVYR 137 (433)
T ss_dssp --CCEEEEEECCSC
T ss_pred --CeEEEEecCccc
Confidence 335555555433
No 205
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.55 E-value=0.012 Score=66.15 Aligned_cols=56 Identities=13% Similarity=-0.015 Sum_probs=38.2
Q ss_pred CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHH
Q 003175 482 DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYE 545 (842)
Q Consensus 482 ~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~ 545 (842)
+|-..|..++|.|+||+|||+++..++..+.... ..++++++.. .+...+...+..
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~------g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE------GVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT------CCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC------CCeEEEEECC--CCHHHHHHHHHH
Confidence 3444578899999999999999999998776421 1347777764 344455544443
No 206
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.45 E-value=0.11 Score=57.71 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=47.2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhcCC------cccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEec
Q 003175 457 TLPKFLPCRNKEMEDITAFIKGATCDD------QCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNG 530 (842)
Q Consensus 457 ~~p~~L~gRe~e~~~l~~~l~~~i~~~------~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~ 530 (842)
.++..+-..+..++.|.+.|...+... ...+..++|+|++|+||||++..++..+.... ..++-+.+
T Consensus 64 ~v~~~~~~~~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G-------~kVllv~~ 136 (443)
T 3dm5_A 64 KPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRG-------YKVGVVCS 136 (443)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTT-------CCEEEEEC
T ss_pred cccccCCcHHHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCC-------CeEEEEeC
Confidence 333444445555666666666654321 01256889999999999999999999887431 34667777
Q ss_pred ccCCC
Q 003175 531 LKLAS 535 (842)
Q Consensus 531 ~~~~s 535 (842)
..+..
T Consensus 137 D~~R~ 141 (443)
T 3dm5_A 137 DTWRP 141 (443)
T ss_dssp CCSST
T ss_pred CCcch
Confidence 66554
No 207
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.44 E-value=0.011 Score=66.90 Aligned_cols=73 Identities=11% Similarity=0.212 Sum_probs=48.7
Q ss_pred EEEEEecCcccccCC----hHHHHHhhcCCCCCCCcEEEEEEeCCCCCccccchhhhccCCceeEEecCCCHHHHHHHHH
Q 003175 579 CILLIDELDLLVTRN----QSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNHQQLQEIIS 654 (842)
Q Consensus 579 ~IlilDEid~L~~~~----~~~L~~ll~~~~~~~~~vivI~~tn~~dl~~~l~~~l~sR~~~~~i~f~p~~~~e~~~Il~ 654 (842)
++|||||+..+.... .+.|..|.... ....+.+|.+|.+++. +.+...+++.+. .+|.|.--+..+...|+.
T Consensus 299 ivlvIDE~~~ll~~~~~~~~~~l~~Lar~g--Ra~GI~LIlaTQrp~~-dvl~~~i~~n~~-~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 299 IVVLVDEFADLMMTVGKKVEELIARLAQKA--RAAGIHLVLATQRPSV-DVITGLIKANIP-TRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHHHHHHC--GGGTEEEEEEESCCCT-TTSCHHHHHHCC-EEEEECCSSHHHHHHHHS
T ss_pred EEEEEeCHHHHHhhhhHHHHHHHHHHHHHh--hhCCcEEEEEecCCcc-ccccHHHHhhcC-CeEEEEcCCHHHHHHhcC
Confidence 699999998776422 23344444322 1235777778887541 345566777777 688999999999888875
Q ss_pred H
Q 003175 655 S 655 (842)
Q Consensus 655 ~ 655 (842)
.
T Consensus 375 ~ 375 (512)
T 2ius_A 375 Q 375 (512)
T ss_dssp S
T ss_pred C
Confidence 3
No 208
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.43 E-value=0.0093 Score=64.54 Aligned_cols=63 Identities=11% Similarity=-0.042 Sum_probs=40.6
Q ss_pred hhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHH
Q 003175 479 ATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRV 542 (842)
Q Consensus 479 ~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~ 542 (842)
.+.++-..+..++|+|+||+|||+++..++.........+. ..-.++||+.....++..+...
T Consensus 114 ~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg-~~~~vlyi~~E~~~~~~~l~~~ 176 (343)
T 1v5w_A 114 LLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY-PGGKIIFIDTENTFRPDRLRDI 176 (343)
T ss_dssp HTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB-CCCEEEEEESSSCCCHHHHHHH
T ss_pred HhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC-CCCeEEEEECCCCCCHHHHHHH
Confidence 34445445778899999999999999998876431100000 1246899998775555554443
No 209
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=96.42 E-value=0.0011 Score=63.14 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=33.0
Q ss_pred ccccceeecccc--cccccCccCCCccccccCCCCCCCCCCC----Cccccccccc
Q 003175 188 VEECRICFRAGR--SVMLECDDCLGGFHLKCLKPPLKEVPEG----EWVCEFCEAR 237 (842)
Q Consensus 188 ~~~C~~C~~~~~--~~~l~Cd~C~~~~H~~C~~p~l~~~p~~----~W~C~~C~~~ 237 (842)
..+| -||+.++ -.||+|+.|..|||..|+..+...+-.+ .+.|..|...
T Consensus 5 ~~yC-YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 5 AGSV-DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp -------CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTT
T ss_pred eeEE-EcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCC
Confidence 4589 7999876 6899999999999999998554333222 4679999653
No 210
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.41 E-value=0.0082 Score=64.32 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=59.9
Q ss_pred HhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHh---------hcCCCCCceEEEEecccCCChHHHHHHHHHHHh
Q 003175 478 GATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEV---------ESGSIRPYCFVEVNGLKLASPENIYRVIYEALS 548 (842)
Q Consensus 478 ~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~---------~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~ 548 (842)
..+.++-..+..++|+|+||+|||+++..++....-.. ..+......++||+.....++..+...+. .+
T Consensus 89 ~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~-~~- 166 (322)
T 2i1q_A 89 SVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAE-HA- 166 (322)
T ss_dssp HHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHH-HH-
T ss_pred HhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHH-Hc-
Confidence 34445545578899999999999999999887632110 00111014689998877545555554432 22
Q ss_pred CCC-------------CCHHH---HHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 549 GHR-------------VSWKK---ALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 549 g~~-------------~~~~~---~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
|.. .+..+ ....+...+.. ...+.+||||.+..+..
T Consensus 167 g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~-------~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 167 GIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQE-------GNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp TCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHT-------TCEEEEEEEECSSHHHH
T ss_pred CCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhh-------ccCccEEEEECcHHHHH
Confidence 211 12222 22223333322 13578999999998853
No 211
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=96.41 E-value=0.0019 Score=54.93 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHH
Q 003175 645 NHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVE 723 (842)
Q Consensus 645 ~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~ 723 (842)
+.+++.+||+.++++.+.-++..++.+++.+.+++| |+. .+|+.|+..|.++. ...|+.+||.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~---~l~~eAa~~a~r~~-------------~~~i~~~df~ 65 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELR---SVCTEAGMFAIRAR-------------RKVATEKDFL 65 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHH---HHHHHHHHHHHHHS-------------CSSBCHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHH---HHHHHHHHHHHHhc-------------cccCCHHHHH
Confidence 567899999999987765455668888888888888 554 59999999998772 4679999999
Q ss_pred HHHHHHhhC
Q 003175 724 AAIQEMFQA 732 (842)
Q Consensus 724 ~A~~~~~~~ 732 (842)
.|+..+...
T Consensus 66 ~Al~~v~~~ 74 (88)
T 3vlf_B 66 KAVDKVISG 74 (88)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHhcC
Confidence 999988654
No 212
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.23 E-value=0.0019 Score=59.97 Aligned_cols=38 Identities=32% Similarity=0.719 Sum_probs=30.0
Q ss_pred cccCccCCCccccccCCCC------CCCCCC-CCccccccccccc
Q 003175 202 MLECDDCLGGFHLKCLKPP------LKEVPE-GEWVCEFCEARKL 239 (842)
Q Consensus 202 ~l~Cd~C~~~~H~~C~~p~------l~~~p~-~~W~C~~C~~~~~ 239 (842)
||+||.|..|||..|.+-. |..+|+ ..|.||.|.....
T Consensus 2 mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHV 46 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSC
T ss_pred ccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccccc
Confidence 9999999999999999832 134564 4799999987653
No 213
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.20 E-value=0.015 Score=59.06 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~ 510 (842)
+..+++.|++|+|||+++..++-.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhc
Confidence 578999999999999877665543
No 214
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.15 E-value=0.018 Score=60.81 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=25.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
.|..++|.|+||+|||+|++.++..+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4778999999999999999999988764
No 215
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.13 E-value=0.0034 Score=60.68 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|+|++|+||||+++.+++.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56799999999999999999999875
No 216
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.06 E-value=0.012 Score=76.36 Aligned_cols=88 Identities=22% Similarity=0.320 Sum_probs=55.6
Q ss_pred CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCC---------C
Q 003175 483 DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRV---------S 553 (842)
Q Consensus 483 ~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~---------~ 553 (842)
+-..+.+++|+|+||||||+++..++.+..... ...+|++.....+. ++ ...+ |... .
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~G-------e~~~Fit~ee~~~~--L~---a~~~-G~dl~~l~~~~pd~ 1143 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG-------KTCAFIDAEHALDP--IY---ARKL-GVDIDNLLCSQPDT 1143 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTT-------CCEEEECTTSCCCH--HH---HHHT-TCCTTTCEEECCSS
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcC-------CeEEEEEccccHHH--HH---HHHc-CCChhHheeecCcc
Confidence 334578999999999999999999998876431 45888888776554 22 1221 2211 1
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 554 WKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 554 ~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
..... .+.+.+... ..+.+||||++..|..
T Consensus 1144 ~e~~~-~i~~~l~~~-------~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1144 GEQAL-EICDALARS-------GAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HHHHH-HHHHHHHHH-------TCCSEEEESCGGGCCC
T ss_pred hHHHH-HHHHHHHHh-------CCCCEEEECCcccccc
Confidence 11222 222222211 2678999999999954
No 217
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.03 E-value=0.011 Score=60.27 Aligned_cols=55 Identities=20% Similarity=0.054 Sum_probs=35.5
Q ss_pred hhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHH
Q 003175 479 ATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYR 541 (842)
Q Consensus 479 ~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~ 541 (842)
.+.+|-..|..++|+|+||+|||+++..++........ ..+++++.. .+...+..
T Consensus 22 ~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~------~~v~~~s~E--~~~~~~~~ 76 (251)
T 2zts_A 22 LIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG------EPGVFVTLE--ERARDLRR 76 (251)
T ss_dssp GTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC------CCEEEEESS--SCHHHHHH
T ss_pred hhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC------CCceeeccc--CCHHHHHH
Confidence 34455556889999999999999999887765432211 236666654 23444443
No 218
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.87 E-value=0.014 Score=58.67 Aligned_cols=26 Identities=19% Similarity=0.565 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
++.|+|.||||+||+|.++.+++.++
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 57889999999999999999998765
No 219
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.87 E-value=0.023 Score=58.14 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|.|+||+||||+++.+++.++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999998775
No 220
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=95.80 E-value=0.0024 Score=53.63 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHH
Q 003175 644 YNHQQLQEIISSRLKGIEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADV 722 (842)
Q Consensus 644 ~~~~e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv 722 (842)
++.+++.+||+.+++..+.-++..++.+++.+.+++| |+. .+|+.|+..|..+ +...|+.+||
T Consensus 1 ~d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~---~l~~eA~~~a~~~-------------~~~~i~~~df 64 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADIN---SICQESGMLAVRE-------------NRYIVLAKDF 64 (83)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHH---HHHHHHHHGGGTS-------------CCSSBCHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHh-------------ccCCcCHHHH
Confidence 4678999999999987664445557788888878887 554 4899999887654 2467999999
Q ss_pred HHHHHHHhhCh
Q 003175 723 EAAIQEMFQAP 733 (842)
Q Consensus 723 ~~A~~~~~~~~ 733 (842)
..|+..+..+.
