Query 003176
Match_columns 842
No_of_seqs 409 out of 1804
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 16:02:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu1_A Mitogen-activated prote 99.0 9.6E-10 3.3E-14 93.9 9.1 69 33-107 16-87 (103)
2 1vd2_A Protein kinase C, IOTA 98.1 2.1E-05 7.3E-10 67.6 10.5 72 33-106 14-88 (89)
3 2jrh_A Mitogen-activated prote 97.7 0.00022 7.7E-09 59.5 9.7 72 29-107 9-83 (94)
4 1oey_A P67-PHOX, neutrophil cy 97.6 0.00014 4.8E-09 61.5 7.9 72 28-104 9-80 (83)
5 2c60_A Human mitogen-activated 97.6 0.00037 1.3E-08 59.6 9.7 72 28-106 35-109 (111)
6 2npt_B Mitogen-activated prote 97.6 0.00034 1.2E-08 59.2 9.4 72 28-106 24-98 (100)
7 2kkc_A Sequestosome-1; P62, PB 97.4 0.00054 1.8E-08 60.4 8.9 71 32-105 18-100 (102)
8 1wmh_B Partitioning defective- 97.3 0.00076 2.6E-08 57.1 8.5 71 31-105 12-84 (86)
9 1q1o_A Cell division control p 97.3 0.00043 1.5E-08 60.2 6.3 58 34-93 22-84 (98)
10 2ktr_A Sequestosome-1; autopha 97.2 0.0015 5.3E-08 58.7 9.3 71 32-105 33-115 (117)
11 1pqs_A Cell division control p 96.8 0.0021 7.2E-08 53.6 6.0 56 35-92 2-62 (77)
12 1ip9_A BEM1 protein; ubiquitin 95.3 0.076 2.6E-06 44.5 8.4 62 29-96 17-79 (85)
13 2bkf_A Zinc-finger protein NBR 94.1 0.17 5.9E-06 42.7 7.7 56 33-92 14-71 (87)
14 1wj6_A KIAA0049 protein, RSGI 92.2 0.27 9.3E-06 42.5 6.3 73 29-106 19-94 (101)
15 1nc8_A Nucleocapsid protein; H 91.7 0.069 2.4E-06 35.6 1.6 22 820-841 4-25 (29)
16 1oey_J P40-PHOX, neutrophil cy 89.5 1.3 4.3E-05 38.3 7.8 60 33-96 17-80 (107)
17 1a6b_B Momulv, zinc finger pro 88.6 0.2 6.9E-06 36.0 2.0 20 822-841 10-29 (40)
18 2ayd_A WRKY transcription fact 88.6 0.87 3E-05 37.6 6.0 38 311-348 35-72 (76)
19 1dsq_A Nucleic acid binding pr 88.0 0.23 7.8E-06 32.2 1.8 19 823-841 3-21 (26)
20 1wj2_A Probable WRKY transcrip 87.8 1.1 3.6E-05 37.2 6.1 38 311-348 38-75 (78)
21 3hot_A Transposable element ma 87.4 9.3 0.00032 40.6 15.5 56 477-535 186-252 (345)
22 1u6p_A GAG polyprotein; MLV, A 85.3 0.49 1.7E-05 36.7 2.7 20 822-841 23-42 (56)
23 2ec7_A GAG polyprotein (PR55GA 83.9 0.5 1.7E-05 35.6 2.1 20 822-841 27-46 (49)
24 3a9j_A Ubiquitin; protein comp 79.3 3.2 0.00011 33.5 5.7 41 29-69 5-45 (76)
25 2a51_A Nucleocapsid protein; s 78.1 0.8 2.7E-05 32.6 1.4 18 823-840 22-39 (39)
26 2bwf_A Ubiquitin-like protein 76.5 4.7 0.00016 32.6 6.0 38 33-70 12-49 (77)
27 2a51_A Nucleocapsid protein; s 76.1 1.2 3.9E-05 31.7 1.8 18 824-841 2-19 (39)
28 1ndd_A NEDD8, protein (ubiquit 75.8 4.1 0.00014 32.7 5.4 41 30-70 6-46 (76)
29 3phx_B Ubiquitin-like protein 74.9 4.7 0.00016 33.0 5.6 41 29-69 9-49 (79)
30 2al3_A TUG long isoform; TUG U 73.3 3.5 0.00012 35.1 4.3 66 30-106 15-80 (90)
31 2dzi_A Ubiquitin-like protein 73.3 5.8 0.0002 32.4 5.8 39 31-69 14-52 (81)
32 1wjn_A Tubulin-folding protein 73.1 4.3 0.00015 34.9 5.1 53 33-85 21-73 (97)
33 2bl6_A Nucleocapsid protein P1 72.7 1.5 5.1E-05 30.8 1.6 15 825-839 3-17 (37)
34 3q3f_A Ribonuclease/ubiquitin 72.5 7.9 0.00027 37.9 7.4 58 12-69 88-150 (189)
35 3mtn_B UBA80, ubcep1, ubiquiti 72.5 5.4 0.00018 32.9 5.5 40 30-69 9-48 (85)
36 1yx5_B Ubiquitin; proteasome, 71.5 6 0.00021 34.0 5.7 41 29-69 5-45 (98)
37 4dwf_A HLA-B-associated transc 71.5 5.8 0.0002 33.3 5.5 41 29-69 10-50 (90)
38 3n3k_B Ubiquitin; hydrolase, p 71.1 5.7 0.00019 32.8 5.3 42 29-70 8-49 (85)
39 1a1t_A Nucleocapsid protein; s 71.0 1.4 4.9E-05 33.8 1.3 21 821-841 32-52 (55)
40 1wh3_A 59 kDa 2'-5'-oligoadeny 70.8 7.1 0.00024 32.5 5.8 41 30-70 13-53 (87)
41 2bl6_A Nucleocapsid protein P1 70.2 1.7 5.9E-05 30.4 1.5 18 823-840 20-37 (37)
42 2kk8_A Uncharacterized protein 70.1 7.7 0.00026 32.4 5.9 42 29-70 15-56 (84)
43 1sif_A Ubiquitin; hydrophobic 70.0 6.6 0.00023 33.0 5.5 41 29-69 14-54 (88)
44 4eew_A Large proline-rich prot 68.7 7.5 0.00026 32.5 5.5 41 29-69 22-62 (88)
45 3k9o_B Ubiquitin, UBB+1; E2-25 68.6 7.7 0.00026 33.0 5.7 41 29-69 6-46 (96)
46 2rpr_A Flywch-type zinc finger 68.4 7.2 0.00025 32.9 5.3 45 298-349 26-73 (87)
47 2ysa_A Retinoblastoma-binding 68.4 2 7E-05 33.1 1.6 20 821-840 6-25 (55)
48 2uyz_B Small ubiquitin-related 67.8 7.8 0.00027 31.6 5.4 40 30-69 9-48 (79)
49 3v6c_B Ubiquitin; structural g 67.5 7.8 0.00027 32.7 5.5 42 29-70 22-63 (91)
50 4hcn_B Polyubiquitin, ubiquiti 67.1 8 0.00027 33.2 5.5 42 29-70 27-68 (98)
51 3dbh_I NEDD8; cell cycle, acti 67.0 6.7 0.00023 32.7 4.9 40 30-69 18-57 (88)
52 2kd0_A LRR repeats and ubiquit 66.4 11 0.00037 31.5 6.0 39 31-69 18-56 (85)
53 2ec7_A GAG polyprotein (PR55GA 66.2 2.1 7.3E-05 32.0 1.4 22 820-841 4-25 (49)
54 4fbj_B NEDD8; effector-HOST ta 65.7 9.2 0.00032 32.1 5.5 42 29-70 5-46 (88)
55 1wyw_B Ubiquitin-like protein 64.8 9.1 0.00031 32.9 5.4 40 30-69 27-66 (97)
56 1a1t_A Nucleocapsid protein; s 64.1 2.4 8.3E-05 32.5 1.3 22 820-841 10-31 (55)
57 2npt_A Dual specificity mitoge 63.6 10 0.00036 32.0 5.1 49 43-94 35-83 (106)
58 2ojr_A Ubiquitin; lanthide-bin 62.9 12 0.0004 33.0 5.9 39 31-69 42-80 (111)
59 2hj8_A Interferon-induced 17 k 62.2 8.9 0.00031 32.2 4.8 40 31-70 11-50 (88)
60 3plu_A Ubiquitin-like modifier 62.1 11 0.00038 32.3 5.2 43 29-71 26-68 (93)
61 2kjr_A CG11242; UBL, ubiquitin 62.0 17 0.00058 31.2 6.5 35 36-70 29-63 (95)
62 3kks_A Integrase, IN; beta-str 61.8 26 0.00088 31.7 8.4 65 465-539 3-67 (152)
63 2faz_A Ubiquitin-like containi 61.4 14 0.00048 29.8 5.7 38 32-69 10-49 (78)
64 2kzr_A Ubiquitin thioesterase 61.1 6.2 0.00021 33.1 3.5 43 29-72 5-48 (86)
65 1wxv_A BAG-family molecular ch 60.7 14 0.00047 31.2 5.8 38 33-70 15-57 (92)
66 2kan_A Uncharacterized protein 60.0 14 0.00049 31.5 5.7 39 31-70 22-60 (94)
67 1cl4_A Protein (GAG polyprotei 60.0 4 0.00014 31.9 1.9 21 821-841 29-49 (60)
68 3vdz_A Ubiquitin-40S ribosomal 59.7 14 0.00047 32.6 5.8 42 29-70 40-81 (111)
69 2kdi_A Ubiquitin, vacuolar pro 59.7 13 0.00046 32.9 5.7 42 29-70 14-55 (114)
70 2cqf_A RNA-binding protein LIN 58.9 4.2 0.00014 32.2 1.9 17 824-840 31-47 (63)
71 1ttn_A DC-UBP, dendritic cell- 58.9 10 0.00036 33.1 4.8 39 31-69 30-68 (106)
72 2li8_A Protein LIN-28 homolog 58.7 5.2 0.00018 32.9 2.5 19 822-840 46-64 (74)
73 1wy8_A NP95-like ring finger p 58.1 17 0.00059 30.2 5.9 39 32-70 15-55 (89)
74 2wyq_A HHR23A, UV excision rep 57.0 19 0.00063 29.6 5.8 42 29-70 10-54 (85)
75 3m62_B UV excision repair prot 56.5 9.5 0.00033 33.4 4.1 42 29-70 6-47 (106)
76 2ihx_A Nucleocapsid (NC) prote 56.1 4.4 0.00015 31.8 1.6 19 823-841 31-49 (61)
77 2ihx_A Nucleocapsid (NC) prote 55.9 3.8 0.00013 32.2 1.1 20 822-841 4-23 (61)
78 1wm3_A Ubiquitin-like protein 54.4 21 0.00072 28.7 5.5 38 32-69 9-46 (72)
79 1v5t_A 8430435I17RIK protein; 53.7 15 0.00052 30.9 4.8 39 29-68 12-51 (90)
80 2ezd_A High mobility group pro 52.1 8.8 0.0003 24.2 2.1 16 799-814 2-17 (26)
81 2daj_A KIAA0977 protein, COBL- 51.6 21 0.00072 29.9 4.9 39 29-67 15-53 (91)
82 2l7r_A Ubiquitin-like protein 50.8 24 0.00082 29.9 5.6 40 31-70 24-63 (93)
83 1wgg_A Ubiquitin carboxyl-term 50.4 16 0.00055 31.3 4.4 37 33-69 15-52 (96)
84 3a4r_A Nfatc2-interacting prot 50.1 28 0.00095 28.6 5.7 40 30-69 13-53 (79)
85 1wx7_A Ubiquilin 3; ubiquitin- 50.0 23 0.00079 30.7 5.5 38 32-70 25-62 (106)
86 2klc_A Ubiquilin-1; ubiquitin- 49.8 27 0.00094 30.0 5.9 36 34-69 34-69 (101)
87 2daf_A FLJ35834 protein; hypot 49.8 24 0.00083 31.5 5.5 38 33-70 25-62 (118)
88 3b08_A Polyubiquitin-C, ubiqui 49.8 43 0.0015 30.6 7.8 41 29-69 81-121 (152)
89 1we7_A SF3A1 protein; structur 49.8 21 0.00072 31.6 5.3 38 32-69 43-80 (115)
90 1v5o_A 1700011N24RIK protein; 49.4 18 0.00061 31.3 4.6 37 33-69 20-56 (102)
91 2cqf_A RNA-binding protein LIN 49.3 5.5 0.00019 31.5 1.1 20 821-840 6-25 (63)
92 1j8c_A Ubiquitin-like protein 48.4 30 0.001 31.2 6.1 37 34-70 41-77 (125)
93 2kj6_A Tubulin folding cofacto 48.3 22 0.00076 30.6 5.0 35 36-70 28-62 (97)
94 3ts2_A Protein LIN-28 homolog 47.4 7.8 0.00027 36.3 2.1 20 822-841 119-138 (148)
95 3m63_B Ubiquitin domain-contai 47.3 10 0.00035 32.9 2.7 37 33-69 36-72 (101)
96 4b6w_A Tubulin-specific chaper 46.8 20 0.0007 30.0 4.4 38 33-70 13-50 (86)
97 1v86_A DNA segment, CHR 7, way 46.8 11 0.00038 32.2 2.8 37 33-69 25-61 (95)
98 2pjh_A Protein NPL4, nuclear p 46.2 7.7 0.00026 32.2 1.6 42 30-72 10-51 (80)
99 1uel_A HHR23B, UV excision rep 46.2 32 0.0011 29.1 5.7 40 30-69 6-48 (95)
100 2li8_A Protein LIN-28 homolog 46.2 7.6 0.00026 31.8 1.5 20 821-840 23-42 (74)
101 1t0y_A Tubulin folding cofacto 46.1 37 0.0013 30.4 6.4 35 36-70 19-53 (122)
102 2io0_B Small ubiquitin-related 45.1 31 0.0011 29.3 5.4 69 32-109 13-81 (91)
103 1yqb_A Ubiquilin 3; structural 44.8 28 0.00095 30.0 5.1 40 30-70 28-67 (100)
104 1uh6_A Ubiquitin-like 5; beta- 44.7 27 0.00094 30.3 5.0 42 29-70 33-74 (100)
105 3u30_A Ubiquitin, linear DI-ub 44.7 30 0.001 32.8 5.9 42 29-70 25-66 (172)
106 3b1l_X E3 ubiquitin-protein li 50.0 4.8 0.00016 32.6 0.0 40 30-69 6-45 (76)
107 2eke_C Ubiquitin-like protein 43.5 33 0.0011 30.1 5.4 37 33-69 39-75 (106)
108 1wx8_A Riken cDNA 4931431F19; 43.4 24 0.0008 29.9 4.4 36 34-69 26-61 (96)
109 3b08_A Polyubiquitin-C, ubiqui 43.0 33 0.0011 31.4 5.7 41 30-70 6-46 (152)
110 3l3u_A POL polyprotein; DNA in 42.9 66 0.0023 29.5 8.0 66 464-539 9-74 (163)
111 3rt3_B Ubiquitin-like protein 42.4 44 0.0015 31.1 6.6 41 29-69 7-48 (159)
112 2d07_B Ubiquitin-like protein 41.3 37 0.0013 28.8 5.3 38 32-69 25-62 (93)
113 2io1_B Small ubiquitin-related 41.0 37 0.0013 28.9 5.2 38 32-69 15-52 (94)
114 1wju_A NEDD8 ultimate buster-1 40.7 31 0.001 30.0 4.6 38 33-70 28-65 (100)
115 3ts2_A Protein LIN-28 homolog 40.4 10 0.00035 35.5 1.6 19 822-840 97-115 (148)
116 3u30_A Ubiquitin, linear DI-ub 39.0 61 0.0021 30.6 7.1 41 30-70 102-142 (172)
117 3hph_A Integrase, IN; protein- 38.9 90 0.0031 30.3 8.6 66 465-540 61-126 (219)
118 1v6e_A Cytoskeleton-associated 38.9 43 0.0015 28.4 5.3 35 36-70 20-54 (95)
119 3rt3_B Ubiquitin-like protein 38.5 40 0.0014 31.4 5.6 40 30-69 87-126 (159)
120 1we6_A Splicing factor, putati 38.4 31 0.0011 30.2 4.5 38 33-70 39-77 (111)
121 1cl4_A Protein (GAG polyprotei 38.2 6.7 0.00023 30.6 0.0 19 823-841 2-20 (60)
122 3l0w_B Monoubiquitinated proli 37.0 47 0.0016 31.6 5.8 42 29-70 5-46 (169)
