Query 003177
Match_columns 842
No_of_seqs 1225 out of 2931
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 18:30:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 8.9E-44 1.9E-48 369.2 26.7 308 510-842 126-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 4.5E-42 9.8E-47 356.5 25.7 289 551-842 106-437 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 6.6E-41 1.4E-45 352.5 24.6 287 551-842 166-458 (459)
4 KOG0286 G-protein beta subunit 100.0 5.9E-38 1.3E-42 316.9 35.0 292 548-842 43-343 (343)
5 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-38 5E-43 333.4 22.4 272 506-801 182-458 (459)
6 KOG0265 U5 snRNP-specific prot 100.0 3.6E-36 7.8E-41 305.2 28.6 288 552-840 39-334 (338)
7 KOG0318 WD40 repeat stress pro 100.0 3.8E-34 8.2E-39 308.1 37.4 339 498-842 58-558 (603)
8 KOG0266 WD40 repeat-containing 100.0 6.6E-34 1.4E-38 327.1 40.5 286 553-842 151-452 (456)
9 KOG0279 G protein beta subunit 100.0 3.2E-34 7E-39 288.5 32.5 284 551-842 6-311 (315)
10 cd00200 WD40 WD40 domain, foun 100.0 1.2E-33 2.7E-38 297.5 38.2 284 554-842 3-289 (289)
11 KOG0315 G-protein beta subunit 100.0 5E-34 1.1E-38 282.6 29.8 268 573-842 11-286 (311)
12 KOG0285 Pleiotropic regulator 100.0 2.5E-34 5.4E-39 296.7 26.5 289 548-842 139-437 (460)
13 KOG0318 WD40 repeat stress pro 100.0 3.4E-33 7.4E-38 300.8 35.9 293 546-842 176-600 (603)
14 KOG0295 WD40 repeat-containing 100.0 1.3E-34 2.8E-39 300.2 23.2 290 549-842 97-404 (406)
15 KOG0284 Polyadenylation factor 100.0 2.9E-35 6.2E-40 308.6 17.1 277 560-842 96-378 (464)
16 KOG0273 Beta-transducin family 100.0 1.6E-33 3.5E-38 300.1 29.7 316 512-842 192-521 (524)
17 KOG0315 G-protein beta subunit 100.0 9.1E-33 2E-37 273.7 31.8 289 510-823 9-309 (311)
18 KOG0279 G protein beta subunit 100.0 6.8E-33 1.5E-37 279.0 29.8 275 510-803 27-313 (315)
19 KOG0273 Beta-transducin family 100.0 6.3E-33 1.4E-37 295.6 28.8 282 553-842 172-480 (524)
20 KOG0645 WD40 repeat protein [G 100.0 1E-31 2.2E-36 269.4 34.0 283 550-842 4-309 (312)
21 KOG0293 WD40 repeat-containing 100.0 2.4E-33 5.3E-38 293.9 22.0 291 546-842 210-511 (519)
22 KOG0291 WD40-repeat-containing 100.0 2.6E-31 5.7E-36 296.0 38.6 322 506-842 103-506 (893)
23 KOG0282 mRNA splicing factor [ 100.0 1.4E-33 3E-38 301.9 19.0 290 551-842 205-503 (503)
24 KOG0291 WD40-repeat-containing 100.0 3.7E-31 8E-36 294.8 36.8 312 507-842 273-610 (893)
25 KOG0286 G-protein beta subunit 100.0 3.8E-31 8.1E-36 267.7 32.6 278 485-801 56-343 (343)
26 KOG0296 Angio-associated migra 100.0 2.1E-31 4.6E-36 276.6 31.4 311 506-842 71-396 (399)
27 PLN00181 protein SPA1-RELATED; 100.0 7.6E-31 1.7E-35 322.5 40.8 284 556-842 479-791 (793)
28 KOG0263 Transcription initiati 100.0 9.3E-32 2E-36 303.2 28.1 275 553-832 371-703 (707)
29 KOG0263 Transcription initiati 100.0 9.2E-32 2E-36 303.2 27.2 254 502-760 381-651 (707)
30 KOG0319 WD40-repeat-containing 100.0 2.8E-31 6E-36 296.0 28.5 288 551-842 314-617 (775)
31 KOG0295 WD40 repeat-containing 100.0 4.5E-31 9.8E-36 273.9 23.1 279 500-802 109-405 (406)
32 KOG0284 Polyadenylation factor 100.0 5.6E-32 1.2E-36 284.0 16.2 278 486-802 98-379 (464)
33 KOG0319 WD40-repeat-containing 100.0 3.5E-30 7.7E-35 287.2 28.7 316 504-842 110-575 (775)
34 KOG0306 WD40-repeat-containing 100.0 5E-30 1.1E-34 285.7 28.3 281 554-842 367-662 (888)
35 KOG0281 Beta-TrCP (transducin 100.0 1.8E-31 3.9E-36 274.3 14.9 266 558-842 195-475 (499)
36 KOG0276 Vesicle coat complex C 100.0 5.1E-30 1.1E-34 280.4 26.5 282 554-840 7-295 (794)
37 KOG0316 Conserved WD40 repeat- 100.0 1.4E-29 3.1E-34 249.1 26.2 280 552-841 9-296 (307)
38 KOG0306 WD40-repeat-containing 100.0 3E-29 6.5E-34 279.5 31.7 308 512-841 78-577 (888)
39 KOG0643 Translation initiation 100.0 4.4E-29 9.6E-34 249.8 28.6 281 555-841 5-314 (327)
40 cd00200 WD40 WD40 domain, foun 100.0 3.5E-28 7.6E-33 255.9 35.7 267 511-801 21-289 (289)
41 KOG0296 Angio-associated migra 100.0 3.5E-29 7.6E-34 260.2 27.1 285 552-842 56-354 (399)
42 KOG0276 Vesicle coat complex C 100.0 7.4E-29 1.6E-33 271.3 30.1 273 504-798 18-294 (794)
43 KOG0266 WD40 repeat-containing 100.0 9.8E-29 2.1E-33 284.3 32.8 277 505-803 165-454 (456)
44 KOG0278 Serine/threonine kinas 100.0 6.3E-30 1.4E-34 253.4 18.7 280 555-842 9-295 (334)
45 KOG1407 WD40 repeat protein [F 100.0 1.2E-28 2.6E-33 246.2 27.3 282 554-841 14-308 (313)
46 KOG0275 Conserved WD40 repeat- 100.0 3.6E-30 7.8E-35 262.3 16.6 280 558-842 211-507 (508)
47 KOG0281 Beta-TrCP (transducin 100.0 2.3E-30 5E-35 266.2 13.3 267 510-808 206-482 (499)
48 KOG0288 WD40 repeat protein Ti 100.0 1.3E-29 2.7E-34 266.8 17.4 282 553-842 168-459 (459)
49 KOG0265 U5 snRNP-specific prot 100.0 3.7E-28 8.1E-33 247.0 27.3 271 508-802 56-337 (338)
50 KOG0292 Vesicle coat complex C 100.0 2.4E-28 5.1E-33 275.6 26.4 282 556-841 5-318 (1202)
51 KOG1446 Histone H3 (Lys4) meth 100.0 8.9E-27 1.9E-31 239.4 33.0 282 552-841 6-300 (311)
52 KOG0645 WD40 repeat protein [G 100.0 5.1E-27 1.1E-31 235.8 29.4 270 511-803 27-311 (312)
53 KOG0640 mRNA cleavage stimulat 100.0 4.7E-28 1E-32 246.2 22.0 287 552-842 104-424 (430)
54 KOG0285 Pleiotropic regulator 100.0 1.2E-27 2.5E-32 247.5 25.2 281 502-804 154-440 (460)
55 KOG0313 Microtubule binding pr 100.0 2.6E-27 5.7E-32 247.2 27.3 271 508-803 112-418 (423)
56 KOG0313 Microtubule binding pr 100.0 2.4E-27 5.3E-32 247.4 27.0 278 558-842 103-416 (423)
57 KOG0283 WD40 repeat-containing 100.0 1.2E-27 2.6E-32 272.3 26.0 247 551-803 257-576 (712)
58 PLN00181 protein SPA1-RELATED; 100.0 2.3E-26 4.9E-31 282.9 39.4 286 502-802 486-792 (793)
59 PTZ00420 coronin; Provisional 100.0 3.9E-26 8.5E-31 264.0 37.9 249 578-826 50-318 (568)
60 KOG0277 Peroxisomal targeting 100.0 1.7E-27 3.7E-32 237.1 22.4 276 564-842 12-307 (311)
61 KOG0268 Sof1-like rRNA process 100.0 1.8E-28 3.9E-33 254.3 15.6 280 552-842 58-343 (433)
62 KOG0278 Serine/threonine kinas 100.0 5.2E-28 1.1E-32 239.8 18.2 275 508-808 26-302 (334)
63 KOG0772 Uncharacterized conser 100.0 4.4E-27 9.5E-32 252.9 26.7 289 551-841 158-484 (641)
64 KOG0316 Conserved WD40 repeat- 100.0 4E-27 8.7E-32 231.9 24.0 264 510-800 28-296 (307)
65 KOG0310 Conserved WD40 repeat- 100.0 7.8E-27 1.7E-31 250.8 26.2 276 560-840 26-305 (487)
66 KOG0282 mRNA splicing factor [ 100.0 2.9E-28 6.2E-33 261.3 15.1 248 592-842 204-460 (503)
67 KOG0274 Cdc4 and related F-box 100.0 1.7E-26 3.7E-31 266.1 30.5 270 558-842 206-480 (537)
68 KOG0293 WD40 repeat-containing 100.0 3.6E-27 7.9E-32 247.7 21.5 277 506-804 231-514 (519)
69 KOG0289 mRNA splicing factor [ 100.0 2.1E-26 4.5E-31 243.7 26.8 276 561-841 220-503 (506)
70 KOG0973 Histone transcription 100.0 2.2E-26 4.7E-31 267.8 29.5 280 558-841 11-352 (942)
71 PTZ00421 coronin; Provisional 100.0 1.6E-25 3.4E-30 257.7 36.3 263 561-825 21-314 (493)
72 KOG0275 Conserved WD40 repeat- 100.0 1.5E-27 3.2E-32 243.3 16.8 277 508-801 222-507 (508)
73 KOG0305 Anaphase promoting com 100.0 3.3E-26 7.1E-31 255.1 28.9 267 566-842 183-459 (484)
74 KOG0294 WD40 repeat-containing 99.9 9.4E-26 2E-30 230.8 28.2 293 514-823 4-306 (362)
75 KOG0292 Vesicle coat complex C 99.9 9.5E-26 2.1E-30 254.7 30.5 273 506-803 16-321 (1202)
76 KOG0283 WD40 repeat-containing 99.9 2.6E-26 5.7E-31 261.4 25.4 246 594-842 258-574 (712)
77 KOG0300 WD40 repeat-containing 99.9 3.5E-26 7.6E-31 232.9 22.0 289 549-842 137-474 (481)
78 KOG0647 mRNA export protein (c 99.9 1.5E-25 3.3E-30 228.1 25.8 271 557-832 24-311 (347)
79 KOG0274 Cdc4 and related F-box 99.9 2.5E-25 5.4E-30 256.5 30.3 265 511-808 218-487 (537)
80 KOG0288 WD40 repeat protein Ti 99.9 1.8E-26 3.9E-31 243.1 17.3 268 508-800 184-458 (459)
81 KOG0310 Conserved WD40 repeat- 99.9 1.6E-25 3.6E-30 240.7 24.2 242 556-803 64-309 (487)
82 KOG0641 WD40 repeat protein [G 99.9 7.5E-24 1.6E-28 207.2 33.3 290 548-841 21-346 (350)
83 KOG0308 Conserved WD40 repeat- 99.9 3.4E-26 7.4E-31 252.2 18.9 270 570-842 35-325 (735)
84 PTZ00421 coronin; Provisional 99.9 6.1E-24 1.3E-28 244.5 37.0 245 554-805 69-333 (493)
85 KOG0277 Peroxisomal targeting 99.9 2.4E-25 5.1E-30 221.8 20.8 248 551-802 52-308 (311)
86 KOG2096 WD40 repeat protein [G 99.9 1.2E-24 2.5E-29 222.5 26.2 285 553-841 79-399 (420)
87 KOG1407 WD40 repeat protein [F 99.9 3.3E-25 7.2E-30 221.6 21.4 241 596-840 14-257 (313)
88 KOG1408 WD40 repeat protein [F 99.9 7.2E-25 1.6E-29 242.4 25.3 338 504-842 263-711 (1080)
89 KOG0973 Histone transcription 99.9 8.3E-25 1.8E-29 254.7 27.0 287 509-806 23-358 (942)
90 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.1E-23 4.6E-28 225.1 35.7 264 572-842 1-277 (300)
91 KOG1036 Mitotic spindle checkp 99.9 2.8E-24 6.2E-29 219.9 26.4 269 559-834 12-294 (323)
92 KOG0641 WD40 repeat protein [G 99.9 2.9E-23 6.3E-28 203.1 32.2 294 502-803 35-349 (350)
93 KOG0299 U3 snoRNP-associated p 99.9 2.3E-24 5.1E-29 230.2 24.6 284 504-794 147-446 (479)
94 KOG0305 Anaphase promoting com 99.9 5.4E-24 1.2E-28 237.4 28.0 240 559-805 216-463 (484)
95 KOG1539 WD repeat protein [Gen 99.9 5.3E-23 1.1E-27 232.6 36.1 308 514-841 175-645 (910)
96 KOG0640 mRNA cleavage stimulat 99.9 8.6E-25 1.9E-29 222.6 19.5 293 507-803 120-426 (430)
97 KOG0308 Conserved WD40 repeat- 99.9 1.3E-24 2.7E-29 239.9 21.2 316 510-842 36-391 (735)
98 KOG0301 Phospholipase A2-activ 99.9 8.4E-24 1.8E-28 235.1 27.1 275 551-841 5-285 (745)
99 KOG0299 U3 snoRNP-associated p 99.9 1.2E-23 2.6E-28 224.8 26.5 273 553-832 135-443 (479)
100 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.6E-22 1E-26 214.6 39.0 286 512-824 2-300 (300)
101 KOG0639 Transducin-like enhanc 99.9 1.1E-23 2.4E-28 225.6 25.2 277 558-841 417-701 (705)
102 KOG0647 mRNA export protein (c 99.9 3.2E-23 6.9E-28 211.3 27.2 277 478-794 21-314 (347)
103 KOG0772 Uncharacterized conser 99.9 6.6E-24 1.4E-28 228.5 23.3 286 498-801 166-485 (641)
104 KOG1273 WD40 repeat protein [G 99.9 1.4E-23 3E-28 214.5 24.4 276 563-842 26-320 (405)
105 KOG0294 WD40 repeat-containing 99.9 2.7E-23 5.9E-28 212.8 25.8 258 575-842 4-279 (362)
106 KOG2055 WD40 repeat protein [G 99.9 1.7E-23 3.7E-28 223.3 25.2 283 559-842 212-510 (514)
107 PTZ00420 coronin; Provisional 99.9 2.1E-22 4.7E-27 233.0 36.5 229 552-785 66-318 (568)
108 KOG0643 Translation initiation 99.9 3.8E-23 8.3E-28 207.4 25.4 234 597-834 5-251 (327)
109 KOG0301 Phospholipase A2-activ 99.9 4.5E-23 9.8E-28 229.3 25.8 261 511-804 25-289 (745)
110 KOG0268 Sof1-like rRNA process 99.9 3.9E-24 8.5E-29 222.1 16.3 266 513-806 81-348 (433)
111 KOG1332 Vesicle coat complex C 99.9 1.5E-23 3.3E-28 207.9 18.2 248 556-803 7-286 (299)
112 KOG0289 mRNA splicing factor [ 99.9 1.3E-22 2.7E-27 215.1 26.0 270 512-802 232-505 (506)
113 KOG1063 RNA polymerase II elon 99.9 2.9E-22 6.3E-27 222.7 28.1 333 506-842 201-646 (764)
114 KOG1408 WD40 repeat protein [F 99.9 1.4E-22 3.1E-27 224.4 24.1 246 556-804 455-714 (1080)
115 KOG0650 WD40 repeat nucleolar 99.9 1.2E-22 2.5E-27 222.3 23.2 290 547-841 387-732 (733)
116 KOG1446 Histone H3 (Lys4) meth 99.9 3.4E-21 7.4E-26 198.4 32.4 270 506-803 21-303 (311)
117 KOG0264 Nucleosome remodeling 99.9 3.5E-22 7.6E-27 213.9 25.1 253 552-804 116-405 (422)
118 KOG0269 WD40 repeat-containing 99.9 5.1E-23 1.1E-27 231.2 18.8 275 562-839 41-335 (839)
119 KOG0646 WD40 repeat protein [G 99.9 1.9E-22 4.1E-27 216.1 21.0 229 559-790 80-336 (476)
120 KOG2106 Uncharacterized conser 99.9 1.1E-20 2.4E-25 203.4 34.3 293 542-842 227-624 (626)
121 KOG4283 Transcription-coupled 99.9 1.3E-21 2.8E-26 198.5 25.2 283 555-841 38-362 (397)
122 KOG1332 Vesicle coat complex C 99.9 1.4E-22 3.1E-27 201.1 17.0 243 599-842 8-284 (299)
123 KOG0264 Nucleosome remodeling 99.9 5.7E-22 1.2E-26 212.3 22.5 242 599-842 121-402 (422)
124 KOG1274 WD40 repeat protein [G 99.9 2.7E-21 5.8E-26 221.2 29.3 277 557-841 10-297 (933)
125 KOG0321 WD40 repeat-containing 99.9 7.8E-22 1.7E-26 217.6 21.5 275 566-842 55-389 (720)
126 KOG2445 Nuclear pore complex c 99.9 8.8E-21 1.9E-25 193.9 26.0 257 557-842 10-316 (361)
127 KOG0639 Transducin-like enhanc 99.9 3.2E-21 6.9E-26 207.0 23.8 236 560-802 465-703 (705)
128 KOG1274 WD40 repeat protein [G 99.9 5E-21 1.1E-25 219.1 26.9 241 599-842 10-260 (933)
129 KOG2055 WD40 repeat protein [G 99.9 2.5E-21 5.4E-26 206.9 22.7 278 503-803 217-512 (514)
130 KOG2106 Uncharacterized conser 99.9 7.5E-20 1.6E-24 197.1 34.0 294 534-842 177-519 (626)
131 KOG1036 Mitotic spindle checkp 99.9 2.6E-20 5.7E-25 191.0 28.2 254 511-794 25-295 (323)
132 KOG1539 WD repeat protein [Gen 99.9 7.4E-20 1.6E-24 207.3 34.1 276 561-842 160-604 (910)
133 KOG0267 Microtubule severing p 99.9 1.1E-22 2.3E-27 226.9 10.4 252 573-835 5-259 (825)
134 KOG0267 Microtubule severing p 99.9 8.2E-23 1.8E-27 227.8 9.4 239 552-795 20-260 (825)
135 KOG2048 WD40 repeat protein [G 99.9 8.1E-20 1.8E-24 203.4 32.8 281 552-840 17-315 (691)
136 KOG0300 WD40 repeat-containing 99.9 4.6E-21 1E-25 195.7 20.2 258 574-842 126-426 (481)
137 KOG1063 RNA polymerase II elon 99.9 3.5E-20 7.5E-25 206.4 27.0 345 480-842 282-761 (764)
138 KOG0646 WD40 repeat protein [G 99.9 2.2E-20 4.8E-25 200.3 24.0 259 577-842 12-305 (476)
139 KOG2048 WD40 repeat protein [G 99.9 8.2E-19 1.8E-23 195.5 33.2 270 510-802 36-318 (691)
140 KOG1034 Transcriptional repres 99.9 5.6E-20 1.2E-24 189.5 21.9 285 554-842 32-381 (385)
141 KOG4328 WD40 protein [Function 99.9 8.8E-20 1.9E-24 195.1 24.2 293 548-841 174-492 (498)
142 KOG1538 Uncharacterized conser 99.8 7.9E-20 1.7E-24 201.4 23.6 269 562-842 14-291 (1081)
143 KOG0269 WD40 repeat-containing 99.8 8E-21 1.7E-25 213.7 16.1 233 511-760 100-342 (839)
144 KOG0321 WD40 repeat-containing 99.8 6.3E-20 1.4E-24 202.6 22.6 282 508-805 61-393 (720)
145 KOG4378 Nuclear protein COP1 [ 99.8 7.9E-20 1.7E-24 196.2 22.5 256 563-826 37-305 (673)
146 KOG2919 Guanine nucleotide-bin 99.8 1.2E-19 2.6E-24 186.5 22.8 268 563-835 52-361 (406)
147 KOG4283 Transcription-coupled 99.8 2.3E-19 4.9E-24 182.3 24.4 282 510-802 55-364 (397)
148 KOG0302 Ribosome Assembly prot 99.8 7.4E-20 1.6E-24 191.4 21.3 243 557-800 148-435 (440)
149 KOG4328 WD40 protein [Function 99.8 1.9E-19 4.1E-24 192.6 23.1 274 512-804 201-496 (498)
150 COG2319 FOG: WD40 repeat [Gene 99.8 2.5E-17 5.4E-22 181.9 41.3 313 507-842 73-398 (466)
151 KOG0307 Vesicle coat complex C 99.8 2E-20 4.2E-25 219.2 16.0 243 561-806 65-330 (1049)
152 COG2319 FOG: WD40 repeat [Gene 99.8 3.5E-17 7.7E-22 180.7 41.1 284 551-842 146-440 (466)
153 KOG1009 Chromatin assembly com 99.8 6.3E-19 1.4E-23 186.3 24.4 296 513-840 28-368 (434)
154 KOG0270 WD40 repeat-containing 99.8 1.9E-19 4.2E-24 192.0 20.6 236 571-808 191-454 (463)
155 KOG0307 Vesicle coat complex C 99.8 2.5E-20 5.4E-25 218.3 12.9 274 565-841 11-324 (1049)
156 KOG2096 WD40 repeat protein [G 99.8 1E-18 2.2E-23 179.2 21.7 243 596-841 80-357 (420)
157 KOG0270 WD40 repeat-containing 99.8 5.7E-19 1.2E-23 188.5 20.2 252 508-760 189-451 (463)
158 KOG1273 WD40 repeat protein [G 99.8 1.4E-18 3.1E-23 178.0 21.5 273 506-803 30-322 (405)
159 KOG0650 WD40 repeat nucleolar 99.8 7.3E-19 1.6E-23 192.8 20.6 243 594-841 392-677 (733)
160 KOG0302 Ribosome Assembly prot 99.8 1.2E-18 2.6E-23 182.4 20.7 241 599-841 148-435 (440)
161 KOG4378 Nuclear protein COP1 [ 99.8 2.3E-18 5E-23 185.1 23.0 219 563-785 82-305 (673)
162 KOG0322 G-protein beta subunit 99.8 5E-19 1.1E-23 177.7 14.8 285 552-842 6-321 (323)
163 KOG1445 Tumor-specific antigen 99.8 5.5E-18 1.2E-22 186.1 23.6 114 729-842 627-748 (1012)
164 KOG4227 WD40 repeat protein [G 99.8 6E-18 1.3E-22 177.1 21.6 283 554-842 50-385 (609)