T Consensus 65 ~~Al~~~~ps~ 75 (83)
T 3aji_B 65 EKAYKTVIKKD 75 (83)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHccCc
Confidence 99999887653
No 221
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.71 E-value=0.016 Score=57.72 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+...+++|+.|+|||+.+..++..+..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~ 54 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF 54 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 566778999999999888877777653
No 222
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.68 E-value=0.011 Score=62.36 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..++|+|+||+||||+++.++..+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999999988763
No 223
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.66 E-value=0.019 Score=57.11 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.|+|.||||+||+|.++.+++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999998765
No 224
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.65 E-value=0.0051 Score=59.89 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|+|++|+||||+++.+++.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999998875
No 225
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.63 E-value=0.0057 Score=60.51 Aligned_cols=26 Identities=31% Similarity=0.361 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..++|.|++|+||||+++.+++.++
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999999885
No 226
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.61 E-value=0.057 Score=60.42 Aligned_cols=42 Identities=14% Similarity=0.034 Sum_probs=32.6
Q ss_pred CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 483 DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 483 ~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
|-..|..++|.|+||+|||+++..++..+... ..++++++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-------g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-------DDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-------TCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-------CCEEEEEECC
Confidence 33357889999999999999999998887643 1457787765
No 227
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.59 E-value=0.011 Score=61.06 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHHHHhhc-C--CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 465 RNKEMEDITAFIKGATC-D--DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 465 Re~e~~~l~~~l~~~i~-~--~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
.+.+++.+...+...+. + ....+..++|.|+||+||||+++.++..+. ..++.+++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~----------~~~~~~~~D~~ 68 (253)
T 2p5t_B 7 TDSEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQ----------GNIVIIDGDSF 68 (253)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTT----------TCCEEECGGGG
T ss_pred CHHHHHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcC----------CCcEEEecHHH
Confidence 34555555444432222 2 112356789999999999999999988775 12566676654
No 228
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.55 E-value=0.012 Score=58.24 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS 535 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s 535 (842)
+..+.|.|++|+||||+++.++..++ .+.+++..+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g------------~~~i~~d~~~~ 65 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETG------------LEFAEADAFHS 65 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHC------------CEEEEGGGGSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC------------CeEEccccccc
Confidence 67899999999999999999988773 46677766654
No 229
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.53 E-value=0.024 Score=63.18 Aligned_cols=142 Identities=15% Similarity=0.190 Sum_probs=74.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCCh-HHHHHHHHHH--Hh------CC-CCCH--
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASP-ENIYRVIYEA--LS------GH-RVSW-- 554 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~-~~~~~~i~~~--l~------g~-~~~~-- 554 (842)
|..++|+|++|+|||+|++.++......... + .+++..-...+. .+++..+.+. +. +. ..+.
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~-----i-~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~ 224 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQEHGG-----I-SVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGA 224 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHHTCC-----C-EEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhhccCc-----E-EEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHH
Confidence 5678999999999999999999887654211 2 344443332222 2333322211 00 00 0011
Q ss_pred H----HHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCCh--------------------HHHHHhhcCCC-CCCC
Q 003175 555 K----KALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRNQ--------------------SVLYNILDWPT-KPNS 609 (842)
Q Consensus 555 ~----~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~~--------------------~~L~~ll~~~~-~~~~ 609 (842)
. ...-.+.++|.+. .++.++||+|++..+....+ ..|-.|++-.. ....
T Consensus 225 r~~~~~~~ltiAEyFrd~------~G~~VLl~~D~itR~a~A~reis~~~ge~P~~~GYp~~~~~~l~~l~ERa~~~~~G 298 (473)
T 1sky_E 225 RMRVALTGLTMAEYFRDE------QGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITSTAKG 298 (473)
T ss_dssp HHHHHHHHHHHHHHHHHH------SCCEEEEEEECTHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHHHTTSSCBSSC
T ss_pred HHHHHHHHHHHHHHHHHh------cCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHHhcCCCCC
Confidence 1 1112455677541 13679999999998875322 12444554332 2345
Q ss_pred cEEEEEEeCCC--CCccccchhhhccCCceeEEe
Q 003175 610 KLIVIGIANTM--DLPEKLLPRISSRMGVQRLCF 641 (842)
Q Consensus 610 ~vivI~~tn~~--dl~~~l~~~l~sR~~~~~i~f 641 (842)
.+..|.+.-.. |+.+-+...+.+-++. .|.+
T Consensus 299 SIT~i~tv~~~~dD~~dpi~~~~~~i~dg-~ivL 331 (473)
T 1sky_E 299 SITSIQAIYVPADDYTDPAPATTFSHLDA-TTNL 331 (473)
T ss_dssp EEEEEEECCCSTTCSSSHHHHHHHTTCSE-EEEB
T ss_pred ceEEEEEEEecCCCCCCcchHHHHhhcCc-eEEe
Confidence 67777665432 3333333355666653 3444
No 230
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.53 E-value=0.052 Score=55.24 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=23.9
Q ss_pred CcEEEEEecCcccccCC-hHHHHHhhcCCCCCCCcEEEE
Q 003175 577 RPCILLIDELDLLVTRN-QSVLYNILDWPTKPNSKLIVI 614 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~-~~~L~~ll~~~~~~~~~vivI 614 (842)
...+|||||+|.+.... ...+..++.... ...+++++
T Consensus 176 ~~~~lViDEah~l~~~~~~~~~~~i~~~~~-~~~q~~~~ 213 (242)
T 3fe2_A 176 RTTYLVLDEADRMLDMGFEPQIRKIVDQIR-PDRQTLMW 213 (242)
T ss_dssp TCCEEEETTHHHHHHTTCHHHHHHHHTTSC-SSCEEEEE
T ss_pred cccEEEEeCHHHHhhhCcHHHHHHHHHhCC-ccceEEEE
Confidence 55799999999987653 556666766542 23344443
No 231
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.51 E-value=0.053 Score=61.86 Aligned_cols=53 Identities=9% Similarity=-0.106 Sum_probs=36.3
Q ss_pred CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHH
Q 003175 483 DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVI 543 (842)
Q Consensus 483 ~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i 543 (842)
|-..+..++|.|+||+|||+++..++..+.... ...+++++... +..++...+
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~------g~~vl~~s~E~--s~~~l~~r~ 290 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM------GKKVGLAMLEE--SVEETAEDL 290 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS------CCCEEEEESSS--CHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhc------CCcEEEEeccC--CHHHHHHHH
Confidence 334578899999999999999999988775321 13477776543 344444443
No 232
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.47 E-value=0.021 Score=56.43 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=19.3
Q ss_pred CcEEEEEecCcccccCC-hHHHHHhhcC
Q 003175 577 RPCILLIDELDLLVTRN-QSVLYNILDW 603 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~-~~~L~~ll~~ 603 (842)
...+|||||+|.+.... ...+..++..
T Consensus 144 ~~~~iViDEah~~~~~~~~~~~~~i~~~ 171 (207)
T 2gxq_A 144 RVEVAVLDEADEMLSMGFEEEVEALLSA 171 (207)
T ss_dssp TCSEEEEESHHHHHHTTCHHHHHHHHHT
T ss_pred hceEEEEEChhHhhccchHHHHHHHHHh
Confidence 45799999999986543 4556666654
No 233
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.46 E-value=0.02 Score=56.34 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+...+++|+.|+|||+++..++..+..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~ 34 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKI 34 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 567889999999999998888887753
No 234
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=95.45 E-value=0.0016 Score=60.72 Aligned_cols=53 Identities=25% Similarity=0.668 Sum_probs=41.5
Q ss_pred ccccccccceeecccccccccCc--cCCCccccccCCCCCCC------CCCCCcccccccccc
Q 003175 184 EDPEVEECRICFRAGRSVMLECD--DCLGGFHLKCLKPPLKE------VPEGEWVCEFCEARK 238 (842)
Q Consensus 184 ~~~~~~~C~~C~~~~~~~~l~Cd--~C~~~~H~~C~~p~l~~------~p~~~W~C~~C~~~~ 238 (842)
++.-+.||.+|+.++. +++|| .|.+.|=..|+.--+.. .....|.|-.|....
T Consensus 75 eDG~~~yC~wC~~Gg~--l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 75 DDGYQSYCTICCGGRE--VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp TTSSBSSCTTTSCCSE--EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred CCCCcceeeEecCCCe--EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 3444679999999887 99999 89999999998733222 345689999999765
No 235
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.42 E-value=0.011 Score=56.86 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=29.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS 535 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s 535 (842)
+..++|.|++|+||||+++.++..++ .+++++..+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g------------~~~i~~d~~~~ 44 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH------------AAFLDGDFLHP 44 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT------------CEEEEGGGGCC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC------------cEEEeCccccc
Confidence 67899999999999999999988764 45667666553
No 236
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.39 E-value=0.019 Score=61.67 Aligned_cols=47 Identities=19% Similarity=0.424 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 466 NKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 466 e~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+.-.+.+...+...+..+. ..+++|+|++|+|||++++.++..+...
T Consensus 5 ~~L~~~il~~l~~~i~~g~--~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNY--RVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCS--CEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCC--eeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4445566666666665554 4579999999999999999999998843
No 237
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.38 E-value=0.0075 Score=58.47 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|+|++|+|||++++.+++.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999998875
No 238
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.38 E-value=0.0081 Score=57.66 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+.|+|++|+||||+++.++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999988875
No 239
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.31 E-value=0.0092 Score=57.08 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=21.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.|+|.|++|+||||+++.+++.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998875
No 240
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.27 E-value=0.027 Score=56.46 Aligned_cols=28 Identities=21% Similarity=0.527 Sum_probs=19.4
Q ss_pred CCcEEEEEecCcccccCC-hHHHHHhhcC
Q 003175 576 DRPCILLIDELDLLVTRN-QSVLYNILDW 603 (842)
Q Consensus 576 ~~~~IlilDEid~L~~~~-~~~L~~ll~~ 603 (842)
....+|||||+|.+.... ...+..++..
T Consensus 154 ~~~~~iViDEah~~~~~~~~~~l~~i~~~ 182 (224)
T 1qde_A 154 DKIKMFILDEADEMLSSGFKEQIYQIFTL 182 (224)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHH
T ss_pred hhCcEEEEcChhHHhhhhhHHHHHHHHHh
Confidence 345799999999987643 4456666654
No 241
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.26 E-value=0.11 Score=51.26 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 462 LPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 462 L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+.-|.-|.+.+..++. +..++|.+|+|+|||.++..++..+.
T Consensus 32 ~~l~~~Q~~~i~~~~~---------~~~~li~~~tGsGKT~~~~~~~~~~~ 73 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALE---------GKNIIICLPTGSGKTRVAVYIAKDHL 73 (216)
T ss_dssp CCCCHHHHHHHHHHHT---------TCCEEEECSCHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhc---------CCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4556777766655542 35689999999999999887776554
No 242
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.23 E-value=0.012 Score=57.36 Aligned_cols=27 Identities=37% Similarity=0.637 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+..|+|.|++|+||||+++.+++.++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999998873
No 243
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.23 E-value=0.12 Score=55.34 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=38.8
Q ss_pred ccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHH
Q 003175 485 CLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEAL 547 (842)
Q Consensus 485 ~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l 547 (842)
..|..++|.|+||+|||+++..++..+... ...+++++.. .+..++...+....
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-------g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALND-------DRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHT-------TCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 357889999999999999999999887642 1457777654 45556665554443
No 244
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.19 E-value=0.018 Score=56.92 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=35.1
Q ss_pred CcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 464 CRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 464 gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
.|++.++.|.+.+...- .. .+..+.|.|++|+||||+++.++..+..