123 1c0m_A Protein (integrase); HI 36.7 92 0.0031 30.9 8.4 71 464-539 10-80 (238)
124 1cxq_A Avian sarcoma virus int 36.2 1.1E+02 0.0037 28.0 8.3 71 464-539 11-81 (162)
125 3nyb_B Protein AIR2; polya RNA 35.5 14 0.00047 31.0 1.5 20 822-841 46-65 (83)
126 2k8h_A Small ubiquitin protein 35.2 45 0.0015 29.4 4.9 74 29-111 31-104 (110)
127 1wz0_A Ubiquitin-like protein 34.1 38 0.0013 29.5 4.2 38 32-69 32-69 (104)
128 1wgd_A Homocysteine-responsive 32.9 62 0.0021 27.0 5.4 35 36-70 21-57 (93)
129 1fme_A FSD-EY peptide; beta-BE 32.5 29 0.001 21.6 2.2 19 276-294 7-25 (28)
130 2xzm_5 Ribosomal protein S26E 31.9 30 0.001 30.7 3.1 27 799-830 2-28 (119)
131 1x1m_A Ubiquitin-like protein 31.6 56 0.0019 28.3 5.0 42 28-69 16-72 (107)
132 2lli_A Protein AIR2; RNA surve 31.1 20 0.00068 32.3 2.0 19 823-841 65-83 (124)
133 2lli_A Protein AIR2; RNA surve 30.7 44 0.0015 29.9 4.3 20 821-840 104-123 (124)
134 1bco_A MUA domain II, bacterio 29.9 93 0.0032 32.6 7.4 72 464-538 16-95 (327)
135 3kyd_D Small ubiquitin-related 29.4 75 0.0026 28.2 5.4 37 33-69 49-85 (115)
136 3u5c_a 40S ribosomal protein S 28.0 39 0.0013 30.0 3.1 27 799-830 2-28 (119)
137 2jxx_A Nfatc2-interacting prot 28.0 97 0.0033 26.6 5.7 52 32-87 33-85 (97)
138 1wf9_A NPL4 family protein; be 28.0 33 0.0011 29.9 2.8 36 33-69 16-52 (107)
139 1wia_A Hypothetical ubiquitin- 26.3 58 0.002 27.3 4.1 35 32-69 15-49 (95)
140 3av9_A Integrase, IN; protein- 25.9 1.4E+02 0.0047 28.0 7.2 67 463-539 28-94 (183)
141 3alr_A Nanos protein; zinc-fin 25.8 21 0.00071 30.9 0.9 21 821-841 70-93 (106)
142 3u5e_m 60S ribosomal protein L 25.4 15 0.00051 33.3 0.0 40 30-69 6-45 (128)
143 2kvr_A Ubiquitin carboxyl-term 25.2 65 0.0022 29.3 4.3 37 35-71 56-92 (130)
144 2bw3_A Transposase; DNA recomb 24.9 2.2E+02 0.0075 31.8 9.8 67 494-564 131-201 (534)
145 2jya_A AGR_C_3324P, uncharacte 24.6 46 0.0016 29.1 3.0 32 272-307 49-80 (106)
146 2x78_A Integrase; viral protei 24.1 1.8E+02 0.0061 27.4 7.7 70 464-539 13-83 (200)
147 2dzm_A FAS-associated factor 1 23.3 72 0.0025 27.5 4.0 37 33-69 17-53 (100)
148 1c6v_A Protein (SIV integrase) 23.2 1.8E+02 0.006 26.1 7.2 63 465-537 10-72 (164)
149 1k8r_B Protein kinase BYR2; si 23.2 92 0.0031 26.4 4.3 74 29-107 3-78 (110)
150 3f2k_A Histone-lysine N-methyl 22.9 2E+02 0.0068 28.2 7.9 60 474-536 65-134 (226)
151 3r45_C Holliday junction recog 22.8 67 0.0023 25.9 3.3 26 47-83 30-55 (81)
152 2fnj_B Transcription elongatio 22.8 1.2E+02 0.0042 27.0 5.5 41 29-69 5-46 (118)
153 2xzm_9 RPS31E; ribosome, trans 22.5 18 0.00062 35.2 0.0 41 30-70 6-46 (189)
154 2nrr_A Uvrabc system protein C 22.0 1.5E+02 0.005 27.9 6.1 62 466-546 38-100 (159)
155 2kdb_A Homocysteine-responsive 21.8 1.2E+02 0.0041 25.9 5.2 38 32-69 31-72 (99)
156 3ai5_A Yeast enhanced green fl 20.9 1.1E+02 0.0036 32.2 5.5 41 30-70 239-279 (307)
157 1y8x_B Ubiquitin-activating en 20.3 84 0.0029 27.1 3.7 57 33-90 3-59 (98)
No 1
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=99.01 E-value=9.6e-10 Score=93.94 Aligned_cols=69 Identities=17% Similarity=0.354 Sum_probs=60.8
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCc---eeEEEEEecc
Q 003176 33 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGS---VTADVFVIGT 107 (842)
Q Consensus 33 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~---~~~~v~~~~~ 107 (842)
|||+|||.++|.++|+||.+|+.+.|| .++.|.|+ |.+.||+|.+.|||++.+|..|.+ ..++|++.+-
T Consensus 16 ~GEkRIi~f~RPv~f~eL~~Kv~~~fG---q~ldL~y~---n~EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~ 87 (103)
T 2cu1_A 16 RGEKRILQFPRPVKLEDLRSKAKIAFG---QSMDLHYT---NNELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVIN 87 (103)
T ss_dssp TTEEEEEEEESSCCHHHHHHHHHHHHS---SCEEEEEC---SSSSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEEC
T ss_pred cCeEEEEeccCCccHHHHHHHHHHHhC---CeeeEEEe---cceEEEeccCHHHHHHHHHHHccCCcccceEEEEecC
Confidence 899999999999999999999999999 68899999 779999999999999988854432 4578877763
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=98.08 E-value=2.1e-05 Score=67.58 Aligned_cols=72 Identities=13% Similarity=0.268 Sum_probs=57.8
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCC-cceEEEEecCCCCCceEeecChHHHHHHHhcc--CCceeEEEEEec
Q 003176 33 GGEANAVAINPETHFGDLKLKLAELLNLEY-KSLSVKYFLPGNKQTLITICNDKDLKRMFDFH--EGSVTADVFVIG 106 (842)
Q Consensus 33 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~--~~~~~~~v~~~~ 106 (842)
+|+.+++.|+.+++|.+|..|+.++|++.. +.+++||- .|+.-+|++++|+||+..+..+ .+...+.|+|++
T Consensus 14 ~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~--DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ihvf~ 88 (89)
T 1vd2_A 14 RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI--DEEGDPCTVSSQLELEEAFRLYELNKDSELLIHVFP 88 (89)
T ss_dssp SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC--CSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE--CCCCCcccccCHHHHHHHHHHHHccCCCCEEEEEcc
Confidence 367999999999999999999999999864 46999994 4558899999999999998822 122246666665
No 3
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=97.69 E-value=0.00022 Score=59.47 Aligned_cols=72 Identities=18% Similarity=0.427 Sum_probs=60.9
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhc---cCCceeEEEEEe
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDF---HEGSVTADVFVI 105 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~---~~~~~~~~v~~~ 105 (842)
.+|. ||.|||-++|-+.|.|+.+|+...|| ..+.+.|. +..-+|++.|-+||++-++- +..-..++|.+.
T Consensus 9 fE~~-gEKRIi~f~RPvkf~dl~qkv~~afG---q~ldl~y~---nnEL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~ 81 (94)
T 2jrh_A 9 FEHN-GERRIIAFSRPVKYEDVEHKVTTVFG---QPLDLHYM---NNELSILLKNQDDLDKAIDILDRSSSMKSLRILLL 81 (94)
T ss_dssp EEET-TEEEEEEECSSCCHHHHHHHHHHHHC---SSEEEEEE---CSSCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEE
T ss_pred EEec-CceEEEecCCCccHHHHHHHHHHHhC---CeeeeEEe---cceeEEeccCHHHHHHHHHHhccCccccceEEEEE
Confidence 4554 79999999999999999999999998 78899998 77899999999999998763 333345888887
Q ss_pred cc
Q 003176 106 GT 107 (842)
Q Consensus 106 ~~ 107 (842)
..
T Consensus 82 ~~ 83 (94)
T 2jrh_A 82 SQ 83 (94)
T ss_dssp EC
T ss_pred cC
Confidence 74
No 4
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=97.64 E-value=0.00014 Score=61.47 Aligned_cols=72 Identities=10% Similarity=0.230 Sum_probs=61.4
Q ss_pred CeEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCceeEEEEE
Q 003176 28 SLSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFV 104 (842)
Q Consensus 28 ~~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~~~~~v~~ 104 (842)
++.|. .|-+|.|+++++|++|..+|++.+.+..+.++|.|.=| +...++ +.+|+||+.++....+. ++.++.
T Consensus 9 KV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~-~s~~~v-i~~d~dl~~aw~~~~n~-~LtL~C 80 (83)
T 1oey_A 9 KVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR-DSNELV-PLSEDSMKDAWGQVKNY-CLTLWC 80 (83)
T ss_dssp EEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT-TCSSCE-ECCTTTHHHHHTTCBTT-EEEEEE
T ss_pred EEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC-CCCCee-ccChHHHHHHHHhccCC-cEEEEE
Confidence 46777 89999999999999999999999999888999999766 557778 99999999999986554 365553
No 5
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=97.59 E-value=0.00037 Score=59.62 Aligned_cols=72 Identities=18% Similarity=0.420 Sum_probs=59.8
Q ss_pred CeEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhcc---CCceeEEEEE
Q 003176 28 SLSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFH---EGSVTADVFV 104 (842)
Q Consensus 28 ~~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~---~~~~~~~v~~ 104 (842)
+++|. ||.|||-++|-+.|.|+.+|+...|| ..+.+.|. +..-+|++.|-+||++-++-. ..-..++|.+
T Consensus 35 KfE~~-gEKRIiqf~RPvkf~dl~qkv~~afG---q~ldl~y~---nnEL~IPL~~Q~DLDkAvelLDrs~~mkSLRIlL 107 (111)
T 2c60_A 35 KFEHN-GERRIIAFSRPVKYEDVEHKVTTVFG---QPLDLHYM---NNELSILLKNQDDLDKAIDILDRSSSMKSLRILL 107 (111)
T ss_dssp EEEET-TEEEEEEECSSCCHHHHHHHHHHHHS---SCCEEEEE---CSSCEEECCSHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred EEEec-CceEEEecCCCccHHHHHHHHHHHhC---CeeeeEEe---cceEEEecccHHHHHHHHHHhccCccccceEEEE
Confidence 45564 79999999999999999999999998 77889998 778999999999999988732 2223478877
Q ss_pred ec
Q 003176 105 IG 106 (842)
Q Consensus 105 ~~ 106 (842)
..
T Consensus 108 ~~ 109 (111)
T 2c60_A 108 LS 109 (111)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 6
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=97.58 E-value=0.00034 Score=59.16 Aligned_cols=72 Identities=15% Similarity=0.297 Sum_probs=59.7
Q ss_pred CeEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhcc---CCceeEEEEE
Q 003176 28 SLSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFH---EGSVTADVFV 104 (842)
Q Consensus 28 ~~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~---~~~~~~~v~~ 104 (842)
+.+|. ||.|||-++|-+.|.|+.+|+...|| ..+.+.|. +..-+|++.|-+||++-+|-. ..-..++|.+
T Consensus 24 KfE~~-gEkRIi~f~RPv~f~el~~kv~~afG---q~ldl~y~---nnEL~iPL~~Q~DLDkAvelLDrs~~~kSLrIlL 96 (100)
T 2npt_B 24 KFEHR-GEKRILQFPRPVKLEDLRSKAKIAFG---QSMDLHYT---NNELVIPLTTQDDLDKAVELLDRSIHMKSLKILL 96 (100)
T ss_dssp EEEET-TEEEEEEECSSCCHHHHHHHHHHHHT---SCEEEEEE---ETTEEEECCCHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred EEEec-CceEEEecCCCccHHHHHHHHHHHhC---CeeeeEEe---cceeEEecccHHHHHHHHHHhccCccccceEEEE
Confidence 34554 79999999999999999999999998 78899998 778999999999999988732 2223478877
Q ss_pred ec
Q 003176 105 IG 106 (842)
Q Consensus 105 ~~ 106 (842)
..
T Consensus 97 ~~ 98 (100)
T 2npt_B 97 VI 98 (100)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 7
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=97.41 E-value=0.00054 Score=60.40 Aligned_cols=71 Identities=13% Similarity=0.216 Sum_probs=60.0
Q ss_pred ecCceEEEEeCCC-----------CChHHHHHHHHHHh-CCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCcee
Q 003176 32 DGGEANAVAINPE-----------THFGDLKLKLAELL-NLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVT 99 (842)
Q Consensus 32 ~gg~~~~~~v~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~~~ 99 (842)
.|+|.|=++++++ .||.+|..++.+.| ++....++++|. .|+.-||++++|++|...+..... ..