165 PRK11028 6-phosphogluconolacto 99.8 1.1E-16 2.4E-21 177.2 31.8 266 575-842 5-302 (330)
166 PRK11028 6-phosphogluconolacto 99.8 4.6E-16 1E-20 172.2 36.6 288 515-822 6-327 (330)
167 KOG1188 WD40 repeat protein [G 99.8 3.8E-18 8.3E-23 177.0 18.0 266 573-842 41-344 (376)
168 KOG0303 Actin-binding protein 99.8 1.9E-17 4.1E-22 174.3 23.3 228 597-825 76-320 (472)
169 KOG0642 Cell-cycle nuclear pro 99.8 2.5E-18 5.4E-23 188.4 16.9 254 550-808 284-566 (577)
170 KOG0644 Uncharacterized conser 99.8 1.4E-18 3E-23 196.2 10.8 275 551-841 181-465 (1113)
171 KOG0642 Cell-cycle nuclear pro 99.8 1.5E-17 3.2E-22 182.4 17.3 254 504-771 299-571 (577)
172 KOG2445 Nuclear pore complex c 99.8 7.8E-16 1.7E-20 157.9 28.1 249 507-771 21-331 (361)
173 KOG2919 Guanine nucleotide-bin 99.8 2.4E-16 5.1E-21 162.4 24.4 273 512-794 62-361 (406)
174 KOG1334 WD40 repeat protein [G 99.7 6E-18 1.3E-22 182.2 12.8 292 550-841 132-463 (559)
175 KOG1517 Guanine nucleotide bin 99.7 2.3E-16 5E-21 182.4 24.9 280 560-842 1064-1379(1387)
176 KOG0303 Actin-binding protein 99.7 1.4E-16 3E-21 167.9 20.1 207 551-761 72-297 (472)
177 KOG1007 WD repeat protein TSSC 99.7 1.5E-16 3.3E-21 161.6 19.7 271 553-840 56-357 (370)
178 KOG0290 Conserved WD40 repeat- 99.7 4.8E-16 1E-20 158.2 22.1 241 557-800 93-362 (364)
179 KOG1587 Cytoplasmic dynein int 99.7 1.8E-15 3.8E-20 173.9 27.7 258 582-842 222-514 (555)
180 KOG1240 Protein kinase contain 99.7 1.8E-15 3.9E-20 177.8 26.8 292 551-842 1039-1431(1431)
181 KOG1034 Transcriptional repres 99.7 3.6E-16 7.8E-21 161.6 18.3 242 558-803 87-383 (385)
182 PRK01742 tolB translocation pr 99.7 1.6E-15 3.4E-20 174.0 25.8 232 581-825 183-426 (429)
183 KOG0649 WD40 repeat protein [G 99.7 6.8E-15 1.5E-19 146.5 25.7 268 562-841 12-313 (325)
184 KOG1188 WD40 repeat protein [G 99.7 5E-16 1.1E-20 161.5 17.8 273 511-803 40-346 (376)
185 KOG1963 WD40 repeat protein [G 99.7 8.2E-15 1.8E-19 168.5 28.6 282 557-842 202-536 (792)
186 KOG1524 WD40 repeat-containing 99.7 9.3E-16 2E-20 166.5 19.3 262 558-840 12-282 (737)
187 KOG1538 Uncharacterized conser 99.7 2.7E-15 5.7E-20 166.1 21.9 240 552-803 45-293 (1081)
188 KOG1587 Cytoplasmic dynein int 99.7 2.3E-15 5E-20 173.0 22.3 246 559-805 241-518 (555)
189 KOG0649 WD40 repeat protein [G 99.7 7.5E-15 1.6E-19 146.2 22.5 229 604-841 12-271 (325)
190 KOG0290 Conserved WD40 repeat- 99.7 1.2E-14 2.6E-19 148.1 24.2 281 553-839 38-360 (364)
191 KOG2110 Uncharacterized conser 99.7 8E-14 1.7E-18 146.6 30.3 233 560-804 5-249 (391)
192 PRK03629 tolB translocation pr 99.7 2.9E-14 6.2E-19 163.4 29.8 234 582-824 179-427 (429)
193 PRK01742 tolB translocation pr 99.7 5.2E-15 1.1E-19 169.7 23.5 220 554-784 197-426 (429)
194 KOG1310 WD40 repeat protein [G 99.7 4.8E-16 1E-20 169.1 13.8 237 552-808 42-308 (758)
195 KOG1523 Actin-related protein 99.7 1.2E-14 2.6E-19 150.1 22.6 226 556-784 6-260 (361)
196 KOG4497 Uncharacterized conser 99.7 3.9E-14 8.4E-19 146.4 25.7 271 561-837 49-425 (447)
197 KOG2139 WD40 repeat protein [G 99.7 3.7E-14 8E-19 148.4 25.3 278 560-841 98-428 (445)
198 KOG1272 WD40-repeat-containing 99.6 4E-16 8.8E-21 167.4 10.6 262 563-836 132-401 (545)
199 KOG2321 WD40 repeat protein [G 99.6 2.6E-14 5.6E-19 156.9 24.8 276 558-840 49-339 (703)
200 PF02239 Cytochrom_D1: Cytochr 99.6 3.2E-13 6.9E-18 151.0 33.6 285 552-842 28-345 (369)
201 KOG2110 Uncharacterized conser 99.6 7.5E-14 1.6E-18 146.9 26.5 230 602-842 5-246 (391)
202 PRK04922 tolB translocation pr 99.6 6.6E-14 1.4E-18 160.9 28.0 234 582-824 184-432 (433)
203 PRK05137 tolB translocation pr 99.6 1.2E-13 2.6E-18 158.9 29.8 234 582-825 182-433 (435)
204 KOG1007 WD repeat protein TSSC 99.6 2.3E-14 4.9E-19 146.0 20.3 211 547-759 109-362 (370)
205 KOG0771 Prolactin regulatory e 99.6 7E-15 1.5E-19 157.1 15.8 194 564-759 148-355 (398)
206 KOG4227 WD40 repeat protein [G 99.6 8.2E-14 1.8E-18 146.4 22.8 288 502-803 59-387 (609)
207 KOG0644 Uncharacterized conser 99.6 1.5E-15 3.2E-20 172.1 10.4 269 504-807 195-472 (1113)
208 KOG1445 Tumor-specific antigen 99.6 1.1E-13 2.4E-18 152.8 24.3 237 570-808 589-849 (1012)
209 KOG2111 Uncharacterized conser 99.6 1.6E-12 3.4E-17 134.6 30.7 230 563-804 8-257 (346)
210 KOG1963 WD40 repeat protein [G 99.6 2.6E-13 5.7E-18 156.3 27.2 274 563-840 19-318 (792)
211 PRK02889 tolB translocation pr 99.6 2.7E-13 5.9E-18 155.4 27.6 235 582-825 176-425 (427)
212 PF10282 Lactonase: Lactonase, 99.6 1.6E-11 3.5E-16 136.9 40.6 262 561-822 37-345 (345)
213 KOG1517 Guanine nucleotide bin 99.6 1.3E-13 2.9E-18 159.9 23.5 265 541-806 1090-1384(1387)
214 KOG2394 WD40 protein DMR-N9 [G 99.6 4.3E-13 9.4E-18 146.5 25.1 244 562-823 125-383 (636)
215 KOG1524 WD40 repeat-containing 99.6 2.7E-14 5.8E-19 155.3 15.5 207 573-800 76-283 (737)
216 KOG1523 Actin-related protein 99.6 2.7E-13 5.8E-18 140.3 21.9 227 598-825 6-260 (361)
217 KOG1009 Chromatin assembly com 99.6 4.1E-13 8.9E-18 142.7 23.8 290 491-806 57-375 (434)
218 PRK02889 tolB translocation pr 99.6 8.1E-13 1.8E-17 151.5 27.8 223 555-784 190-425 (427)
219 KOG0771 Prolactin regulatory e 99.6 2.7E-13 5.8E-18 145.1 20.9 190 649-840 148-350 (398)
220 KOG3881 Uncharacterized conser 99.6 3.6E-13 7.9E-18 142.6 21.4 261 559-825 54-342 (412)
221 PRK04922 tolB translocation pr 99.5 1.3E-12 2.8E-17 150.2 27.6 221 554-783 197-432 (433)
222 PRK03629 tolB translocation pr 99.5 1.2E-12 2.6E-17 150.0 26.7 220 556-784 194-428 (429)
223 PF10282 Lactonase: Lactonase, 99.5 4.9E-11 1.1E-15 133.0 38.4 267 575-842 2-320 (345)
224 TIGR02800 propeller_TolB tol-p 99.5 2.4E-12 5.1E-17 147.1 28.4 232 582-822 170-416 (417)
225 PRK05137 tolB translocation pr 99.5 3.9E-12 8.5E-17 146.3 28.7 221 554-784 195-433 (435)
226 KOG2315 Predicted translation 99.5 4E-12 8.7E-17 140.2 27.1 267 562-842 36-388 (566)
227 KOG1354 Serine/threonine prote 99.5 1.3E-12 2.9E-17 136.0 21.7 277 560-841 25-431 (433)
228 PRK00178 tolB translocation pr 99.5 6.1E-12 1.3E-16 144.6 29.6 234 583-825 180-428 (430)
229 KOG2394 WD40 protein DMR-N9 [G 99.5 1.6E-12 3.5E-17 142.1 22.5 169 570-739 183-384 (636)
230 PF02239 Cytochrom_D1: Cytochr 99.5 2E-11 4.3E-16 136.6 32.0 263 573-842 6-300 (369)
231 KOG2111 Uncharacterized conser 99.5 5.6E-12 1.2E-16 130.6 25.1 231 604-841 7-253 (346)
232 KOG3881 Uncharacterized conser 99.5 1.3E-12 2.9E-17 138.4 20.6 237 601-842 54-318 (412)
233 KOG4594 Sequence-specific sing 99.5 1.5E-14 3.3E-19 146.0 5.0 77 4-81 12-92 (354)
234 KOG1240 Protein kinase contain 99.5 4E-12 8.7E-17 150.1 24.9 251 587-842 1034-1332(1431)
235 PRK04792 tolB translocation pr 99.5 1E-11 2.3E-16 143.0 27.4 233 583-824 199-446 (448)
236 KOG1272 WD40-repeat-containing 99.5 8E-14 1.7E-18 149.9 8.6 230 602-842 129-360 (545)
237 KOG4497 Uncharacterized conser 99.5 3.5E-13 7.6E-18 139.4 11.9 219 607-841 13-237 (447)
238 KOG2139 WD40 repeat protein [G 99.4 9.5E-12 2.1E-16 130.6 21.5 229 603-836 99-367 (445)
239 COG5354 Uncharacterized protei 99.4 9E-11 1.9E-15 128.2 28.8 273 561-842 72-393 (561)
240 KOG1409 Uncharacterized conser 99.4 8.4E-12 1.8E-16 130.3 19.3 252 548-804 12-271 (404)
241 KOG1334 WD40 repeat protein [G 99.4 1.5E-12 3.3E-17 141.0 13.8 283 503-806 146-469 (559)
242 PRK01029 tolB translocation pr 99.4 1.4E-10 2.9E-15 132.9 29.7 238 582-826 165-426 (428)
243 COG2706 3-carboxymuconate cycl 99.4 2.1E-09 4.6E-14 114.1 35.5 266 558-823 37-345 (346)
244 KOG0322 G-protein beta subunit 99.4 5.8E-12 1.3E-16 127.3 15.5 264 512-802 26-322 (323)
245 TIGR02658 TTQ_MADH_Hv methylam 99.4 9.6E-10 2.1E-14 120.8 34.2 256 582-842 27-328 (352)
246 PRK00178 tolB translocation pr 99.4 7.6E-11 1.6E-15 135.5 26.7 222 554-784 192-428 (430)
247 TIGR02800 propeller_TolB tol-p 99.4 9.9E-11 2.1E-15 133.8 27.1 204 625-836 171-386 (417)
248 KOG2321 WD40 repeat protein [G 99.4 3.4E-11 7.3E-16 132.8 21.7 237 600-842 49-300 (703)
249 PF08662 eIF2A: Eukaryotic tra 99.4 3.7E-11 7.9E-16 122.6 20.0 146 690-842 8-177 (194)
250 PRK01029 tolB translocation pr 99.4 1.5E-10 3.2E-15 132.6 27.1 214 624-841 165-400 (428)
251 PRK04792 tolB translocation pr 99.4 9.4E-11 2E-15 135.1 25.6 220 555-783 212-446 (448)
252 KOG1310 WD40 repeat protein [G 99.3 4.3E-12 9.4E-17 138.7 11.9 166 594-759 42-232 (758)
253 PF08662 eIF2A: Eukaryotic tra 99.3 9.2E-11 2E-15 119.7 20.8 155 564-724 9-185 (194)
254 COG2706 3-carboxymuconate cycl 99.3 4E-09 8.6E-14 112.1 32.3 261 581-841 15-318 (346)
255 TIGR03300 assembly_YfgL outer 99.3 3.5E-09 7.6E-14 119.5 33.2 254 571-842 104-377 (377)
256 KOG0974 WD-repeat protein WDR6 99.3 6.1E-11 1.3E-15 139.1 18.9 267 560-842 7-286 (967)
257 KOG4547 WD40 repeat-containing 99.3 4.2E-10 9.2E-15 125.4 24.4 187 570-759 3-221 (541)
258 KOG2314 Translation initiation 99.3 4.5E-10 9.7E-15 123.6 22.4 264 564-836 214-559 (698)
259 KOG4190 Uncharacterized conser 99.3 3.8E-11 8.1E-16 131.1 12.5 280 552-840 727-1032(1034)
260 KOG2315 Predicted translation 99.2 1.2E-09 2.6E-14 121.0 24.1 248 564-824 129-410 (566)
261 KOG0280 Uncharacterized conser 99.2 3.8E-10 8.3E-15 116.0 17.8 199 562-760 123-335 (339)
262 KOG2041 WD40 repeat protein [G 99.2 1.5E-09 3.2E-14 122.1 22.9 275 560-840 14-333 (1189)
263 TIGR02658 TTQ_MADH_Hv methylam 99.2 4.6E-08 9.9E-13 107.7 34.2 234 568-811 53-338 (352)
264 PRK04043 tolB translocation pr 99.2 1.3E-08 2.9E-13 116.0 30.8 228 582-821 169-418 (419)
265 KOG0309 Conserved WD40 repeat- 99.2 1.2E-10 2.6E-15 131.2 13.6 279 560-841 24-336 (1081)
266 COG5354 Uncharacterized protei 99.2 3.3E-09 7.1E-14 116.2 23.7 269 560-842 32-346 (561)
267 TIGR03300 assembly_YfgL outer 99.2 1.6E-08 3.5E-13 114.1 30.5 252 572-842 65-336 (377)
268 COG4946 Uncharacterized protei 99.2 2.1E-08 4.6E-13 108.8 29.1 282 538-833 205-507 (668)
269 KOG1354 Serine/threonine prote 99.2 2.3E-09 4.9E-14 112.3 20.9 240 505-760 31-361 (433)
270 KOG4547 WD40 repeat-containing 99.2 3.8E-09 8.2E-14 118.0 22.4 188 612-804 3-221 (541)
271 KOG2041 WD40 repeat protein [G 99.1 1.3E-08 2.8E-13 114.7 25.6 306 511-838 26-402 (1189)
272 COG5170 CDC55 Serine/threonine 99.1 1.4E-09 3.1E-14 112.1 16.5 238 560-801 26-365 (460)
273 PLN02919 haloacid dehalogenase 99.1 5.1E-08 1.1E-12 122.7 33.7 238 564-807 571-892 (1057)
274 PLN02919 haloacid dehalogenase 99.1 4.2E-08 9E-13 123.5 32.0 232 606-842 571-886 (1057)
275 KOG0974 WD-repeat protein WDR6 99.1 3.5E-09 7.6E-14 124.6 20.6 196 560-760 87-290 (967)
276 PRK04043 tolB translocation pr 99.1 4.4E-08 9.6E-13 111.7 28.8 200 625-835 170-388 (419)
277 PF04762 IKI3: IKI3 family; I 99.1 9.7E-08 2.1E-12 118.1 33.0 282 558-842 73-454 (928)
278 COG4946 Uncharacterized protei 99.1 1.7E-07 3.6E-12 101.9 29.4 171 571-748 331-507 (668)
279 KOG1912 WD40 repeat protein [G 99.0 6.3E-08 1.4E-12 110.5 24.9 210 549-759 44-305 (1062)
280 KOG0280 Uncharacterized conser 99.0 3.1E-08 6.6E-13 102.2 19.5 241 560-801 69-331 (339)
281 KOG1409 Uncharacterized conser 99.0 8.6E-09 1.9E-13 108.1 15.4 244 594-842 16-268 (404)
282 KOG4532 WD40-like repeat conta 99.0 6.9E-08 1.5E-12 98.4 21.2 249 580-835 50-323 (344)
283 KOG1064 RAVE (regulator of V-A 99.0 2.1E-09 4.5E-14 131.3 12.1 209 615-842 2181-2396(2439)
284 KOG1064 RAVE (regulator of V-A 99.0 2.5E-09 5.5E-14 130.6 12.4 190 555-760 2203-2400(2439)
285 PF08450 SGL: SMP-30/Gluconola 99.0 2.3E-06 5E-11 90.6 33.8 218 565-793 4-245 (246)
286 PF08450 SGL: SMP-30/Gluconola 99.0 1.7E-06 3.6E-11 91.7 32.2 217 606-832 3-243 (246)
287 KOG1912 WD40 repeat protein [G 98.9 4.5E-08 9.7E-13 111.6 20.0 240 559-804 14-305 (1062)
288 PRK11138 outer membrane biogen 98.9 6.9E-07 1.5E-11 101.6 29.2 254 572-842 120-392 (394)
289 PF13360 PQQ_2: PQQ-like domai 98.9 8.5E-07 1.8E-11 92.9 27.4 216 581-808 2-235 (238)
290 PF04762 IKI3: IKI3 family; I 98.9 1.1E-06 2.4E-11 108.9 32.3 236 601-841 74-376 (928)
291 KOG3914 WD repeat protein WDR4 98.9 3.7E-08 7.9E-13 105.7 14.7 164 507-686 70-233 (390)
292 KOG1832 HIV-1 Vpr-binding prot 98.9 1.8E-09 3.9E-14 123.8 5.0 264 549-832 1090-1377(1516)
293 KOG0309 Conserved WD40 repeat- 98.8 1.2E-08 2.7E-13 115.4 10.7 207 553-759 107-340 (1081)
294 KOG4190 Uncharacterized conser 98.8 1.1E-08 2.3E-13 112.2 10.0 206 595-807 728-952 (1034)
295 KOG0882 Cyclophilin-related pe 98.8 1E-08 2.2E-13 110.8 9.4 277 508-815 17-317 (558)
296 PF07433 DUF1513: Protein of u 98.8 7.7E-06 1.7E-10 87.5 28.1 244 563-834 7-276 (305)
297 KOG2314 Translation initiation 98.7 2E-06 4.3E-11 95.5 24.0 287 506-804 256-574 (698)
298 PRK11138 outer membrane biogen 98.7 2.1E-06 4.5E-11 97.7 25.5 255 572-842 69-351 (394)
299 PF13360 PQQ_2: PQQ-like domai 98.7 3.2E-06 7E-11 88.5 25.0 212 622-842 1-228 (238)
300 PF00930 DPPIV_N: Dipeptidyl p 98.7 5.9E-06 1.3E-10 92.6 27.9 259 569-833 1-346 (353)
301 KOG4532 WD40-like repeat conta 98.7 1.8E-06 3.9E-11 88.2 20.8 243 499-760 72-333 (344)
302 KOG4714 Nucleoporin [Nuclear s 98.7 2.5E-07 5.5E-12 94.0 13.7 199 512-718 48-255 (319)
303 KOG1645 RING-finger-containing 98.7 1.8E-06 3.8E-11 92.8 20.1 251 584-842 175-459 (463)
304 PF15492 Nbas_N: Neuroblastoma 98.7 1.4E-05 2.9E-10 83.3 25.8 227 566-808 3-264 (282)
305 COG5170 CDC55 Serine/threonine 98.7 1.7E-07 3.6E-12 97.2 11.4 234 601-842 25-307 (460)
306 KOG1645 RING-finger-containing 98.6 9.8E-07 2.1E-11 94.7 17.0 246 550-803 183-461 (463)
307 KOG4714 Nucleoporin [Nuclear s 98.6 4.5E-07 9.7E-12 92.3 12.9 195 563-759 39-255 (319)
308 PRK02888 nitrous-oxide reducta 98.6 1.2E-05 2.5E-10 93.3 25.2 179 653-833 200-450 (635)
309 KOG1920 IkappaB kinase complex 98.6 9.6E-06 2.1E-10 97.7 25.1 243 561-808 69-327 (1265)
310 PF04053 Coatomer_WDAD: Coatom 98.5 9.9E-06 2.1E-10 92.5 21.9 224 598-841 28-259 (443)
311 PF15492 Nbas_N: Neuroblastoma 98.5 6.8E-05 1.5E-09 78.2 25.9 188 562-760 45-261 (282)
312 KOG2066 Vacuolar assembly/sort 98.5 3.6E-06 7.9E-11 97.4 18.1 183 602-804 39-234 (846)
313 KOG3914 WD repeat protein WDR4 98.5 1.1E-06 2.4E-11 94.5 12.9 156 605-761 65-226 (390)
314 PF02897 Peptidase_S9_N: Proly 98.5 0.00035 7.5E-09 80.0 34.1 243 563-810 126-411 (414)
315 cd00216 PQQ_DH Dehydrogenases 98.5 5E-05 1.1E-09 88.8 27.5 258 572-842 61-422 (488)
316 KOG2695 WD40 repeat protein [G 98.5 3.3E-07 7.2E-12 96.4 8.1 160 662-823 228-401 (425)
317 KOG1275 PAB-dependent poly(A) 98.5 4.9E-06 1.1E-10 97.2 18.2 175 660-842 149-340 (1118)
318 PF14583 Pectate_lyase22: Olig 98.5 0.00033 7.2E-09 77.2 31.3 268 567-841 42-378 (386)
319 KOG1832 HIV-1 Vpr-binding prot 98.5 8.6E-08 1.9E-12 110.4 3.5 200 592-808 1091-1296(1516)
320 COG3391 Uncharacterized conser 98.5 0.00023 4.9E-09 80.6 31.0 250 584-840 13-279 (381)
321 KOG0882 Cyclophilin-related pe 98.4 9.5E-07 2E-11 95.9 10.6 207 600-808 7-236 (558)
322 KOG1275 PAB-dependent poly(A) 98.4 3.8E-06 8.3E-11 98.0 16.0 181 571-757 146-341 (1118)
323 KOG2066 Vacuolar assembly/sort 98.4 7.2E-06 1.6E-10 95.0 17.5 183 560-759 39-234 (846)
324 PF08513 LisH: LisH; InterPro 98.4 3.5E-07 7.5E-12 61.5 3.7 27 10-36 1-27 (27)
325 PF06433 Me-amine-dh_H: Methyl 98.4 0.00024 5.1E-09 77.1 27.4 256 582-842 17-318 (342)
326 KOG2114 Vacuolar assembly/sort 98.4 4.9E-05 1.1E-09 88.8 23.0 205 609-818 30-260 (933)
327 cd00216 PQQ_DH Dehydrogenases 98.4 0.00033 7.2E-09 82.0 30.6 245 573-827 111-450 (488)
328 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00029 6.4E-09 72.2 25.6 143 572-719 23-167 (354)
329 KOG3621 WD40 repeat-containing 98.3 6.2E-05 1.3E-09 86.4 22.3 272 559-840 32-349 (726)
330 KOG3617 WD40 and TPR repeat-co 98.3 9.6E-06 2.1E-10 93.6 15.7 263 563-833 62-374 (1416)