T Consensus 2 ~~~~~~~~l~~~~~~~~-~~--~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK-TA--GRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSC-CS--SSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc-cC--CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45667777777665431 11 2567889999999999999999988864
No 245
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.18 E-value=0.015 Score=68.59 Aligned_cols=41 Identities=27% Similarity=0.402 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 465 RNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 465 Re~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
-+.|.+.|...|.. ....||.||||||||+++-.++.++..
T Consensus 191 N~~Q~~AV~~al~~--------~~~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ--------KELAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp CHHHHHHHHHHHHC--------SSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC--------CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 35666666666542 346789999999999988877777664
No 246
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.17 E-value=0.01 Score=57.88 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH-HH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRS-LR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~-l~ 512 (842)
+..++|+|++|+||||+++.+++. ++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 568999999999999999999987 44
No 247
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.15 E-value=0.029 Score=71.95 Aligned_cols=97 Identities=21% Similarity=0.233 Sum_probs=66.9
Q ss_pred HHHhhc-CCcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCC---
Q 003175 476 IKGATC-DDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHR--- 551 (842)
Q Consensus 476 l~~~i~-~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~--- 551 (842)
|..++- ++-+.|+.+.||||+|+|||+|+..++.+..... -..++|+...-.++. | +..+ |..
T Consensus 1419 lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g-------~~~~~i~~e~~~~~~--~---~~~~-Gv~~~~ 1485 (1706)
T 3cmw_A 1419 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG-------KTCAFIDAEHALDPI--Y---ARKL-GVDIDN 1485 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEECTTSCCCHH--H---HHHT-TCCGGG
T ss_pred HHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcC-------CeEEEEecCCCCCHH--H---HHHc-CCCHHH
Confidence 333444 2444578899999999999999999998776542 237888887666652 2 3332 332
Q ss_pred ------CCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC
Q 003175 552 ------VSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN 593 (842)
Q Consensus 552 ------~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~ 593 (842)
.+.++++..++...... .+.+||||.+..|.++.
T Consensus 1486 l~~~~p~~~e~~l~~~~~~~~s~--------~~~~vvvDsv~al~~~~ 1525 (1706)
T 3cmw_A 1486 LLCSQPDTGEQALEICDALARSG--------AVDVIVVDSVAALTPKA 1525 (1706)
T ss_dssp CEEECCSSHHHHHHHHHHHHHHT--------CCSEEEESCSTTCCCTT
T ss_pred eEEeCCCcHHHHHHHHHHHHHcC--------CCCEEEEccHHhCCccc
Confidence 34566777776666543 56899999999998863
No 248
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.13 E-value=0.039 Score=53.97 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
.|.|.|++|+||||+++.+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999998853
No 249
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.08 E-value=0.01 Score=57.69 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
..|+|+|+||+|||++++.+++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4589999999999999999999876
No 250
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.07 E-value=0.014 Score=56.18 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.++|.|+||+||||+++.+++.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998876
No 251
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.01 E-value=0.015 Score=56.86 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|.|+||+||||+++.+++.++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56789999999999999999998875
No 252
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.99 E-value=0.026 Score=61.08 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=29.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEE
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEV 528 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~i 528 (842)
|..+.|.|++|+|||+|++.+++.+..... ++.+|++
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~-----~v~~I~~ 210 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHP-----DCVLMVL 210 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCT-----TSEEEEE
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCC-----CeeEEEE
Confidence 788999999999999999999998875422 2555554
No 253
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.97 E-value=0.016 Score=55.32 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
-.+++|.|++|+||||+++.+++.++
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999886
No 254
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.97 E-value=0.009 Score=58.39 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~ 510 (842)
|..+.|.|++|+||||+++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 678999999999999999998775
No 255
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.92 E-value=0.014 Score=57.77 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..++|.|++|+||||+++.+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998875
No 256
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.88 E-value=0.06 Score=54.79 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=15.7
Q ss_pred CCeEEEEcCCCChHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVL 505 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~ 505 (842)
++.+++.+|+|+|||....
T Consensus 66 ~~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAFS 84 (245)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHH
Confidence 3568999999999998743
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.84 E-value=0.028 Score=55.92 Aligned_cols=43 Identities=26% Similarity=0.459 Sum_probs=31.8
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
.+..+.|.||+|+|||||++.++..+... + +...+|.+++..+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~---g--~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQ---G--LPAEVVPMDGFHL 63 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHT---T--CCEEEEESGGGBC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc---C--CceEEEecCCCcC
Confidence 36788899999999999999999988732 1 1244666666544
No 258
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.82 E-value=0.058 Score=53.15 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=18.8
Q ss_pred CcEEEEEecCcccccCC-hHHHHHhhcC
Q 003175 577 RPCILLIDELDLLVTRN-QSVLYNILDW 603 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~-~~~L~~ll~~ 603 (842)
...+|||||+|.+.... ...+..++..
T Consensus 146 ~~~~lViDEah~~~~~~~~~~l~~i~~~ 173 (206)
T 1vec_A 146 HVQMIVLDEADKLLSQDFVQIMEDIILT 173 (206)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred cCCEEEEEChHHhHhhCcHHHHHHHHHh
Confidence 55799999999987643 4555555543
No 259
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.77 E-value=0.016 Score=56.54 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
.|+|.|+||+||||+++.+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999998873
No 260
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.73 E-value=0.017 Score=56.08 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+.|.||+|+|||||++.++..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67889999999999999999988653
No 261
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.72 E-value=0.019 Score=56.69 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+.|.|++|+||||+++.++..+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999987
No 262
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.70 E-value=0.18 Score=53.11 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=30.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
+..+.|.|++|+||||++..++..+.... | ..+..+.+..+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~--G----~~V~lv~~D~~ 145 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEK--H----KKIAFITTDTY 145 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTT--C----CCEEEEECCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--C----CEEEEEecCcc
Confidence 67899999999999999999999887421 1 23555665543
No 263
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.70 E-value=0.015 Score=59.98 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.++|.||+|+||||+++.+++.++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 478999999999999999998875
No 264
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.69 E-value=0.11 Score=52.42 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=20.0
Q ss_pred CcEEEEEecCcccccCC-hHHHHHhhcCC
Q 003175 577 RPCILLIDELDLLVTRN-QSVLYNILDWP 604 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~-~~~L~~ll~~~ 604 (842)
...+|||||+|.+.... ...+..++...
T Consensus 171 ~~~~lViDEah~~~~~~~~~~~~~i~~~~ 199 (236)
T 2pl3_A 171 DLQMLVLDEADRILDMGFADTMNAVIENL 199 (236)
T ss_dssp TCCEEEETTHHHHHHTTTHHHHHHHHHTS
T ss_pred cccEEEEeChHHHhcCCcHHHHHHHHHhC
Confidence 45699999999987643 45666666643
No 265
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.68 E-value=0.075 Score=57.22 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHH
Q 003175 465 RNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 465 Re~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l 511 (842)
+.-|.+.+..++.. +..+++.+|+|+|||.++-..+..+
T Consensus 30 ~~~Q~~~i~~~~~~--------~~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 30 TDIQMKVIPLFLND--------EYNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp CHHHHHHHHHHHHT--------CSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC--------CCCEEEECCCCChHHHHHHHHHHHH
Confidence 45555555554432 3678999999999998866554443
No 266
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.65 E-value=0.019 Score=54.72 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=19.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.|+|.|+||+||||+++.+ +.++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC
Confidence 5789999999999999988 5543
No 267
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.65 E-value=0.018 Score=56.00 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..++|.|++|+||||+++.+++.++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998775
No 268
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.63 E-value=0.057 Score=59.96 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|+|+||+||||+++.+++.++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57889999999999999999887664
No 269
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.62 E-value=0.068 Score=53.69 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=22.8
Q ss_pred CcEEEEEecCcccccCC-hHHHHHhhcCCCCCCCcEEEE
Q 003175 577 RPCILLIDELDLLVTRN-QSVLYNILDWPTKPNSKLIVI 614 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~-~~~L~~ll~~~~~~~~~vivI 614 (842)
...+|||||+|.+.... ...+..++.... ...+++++
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~-~~~~~l~~ 204 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDVR-PDRQTVMT 204 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHSC-SSCEEEEE
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhCC-cCCeEEEE
Confidence 45799999999987653 455555555332 23344443
No 270
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.61 E-value=0.023 Score=54.88 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=30.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
+..+.|.|++|+||||+++.++..+... .+.++.+++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~-------g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCH-------GIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhC-------CCcEEEECChH
Confidence 6788999999999999999999988531 14577776543
No 271
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.58 E-value=0.018 Score=55.45 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMR 509 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~ 509 (842)
..|+|.|+||+||||+++.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4688999999999999999887
No 272
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.58 E-value=0.018 Score=57.12 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..++|.||+|+||||+++.++..+.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 67899999999999999999988774
No 273
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.56 E-value=0.02 Score=55.97 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+.|+|+||+|+|||+|++.+++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4589999999999999999887764
No 274
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.56 E-value=0.022 Score=55.54 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|.|+||+||||+++.+++.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999988775
No 275
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.56 E-value=0.024 Score=55.94 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|.|+||+||||+++.+++.++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999998875
No 276
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.55 E-value=0.092 Score=60.18 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=31.3
Q ss_pred CcccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 483 DQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 483 ~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
+-..|..++|.|++|+|||+|++.++..+... + -.++++....
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G----~~vi~~~~ee 319 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACAN---K----ERAILFAYEE 319 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT---T----CCEEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---C----CCEEEEEEeC
Confidence 33347889999999999999999999876532 2 1356666543
No 277
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.53 E-value=0.078 Score=54.76 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=19.2
Q ss_pred CcEEEEEecCcccccCC-hHHHHHhhcC
Q 003175 577 RPCILLIDELDLLVTRN-QSVLYNILDW 603 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~-~~~L~~ll~~ 603 (842)
...+|||||+|.+.... ...+..++..
T Consensus 201 ~l~~lViDEah~l~~~~~~~~l~~i~~~ 228 (262)
T 3ly5_A 201 NLQCLVIDEADRILDVGFEEELKQIIKL 228 (262)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHH
T ss_pred cCCEEEEcChHHHhhhhHHHHHHHHHHh
Confidence 45789999999987653 4556666654
No 278
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.51 E-value=0.045 Score=54.73 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=19.9
Q ss_pred CcEEEEEecCcccccCC-hHHHHHhhcCC
Q 003175 577 RPCILLIDELDLLVTRN-QSVLYNILDWP 604 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~-~~~L~~ll~~~ 604 (842)
...+|||||+|.+.... ...+..++...
T Consensus 150 ~~~~lViDEah~~~~~~~~~~l~~i~~~~ 178 (219)
T 1q0u_A 150 TAHILVVDEADLMLDMGFITDVDQIAARM 178 (219)
T ss_dssp GCCEEEECSHHHHHHTTCHHHHHHHHHTS
T ss_pred cceEEEEcCchHHhhhChHHHHHHHHHhC
Confidence 45789999999987643 45566666643
No 279
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.50 E-value=0.026 Score=54.02 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
..|+|.|++|+|||++++.+++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999999876
No 280
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.45 E-value=0.026 Score=55.19 Aligned_cols=26 Identities=19% Similarity=0.469 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|.|++|+||||+++.+++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999998875
No 281
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.43 E-value=0.053 Score=57.00 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 469 MEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 469 ~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+..|.+.+..........+..+.|.|++|+||||+++.++..+...