T Consensus 18 ~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~--DedGDlItiSsDeEL~~Al~~~~~-~~ 94 (102)
T 2kkc_A 18 AAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYR--AERGDLVAFSSDEELTMAMSYVKD-DI 94 (102)
T ss_dssp CEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTTCCEEEECSHHHHHHHHHHCCS-SE
T ss_pred CCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEE--CCCCCEEEecCHHHHHHHHHhcCC-Ce
Confidence 4788899999864 58999999999999 566568999997 566889999999999999987663 47
Q ss_pred EEEEEe
Q 003176 100 ADVFVI 105 (842)
Q Consensus 100 ~~v~~~ 105 (842)
+||||-
T Consensus 95 lRlyVk 100 (102)
T 2kkc_A 95 FRIYIK 100 (102)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999985
No 8
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=97.33 E-value=0.00076 Score=57.14 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=61.3
Q ss_pred eecCceEEEEeCCC--CChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCceeEEEEEe
Q 003176 31 YDGGEANAVAINPE--THFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVI 105 (842)
Q Consensus 31 y~gg~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~~~~~v~~~ 105 (842)
.-|+|.|=.+++|+ .+|.+|..++..++++...++++.|+= ++--||+++|||+|.+-+..... -+||||-
T Consensus 12 kf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D--~dGDLlpInnDdnl~~Al~~a~p--lLRl~Iq 84 (86)
T 1wmh_B 12 KFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD--AHGDLLPLTNDDSLHRALASGPP--PLRLLVQ 84 (86)
T ss_dssp EETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC--TTSCEEECCSHHHHHHHTTSSSS--CEEEEEE
T ss_pred ecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC--CCCCEeeecCHHHHHHHHHhCCC--cEEEEEE
Confidence 34889999999977 899999999999999887799999983 56789999999999999886633 7999874
No 9
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=97.26 E-value=0.00043 Score=60.24 Aligned_cols=58 Identities=14% Similarity=0.231 Sum_probs=49.3
Q ss_pred CceEEEEeCCCCChHHHHHHHHHHhCCCC-----cceEEEEecCCCCCceEeecChHHHHHHHhc
Q 003176 34 GEANAVAINPETHFGDLKLKLAELLNLEY-----KSLSVKYFLPGNKQTLITICNDKDLKRMFDF 93 (842)
Q Consensus 34 g~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~ 93 (842)
|+++.|.|+.+|+|.+|..||.+.+++.. ..+.|||+ .|+.-.|++.+|+||+..++-
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYk--DEdGD~Vtl~sddDl~~A~e~ 84 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DEDGDFVVLGSDEDWNVAKEM 84 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEE--CSSSCEEEECSHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEE--cCCCCEEEEcCHHHHHHHHHH
Confidence 78999999999999999999999997641 23689997 356689999999999988773
No 10
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=97.17 E-value=0.0015 Score=58.68 Aligned_cols=71 Identities=13% Similarity=0.207 Sum_probs=60.4
Q ss_pred ecCceEEEEeCCC-----------CChHHHHHHHHHHh-CCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCcee
Q 003176 32 DGGEANAVAINPE-----------THFGDLKLKLAELL-NLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVT 99 (842)
Q Consensus 32 ~gg~~~~~~v~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~~~ 99 (842)
.++|.|=++++++ .||.+|..++.++| ++....++++|. .++.-||++++|++|..-+..... ..
T Consensus 33 ~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~Yk--DEdGDlItISsDeEL~~Al~~~~~-~~ 109 (117)
T 2ktr_A 33 AAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYR--AERGDLVAFSSDEELTMAMSYVKD-DI 109 (117)
T ss_dssp CEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTTCCEEEECSHHHHHHHHHHCCS-SE
T ss_pred CCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEE--CCCCCEEEecCHHHHHHHHHhcCC-Ce
Confidence 4689999999865 39999999999999 676668999997 566789999999999998887653 47
Q ss_pred EEEEEe
Q 003176 100 ADVFVI 105 (842)
Q Consensus 100 ~~v~~~ 105 (842)
+||||-
T Consensus 110 lRlyVk 115 (117)
T 2ktr_A 110 FRIYIK 115 (117)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 899985
No 11
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=96.77 E-value=0.0021 Score=53.64 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=49.0
Q ss_pred ceEEEEeCCCCChHHHHHHHHHHhCCC-----CcceEEEEecCCCCCceEeecChHHHHHHHh
Q 003176 35 EANAVAINPETHFGDLKLKLAELLNLE-----YKSLSVKYFLPGNKQTLITICNDKDLKRMFD 92 (842)
Q Consensus 35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~ 92 (842)
+++.|.|+.+|+|.+|+.||.+.+++. .+.+.+||+ .|+.-.|++.+|+||+.-++
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYk--DEdGD~Vti~sddDl~~A~~ 62 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DEDGDFVVLGSDEDWNVAKE 62 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEE--ETTTEEEECCSTTHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEE--cCCCCEEEEcCHHHHHHHHH
Confidence 678999999999999999999999865 356899996 44778999999999988766
No 12
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=95.28 E-value=0.076 Score=44.51 Aligned_cols=62 Identities=15% Similarity=0.267 Sum_probs=47.8
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCC-CceEeecChHHHHHHHhccCC
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNK-QTLITICNDKDLKRMFDFHEG 96 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~-~~l~~~~~d~dl~~m~~~~~~ 96 (842)
+.|. |+--+|.|+.+|+|++|..||++.+.++ .+.+-+.. +|+ -. .|.+|+||+..++.+..
T Consensus 17 ~yy~-DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~yk-de~~g~--~i~sD~dl~~aiqrn~K 79 (85)
T 1ip9_A 17 FYYK-DDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKL-FDGSGE--EIKTDSQVSNIIQAKLK 79 (85)
T ss_dssp ECBT-TCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECC-SSSCCS--CCCSHHHHHHHHHTTCC
T ss_pred EEec-CcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEec-CCCCCC--cccCHHHHHHHHHhcCe
Confidence 3455 4778899999999999999999999874 33333333 554 33 99999999999987754
No 13
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=94.06 E-value=0.17 Score=42.67 Aligned_cols=56 Identities=13% Similarity=0.350 Sum_probs=48.0
Q ss_pred cCceEEEEe--CCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHh
Q 003176 33 GGEANAVAI--NPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFD 92 (842)
Q Consensus 33 gg~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~ 92 (842)
.|+++.+.| .|+++|.|+...+...||++ ++.+||. .|++-.|+|+++.++..++.
T Consensus 14 ~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~--DEenD~v~i~Sq~E~eEAlk 71 (87)
T 2bkf_A 14 KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYL--DEENEEVSINSQGEYEEALK 71 (87)
T ss_dssp TTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEE--CTTSCEEEECSHHHHHHHHH
T ss_pred cCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEE--cCCCCEEEEecHHHHHHHHH
Confidence 478888777 45999999999999999985 7899994 55577899999999998876
No 14
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=92.17 E-value=0.27 Score=42.51 Aligned_cols=73 Identities=11% Similarity=0.285 Sum_probs=55.2
Q ss_pred eEeecCceEEEEe--CCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCC-ceeEEEEEe
Q 003176 29 LSYDGGEANAVAI--NPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEG-SVTADVFVI 105 (842)
Q Consensus 29 ~~y~gg~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~-~~~~~v~~~ 105 (842)
+.| .|+++.+.| .++++|.|+...+...|+++ ++.|||. .|++-.|+|.+++++..++.-... ...+++.|.
T Consensus 19 V~f-~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~--DEenD~V~i~Sq~E~eEAlkva~k~~n~L~m~V~ 93 (101)
T 1wj6_A 19 VTF-KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYL--DEENEEVSINSQGEYEEALKMAVKQGNQLQMQVH 93 (101)
T ss_dssp EEE-TTEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEE--CTTSCEECCCSHHHHHHHHHHHHHHTSEEEEECC
T ss_pred EEE-cCCeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEEe--cCCCCEEEEecHHHHHHHHHHhccCCCEEEEEEe
Confidence 345 468888777 56999999999999999975 7899994 455778999999999988773221 123666655
Q ss_pred c
Q 003176 106 G 106 (842)
Q Consensus 106 ~ 106 (842)
.
T Consensus 94 ~ 94 (101)
T 1wj6_A 94 E 94 (101)
T ss_dssp B
T ss_pred e
Confidence 4
No 15
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=91.69 E-value=0.069 Score=35.63 Aligned_cols=22 Identities=23% Similarity=0.712 Sum_probs=18.9
Q ss_pred cceEeCCCCCcCCcCcCCCCCC
Q 003176 820 HRTVTCTKCKGIGHNKLSCKET 841 (842)
Q Consensus 820 kr~~~Cs~C~~~GHN~~tC~~~ 841 (842)
++...|-+|++.||-.+.|+.+
T Consensus 4 r~~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 4 RKVIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCCCBCTTTSCBSSCGGGCCSS
T ss_pred CCCCEEEECCccccCHhHCccc
Confidence 3457899999999999999865
No 16
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=89.47 E-value=1.3 Score=38.33 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=49.4
Q ss_pred cCceEEEEeCCCC----ChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCC
Q 003176 33 GGEANAVAINPET----HFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEG 96 (842)
Q Consensus 33 gg~~~~~~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~ 96 (842)
|-.+|=|.|..++ +|.||+.-+...|. .+.++|+|+=+. --||.|-+|+|+.-|++..-+
T Consensus 17 ~~~irdI~veedl~~~P~ykdLl~lmr~~F~--~~DIaLNYrD~e--GDLIrilddeDv~lmi~~sr~ 80 (107)
T 1oey_J 17 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQ--REDIALNYRDAE--GDLVRLLSDEDVALMVRQARG 80 (107)
T ss_dssp EEEEEEEEECSCTTCCCCHHHHHHHHHHHHC--CSSEEEEEECTT--SCEEECCSHHHHHHHHHHCCC
T ss_pred CceeeeEEEccccccCCCHHHHHHHHHHHhc--ccceeeeeecCC--CCEEEEcchHHHHHHHHHhhc
Confidence 4567778887665 79999999999997 468999997443 459999999999999997754
No 17
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=88.64 E-value=0.2 Score=36.05 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=18.0
Q ss_pred eEeCCCCCcCCcCcCCCCCC
Q 003176 822 TVTCTKCKGIGHNKLSCKET 841 (842)
Q Consensus 822 ~~~Cs~C~~~GHN~~tC~~~ 841 (842)
...|-+|++.||-.+.||..
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~ 29 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKK 29 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSS
T ss_pred CCeeeECCCCCcchhhCcCC
Confidence 46899999999999999974
No 18
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=88.62 E-value=0.87 Score=37.57 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=33.6
Q ss_pred EEEEEecCCCCceEEEEEEeCCcceEEEEeecCCCccC
Q 003176 311 RASGMCAAEGCSWSFYASWVPSERVFKIKKMNETHTCG 348 (842)
Q Consensus 311 r~~~~C~~~gCpwri~as~~~~~~~w~I~~~~~~HnC~ 348 (842)
|-.++|+..||+++=...+..++....+.++.++|||.
T Consensus 35 RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~ 72 (76)
T 2ayd_A 35 RSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHD 72 (76)
T ss_dssp EEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSC
T ss_pred eeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCC
Confidence 56689999999999999888777777888999999998
No 19
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=87.97 E-value=0.23 Score=32.16 Aligned_cols=19 Identities=42% Similarity=0.803 Sum_probs=17.2
Q ss_pred EeCCCCCcCCcCcCCCCCC
Q 003176 823 VTCTKCKGIGHNKLSCKET 841 (842)
Q Consensus 823 ~~Cs~C~~~GHN~~tC~~~ 841 (842)
..|-+|++.||..+.||..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 4799999999999999975
No 20
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=87.79 E-value=1.1 Score=37.25 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=33.0
Q ss_pred EEEEEecCCCCceEEEEEEeCCcceEEEEeecCCCccC
Q 003176 311 RASGMCAAEGCSWSFYASWVPSERVFKIKKMNETHTCG 348 (842)
Q Consensus 311 r~~~~C~~~gCpwri~as~~~~~~~w~I~~~~~~HnC~ 348 (842)
|-.++|+..||+++-...+..++....+.++.++|||.
T Consensus 38 RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~ 75 (78)
T 1wj2_A 38 RSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHD 75 (78)
T ss_dssp EEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSC
T ss_pred eEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCC
Confidence 55689999999999999887766677788999999998
No 21
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=87.37 E-value=9.3 Score=40.60 Aligned_cols=56 Identities=14% Similarity=0.276 Sum_probs=40.1
Q ss_pred cccceEEEEEEecCCCCeEEEEEEEec---CCChhhHHHHHHHHHHhh----cC----CCcEEEEecCch
Q 003176 477 KYHEILLTATALDGDDCIFPVAFAIVD---TENDDSWNWFLEELRSAV----SS----SRSITFVSDKQK 535 (842)
Q Consensus 477 ~y~~~Ll~a~g~D~~~~~~plafalv~---~Et~es~~WfL~~lk~~~----~~----~~p~~iisD~~~ 535 (842)
.+++.+++..+.+..| .+++.+++ .-+.+.|.-+|+.+...+ +. ..+.+|+.|...
T Consensus 186 ~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 186 RFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp TTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred CcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 4566777777788777 56777776 567888988888876654 22 346789999865
No 22
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=85.29 E-value=0.49 Score=36.71 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=17.9
Q ss_pred eEeCCCCCcCCcCcCCCCCC
Q 003176 822 TVTCTKCKGIGHNKLSCKET 841 (842)
Q Consensus 822 ~~~Cs~C~~~GHN~~tC~~~ 841 (842)
..+|-+|++.||-.+.||..
T Consensus 23 ~~~C~~Cge~GH~ardCp~~ 42 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPKK 42 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTTC
T ss_pred CCcceeCCCCCcccccCcCC
Confidence 45899999999999999974
No 23
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=83.93 E-value=0.5 Score=35.60 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=14.4
Q ss_pred eEeCCCCCcCCcCcCCCCCC
Q 003176 822 TVTCTKCKGIGHNKLSCKET 841 (842)
Q Consensus 822 ~~~Cs~C~~~GHN~~tC~~~ 841 (842)
...|-+|++.||-.+.||..
T Consensus 27 ~~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 27 RQGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CCSCSSSCCSSCCGGGCCSS
T ss_pred CCeeCcCCCcCCccCCCcCC
Confidence 34677778888887777753
No 24
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=79.30 E-value=3.2 Score=33.45 Aligned_cols=41 Identities=10% Similarity=0.225 Sum_probs=36.8
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
++..+|++..+.|+.+.+..+|+.+|++..+++.+...|-|
T Consensus 5 vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp EEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 34557888899999999999999999999999999888888
No 25
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=78.09 E-value=0.8 Score=32.59 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=16.4
Q ss_pred EeCCCCCcCCcCcCCCCC
Q 003176 823 VTCTKCKGIGHNKLSCKE 840 (842)
Q Consensus 823 ~~Cs~C~~~GHN~~tC~~ 840 (842)
..|-+|++.||-.+.||+
T Consensus 22 ~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 22 EGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp SSCTTTCCSSSCTTTSCC
T ss_pred CccccCCCCCCccCcCcC
Confidence 479999999999999985
No 26
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=76.54 E-value=4.7 Score=32.63 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=34.8
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 33 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 33 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
+|++..+.|+.+.+-.+|+.+|++..|++.+...|-|.