331 COG0823 TolB Periplasmic compo 98.3 5E-05 1.1E-09 86.5 21.6 204 584-795 175-391 (425)
332 PF11768 DUF3312: Protein of u 98.3 0.00096 2.1E-08 76.0 30.3 90 751-842 237-327 (545)
333 KOG2114 Vacuolar assembly/sort 98.3 0.00027 5.8E-09 82.9 26.0 195 562-760 27-245 (933)
334 PF07433 DUF1513: Protein of u 98.3 0.00023 5E-09 76.3 23.8 193 647-842 6-245 (305)
335 KOG1920 IkappaB kinase complex 98.2 0.00014 3.1E-09 87.9 23.9 231 601-841 67-319 (1265)
336 PF00400 WD40: WD domain, G-be 98.2 4E-06 8.8E-11 61.6 6.8 38 551-588 2-39 (39)
337 PF08596 Lgl_C: Lethal giant l 98.2 0.00014 2.9E-09 82.2 21.8 260 562-834 3-326 (395)
338 PF00400 WD40: WD domain, G-be 98.2 4.6E-06 9.9E-11 61.3 6.5 39 592-630 1-39 (39)
339 KOG2695 WD40 repeat protein [G 98.2 5.5E-06 1.2E-10 87.5 9.2 156 566-727 217-386 (425)
340 COG0823 TolB Periplasmic compo 98.2 7.8E-05 1.7E-09 84.9 19.1 189 638-831 185-386 (425)
341 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.00024 5.3E-09 72.8 19.6 151 651-805 16-167 (354)
342 KOG3617 WD40 and TPR repeat-co 98.1 3.1E-05 6.7E-10 89.6 14.8 261 564-842 19-331 (1416)
343 COG3391 Uncharacterized conser 98.1 0.00071 1.5E-08 76.6 25.9 220 563-785 76-310 (381)
344 PRK02888 nitrous-oxide reducta 98.1 0.00022 4.8E-09 82.9 21.6 179 568-748 200-450 (635)
345 PF06977 SdiA-regulated: SdiA- 98.1 0.0018 3.8E-08 68.4 26.7 200 553-755 14-247 (248)
346 PF00780 CNH: CNH domain; Int 98.1 0.002 4.4E-08 69.2 27.9 225 570-810 5-262 (275)
347 PF04053 Coatomer_WDAD: Coatom 98.1 0.00041 9E-09 79.4 23.2 221 558-803 30-262 (443)
348 PF06433 Me-amine-dh_H: Methyl 98.1 0.0031 6.7E-08 68.6 28.4 239 565-812 40-329 (342)
349 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.003 6.5E-08 74.5 29.5 186 572-761 69-336 (527)
350 KOG1008 Uncharacterized conser 98.0 2.6E-06 5.7E-11 96.1 3.0 197 561-759 57-276 (783)
351 PF06977 SdiA-regulated: SdiA- 98.0 0.0016 3.5E-08 68.8 23.2 199 640-841 16-247 (248)
352 PF11768 DUF3312: Protein of u 98.0 0.00095 2.1E-08 76.1 22.5 114 645-760 205-331 (545)
353 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0036 7.8E-08 70.2 27.5 229 560-793 42-347 (353)
354 PF03178 CPSF_A: CPSF A subuni 98.0 0.0031 6.7E-08 69.6 26.6 214 582-800 2-262 (321)
355 PF03178 CPSF_A: CPSF A subuni 98.0 0.0013 2.7E-08 72.8 23.5 208 625-840 3-261 (321)
356 PF08596 Lgl_C: Lethal giant l 98.0 0.0015 3.3E-08 73.8 24.2 207 549-758 75-335 (395)
357 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.018 3.9E-07 67.9 33.4 149 572-722 120-338 (527)
358 PF04841 Vps16_N: Vps16, N-ter 97.9 0.015 3.3E-07 66.4 30.9 208 566-785 34-271 (410)
359 PF00780 CNH: CNH domain; Int 97.9 0.0044 9.5E-08 66.6 25.2 215 612-842 5-253 (275)
360 KOG3621 WD40 repeat-containing 97.9 0.0014 3.1E-08 75.6 21.7 139 507-665 41-188 (726)
361 PF02897 Peptidase_S9_N: Proly 97.8 0.011 2.3E-07 67.8 28.4 220 605-827 126-383 (414)
362 KOG1008 Uncharacterized conser 97.8 6.6E-06 1.4E-10 93.0 1.4 197 603-803 57-275 (783)
363 COG3386 Gluconolactonase [Carb 97.8 0.0082 1.8E-07 65.6 25.0 219 607-833 29-274 (307)
364 COG5276 Uncharacterized conser 97.8 0.077 1.7E-06 56.0 31.7 270 561-842 87-367 (370)
365 PF08553 VID27: VID27 cytoplas 97.6 0.006 1.3E-07 73.7 22.9 142 614-758 493-647 (794)
366 PRK10115 protease 2; Provision 97.6 0.1 2.2E-06 63.8 33.9 238 563-808 129-399 (686)
367 PF05694 SBP56: 56kDa selenium 97.6 0.055 1.2E-06 60.5 28.2 221 571-793 86-393 (461)
368 COG3386 Gluconolactonase [Carb 97.6 0.017 3.7E-07 63.1 23.9 219 566-794 30-276 (307)
369 PF14583 Pectate_lyase22: Olig 97.6 0.02 4.3E-07 63.6 24.1 242 588-835 16-303 (386)
370 PRK13616 lipoprotein LpqB; Pro 97.6 0.0082 1.8E-07 71.4 22.6 208 581-799 328-564 (591)
371 KOG1897 Damage-specific DNA bi 97.6 0.31 6.8E-06 59.0 34.7 166 669-840 751-938 (1096)
372 PF04841 Vps16_N: Vps16, N-ter 97.5 0.035 7.5E-07 63.5 25.1 188 625-827 62-272 (410)
373 KOG4640 Anaphase-promoting com 97.4 0.00068 1.5E-08 77.3 9.9 95 560-655 20-115 (665)
374 COG3490 Uncharacterized protei 97.4 0.028 6.1E-07 59.0 20.2 231 564-801 71-346 (366)
375 KOG1897 Damage-specific DNA bi 97.3 0.36 7.7E-06 58.5 31.5 276 560-840 530-894 (1096)
376 PRK13616 lipoprotein LpqB; Pro 97.3 0.029 6.3E-07 66.8 23.0 186 644-839 348-563 (591)
377 PF05096 Glu_cyclase_2: Glutam 97.3 0.19 4.2E-06 53.1 26.2 194 593-794 34-251 (264)
378 PF15390 DUF4613: Domain of un 97.2 0.06 1.3E-06 61.8 23.0 145 561-706 57-220 (671)
379 PRK10115 protease 2; Provision 97.2 0.31 6.8E-06 59.5 30.9 199 603-810 127-353 (686)
380 KOG4499 Ca2+-binding protein R 97.2 0.07 1.5E-06 54.6 20.6 207 615-824 28-263 (310)
381 PF08553 VID27: VID27 cytoplas 97.2 0.021 4.5E-07 69.2 19.8 139 660-802 496-646 (794)
382 PRK13684 Ycf48-like protein; P 97.1 0.61 1.3E-05 51.9 29.9 270 560-842 45-329 (334)
383 KOG4441 Proteins containing BT 97.1 0.025 5.3E-07 67.4 19.6 229 571-808 284-551 (571)
384 KOG4441 Proteins containing BT 97.0 0.023 5E-07 67.6 18.5 207 625-837 302-534 (571)
385 PF10647 Gmad1: Lipoprotein Lp 97.0 0.15 3.3E-06 54.3 23.0 189 647-838 25-231 (253)
386 PF14727 PHTB1_N: PTHB1 N-term 97.0 0.93 2E-05 51.6 31.9 260 572-840 37-356 (418)
387 KOG2395 Protein involved in va 97.0 0.018 3.8E-07 64.9 15.6 134 698-834 344-491 (644)
388 smart00320 WD40 WD40 repeats. 96.9 0.0023 4.9E-08 44.5 5.4 37 552-588 4-40 (40)
389 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.19 4.2E-06 57.0 23.2 88 565-654 6-117 (415)
390 smart00667 LisH Lissencephaly 96.9 0.0014 3.1E-08 46.2 4.1 31 9-39 3-33 (34)
391 PF14870 PSII_BNR: Photosynthe 96.9 0.84 1.8E-05 49.8 27.0 268 560-841 16-301 (302)
392 smart00320 WD40 WD40 repeats. 96.9 0.0031 6.8E-08 43.7 5.8 39 592-630 2-40 (40)
393 PF07995 GSDH: Glucose / Sorbo 96.9 0.86 1.9E-05 50.6 27.9 232 563-798 4-330 (331)
394 PHA02713 hypothetical protein; 96.8 0.066 1.4E-06 63.8 20.1 217 583-808 273-538 (557)
395 COG3490 Uncharacterized protei 96.8 0.081 1.8E-06 55.6 17.6 170 654-835 44-246 (366)
396 COG3204 Uncharacterized protei 96.8 0.33 7E-06 51.7 22.2 191 556-748 81-302 (316)
397 PF05096 Glu_cyclase_2: Glutam 96.8 0.8 1.7E-05 48.6 25.1 179 646-833 45-249 (264)
398 COG1520 FOG: WD40-like repeat 96.8 1.4 3.1E-05 49.6 29.7 193 571-771 68-278 (370)
399 KOG4640 Anaphase-promoting com 96.8 0.0056 1.2E-07 70.1 9.5 92 603-697 21-115 (665)
400 PLN00033 photosystem II stabil 96.7 1.5 3.3E-05 49.8 34.8 147 691-841 242-396 (398)
401 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.049 1.1E-06 49.7 13.7 101 563-671 2-109 (111)
402 KOG2395 Protein involved in va 96.7 0.034 7.3E-07 62.8 15.1 142 656-802 344-499 (644)
403 COG5276 Uncharacterized conser 96.7 0.93 2E-05 48.2 24.2 195 601-804 85-286 (370)
404 PF07995 GSDH: Glucose / Sorbo 96.6 0.9 2E-05 50.4 25.8 232 604-839 3-330 (331)
405 COG3204 Uncharacterized protei 96.6 0.35 7.6E-06 51.4 20.6 160 598-759 81-264 (316)
406 PHA02713 hypothetical protein; 96.6 0.13 2.8E-06 61.4 19.8 178 658-842 304-531 (557)
407 KOG2444 WD40 repeat protein [G 96.6 0.0025 5.3E-08 64.9 4.4 140 616-759 32-178 (238)
408 PF14870 PSII_BNR: Photosynthe 96.5 0.4 8.6E-06 52.3 21.5 203 546-755 89-301 (302)
409 PF02333 Phytase: Phytase; In 96.4 0.84 1.8E-05 51.1 23.7 188 570-760 66-292 (381)
410 TIGR03074 PQQ_membr_DH membran 96.4 0.92 2E-05 55.8 25.8 225 572-808 194-482 (764)
411 COG4257 Vgb Streptogramin lyas 96.3 1.4 2.9E-05 46.6 22.7 243 563-811 64-313 (353)
412 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.24 5.2E-06 45.3 15.0 100 648-753 2-109 (111)
413 TIGR03118 PEPCTERM_chp_1 conse 96.3 1.6 3.4E-05 47.0 23.2 197 563-760 25-281 (336)
414 PF05694 SBP56: 56kDa selenium 96.2 3.2 6.9E-05 46.9 30.9 220 613-833 86-392 (461)
415 TIGR02604 Piru_Ver_Nterm putat 96.1 2.2 4.8E-05 48.0 25.6 144 561-706 14-202 (367)
416 PF10647 Gmad1: Lipoprotein Lp 96.1 1.5 3.2E-05 46.8 22.8 140 604-748 25-184 (253)
417 PF14655 RAB3GAP2_N: Rab3 GTPa 96.0 1.9 4E-05 49.2 24.2 72 689-760 309-400 (415)
418 KOG2079 Vacuolar assembly/sort 96.0 0.059 1.3E-06 65.4 12.3 97 613-710 98-198 (1206)
419 KOG3630 Nuclear pore complex, 95.9 0.063 1.4E-06 65.4 12.3 140 563-705 103-261 (1405)
420 KOG2444 WD40 repeat protein [G 95.9 0.0098 2.1E-07 60.6 4.7 136 702-842 33-175 (238)
421 KOG4499 Ca2+-binding protein R 95.9 2.6 5.7E-05 43.5 22.3 215 572-792 27-273 (310)
422 KOG2079 Vacuolar assembly/sort 95.8 0.087 1.9E-06 64.0 12.5 71 559-631 129-202 (1206)
423 PHA03098 kelch-like protein; P 95.7 0.38 8.2E-06 57.1 17.9 156 658-819 343-527 (534)
424 KOG2377 Uncharacterized conser 95.7 1.3 2.8E-05 49.6 20.1 121 558-680 64-189 (657)
425 PF15390 DUF4613: Domain of un 95.6 0.5 1.1E-05 54.5 17.3 170 646-824 20-212 (671)
426 TIGR03074 PQQ_membr_DH membran 95.6 1.5 3.2E-05 54.0 22.5 67 660-726 262-353 (764)
427 KOG1898 Splicing factor 3b, su 95.6 9 0.00019 47.4 29.6 163 670-840 855-1044(1205)
428 PRK13684 Ycf48-like protein; P 95.5 1.4 3.1E-05 48.9 20.7 150 602-757 172-330 (334)
429 PLN02153 epithiospecifier prot 95.4 1.5 3.2E-05 48.8 20.5 176 658-836 86-325 (341)
430 KOG3630 Nuclear pore complex, 95.4 0.12 2.6E-06 63.1 12.0 144 604-748 102-262 (1405)
431 COG4257 Vgb Streptogramin lyas 95.4 2.7 5.9E-05 44.4 20.1 208 605-827 64-288 (353)
432 TIGR02604 Piru_Ver_Nterm putat 95.3 0.54 1.2E-05 53.0 16.8 146 688-835 14-204 (367)
433 COG1520 FOG: WD40-like repeat 95.3 6.7 0.00014 44.1 28.7 187 615-808 69-273 (370)
434 PF10214 Rrn6: RNA polymerase 95.2 8.2 0.00018 48.0 27.6 177 600-804 77-277 (765)
435 PF10168 Nup88: Nuclear pore c 95.1 1.3 2.9E-05 54.0 19.9 26 561-586 85-110 (717)
436 PHA03098 kelch-like protein; P 95.0 0.83 1.8E-05 54.2 17.8 182 571-760 294-513 (534)
437 PF10168 Nup88: Nuclear pore c 94.9 4.6 9.9E-05 49.4 23.9 94 603-719 85-181 (717)
438 smart00036 CNH Domain found in 94.7 8 0.00017 42.4 30.0 234 571-813 12-280 (302)
439 PLN00033 photosystem II stabil 94.6 11 0.00023 43.0 30.8 110 687-800 280-396 (398)
440 PF10214 Rrn6: RNA polymerase 94.4 18 0.00039 45.0 28.0 158 558-718 77-277 (765)
441 PF10433 MMS1_N: Mono-function 94.4 14 0.0003 43.6 28.2 244 569-824 219-503 (504)
442 PF03022 MRJP: Major royal jel 94.3 9.4 0.0002 41.5 23.4 165 669-833 35-254 (287)
443 PF12894 Apc4_WD40: Anaphase-p 94.3 0.12 2.6E-06 39.8 5.4 33 560-593 11-43 (47)
444 PF12234 Rav1p_C: RAVE protein 94.3 1.6 3.6E-05 51.9 17.4 124 550-676 19-156 (631)
445 PHA02790 Kelch-like protein; P 93.9 1.4 3E-05 51.6 16.1 142 571-720 271-426 (480)
446 KOG1896 mRNA cleavage and poly 93.9 22 0.00047 44.9 25.7 168 669-841 1005-1210(1366)
447 KOG1916 Nuclear protein, conta 93.8 0.036 7.9E-07 65.8 2.6 163 555-722 127-328 (1283)
448 COG3292 Predicted periplasmic 93.7 3.2 6.9E-05 48.0 17.5 268 561-840 165-443 (671)
449 TIGR03548 mutarot_permut cycli 93.7 8.5 0.00018 42.4 21.2 101 658-760 73-196 (323)
450 PF10395 Utp8: Utp8 family; I 93.7 14 0.00031 44.3 23.5 123 683-808 125-264 (670)
451 PHA02790 Kelch-like protein; P 93.5 3.7 8E-05 48.1 18.7 144 658-808 319-475 (480)
452 PLN02153 epithiospecifier prot 93.5 15 0.00032 40.8 22.7 62 571-635 32-112 (341)
453 PF14781 BBS2_N: Ciliary BBSom 93.5 2.3 5.1E-05 40.2 13.4 118 606-725 2-133 (136)
454 PLN02193 nitrile-specifier pro 93.4 20 0.00043 41.9 28.4 171 658-835 176-387 (470)
455 KOG2280 Vacuolar assembly/sort 93.4 6.3 0.00014 47.1 19.5 174 582-760 64-248 (829)
456 COG5167 VID27 Protein involved 93.3 1 2.2E-05 51.1 12.5 142 656-803 478-632 (776)
457 PF12234 Rav1p_C: RAVE protein 93.3 1.9 4.1E-05 51.4 15.7 72 603-675 30-103 (631)
458 COG3823 Glutamine cyclotransfe 93.2 3.1 6.7E-05 42.3 14.5 176 613-792 55-247 (262)
459 PRK10350 hypothetical protein; 93.1 0.31 6.7E-06 44.6 6.8 27 69-95 22-49 (145)
460 PLN02193 nitrile-specifier pro 93.1 12 0.00027 43.6 22.2 192 613-810 175-417 (470)
461 KOG1916 Nuclear protein, conta 93.0 0.065 1.4E-06 63.8 2.9 97 581-679 110-216 (1283)
462 COG1506 DAP2 Dipeptidyl aminop 93.0 27 0.00059 42.3 26.0 147 556-707 55-235 (620)
463 PRK14131 N-acetylneuraminic ac 92.9 11 0.00023 42.7 20.6 13 669-681 190-202 (376)
464 KOG2247 WD40 repeat-containing 92.8 0.033 7E-07 62.4 0.2 148 604-754 36-184 (615)
465 PF14761 HPS3_N: Hermansky-Pud 92.8 5 0.00011 41.2 15.7 141 615-758 29-214 (215)
466 TIGR03547 muta_rot_YjhT mutatr 92.7 16 0.00034 40.6 21.6 41 796-836 291-332 (346)
467 PF14727 PHTB1_N: PTHB1 N-term 92.7 22 0.00048 40.7 30.5 269 511-805 37-362 (418)
468 PF08728 CRT10: CRT10; InterP 92.6 3.4 7.5E-05 49.8 16.4 101 657-757 113-245 (717)
469 COG1506 DAP2 Dipeptidyl aminop 92.5 22 0.00047 43.2 23.8 146 598-748 55-234 (620)
470 TIGR03118 PEPCTERM_chp_1 conse 92.5 18 0.00039 39.1 20.9 194 647-842 24-277 (336)
471 PF11498 Activator_LAG-3: Tran 92.5 0.036 7.7E-07 59.1 0.0 13 122-134 372-384 (468)
472 KOG2377 Uncharacterized conser 92.5 1.6 3.5E-05 48.9 12.5 104 728-833 65-172 (657)
473 TIGR01063 gyrA DNA gyrase, A s 92.5 36 0.00078 42.5 27.5 261 566-831 490-794 (800)
474 PF12894 Apc4_WD40: Anaphase-p 92.3 0.41 8.9E-06 36.8 5.6 31 602-632 11-41 (47)
475 PF10395 Utp8: Utp8 family; I 92.1 34 0.00073 41.2 26.2 158 601-760 128-307 (670)
476 PF13449 Phytase-like: Esteras 92.0 23 0.00049 39.2 22.9 189 646-836 20-310 (326)
477 TIGR03548 mutarot_permut cycli 92.0 11 0.00024 41.4 19.1 107 571-680 72-198 (323)
478 PRK05560 DNA gyrase subunit A; 91.9 42 0.00091 42.0 28.5 256 567-826 493-793 (805)
479 COG1770 PtrB Protease II [Amin 91.9 33 0.00073 40.9 24.7 200 604-808 130-353 (682)
480 COG5290 IkappaB kinase complex 91.9 4.7 0.0001 48.2 15.8 101 691-795 250-358 (1243)
481 COG3823 Glutamine cyclotransfe 91.7 4.9 0.00011 40.9 13.8 170 658-832 56-247 (262)
482 PF10433 MMS1_N: Mono-function 91.7 33 0.00072 40.4 28.5 226 611-841 219-473 (504)
483 KOG4369 RTK signaling protein 91.5 0.15 3.2E-06 62.0 3.5 6 280-285 2018-2023(2131)
484 PRK05560 DNA gyrase subunit A; 91.5 36 0.00079 42.5 24.4 226 611-840 495-768 (805)
485 KOG1983 Tomosyn and related SN 91.3 4.4 9.4E-05 51.5 16.4 228 562-807 37-268 (993)
486 KOG2280 Vacuolar assembly/sort 91.2 5.9 0.00013 47.3 15.9 167 668-840 64-242 (829)
487 PRK14131 N-acetylneuraminic ac 91.2 15 0.00032 41.5 19.4 39 797-835 314-353 (376)
488 TIGR03547 muta_rot_YjhT mutatr 91.2 28 0.00061 38.6 21.6 24 613-636 63-97 (346)
489 KOG2247 WD40 repeat-containing 91.1 0.023 5.1E-07 63.5 -3.3 141 690-837 37-181 (615)
490 PF14781 BBS2_N: Ciliary BBSom 90.8 6.5 0.00014 37.3 12.9 111 693-808 4-130 (136)
491 PF14761 HPS3_N: Hermansky-Pud 90.7 18 0.00038 37.3 17.0 102 658-760 29-165 (215)
492 COG5167 VID27 Protein involved 90.3 6.3 0.00014 45.0 14.4 142 613-759 478-633 (776)
493 PF07569 Hira: TUP1-like enhan 90.0 1.7 3.7E-05 45.2 9.5 66 695-760 18-97 (219)
494 PF02333 Phytase: Phytase; In 90.0 38 0.00083 38.2 23.2 180 659-842 69-288 (381)
495 TIGR03606 non_repeat_PQQ dehyd 89.9 44 0.00095 38.7 32.2 56 559-614 28-90 (454)
496 PF05935 Arylsulfotrans: Aryls 89.8 46 0.001 38.9 24.3 144 580-729 126-313 (477)
497 PRK13613 lipoprotein LpqB; Pro 89.8 50 0.0011 39.8 22.5 190 647-838 364-576 (599)
498 PF08728 CRT10: CRT10; InterP 89.6 7.1 0.00015 47.2 15.2 158 513-675 53-245 (717)
499 PF13449 Phytase-like: Esteras 89.4 39 0.00084 37.4 23.1 191 603-795 20-309 (326)
500 PF07250 Glyoxal_oxid_N: Glyox 89.4 6.6 0.00014 41.5 13.2 172 667-842 8-197 (243)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.9e-44 Score=369.17 Aligned_cols=308 Identities=24% Similarity=0.390 Sum_probs=277.7
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEec
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~ 589 (842)
....+++|+-|.++++|+.... ....+.++|...|.|++|+|||+.||+|+.||.|++||.