T Consensus 13 ~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 13 IEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp HHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4444444444322222235678899999999999999999998753
No 282
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.42 E-value=0.027 Score=55.18 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|.|++|+||||+++.+++.++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999999876
No 283
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.39 E-value=0.028 Score=56.37 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|.|+||+||||+++.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56789999999999999999998875
No 284
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.35 E-value=0.022 Score=56.42 Aligned_cols=26 Identities=19% Similarity=0.384 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|.|++|+||||+++.+++.+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46789999999999999999999886
No 285
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=94.34 E-value=0.042 Score=55.77 Aligned_cols=27 Identities=22% Similarity=0.467 Sum_probs=19.3
Q ss_pred CcEEEEEecCcccccCC-hHHHHHhhcC
Q 003175 577 RPCILLIDELDLLVTRN-QSVLYNILDW 603 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~-~~~L~~ll~~ 603 (842)
...+|||||+|.+.... ...+..++..
T Consensus 173 ~~~~lViDEah~~~~~~~~~~l~~i~~~ 200 (237)
T 3bor_A 173 WIKMFVLDEADEMLSRGFKDQIYEIFQK 200 (237)
T ss_dssp TCCEEEEESHHHHHHTTCHHHHHHHHHH
T ss_pred cCcEEEECCchHhhccCcHHHHHHHHHh
Confidence 45799999999887543 4556666654
No 286
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.33 E-value=0.046 Score=53.07 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=19.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l 511 (842)
-.++|.|.+|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 468899999999999997665543
No 287
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.28 E-value=0.027 Score=55.93 Aligned_cols=27 Identities=19% Similarity=0.444 Sum_probs=24.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+..|+|.|++|+||||+++.+++.++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999998874
No 288
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.23 E-value=0.032 Score=61.76 Aligned_cols=23 Identities=35% Similarity=0.745 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMR 509 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~ 509 (842)
.+..+|.|+||+|||+++..+++
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Confidence 46778999999999999987764
No 289
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.22 E-value=0.033 Score=56.45 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|.|+||+||||+++.+++.++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999999876
No 290
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.21 E-value=0.022 Score=56.76 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||+|+||||+++.++..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999988764
No 291
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.16 E-value=0.52 Score=49.56 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS 535 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s 535 (842)
+..+.|.|++|+||||++..++..+.... ..+..+++.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g-------~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG-------FKVGLVGADVYRP 139 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT-------CCEEEEECCCSSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC-------CeEEEEecCCCCH
Confidence 55788999999999999999999887431 2366666654443
No 292
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.14 E-value=0.034 Score=55.65 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|.|+||+||||+++.+++.++
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999999999875
No 293
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.08 E-value=0.017 Score=55.83 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|.|+||+||||+++.+++.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56789999999999999999988876
No 294
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.08 E-value=0.083 Score=56.53 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+..+.|.||+|+|||||++.++..+...
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 6788999999999999999999988643
No 295
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.08 E-value=0.033 Score=54.18 Aligned_cols=27 Identities=30% Similarity=0.607 Sum_probs=24.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+..++|.|++|+||||+++.++..+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 678899999999999999999999874
No 296
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.06 E-value=0.034 Score=52.90 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.|+|.|++|+||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998876
No 297
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.06 E-value=0.032 Score=55.44 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+..|+|.|++|+||||+++.+++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567999999999999999999999874
No 298
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=94.05 E-value=0.18 Score=52.58 Aligned_cols=41 Identities=7% Similarity=-0.003 Sum_probs=29.6
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 463 PCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 463 ~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.-+.-|.+.+..++.. ...+|.+++|+|||.++-.++..+.
T Consensus 113 ~l~~~Q~~ai~~~l~~---------~~~ll~~~tGsGKT~~~~~~~~~~~ 153 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVN---------RRRILNLPTSAGRSLIQALLARYYL 153 (282)
T ss_dssp CCCHHHHHHHHHHHHH---------SEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhc---------CCeEEEcCCCCCcHHHHHHHHHHHH
Confidence 4566677777666653 2357899999999999877766554
No 299
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.05 E-value=0.032 Score=59.34 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..++|+||+|+|||++++.+++.++
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999999875
No 300
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.96 E-value=0.031 Score=56.35 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|.|+||+||||+++.+++.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998775
No 301
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.96 E-value=0.034 Score=54.09 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|.|++|+||||+++.+++.++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988775
No 302
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.95 E-value=0.24 Score=50.52 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=19.7
Q ss_pred CcEEEEEecCcccccCC-hHHHHHhhcC
Q 003175 577 RPCILLIDELDLLVTRN-QSVLYNILDW 603 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~-~~~L~~ll~~ 603 (842)
...+|||||+|.+.... ...+..++..
T Consensus 174 ~~~~lViDEah~~~~~~~~~~~~~i~~~ 201 (253)
T 1wrb_A 174 FCKYIVLDEADRMLDMGFEPQIRKIIEE 201 (253)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHS
T ss_pred hCCEEEEeCHHHHHhCchHHHHHHHHhh
Confidence 45689999999987653 4566677764
No 303
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.95 E-value=0.14 Score=56.11 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHH
Q 003175 465 RNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVM 508 (842)
Q Consensus 465 Re~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~ 508 (842)
+.-|.+.+..++. +..+++.+|+|+|||..+-..+
T Consensus 45 ~~~Q~~~i~~i~~---------~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 45 SPIQEEAIPVAIT---------GRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CHHHHHHHHHHHH---------TCCEEEECCTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---------CCCEEEECCCCcHHHHHHHHHH
Confidence 4555555544442 3558999999999998665443
No 304
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.95 E-value=0.03 Score=55.83 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.|+|.|+||+||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988775
No 305
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.89 E-value=0.089 Score=52.86 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+...+++|+.|+|||+.+-..+....
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~ 44 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ 44 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67788999999999976655555544
No 306
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.88 E-value=0.033 Score=55.89 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|.|+||+||||+++.+++.++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998875
No 307
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.88 E-value=0.17 Score=55.01 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=17.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVM 508 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~ 508 (842)
+..+++.+|+|+|||..+-..+
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 4789999999999998765433
No 308
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.87 E-value=0.033 Score=54.89 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l 511 (842)
|..+.|.||+|+|||||++.++..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5778899999999999999988764
No 309
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=93.85 E-value=0.12 Score=55.00 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~ 510 (842)
++.+++.+|+|+|||.++-..+-.
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHh
Confidence 356899999999999876555433
No 310
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.81 E-value=0.03 Score=55.87 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.|+|+|+||+||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988764
No 311
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.80 E-value=0.035 Score=54.68 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.6
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.+..+.|+||+|+|||+|++.++..+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 367899999999999999999987654
No 312
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.77 E-value=0.035 Score=54.76 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+.|.||+|+|||||++.++..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 57789999999999999999988663
No 313
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.73 E-value=0.033 Score=54.33 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
..+.|.||+|+|||||++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998775
No 314
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.70 E-value=0.074 Score=58.02 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=23.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.+..++|+||+|+||||+++.++..+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 367899999999999999999997653
No 315
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.69 E-value=0.04 Score=56.36 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+.|.|++|+||||+++.+++.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998775
No 316
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.67 E-value=0.031 Score=55.11 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l 511 (842)
|..+.|.|++|+||||+++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 6788999999999999999988766
No 317
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.64 E-value=0.13 Score=51.65 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=18.1
Q ss_pred CCeEEEEcCCCChHHHHH-HHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSV-LAVMRSL 511 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~-~~v~~~l 511 (842)
+..+++.+|+|+|||... -.++..+
T Consensus 61 ~~~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 467899999999999874 3334443
No 318
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.63 E-value=0.044 Score=56.28 Aligned_cols=26 Identities=42% Similarity=0.667 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..++|.|++|+||||+++.++..++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56799999999999999999999886
No 319
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.61 E-value=0.04 Score=54.16 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.|+|.|++|+||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999999886
No 320
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=93.60 E-value=0.11 Score=54.91 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=18.5
Q ss_pred CCeEEEEcCCCChHHHHHH-HHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVL-AVMRSL 511 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~-~v~~~l 511 (842)
++.+++.+|+|+|||.... .++..+
T Consensus 131 ~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCccHHHHHHHHHhh
Confidence 4789999999999997643 344443
No 321
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.60 E-value=0.25 Score=50.47 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=19.6
Q ss_pred CcEEEEEecCcccccCC-hHHHHHhhcCC
Q 003175 577 RPCILLIDELDLLVTRN-QSVLYNILDWP 604 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~-~~~L~~ll~~~ 604 (842)
...+|||||+|.+.... ...+..++...
T Consensus 186 ~~~~lViDEah~l~~~~~~~~l~~i~~~~ 214 (249)
T 3ber_A 186 ALKYLVMDEADRILNMDFETEVDKILKVI 214 (249)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHSS
T ss_pred ccCEEEEcChhhhhccChHHHHHHHHHhC
Confidence 45699999999887643 45566666643
No 322
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.59 E-value=0.049 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
.|.|.|++|+||||+++.+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998853
No 323
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.55 E-value=0.38 Score=47.77 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=17.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~ 510 (842)
..+++.+|+|+|||.++-..+-.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHH
Confidence 56899999999999876554443
No 324
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.53 E-value=0.041 Score=54.23 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|.|++|+||||+++.+++.++
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45788999999999999999988765
No 325
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.51 E-value=0.76 Score=50.97 Aligned_cols=43 Identities=23% Similarity=0.222 Sum_probs=33.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCC
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLAS 535 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s 535 (842)
+..++|+|++|+||||++-.++..+.... + ..+.-+++.....
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~--G----~kVllvd~D~~r~ 142 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKH--K----KKVLVVSADVYRP 142 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTS--C----CCEEEEECCCSST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhc--C----CeEEEEecCCCCc
Confidence 56888999999999999999999987531 1 3467777766554
No 326
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.49 E-value=0.19 Score=60.26 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHH
Q 003175 468 EMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 468 e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~ 510 (842)
+.+.|...+.. +..++|.||+|+|||+++..++..
T Consensus 98 q~~~i~~~l~~--------~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 98 QRDEFLKLYQN--------NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp GHHHHHHHHHH--------CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 34445555544 578999999999999987776444
No 327
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.47 E-value=0.034 Score=54.21 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMR 509 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~ 509 (842)
..+.|.||+|+||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4678999999999999999976
No 328
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.45 E-value=0.055 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=22.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
..+.|.|++|+||||+++.++..++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999988875
No 329
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.44 E-value=0.044 Score=56.61 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+..|+|.|+||+||||+++.++..+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~ 30 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSK 30 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999998763
No 330
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.41 E-value=0.31 Score=54.29 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=20.7
Q ss_pred CCcEEEEEecCcccccCC-hHHHHHhhcCC
Q 003175 576 DRPCILLIDELDLLVTRN-QSVLYNILDWP 604 (842)
Q Consensus 576 ~~~~IlilDEid~L~~~~-~~~L~~ll~~~ 604 (842)
....+|||||+|.+.... ...+..++...
T Consensus 202 ~~~~~lVlDEah~~~~~gf~~~~~~i~~~~ 231 (434)
T 2db3_A 202 EDTRFVVLDEADRMLDMGFSEDMRRIMTHV 231 (434)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHCT
T ss_pred ccCCeEEEccHhhhhccCcHHHHHHHHHhc
Confidence 355799999999987654 45566666643
No 331
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.35 E-value=0.052 Score=54.61 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.|+|.|+||+||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998875
No 332
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.35 E-value=0.052 Score=54.04 Aligned_cols=38 Identities=16% Similarity=0.381 Sum_probs=29.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEec
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNG 530 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~ 530 (842)
+..++|.|++|+||||+++.++..+..... +.++++++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g------~~~~~~~~ 62 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRR------VHAYRLDG 62 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHC------CCEEEECH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccC------CcEEEECC
Confidence 678899999999999999999998873211 34677764
No 333
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.27 E-value=0.047 Score=54.89 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||+|+|||||++.++..+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 77899999999999999999888764
No 334
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.27 E-value=0.088 Score=57.87 Aligned_cols=37 Identities=19% Similarity=0.485 Sum_probs=23.4
Q ss_pred CcEEEEEecCcccccCC-hHHHHHhhcCCCCCCCcEEEE
Q 003175 577 RPCILLIDELDLLVTRN-QSVLYNILDWPTKPNSKLIVI 614 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~-~~~L~~ll~~~~~~~~~vivI 614 (842)
...+|||||+|.+.... ...+..++.... ...+++++
T Consensus 183 ~~~~vViDEah~~~~~~~~~~~~~~~~~~~-~~~~~i~~ 220 (414)
T 3eiq_A 183 YIKMFVLDEADEMLSRGFKDQIYDIFQKLN-SNTQVVLL 220 (414)
T ss_dssp TCCEEEECSHHHHHHTTTHHHHHHHHTTSC-TTCEEEEE
T ss_pred cCcEEEEECHHHhhccCcHHHHHHHHHhCC-CCCeEEEE
Confidence 45699999999987553 456667766432 23344443
No 335
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.25 E-value=0.051 Score=53.99 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=25.6
Q ss_pred CcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCCCCCc
Q 003175 577 RPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANTMDLP 623 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~~dl~ 623 (842)
...+|+|||++.|....-+.|..+.+ .+.+|++-|. +.|+.