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 49 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 49 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 67888899999999999999999999999998888873
No 27
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=76.07 E-value=1.2 Score=31.75 Aligned_cols=18 Identities=33% Similarity=0.822 Sum_probs=16.4
Q ss_pred eCCCCCcCCcCcCCCCCC
Q 003176 824 TCTKCKGIGHNKLSCKET 841 (842)
Q Consensus 824 ~Cs~C~~~GHN~~tC~~~ 841 (842)
+|-+|++.||-.+.||..
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 699999999999999964
No 28
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=75.81 E-value=4.1 Score=32.74 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=36.2
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 30 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 30 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
+..+|++..+.|+.+.+-.+|+.++++..+++.+...|-|.
T Consensus 6 k~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 1ndd_A 6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_dssp ECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred ECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 34468888899999999999999999999999998888883
No 29
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=74.88 E-value=4.7 Score=32.98 Aligned_cols=41 Identities=10% Similarity=0.222 Sum_probs=36.7
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
++..+|++..+.|+.+.+-.+|+.+|++..+++++...|-|
T Consensus 9 Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 49 (79)
T 3phx_B 9 VRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (79)
T ss_dssp EECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE
Confidence 34557888999999999999999999999999998888888
No 30
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=73.31 E-value=3.5 Score=35.12 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=47.6
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCceeEEEEEec
Q 003176 30 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIG 106 (842)
Q Consensus 30 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~~~~~v~~~~ 106 (842)
-|.+|+..-|-|..+++..|...+.|+.+|++.+.+.|||+ +..++ |--.|.|..-...+.+-+..
T Consensus 15 l~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~-----~k~lD------LSlpfRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 15 LAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQ-----RTVLD------LSLQWRFANLPNNAKLEMVP 80 (90)
T ss_dssp ECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEET-----TEEES------SSCBHHHHCCCSSCEEEEEC
T ss_pred EcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeC-----CEecc------ccceeEecCCCCCCEEEEEE
Confidence 45568999999999999999999999999999987777774 23333 33356666444444444444
No 31
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.29 E-value=5.8 Score=32.42 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=35.0
Q ss_pred eecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 31 YDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 31 y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
..+|++..+.|+.+.+-.+|+.+|++..+++.+...|-|
T Consensus 14 ~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 14 ALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp ETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred eCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 345778889999999999999999999999999888888
No 32
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=73.13 E-value=4.3 Score=34.93 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=41.8
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChH
Q 003176 33 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDK 85 (842)
Q Consensus 33 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~ 85 (842)
+|+..-+.++.+|+-.+|+.+|+..+|++...+.|.|.-+.++...+.+.+|.
T Consensus 21 ~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~ 73 (97)
T 1wjn_A 21 ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDL 73 (97)
T ss_dssp SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCc
Confidence 55666688999999999999999999999999999997544334455555543
No 33
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=72.70 E-value=1.5 Score=30.77 Aligned_cols=15 Identities=33% Similarity=0.868 Sum_probs=7.3
Q ss_pred CCCCCcCCcCcCCCC
Q 003176 825 CTKCKGIGHNKLSCK 839 (842)
Q Consensus 825 Cs~C~~~GHN~~tC~ 839 (842)
|-+|++.||-.+.||
T Consensus 3 C~~Cg~~GH~~~~C~ 17 (37)
T 2bl6_A 3 CYNCGKPGHLSSQCR 17 (37)
T ss_dssp BSSSCCSSCCTTTSS
T ss_pred ccccCCCCcchhhCc
Confidence 444444444444444
No 34
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=72.50 E-value=7.9 Score=37.87 Aligned_cols=58 Identities=10% Similarity=0.154 Sum_probs=48.8
Q ss_pred EEEEeeCCeeccCCCC-----CeEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 12 ILICQSGGEFVTKDDG-----SLSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 12 ~~~~~~gg~~~~~~~~-----~~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
++++|-+|.+....|. .++...|++..+.|+.+.|-.+|+.+|++..+++++...|-|
T Consensus 88 r~~~s~dg~~y~T~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~ 150 (189)
T 3q3f_A 88 RILYSSDWLIYKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 150 (189)
T ss_dssp EEEEETTCCEEEESCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred ceEecCCCcEEEcccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEE
Confidence 6788888886655554 355568999999999999999999999999999988888877
No 35
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=72.45 E-value=5.4 Score=32.90 Aligned_cols=40 Identities=10% Similarity=0.216 Sum_probs=36.0
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 30 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 30 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
+...|++..+.|+.+.+-.+|+.+|++..+++.+...|-|
T Consensus 9 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~ 48 (85)
T 3mtn_B 9 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp ECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 4456788899999999999999999999999999888888
No 36
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=71.54 E-value=6 Score=33.96 Aligned_cols=41 Identities=10% Similarity=0.225 Sum_probs=36.8
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
++..+|++..+.|+.+.+..+|+.+|++..+++.+...|-|
T Consensus 5 Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp EEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 34557888899999999999999999999999999999988
No 37
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=71.53 E-value=5.8 Score=33.34 Aligned_cols=41 Identities=7% Similarity=0.189 Sum_probs=37.4
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
++..+|++..+.|+.+.+-.+|+.+|.+..++..+...|-|
T Consensus 10 Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 10 VKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp EEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 45667899999999999999999999999999999888888
No 38
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=71.08 E-value=5.7 Score=32.82 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=37.0
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
++...|++..+.|+.+.|-.+|+.+|++..+++.+...|-|.
T Consensus 8 vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~ 49 (85)
T 3n3k_B 8 VKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp EECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 344578889999999999999999999999999998888883
No 39
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=71.02 E-value=1.4 Score=33.83 Aligned_cols=21 Identities=38% Similarity=0.716 Sum_probs=16.0
Q ss_pred ceEeCCCCCcCCcCcCCCCCC
Q 003176 821 RTVTCTKCKGIGHNKLSCKET 841 (842)
Q Consensus 821 r~~~Cs~C~~~GHN~~tC~~~ 841 (842)
+...|-+|++.||-.+.||..
T Consensus 32 ~~~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 32 RKKGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp SCCBCTTTCCBSSCGGGCSSS
T ss_pred CCCEeCCCCCcCCccCCCcCc
Confidence 446788888888888888763
No 40
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=70.79 E-value=7.1 Score=32.49 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=36.0
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 30 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 30 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
+...|++..+.|+.+.+..+|+.+|++..+++.+...|-|.
T Consensus 13 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 53 (87)
T 1wh3_A 13 KNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ 53 (87)
T ss_dssp EETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET
T ss_pred EcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC
Confidence 33457888899999999999999999999999998888883
No 41
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=70.25 E-value=1.7 Score=30.41 Aligned_cols=18 Identities=39% Similarity=0.815 Sum_probs=16.4
Q ss_pred EeCCCCCcCCcCcCCCCC
Q 003176 823 VTCTKCKGIGHNKLSCKE 840 (842)
Q Consensus 823 ~~Cs~C~~~GHN~~tC~~ 840 (842)
..|-+|++.||-.+.||+
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 479999999999999985
No 42
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=70.12 E-value=7.7 Score=32.41 Aligned_cols=42 Identities=7% Similarity=0.029 Sum_probs=37.8
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
++..+|++.-+.|+.+.+-.+|+.+|++..|++.+...|-|.
T Consensus 15 vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 56 (84)
T 2kk8_A 15 VENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD 56 (84)
T ss_dssp EEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 455678999999999999999999999999999998888884
No 43
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=70.00 E-value=6.6 Score=33.03 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=37.0
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
++-.+|++..+.|+.+.|-.+|+.+|++..+++.+...|-|
T Consensus 14 v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 14 IKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp EEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 34567888999999999999999999999999999999988
No 44
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=68.67 E-value=7.5 Score=32.50 Aligned_cols=41 Identities=7% Similarity=0.189 Sum_probs=37.5
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
++..+|.+..+.|+.+.+-.+|+.+|++..+++.+...|-|
T Consensus 22 Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 62 (88)
T 4eew_A 22 VKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 62 (88)
T ss_dssp EEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 56678899999999999999999999999999999888888
No 45
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=68.56 E-value=7.7 Score=32.99 Aligned_cols=41 Identities=10% Similarity=0.225 Sum_probs=37.1
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
++...|++..+.|+.+.+-.+|+.+|++..+++.+...|-|
T Consensus 6 vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 6 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 45567888999999999999999999999999999888888
No 46
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=68.38 E-value=7.2 Score=32.89 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=32.6
Q ss_pred cceeEEEEeeCccEEEEEecC---CCCceEEEEEEeCCcceEEEEeecCCCccCC
Q 003176 298 HRFRYKFKKNETSRASGMCAA---EGCSWSFYASWVPSERVFKIKKMNETHTCGE 349 (842)
Q Consensus 298 ~gf~~r~~ks~~~r~~~~C~~---~gCpwri~as~~~~~~~w~I~~~~~~HnC~~ 349 (842)
.||.|...+....+....|.. .+|+++|.-.. . . + .....|||++
T Consensus 26 ~Gy~Y~~~~~~~~~~yWrC~~~~~~kCrARi~T~~--~--~--~-~~~~~HnH~p 73 (87)
T 2rpr_A 26 ESFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQG--H--R--I-MVMRSHCHQP 73 (87)
T ss_dssp TTEEEEEEEECSSCEEEEEGGGTTSCCCCEEEEET--T--E--E-EECSCCSSCC
T ss_pred CCEEEEeeecCCCcEEEEecCCCCCCCCEEEEEcC--C--C--E-ECCCCcCCCC
Confidence 478888777777778899985 58999988653 2 2 2 2457799985
No 47
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.37 E-value=2 Score=33.11 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=17.5
Q ss_pred ceEeCCCCCcCCcCcCCCCC
Q 003176 821 RTVTCTKCKGIGHNKLSCKE 840 (842)
Q Consensus 821 r~~~Cs~C~~~GHN~~tC~~ 840 (842)
+.+.|=+|++.||-.+.||.
T Consensus 6 ~~~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp SSCCCTTTCCTTSCGGGCSG
T ss_pred CCCccccCCCcCcccccCCC
Confidence 34689999999999999993
No 48
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=67.75 E-value=7.8 Score=31.57 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=35.7
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 30 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 30 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
+...|++..+.|+++.+..+|+.++++..|++.+...|-|
T Consensus 9 k~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~ 48 (79)
T 2uyz_B 9 IGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 48 (79)
T ss_dssp ECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred ECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 3446788889999999999999999999999999888888
No 49
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=67.53 E-value=7.8 Score=32.71 Aligned_cols=42 Identities=10% Similarity=0.187 Sum_probs=37.0
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
++..+|++..+.|+.+.+-.+|+.+|++..|+..+...|-|.
T Consensus 22 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 63 (91)
T 3v6c_B 22 VNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 63 (91)
T ss_dssp EECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC
Confidence 344578888999999999999999999999999988888883
No 50
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=67.10 E-value=8 Score=33.24 Aligned_cols=42 Identities=7% Similarity=0.145 Sum_probs=37.4
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
++..+|++..+.|+.+.+-.+|+.+|++..+++.+...|-|.
T Consensus 27 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 68 (98)
T 4hcn_B 27 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 68 (98)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 455678889999999999999999999999999988888883
No 51
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=67.03 E-value=6.7 Score=32.66 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=35.7
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 30 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 30 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
+..+|++..+.|+.+.+-.+|+.+|++..+++.+...|-|
T Consensus 18 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 57 (88)
T 3dbh_I 18 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 57 (88)
T ss_dssp ECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred EcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 3456788889999999999999999999999998888888
No 52
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=66.38 E-value=11 Score=31.52 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=35.7
Q ss_pred eecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 31 YDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 31 y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
-.+|++..+.|+.+.+..+|+.+|++..+++.+...|-|
T Consensus 18 ~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (85)
T 2kd0_A 18 KFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF 56 (85)
T ss_dssp EETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE
T ss_pred EECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 357888899999999999999999999999999888887
No 53
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=66.18 E-value=2.1 Score=32.05 Aligned_cols=22 Identities=23% Similarity=0.712 Sum_probs=19.1
Q ss_pred cceEeCCCCCcCCcCcCCCCCC
Q 003176 820 HRTVTCTKCKGIGHNKLSCKET 841 (842)
Q Consensus 820 kr~~~Cs~C~~~GHN~~tC~~~ 841 (842)
++...|-+|++.||..+.||..
T Consensus 4 ~r~~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 4 RKVIRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CCCCBCTTTCCBTCCTTTCCCS
T ss_pred CCcCeeeecCCCCcChhhCcCC
Confidence 4567899999999999999864
No 54
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=65.73 E-value=9.2 Score=32.11 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=37.1
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
++..+|++..+.|+.+.|-.+|+.+|++..+++.+...|-|.
T Consensus 5 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 46 (88)
T 4fbj_B 5 VKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (88)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC
Confidence 345578898999999999999999999999999988888883
No 55
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=64.79 E-value=9.1 Score=32.88 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=36.1
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 30 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 30 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
+...|++..+.|.++.+..+|+.++++..|++.+...|-|
T Consensus 27 k~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif 66 (97)
T 1wyw_B 27 IGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 66 (97)
T ss_dssp ECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 3456888899999999999999999999999999988888
No 56
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=64.07 E-value=2.4 Score=32.51 Aligned_cols=22 Identities=32% Similarity=0.735 Sum_probs=18.8
Q ss_pred cceEeCCCCCcCCcCcCCCCCC
Q 003176 820 HRTVTCTKCKGIGHNKLSCKET 841 (842)
Q Consensus 820 kr~~~Cs~C~~~GHN~~tC~~~ 841 (842)
++...|-+|++.||-.+.||..
T Consensus 10 ~~~~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 10 RKTVKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp GGTCBCTTTCCBSSCGGGCSSC
T ss_pred CCCcceeeeCCCCcChhhcCCC
Confidence 4456899999999999999864
No 57
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=63.65 E-value=10 Score=31.97 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=39.0
Q ss_pred CCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhcc
Q 003176 43 PETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFH 94 (842)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~ 94 (842)
..++|.|+..-|...+. +...-.|.| ..|+.-=|+|.+||.|+.|+..+
T Consensus 35 ~~L~FrDvL~~I~~vmP-~aT~TAFeY--EDE~gDRITVRSDeE~kAMlsyy 83 (106)
T 2npt_A 35 PQLLFRDVLDVIGQVLP-EATTTAFEY--EDEDGDRITVRSDEEMKAMLSYY 83 (106)
T ss_dssp -CCCHHHHHHHHHHHST-TSCCSEEEE--ECTTSCEEEECSHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhCc-cceeeeeee--ccccCCeeEEcchHHHHHHHHHH
Confidence 67999999999999994 234556777 45666679999999999999844
No 58
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=62.92 E-value=12 Score=33.05 Aligned_cols=39 Identities=10% Similarity=0.221 Sum_probs=35.6
Q ss_pred eecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 31 YDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 31 y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
...|++..+.|+.+.+..+|+.+|++..+++.+...|-|
T Consensus 42 ~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 80 (111)
T 2ojr_A 42 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp CSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE
Confidence 346888899999999999999999999999999888888
No 59
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=62.20 E-value=8.9 Score=32.17 Aligned_cols=40 Identities=10% Similarity=0.182 Sum_probs=35.0
Q ss_pred eecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 31 YDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 31 y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
...|++..+.|+.+.+..+|+.+|++..+++.+...|-|.