T Consensus 126 ~g~~l~tGsGD~TvR~WD~~Te-------------------Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 126 TGSRLVTGSGDTTVRLWDLDTE-------------------TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CCceEEecCCCceEEeeccCCC-------------------CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 3478899999999999965433 346788999999999999999999999999999999999
Q ss_pred CCCeEE-EEeccCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEE
Q 003177 590 ESFTVK-STLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 663 (842)
Q Consensus 590 ~t~~~~-~~l~~h~~~I~~l~fsp-----dg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llas 663 (842)
++++.+ ..+.+|...|++++|.| ..++|++++.||.|+|||+..+. ++..+.+|+.+|+|+.|-- ..++++
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG--~gliyS 263 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGG--EGLIYS 263 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcC--CceEEe
Confidence 998776 77899999999999976 57799999999999999998754 5889999999999999984 459999
Q ss_pred EeCCCcEEEEECCCCceeeEEeecC-CeeEEEEe-----------CCCC-------------------------EEEEEE
Q 003177 664 CDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQ-----------PRLG-------------------------RILAAA 706 (842)
Q Consensus 664 gs~Dg~I~vwDl~t~~~i~~~~~~~-~i~~v~~s-----------p~g~-------------------------~l~~~s 706 (842)
++.|++|++|+...|++.+.++.+. .|+.++.+ |.++ .+++++
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 9999999999999999998888644 36666555 3333 499999
Q ss_pred cCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003177 707 IENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 784 (842)
Q Consensus 707 ~dg~I~IwDl~t~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spd 784 (842)
.|..+.+|+.... +++....+|...|+.+.|+||+++|++++ |..|++||-+++ +.+..+.+|-..|+.++|+.|
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---k~lasfRGHv~~VYqvawsaD 420 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---KFLASFRGHVAAVYQVAWSAD 420 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---chhhhhhhccceeEEEEeccC
Confidence 9999999997654 68889999999999999999999999999 999999999999 889999999999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 785 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 785 g~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.+.|++++.|.++++||+++.++. .+.+|.+.|.++.|+|||..+++|+.|..++||.
T Consensus 421 sRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 421 SRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999987 7889999999999999999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-42 Score=356.51 Aligned_cols=289 Identities=24% Similarity=0.380 Sum_probs=265.9
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 551 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
++-..+.||.++|.|+.|+|+|+.||+|+.|.++++||+.+..+..+.++|...|.||+|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeEeecCccceEEEEEcCC----CCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEE
Q 003177 631 TENPDYSLRTFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA 705 (842)
Q Consensus 631 l~t~~~~i~~~~~h~~~V~sl~fspd----g~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~ 705 (842)
..++....+.+.+|...|++++|.|- ...+|++++.||.|+|||+..+.++..+.. ...|+|++|-.+ ++++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence 99999888999999999999999873 234788999999999999999999988875 557999999765 789999
Q ss_pred EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc-----------CCCC-------------------------EEEEEe-
Q 003177 706 AIENYISILDVETQVCRLKLQGHKNQVHSVCWN-----------TSGE-------------------------YLASVS- 748 (842)
Q Consensus 706 s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~s-----------pdg~-------------------------~Lasgs- 748 (842)
+.|++|++|+...|.+...+++|...|+.++.+ |.++ .|++|+
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999999999999998876 2233 489999
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCC
Q 003177 749 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG 827 (842)
Q Consensus 749 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~ 827 (842)
|.++.+|+-.... +++....+|...|+.+.|+||+++|++++.|..|++||.++|+.+ .+.+|-+.|..++|+.|.+
T Consensus 345 d~tlflW~p~~~k--kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 345 DFTLFLWNPFKSK--KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred CceEEEecccccc--cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 7799999976542 688889999999999999999999999999999999999999988 7889999999999999999
Q ss_pred EEEEEeCCCcEEEcC
Q 003177 828 MVASASHDKCVKIWK 842 (842)
Q Consensus 828 ~Lasgs~DG~V~IWd 842 (842)
+|++|+.|.+++|||
T Consensus 423 LlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWD 437 (480)
T ss_pred EEEEcCCCceEEEEE
Confidence 999999999999996
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.6e-41 Score=352.53 Aligned_cols=287 Identities=26% Similarity=0.423 Sum_probs=267.3
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEE
Q 003177 551 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 628 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~I 628 (842)
..+..--|-+.+|..|.||.|++.||||+.+|.++||+..+...+.+|.+|...|.++.|+|. +..||||+.||+|++
T Consensus 166 ~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 166 ELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKL 245 (459)
T ss_pred hhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceee
Confidence 334444577889999999999999999999999999999999999999999999999999996 678999999999999
Q ss_pred EEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEc
Q 003177 629 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI 707 (842)
Q Consensus 629 WDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~ 707 (842)
|++++. .++..+.+|...|..++|+|+|. +|++++.|.+-++||++++..+..... ..+|.+++|.++|..+++|+.
T Consensus 246 w~~~~e-~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl 323 (459)
T KOG0272|consen 246 WKLSQE-TPLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL 323 (459)
T ss_pred eccCCC-cchhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc
Confidence 999975 46889999999999999999988 666999999999999999887666554 567999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-CC
Q 003177 708 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TF 785 (842)
Q Consensus 708 dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~sp-dg 785 (842)
|..-+|||++++.++..+.+|...|.+|+|+|+|..|++|+ |++++|||++.. .+++.+..|.+.|+.|.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEecccCC
Confidence 99999999999999999999999999999999999999999 999999999987 67999999999999999998 78
Q ss_pred CEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 786 PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 786 ~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.+|++++.|++++||...+..++ .+.+|++.|.++.+++|+.+|+|++.|.++++|.
T Consensus 401 ~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 89999999999999999999988 7889999999999999999999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.9e-38 Score=316.86 Aligned_cols=292 Identities=18% Similarity=0.321 Sum_probs=264.6
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 003177 548 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 627 (842)
Q Consensus 548 ~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~ 627 (842)
..+..-++|+||.++|.++.|++|.++|++++.||.+.|||.-+...+..+.-....|..++|+|.++++|.|+-|+.+.
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred eeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 44556689999999999999999999999999999999999999999989988999999999999999999999999999
Q ss_pred EEEcCCC--C---ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeC-CCC
Q 003177 628 VWDTENP--D---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP-RLG 700 (842)
Q Consensus 628 IWDl~t~--~---~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp-~g~ 700 (842)
||++.+. + ...+.+.+|.+.+.|+.|-+|+ .|++++.|.++.+||+++++.+..|.. .+.|.++.++| +++
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 9999854 2 2356789999999999999864 355899999999999999999999985 45699999999 999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003177 701 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 779 (842)
Q Consensus 701 ~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 779 (842)
.+++|+.|+..++||++.+.++..|.+|...|++|+|.|+|.-+++|+ |++.++||++.... ..+........+|+++
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGITSV 279 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCceeE
Confidence 999999999999999999999999999999999999999999999999 89999999998732 2223333345789999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 780 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 780 ~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+|+..|++|++|..|.++.+||.-.++.+ .+.+|++.|+++..+|||..|+||+.|.+|+||.
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999998888877 8889999999999999999999999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-38 Score=333.37 Aligned_cols=272 Identities=25% Similarity=0.369 Sum_probs=253.3
Q ss_pred cccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC--CCEEEEEECCCc
Q 003177 506 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKK 583 (842)
Q Consensus 506 ~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpd--g~~Lasgs~Dg~ 583 (842)
.+...+..+++||+++.+++|.+++. ..+.+|+||++.|.++.|+|. +..||||+.||+
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~-------------------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt 242 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQC-------------------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGT 242 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCc-------------------ceeEEEeccccceeeEEEccCCCccceeeeccCCc
Confidence 34445578999999999999976554 357899999999999999996 668999999999
Q ss_pred EEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEE
Q 003177 584 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 663 (842)
Q Consensus 584 I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llas 663 (842)
|++|++++..++..+.+|...|..++|+|+|++|+|+|.|.+-++||++++.. +....||+..|.+|+|++||. ++++
T Consensus 243 vklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGS-L~~t 320 (459)
T KOG0272|consen 243 VKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGS-LAAT 320 (459)
T ss_pred eeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCCc-eeec
Confidence 99999999999999999999999999999999999999999999999998764 677789999999999999987 8889
Q ss_pred EeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcC-CC
Q 003177 664 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT-SG 741 (842)
Q Consensus 664 gs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~sp-dg 741 (842)
|+.|..-+|||+++++++..+.. ...|..|.|+|+|-.+++|+.|++++|||++...++..+.+|.+-|+.|+|+| .|
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred cCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCC
Confidence 99999999999999999999985 45799999999999999999999999999999999999999999999999998 78
Q ss_pred CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 742 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 801 (842)
Q Consensus 742 ~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwd 801 (842)
.+|++++ |++++||..++. .++..+.+|++.|.++.+++++.+|++++.|.++++|.
T Consensus 401 ~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 8999999 999999999888 88999999999999999999999999999999999995
No 6
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.6e-36 Score=305.18 Aligned_cols=288 Identities=23% Similarity=0.432 Sum_probs=263.6
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 552 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~-t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
.+..+.+|++.|+++.|+|+|.+||+|+.|..|.+|++. ..+....+++|++.|..+.|.+|++.|++++.|++|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 456678999999999999999999999999999999954 4455677889999999999999999999999999999999
Q ss_pred cCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCe
Q 003177 631 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 710 (842)
Q Consensus 631 l~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~ 710 (842)
+++++. ++.+.+|...|++++-+.-|..++++++.||++++||+++..+++++.....++++.|...+..+++|+-|+.
T Consensus 119 ~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 999774 8889999999999997778888999999999999999999999999988899999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-eeEEEeecCC----CceEEEEEeCC
Q 003177 711 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTG----NKFHSCVFHPT 784 (842)
Q Consensus 711 I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~-~~i~~~~~~~----~~I~sv~~spd 784 (842)
|++||++.....+.+.+|...|+.+..+++|.++.+-+ |.+|++||++..... .++..+.++. .....|+|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 99999999999999999999999999999999999998 999999999875443 3577776654 33567899999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 785 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 785 g~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
+.++-+|+.|..+++||.....++ .+.+|.+.|+++.|+|...+|.+|+.|.+|++
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999886655 89999999999999999999999999999976
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.8e-34 Score=308.14 Aligned_cols=339 Identities=18% Similarity=0.316 Sum_probs=285.4
Q ss_pred CcccccCCcccCCCceEEeccCCCceEEeecCCC------------------------------CCCCcccccccccCCC
Q 003177 498 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD------------------------------ADPRDRVGRSAEVGKG 547 (842)
Q Consensus 498 ~~~~~~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~------------------------------~~~~~~~~~~~~~~~g 547 (842)
+.+.+....+.+...++++|...++|++|..... .++++++++.+.+++|
T Consensus 58 H~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG 137 (603)
T KOG0318|consen 58 HAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG 137 (603)
T ss_pred ccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCC
Confidence 4555566667777789999999999999966652 2567889999999999
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 003177 548 FTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 626 (842)
Q Consensus 548 ~~~~~i~~l~gH~~~V~sv~fSpdg~-~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 626 (842)
... ..+.||...|.+|+|-|... +++||+.|+.|.+|.-...+...++..|...|.|++|+|||+++++++.||+|
T Consensus 138 ~Sv---Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki 214 (603)
T KOG0318|consen 138 NSV---GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI 214 (603)
T ss_pred Ccc---ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence 874 45679999999999999766 59999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCceeeEee---cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-----------------
Q 003177 627 RVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----------------- 686 (842)
Q Consensus 627 ~IWDl~t~~~~i~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~----------------- 686 (842)
.|||-.+++. +..+. +|.+.|.+++|+||+..++ +++.|.+++|||+.+.+++.++..
T Consensus 215 ~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~ 292 (603)
T KOG0318|consen 215 YIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH 292 (603)
T ss_pred EEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence 9999998775 55665 8999999999999988555 999999999999998876554332
Q ss_pred ---------------------------cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE-----------Ee--
Q 003177 687 ---------------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK-----------LQ-- 726 (842)
Q Consensus 687 ---------------------------~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~-----------l~-- 726 (842)
...|+++..++++.+|++++.||.|.-||..++..-.. +.
T Consensus 293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~ 372 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS 372 (603)
T ss_pred EEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec
Confidence 23478999999999999999999999999876432100 00
Q ss_pred ------------------------------------------------------------CC--------CCCEEEEEEc
Q 003177 727 ------------------------------------------------------------GH--------KNQVHSVCWN 738 (842)
Q Consensus 727 ------------------------------------------------------------~h--------~~~V~sl~~s 738 (842)
.+ .....+++++
T Consensus 373 ~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~ 452 (603)
T KOG0318|consen 373 ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS 452 (603)
T ss_pred CCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc
Confidence 00 0123568889
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EEccCCC
Q 003177 739 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDK 815 (842)
Q Consensus 739 pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~--~~~~h~~ 815 (842)
|++.++++|+ |+.|+||.+..... ........|..+|++++|+||+.+|+++...+.|.+||+.+.+.. .+.-|..
T Consensus 453 ~~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHta 531 (603)
T KOG0318|consen 453 PDGSEVAVGGQDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTA 531 (603)
T ss_pred CCCCEEEEecccceEEEEEecCCcc-cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeee
Confidence 9999999999 99999999987654 333345668999999999999999999999999999999998875 4557999
Q ss_pred CeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 816 LVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 816 ~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.|.+++|+|+..++|||+-|-+|.||+
T Consensus 532 kI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 532 KINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred eEEEEEeCCCceEEEeccccceEEEEE
Confidence 999999999999999999999999995
No 8
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.6e-34 Score=327.11 Aligned_cols=286 Identities=30% Similarity=0.531 Sum_probs=257.3
Q ss_pred EEEecC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003177 553 FQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 629 (842)
Q Consensus 553 i~~l~g-H~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 629 (842)
...+.+ |...|.|+.|+++|++|++++.|+.|++|+..+.+ ....+.+|...|.+++|+|+++++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 455545 48899999999999999999999999999998777 777788999999999999999999999999999999
Q ss_pred EcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec-CCeeEEEEeCCCCEEEEEEcC
Q 003177 630 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE 708 (842)
Q Consensus 630 Dl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~~v~~sp~g~~l~~~s~d 708 (842)
|+......++++.+|...|++++|+|++ .++++|+.|++|+|||+++++++..+..+ ..|++++|++++..+++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9966666789999999999999999999 68889999999999999999999999864 579999999999999999999
Q ss_pred CeEEEEECCCCe--EEEEEeCCCCC--EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc---eEEEE
Q 003177 709 NYISILDVETQV--CRLKLQGHKNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSCV 780 (842)
Q Consensus 709 g~I~IwDl~t~~--~~~~l~~h~~~--V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~---I~sv~ 780 (842)
+.|+|||+.++. +...+.++... +++++|+|++.+|+++. |+.+++||+..+ .++..+.+|... +.+..
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEeccc
Confidence 999999999998 66777776665 99999999999999999 889999999988 667777776664 44556
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccC-CCCeeEEEEeCCCCEEEEEe--CCCcEEEcC
Q 003177 781 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASAS--HDKCVKIWK 842 (842)
Q Consensus 781 ~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h-~~~V~sla~spdg~~Lasgs--~DG~V~IWd 842 (842)
.++.+.++++++.|+.|++||+.++..+ .+.+| ...|..+.+++...++++++ .|+.|++|+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 6889999999999999999999987766 78889 89999999999999999998 789999995
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-34 Score=288.49 Aligned_cols=284 Identities=21% Similarity=0.349 Sum_probs=245.8
Q ss_pred eEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEecC-----CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003177 551 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 624 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fSpd-g~~Lasgs~Dg~I~vwd~~-----t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 624 (842)
....++++|++.|+.++..+. ...|++++.|.+|.+|++. .|..++.+++|+..|..+..++||.+.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 345678999999999999986 5689999999999999864 4777899999999999999999999999999999
Q ss_pred eEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee---cCCeeEEEEeCC--C
Q 003177 625 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPR--L 699 (842)
Q Consensus 625 ~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~~v~~sp~--g 699 (842)
++++||+.++ ...+.|.+|...|.+++|++|.. -+++|+.|.+|++|++. +.|..++.. .+-|.|++|+|+ .
T Consensus 86 ~lrlWDl~~g-~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 86 TLRLWDLATG-ESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred eEEEEEecCC-cEEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCC
Confidence 9999999987 46889999999999999999966 56699999999999998 455555543 345999999998 6
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003177 700 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 778 (842)
Q Consensus 700 ~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~s 778 (842)
.+|+.++.|+.|++||+++.+....+.+|.+.++.++++|||.++++|+ ||.+.+||++.+ +++..+. +...|.+
T Consensus 163 p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~s 238 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVNS 238 (315)
T ss_pred cEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEee
Confidence 7899999999999999999999999999999999999999999999999 999999999988 5666655 6788999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEE-E----EccC-----CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 779 CVFHPTFPSLLVIGCYETLELWNMTENKTL-T----LSAH-----DKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 779 v~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~----~~~h-----~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++|+|+...|+.+. +..|+|||+.++.++ . +.+. .....+++|++||..|++|-.|+.|++|.