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la~----~gi~Vi~~GL--d~DF~ 141 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLSA----DGHRVIVAGL--DMDFR 141 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHHH----TTCEEEEEEE--SBCTT
T ss_pred CCCEEEEechhcCCHHHHHHHHHHHH----CCCEEEEeec--ccccc
Confidence 45799999999987543445555543 2555666555 44444
No 336
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.24 E-value=0.04 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l 511 (842)
+..|.|.|++|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999998877
No 337
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=93.19 E-value=0.15 Score=63.04 Aligned_cols=91 Identities=12% Similarity=0.125 Sum_probs=48.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCC---------------
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHR--------------- 551 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~--------------- 551 (842)
+..+++.||+|+|||.++...+..+... ....+++.... .-..+.+..+.+.+.+..
T Consensus 54 g~~vlv~apTGsGKTlv~~~~i~~~~~~-------g~~vlvl~Ptr-aLa~Q~~~~l~~~~~~~~v~~l~G~~~~~~~~~ 125 (997)
T 4a4z_A 54 GDSVFVAAHTSAGKTVVAEYAIAMAHRN-------MTKTIYTSPIK-ALSNQKFRDFKETFDDVNIGLITGDVQINPDAN 125 (997)
T ss_dssp TCEEEEECCTTSCSHHHHHHHHHHHHHT-------TCEEEEEESCG-GGHHHHHHHHHTTC--CCEEEECSSCEECTTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHhc-------CCeEEEEeCCH-HHHHHHHHHHHHHcCCCeEEEEeCCCccCCCCC
Confidence 4679999999999998766555444321 13455555432 223344555444322211
Q ss_pred ---CCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccC
Q 003175 552 ---VSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTR 592 (842)
Q Consensus 552 ---~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~ 592 (842)
.+.......+. ..... -....+|||||+|.+...
T Consensus 126 IlV~Tpe~L~~~l~---~~~~~----l~~l~lvViDEaH~l~d~ 162 (997)
T 4a4z_A 126 CLIMTTEILRSMLY---RGADL----IRDVEFVIFDEVHYVNDQ 162 (997)
T ss_dssp EEEEEHHHHHHHHH---HTCSG----GGGEEEEEECCTTCCCTT
T ss_pred EEEECHHHHHHHHH---hCchh----hcCCCEEEEECccccccc
Confidence 12222222222 11111 135689999999998764
No 338
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.15 E-value=0.39 Score=44.62 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=19.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~ 510 (842)
-.++|.|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999988753
No 339
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.14 E-value=0.048 Score=57.38 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..++|+||+|+|||+|+..+++.+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45788999999999999999998865
No 340
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.12 E-value=0.05 Score=54.23 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.|+|.|+||+||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998774
No 341
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.00 E-value=0.04 Score=58.80 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|+|.||+|+|||+|+..+++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 45789999999999999999999876
No 342
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.90 E-value=0.052 Score=57.21 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..++|.||+|+|||+|+..+++.+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 35688999999999999999998875
No 343
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.89 E-value=0.072 Score=62.44 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 465 RNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 465 Re~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
.+.|.+.+...+. ...++|.||||||||+++..++..+..
T Consensus 182 n~~Q~~av~~~l~---------~~~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ---------RPLSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp CHHHHHHHHHHHT---------CSEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhc---------CCCeEEECCCCCCHHHHHHHHHHHHHH
Confidence 3556555555442 246789999999999999988887753
No 344
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.88 E-value=0.059 Score=53.13 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.+.|+|++|+||||+++.++. ++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC
Confidence 478999999999999999988 64
No 345
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.87 E-value=0.061 Score=51.00 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l 511 (842)
+..+.|.||.|+|||||++.++..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 6788999999999999999999988
No 346
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.78 E-value=0.082 Score=53.52 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+.|.||+|+||||+++.+++.++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998886
No 347
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.75 E-value=0.097 Score=58.39 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCChHHHHH-HHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSV-LAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~-~~v~~~l~ 512 (842)
++.+++.||+|+|||..+ ..++..+.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~ 28 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAV 28 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999975 54554443
No 348
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=92.74 E-value=0.27 Score=55.27 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHH
Q 003175 463 PCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 463 ~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l 511 (842)
.-+..|.+.+..++. +..++|.|++|+|||.++-.++..+
T Consensus 93 ~l~~~Q~~ai~~i~~---------~~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 93 SLRDYQEKALERWLV---------DKRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp CBCHHHHHHHHHHTT---------TTEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHh---------cCCEEEEeCCCCCHHHHHHHHHHHc
Confidence 345666666654432 2448999999999999988777665
No 349
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.73 E-value=0.069 Score=55.23 Aligned_cols=27 Identities=15% Similarity=0.408 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+..+.|+||+|+|||||++.++..+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 678999999999999999999998764
No 350
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=92.66 E-value=0.46 Score=58.72 Aligned_cols=92 Identities=13% Similarity=0.187 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHh------CCC---------
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALS------GHR--------- 551 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~------g~~--------- 551 (842)
+.++++.+|+|+|||.++...+...... ....+++.... .-..+.+..+...+. |..
T Consensus 101 g~~vLV~apTGSGKTlva~lai~~~l~~-------g~rvL~l~Ptk-aLa~Q~~~~l~~~~~~vglltGd~~~~~~~~Iv 172 (1010)
T 2xgj_A 101 GESVLVSAHTSAGKTVVAEYAIAQSLKN-------KQRVIYTSPIK-ALSNQKYRELLAEFGDVGLMTGDITINPDAGCL 172 (1010)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHT-------TCEEEEEESSH-HHHHHHHHHHHHHHSCEEEECSSCEECTTCSEE
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHhcc-------CCeEEEECChH-HHHHHHHHHHHHHhCCEEEEeCCCccCCCCCEE
Confidence 4679999999999999875544433221 13567765432 112234444444331 111
Q ss_pred -CCHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCcccccCC
Q 003175 552 -VSWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVTRN 593 (842)
Q Consensus 552 -~~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~~~ 593 (842)
.+.......+.. ... .-....+|||||+|.+....
T Consensus 173 V~Tpe~L~~~L~~---~~~----~l~~l~lVViDEaH~l~d~~ 208 (1010)
T 2xgj_A 173 VMTTEILRSMLYR---GSE----VMREVAWVIFDEVHYMRDKE 208 (1010)
T ss_dssp EEEHHHHHHHHHH---TCT----TGGGEEEEEEETGGGGGCTT
T ss_pred EEcHHHHHHHHHc---Ccc----hhhcCCEEEEechhhhcccc
Confidence 122222222221 111 11355799999999997653
No 351
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.65 E-value=0.066 Score=53.10 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||+|+|||||++.++..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67888999999999999999988763
No 352
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.63 E-value=0.062 Score=53.86 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l 511 (842)
|..+.|.||+|+|||||++.++..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 6788999999999999999998865
No 353
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=92.61 E-value=0.46 Score=52.08 Aligned_cols=38 Identities=18% Similarity=0.533 Sum_probs=24.6
Q ss_pred CCcEEEEEecCcccccCC-hHHHHHhhcCCCCCCCcEEEE
Q 003175 576 DRPCILLIDELDLLVTRN-QSVLYNILDWPTKPNSKLIVI 614 (842)
Q Consensus 576 ~~~~IlilDEid~L~~~~-~~~L~~ll~~~~~~~~~vivI 614 (842)
....+|||||+|.+.... ...+..++.... ...+++++
T Consensus 178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~-~~~~~i~~ 216 (410)
T 2j0s_A 178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLP-PATQVVLI 216 (410)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSC-TTCEEEEE
T ss_pred hheeEEEEccHHHHHhhhhHHHHHHHHHhCc-cCceEEEE
Confidence 345799999999987654 466777776432 23444444
No 354
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.51 E-value=0.27 Score=51.84 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=24.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+..+.|.||.|+|||||++.++..+...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 6688899999999999999999988743
No 355
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.47 E-value=0.24 Score=59.17 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCChHHHHH-HHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 487 GRCLYIHGVPGTGKTMSV-LAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~-~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
+.++++.||+|+|||+.+ ..+++.+... + ..++++...
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~---~----~~~l~i~P~ 77 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQ---G----GKAVYIVPL 77 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHH---C----SEEEEECSS
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhC---C----CEEEEEcCc
Confidence 578999999999999988 4444444422 1 456776544
No 356
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.47 E-value=0.086 Score=54.11 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+.|.|++|+||||+++.+++.|+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56889999999999999999999886
No 357
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.47 E-value=0.32 Score=54.07 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccC
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKL 533 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~ 533 (842)
+..++|+|++|+||||++..++..+.... ..++.+++..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G-------~kVllv~~D~~ 138 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG-------LKPALIAADTY 138 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH-------CCEEEECCSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC-------CeEEEEecccc
Confidence 45899999999999999999999887542 34666666543
No 358
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.46 E-value=0.1 Score=56.56 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+..++|.||+|+|||||+++++..+...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 4689999999999999999999988754
No 359
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.39 E-value=0.083 Score=55.80 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=24.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHH
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l 511 (842)
.|..+.|+||+|+|||||++.++..+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 37889999999999999999999887
No 360
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.35 E-value=0.14 Score=58.80 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=38.7
Q ss_pred HHHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 447 ERAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 447 ~~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
.+.++.|.....|..-..+..... .+..........+..+.|.|++|+||||+++.++..+..
T Consensus 333 t~ir~~Lr~G~~~p~~f~~peV~~----vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 333 EEFQRRMRAGLKIPEWYSFPEVLA----ELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp HHHHHHHTTTCCCCTTTSCHHHHH----HHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCccccccchhh----hhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 344566776655433333433332 333322111112678999999999999999999999873
No 361
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.25 E-value=0.12 Score=50.02 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~ 510 (842)
...++|.|++|+|||+|+..+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999988764
No 362
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.24 E-value=0.064 Score=51.48 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCChHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLA 506 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~ 506 (842)
|..+.|.||+|+|||||++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 67889999999999999995
No 363
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=92.20 E-value=0.0085 Score=50.11 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCcccCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhhhccCCCcCCcCCCcccHHHHHHHH
Q 003175 648 QLQEIISSRLKGIEAFEKQAIEFASRKVAAISG-DARRALEICRRAAEIADYRIKKQTSNKNSASVGKSLVGMADVEAAI 726 (842)
Q Consensus 648 e~~~Il~~~l~~~~~~~~~~l~~ia~~~~~~~G-d~R~al~ll~~A~~~A~~~~~~~~~~~~~~~~~~~~It~~dv~~A~ 726 (842)
++.+||+.+++..+.-++..++.+++.+.+++| |+. .+|+.|+..|..+ +...|+.+||..|+
T Consensus 2 ~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~---~l~~eAa~~ai~~-------------~~~~i~~~df~~Al 65 (82)
T 2dzn_B 2 ERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIA---AIMQEAGLRAVRK-------------NRYVILQSDLEEAY 65 (82)
T ss_dssp ------------CEECTTCCSTTTTTSSCCCCHHHHH---HHHHHHHHHHHHT-------------TCSEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHh-------------ccCCcCHHHHHHHH
Confidence 567888888876543334346667777777777 554 5899999998866 24679999999999
Q ss_pred HHHh
Q 003175 727 QEMF 730 (842)
Q Consensus 727 ~~~~ 730 (842)
.++.