T Consensus 11 ~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 50 (88)
T 2hj8_A 11 NNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (88)
T ss_dssp ETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS
T ss_pred CCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 3457788899999999999999999999999998888773
No 60
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=62.07 E-value=11 Score=32.32 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=39.2
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEec
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFL 71 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l 71 (842)
+...+|.+..+.|..+.+=.+|+.+|++..|++++...|+|.-
T Consensus 26 Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~G 68 (93)
T 3plu_A 26 VNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGG 68 (93)
T ss_dssp EECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred EECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCC
Confidence 4556899999999999999999999999999999999999953
No 61
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=61.95 E-value=17 Score=31.17 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=31.9
Q ss_pred eEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 36 ANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 36 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
+--+.|+.+++-.+|+.||.+..|++++...|-|.
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 56678999999999999999999999999999884
No 62
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=61.76 E-value=26 Score=31.71 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=47.4
Q ss_pred CeEEeccccccccccceEEEEEEecCCCCeEEEEEEEecCCChhhHHHHHHHHHHhhcCCCcEEEEecCchhHHH
Q 003176 465 PLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLME 539 (842)
Q Consensus 465 ~vl~iD~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~Et~es~~WfL~~lk~~~~~~~p~~iisD~~~~l~~ 539 (842)
.++.+|.|+..++ +.++.+|...+.. +++.+ .+++.+...-+|..+....+ |..|.||+.....+
T Consensus 3 ~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~f~s 67 (152)
T 3kks_A 3 HLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQVI-PEETALQVALCILQLIQRYT---VLHLHSDNGPCFTA 67 (152)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHHHHHSC---CSEEEECSCHHHHS
T ss_pred cEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEEEe-CCcCHHHHHHHHHHHHHHhC---CcEEecCCchHhhH
Confidence 5788999988433 4566677766554 56655 47788887777777777665 89999999988764
No 63
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=61.36 E-value=14 Score=29.85 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=33.3
Q ss_pred ecCce-EEEE-eCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 32 DGGEA-NAVA-INPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 32 ~gg~~-~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
.+|++ ..+. |+.+.+-.+|+.+|++..+++.+...|-|
T Consensus 10 ~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~ 49 (78)
T 2faz_A 10 MDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY 49 (78)
T ss_dssp TTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 35666 4788 99999999999999999999999888888
No 64
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=61.08 E-value=6.2 Score=33.07 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=35.5
Q ss_pred eEeecCceEEEE-eCCCCChHHHHHHHHHHhCCCCcceEEEEecC
Q 003176 29 LSYDGGEANAVA-INPETHFGDLKLKLAELLNLEYKSLSVKYFLP 72 (842)
Q Consensus 29 ~~y~gg~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~ 72 (842)
++..+|. +++. |+.+.+..||+.+|++..++..+...|.|--|
T Consensus 5 vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p 48 (86)
T 2kzr_A 5 CKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYP 48 (86)
T ss_dssp EEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSC
T ss_pred EEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCC
Confidence 5677885 4577 99999999999999999999877778877544
No 65
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=60.71 E-value=14 Score=31.18 Aligned_cols=38 Identities=11% Similarity=0.187 Sum_probs=33.0
Q ss_pred cCceEEEEeCCC-----CChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 33 GGEANAVAINPE-----THFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 33 gg~~~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
+|.+..|.|+.+ .+..+|+.+|.+..+++.+...|-|.
T Consensus 15 ~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 15 SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 355667899985 99999999999999999999999883
No 66
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=60.01 E-value=14 Score=31.45 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=34.0
Q ss_pred eecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 31 YDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 31 y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
..+| +..+.|+.+.+-.+|+.+|++..|++.+...|-|.
T Consensus 22 ~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 60 (94)
T 2kan_A 22 FPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60 (94)
T ss_dssp CSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET
T ss_pred cCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 3455 77789999999999999999999999998888873
No 67
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=59.98 E-value=4 Score=31.90 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.3
Q ss_pred ceEeCCCCCcCCcCcCCCCCC
Q 003176 821 RTVTCTKCKGIGHNKLSCKET 841 (842)
Q Consensus 821 r~~~Cs~C~~~GHN~~tC~~~ 841 (842)
+...|-+|++.||-.+.||..
T Consensus 29 ~~~~C~~Cg~~GH~ar~C~~~ 49 (60)
T 1cl4_A 29 VPGLCPRCKRGKHWANECKSK 49 (60)
T ss_dssp CCCSCSSCSSCSSCSTTCCCT
T ss_pred CCcceeECCCCCCccCcCCCc
Confidence 346899999999999999975
No 68
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=59.73 E-value=14 Score=32.61 Aligned_cols=42 Identities=10% Similarity=0.202 Sum_probs=37.4
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
++...|++..+.|+.+.+-.+|+.+|++..++++....|-|.
T Consensus 40 Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 81 (111)
T 3vdz_A 40 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp EECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC
Confidence 445678899999999999999999999999999988888883
No 69
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=59.73 E-value=13 Score=32.91 Aligned_cols=42 Identities=7% Similarity=0.113 Sum_probs=37.9
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
++...|++..+.|+.+.|-.+|+.+|++..+++.+...|-|.
T Consensus 14 vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 14 AKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA 55 (114)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 456778999999999999999999999999999999999883
No 70
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.94 E-value=4.2 Score=32.24 Aligned_cols=17 Identities=35% Similarity=0.725 Sum_probs=9.4
Q ss_pred eCCCCCcCCcCcCCCCC
Q 003176 824 TCTKCKGIGHNKLSCKE 840 (842)
Q Consensus 824 ~Cs~C~~~GHN~~tC~~ 840 (842)
.|-+|++.||-.+.||.
T Consensus 31 ~C~~Cg~~GH~ar~Cp~ 47 (63)
T 2cqf_A 31 KCHFCQSISHMVASCPL 47 (63)
T ss_dssp CCTTTCCSSSCTTTCTG
T ss_pred ccCCcCCcCCccCcCCC
Confidence 45555555555555553
No 71
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=58.92 E-value=10 Score=33.07 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=35.4
Q ss_pred eecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 31 YDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 31 y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
..+|++..+.|+.+.+..+|+.+|++..|+..+...|-|
T Consensus 30 ~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 68 (106)
T 1ttn_A 30 LSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF 68 (106)
T ss_dssp ETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE
Confidence 347888889999999999999999999999998888888
No 72
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=58.73 E-value=5.2 Score=32.86 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=14.2
Q ss_pred eEeCCCCCcCCcCcCCCCC
Q 003176 822 TVTCTKCKGIGHNKLSCKE 840 (842)
Q Consensus 822 ~~~Cs~C~~~GHN~~tC~~ 840 (842)
...|-+|++.||-.+.||.
T Consensus 46 ~~~C~~Cg~~GH~ar~Cp~ 64 (74)
T 2li8_A 46 PKKCHFCQSISHMVASCPL 64 (74)
T ss_dssp CCCCTTTCCTTSCGGGCTT
T ss_pred CCccCCcCCcCCccCcCcC
Confidence 4567778888888887775
No 73
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=58.08 E-value=17 Score=30.18 Aligned_cols=39 Identities=10% Similarity=0.245 Sum_probs=33.8
Q ss_pred ecC-ceEEE-EeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 32 DGG-EANAV-AINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 32 ~gg-~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
..| ++..+ .|+.+.+-.+|+.+|++..+++.+...|-|.
T Consensus 15 ~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 55 (89)
T 1wy8_A 15 IDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR 55 (89)
T ss_dssp TTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET
T ss_pred CCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 345 67788 5999999999999999999999998888883
No 74
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=57.00 E-value=19 Score=29.62 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=35.6
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHH---hCCCCcceEEEEe
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAEL---LNLEYKSLSVKYF 70 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~y~ 70 (842)
++..+|++..+.|+.+.+-.+|+.+|++. .+++.+...|-|.
T Consensus 10 vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~ 54 (85)
T 2wyq_A 10 LKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 54 (85)
T ss_dssp EEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET
T ss_pred EEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC
Confidence 34556888889999999999999999998 5788888888883
No 75
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=56.49 E-value=9.5 Score=33.37 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=37.5
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
++..+|++..|.|+.+.+-.+|+.+|.+..|++.....|-|.
T Consensus 6 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 47 (106)
T 3m62_B 6 FKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYS 47 (106)
T ss_dssp EECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 455678999999999999999999999999999888888884
No 76
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=56.07 E-value=4.4 Score=31.81 Aligned_cols=19 Identities=37% Similarity=1.017 Sum_probs=17.2
Q ss_pred EeCCCCCcCCcCcCCCCCC
Q 003176 823 VTCTKCKGIGHNKLSCKET 841 (842)
Q Consensus 823 ~~Cs~C~~~GHN~~tC~~~ 841 (842)
..|-+|++.||-.+.||+.
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~ 49 (61)
T 2ihx_A 31 ERCQLCNGMGHNAKQCRKR 49 (61)
T ss_dssp SBCTTTCCBSSCGGGCCCC
T ss_pred CeeCCCCCCCCCcCCCcCC
Confidence 5799999999999999974
No 77
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=55.85 E-value=3.8 Score=32.22 Aligned_cols=20 Identities=25% Similarity=0.617 Sum_probs=17.5
Q ss_pred eEeCCCCCcCCcCcCCCCCC
Q 003176 822 TVTCTKCKGIGHNKLSCKET 841 (842)
Q Consensus 822 ~~~Cs~C~~~GHN~~tC~~~ 841 (842)
...|-+|++.||-.+.||..
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~ 23 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKK 23 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTT
T ss_pred CCcccccCCCCeehhhCcCC
Confidence 34799999999999999974
No 78
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=54.39 E-value=21 Score=28.68 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=34.9
Q ss_pred ecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 32 DGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 32 ~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
..|+.--+.|.++.+++.++.+.|+..|++.+++.|.|
T Consensus 9 ~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f 46 (72)
T 1wm3_A 9 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 46 (72)
T ss_dssp TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE
Confidence 45778889999999999999999999999999999988
No 79
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=53.73 E-value=15 Score=30.93 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=33.9
Q ss_pred eEeecCceEEE-EeCCCCChHHHHHHHHHHhCCCCcceEEE
Q 003176 29 LSYDGGEANAV-AINPETHFGDLKLKLAELLNLEYKSLSVK 68 (842)
Q Consensus 29 ~~y~gg~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (842)
+++ +|++.-| .|+.+.+..+|+.+|.+..++..+...|-
T Consensus 12 Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 12 VKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp EEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred EEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEE
Confidence 444 6788888 99999999999999999999988877777
No 80
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=52.10 E-value=8.8 Score=24.15 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=10.8
Q ss_pred CCCCCCCCCCcccccc
Q 003176 799 PSSTRTPTTHQKRRRK 814 (842)
Q Consensus 799 P~~~r~~GRPKkkR~~ 814 (842)
|...|++||||-...+
T Consensus 2 ptpKrpRgRpkGSKNk 17 (26)
T 2ezd_A 2 PTPKRPRGRPKGSKNK 17 (26)
T ss_dssp CSCCCCSSCCTTCCCC
T ss_pred CCCcCCCCCcCccccc
Confidence 4447889999865433
No 81
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.63 E-value=21 Score=29.86 Aligned_cols=39 Identities=8% Similarity=0.213 Sum_probs=34.2
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEE
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSV 67 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (842)
+.|.+-+.-++.|++.++.+|++--||+.++++...+.|
T Consensus 15 VNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~L 53 (91)
T 2daj_A 15 INFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLL 53 (91)
T ss_dssp EEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEE
T ss_pred EeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEE
Confidence 457778888999999999999999999999999875544
No 82
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=50.77 E-value=24 Score=29.87 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=35.4
Q ss_pred eecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 31 YDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 31 y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
-..|++..+.|+.+.+-.+|+.+|++..+++.+...|-|.
T Consensus 24 Vk~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 24 VRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp EESSSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET
T ss_pred EECCCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC
Confidence 3347888899999999999999999999999998888884
No 83
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=50.43 E-value=16 Score=31.28 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=32.8
Q ss_pred cCceE-EEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 33 GGEAN-AVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 33 gg~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
+|++. -|.|+.+.+..+|+.+|.+..|+..+...|-|
T Consensus 15 ~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~ 52 (96)
T 1wgg_A 15 GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMV 52 (96)
T ss_dssp TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEE
T ss_pred CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 67788 49999999999999999999999888777776
No 84
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=50.05 E-value=28 Score=28.58 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=34.6
Q ss_pred EeecC-ceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 30 SYDGG-EANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 30 ~y~gg-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
.-..| +.--+.|.++.+++.|+.+.++..|++.+++.|.|
T Consensus 13 ~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f 53 (79)
T 3a4r_A 13 QGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF 53 (79)
T ss_dssp ECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE
T ss_pred EeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 33456 36778999999999999999999999999888888
No 85
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=49.97 E-value=23 Score=30.73 Aligned_cols=38 Identities=8% Similarity=0.163 Sum_probs=32.7
Q ss_pred ecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 32 DGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 32 ~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
.+|. ..+.|+.+.+..+|+.+|.+..++..+...|-|.
T Consensus 25 ~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 25 PKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp SSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET
T ss_pred CCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 4454 4689999999999999999999999998898883
No 86
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=49.80 E-value=27 Score=30.04 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=33.0
Q ss_pred CceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 34 GEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 34 g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
|.+..+.|+.+.+-.+|+.+|++..|++.+...|-|
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 69 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF 69 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 567788999999999999999999999999888888
No 87
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.79 E-value=24 Score=31.54 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=35.7
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 33 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 33 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
+|+...|.|+.+.+..||+.++++.++++.+...|-|.
T Consensus 25 ~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~ 62 (118)
T 2daf_A 25 VGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS 62 (118)
T ss_dssp TCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC
Confidence 78888999999999999999999999999999999995
No 88
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=49.79 E-value=43 Score=30.60 Aligned_cols=41 Identities=10% Similarity=0.225 Sum_probs=36.9
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
++...|++..+.|+.+.+..+|+.++++..+++.+...|-|
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~ 121 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE
Confidence 44557889999999999999999999999999999888888
No 89
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=49.75 E-value=21 Score=31.56 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=35.6
Q ss_pred ecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 32 DGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 32 ~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
.+|++..+.|+.+.+-.+|+.+|.+..+++.+...|-|
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~ 80 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY 80 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 47899999999999999999999999999999899988
No 90
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=49.37 E-value=18 Score=31.30 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=33.7
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 33 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 33 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
.|++..+.|+.+.+..+|+.+|.+..++..+...|-|
T Consensus 20 ~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (102)
T 1v5o_A 20 TEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY 56 (102)
T ss_dssp CCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE
Confidence 4578889999999999999999999999999888877
No 91
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.28 E-value=5.5 Score=31.50 Aligned_cols=20 Identities=30% Similarity=0.712 Sum_probs=17.4
Q ss_pred ceEeCCCCCcCCcCcCCCCC
Q 003176 821 RTVTCTKCKGIGHNKLSCKE 840 (842)
Q Consensus 821 r~~~Cs~C~~~GHN~~tC~~ 840 (842)
+...|-+|++.||-.+.||.