T Consensus 239 l~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 239 LCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 99999976655554 446999999998876 1 1122 22346789999999999999999999994
No 10
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.2e-33 Score=297.50 Aligned_cols=284 Identities=32% Similarity=0.539 Sum_probs=255.1
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003177 554 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 633 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t 633 (842)
..+.+|.+.|++++|+|++++|++++.||.|++|++.+++....+..|...+.++.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45779999999999999999999999999999999999888888889999999999999999999999999999999997
Q ss_pred CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEE
Q 003177 634 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYIS 712 (842)
Q Consensus 634 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~ 712 (842)
+. .+..+..|...|.++.|++++ .++++++.|+.|++||+++++....+. +...+.++.|+|++.++++++.++.|+
T Consensus 83 ~~-~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 GE-CVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred cc-ceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 54 466777898899999999984 477777789999999999888887777 455799999999988887777799999
Q ss_pred EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003177 713 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 791 (842)
Q Consensus 713 IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sg 791 (842)
+||+++++.+..+..|...|.+++|+|+++.+++++ |+.|++||++.+ ..+..+..+...+.++.|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 999999988888888999999999999998888888 999999999886 5666776788899999999998877777
Q ss_pred EcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 792 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 792 s~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|+|||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77999999999987766 5668889999999999999999999999999997
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5e-34 Score=282.60 Aligned_cols=268 Identities=19% Similarity=0.398 Sum_probs=243.9
Q ss_pred CEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-eeeEeecCccceEEE
Q 003177 573 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSL 651 (842)
Q Consensus 573 ~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~-~i~~~~~h~~~V~sl 651 (842)
-+|++++.|.+|++|...+|.+.+++...++.|+.+...|+++.||+++. -.|++||++++.. ++.++.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 47999999999999999999999999988899999999999999999875 4699999998765 889999999999999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeC-CCC
Q 003177 652 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HKN 730 (842)
Q Consensus 652 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~-h~~ 730 (842)
.|..+|+ .+++|++||+++|||++...+-+.+.+..+|+++..+|+...|+++..+|.|++||+....+...+.. ...
T Consensus 90 gF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 9999977 66699999999999999999999999999999999999999999999999999999998866665543 456
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-
Q 003177 731 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN- 805 (842)
Q Consensus 731 ~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~---~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~- 805 (842)
.|.++...|||.+|+++. .|..++|++-... ...++..+..|...+..|.++|++++|++++.|.+++||+.++-
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 899999999999999998 8999999997643 24567788999999999999999999999999999999999887
Q ss_pred eE-EEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 806 KT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 806 ~~-~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+. +.+.+|...+++++||.||+||+||+.|+.+++|+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 22 26789999999999999999999999999999997
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.5e-34 Score=296.71 Aligned_cols=289 Identities=20% Similarity=0.382 Sum_probs=265.5
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 003177 548 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 627 (842)
Q Consensus 548 ~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~ 627 (842)
.+++..+++.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.++++..++.+|-..|..+++++-..|+++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEE
Q 003177 628 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA 706 (842)
Q Consensus 628 IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s 706 (842)
+||++..+ .++.+.+|-..|.|++.+|.-+ +|++|+.|.+++|||+++...+.++. +...|..+.+.|....+++++
T Consensus 219 CwDLe~nk-vIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 219 CWDLEYNK-VIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred EEechhhh-hHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence 99999865 4899999999999999999855 77799999999999999999999888 567799999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003177 707 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 786 (842)
Q Consensus 707 ~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~ 786 (842)
.|++|++||++.++....+..|...|.+++.+|....+++++...|+-|++..+ ..+..+.+|..-|.++....|+
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc-
Confidence 999999999999999999999999999999999999999999778999999988 6777789999999999998887
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEE---------ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 787 SLLVIGCYETLELWNMTENKTLTL---------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 787 ~L~sgs~dg~I~Iwdl~~~~~~~~---------~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++++|+..|.|.+||.+++..... ...+..|.+.+|...|..|++|..|.+|++|+
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 588999999999999999865511 12356799999999999999999999999995
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-33 Score=300.76 Aligned_cols=293 Identities=20% Similarity=0.336 Sum_probs=249.5
Q ss_pred CCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEec---cCCCCeEEEEEcCCCCEEEEEeC
Q 003177 546 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSA 622 (842)
Q Consensus 546 ~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~---~h~~~I~~l~fspdg~~Latgs~ 622 (842)
.|.+|+...+++.|+.-|.|+.|+|||+++|+++.||+|.+||-.+++.+..+. +|.+.|.+|.|+||+..|+|++.
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence 466777888999999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred CCeEEEEEcCCCC------------------------------------------ceeeEeecCccceEEEEEcCCCCcE
Q 003177 623 DRTVRVWDTENPD------------------------------------------YSLRTFTGHSTTVMSLDFHPSKEDL 660 (842)
Q Consensus 623 Dg~I~IWDl~t~~------------------------------------------~~i~~~~~h~~~V~sl~fspdg~~l 660 (842)
|.+++|||+.+.+ .++..+.+|...|+++..++++. .
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~ 334 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-T 334 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-E
Confidence 9999999987543 12345668999999999999985 6
Q ss_pred EEEEeCCCcEEEEECCCCceee-------------------------------EEe------------------------
Q 003177 661 LCSCDNNSEIRYWSINNGSCAG-------------------------------VFK------------------------ 685 (842)
Q Consensus 661 lasgs~Dg~I~vwDl~t~~~i~-------------------------------~~~------------------------ 685 (842)
|++|+.||.|.-||+.++..-+ .+.
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 6699999999999987653210 000
Q ss_pred ---------------------------ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEEEEeCCCCCEEEEE
Q 003177 686 ---------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVC 736 (842)
Q Consensus 686 ---------------------------~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~--~~~~l~~h~~~V~sl~ 736 (842)
......+++++|++..+++|+.|+.|+||.+.... ....+..|.++|++++
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA 494 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE
Confidence 00113568899999999999999999999998754 3445667999999999
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-E-EEccC
Q 003177 737 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-L-TLSAH 813 (842)
Q Consensus 737 ~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~-~-~~~~h 813 (842)
|+||+.||+++. .+.|.+||+.+... .......|...|.+++|+|+...+++|+-|-.|.||+++.... + ...+|
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH 572 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH 572 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccc
Confidence 999999999999 99999999998743 4445556899999999999999999999999999999976543 3 45589
Q ss_pred CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 814 DKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 814 ~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
...|+.+.|- |...|++.+.|..|++|+
T Consensus 573 ~~gVn~v~wl-de~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 573 LGGVNSVAWL-DESTVVSSGQDANIKVWN 600 (603)
T ss_pred ccCceeEEEe-cCceEEeccCcceeEEec
Confidence 9899999996 556788999999999995
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=300.20 Aligned_cols=290 Identities=26% Similarity=0.462 Sum_probs=270.5
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003177 549 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 628 (842)
Q Consensus 549 ~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 628 (842)
.+.+...+.+|...|+.+-|+|+-.++++++.|++|++||..+++++..+++|.+.|.+|+|+..|++|++++.|-.+++
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 34456778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecC-CeeEEEEeCCCCEEEEEEc
Q 003177 629 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAI 707 (842)
Q Consensus 629 WDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-~i~~v~~sp~g~~l~~~s~ 707 (842)
||..+...+++...+|...|.+++|-|.|+ .+++|+.|.+|+.|++.++-|+.++..+. -+..+..+.||..+++++.
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 999876667888999999999999999986 55699999999999999999999998654 4888999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC---------------CCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003177 708 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTS---------------GEYLASVS-DELVRVWSIGSGSKGECIHELSC 771 (842)
Q Consensus 708 dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spd---------------g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 771 (842)
|.+|++|-+.++.+...+..|.-+|.|++|-|. +.++++++ |++|++||+.++ .|+.++.+
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~g 332 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVG 332 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEec
Confidence 999999999999999999999999999999762 24888888 999999999999 89999999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 772 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 772 ~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|.+.|..++|+|.|+||+++..|++|++||++++.++ .+..|..-|+++.|+.+..+++||+-|-++++|.
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999988 7789999999999999999999999999999994
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.9e-35 Score=308.61 Aligned_cols=277 Identities=21% Similarity=0.433 Sum_probs=248.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceee
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 639 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~ 639 (842)
...|..|.|.|+|+.|++|+..|.+.+|+..+......+..|+.+|.++.|++++.++++|+.+|.|++|+..-.. ++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH
Confidence 3469999999999999999999999999987776667778999999999999999999999999999999987543 44
Q ss_pred EeecC-ccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec-CCeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 640 TFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVE 717 (842)
Q Consensus 640 ~~~~h-~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~ 717 (842)
.+..| ...|.+++|+|+.. .|++|++||+|+|||....+....+..+ -.|.++.|+|..+.+++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 45555 49999999999755 6779999999999999988887777654 469999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCC
Q 003177 718 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYE 795 (842)
Q Consensus 718 t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg-~~L~sgs~dg 795 (842)
++.|+.++.+|+..|..+.|++++++|++++ |..+++||+++. +.+..+.+|...++++.|+|-. ..|.+|+.||
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 9999999999999999999999999999999 999999999966 6788889999999999999965 4677788999
Q ss_pred eEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 796 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 796 ~I~Iwdl~~~~~~--~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.|..|.+...+.+ .-.+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999855555 4458999999999999999999999999999994
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-33 Score=300.09 Aligned_cols=316 Identities=19% Similarity=0.290 Sum_probs=269.6
Q ss_pred ceEEeccCCCceEEeecCCCCCCCc---ccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRD---RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 588 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~---~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd 588 (842)
.++++|+.|...++|.......... .+.++.. +-..-...+..|++++|+.+|.+||+|+.||.++||+
T Consensus 192 ~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~--------~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~ 263 (524)
T KOG0273|consen 192 GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIR--------EGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWN 263 (524)
T ss_pred hhhhccCCccceeeeeehhhccccchhhhhhhhhh--------hhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEe
Confidence 4678899998999985554111100 0001110 0000012346799999999999999999999999999
Q ss_pred cCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCC
Q 003177 589 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 668 (842)
Q Consensus 589 ~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 668 (842)
. ++..+.++..|.++|.+|.|+.+|.||++++.|+++.+||..++.. ...+.-|..+-.++.|-.+. -|++++.|+
T Consensus 264 ~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-~q~f~~~s~~~lDVdW~~~~--~F~ts~td~ 339 (524)
T KOG0273|consen 264 K-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-KQQFEFHSAPALDVDWQSND--EFATSSTDG 339 (524)
T ss_pred c-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-EEeeeeccCCccceEEecCc--eEeecCCCc
Confidence 5 5678889999999999999999999999999999999999988664 66777788877889998654 477899999
Q ss_pred cEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC------
Q 003177 669 EIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG------ 741 (842)
Q Consensus 669 ~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg------ 741 (842)
.|+|+.+....++.++. |+++|.++.|.|.+..|++++.|++++||......+...+.+|...|..+.|+|+|
T Consensus 340 ~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~ 419 (524)
T KOG0273|consen 340 CIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNP 419 (524)
T ss_pred eEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCC
Confidence 99999999888888776 46789999999999999999999999999999999999999999999999999965
Q ss_pred ---CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCe
Q 003177 742 ---EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLV 817 (842)
Q Consensus 742 ---~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V 817 (842)
..+++++ |++|++||+..+ .+++.+..|..+|.+++|+|+|+++++|+.||.|.+|++++++++......+.|
T Consensus 420 ~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~I 496 (524)
T KOG0273|consen 420 NMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGI 496 (524)
T ss_pred cCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeE
Confidence 3567776 999999999998 899999999999999999999999999999999999999999999888888889
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 818 SSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 818 ~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
..++|+.+|.+|..+-.||.|++-|
T Consensus 497 fel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 497 FELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EEEEEcCCCCEEEEEecCCCceEEE
Confidence 9999999999999999999998754
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.1e-33 Score=273.66 Aligned_cols=289 Identities=22% Similarity=0.320 Sum_probs=250.7
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEec
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~ 589 (842)
..-++++++.|-+|+.|.... | .+.+++....+.|..+.+.||+++||+++. -.|++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~t----------------G---~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALT----------------G---ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhc----------------C---eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEc
Confidence 556889999999999994432 2 356777777888999999999999999886 58999999
Q ss_pred CCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC
Q 003177 590 ESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 667 (842)
Q Consensus 590 ~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 667 (842)
.+++ ++.++.+|+..|+.+.|..+|++++||++||+++|||++... ......|..+|+++..+|+...+| +|+.+
T Consensus 69 ~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLi-s~dqs 145 (311)
T KOG0315|consen 69 NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELI-SGDQS 145 (311)
T ss_pred cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEE-eecCC
Confidence 8765 589999999999999999999999999999999999999843 344555889999999999977555 99999
Q ss_pred CcEEEEECCCCceeeEEee--cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC------eEEEEEeCCCCCEEEEEEcC
Q 003177 668 SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ------VCRLKLQGHKNQVHSVCWNT 739 (842)
Q Consensus 668 g~I~vwDl~t~~~i~~~~~--~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~------~~~~~l~~h~~~V~sl~~sp 739 (842)
|.|++||+.+..+...+.. ...|.++.+.|+|..++++...|..++|++-+. +++..++.|.+.+..+.+||
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence 9999999998877666543 456899999999999999999999999998653 56778889999999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCe
Q 003177 740 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV 817 (842)
Q Consensus 740 dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V 817 (842)
|+++|++++ |.+++||++.+. .+....+.+|...+..|+|+.||.||++++.|+.+++||+..++.+ ...+|....
T Consensus 226 d~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~ 303 (311)
T KOG0315|consen 226 DVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAA 303 (311)
T ss_pred CCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccccc
Confidence 999999999 999999999876 3556678888999999999999999999999999999999999987 666888877
Q ss_pred eEEEEe
Q 003177 818 SSLAAS 823 (842)
Q Consensus 818 ~sla~s 823 (842)
.|++..
T Consensus 304 vc~~ln 309 (311)
T KOG0315|consen 304 VCVALN 309 (311)
T ss_pred EEEEee
Confidence 777754
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-33 Score=278.99 Aligned_cols=275 Identities=16% Similarity=0.281 Sum_probs=235.5
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEec
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~ 589 (842)
....+.+++.|..+-+|....+ ++..| ..++.+.||+..|..++.++||.+.++++.|+++++||+
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~d-----------d~~~G---~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSD-----------DIKYG---VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCceEEEcccceEEEEEEeccC-----------ccccC---ceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence 3567889999999999966655 12223 346788999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEee-cCccceEEEEEcCCC-CcEEEEEeCC
Q 003177 590 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSK-EDLLCSCDNN 667 (842)
Q Consensus 590 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~-~h~~~V~sl~fspdg-~~llasgs~D 667 (842)
.+++....|.+|...|.+++|++|.+.|++|+.|++|++|++..... ..... .+.+.|.|+.|+|+. +.+|++++.|
T Consensus 93 ~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D 171 (315)
T KOG0279|consen 93 ATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIVSASWD 171 (315)
T ss_pred cCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEEEccCC
Confidence 99999999999999999999999999999999999999999986432 33222 237899999999985 5688899999
Q ss_pred CcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 003177 668 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 746 (842)
Q Consensus 668 g~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Las 746 (842)
++|++||+++.+....+.. .+-++.++++|||...++|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+.
T Consensus 172 ktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~ 250 (315)
T KOG0279|consen 172 KTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCA 250 (315)
T ss_pred ceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEee
Confidence 9999999999888777765 4458999999999999999999999999999999988876 8889999999999999988
Q ss_pred EeCCeEEEEEcCCCCCceeEEEeec---------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 747 VSDELVRVWSIGSGSKGECIHELSC---------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 747 gsDg~I~IwDl~s~~~~~~i~~~~~---------~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
+.+..|+|||+.+. .++..+.. ......+++|+++|..|+++-.|+.|++|.+.
T Consensus 251 at~~sIkIwdl~~~---~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 251 ATATSIKIWDLESK---AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccCCceEEEeccch---hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 88888999999987 34433322 12345678999999999999999999999874
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.3e-33 Score=295.56 Aligned_cols=282 Identities=25% Similarity=0.441 Sum_probs=249.5
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEecCC--CeEE--EEec----------cCCCCeEEEEEcCCCCEE
Q 003177 553 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTES--FTVK--STLE----------EHTQWITDVRFSPSLSRL 617 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSpdg~-~Lasgs~Dg~I~vwd~~t--~~~~--~~l~----------~h~~~I~~l~fspdg~~L 617 (842)
++.++ |+.+|.+++|+|-.. +|++|+.|-..++|++.. .... ..|+ ..+..|++++|+.+|..|
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 45566 999999999999655 999999999999999874 1111 1111 133579999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCe-eEEEEe
Q 003177 618 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQ 696 (842)
Q Consensus 618 atgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i-~~v~~s 696 (842)
|+|+.||.++||+.... .+.++..|.++|.++.|+.+|.+ |++++.|+++.+||..++.....+..+... ..+.|-
T Consensus 251 atG~~~G~~riw~~~G~--l~~tl~~HkgPI~slKWnk~G~y-ilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDGN--LISTLGQHKGPIFSLKWNKKGTY-ILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred EEeecCcEEEEEecCch--hhhhhhccCCceEEEEEcCCCCE-EEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 99999999999998753 47888999999999999999885 459999999999999999999988876665 778887
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003177 697 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 775 (842)
Q Consensus 697 p~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 775 (842)
.+ ..|++++.|+.|+|+.+....++.++.+|.+.|.++.|+|.|.+|++++ |++++||+.... .+.+.+..|...
T Consensus 328 ~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hske 403 (524)
T KOG0273|consen 328 SN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSKE 403 (524)
T ss_pred cC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhccc
Confidence 76 6789999999999999999999999999999999999999999999999 999999998776 788899999999
Q ss_pred eEEEEEeCCCC---------EEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 776 FHSCVFHPTFP---------SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 776 I~sv~~spdg~---------~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|..+.|+|+|. .|++++.|++|++||+..+.++ .+..|..+|.+++|+|+|+++|+|+.||.|.||+
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 99999999763 5899999999999999999988 7779999999999999999999999999999995
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-31 Score=269.41 Aligned_cols=283 Identities=24% Similarity=0.436 Sum_probs=241.5
Q ss_pred eeEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEecCC---CeEEEEe-ccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003177 550 FTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES---FTVKSTL-EEHTQWITDVRFSPSLSRLATSSADR 624 (842)
Q Consensus 550 ~~~i~~l~gH~~~V~sv~fSpd-g~~Lasgs~Dg~I~vwd~~t---~~~~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg 624 (842)
+..++.+.+|++.|..++|+|- |..||+++.|+.|++|+... ..+...+ .+|+..|.+++|+|.|++|+++|.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567889999999999999997 88999999999999999884 4455455 47999999999999999999999999
Q ss_pred eEEEEEcCCCC-ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---ceeeEEee-cCCeeEEEEeCCC
Q 003177 625 TVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKC-QSGATQMRFQPRL 699 (842)
Q Consensus 625 ~I~IWDl~t~~-~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~---~~i~~~~~-~~~i~~v~~sp~g 699 (842)
++.||.-..+. .++.++.||...|.|++|+++|. +||+|+.|+.|.||.+..+ +|+..+.. ...|..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 99999876544 46788999999999999999977 7889999999999999754 45556653 4568999999999
Q ss_pred CEEEEEEcCCeEEEEECC---CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003177 700 GRILAAAIENYISILDVE---TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 775 (842)
Q Consensus 700 ~~l~~~s~dg~I~IwDl~---t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 775 (842)
..|+++++|++|++|+-. ...++.++.+|...|.+++|++.|..|++++ |++|+||...+. .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence 999999999999999876 3478999999999999999999999999999 999999986643 12235678
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCe------EE--EEccCCCCeeEEEEeCC-CCEEEEEeCCCcEEEcC
Q 003177 776 FHSCVFHPTFPSLLVIGCYETLELWNMTENK------TL--TLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK 842 (842)
Q Consensus 776 I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~------~~--~~~~h~~~V~sla~spd-g~~Lasgs~DG~V~IWd 842 (842)
++.+.|. ...|++++.|+.|++|...... ++ ....|+..|+++.|.|. ..+|++|++||.|++|.
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 8999998 4469999999999999766431 11 34478999999999995 67999999999999994
No 21
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-33 Score=293.94 Aligned_cols=291 Identities=20% Similarity=0.326 Sum_probs=245.0
Q ss_pred CCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC---CeEEEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 003177 546 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 622 (842)
Q Consensus 546 ~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t---~~~~~~l~~h~~~I~~l~fspdg~~Latgs~ 622 (842)
...+..+.+++..|+++|+-+.||++|+|||+++.|.+..+|.+.. .+..+++.+|..+|..+.|+||.++|++|+.
T Consensus 210 ~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~ 289 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF 289 (519)
T ss_pred ccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc
Confidence 3456677889999999999999999999999999999999998754 4457889999999999999999999999999
Q ss_pred CCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee--cCCeeEEEEeCCCC
Q 003177 623 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLG 700 (842)
Q Consensus 623 Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~~v~~sp~g~ 700 (842)
|..+.+||+.++......-.+|...+.+++|.|||.. +++|+.|+.|..||+.. ........ ...|.++++++||+
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred hHheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCc
Confidence 9999999999987633333445688999999999886 55999999999999984 33333332 24589999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc---e
Q 003177 701 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---F 776 (842)
Q Consensus 701 ~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~---I 776 (842)
++++.+.|..|++|+.++...+..+. ...+|++++.|.|++++++.- +..|++||+... ..+..+.+|.-. |
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFII 443 (519)
T ss_pred EEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEE
Confidence 99999999999999999876665444 456899999999999988776 899999999865 566666666532 3
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCC-CEEEEEeCCCcEEEcC
Q 003177 777 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 842 (842)
Q Consensus 777 ~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg-~~Lasgs~DG~V~IWd 842 (842)
.+|---.+..++++|+.|+.|+||+..+++++ .+.+|...|++++|+|.. .++|+|++||+|+||.