T Consensus 66 ~~v~ 69 (82)
T 2dzn_B 66 ATQV 69 (82)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 8774
No 364
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=92.17 E-value=0.15 Score=55.51 Aligned_cols=28 Identities=21% Similarity=0.527 Sum_probs=19.2
Q ss_pred CCcEEEEEecCcccccCC-hHHHHHhhcC
Q 003175 576 DRPCILLIDELDLLVTRN-QSVLYNILDW 603 (842)
Q Consensus 576 ~~~~IlilDEid~L~~~~-~~~L~~ll~~ 603 (842)
....+|||||+|.+.... ...+..++..
T Consensus 161 ~~~~~vIiDEah~~~~~~~~~~~~~~~~~ 189 (394)
T 1fuu_A 161 DKIKMFILDEADEMLSSGFKEQIYQIFTL 189 (394)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHH
T ss_pred hhCcEEEEEChHHhhCCCcHHHHHHHHHh
Confidence 355799999999986543 4455555543
No 365
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.16 E-value=0.082 Score=52.37 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+.|.|++|+||||+++.++..+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56788999999999999999988775
No 366
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.14 E-value=0.26 Score=50.34 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~ 510 (842)
.-.|+|.|.+|+|||+|+..+...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 356899999999999999988753
No 367
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.12 E-value=0.1 Score=62.68 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 465 RNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 465 Re~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
.+.|.+.+...+. ...++|.||||||||+++..++..+..
T Consensus 358 n~~Q~~Av~~~l~---------~~~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 358 NHSQVYAVKTVLQ---------RPLSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp CHHHHHHHHHHHT---------SSEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcc---------CCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3555555554442 356789999999999999988887763
No 368
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.10 E-value=0.048 Score=54.13 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
.|.|.|++|+||||+++.+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999998863
No 369
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.06 E-value=0.099 Score=51.45 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.+.|.|++|+|||++++.++..++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 688999999999999999998876
No 370
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.02 E-value=0.1 Score=55.74 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
..++|.||+|+|||++++.++..++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4688999999999999999999875
No 371
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.02 E-value=0.095 Score=57.24 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=22.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
..++|.||+|+|||+|+..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4678999999999999999999876
No 372
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.01 E-value=0.11 Score=49.80 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=23.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
..+.|.|++|+|||+++..++..+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 568899999999999999999998743
No 373
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.01 E-value=0.12 Score=57.15 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+..++|+||+|+|||||+++++..+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 678899999999999999999998753
No 374
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.00 E-value=0.074 Score=54.56 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
...|.|.|++|+||||+++.+++.++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 456889999999999999999998763
No 375
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.96 E-value=0.063 Score=54.20 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=16.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHH-HHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVM-RSL 511 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~-~~l 511 (842)
|..+.|.||+|+||||+++.++ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 6788999999999999999998 664
No 376
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.95 E-value=0.079 Score=52.41 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l 511 (842)
+..+.|.|++|+||||+++.++..+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5678899999999999999888765
No 377
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=91.74 E-value=0.47 Score=56.48 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=25.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHH-HHHHHHhhcCCCCCceEEEEecc
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVM-RSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~-~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
+.+++|.||+|+|||+.+-..+ +.+... ....+++...
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il~i~P~ 84 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAIYVTPL 84 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEEEECSC
T ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEEEEeCc
Confidence 5789999999999999985443 443321 1456776543
No 378
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=91.72 E-value=0.072 Score=59.96 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCChHHHH-HHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCC
Q 003175 487 GRCLYIHGVPGTGKTMS-VLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGH 550 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l-~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~ 550 (842)
++.+++.+|+|+|||+. +..++..+... + ...+++... ..+...+.+.+.|.
T Consensus 21 ~~~vlv~a~TGsGKT~~~~l~il~~~~~~---~----~~~lvl~Pt-----r~La~Q~~~~l~g~ 73 (459)
T 2z83_A 21 RQMTVLDLHPGSGKTRKILPQIIKDAIQQ---R----LRTAVLAPT-----RVVAAEMAEALRGL 73 (459)
T ss_dssp TCEEEECCCTTSCTTTTHHHHHHHHHHHT---T----CCEEEEECS-----HHHHHHHHHHTTTS
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhC---C----CcEEEECch-----HHHHHHHHHHhcCc
Confidence 57899999999999987 45555555421 1 345665422 23444555555543
No 379
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.71 E-value=0.07 Score=52.34 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..++|.||+|+|||+|+..+++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 67899999999999999998887654
No 380
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.70 E-value=0.11 Score=54.22 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=24.1
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.+..++|+|++|+|||+|+..++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 478899999999999999999998664
No 381
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.70 E-value=0.32 Score=52.51 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=24.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+..+.|.|+.|+|||||++.++..+...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 6688899999999999999999988743
No 382
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.58 E-value=0.12 Score=50.59 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
..+.|+|++|+||||+++.+++.++
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4677999999999999999988764
No 383
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.58 E-value=0.16 Score=57.44 Aligned_cols=62 Identities=5% Similarity=-0.062 Sum_probs=40.0
Q ss_pred HHHHhccccCCCCCCCCcHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 448 RAKATLLLATLPKFLPCRNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 448 ~~~~~L~~~~~p~~L~gRe~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
..++.|.....|..-..|.+..+.+.+...... ..+..|+|.|.+|+||||+++++++.|..
T Consensus 360 ~IR~~Lr~G~~~P~~f~rpeV~~vLr~~~~~~~----~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 360 ELRRRLRVGGEIPEWFSYPEVVKILRESNPPRP----KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp HHHHHHHHTCCCCTTTSCHHHHHHHHHHSCCGG----GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCccccChhhHHHHHHhccccc----ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 345556666555444445444444444332111 12578999999999999999999999973
No 384
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.49 E-value=0.11 Score=52.45 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+.|.|++|+||||+++.+++.+.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 67788999999999999999999886
No 385
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.47 E-value=0.5 Score=53.46 Aligned_cols=68 Identities=10% Similarity=0.011 Sum_probs=41.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCc-------ccCCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003175 460 KFLPCRNKEMEDITAFIKGATCDDQ-------CLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLK 532 (842)
Q Consensus 460 ~~L~gRe~e~~~l~~~l~~~i~~~~-------~~~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~ 532 (842)
..+-..+...+.+.+.|...+.... ..+..|.|+|++|+||||++..++..+.... ..+..|++..
T Consensus 67 ~~~~~~~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G-------~kVllVd~D~ 139 (504)
T 2j37_W 67 SGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKG-------WKTCLICADT 139 (504)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEEEECC
T ss_pred ccCChHHHHHHHHHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCC-------CeEEEEeccc
Confidence 3333334444555555555543310 1245788999999999999999999887431 3355556544
Q ss_pred CC
Q 003175 533 LA 534 (842)
Q Consensus 533 ~~ 534 (842)
+.
T Consensus 140 ~r 141 (504)
T 2j37_W 140 FR 141 (504)
T ss_dssp SS
T ss_pred cc
Confidence 33
No 386
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.47 E-value=0.13 Score=49.60 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
...+.|.|++|+|||++++.++..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 356889999999999999999998764
No 387
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=91.43 E-value=0.25 Score=55.68 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=16.1
Q ss_pred CCeEEEEcCCCChHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSV 504 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~ 504 (842)
+..+++.||+|+|||...
T Consensus 131 ~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCEEEEECCSSSSHHHHH
T ss_pred CCcEEEEcCCCCchhHHH
Confidence 588999999999999874
No 388
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.39 E-value=0.36 Score=51.01 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+..++|+|++|+||||++..++..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 567899999999999999999998874
No 389
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.36 E-value=0.12 Score=56.52 Aligned_cols=28 Identities=14% Similarity=0.393 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+..++|+||+|+|||||++.++..+...
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 6789999999999999999999988643
No 390
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=91.30 E-value=0.19 Score=62.79 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l 511 (842)
+..+++.||+|+|||..+...+...
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~ 223 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQS 223 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHH
Confidence 5779999999999998876555444
No 391
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.30 E-value=0.26 Score=52.25 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+..+.|.|++|+|||||++.++..+..
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccc
Confidence 678889999999999999999988764
No 392
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.29 E-value=0.27 Score=52.20 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+.|.||+|+||||+++.+...+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34678999999999999999887765
No 393
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=91.27 E-value=0.26 Score=58.67 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=18.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVM 508 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~ 508 (842)
+.++++.||+|+|||+.+...+
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~i 61 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAM 61 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHHHH
Confidence 4779999999999999885433
No 394
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.15 E-value=0.33 Score=53.14 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCChHHHHHH-HHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVL-AVMRSL 511 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~-~v~~~l 511 (842)
+..+++.+|+|+|||..+- .++..+
T Consensus 64 ~~~~lv~apTGsGKT~~~~~~~~~~~ 89 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFVLAMLSQV 89 (412)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCchHHHHHHHHHHHHh
Confidence 4789999999999998753 334333
No 395
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.11 E-value=1.4 Score=50.50 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=16.3
Q ss_pred CCeEEEEcCCCChHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVL 505 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~ 505 (842)
++.+++.+|+|+|||....
T Consensus 111 ~~~~lv~apTGsGKTl~~~ 129 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFAFL 129 (563)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCccHHHH
Confidence 5789999999999997643
No 396
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.10 E-value=0.11 Score=51.22 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMR 509 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~ 509 (842)
.+.|.|++|+||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 397
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.04 E-value=0.11 Score=54.75 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l 511 (842)
..++|.|+||+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999988753
No 398
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.01 E-value=0.17 Score=51.29 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+.|.|++|+|||++++.++..++
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 66899999999999999999988775
No 399
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.01 E-value=1.2 Score=55.87 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHH
Q 003175 465 RNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVM 508 (842)
Q Consensus 465 Re~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~ 508 (842)
+..|.+.|...+.....+. +..++++|+.|+|||.++-..+
T Consensus 605 t~~Q~~ai~~il~~~~~g~---p~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 605 TPDQAQAINAVLSDMCQPL---AMDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp CHHHHHHHHHHHHHHHSSS---CCEEEEECCCCTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCC---cCcEEEECCCCCCHHHHHHHHH
Confidence 7777777777776543322 4589999999999998765444
No 400
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=90.97 E-value=0.075 Score=46.50 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=33.1
Q ss_pred ccceeecccccccccCccCCCccccccCCCCCCCCCCCCccc
Q 003175 190 ECRICFRAGRSVMLECDDCLGGFHLKCLKPPLKEVPEGEWVC 231 (842)
Q Consensus 190 ~C~~C~~~~~~~~l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C 231 (842)
.|.+|+... -+.|..|+.+||..|+++.|...+.+.|+|
T Consensus 60 ~C~~C~k~~---~~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 60 QCDECSSAA---VSFCEFCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp BCTTTCSBC---CEECSSSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCCcCCCCC---CcCcCCCCcchhhhccCCcceecCCCCcee
Confidence 355666554 378999999999999999999999999998
No 401
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=90.97 E-value=0.14 Score=61.60 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=21.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
..++|.||||||||+++..++..+..