T Consensus 6 r~~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 6 SGDRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp SCCCCSSSCCSSSCTTTCCS
T ss_pred CCCcccccCCCCcChhhCCC
Confidence 44679999999999999984
No 92
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=48.45 E-value=30 Score=31.21 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=33.4
Q ss_pred CceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 34 GEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 34 g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
|++..+.|+.+.+..+|+.+|++..++..+...|-|.
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 5667789999999999999999999999999999883
No 93
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=48.35 E-value=22 Score=30.60 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=31.9
Q ss_pred eEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 36 ANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 36 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
+--+.|+.+++-.+|+.||.+..|++++...|-|.
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~ 62 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 45578999999999999999999999999999885
No 94
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=47.40 E-value=7.8 Score=36.32 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=15.3
Q ss_pred eEeCCCCCcCCcCcCCCCCC
Q 003176 822 TVTCTKCKGIGHNKLSCKET 841 (842)
Q Consensus 822 ~~~Cs~C~~~GHN~~tC~~~ 841 (842)
...|-+|++.||-.+.||+.
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~ 138 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLK 138 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTT
T ss_pred CCcccccCCcCCEeccCcCC
Confidence 45788888888888888763
No 95
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=47.31 E-value=10 Score=32.89 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=34.2
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 33 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 33 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
+|++..+.|+.+.+-.+|+.+|++..|++.+...|-|
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 72 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY 72 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 8888889999999999999999999999988888877
No 96
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=46.83 E-value=20 Score=30.02 Aligned_cols=38 Identities=3% Similarity=-0.037 Sum_probs=33.2
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 33 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 33 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
|++.-=+.++.+++-.+|+.||.+..|++++.+.|-|.
T Consensus 13 ~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 13 RMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp SCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred CCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 44444478999999999999999999999999999985
No 97
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=46.81 E-value=11 Score=32.18 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=32.6
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 33 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 33 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
+|++.-|.|+.+.+..+|+.+|.+..+++.+...|-|
T Consensus 25 ~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~ 61 (95)
T 1v86_A 25 NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY 61 (95)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 5677789999999999999999999999988777765
No 98
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=46.24 E-value=7.7 Score=32.23 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=32.0
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecC
Q 003176 30 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLP 72 (842)
Q Consensus 30 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~ 72 (842)
+-..|-.| |.|+.+.++.+|..+|.+.++++....++++.-|
T Consensus 10 rs~~G~~R-i~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~ 51 (80)
T 2pjh_A 10 QSPDGVKR-ITATKRETAATFLKKVAKEFGFQNNGFSVYINRN 51 (80)
T ss_dssp ECSSEEEE-CCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCC
T ss_pred ECCCCCEE-EEcCCcChHHHHHHHHHHHcCCCCCcceEEecCC
Confidence 33456444 5699999999999999999998877666665554
No 99
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=46.22 E-value=32 Score=29.10 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=34.5
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHH---hCCCCcceEEEE
Q 003176 30 SYDGGEANAVAINPETHFGDLKLKLAEL---LNLEYKSLSVKY 69 (842)
Q Consensus 30 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~y 69 (842)
+..+|++..+.|+.+.+-.+|+.+|++. .|++.+...|-|
T Consensus 6 k~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~ 48 (95)
T 1uel_A 6 KTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY 48 (95)
T ss_dssp EETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE
T ss_pred EeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE
Confidence 4456888889999999999999999999 578888888887
No 100
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=46.17 E-value=7.6 Score=31.85 Aligned_cols=20 Identities=30% Similarity=0.760 Sum_probs=17.7
Q ss_pred ceEeCCCCCcCCcCcCCCCC
Q 003176 821 RTVTCTKCKGIGHNKLSCKE 840 (842)
Q Consensus 821 r~~~Cs~C~~~GHN~~tC~~ 840 (842)
+...|-+|++.||-.+.|+.
T Consensus 23 r~~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCSS
T ss_pred CCCcccccCCcCcCcccCCC
Confidence 44689999999999999995
No 101
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=46.08 E-value=37 Score=30.36 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=31.3
Q ss_pred eEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 36 ANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 36 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
..-+.|+.+++-.+|+.||.+..|++++...|-|.
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 44578999999999999999999999999888883
No 102
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=45.12 E-value=31 Score=29.26 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=47.1
Q ss_pred ecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCceeEEEEEeccCC
Q 003176 32 DGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIGTSG 109 (842)
Q Consensus 32 ~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~~~~~v~~~~~~~ 109 (842)
..|+.--+.|.++.+++.|+.+.++..|++.+++.|.|- + +.|-.=.+.+||. || +-..++|++-..+|
T Consensus 13 ~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~Fd--G--~~l~~~~Tp~dl~--me---dgD~Idv~~~q~gg 81 (91)
T 2io0_B 13 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD--G--QPINETDTPAQLE--ME---DEDTIDVFQQQTGG 81 (91)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEET--T--EECCTTCCTTTTT--CC---TTEEEEEEECCCCC
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC--C--EEcCCCCCHHHcC--CC---CCCEEEEEEeccCC
Confidence 346677889999999999999999999999999888882 1 3332223444442 11 22357777655443
No 103
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=44.78 E-value=28 Score=29.96 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=34.1
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 30 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 30 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
+..+|. ..+.|+.+.+..+|+.+|++..+++.+...|-|.
T Consensus 28 k~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 67 (100)
T 1yqb_A 28 KTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 67 (100)
T ss_dssp ECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 344565 4789999999999999999999999998888883
No 104
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.73 E-value=27 Score=30.26 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=37.4
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
+.-.+|++..|.|+.+.+-.+|+.+|++..|++.+...|.|.
T Consensus 33 VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 33 CNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp EECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 445567888899999999999999999999999999999886
No 105
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=44.68 E-value=30 Score=32.83 Aligned_cols=42 Identities=10% Similarity=0.202 Sum_probs=37.6
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
++..+|++..+.|+.+.+-.+|+.+|.+..++..+...|-|.
T Consensus 25 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~ 66 (172)
T 3u30_A 25 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 66 (172)
T ss_dssp EEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 455688999999999999999999999999999988888884
No 106
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=50.02 E-value=4.8 Score=32.55 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=34.6
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 30 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 30 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
+..+|++..+.|+.+.+-.+|+.+|++..|++.+...|-|
T Consensus 6 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 45 (76)
T 3b1l_X 6 RFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIF 45 (76)
Confidence 3456888889999999999999999999999888777766
No 107
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=43.53 E-value=33 Score=30.07 Aligned_cols=37 Identities=24% Similarity=0.211 Sum_probs=34.5
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 33 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 33 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
.|++.-+.|.++..++-|+.+.|+..|++.+++.|.|
T Consensus 39 ~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F 75 (106)
T 2eke_C 39 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY 75 (106)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE
Confidence 4888889999999999999999999999999888888
No 108
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=43.41 E-value=24 Score=29.93 Aligned_cols=36 Identities=8% Similarity=0.241 Sum_probs=32.6
Q ss_pred CceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 34 GEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 34 g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
|++..+.|+.+.+-.+|+.+|++..++..+...|-|
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 61 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF 61 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 667788999999999999999999999988888877
No 109
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=42.98 E-value=33 Score=31.45 Aligned_cols=41 Identities=10% Similarity=0.192 Sum_probs=36.1
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 30 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 30 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
+..+|++.-+.|+.+.+..+|+.+|++..+++.+...|-|.
T Consensus 6 k~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~ 46 (152)
T 3b08_A 6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (152)
T ss_dssp EETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEEC
Confidence 34567888899999999999999999999999988888883
No 110
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=42.90 E-value=66 Score=29.46 Aligned_cols=66 Identities=21% Similarity=0.194 Sum_probs=47.1
Q ss_pred CCeEEeccccccccccceEEEEEEecCCCCeEEEEEEEecCCChhhHHHHHHHHHHhhcCCCcEEEEecCchhHHH
Q 003176 464 RPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLME 539 (842)
Q Consensus 464 ~~vl~iD~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~Et~es~~WfL~~lk~~~~~~~p~~iisD~~~~l~~ 539 (842)
..++.+|.|+..++ +.++.+|...+.. +++.+ .+++.+...-+|..+....+ +..|.||+.....+
T Consensus 9 ~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~---~~~i~sD~G~~f~s 74 (163)
T 3l3u_A 9 PGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP---VKTVHTDNGSNFTS 74 (163)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC---CCEEEECCCGGGGS
T ss_pred CCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC---CcEEeecChHhhhh
Confidence 35889999998653 4667778766654 66655 56677777777777666655 36899999987643
No 111
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=42.39 E-value=44 Score=31.08 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=36.6
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEE-E
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVK-Y 69 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-y 69 (842)
++..+|.+..+.|+.+.+-.+|+.+|.+..|++.....|- |
T Consensus 7 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~ 48 (159)
T 3rt3_B 7 VKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVH 48 (159)
T ss_dssp EEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred EEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEc
Confidence 3456899999999999999999999999999999888887 6
No 112
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=41.26 E-value=37 Score=28.80 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=33.8
Q ss_pred ecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 32 DGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 32 ~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
..|+.--+.|.++.+++.|+.+.++..|++.+++.|.|
T Consensus 25 ~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f 62 (93)
T 2d07_B 25 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 62 (93)
T ss_dssp TTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE
Confidence 34666778999999999999999999999999888888
No 113
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=41.04 E-value=37 Score=28.94 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=34.2
Q ss_pred ecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 32 DGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 32 ~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
..|++--+.|.++.+++.++.+.++..+++.+.+.|.|
T Consensus 15 ~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F 52 (94)
T 2io1_B 15 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 52 (94)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE
Confidence 34677788999999999999999999999999988888
No 114
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=40.71 E-value=31 Score=29.97 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=34.4
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 33 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 33 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
||.+.-+.|+.+.+=.+|+.+|++..|++.+...|-|.
T Consensus 28 ~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~ 65 (100)
T 1wju_A 28 KDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN 65 (100)
T ss_dssp CSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC
Confidence 47788999999999999999999999999888888874
No 115
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=40.37 E-value=10 Score=35.54 Aligned_cols=19 Identities=32% Similarity=0.753 Sum_probs=17.5
Q ss_pred eEeCCCCCcCCcCcCCCCC
Q 003176 822 TVTCTKCKGIGHNKLSCKE 840 (842)
Q Consensus 822 ~~~Cs~C~~~GHN~~tC~~ 840 (842)
..+|-+|++.||-.+.||.
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCS
T ss_pred CCcccEeCCccchhhhCCC
Confidence 5689999999999999987
No 116
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=39.00 E-value=61 Score=30.58 Aligned_cols=41 Identities=10% Similarity=0.192 Sum_probs=36.7
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 30 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 30 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
+-.+|++..+.|+.+.+-.+|+.+|.+..|++++...|.|.
T Consensus 102 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~ 142 (172)
T 3u30_A 102 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 142 (172)
T ss_dssp EESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred ecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC
Confidence 44678999999999999999999999999999988888873
No 117
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=38.92 E-value=90 Score=30.26 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=46.1
Q ss_pred CeEEeccccccccccceEEEEEEecCCCCeEEEEEEEecCCChhhHHHHHHHHHHhhcCCCcEEEEecCchhHHHH
Q 003176 465 PLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLMES 540 (842)
Q Consensus 465 ~vl~iD~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~Et~es~~WfL~~lk~~~~~~~p~~iisD~~~~l~~A 540 (842)
.++.+|.|+..++ ++++.+|...+.. +++. +.+++.+...-+|..+....| |..|.||+.......
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~-~~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAER-VKGETGQEFRVQTMKWYAMFA---PKSLQSDNGPAFVAE 126 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEE-ESCCCHHHHHHHHHHHHHHHC---CCEEEECCCHHHHSH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEE-eCCCCHHHHHHHHHHHHHHhC---CcEEEeCCCchhhhH
Confidence 5778998876543 5566777776655 5555 456666666667766666665 889999999887643
No 118
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.86 E-value=43 Score=28.35 Aligned_cols=35 Identities=9% Similarity=0.180 Sum_probs=31.1
Q ss_pred eEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 36 ANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 36 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
..-+.|+.+++-.+|+.||.+..|++.+...|-|.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 45578999999999999999999999998888874
No 119
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=38.47 E-value=40 Score=31.36 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=36.5
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 30 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 30 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
+..+|++..+.|+.+.+-.+|+.+|.+..|++++...|-|
T Consensus 87 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~ 126 (159)
T 3rt3_B 87 RNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 126 (159)
T ss_dssp ECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred ECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE
Confidence 4457899999999999999999999999999999888888
No 120
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=38.38 E-value=31 Score=30.20 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=34.6
Q ss_pred cCceEEEEeCC-CCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 33 GGEANAVAINP-ETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 33 gg~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
+|++.-+.|+. +.+-.+|+.+|.+..+++.+...|-|.
T Consensus 39 ~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~ 77 (111)
T 1we6_A 39 DGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK 77 (111)
T ss_dssp SSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS
T ss_pred CCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 67888899998 999999999999999999998888883
No 121
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=38.22 E-value=6.7 Score=30.56 Aligned_cols=19 Identities=37% Similarity=0.723 Sum_probs=0.0
Q ss_pred EeCCCCCcCCcCcCCCCCC
Q 003176 823 VTCTKCKGIGHNKLSCKET 841 (842)
Q Consensus 823 ~~Cs~C~~~GHN~~tC~~~ 841 (842)
..|-+|++.||-.+.||..
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~ 20 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEH 20 (60)
T ss_dssp -------------------
T ss_pred CccccCCCCCcCHhhCcCC
Confidence 3699999999999999863
No 122
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=36.99 E-value=47 Score=31.57 Aligned_cols=42 Identities=7% Similarity=0.145 Sum_probs=37.3
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
++...|++..+.|+.+.+-.+|+.+|.+..+++++...|-|.