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 33333445589999999999999999999988 888999999999999965 5899999999999994
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-31 Score=295.98 Aligned_cols=322 Identities=20% Similarity=0.325 Sum_probs=260.4
Q ss_pred cccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 003177 506 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 585 (842)
Q Consensus 506 ~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~ 585 (842)
.+.+..++++.|. ...+.+|..+..... .-.+|...+++.+|...|+++.|+.|.++|++|+.|..++
T Consensus 103 ~fSPng~~fav~~-gn~lqiw~~P~~~~~-----------~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~r 170 (893)
T KOG0291|consen 103 KFSPNGKFFAVGC-GNLLQIWHAPGEIKN-----------EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSAR 170 (893)
T ss_pred EECCCCcEEEEEe-cceeEEEecCcchhc-----------ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEE
Confidence 3344446777664 367888866654321 2346777889999999999999999999999999999999
Q ss_pred EEecCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-----------------------CCc----
Q 003177 586 LWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----------------------PDY---- 636 (842)
Q Consensus 586 vwd~~t~~~--~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t-----------------------~~~---- 636 (842)
||+++..+. ...+.+|.+.|.++-|..+...++|.+.||.+.+|.++. ++.
T Consensus 171 l~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~ 250 (893)
T KOG0291|consen 171 LFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHK 250 (893)
T ss_pred EEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcc
Confidence 999987665 567889999999999999999999999999999998761 000
Q ss_pred -eee-----EeecCccc------------------------------------------eEEEEEcCCCCcEEEEEeCCC
Q 003177 637 -SLR-----TFTGHSTT------------------------------------------VMSLDFHPSKEDLLCSCDNNS 668 (842)
Q Consensus 637 -~i~-----~~~~h~~~------------------------------------------V~sl~fspdg~~llasgs~Dg 668 (842)
... .+...... |..+.|+..|+.+.+.|+.-|
T Consensus 251 ~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klg 330 (893)
T KOG0291|consen 251 IFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLG 330 (893)
T ss_pred eEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccc
Confidence 000 00111123 344444445555554555556
Q ss_pred cEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003177 669 EIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 747 (842)
Q Consensus 669 ~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasg 747 (842)
.+.||+..+...+.... |...+++++++|||..+++|+.||.|+|||..++-|..+|..|.+.|+.+.|+..|+.+++.
T Consensus 331 QLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 331 QLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred eEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence 77777776655554444 34569999999999999999999999999999999999999999999999999999999999
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEE-EEccCCCCeeEEEEe
Q 003177 748 S-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAHDKLVSSLAAS 823 (842)
Q Consensus 748 s-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~~spdg~~L~sgs~dg-~I~Iwdl~~~~~~-~~~~h~~~V~sla~s 823 (842)
+ ||+|+.||+... .+.+++... .....+++..|.|..+++|+.|. .|+||++.+|+++ .+.+|+++|.+++|+
T Consensus 411 SLDGtVRAwDlkRY---rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRY---RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS 487 (893)
T ss_pred ecCCeEEeeeeccc---ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc
Confidence 9 999999999877 667776654 34578889999999999988888 8999999999999 788999999999999
Q ss_pred CCCCEEEEEeCCCcEEEcC
Q 003177 824 TVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 824 pdg~~Lasgs~DG~V~IWd 842 (842)
|++..|+++|+|.+|++||
T Consensus 488 ~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 488 PDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred cccCeEEeccccceEEEEE
Confidence 9999999999999999997
No 23
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.4e-33 Score=301.91 Aligned_cols=290 Identities=20% Similarity=0.337 Sum_probs=253.3
Q ss_pred eEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEecCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003177 551 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 628 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fSp-dg~~Lasgs~Dg~I~vwd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 628 (842)
..+.++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 35778999999999999999 899999999999999999876 8999999999999999999999999999999999999
Q ss_pred EEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEc
Q 003177 629 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI 707 (842)
Q Consensus 629 WDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~ 707 (842)
||++++.+ +..+. ....++|+.|+|++.++|++|+.|+.|+.||+++++.+..+.. -+.|..+.|-+++..+++++.
T Consensus 285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999875 33333 3457899999999988999999999999999999998888764 467999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC--CceEEEEEeC
Q 003177 708 ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHP 783 (842)
Q Consensus 708 dg~I~IwDl~t~~~~~~l~~-h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~--~~I~sv~~sp 783 (842)
|+.++||+.+....+..+.. +.-...++..+|++.++++-+ |+.|.||.+...........+.+|. +.-..|.|||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 99999999998866554332 233567889999999999988 9999999987654434444555554 4567789999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCC-CEEEEEeCCCcEEEcC
Q 003177 784 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 842 (842)
Q Consensus 784 dg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg-~~Lasgs~DG~V~IWd 842 (842)
||.+|++|+.||.+.+||.++.+++ .+.+|...+..+.|+|.. ..+|||+.||.|+|||
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999888 788999999999999965 5899999999999997
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-31 Score=294.82 Aligned_cols=312 Identities=21% Similarity=0.342 Sum_probs=265.5
Q ss_pred ccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECC-CcEE
Q 003177 507 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAV 585 (842)
Q Consensus 507 l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~D-g~I~ 585 (842)
+...-.++++|=..+...++..+ .|..+..+.-...+|..++|+..|.+||.|+.. |.+.
T Consensus 273 fH~~t~~lvvgFssG~f~LyelP-------------------~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLl 333 (893)
T KOG0291|consen 273 FHKGTNLLVVGFSSGEFGLYELP-------------------DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLL 333 (893)
T ss_pred ccCCceEEEEEecCCeeEEEecC-------------------CceEEEEeecccceeeEEEecccCCEEEEcCCccceEE
Confidence 34444666666665555555332 235567777777889999999999999998865 7999
Q ss_pred EEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEe
Q 003177 586 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 665 (842)
Q Consensus 586 vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 665 (842)
||+..+...+....+|...|++++++|||.+||||+.||.|+|||...+ .|+.++..|+..|+.+.|+..+. .+++.+
T Consensus 334 VweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTFteHts~Vt~v~f~~~g~-~llssS 411 (893)
T KOG0291|consen 334 VWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTFTEHTSGVTAVQFTARGN-VLLSSS 411 (893)
T ss_pred EEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEeccCCCceEEEEEEecCC-EEEEee
Confidence 9999988888888999999999999999999999999999999999975 46899999999999999999977 555888
Q ss_pred CCCcEEEEECCCCceeeEEeecCC--eeEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCC
Q 003177 666 NNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 742 (842)
Q Consensus 666 ~Dg~I~vwDl~t~~~i~~~~~~~~--i~~v~~sp~g~~l~~~s~dg-~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~ 742 (842)
-||+|+.||+...++.++|..+.+ ..|++..|.|..+++|+.|. .|++|++.+|+.+-.+.+|.++|.+++|+|++.
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~ 491 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS 491 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC
Confidence 999999999999999999998776 56888888899888888885 799999999999999999999999999999999
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-E-----------
Q 003177 743 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T----------- 809 (842)
Q Consensus 743 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~----------- 809 (842)
.|++++ |.+|++||+-... ..+.++. ....+..++|+|+|+.|++++.||.|.+||+..+..+ .
T Consensus 492 ~LaS~SWDkTVRiW~if~s~--~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR 568 (893)
T KOG0291|consen 492 LLASGSWDKTVRIWDIFSSS--GTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGR 568 (893)
T ss_pred eEEeccccceEEEEEeeccC--ceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccc
Confidence 999999 9999999997652 2233333 5678999999999999999999999999999765543 1
Q ss_pred -----Ec----cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 810 -----LS----AHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 810 -----~~----~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+. ......+.+++++||.+|++|+....|+||+
T Consensus 569 ~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 569 KETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred cccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 11 1235689999999999999999999999985
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-31 Score=267.71 Aligned_cols=278 Identities=24% Similarity=0.378 Sum_probs=245.8
Q ss_pred CCeeEEEEecCCCCcccccCCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeE
Q 003177 485 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 564 (842)
Q Consensus 485 ~~~s~~~~~~~~~~~~~~~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~ 564 (842)
.....+.|+.|. +.+.++|.|+.+-+|++... ..+..++-....|.
T Consensus 56 ~Ki~~~~ws~Ds---------------r~ivSaSqDGklIvWDs~Tt-------------------nK~haipl~s~WVM 101 (343)
T KOG0286|consen 56 NKIYAMDWSTDS---------------RRIVSASQDGKLIVWDSFTT-------------------NKVHAIPLPSSWVM 101 (343)
T ss_pred cceeeeEecCCc---------------CeEEeeccCCeEEEEEcccc-------------------cceeEEecCceeEE
Confidence 355667777765 78899999999999966443 23455666778899
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCC------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003177 565 SCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 638 (842)
Q Consensus 565 sv~fSpdg~~Lasgs~Dg~I~vwd~~t~------~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i 638 (842)
.|+|+|.|+++|+|+-|+...||++.+. +..+.+.+|++.+.|+.|.+| ..|+|+|.|.++.+||++++.. +
T Consensus 102 tCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~-~ 179 (343)
T KOG0286|consen 102 TCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ-T 179 (343)
T ss_pred EEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE-E
Confidence 9999999999999999999999999854 455778999999999999974 6799999999999999999764 8
Q ss_pred eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 639 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE 717 (842)
Q Consensus 639 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~ 717 (842)
..|.+|.+.|.+++++|...+.+++|+.|+..++||++.+.++..|.. ...|++++|.|+|.-|++|+.|++.++||++
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR 259 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence 899999999999999995566788999999999999999999999985 5679999999999999999999999999999
Q ss_pred CCeEEEEEeC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003177 718 TQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 794 (842)
Q Consensus 718 t~~~~~~l~~--h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d 794 (842)
....+..+.. ...+|++++|+..|++|++|. |.++.|||.-.+ +.+..+.+|++.|.++..+|||.-+++|+.|
T Consensus 260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEECCCCcEEEecchh
Confidence 9888877763 345899999999999999988 999999999887 7888899999999999999999999999999
Q ss_pred CeEEEEE
Q 003177 795 ETLELWN 801 (842)
Q Consensus 795 g~I~Iwd 801 (842)
..|+||.
T Consensus 337 s~lriW~ 343 (343)
T KOG0286|consen 337 STLRIWA 343 (343)
T ss_pred HheeecC
Confidence 9999994
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.1e-31 Score=276.61 Aligned_cols=311 Identities=15% Similarity=0.196 Sum_probs=269.9
Q ss_pred cccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 003177 506 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 585 (842)
Q Consensus 506 ~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~ 585 (842)
.+.+..+++++|+-|+...+|...... ....+.+|++.|+|+.||.||.+||||+.+|.|+
T Consensus 71 sl~P~~~l~aTGGgDD~AflW~~~~ge-------------------~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 71 SLHPNNNLVATGGGDDLAFLWDISTGE-------------------FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVL 131 (399)
T ss_pred EeCCCCceEEecCCCceEEEEEccCCc-------------------ceeEecCCCCceEEEEEccCceEEEecCCCccEE
Confidence 345577899999999888888665542 3567889999999999999999999999999999
Q ss_pred EEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEe
Q 003177 586 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 665 (842)
Q Consensus 586 vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 665 (842)
||...++.....+...-..|.-++|+|.+..|+.|+.||.|.+|.+.+.. ..+.+.+|..++++=.|.|+|+++ +++.
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~f~pdGKr~-~tgy 209 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSPCTCGEFIPDGKRI-LTGY 209 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCCcccccccCCCceE-EEEe
Confidence 99999999988887677789999999999999999999999999999864 478999999999999999998855 4899
Q ss_pred CCCcEEEEECCCCceeeEEee--cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEe--------CCCCCEEEE
Q 003177 666 NNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------GHKNQVHSV 735 (842)
Q Consensus 666 ~Dg~I~vwDl~t~~~i~~~~~--~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~--------~h~~~V~sl 735 (842)
.||+|++||+.++.++..+.. +....++.++..+..++.+..++.+++....+++.+.... .+...+.|+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv 289 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV 289 (399)
T ss_pred cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence 999999999999999888774 4457888999999999999999999999999998887766 344444555
Q ss_pred E---EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE
Q 003177 736 C---WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL 810 (842)
Q Consensus 736 ~---~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~ 810 (842)
. |+..=.+.++|+ ||+|.|||+... .++..-.|...|..+.|.+ ..+|++++.+|.|+.||.++|.++ .+
T Consensus 290 e~~~~ss~lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y 364 (399)
T KOG0296|consen 290 ESIPSSSKLPLAACGSVDGTIAIYDLAAS----TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY 364 (399)
T ss_pred hhcccccccchhhcccccceEEEEecccc----hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE
Confidence 4 444556778888 999999999875 3444455788899999999 789999999999999999999988 88
Q ss_pred ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 811 SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 811 ~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.+|...|.+++++|+.++++|+|.|++.+||+
T Consensus 365 ~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 365 TGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred ecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 89999999999999999999999999999985
No 27
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.6e-31 Score=322.46 Aligned_cols=284 Identities=18% Similarity=0.283 Sum_probs=242.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCC----e----EEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeE
Q 003177 556 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----T----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTV 626 (842)
Q Consensus 556 l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~----~----~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I 626 (842)
+..|.+.|++++|+|+|++||+|+.|+.|+|||+... . ....+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 122333 346799999987 47899999999999
Q ss_pred EEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEe-CCCCEEEEE
Q 003177 627 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ-PRLGRILAA 705 (842)
Q Consensus 627 ~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~s-p~g~~l~~~ 705 (842)
+|||+.++. .+..+.+|...|++++|+|....+|++|+.|++|++||++++.++..+.....+.++.|+ +++..+++|
T Consensus 558 ~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 999998765 477888999999999999855568889999999999999999999888877889999995 468899999
Q ss_pred EcCCeEEEEECCCCe-EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---CceeEEEeecCCCceEEEE
Q 003177 706 AIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCV 780 (842)
Q Consensus 706 s~dg~I~IwDl~t~~-~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~---~~~~i~~~~~~~~~I~sv~ 780 (842)
+.||.|++||+++.. .+..+.+|...|.++.|. ++.+|++++ |+.|+|||++... ...++..+.+|...+.+++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999998765 567788999999999997 677888888 9999999997532 2356788889999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEE--------------EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 781 FHPTFPSLLVIGCYETLELWNMTENKTL--------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 781 ~spdg~~L~sgs~dg~I~Iwdl~~~~~~--------------~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|++++.+|++++.|+.|++|+......+ ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999999999998655322 1123556799999999999999999999999996
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.3e-32 Score=303.18 Aligned_cols=275 Identities=23% Similarity=0.386 Sum_probs=238.7
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCC-------------------------------eEEEEeccC
Q 003177 553 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-------------------------------TVKSTLEEH 601 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~-------------------------------~~~~~l~~h 601 (842)
+.++......|+|+.|++|+++||.|..|..|++|.+... ...+++.+|
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 3444444556999999999999999999999999986521 123446799
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcee
Q 003177 602 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 681 (842)
Q Consensus 602 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i 681 (842)
.++|..+.|+|+.++|+++|.|++||+|.+.+.. ++..+.+|..+|+++.|+|.| ++|++++.|++-++|......+.
T Consensus 451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~Pl 528 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPL 528 (707)
T ss_pred CCceeeeeecccccceeeccCCcceeeeecccce-eEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCch
Confidence 9999999999999999999999999999999865 477888999999999999985 58889999999999999998888
Q ss_pred eEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 003177 682 GVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 759 (842)
Q Consensus 682 ~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s 759 (842)
+.+.+ .+.+.|+.|+|+..++++|+.|.+|++||+.+|..++.|.+|.++|++++|+|+|++|++|+ |+.|+|||+.+
T Consensus 529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 88875 56799999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE------------------------E-EEccCC
Q 003177 760 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT------------------------L-TLSAHD 814 (842)
Q Consensus 760 ~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~------------------------~-~~~~h~ 814 (842)
+ ..+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+..-.. + .+..-.
T Consensus 609 ~---~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~ 685 (707)
T KOG0263|consen 609 G---SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKN 685 (707)
T ss_pred C---cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecC
Confidence 8 78888889999999999999999999999999999999854221 1 233444
Q ss_pred CCeeEEEEeCCCCEEEEE
Q 003177 815 KLVSSLAASTVNGMVASA 832 (842)
Q Consensus 815 ~~V~sla~spdg~~Lasg 832 (842)
.+|.++.|....-.|++|
T Consensus 686 tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 686 TPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ceEEEEEEeccceeEEec
Confidence 577888887655444444
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.2e-32 Score=303.22 Aligned_cols=254 Identities=23% Similarity=0.427 Sum_probs=223.3
Q ss_pred ccCCcccCCCceEEeccCCCceEEeecCCCC---------------CCCcccccccccCCCeeeeEEEEecCCCCCeEEE
Q 003177 502 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDA---------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC 566 (842)
Q Consensus 502 ~~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~---------------~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv 566 (842)
++...+.+....+|+|-.|..|++|...... ...+......+..++. ...++.||.++|..+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~---~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG---TSRTLYGHSGPVYGC 457 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc---eeEEeecCCCceeee
Confidence 3445566777899999999999999665311 1112222333333332 345689999999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCcc
Q 003177 567 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 646 (842)
Q Consensus 567 ~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~ 646 (842)
.|+|+.++|++++.|++|++|.+.+..++..+++|..+|+++.|+|.|-|+||+|.|++.++|..+. ..+.+.+.+|-+
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~PlRifaghls 536 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NKPLRIFAGHLS 536 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CCchhhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 457999999999
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003177 647 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 725 (842)
Q Consensus 647 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l 725 (842)
.|.|+.|+|+.. ++++|+.|.+|++||+.+|..++.|.. .++|.+++|+|+|.+|++|+.||.|.+||+.+++.+..+
T Consensus 537 DV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l 615 (707)
T KOG0263|consen 537 DVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL 615 (707)
T ss_pred ccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh
Confidence 999999999966 777999999999999999999999985 567999999999999999999999999999999999999
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003177 726 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 760 (842)
Q Consensus 726 ~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 760 (842)
.+|.+.|.++.|+.+|..|++++ |..|++||+...
T Consensus 616 ~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 616 KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred hcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999999999999999 999999998754
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-31 Score=296.03 Aligned_cols=288 Identities=21% Similarity=0.323 Sum_probs=259.6
Q ss_pred eEEEEecCCCCCeEEEEEc-CCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003177 551 TEFQLIPASTSKVESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 629 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fS-pdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 629 (842)
.....+-|..+.|.+|+|- |+..+||+++..+.+++|++.+..+. .+.+|++.|.++....+|.+|+||+.|.++++|
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilW 392 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILW 392 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEE
Confidence 3455567888999999985 56789999999999999998887776 889999999999966678899999999999999
Q ss_pred EcCCCC---ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcee---eEE-------eecCCeeEEEEe
Q 003177 630 DTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVF-------KCQSGATQMRFQ 696 (842)
Q Consensus 630 Dl~t~~---~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i---~~~-------~~~~~i~~v~~s 696 (842)
.++++. .++....+|.+.|.+++++..+..+|++++.|++|++|++...+.. ..+ .|...|++++++
T Consensus 393 r~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 393 RLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred EecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence 885432 2455678999999999999999999999999999999999762211 111 246779999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003177 697 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 775 (842)
Q Consensus 697 p~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 775 (842)
|+...+++|+.|.+.+||+++......++.+|...|.|+.|++....+++++ |++|+||.+.+. .|+.++.+|...
T Consensus 473 ~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~~a 549 (775)
T KOG0319|consen 473 PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHTSA 549 (775)
T ss_pred CCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCccce
Confidence 9999999999999999999999999999999999999999999999999999 999999999998 899999999999
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 776 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 776 I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|..+.|-.++..|++++.||.|++|+++++.++ ++..|.+.|++++.++.+.+++||+.||.|.+|+
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999999999998 8889999999999999999999999999999995
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=4.5e-31 Score=273.95 Aligned_cols=279 Identities=24% Similarity=0.433 Sum_probs=250.3
Q ss_pred ccccCCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEE
Q 003177 500 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG 579 (842)
Q Consensus 500 ~~~~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs 579 (842)
..+..+.+.+...++++++.|.+|++|+.... .....++||++.|.+|+|+..|++||+++
T Consensus 109 ~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg-------------------~~e~~LrGHt~sv~di~~~a~Gk~l~tcS 169 (406)
T KOG0295|consen 109 SSVTRVIFHPSEALVVSASEDATIKVFDTETG-------------------ELERSLRGHTDSVFDISFDASGKYLATCS 169 (406)
T ss_pred cceeeeeeccCceEEEEecCCceEEEEEccch-------------------hhhhhhhccccceeEEEEecCccEEEecC
Confidence 33445555666788899999999999965443 22567899999999999999999999999
Q ss_pred CCCcEEEEecCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCC
Q 003177 580 HDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 658 (842)
Q Consensus 580 ~Dg~I~vwd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~ 658 (842)
.|-.+.+||..+ .++++.+.+|+..|.+++|.|.|.+|++++.|.+|+.|+++++. ++.++.+|...|..+..+.||.
T Consensus 170 sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~~DGt 248 (406)
T KOG0295|consen 170 SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVNQDGT 248 (406)
T ss_pred CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEecCCee
Confidence 999999999987 67788888999999999999999999999999999999999864 6999999999999999999976
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCC---------------CCEEEEEEcCCeEEEEECCCCeEE
Q 003177 659 DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR---------------LGRILAAAIENYISILDVETQVCR 722 (842)
Q Consensus 659 ~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~---------------g~~l~~~s~dg~I~IwDl~t~~~~ 722 (842)
++++|+.|.+|++|-+.++.|...+.. .-.|.+++|.|. +.++++++.|++|++||+.++.++
T Consensus 249 -i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL 327 (406)
T KOG0295|consen 249 -IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL 327 (406)
T ss_pred -EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE
Confidence 899999999999999999988777764 456888888773 237888999999999999999999
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 723 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 801 (842)
Q Consensus 723 ~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwd 801 (842)
.++.+|.+.|..++|+|.|+||+++. |++++|||+.+. .|.+.+..|..-++++.|+.+..++++|+-|.++++|.