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l~~ 401 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHLSK 401 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999998888777654
No 402
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.94 E-value=0.44 Score=46.14 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=19.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l 511 (842)
-.++|.|.+|+|||+|++.+...-
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999987543
No 403
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.87 E-value=0.97 Score=47.38 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+..+.|+|++|+||||++..++..+...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5678899999999999999999988743
No 404
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=90.84 E-value=0.19 Score=57.31 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCChHHHHHH-HHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVL-AVMRSL 511 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~-~v~~~l 511 (842)
+..++|.+|+|+|||.++- .++..+
T Consensus 158 ~~~~ll~apTGsGKT~~~~~~il~~l 183 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFALTMLSRV 183 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHHHHHHHS
T ss_pred CCCEEEECCCCccHHHHHHHHHHHHH
Confidence 4789999999999998744 344444
No 405
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.80 E-value=0.16 Score=53.71 Aligned_cols=27 Identities=33% Similarity=0.594 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+..+.|.||+|+|||||++.++..+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 678999999999999999999998874
No 406
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.74 E-value=0.13 Score=49.12 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~ 510 (842)
+.+++|.|++|+|||+++..++..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 688999999999999999988774
No 407
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.65 E-value=0.14 Score=58.34 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+.+++|.||+|+|||||+++++..+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46699999999999999999988774
No 408
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.48 E-value=0.18 Score=50.25 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+.|+|++|+|||++++.++..++
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35689999999999999999988775
No 409
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.42 E-value=0.16 Score=51.69 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+-|.||.|+||||+++.++..++
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56788999999999999999988775
No 410
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.40 E-value=0.21 Score=49.61 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
...+.|.|.+|+|||+|+..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 46788999999999999999998764
No 411
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.39 E-value=0.16 Score=50.48 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMR 509 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~ 509 (842)
+..|.|.|++|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999998876
No 412
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.36 E-value=0.14 Score=52.07 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 67889999999999999998876554
No 413
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.35 E-value=0.32 Score=51.45 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+.|.|++|+|||||++.++..+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56788999999999999999988765
No 414
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=90.33 E-value=2 Score=49.59 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHH
Q 003175 465 RNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLA 506 (842)
Q Consensus 465 Re~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~ 506 (842)
+.-|.+.|..++ .+ .+..+++.+|+|+|||.....
T Consensus 45 ~~~Q~~~i~~il----~~---~~~dvlv~apTGsGKTl~~~l 79 (579)
T 3sqw_A 45 TPVQQKTIKPIL----SS---EDHDVIARAKTGTGKTFAFLI 79 (579)
T ss_dssp CHHHHHHHHHHH----CS---SSEEEEEECCTTSCHHHHHHH
T ss_pred CHHHHHHHHHHH----cc---CCCeEEEEcCCCcHHHHHHHH
Confidence 455555554444 21 157899999999999986443
No 415
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=90.32 E-value=0.022 Score=61.11 Aligned_cols=52 Identities=25% Similarity=0.673 Sum_probs=40.3
Q ss_pred cccccccceeecccccccccCc--cCCCccccccCCCCCC-----C-CCCCCcccccccccc
Q 003175 185 DPEVEECRICFRAGRSVMLECD--DCLGGFHLKCLKPPLK-----E-VPEGEWVCEFCEARK 238 (842)
Q Consensus 185 ~~~~~~C~~C~~~~~~~~l~Cd--~C~~~~H~~C~~p~l~-----~-~p~~~W~C~~C~~~~ 238 (842)
+..+.+|.+|+.++. +++|| .|.+.|=..|+.--+. . .....|.|-.|..+.
T Consensus 90 DG~~~yCr~C~~Gg~--l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 90 DGYQSYCSICCSGET--LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SSSBCSCTTTCCCSS--CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CCCcccceEcCCCCe--EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 445679999999887 99999 9999999999873321 1 122479999999765
No 416
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.32 E-value=0.14 Score=50.08 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~ 510 (842)
+..|.|+|++|+||||+++.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457889999999999999988875
No 417
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.25 E-value=0.28 Score=48.93 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
...++|.|.+|+|||+|+..++..+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 46688999999999999999988764
No 418
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=90.21 E-value=0.091 Score=61.38 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCChHHHH-HHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMS-VLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l-~~~v~~~l~ 512 (842)
++.+++.+++|+|||+. +-.++..+.
T Consensus 186 g~dvlv~a~TGSGKT~~~~lpil~~l~ 212 (618)
T 2whx_A 186 KRLTIMDLHPGAGKTKRILPSIVREAL 212 (618)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999986 344555554
No 419
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.13 E-value=0.13 Score=51.69 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 67788999999999999998876553
No 420
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=90.05 E-value=0.13 Score=57.83 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=18.5
Q ss_pred CCeEEEEcCCCChHHHH-HHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMS-VLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l-~~~v~~~l~ 512 (842)
...+++.||+|+|||+. +-.++..+.
T Consensus 19 ~~~~lv~a~TGsGKT~~~~~~~l~~~~ 45 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTKRILPSIVREAL 45 (451)
T ss_dssp TCEEEECCCTTSSCCTTHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHhhHHHHHHHHHHH
Confidence 35669999999999983 444544443
No 421
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.00 E-value=0.51 Score=50.13 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=24.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+..+.|+|++|+||||++..++..+...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6689999999999999999999988753
No 422
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.98 E-value=0.17 Score=56.68 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=24.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+..+.|.|+.|+|||||++.++..+...
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 6788999999999999999999888643
No 423
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.97 E-value=0.15 Score=51.75 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 67889999999999999999887654
No 424
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=89.93 E-value=1.7 Score=51.25 Aligned_cols=39 Identities=28% Similarity=0.328 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 465 RNKEMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 465 Re~e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|.-|.+.+..++. +..+++.+|.|+|||..+..++....
T Consensus 15 r~~Q~~~i~~~l~---------g~~~iv~~~TGsGKTl~~~~~i~~~l 53 (696)
T 2ykg_A 15 RNYQLELALPAMK---------GKNTIICAPTGCGKTFVSLLICEHHL 53 (696)
T ss_dssp CHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHc---------CCCEEEEcCCCchHHHHHHHHHHHHH
Confidence 4555555544432 46789999999999998876665543
No 425
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.81 E-value=0.15 Score=48.99 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=23.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
..+.|.|++|+|||||++.++..+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45789999999999999999998874
No 426
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=89.73 E-value=1.8 Score=49.13 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+++.+|+|+|||..+-..+...-
T Consensus 19 ~~~~l~~~~tGsGKT~~~~~~~~~~~ 44 (555)
T 3tbk_A 19 GKNTIICAPTGCGKTFVSLLICEHHL 44 (555)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHHH
Confidence 46689999999999988766655443
No 427
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=89.73 E-value=0.51 Score=57.27 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~ 510 (842)
+..+.|+||.|+||||+++.++.-
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHH
Confidence 678999999999999999988653
No 428
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=89.71 E-value=1.3 Score=48.33 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=19.8
Q ss_pred CcEEEEEecCcccccCC-hHHHHHhhcC
Q 003175 577 RPCILLIDELDLLVTRN-QSVLYNILDW 603 (842)
Q Consensus 577 ~~~IlilDEid~L~~~~-~~~L~~ll~~ 603 (842)
...+|||||+|.+.... ...+..++..
T Consensus 175 ~~~~iViDEah~~~~~~~~~~~~~i~~~ 202 (417)
T 2i4i_A 175 FCKYLVLDEADRMLDMGFEPQIRRIVEQ 202 (417)
T ss_dssp TCCEEEESSHHHHHHTTCHHHHHHHHTS
T ss_pred hCcEEEEEChhHhhccCcHHHHHHHHHh
Confidence 45789999999987654 4566666653
No 429
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.67 E-value=0.32 Score=59.26 Aligned_cols=23 Identities=17% Similarity=0.015 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMR 509 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~ 509 (842)
+..+.|+||.|+||||+++.++.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56789999999999999998843
No 430
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.67 E-value=0.31 Score=53.73 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHH
Q 003175 468 EMEDITAFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 468 e~~~l~~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l 511 (842)
....+.++|...... +..+.|.|++|+|||||++.++..+
T Consensus 54 ~~~~i~~~L~~~~~~----~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 54 TNSAISDALKEIDSS----VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp HHHHHHHHHHHHHHC----CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred cchhhhhhhhhcccC----CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 345566666666543 4578899999999999999998754
No 431
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.65 E-value=0.22 Score=49.62 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
|..|.|.|++|+||||+++.+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 567889999999999999999999874
No 432
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.63 E-value=0.15 Score=50.73 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~ 510 (842)
|..+.|.||.|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 677889999999999999999887
No 433
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=89.47 E-value=1.2 Score=46.78 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~ 510 (842)
.-++|.|.+|+|||+|++.+...
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999987764
No 434
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.42 E-value=0.17 Score=52.17 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 67888999999999999998877654
No 435
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.39 E-value=0.17 Score=50.57 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 67788999999999999999887653
No 436
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.35 E-value=0.21 Score=48.05 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=22.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+|+|+.|+|||++++++.-.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4778999999999999999887765
No 437
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.30 E-value=0.22 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|.|+|++|+||||+++.++ .++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg 99 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLG 99 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHT
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCC
Confidence 3568899999999999999988 443
No 438
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.25 E-value=0.21 Score=51.14 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~ 510 (842)
|..+.|.||.|+|||||++.++..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 678889999999999999998875
No 439
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.25 E-value=0.26 Score=53.45 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=27.5
Q ss_pred HHHHHhhcCCcccCCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 474 AFIKGATCDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 474 ~~l~~~i~~~~~~~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
..+.-.+.. +..+.|.||+|+|||||++.++..+.
T Consensus 166 ~~l~~~i~~----G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQL----ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHT----TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhc----CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445444543 57899999999999999999988765
No 440
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=89.24 E-value=0.49 Score=51.12 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=25.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
|.-++|.|++|+|||+|+..+++.+...
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 6778999999999999999999988753
No 441
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=89.24 E-value=1.9 Score=49.01 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..+++.+|+|+|||..+-..+...-
T Consensus 22 ~~~~l~~~~tGsGKT~~~~~~~~~~~ 47 (556)
T 4a2p_A 22 GKNALICAPTGSGKTFVSILICEHHF 47 (556)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCChHHHHHHHHHHHHH
Confidence 35689999999999988766654443
No 442
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.15 E-value=0.21 Score=51.79 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.+.|.||+|+|||||++.++..+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999998764
No 443
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.13 E-value=0.26 Score=49.95 Aligned_cols=28 Identities=25% Similarity=0.602 Sum_probs=25.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
+..|.|.|++|+||||+++.+++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 6778899999999999999999998753
No 444
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.11 E-value=0.19 Score=51.78 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 67888999999999999999887654
No 445
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.10 E-value=0.19 Score=50.76 Aligned_cols=26 Identities=35% Similarity=0.607 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 67889999999999999999887664
No 446
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.10 E-value=0.23 Score=57.63 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEec
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNG 530 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~ 530 (842)
+..|+|+|.+|+||||+++.+++.|.... +.++.+++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G-------~~~v~lDg 88 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHG-------IPCYTLDG 88 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEESH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcC-------CeEEEech
Confidence 56799999999999999999999985321 45777754
No 447
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=89.08 E-value=0.32 Score=56.13 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=24.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+..|+|.|.+|+||||+++.+++.|..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 567899999999999999999999884
No 448
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.06 E-value=0.22 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~ 510 (842)
|..+.|.||.|+|||||++.++..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 678899999999999999998875
No 449
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.00 E-value=0.19 Score=51.33 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 67889999999999999999877654
No 450
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.98 E-value=0.2 Score=51.79 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 67888999999999999999877653
No 451
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.98 E-value=0.2 Score=51.69 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l 511 (842)
|..+.|.||.|+|||||++.++..+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 6789999999999999999988765
No 452
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.95 E-value=0.29 Score=52.38 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=28.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecc
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGL 531 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~ 531 (842)
+..+.|.|++|+|||||++.++..+... -..+.+++.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~--------~g~i~i~~~ 207 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKE--------ERIISIEDT 207 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTT--------SCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC--------CcEEEECCe
Confidence 5789999999999999999998876532 225666654
No 453
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.92 E-value=0.18 Score=51.34 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 67889999999999999999887654
No 454
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.89 E-value=0.22 Score=48.67 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~ 510 (842)
.+.|.|++|+|||+|++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 455
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.88 E-value=0.22 Score=52.32 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=27.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCC
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLA 534 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~ 534 (842)
+..|.|+|++|+||||+++.+++.++... +.+..|++..+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~-------~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREG-------VKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHT-------CCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcC-------CCeeEeecchhh
Confidence 35688999999999999999999887431 335556655544
No 456
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.87 E-value=0.2 Score=50.96 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 67888999999999999999887653
No 457
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.87 E-value=0.82 Score=51.20 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCChHHHH-HHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMS-VLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l-~~~v~~~l~~ 513 (842)
|.-++|.|++|+|||+| +..++++...