T Consensus 5 Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (169)
T 3l0w_B 5 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (169)
T ss_dssp EEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred EEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 345678999999999999999999999999999998888873
No 123
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=36.69 E-value=92 Score=30.89 Aligned_cols=71 Identities=10% Similarity=-0.061 Sum_probs=51.3
Q ss_pred CCeEEeccccccccccceEEEEEEecCCCCeEEEEEEEecCCChhhHHHHHHHHHHhhcCCCcEEEEecCchhHHH
Q 003176 464 RPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLME 539 (842)
Q Consensus 464 ~~vl~iD~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~Et~es~~WfL~~lk~~~~~~~p~~iisD~~~~l~~ 539 (842)
..++.+|.|+.... ++..+.++.+|...+ +.+++.+- +++.+.-.-+|+.+....+ .|.+|.||+.....+
T Consensus 10 ~~~w~~D~~~~~~~-~g~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s 80 (238)
T 1c0m_A 10 LQIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQHG-RVTSVAVQHHWATAIAVLG--RPKAIKTDNGSCFTS 80 (238)
T ss_dssp TSEEEEEEEECGGG-CSSCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHC--CCSEEEECSCHHHHS
T ss_pred CCEEEEeecccccc-CCCEEEEEEEECCCC-CEEEEEcc-CCCHHHHHHHHHHHHHHhC--CCcEEEECCCCcccc
Confidence 35789999987653 334556667776554 55677765 8888888887877777766 377999999988754
No 124
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=36.23 E-value=1.1e+02 Score=28.03 Aligned_cols=71 Identities=10% Similarity=-0.066 Sum_probs=49.4
Q ss_pred CCeEEeccccccccccceEEEEEEecCCCCeEEEEEEEecCCChhhHHHHHHHHHHhhcCCCcEEEEecCchhHHH
Q 003176 464 RPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLME 539 (842)
Q Consensus 464 ~~vl~iD~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~Et~es~~WfL~~lk~~~~~~~p~~iisD~~~~l~~ 539 (842)
..++.+|-|+.... +|..+.++.+|...+ +++++.+- +.+.+.-.-+|+.+....+ .|..|.||+.....+
T Consensus 11 ~~~~~~D~~~~~~~-~g~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 11 LQIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQHG-RVTSVAAQHHWATAIAVLG--RPKAIKTDNGSCFTS 81 (162)
T ss_dssp CCEEEEEEEECGGG-TTSCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHC--CCSEEECCSCHHHHS
T ss_pred CCEEEeeeeecccC-CCCEEEEEEEEcCCC-eEEEEECC-CccHHHHHHHHHHHHHHHC--CCeEEEeCCchhhhh
Confidence 35789999987643 344566677887655 44667665 6777776667776666655 367999999988754
No 125
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=35.50 E-value=14 Score=31.01 Aligned_cols=20 Identities=45% Similarity=0.871 Sum_probs=18.0
Q ss_pred eEeCCCCCcCCcCcCCCCCC
Q 003176 822 TVTCTKCKGIGHNKLSCKET 841 (842)
Q Consensus 822 ~~~Cs~C~~~GHN~~tC~~~ 841 (842)
.+.|-+|++.||-.+.||..
T Consensus 46 ~~~CYnCG~~GH~~rdC~~~ 65 (83)
T 3nyb_B 46 TIYCYNCGGKGHFGDDCKEK 65 (83)
T ss_dssp CCBCSSSSCBSSCGGGCSSC
T ss_pred CCeecccCCCCcCcccCCcc
Confidence 46899999999999999974
No 126
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=35.24 E-value=45 Score=29.42 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=52.3
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCceeEEEEEeccC
Q 003176 29 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIGTS 108 (842)
Q Consensus 29 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~~~~~v~~~~~~ 108 (842)
+.-..|+.-.+.|.++.+++.|+.+.|+..+++.+++.|.| +-+.|-.=.+.+||. |+ +-..++|++-..+
T Consensus 31 Vk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF----dG~~L~~~~Tp~dl~--mE---DgD~Idv~~~q~G 101 (110)
T 2k8h_A 31 VVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF----DGTPIDETKTPEELG--ME---DDDVIDAMVEQTG 101 (110)
T ss_dssp EEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES----SSCBCCSSSHHHHHH--CS---SEEEEEEECCCCC
T ss_pred EECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE----CCEEcCCCCCHHHcC--CC---CCCEEEEEEcccC
Confidence 33446788889999999999999999999999999888877 224444444555553 22 2346888877766
Q ss_pred CCc
Q 003176 109 GFD 111 (842)
Q Consensus 109 ~~~ 111 (842)
|+.
T Consensus 102 g~~ 104 (110)
T 2k8h_A 102 GLE 104 (110)
T ss_dssp C--
T ss_pred ccc
Confidence 554
No 127
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=34.11 E-value=38 Score=29.51 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=34.1
Q ss_pred ecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 32 DGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 32 ~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
..|+.--+.|.++.+++.|+.+.|+..+++.+.+.|.|
T Consensus 32 ~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~F 69 (104)
T 1wz0_A 32 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 69 (104)
T ss_dssp SSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEES
T ss_pred CCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEE
Confidence 45777789999999999999999999999998888877
No 128
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=32.86 E-value=62 Score=27.04 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=30.4
Q ss_pred eEEEEeCCCCChHHHHHHHHHHh--CCCCcceEEEEe
Q 003176 36 ANAVAINPETHFGDLKLKLAELL--NLEYKSLSVKYF 70 (842)
Q Consensus 36 ~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~y~ 70 (842)
+--|.|+.+.+-.+|+.+|++.. +++.+...|-|.
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~ 57 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS 57 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC
Confidence 55667779999999999999999 998888888883
No 129
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=32.51 E-value=29 Score=21.63 Aligned_cols=19 Identities=32% Similarity=0.628 Sum_probs=17.0
Q ss_pred CCCceeCCHHHHHHHHHHH
Q 003176 276 GVGQEFKSVIEFRDALQRF 294 (842)
Q Consensus 276 ~vG~~F~s~ee~k~ai~~y 294 (842)
..|.+|.+.+|++++|..|
T Consensus 7 ykgrtfrnekelrdfiekf 25 (28)
T 1fme_A 7 YKGRTFRNEKELRDFIEKF 25 (28)
T ss_dssp SSSCEECCHHHHHHHHHHC
T ss_pred hcccccccHHHHHHHHHHh
Confidence 5799999999999999765
No 130
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=31.86 E-value=30 Score=30.69 Aligned_cols=27 Identities=41% Similarity=0.684 Sum_probs=17.9
Q ss_pred CCCCCCCCCCcccccccCCCccceEeCCCCCc
Q 003176 799 PSSTRTPTTHQKRRRKILGIEHRTVTCTKCKG 830 (842)
Q Consensus 799 P~~~r~~GRPKkkR~~~~~~~kr~~~Cs~C~~ 830 (842)
|.++|-.||-|+-|- .-+.++|.+|+.
T Consensus 2 ~kKRrN~GR~KkgrG-----hv~~V~C~nCgr 28 (119)
T 2xzm_5 2 PVKRRNAGRSQKNRG-----HTRTVPCTNCGR 28 (119)
T ss_dssp CCCCSSTTCCCCSSS-----CCCEEECTTTCC
T ss_pred CcccccCCCCCCCCC-----CCccEeeCCccc
Confidence 455666777776542 135678999986
No 131
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=31.61 E-value=56 Score=28.33 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=34.8
Q ss_pred CeEeecC---ceEEEEeCC---------CCChHHHHHHHHHHh--CCCCcc-eEEEE
Q 003176 28 SLSYDGG---EANAVAINP---------ETHFGDLKLKLAELL--NLEYKS-LSVKY 69 (842)
Q Consensus 28 ~~~y~gg---~~~~~~v~~---------~~~~~~~~~~~~~~~--~~~~~~-~~~~y 69 (842)
.++..+| ++..|.|+. +.+-.+|+.+|.+.. ++..+. ..|-|
T Consensus 16 ~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~ 72 (107)
T 1x1m_A 16 AVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIY 72 (107)
T ss_dssp EEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEE
T ss_pred EEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEE
Confidence 3556678 788888554 599999999999999 999888 88877
No 132
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=31.12 E-value=20 Score=32.25 Aligned_cols=19 Identities=42% Similarity=0.786 Sum_probs=17.1
Q ss_pred EeCCCCCcCCcCcCCCCCC
Q 003176 823 VTCTKCKGIGHNKLSCKET 841 (842)
Q Consensus 823 ~~Cs~C~~~GHN~~tC~~~ 841 (842)
..|-+|++.||..+.||..
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~~ 83 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPSI 83 (124)
T ss_dssp CSSSSSCSSCCCTTTCCCS
T ss_pred ccCCCCCcCCcchhhCCCc
Confidence 5799999999999999974
No 133
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=30.69 E-value=44 Score=29.88 Aligned_cols=20 Identities=45% Similarity=0.880 Sum_probs=18.1
Q ss_pred ceEeCCCCCcCCcCcCCCCC
Q 003176 821 RTVTCTKCKGIGHNKLSCKE 840 (842)
Q Consensus 821 r~~~Cs~C~~~GHN~~tC~~ 840 (842)
..+.|-+|++.||..+.||.
T Consensus 104 ~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 104 HTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCCTTTTSSSCTTTTTSCC
T ss_pred CCCCcCCCCCCCcCcccCcC
Confidence 45799999999999999996
No 134
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=29.90 E-value=93 Score=32.64 Aligned_cols=72 Identities=13% Similarity=-0.086 Sum_probs=50.7
Q ss_pred CCeEEeccccccccc---cc---eEEEEEEecCCCCeEEEEEEEecCCChhhHHHHHHHHHHhhcCCCcE--EEEecCch
Q 003176 464 RPLLFLDSTSLRSKY---HE---ILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSI--TFVSDKQK 535 (842)
Q Consensus 464 ~~vl~iD~T~~~~~y---~~---~Ll~a~g~D~~~~~~plafalv~~Et~es~~WfL~~lk~~~~~~~p~--~iisD~~~ 535 (842)
..++.+|+|++.... .| ...+.+.+|.... .++|+.+...|+.+...-.|.......+ .|. .|.+|+..
T Consensus 16 ~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR-~ivg~~~~~~~~~~~v~~aL~~a~~~~G--~P~~~~i~sDnG~ 92 (327)
T 1bco_A 16 MQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTR-KILGWRCDVSENIDSIRLSFMDVVTRYG--IPEDFHITIDNTR 92 (327)
T ss_dssp TTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTC-CEEEEEEESSCCHHHHHHHHHHHHHHHC--EESSCEEECCCTT
T ss_pred CcEEEecCCEEEEEEECCCCccceeEEEEEEECCCC-cEEEEEEECCCCHHHHHHHHHHHHHhcC--CCCCcEEEeeCch
Confidence 458999998765421 12 3455666776555 4589999999988888777777666554 355 99999987
Q ss_pred hHH
Q 003176 536 GLM 538 (842)
Q Consensus 536 ~l~ 538 (842)
...
T Consensus 93 ~f~ 95 (327)
T 1bco_A 93 GAA 95 (327)
T ss_dssp STT
T ss_pred hhc
Confidence 654
No 135
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=29.44 E-value=75 Score=28.25 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=33.3
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 33 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 33 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
.|..--+.|.++..++-|+...|+..|++.+++.|.|
T Consensus 49 dg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF 85 (115)
T 3kyd_D 49 DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 85 (115)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE
T ss_pred CCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEE
Confidence 4666678899999999999999999999999988888
No 136
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=27.99 E-value=39 Score=30.03 Aligned_cols=27 Identities=22% Similarity=0.521 Sum_probs=17.9
Q ss_pred CCCCCCCCCCcccccccCCCccceEeCCCCCc
Q 003176 799 PSSTRTPTTHQKRRRKILGIEHRTVTCTKCKG 830 (842)
Q Consensus 799 P~~~r~~GRPKkkR~~~~~~~kr~~~Cs~C~~ 830 (842)
|.++|-.||-|+-|- .-..++|.+|+.
T Consensus 2 ~kKRrN~GR~KkgrG-----hv~~V~C~nCgr 28 (119)
T 3u5c_a 2 PKKRASNGRNKKGRG-----HVKPVRCVNCSK 28 (119)
T ss_dssp CCCCSSTTSCCCSCS-----CCCEEECTTTCC
T ss_pred CcccccCCCCCCCCC-----CCccEeeccccc
Confidence 456667777776542 124679999985
No 137
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=27.97 E-value=97 Score=26.57 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=40.5
Q ss_pred ecC-ceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHH
Q 003176 32 DGG-EANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDL 87 (842)
Q Consensus 32 ~gg-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl 87 (842)
..| +.-.+.|.|+..|+-|+..-|+..+++.+++.|.| +-+.|-.=.+.+||
T Consensus 33 ~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F----DG~rI~~~~TP~dL 85 (97)
T 2jxx_A 33 KEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF----DGTKLSGRELPADL 85 (97)
T ss_dssp SSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE----TTEECCSCSCHHHH
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE----CCEEcCCCCCHHHc
Confidence 345 45678999999999999999999999999888888 22455555566666
No 138
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=27.97 E-value=33 Score=29.93 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=28.5
Q ss_pred cCceEEEEeC-CCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 33 GGEANAVAIN-PETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 33 gg~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
.|.. .|.|+ .++++.+|+.||.+.++++.....|.|
T Consensus 16 ~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~ 52 (107)
T 1wf9_A 16 DGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLST 52 (107)
T ss_dssp SCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS
T ss_pred CCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEE
Confidence 4544 46799 999999999999999998877655543
No 139
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.34 E-value=58 Score=27.32 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=29.1
Q ss_pred ecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 32 DGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 32 ~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
.+|.+..+.|+.+.+-.+|+.+|++.. .+...|-|
T Consensus 15 ~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~ 49 (95)
T 1wia_A 15 LNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIY 49 (95)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEE
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEE
Confidence 457778899999999999999999887 45667777
No 140
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=25.87 E-value=1.4e+02 Score=28.04 Aligned_cols=67 Identities=22% Similarity=0.220 Sum_probs=41.4
Q ss_pred CCCeEEeccccccccccceEEEEEEecCCCCeEEEEEEEecCCChhhHHHHHHHHHHhhcCCCcEEEEecCchhHHH
Q 003176 463 CRPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLME 539 (842)
Q Consensus 463 ~~~vl~iD~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~Et~es~~WfL~~lk~~~~~~~p~~iisD~~~~l~~ 539 (842)
-..++.+|.++..++| ++ +.+|...+.. +++.+ .+++.+...-++..+....+ +.+|.+|+.....+
T Consensus 28 p~~~w~~D~~~~~g~~---~l--~~vD~~Sr~~-~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~i~sDnG~ef~s 94 (183)
T 3av9_A 28 SPGIWQLDCTHLEGKV---IL--VAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP---VKTVHTDNGSNFTS 94 (183)
T ss_dssp CTTEEEEEEEEETTEE---EE--EEEETTTTEE-EEEEE-SSCCHHHHHHHHHHHHHHSC---CCEEECSSHHHHHC
T ss_pred CCCEEEEeccccCCcE---EE--EEEECCCCCE-EEEEe-CCccchHHHHHHHHHHHHcC---CcEEEecCchhcch
Confidence 3458899999884332 33 4447665554 66655 45555555555554544443 38999999887754
No 141
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=25.77 E-value=21 Score=30.90 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=18.4
Q ss_pred ceEeCCCCCcCC---cCcCCCCCC
Q 003176 821 RTVTCTKCKGIG---HNKLSCKET 841 (842)
Q Consensus 821 r~~~Cs~C~~~G---HN~~tC~~~ 841 (842)
|.+.|..|+..| |..+-||..