T Consensus 328 ~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 328 FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999999999999999 899999999988 89999999999999999999999999999999999997
Q ss_pred C
Q 003177 802 M 802 (842)
Q Consensus 802 l 802 (842)
.
T Consensus 405 c 405 (406)
T KOG0295|consen 405 C 405 (406)
T ss_pred c
Confidence 4
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=5.6e-32 Score=283.96 Aligned_cols=278 Identities=23% Similarity=0.417 Sum_probs=237.8
Q ss_pred CeeEEEEecCCCCcccccCCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003177 486 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 565 (842)
Q Consensus 486 ~~s~~~~~~~~~~~~~~~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~s 565 (842)
....+.|.+++ +.+.+|+..+.+.+|. |..|....++.+|...|++
T Consensus 98 ~V~~v~WtPeG---------------RRLltgs~SGEFtLWN-------------------g~~fnFEtilQaHDs~Vr~ 143 (464)
T KOG0284|consen 98 PVNVVRWTPEG---------------RRLLTGSQSGEFTLWN-------------------GTSFNFETILQAHDSPVRT 143 (464)
T ss_pred ceeeEEEcCCC---------------ceeEeecccccEEEec-------------------CceeeHHHHhhhhccccee
Confidence 34556677765 6778899999999992 3344445567899999999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEecCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecC
Q 003177 566 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 644 (842)
Q Consensus 566 v~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h 644 (842)
+.|+++|.++++|+.+|.|++|+..- ..+..+.. |...|++++|+|+...|++||+||+|+|||....+. ...+.+|
T Consensus 144 m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GH 221 (464)
T KOG0284|consen 144 MKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGH 221 (464)
T ss_pred EEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccC
Confidence 99999999999999999999999654 34444544 459999999999999999999999999999987654 5677999
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003177 645 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 723 (842)
Q Consensus 645 ~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~ 723 (842)
.-.|.+++|+|... +|++++.|..|++||.+++.|+.++.. ...|..+.|++++++|++++.|..+++||+++.+.+.
T Consensus 222 gwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~ 300 (464)
T KOG0284|consen 222 GWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF 300 (464)
T ss_pred CCCcceeccCCccc-eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH
Confidence 99999999999965 888999999999999999999988875 4569999999999999999999999999999999999
Q ss_pred EEeCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 724 KLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 801 (842)
Q Consensus 724 ~l~~h~~~V~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwd 801 (842)
.+.+|+..|++++|+|- ..+|++++ ||.|..|.+...+ .....-..|...|++++|+|-|..|++|+.|.++++|.
T Consensus 301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred HhhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 99999999999999995 45666666 9999999998442 22333456889999999999999999999999999997
Q ss_pred C
Q 003177 802 M 802 (842)
Q Consensus 802 l 802 (842)
-
T Consensus 379 r 379 (464)
T KOG0284|consen 379 R 379 (464)
T ss_pred c
Confidence 5
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.5e-30 Score=287.24 Aligned_cols=316 Identities=19% Similarity=0.277 Sum_probs=263.0
Q ss_pred CCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC--EEEEEECC
Q 003177 504 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHD 581 (842)
Q Consensus 504 ~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~--~Lasgs~D 581 (842)
...+++...++++|+.|+.+++|+.... .....|+||.+.|.++.|+|+-. +|++|..|
T Consensus 110 ~ma~~~~g~LlAtggaD~~v~VWdi~~~-------------------~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 110 TMAFDPTGTLLATGGADGRVKVWDIKNG-------------------YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred EEEEcCCCceEEeccccceEEEEEeeCC-------------------EEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence 3445666689999999999999966443 34678999999999999999654 58999999
Q ss_pred CcEEEEecCCCeE-EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------------------------
Q 003177 582 KKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------------------------- 635 (842)
Q Consensus 582 g~I~vwd~~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~------------------------- 635 (842)
+.|++||+.+... +.++..|.+.|+++.|.+|+..+++++.|..|.|||+..-+
T Consensus 171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKG 250 (775)
T ss_pred ceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcc
Confidence 9999999986554 67788999999999999999999999999999999875000
Q ss_pred --------------------------------------------------------------------------------
Q 003177 636 -------------------------------------------------------------------------------- 635 (842)
Q Consensus 636 -------------------------------------------------------------------------------- 635 (842)
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence
Q ss_pred -------------------------ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce----eeEEe-
Q 003177 636 -------------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFK- 685 (842)
Q Consensus 636 -------------------------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~----i~~~~- 685 (842)
.....+.+|+..|.+++....| .+|++|+.|.++++|.++++.+ +....
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~g 409 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANG 409 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcc
Confidence 0012345688888888854454 5899999999999998854432 22222
Q ss_pred ecCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE-----EE----EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEE
Q 003177 686 CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-----RL----KLQGHKNQVHSVCWNTSGEYLASVS-DELVRV 754 (842)
Q Consensus 686 ~~~~i~~v~~sp~g-~~l~~~s~dg~I~IwDl~t~~~-----~~----~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~I 754 (842)
+...|.+++++..+ .+|++++.|.+|++|++...+. +. ....|...|+|++++|+.++|++|+ |.+.+|
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 35668888887644 4678889999999999986221 11 2346999999999999999999999 999999
Q ss_pred EEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEe
Q 003177 755 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 755 wDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs 833 (842)
|++... .....+.+|...|.++.|++....+++++.|.+|+||.+.+..++ ++.+|...|..+.|-.+++.|++|+
T Consensus 490 W~le~~---~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ 566 (775)
T KOG0319|consen 490 WDLEQL---RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG 566 (775)
T ss_pred ecccCc---eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc
Confidence 999966 889999999999999999999999999999999999999999998 8889999999999999999999999
Q ss_pred CCCcEEEcC
Q 003177 834 HDKCVKIWK 842 (842)
Q Consensus 834 ~DG~V~IWd 842 (842)
.||.|+||+
T Consensus 567 adGliKlWn 575 (775)
T KOG0319|consen 567 ADGLIKLWN 575 (775)
T ss_pred CCCcEEEEe
Confidence 999999996
No 34
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5e-30 Score=285.69 Aligned_cols=281 Identities=20% Similarity=0.387 Sum_probs=255.1
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003177 554 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 633 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t 633 (842)
..+.||...|.+++||.|...+++|+ .+.|+||+..+.++++++... .+.+..|.|.++++++|...|.+.|||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 45679999999999999988888776 478999999999999999644 899999999999999999999999999998
Q ss_pred CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-----Cce--------eeEEeecCCeeEEEEeCCCC
Q 003177 634 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSC--------AGVFKCQSGATQMRFQPRLG 700 (842)
Q Consensus 634 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-----~~~--------i~~~~~~~~i~~v~~sp~g~ 700 (842)
... +.+...|.+.|++++.+||+..+ ++++.|.+|++||..- +.. .+++.....|.|+.++||++
T Consensus 444 ~~l-~Eti~AHdgaIWsi~~~pD~~g~-vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 444 ASL-VETIRAHDGAIWSISLSPDNKGF-VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred hhh-hhhhhccccceeeeeecCCCCce-EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 654 67777999999999999998854 5999999999999742 111 13455578899999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003177 701 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 779 (842)
Q Consensus 701 ~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 779 (842)
+++++--|++|+||-+++-+....+.+|.-+|.|+..+||++++++|+ |..|+||-+.-| .|-+.+..|...|.++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV 598 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence 999999999999999999999999999999999999999999999999 999999999888 8888999999999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 780 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 780 ~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.|-|....+++++.|+.|+-||-..-+.+ .+.+|...|+|++.+|+|.+++++|.|.+|++|.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999998887766 8899999999999999999999999999999995
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.8e-31 Score=274.29 Aligned_cols=266 Identities=21% Similarity=0.401 Sum_probs=233.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 637 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~ 637 (842)
.....|+|+.+. ...+++|..|++|+|||..+..+++.+.+|++.|.|+.| +.+.|++|+.|.+|+|||+.+++ +
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge-~ 269 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE-P 269 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc-h
Confidence 356679999995 558999999999999999999999999999999999999 45699999999999999999976 5
Q ss_pred eeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcee---eEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 003177 638 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK-CQSGATQMRFQPRLGRILAAAIENYISI 713 (842)
Q Consensus 638 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i---~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~I 713 (842)
+.++.+|...|..+.|+ +.++++|+.|.+|.+||+.....+ +++. +...|+.+.|+. +++++++.|.+|++
T Consensus 270 l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikv 344 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKV 344 (499)
T ss_pred hhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEE
Confidence 88999999999999998 448889999999999999876532 2222 345677888765 59999999999999
Q ss_pred EECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003177 714 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 792 (842)
Q Consensus 714 wDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs 792 (842)
|++.+++++.++.+|...|.|+.+ .++++++|+ |.+|++||+..+ .|+..+.+|+.-|.++.|... .|++|+
T Consensus 345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRFd~k--rIVSGa 417 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRFDNK--RIVSGA 417 (499)
T ss_pred Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheeecCc--eeeecc
Confidence 999999999999999999999886 689999999 999999999998 899999999999999999654 799999
Q ss_pred cCCeEEEEECCCCeE----------EEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 793 CYETLELWNMTENKT----------LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 793 ~dg~I~Iwdl~~~~~----------~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.||+|+|||+..+.- ..+..|.+.|..+.|. ...|++++.|.+|.|||
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 999999999976531 1567899999999984 66799999999999997
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.1e-30 Score=280.40 Aligned_cols=282 Identities=22% Similarity=0.403 Sum_probs=256.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003177 554 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 633 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t 633 (842)
+.+..|+..|.|+.|+|...+++++-..|.|.|||.++...++.+....-+|.+..|-...+++++|++|..|+||+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-ceeeEEeecCC-eeEEEEeC-CCCEEEEEEcCCe
Q 003177 634 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSG-ATQMRFQP-RLGRILAAAIENY 710 (842)
Q Consensus 634 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-~~i~~~~~~~~-i~~v~~sp-~g~~l~~~s~dg~ 710 (842)
.++ ++.+..|...|.||+.+|..++ +.++++|-+|++||.+.. .|..+|..+.. |.+++|.| |.+.+++++-|++
T Consensus 87 ~ek-V~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 87 GEK-VKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred cee-eEEeeccccceeeeeecCCCCe-EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 775 8999999999999999999875 459999999999999864 67778876555 89999999 4567999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCC--CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003177 711 ISILDVETQVCRLKLQGHKNQVHSVCWNTSG--EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 787 (842)
Q Consensus 711 I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg--~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~ 787 (842)
|+||.+....+.+++.+|...|+|++|-+.| .||++|+ |.+|+|||..+. .|+.++.+|...|..++|+|.-+.
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCcE
Confidence 9999999999999999999999999998755 5999999 789999999987 899999999999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 788 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 788 L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
|++|+.||+|+||+..+.+.. ++.-....|+||+-.+.++.++.|.+.|.|.|
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999999988877 45556688999999999999999999988764
No 37
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=249.14 Aligned_cols=280 Identities=18% Similarity=0.345 Sum_probs=242.9
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003177 552 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 631 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 631 (842)
+...+..|.++|..+.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--ceeeEEee-cCCeeEEEEeCCCCEEEEEEcC
Q 003177 632 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKC-QSGATQMRFQPRLGRILAAAIE 708 (842)
Q Consensus 632 ~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~--~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~d 708 (842)
.+++. ++.+.+|...|+.+.|+.+.. ++++|+.|.++++||.++. +++..+.. ...|.++.+.. ..|++|+.|
T Consensus 89 ~TGkv-~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~D 164 (307)
T KOG0316|consen 89 NTGKV-DRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSVD 164 (307)
T ss_pred ccCee-eeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeeccC
Confidence 99874 899999999999999998754 8889999999999999864 45555543 46677777764 579999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCce--EEEEEeCCC
Q 003177 709 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPTF 785 (842)
Q Consensus 709 g~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I--~sv~~spdg 785 (842)
|+++.||++.|.....+.+ .+|+|++|++|++.+++++ |++|++.|-.++ +.+..+++|.+.- ..+++....
T Consensus 165 GtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred CcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeecccc
Confidence 9999999999988776654 4799999999999999988 999999999998 6777777776543 456788888
Q ss_pred CEEEEEEcCCeEEEEECCCCeEE-EEccCCCC-eeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 786 PSLLVIGCYETLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 786 ~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~-V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
..+++|+.||.|++||+.+...+ .+..|... |.+++++|.-..|+++... .+.+|
T Consensus 240 thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFW 296 (307)
T ss_pred eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceece
Confidence 89999999999999999999888 56566666 7999999988877777644 45455
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3e-29 Score=279.53 Aligned_cols=308 Identities=20% Similarity=0.283 Sum_probs=260.2
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 591 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t 591 (842)
..++.|..|+.|++|..... ....++.||+..|+++.|+..|..||+|+.|+.|.|||+-.
T Consensus 78 l~lAVGYaDGsVqif~~~s~-------------------~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~ 138 (888)
T KOG0306|consen 78 LLLAVGYADGSVQIFSLESE-------------------EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVG 138 (888)
T ss_pred ceEEEEecCceEEeeccCCC-------------------ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecc
Confidence 46799999999999955433 23567889999999999999999999999999999999988
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC------------------------------------
Q 003177 592 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------------------------------------ 635 (842)
Q Consensus 592 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~------------------------------------ 635 (842)
..-...+.+|++.|+...|..+.++|++++.|+.|++||+++..
T Consensus 139 E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 139 EEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWEL 218 (888)
T ss_pred ceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEe
Confidence 78888889999999888888877888888888888888876100
Q ss_pred --------------------------------------------------------------------------------
Q 003177 636 -------------------------------------------------------------------------------- 635 (842)
Q Consensus 636 -------------------------------------------------------------------------------- 635 (842)
T Consensus 219 ~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e 298 (888)
T KOG0306|consen 219 AFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEE 298 (888)
T ss_pred ecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccc
Confidence
Q ss_pred -----------------------------------ce------------------------------eeEeecCccceEE
Q 003177 636 -----------------------------------YS------------------------------LRTFTGHSTTVMS 650 (842)
Q Consensus 636 -----------------------------------~~------------------------------i~~~~~h~~~V~s 650 (842)
.. ...+.+|...|.+
T Consensus 299 ~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRs 378 (888)
T KOG0306|consen 299 NEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRS 378 (888)
T ss_pred cccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeE
Confidence 00 0123457778888
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 003177 651 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 730 (842)
Q Consensus 651 l~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~ 730 (842)
++++.+.. +++++ ..+.|++|+..+.+|++++.+. -+.+..|.|.++++++|...|.+.+||+.+...+.++..|.+
T Consensus 379 l~vS~d~~-~~~Sg-a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg 455 (888)
T KOG0306|consen 379 LCVSSDSI-LLASG-AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDG 455 (888)
T ss_pred EEeecCce-eeeec-CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccc
Confidence 88887643 44444 4789999999999999999985 788999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC-----CCceeEE----EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003177 731 QVHSVCWNTSGEYLASVS-DELVRVWSIGSG-----SKGECIH----ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 800 (842)
Q Consensus 731 ~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~-----~~~~~i~----~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iw 800 (842)
.|.+++.+||++.+++++ |.+|++||+.-- ...+.+. ..-.-...|.++.+|||+++|+++--|.+|+||
T Consensus 456 aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 999999999999999999 999999997521 1111111 111235789999999999999999999999999
Q ss_pred ECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 801 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 801 dl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
-+++-+.. .+++|.-+|.|+.++||+++++|||.|.+|+||
T Consensus 536 flDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred EecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 99998876 899999999999999999999999999999999
No 39
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=4.4e-29 Score=249.82 Aligned_cols=281 Identities=19% Similarity=0.243 Sum_probs=240.6
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003177 555 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 634 (842)
Q Consensus 555 ~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~ 634 (842)
.+.||..+|+-|.|+.+|.+|++++.|.++.||-..+|+.+.++.+|.+.|+|+....+.++++||+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeeEeecCccceEEEEEcCCCCcEEEEEe----CCCcEEEEECC-------CCceeeEEe-ecCCeeEEEEeCCCCEE
Q 003177 635 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSIN-------NGSCAGVFK-CQSGATQMRFQPRLGRI 702 (842)
Q Consensus 635 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs----~Dg~I~vwDl~-------t~~~i~~~~-~~~~i~~v~~sp~g~~l 702 (842)
+. +..+. ...+|..+.|+++|+.++++.. ..+.|.++|++ ..++...+. ..+.++.+.|.|-+.+|
T Consensus 85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 75 44443 5678999999999887666543 35689999998 344455544 46779999999999999
Q ss_pred EEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003177 703 LAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 780 (842)
Q Consensus 703 ~~~s~dg~I~IwDl~t~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 780 (842)
++|..+|.|.+||++++ +.+.....|...|+.+.+++|..++++++ |.+-++||+++. .+++++.. ..+|++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYTT-ERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEeee-ccccccee
Confidence 99999999999999998 55556677999999999999999999999 999999999987 67777664 78899999
Q ss_pred EeCCCCEEEEEEcCCe--EEEEECCCCe------------EE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 781 FHPTFPSLLVIGCYET--LELWNMTENK------------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 781 ~spdg~~L~sgs~dg~--I~Iwdl~~~~------------~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
++|...+++.++.... |.--+.+.++ .+ .+.+|-++|++++|+|+|+..++|++||.|+|.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9999988888877553 2222333332 12 677999999999999999999999999999973
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=3.5e-28 Score=255.88 Aligned_cols=267 Identities=30% Similarity=0.536 Sum_probs=236.5
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~ 590 (842)
..++++++.|+.+.+|...... ....+..|...|.++.|++++++|++++.||.|++||+.
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLETGE-------------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred CCEEEEeecCcEEEEEEeeCCC-------------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 3678888889999999654331 345667899999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcE
Q 003177 591 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 670 (842)
Q Consensus 591 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 670 (842)
+++.+..+..|...|.++.|++++.++++++.|+.|++||+.+.. ....+..|...|.+++|+|++. ++++++.|+.|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i 159 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTI 159 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcE
Confidence 988888888999999999999998899998889999999998654 4666778999999999999854 67677779999
Q ss_pred EEEECCCCceeeEEeecC-CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 003177 671 RYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 748 (842)
Q Consensus 671 ~vwDl~t~~~i~~~~~~~-~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 748 (842)
++||+++++.+..+..+. .+.++.|+|++..+++++.++.|++||+++++.+..+..|...+.+++|++++.++++++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 239 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE 239 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcC
Confidence 999999888887777544 799999999999999999999999999999988888888999999999999999999998
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 749 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 801 (842)
Q Consensus 749 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwd 801 (842)
|+.|++||+.++ ..+..+..+...+.+++|++++.+|++++.|+.|++|+
T Consensus 240 ~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 240 DGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999999876 66777778888999999999999999999999999996
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=3.5e-29 Score=260.15 Aligned_cols=285 Identities=19% Similarity=0.247 Sum_probs=246.9
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003177 552 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 631 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 631 (842)
.+.+|..|++.|++|+.+|+.+++|||+.|...+||++.+++....+.+|++.|+++.|+.||.+||||+.+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCe
Q 003177 632 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENY 710 (842)
Q Consensus 632 ~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~ 710 (842)
.++.. ...+...-..|.-+.|+|.+. +|+.|+.||.|.+|.+.+....+.+. +..++++-.|.|+|++++++..||+
T Consensus 136 stg~~-~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 STGGE-QWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ccCce-EEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98765 444445567788999999755 77799999999999999866666665 4667999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee--------cCCC---ceE
Q 003177 711 ISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--------CTGN---KFH 777 (842)
Q Consensus 711 I~IwDl~t~~~~~~l~~-h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~--------~~~~---~I~ 777 (842)
|++|++.++.++..+.. .....+++.++..+..++.|+ ++.+++-+..++ +.+.... .+.. .|.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg---KVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG---KVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc---eEEEecCCCCccccccchhhhhhhh
Confidence 99999999999888874 234677889999999999998 999999888887 4444333 2233 344
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 778 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 778 sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++.++..-+..++|+-||+|.|||+...++.....|...|+.+.|-+ ..+|++++.||.|++||
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 45566666788999999999999999999988889999999999998 78999999999999997
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.4e-29 Score=271.35 Aligned_cols=273 Identities=20% Similarity=0.292 Sum_probs=244.2
Q ss_pred CCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCc
Q 003177 504 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 583 (842)
Q Consensus 504 ~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~ 583 (842)
+..+.+.+.++.++-..++|.+|.-..- ..++.+.-..-+|.++.|-+..+++++|+.|..
T Consensus 18 sVd~HPtePw~la~LynG~V~IWnyetq-------------------tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~ 78 (794)
T KOG0276|consen 18 SVDFHPTEPWILAALYNGDVQIWNYETQ-------------------TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQ 78 (794)
T ss_pred eeecCCCCceEEEeeecCeeEEEecccc-------------------eeeeeeeecccchhhheeeeccceEEEecCCce
Confidence 4456777789999999999999954332 345666667778999999999999999999999
Q ss_pred EEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEE
Q 003177 584 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 663 (842)
Q Consensus 584 I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llas 663 (842)
|+||+..+++.+..|+.|.+.|.||+.+|...+++|+|+|-+|++||.+..-.+..++.+|...|.+++|+|....-+++
T Consensus 79 IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS 158 (794)
T KOG0276|consen 79 IRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFAS 158 (794)
T ss_pred EEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceee
Confidence 99999999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCC--CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 003177 664 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL--GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 740 (842)
Q Consensus 664 gs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g--~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spd 740 (842)
++-|++|+||.+....+..++.. ..+|+|+.|-+.+ .++++|+.|..|+|||..+..|+.++.+|...|..++|+|.
T Consensus 159 ~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~ 238 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPE 238 (794)
T ss_pred eeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCC
Confidence 99999999999999988888874 5679999998854 58999999999999999999999999999999999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003177 741 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 798 (842)
Q Consensus 741 g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~ 798 (842)
-.++++|+ ||+|+||+..+- +...++.-...++++++-.+.+..+++|...|.|.