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~ 189 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRF 189 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhh
Confidence 66789999999999999 6678877753
No 458
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.86 E-value=0.21 Score=48.58 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~l 511 (842)
.+.|.|++|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999887643
No 459
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.81 E-value=0.23 Score=46.16 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~ 510 (842)
.++|.|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998764
No 460
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.77 E-value=0.2 Score=51.22 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 67888999999999999998877653
No 461
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.77 E-value=0.21 Score=51.87 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 67889999999999999999887654
No 462
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.69 E-value=0.21 Score=51.99 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 67889999999999999999887653
No 463
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=88.66 E-value=0.89 Score=49.19 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVM 508 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~ 508 (842)
+..+++.+|+|+|||..+-..+
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHH
Confidence 3568999999999998764443
No 464
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.62 E-value=0.22 Score=51.26 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 67889999999999999999887653
No 465
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.58 E-value=0.31 Score=48.90 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=24.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+..|.|.|++|+||||+++.+++.+..
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 677888999999999999999999986
No 466
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.56 E-value=0.23 Score=50.05 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
|..|.|.|++|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 5678899999999999999999999754
No 467
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.50 E-value=0.24 Score=53.46 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||+|+|||||++.++..+.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 67788999999999999999987654
No 468
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.44 E-value=0.25 Score=46.19 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=20.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~ 510 (842)
-.++|.|++|+|||+|++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999988764
No 469
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=88.42 E-value=0.16 Score=56.83 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCChHHHHH-HHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSV-LAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~-~~v~~~l~ 512 (842)
++.+++.||+|+|||..+ -.++..+.
T Consensus 8 g~~vlv~a~TGSGKT~~~l~~~l~~~~ 34 (440)
T 1yks_A 8 GMTTVLDFHPGAGKTRRFLPQILAECA 34 (440)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999974 44555443
No 470
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.36 E-value=0.23 Score=51.38 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 67888999999999999999887653
No 471
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=88.34 E-value=0.25 Score=48.68 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=23.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
..|.|.|++|+|||++++.+++.|+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5688999999999999999999987
No 472
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.34 E-value=0.22 Score=51.47 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 67888999999999999999887654
No 473
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.21 E-value=0.26 Score=53.10 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||+|+|||||++.++..+.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 67888999999999999999887654
No 474
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.18 E-value=0.23 Score=51.74 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 67888999999999999999887654
No 475
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.16 E-value=0.23 Score=50.94 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 67888999999999999999887654
No 476
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.15 E-value=0.23 Score=50.31 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
+..|.|.|++|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45688999999999999999999874
No 477
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.10 E-value=1.7 Score=55.36 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=24.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 486 LGRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 486 ~~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
.|..+.|+|+.|+||||+++.+.+.+.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc
Confidence 378899999999999999999988765
No 478
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.03 E-value=0.36 Score=48.07 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=24.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSE 514 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~ 514 (842)
|.-|.|.|++|+||||+++.+++.|...
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5678899999999999999999999753
No 479
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.02 E-value=0.26 Score=46.43 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMR 509 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~ 509 (842)
..+.|.|++|+|||+|++.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999875
No 480
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.97 E-value=0.27 Score=49.95 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
..+.|.||.|+|||||++.++..+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678999999999999999887653
No 481
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.96 E-value=0.27 Score=45.72 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~ 510 (842)
.++|.|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999988754
No 482
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.96 E-value=0.28 Score=48.49 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSL 511 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l 511 (842)
...++|.|++|+|||+|+..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4679999999999999999887643
No 483
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.95 E-value=0.28 Score=53.03 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||+|+|||||++.++..+.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 67788999999999999999887654
No 484
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.94 E-value=2.1 Score=48.82 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=15.7
Q ss_pred CCeEEEEcCCCChHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVL 505 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~ 505 (842)
++.+++.+|+|+|||....
T Consensus 40 g~d~lv~apTGsGKTl~~~ 58 (523)
T 1oyw_A 40 GRDCLVVMPTGGGKSLCYQ 58 (523)
T ss_dssp TCCEEEECSCHHHHHHHHH
T ss_pred CCCEEEECCCCcHHHHHHH
Confidence 3568999999999998554
No 485
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.94 E-value=0.29 Score=52.93 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||+|+|||||++.++..+.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 67888999999999999999987654
No 486
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=87.93 E-value=0.25 Score=53.11 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCC
Confidence 67888999999999999999887653
No 487
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.90 E-value=0.28 Score=45.85 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~ 510 (842)
-.++|.|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999988754
No 488
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=87.89 E-value=1.1 Score=52.22 Aligned_cols=98 Identities=12% Similarity=0.139 Sum_probs=60.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEEecccCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhc
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHSLNERFLD 567 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~in~~~~~s~~~~~~~i~~~l~g~~~~~~~~~~~L~~~f~~ 567 (842)
+..+|+|++|.|||+++-.++..+.. .+.|.+....+...++......+ ....+... + ..
T Consensus 193 ~~~vlta~RGRGKSa~lG~~~a~~~~-----------~~~vtAP~~~a~~~l~~~~~~~i--~~~~Pd~~---~-~~--- 252 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQLISRIAG-----------RAIVTAPAKASTDVLAQFAGEKF--RFIAPDAL---L-AS--- 252 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSSS-----------CEEEECSSCCSCHHHHHHHGGGC--CBCCHHHH---H-HS---
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHh-----------CcEEECCCHHHHHHHHHHhhCCe--EEeCchhh---h-hC---
Confidence 44689999999999999999888742 24667777676655554432211 11122221 1 11
Q ss_pred ccCCCCCCCCcEEEEEecCcccccCChHHHHHhhcCCCCCCCcEEEEEEeCC
Q 003175 568 GKKIGKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIVIGIANT 619 (842)
Q Consensus 568 ~~~~~~~~~~~~IlilDEid~L~~~~~~~L~~ll~~~~~~~~~vivI~~tn~ 619 (842)
. ...-+|||||+=.+. ..+|..++. ...+|++..|.+-
T Consensus 253 ~-------~~~dlliVDEAAaIp---~pll~~ll~----~~~~v~~~tTv~G 290 (671)
T 2zpa_A 253 D-------EQADWLVVDEAAAIP---APLLHQLVS----RFPRTLLTTTVQG 290 (671)
T ss_dssp C-------CCCSEEEEETGGGSC---HHHHHHHHT----TSSEEEEEEEBSS
T ss_pred c-------ccCCEEEEEchhcCC---HHHHHHHHh----hCCeEEEEecCCc
Confidence 1 134699999998874 577888886 2335555544443
No 489
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.86 E-value=0.27 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=19.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~ 510 (842)
-.++|.|++|+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35889999999999999988754
No 490
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=87.82 E-value=0.034 Score=43.29 Aligned_cols=49 Identities=24% Similarity=0.454 Sum_probs=33.0
Q ss_pred cccccceeecccc-cccccC--ccCCCccccccCCCCCCCCCCCCccccccccc
Q 003175 187 EVEECRICFRAGR-SVMLEC--DDCLGGFHLKCLKPPLKEVPEGEWVCEFCEAR 237 (842)
Q Consensus 187 ~~~~C~~C~~~~~-~~~l~C--d~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 237 (842)
+...|.||...++ ..+.-| .+.-+++|..|+...+.. .+.+.|+.|...
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~~~ 56 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI--SRNTACQICGVV 56 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCB
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh--CCCCccCCCCCe
Confidence 4458999976554 344444 233459999999987642 246899999764
No 491
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.81 E-value=0.31 Score=55.57 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+..|+|+|.||+||||+++.+++.++.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 457889999999999999999998863
No 492
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.74 E-value=0.23 Score=47.78 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 003175 489 CLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 489 ~ili~GppGtGKT~l~~~v~~~ 510 (842)
-+.|.|++|+|||+|++.++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998763
No 493
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.72 E-value=0.29 Score=46.32 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=20.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~ 510 (842)
-.++|.|++|+|||+|++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999988753
No 494
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=87.71 E-value=0.47 Score=54.38 Aligned_cols=27 Identities=26% Similarity=0.610 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
+..|+|+|++|+||||+++.+++.+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 567899999999999999999998874
No 495
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.71 E-value=0.3 Score=45.54 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~ 510 (842)
-.++|.|.+|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999988753
No 496
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=87.70 E-value=0.69 Score=49.94 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRS 513 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~ 513 (842)
...+.|+|+||+|||+++..++..+..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 467889999999999999999988863
No 497
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=87.67 E-value=0.3 Score=53.04 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||.|+|||||++.++..+.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 67888999999999999999887654
No 498
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.66 E-value=0.3 Score=53.09 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLR 512 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~ 512 (842)
|..+.|.||+|+|||||++.++..+.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 67888999999999999999987664
No 499
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.61 E-value=0.3 Score=45.74 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 003175 488 RCLYIHGVPGTGKTMSVLAVMRS 510 (842)
Q Consensus 488 ~~ili~GppGtGKT~l~~~v~~~ 510 (842)
-.++|.|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999988754
No 500
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=87.57 E-value=0.55 Score=52.45 Aligned_cols=93 Identities=19% Similarity=0.274 Sum_probs=52.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHHhhcCCCCCceEEEE-ecccCCChHHHHHHHHHHH-hC------CCC------
Q 003175 487 GRCLYIHGVPGTGKTMSVLAVMRSLRSEVESGSIRPYCFVEV-NGLKLASPENIYRVIYEAL-SG------HRV------ 552 (842)
Q Consensus 487 ~~~ili~GppGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~i-n~~~~~s~~~~~~~i~~~l-~g------~~~------ 552 (842)
|+-+.|.|++|+|||+|+..+++...... ..+. |++ -+..-..-.+++..+.+.- .. .+.
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~-----~~v~-V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t 238 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAH-----GGVS-VFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQ 238 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTC-----SSCE-EEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEEC
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhC-----CCEE-EEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeC
Confidence 66789999999999999999988754221 1133 443 2333223334444443320 00 010
Q ss_pred ---------CHHHHHHHHHHHhhcccCCCCCCCCcEEEEEecCccccc
Q 003175 553 ---------SWKKALHSLNERFLDGKKIGKEDDRPCILLIDELDLLVT 591 (842)
Q Consensus 553 ---------~~~~~~~~L~~~f~~~~~~~~~~~~~~IlilDEid~L~~ 591 (842)
-.....-.+.++|.+. .++.++|++|.+-.++.
T Consensus 239 ~d~p~~~R~~~~~~altiAEyfrd~------~G~dVLl~~DsitR~A~ 280 (498)
T 1fx0_B 239 MNEPPGARMRVGLTALTMAEYFRDV------NEQDVLLFIDNIFRFVQ 280 (498)
T ss_dssp TTSCHHHHTTHHHHHHHTHHHHTTT------SCCEEEEEEECSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh------cCCcEEEEeccHHHHHH
Confidence 1112223455777641 24779999999987764
Done!