T Consensus 70 R~Y~CpiCGATGd~AHT~kYCP~~ 93 (106)
T 3alr_A 70 RQYKCPLCGATGAKAHTKRFCPMV 93 (106)
T ss_dssp GGCCCTTTCCCGGGCCCGGGCTTC
T ss_pred ccccCCCCCCcCCcccceecCCCC
Confidence 678999999998 999999963
No 142
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=25.37 E-value=15 Score=33.30 Aligned_cols=40 Identities=8% Similarity=0.156 Sum_probs=0.0
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 30 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 30 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
+..+|++..+.|+.+.|-.+|+.+|++..+++++...|-|
T Consensus 6 k~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 45 (128)
T 3u5e_m 6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45 (128)
T ss_dssp ----------------------------------------
T ss_pred EeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEE
Confidence 4457889999999999999999999999999888777766
No 143
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=25.22 E-value=65 Score=29.25 Aligned_cols=37 Identities=3% Similarity=0.110 Sum_probs=31.0
Q ss_pred ceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEec
Q 003176 35 EANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFL 71 (842)
Q Consensus 35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l 71 (842)
..+.+-|.+.++|.+|++.+++.+|++.+.+.|=+-.
T Consensus 56 ~~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~ 92 (130)
T 2kvr_A 56 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQ 92 (130)
T ss_dssp SCEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECC
T ss_pred CcceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEee
Confidence 3567899999999999999999999988776666543
No 144
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=24.86 E-value=2.2e+02 Score=31.81 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=48.2
Q ss_pred eEEEEEEEec--CCChhhHHHHHHHHHHhhcCCC--cEEEEecCchhHHHHHHhhcccCceEecHHHHHHHHHhh
Q 003176 494 IFPVAFAIVD--TENDDSWNWFLEELRSAVSSSR--SITFVSDKQKGLMESVLKIFENAHHGYSIYHLLDNFMKN 564 (842)
Q Consensus 494 ~~plafalv~--~Et~es~~WfL~~lk~~~~~~~--p~~iisD~~~~l~~AI~~vfP~a~h~~C~~Hi~~N~~~~ 564 (842)
..+++|.-+. ..+.++..-.+..+.+..+... -+.++||....+..|++.. .|..|.-|++.-+.+.
T Consensus 131 ~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~vtDnasn~~~~~~~~----~~i~C~~H~lnLi~~~ 201 (534)
T 2bw3_A 131 DLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKSLANN----IRINCSSHLLSNVLEN 201 (534)
T ss_dssp EEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHHHHHTTTS----EEEECHHHHHHHHHHH
T ss_pred EEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeEECCCHHHHHHHHhcC----cccccHHHHHHHHHHH
Confidence 4567776666 3566776666666666655443 6779999999988887653 5899999998877654
No 145
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=24.63 E-value=46 Score=29.14 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=24.7
Q ss_pred CCCCCCCceeCCHHHHHHHHHHHHHhcceeEEEEee
Q 003176 272 DSITGVGQEFKSVIEFRDALQRFSIAHRFRYKFKKN 307 (842)
Q Consensus 272 ~~~~~vG~~F~s~ee~k~ai~~yAi~~gf~~r~~ks 307 (842)
|+.-.+...|+|+|++. .||.++|..|.+...
T Consensus 49 D~~~qv~L~F~skE~Ai----ayAek~G~~y~V~ep 80 (106)
T 2jya_A 49 DMKQQVKLTFETQEQAE----AYAQRKGIEYRVILP 80 (106)
T ss_dssp CSEEEEEEEESSHHHHH----HHHHHHTCEEEECCC
T ss_pred CccccceEecCCHHHHH----HHHHHcCCEEEEeCC
Confidence 33345789999998765 689999999988644
No 146
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=24.12 E-value=1.8e+02 Score=27.45 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=45.8
Q ss_pred CCeEEecc-ccccccccceEEEEEEecCCCCeEEEEEEEecCCChhhHHHHHHHHHHhhcCCCcEEEEecCchhHHH
Q 003176 464 RPLLFLDS-TSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLME 539 (842)
Q Consensus 464 ~~vl~iD~-T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~Et~es~~WfL~~lk~~~~~~~p~~iisD~~~~l~~ 539 (842)
..++.+|- ++.... +|..+.++.+|...+. .+++.+ .+.+.+...-+|+ ..+....|..|.||+.....+
T Consensus 13 ~~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~-~~~~~~-~~~~~~~~~~~l~---~~~~~g~p~~i~sDnG~~f~s 83 (200)
T 2x78_A 13 FDKFFIDYIGPLPPS-QGYLYVLVVVDGMTGF-TWLYPT-KAPSTSATVKSLN---VLTSIAIPRVIHSDQGAAFTS 83 (200)
T ss_dssp TSEEEEEEECCCSCB-TTBCEEEEEEETTTCC-EEEEEE-SSSCHHHHHHHHH---HHTTTCCCSEEEECSCHHHHS
T ss_pred ccEEEEEEeCCCccC-CCCeEEEEEEeCCCCc-EEEEEC-CCCCHHHHHHHHH---HHHHhCCCcEEEecCCcceeh
Confidence 35788886 555443 4566777888876554 456666 6666666555554 334335688999999987654
No 147
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.32 E-value=72 Score=27.51 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=32.4
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 33 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 33 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
+|++..|.|+.+.+-.+|+.+|.+..|+.+..-.|-|
T Consensus 17 ~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~ 53 (100)
T 2dzm_A 17 RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKG 53 (100)
T ss_dssp SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEEC
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEc
Confidence 5778889999999999999999999999888777743
No 148
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=23.17 E-value=1.8e+02 Score=26.13 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=40.3
Q ss_pred CeEEeccccccccccceEEEEEEecCCCCeEEEEEEEecCCChhhHHHHHHHHHHhhcCCCcEEEEecCchhH
Q 003176 465 PLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGL 537 (842)
Q Consensus 465 ~vl~iD~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~Et~es~~WfL~~lk~~~~~~~p~~iisD~~~~l 537 (842)
.++.+|.++. ++. +.++.+|..-+ +.+++.+ .+.+.+.+.-++..+.... .|.+|.+|+....
T Consensus 10 ~~w~~D~~~~----~g~-~~l~~iD~~Sr-~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~i~sDnG~~f 72 (164)
T 1c6v_A 10 GTWQMDCTHL----EGK-IVIVAVHVASG-FIEAEVI-PQETGRQTALFLLKLAGRW---PITHLHTDNGANF 72 (164)
T ss_dssp TEEEEEEEEE----TTE-EEEEEECTTSC-CEEEEEC-SSCSHHHHHHHHHHHHTTS---CCCEEECCCCSST
T ss_pred CEEEEeeccc----CCE-EEEEEEEccCC-EEEEEEc-CCCchHHHHHHHHHHHHhc---CCCEEEeCCchhh
Confidence 4788999888 233 23344887665 4456644 4566666666655544444 3789999998764
No 149
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=23.17 E-value=92 Score=26.39 Aligned_cols=74 Identities=11% Similarity=0.167 Sum_probs=40.4
Q ss_pred eEeec--CceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCceeEEEEEec
Q 003176 29 LSYDG--GEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIG 106 (842)
Q Consensus 29 ~~y~g--g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~~~~~v~~~~ 106 (842)
|+|+| |.||+|-+. ..|.+..++..++||+. +.-.+.-.+-.+ ..+.-+++| |++.+-.-.-...+-|+++.+
T Consensus 3 LrFIacnGQTRaVq~~--~~y~~~L~~ALkKF~le-dpskw~Vcvtqs-sr~~~it~e-~f~~icr~~srPEReRLIl~~ 77 (110)
T 1k8r_B 3 LRFIACNGQTRAVQSR--GDYQKTLAIALKKFSLE-DASKFIVCVSQS-SRIKLITEE-EFKQICFNSSSPERDRLIIVP 77 (110)
T ss_dssp EEEECSTTCEEEEECC--SCHHHHHHHHHHHHTCC-CTTSEEEEEECS-SSEEECCCC--------------CCCEEEEE
T ss_pred eEEeecCCceEEeeeh--hhHHHHHHHHHHHcCCC-ChhHeEEEEecC-ceEEEecHh-HHHHHHhCCCCcchheeEEec
Confidence 56665 899988765 45778889999999984 443444444444 666666665 444444333334445555555
Q ss_pred c
Q 003176 107 T 107 (842)
Q Consensus 107 ~ 107 (842)
.
T Consensus 78 K 78 (110)
T 1k8r_B 78 K 78 (110)
T ss_dssp S
T ss_pred C
Confidence 4
No 150
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=22.92 E-value=2e+02 Score=28.25 Aligned_cols=60 Identities=7% Similarity=0.153 Sum_probs=38.9
Q ss_pred ccccccceEEEEEEecCCCCeEEEEEEEec---CCChhhHHHHHHHHHHhh-------cCCCcEEEEecCchh
Q 003176 474 LRSKYHEILLTATALDGDDCIFPVAFAIVD---TENDDSWNWFLEELRSAV-------SSSRSITFVSDKQKG 536 (842)
Q Consensus 474 ~~~~y~~~Ll~a~g~D~~~~~~plafalv~---~Et~es~~WfL~~lk~~~-------~~~~p~~iisD~~~~ 536 (842)
.++++++.+++.++.+++|.+ ++.+++ .=|.+.|.-+|+.+...+ ......+|+-|..+.
T Consensus 65 ~~~~~~~~vmv~~~~s~~G~~---~~~~l~~~~tinse~Y~~~l~~l~~~l~~~~~~~~~~~~~i~~~Dna~~ 134 (226)
T 3f2k_A 65 KPILHPKKVMVTIWWSAAGLI---HYSFLNPGETITSEKYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARP 134 (226)
T ss_dssp ----CCCEEEEEEEEETTEEE---EEEECCTTCCCSHHHHHHHHHHHHHHHHHHTC----CCCCEEECCCCHH
T ss_pred ccccCCcceEEEEEeecCCcE---EEEEecCCcccCHHHHHHHHHHHHHHHhhhhhHhhccCCcEEEeCCCcc
Confidence 456677889999999988865 445554 567888988887765443 123467888998653
No 151
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=22.84 E-value=67 Score=25.87 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecC
Q 003176 47 FGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICN 83 (842)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~ 83 (842)
|.-.+..|-++|| -|||||.||++++
T Consensus 30 FQ~~Mq~lieKYn-----------~PFeD~plV~M~T 55 (81)
T 3r45_C 30 FQRRMQRLIEKYN-----------QPFEDTPVVQMAT 55 (81)
T ss_dssp HHHHHHHHHHHHC-----------SCCTTSCEEBTTT
T ss_pred HHHHHHHHHHHcC-----------CCCCCCceeeeee
Confidence 5555566666655 7999999999875
No 152
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=22.79 E-value=1.2e+02 Score=26.97 Aligned_cols=41 Identities=10% Similarity=-0.022 Sum_probs=35.3
Q ss_pred eEeecCce-EEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003176 29 LSYDGGEA-NAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 69 (842)
Q Consensus 29 ~~y~gg~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 69 (842)
|+-.+|.+ ..+.|..+.+-.+|+.+|.+..|+..+.-.|-|
T Consensus 5 l~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~ 46 (118)
T 2fnj_B 5 LMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYK 46 (118)
T ss_dssp EEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEE
Confidence 45567764 678999999999999999999999998888876
No 153
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=22.54 E-value=18 Score=35.24 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=0.0
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 30 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 30 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
+...|++..|.|+.+.|-.+|+.+|.+..+++++...|-|.
T Consensus 6 KtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~ 46 (189)
T 2xzm_9 6 KTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNN 46 (189)
T ss_dssp -----------------------------------------
T ss_pred EcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEec
Confidence 34568999999999999999999999999999887777773
No 154
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=22.02 E-value=1.5e+02 Score=27.92 Aligned_cols=62 Identities=13% Similarity=0.282 Sum_probs=44.8
Q ss_pred eEEeccccccccccceEEEEEEecCCCCeEEEEEEEecCCChhhHHHHHHHHHHhhcC-CCcEEEEecCchhHHHHHHhh
Q 003176 466 LLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSS-SRSITFVSDKQKGLMESVLKI 544 (842)
Q Consensus 466 vl~iD~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~Et~es~~WfL~~lk~~~~~-~~p~~iisD~~~~l~~AI~~v 544 (842)
|+|-|+...++.|+- |-|-. +..+.|.-+-|.+...... .-|-.|+.|+.+|-.+|+.+|
T Consensus 38 VVf~~g~p~K~~YRr------------------f~I~~-~g~DDya~M~Evl~RR~~r~~~PDLilIDGGkgQl~aA~~v 98 (159)
T 2nrr_A 38 VVFEDGFPKKGDYRR------------------YKIEQ-DHPDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEA 98 (159)
T ss_dssp EEEETTEECGGGCEE------------------EEC------CHHHHHHHHHHHHHTTSCCCSEEEESSCHHHHHHHHHH
T ss_pred EEEeCCccChhhCce------------------eecCC-CCCCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHH
Confidence 688899999988875 22212 2247788777777777543 458899999999999999988
Q ss_pred cc
Q 003176 545 FE 546 (842)
Q Consensus 545 fP 546 (842)
+-
T Consensus 99 l~ 100 (159)
T 2nrr_A 99 LK 100 (159)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 155
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=21.82 E-value=1.2e+02 Score=25.92 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=28.8
Q ss_pred ecCc--eEEEEeCCCCChHHHHHHHHHHh-CCC-CcceEEEE
Q 003176 32 DGGE--ANAVAINPETHFGDLKLKLAELL-NLE-YKSLSVKY 69 (842)
Q Consensus 32 ~gg~--~~~~~v~~~~~~~~~~~~~~~~~-~~~-~~~~~~~y 69 (842)
.+|. +..|.|+.+.+-.+|+.+|.+.+ ++. .+...|-|
T Consensus 31 ~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy 72 (99)
T 2kdb_A 31 PNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVY 72 (99)
T ss_dssp TTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEE
T ss_pred CCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEE
Confidence 3455 55788899999999999999986 333 36667777
No 156
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=20.88 E-value=1.1e+02 Score=32.20 Aligned_cols=41 Identities=10% Similarity=0.192 Sum_probs=36.4
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003176 30 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 70 (842)
Q Consensus 30 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 70 (842)
+...|++..+.|+.+.+-.+|+.+|++..+++.+...|-|.
T Consensus 239 Ktl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~ 279 (307)
T 3ai5_A 239 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279 (307)
T ss_dssp ECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC
Confidence 34468888999999999999999999999999999899883
No 157
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=20.30 E-value=84 Score=27.07 Aligned_cols=57 Identities=16% Similarity=0.238 Sum_probs=35.7
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHH
Q 003176 33 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRM 90 (842)
Q Consensus 33 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m 90 (842)
|+..+-|.|+.+++.+||+..|++.-.+-...-++.+.+-+..+.|. +.....|+.|
T Consensus 3 g~~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LY-mq~pp~Lee~ 59 (98)
T 1y8x_B 3 SQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLY-MQSVTSIEER 59 (98)
T ss_dssp --CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEE-CSSCHHHHHH
T ss_pred CCCcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEE-EeCcHHHHHH
Confidence 66788899999999999999999943322233345454444445555 4444455544
Done!