T Consensus 239 lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 239 LPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred CcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 99999999 999999998776 45556666678899999999888888877776543
No 43
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=9.8e-29 Score=284.30 Aligned_cols=277 Identities=27% Similarity=0.426 Sum_probs=240.1
Q ss_pred CcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcE
Q 003177 505 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 584 (842)
Q Consensus 505 ~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I 584 (842)
..+.....+++.++.|+.+++|......+ .....+.+|...|.+++|+||+++|++++.|++|
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccc-----------------hhhccccccccceeeeEECCCCcEEEEecCCceE
Confidence 44455557899999999999996622211 2345558999999999999999999999999999
Q ss_pred EEEec-CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEE
Q 003177 585 VLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 663 (842)
Q Consensus 585 ~vwd~-~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llas 663 (842)
+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|+|||++++ .++..+.+|...|++++|++++. +|++
T Consensus 228 riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-~~~~~l~~hs~~is~~~f~~d~~-~l~s 305 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-ECVRKLKGHSDGISGLAFSPDGN-LLVS 305 (456)
T ss_pred EEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-eEEEeeeccCCceEEEEECCCCC-EEEE
Confidence 99999 566899999999999999999999999999999999999999985 46899999999999999999987 5557
Q ss_pred EeCCCcEEEEECCCCc--eeeEEeecC---CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCE---EEE
Q 003177 664 CDNNSEIRYWSINNGS--CAGVFKCQS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV---HSV 735 (842)
Q Consensus 664 gs~Dg~I~vwDl~t~~--~i~~~~~~~---~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V---~sl 735 (842)
++.|+.|++||+.++. +...+.... .+.++.|+|++.++++++.|+.+++||+..+.++..+.+|...+ .+.
T Consensus 306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~ 385 (456)
T KOG0266|consen 306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSP 385 (456)
T ss_pred cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecc
Confidence 7889999999999999 455554322 47999999999999999999999999999999999999988753 344
Q ss_pred EEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEE--cCCeEEEEECC
Q 003177 736 CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 803 (842)
Q Consensus 736 ~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~~spdg~~L~sgs--~dg~I~Iwdl~ 803 (842)
..++.+.++++++ |+.|++||+.++ ..+..+.+| ...+..+.+++...++++++ .|+.|++|...
T Consensus 386 ~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 386 TLSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 5578999999999 999999999986 677778888 88899999999999999998 67899999754
No 44
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=6.3e-30 Score=253.38 Aligned_cols=280 Identities=21% Similarity=0.269 Sum_probs=248.3
Q ss_pred EecCCCCCeEEEEEcC---CCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003177 555 LIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 631 (842)
Q Consensus 555 ~l~gH~~~V~sv~fSp---dg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 631 (842)
+..||+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+.+|.+|.+.|++.+++.+...-++++.|-+.+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4579999999999986 8889999999999999999999999999999999999999999888999999999999999
Q ss_pred CCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce-eeEE-eecCCeeEEEEeCCCCEEEEEEcCC
Q 003177 632 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSGATQMRFQPRLGRILAAAIEN 709 (842)
Q Consensus 632 ~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~-~~~~~i~~v~~sp~g~~l~~~s~dg 709 (842)
-++.. +..+. |..-|..++|+.|.+++| +|+.+..++|||++..+. ...+ .+.+.|..+.|......|++++.|+
T Consensus 89 ~tgde-lhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 89 VTGDE-LHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhh-hhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 98775 55554 888899999999977555 999999999999987542 2233 3567899999999999999999999
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003177 710 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 789 (842)
Q Consensus 710 ~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~ 789 (842)
.|++||.++++.+.++. ...+|+++.++++|++|.++..+.|++||..+. ..++.++ -...|.+..++|+...++
T Consensus 166 tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k-~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYK-MPCNVESASLHPKKEFFV 240 (334)
T ss_pred ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeecc-CccccccccccCCCceEE
Confidence 99999999999999887 678899999999999999988999999999876 4555444 245688899999999999
Q ss_pred EEEcCCeEEEEECCCCeEEE--EccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 790 VIGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 790 sgs~dg~I~Iwdl~~~~~~~--~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+|+.|..++.||..+++.+. ..+|.++|.|+.|+|||...++||.||+|+||.
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 99999999999999998883 379999999999999999999999999999993
No 45
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.2e-28 Score=246.16 Aligned_cols=282 Identities=17% Similarity=0.259 Sum_probs=250.3
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEE--EeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 003177 554 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 630 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~--~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWD 630 (842)
+.+.+|...|.+|+|+.+|..|++|+.|+++.||+++..+... ...+|.+.|-.++|+| ....|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5567999999999999999999999999999999998775553 3468999999999988 467899999999999999
Q ss_pred cCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCe
Q 003177 631 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 710 (842)
Q Consensus 631 l~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~ 710 (842)
++.++.. ...... ..=.-+.|+|+|.+ ++.++.|..|.+.|.++.+..........+..++|+-++..++.....|.
T Consensus 94 ~r~~k~~-~~i~~~-~eni~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRSGKCT-ARIETK-GENINITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eccCcEE-EEeecc-CcceEEEEcCCCCE-EEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 9987753 333322 33345889999884 55788899999999999999988888889999999988888888888899
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003177 711 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 789 (842)
Q Consensus 711 I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~ 789 (842)
|.|.....-+++..++.|.....||.|+|+|+|+++|+ |..+.+||+... .|++.+..+.-+|..+.|+.+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---iC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---ICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---hhheeeccccCceEEEEeccCcceee
Confidence 99999999999999999999999999999999999999 999999999876 78899999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCC---------CcEEEc
Q 003177 790 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD---------KCVKIW 841 (842)
Q Consensus 790 sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~D---------G~V~IW 841 (842)
+++.|..|-|-++.+|..+....+.++...|+|+|...+||-+++| |.|+||
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999888999999999999999999988765 566665
No 46
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.6e-30 Score=262.35 Aligned_cols=280 Identities=23% Similarity=0.357 Sum_probs=245.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEec--------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------EHTQWITDVRFSPSLSRLATSSADRTVRVW 629 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~--------~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 629 (842)
+..+-+.|..|||||.||++|+.||.|.|||..+|+..+.++ -+...|.|++|+.|...|++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 445568899999999999999999999999999988765543 478899999999999999999999999999
Q ss_pred EcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec-CCeeEEEEeCCCCEEEEEEcC
Q 003177 630 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE 708 (842)
Q Consensus 630 Dl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~~v~~sp~g~~l~~~s~d 708 (842)
.+.++.+..+.-..|+..|+|+.|+.|+..++ +++.|-++++.-+++|++++.++.+ +-|+...|.++|.++++++.|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 99998764444448999999999999988766 8899999999999999999999864 458999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEeC--CCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeec---CCCceEEEEE
Q 003177 709 NYISILDVETQVCRLKLQG--HKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVF 781 (842)
Q Consensus 709 g~I~IwDl~t~~~~~~l~~--h~~~V~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~---~~~~I~sv~~ 781 (842)
|+|++|+.++.+|+.+++. ...+|.++..-|. -..+++|. .++|+|.++.. ..++.+.. .++.+.++++
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEEe
Confidence 9999999999999988875 4557888887774 45677777 88999999865 45555543 4577889999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 782 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 782 spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+|.|.++++.+.|+.++.|.+.+|++. ++..|+..|..++-+|..+.||+-+.||.+++|+
T Consensus 446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999887 7778999999999999999999999999999996
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.3e-30 Score=266.16 Aligned_cols=267 Identities=19% Similarity=0.397 Sum_probs=229.2
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEec
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~ 589 (842)
.+..+.+|..|.+|++|+.++- ...+.+.||++.|.|+.|. .+.|++|+.|.+|+|||+
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~-------------------~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv 264 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSL-------------------ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDV 264 (499)
T ss_pred cchhhhcccccCceEEeccccH-------------------HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEec
Confidence 3456789999999999965443 3457788999999999995 569999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeeEeecCccceEEEEEcCCCCcEEEEEeCC
Q 003177 590 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 667 (842)
Q Consensus 590 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~--~i~~~~~h~~~V~sl~fspdg~~llasgs~D 667 (842)
.+++++.++-+|.+.|..+.|+. .+++|++.|.+|.|||+..+.. +.+.+.||...|+.+.|+. .++++++.|
T Consensus 265 ~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgD 339 (499)
T KOG0281|consen 265 NTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGD 339 (499)
T ss_pred cCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCC
Confidence 99999999999999999999974 5999999999999999987652 3456789999999999983 388899999
Q ss_pred CcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 003177 668 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 746 (842)
Q Consensus 668 g~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Las 746 (842)
.+|++|++.++++++++.. ..+|.|+.+ .++.+++|+.|++|++||++.|.++..+.+|..-|.|+.| |.+.+++
T Consensus 340 RTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVS 415 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS 415 (499)
T ss_pred ceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeee
Confidence 9999999999999999875 455777665 4678999999999999999999999999999999999999 5677888
Q ss_pred Ee-CCeEEEEEcCCCCCc------eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 747 VS-DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 747 gs-Dg~I~IwDl~s~~~~------~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
|. ||+|+|||+..+... -|+..+..|.+.|..+.|..- .|++++.|.+|.|||..++..-
T Consensus 416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f--qIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce--EEEeccCCCeEEEEEcCCCCcc
Confidence 88 999999999876432 256667778889999998654 7899999999999999877554
No 48
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.3e-29 Score=266.77 Aligned_cols=282 Identities=20% Similarity=0.344 Sum_probs=248.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 553 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
...+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+.+.|.++++++++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 45678899999999999998999999999999999987665 6788888899999999999999999999999999999
Q ss_pred cCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCe
Q 003177 631 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 710 (842)
Q Consensus 631 l~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~ 710 (842)
++.... ..++.+|.+.|+++.|...... +++++.|.+|++||+....|.+++...+.+..|+.+ ...++++-.|+.
T Consensus 248 vd~~r~-~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 248 VDSLRL-RHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKK 323 (459)
T ss_pred ccchhh-hhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccc
Confidence 998664 7889999999999999877554 779999999999999999999988877777777776 456788889999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC----CCceEEEEEeCCC
Q 003177 711 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTF 785 (842)
Q Consensus 711 I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~----~~~I~sv~~spdg 785 (842)
|++||.++..++.....+. .|+++..++++..|.+++ |.++.++|+++. ...+.+... ....+.++|+|++
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~---eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK---EIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc---cEEEEeeccccccccccceeEECCCC
Confidence 9999999999999988665 999999999999999999 999999999987 455554432 2458889999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEE-Ec-cCC-CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 786 PSLLVIGCYETLELWNMTENKTLT-LS-AHD-KLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 786 ~~L~sgs~dg~I~Iwdl~~~~~~~-~~-~h~-~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.|+++|+.||.|+||++.++++.. +. .+. ..|++++|+|.|..|++++.++.+.+|.
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999873 33 232 3699999999999999999999999994
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=3.7e-28 Score=246.98 Aligned_cols=271 Identities=20% Similarity=0.343 Sum_probs=234.4
Q ss_pred cCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003177 508 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 587 (842)
Q Consensus 508 ~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vw 587 (842)
.+.+.++++|+.|..|-+|...++.+. +.++++|++.|..+.|.+|++.|++++.|++|+.|
T Consensus 56 ~P~gs~~aSgG~Dr~I~LWnv~gdceN------------------~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 56 HPDGSCFASGGSDRAIVLWNVYGDCEN------------------FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred CCCCCeEeecCCcceEEEEeccccccc------------------eeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 334478999999999999987666433 56778999999999999999999999999999999
Q ss_pred ecCCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeC
Q 003177 588 CTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 666 (842)
Q Consensus 588 d~~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~ 666 (842)
|+++|++++.+++|...|+.+.-+.-| .++.+++.|++++|||+++.. +++++. ....++++.|...+..++ +|+-
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~-~kyqltAv~f~d~s~qv~-sggI 194 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFE-NKYQLTAVGFKDTSDQVI-SGGI 194 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhccc-cceeEEEEEeccccccee-eccc
Confidence 999999999999999999999854434 456788999999999999754 355543 457899999998877655 8999
Q ss_pred CCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC----CeEEEEEeCCCC----CEEEEEE
Q 003177 667 NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVET----QVCRLKLQGHKN----QVHSVCW 737 (842)
Q Consensus 667 Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t----~~~~~~l~~h~~----~V~sl~~ 737 (842)
|+.|++||++......++.. .+.|+.+..+++|.++++-+.|..+++||++- ..++..+.+|.- ....++|
T Consensus 195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 99999999999999998885 56799999999999999999999999999984 356777776532 4457799
Q ss_pred cCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 738 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 802 (842)
Q Consensus 738 spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl 802 (842)
+|++.++.+++ |..+++||.... .++..+.+|.+.|.++.|+|...+|++++.|.+|++=.+
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred cCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 99999999999 999999999876 799999999999999999999999999999999987443
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.4e-28 Score=275.57 Aligned_cols=282 Identities=21% Similarity=0.370 Sum_probs=249.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 003177 556 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 635 (842)
Q Consensus 556 l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~ 635 (842)
+...+..|..++|+|...+|+++-+.|.|.+||..-+.++..|.+|.++|..|+|+|...++++|++|..|+||++.+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 34556779999999999999999999999999999999999999999999999999999999999999999999999855
Q ss_pred ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCC-eeEEEEeCCCCEEEEEEcCCeEEEE
Q 003177 636 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISIL 714 (842)
Q Consensus 636 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-i~~v~~sp~g~~l~~~s~dg~I~Iw 714 (842)
++.++.+|-..|..+.|++.-..++ ++++|-+|+||+..+++|+..+..+.. |.|..|+|....+++++-|-+|+||
T Consensus 85 -clftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 85 -CLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred -ehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 5889999999999999999988655 999999999999999999999987665 8999999999999999999999999
Q ss_pred ECCCC-----------------------------eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003177 715 DVETQ-----------------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 764 (842)
Q Consensus 715 Dl~t~-----------------------------~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 764 (842)
|+..- ...+.+.+|...|+-++|+|.-.+|++|+ |..|++|.....+. -
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-W 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-W 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc-e
Confidence 98521 11345678999999999999999999999 88999999876532 4
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 765 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 765 ~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
.+.+..+|.+.|.++.|+|.-..|++.+.|++|+|||+...+.+ ++....+..+.++.+|..+++++|-+.| +.||
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VF 318 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVF 318 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEE
Confidence 56677889999999999999999999999999999999998877 5666678899999999999888765444 5554
No 51
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.9e-27 Score=239.41 Aligned_cols=282 Identities=22% Similarity=0.297 Sum_probs=237.9
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEE
Q 003177 552 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 629 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~--Dg~I~IW 629 (842)
..+.++.-.+.|.++.|+++|.+|++++.|..|+|||..+++.++++..++..|..++|......++.++. |.+|+..
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 34455667788999999999999999999999999999999999999999999999999888778877776 8899999
Q ss_pred EcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCC
Q 003177 630 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 709 (842)
Q Consensus 630 Dl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg 709 (842)
++.+++. ++.+.||...|.+|+.+|-++ .+++++.|++|++||++..+|...+.. ..-..++|.|.|-.++++...+
T Consensus 86 sl~dNky-lRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 86 SLHDNKY-LRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EeecCce-EEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcEEEEecCCC
Confidence 9998765 999999999999999999975 666999999999999999888877765 4455689999988888888888
Q ss_pred eEEEEECCCC--eEEEEEe---CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC---ceEEEE
Q 003177 710 YISILDVETQ--VCRLKLQ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN---KFHSCV 780 (842)
Q Consensus 710 ~I~IwDl~t~--~~~~~l~---~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~---~I~sv~ 780 (842)
.|++||++.- .+..++. +.....+.|.|+|||++|+.++ .+.+++.|.-+| ..+..+..+.. .-...+
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G---~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG---TVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC---cEeeeEeeccCCCCcceeEE
Confidence 9999999863 3333333 3456789999999999999888 889999999988 45555554432 336789
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEE-EEcc-CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 781 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 781 ~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~-h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
|.||+++|++++.||+|++|++++++.+ .+.+ +.+++.++.|+|.-.++++++ ..+.+|
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence 9999999999999999999999999888 5555 789999999999887777765 457666
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.1e-27 Score=235.77 Aligned_cols=270 Identities=21% Similarity=0.383 Sum_probs=220.5
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEe-cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEec
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l-~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~ 589 (842)
..++++++.|..|++|.... +..+....++ .+|+..|.+|+|+|.|++||+|+.|.++.||.-
T Consensus 27 g~ilAscg~Dk~vriw~~~~----------------~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSS----------------GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred ceEEEeecCCceEEEEecCC----------------CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeec
Confidence 35899999999999996543 1123444444 479999999999999999999999999999975
Q ss_pred C--CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--ceeeEeecCccceEEEEEcCCCCcEEEEEe
Q 003177 590 E--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 665 (842)
Q Consensus 590 ~--t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~--~~i~~~~~h~~~V~sl~fspdg~~llasgs 665 (842)
. +.+++.++++|...|.|++|+++|.+|||++.|+.|-||.+..+. .+...+..|...|..+.|+|... +|++++
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~S 169 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCS 169 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEec
Confidence 5 457889999999999999999999999999999999999998443 35678899999999999999854 888999
Q ss_pred CCCcEEEEECCC---CceeeEEeec-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC
Q 003177 666 NNSEIRYWSINN---GSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 741 (842)
Q Consensus 666 ~Dg~I~vwDl~t---~~~i~~~~~~-~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg 741 (842)
.|.+|++|+-.. -.+..++..+ ..|.+++|++.|..+++++.|++++||-..+.-. ..|...+..+.|. .
T Consensus 170 YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~ 243 (312)
T KOG0645|consen 170 YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--N 243 (312)
T ss_pred cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--c
Confidence 999999998762 3567777654 4799999999999999999999999998663211 1278899999998 4
Q ss_pred CEEEEEe-CCeEEEEEcCCCCCc---e-eEEEeecCCCceEEEEEeCC-CCEEEEEEcCCeEEEEECC
Q 003177 742 EYLASVS-DELVRVWSIGSGSKG---E-CIHELSCTGNKFHSCVFHPT-FPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 742 ~~Lasgs-Dg~I~IwDl~s~~~~---~-~i~~~~~~~~~I~sv~~spd-g~~L~sgs~dg~I~Iwdl~ 803 (842)
..|++++ |+.|++|........ + ....-..|+..|+++.|.|. .+.|++++.||.|++|.+.
T Consensus 244 ~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 244 GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 4566666 999999987643111 1 12234568889999999995 6789999999999999864
No 53
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=4.7e-28 Score=246.24 Aligned_cols=287 Identities=25% Similarity=0.386 Sum_probs=240.2
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC------------------CeEEEEeccCCCCeEEEEEcCC
Q 003177 552 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSPS 613 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t------------------~~~~~~l~~h~~~I~~l~fspd 613 (842)
+-..+..|++++.+.+|++||.++|+|+.|..|+|+|++. .-.++++..|.+.|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4466789999999999999999999999999999999761 1356888899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCce-eeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe----ecC
Q 003177 614 LSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQS 688 (842)
Q Consensus 614 g~~Latgs~Dg~I~IWDl~t~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~----~~~ 688 (842)
...|++++.|++|++||+...... .........+|.+|.|+|.|++++ .|....++++||+++..|...-. +.+
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCccccccc
Confidence 999999999999999999754321 112223457899999999988555 78888999999999988876543 356
Q ss_pred CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeC-CC-CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcee
Q 003177 689 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC 765 (842)
Q Consensus 689 ~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~-h~-~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~ 765 (842)
.|+++.+++.++..++++.||.|++||--+++|+.++.. |. ..|.+..|..+++||++.+ |..|++|.+.++ .+
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R~ 339 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---RM 339 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---ce
Confidence 799999999999999999999999999999999988764 54 4789999999999999988 999999999998 77
Q ss_pred EEEeecCCC-----ceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEeCCCc
Q 003177 766 IHELSCTGN-----KFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKC 837 (842)
Q Consensus 766 i~~~~~~~~-----~I~sv~~spdg~~L~sgs~d-g~I~Iwdl~~~~~~--~~~~h~~~V~sla~spdg~~Lasgs~DG~ 837 (842)
+..+.+.+. --+...|.....+++.-... +.+.-||.++...+ .-.+|.+.+..+.-+|.+.-+++|++|-.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 777765421 12345677777777766553 48999999988766 34599999999999999999999999999
Q ss_pred EEEcC
Q 003177 838 VKIWK 842 (842)
Q Consensus 838 V~IWd 842 (842)
+++|.
T Consensus 420 aRFWy 424 (430)
T KOG0640|consen 420 ARFWY 424 (430)
T ss_pred eeeee
Confidence 99993
No 54
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=247.52 Aligned_cols=281 Identities=17% Similarity=0.286 Sum_probs=242.0
Q ss_pred ccCCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003177 502 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 581 (842)
Q Consensus 502 ~~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~D 581 (842)
+-...+++.+.++++|+.|+++++|+.... ....++.||...|..+++|+-..||++++.|
T Consensus 154 Vr~vavdP~n~wf~tgs~DrtikIwDlatg-------------------~LkltltGhi~~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGSADRTIKIWDLATG-------------------QLKLTLTGHIETVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred EEEEeeCCCceeEEecCCCceeEEEEcccC-------------------eEEEeecchhheeeeeeecccCceEEEecCC
Confidence 334556788899999999999999965443 2356789999999999999999999999999
Q ss_pred CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEE
Q 003177 582 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 661 (842)
Q Consensus 582 g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~ll 661 (842)
+.|+.||++..+.++.+.+|-..|.|++.+|.-..|+||+.|.+++|||+++.. .+..+.+|...|..+.+.|.+.. +
T Consensus 215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpq-v 292 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQ-V 292 (460)
T ss_pred CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCc-e
Confidence 999999999999999999999999999999999999999999999999999854 58999999999999999988664 5
Q ss_pred EEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 003177 662 CSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 740 (842)
Q Consensus 662 asgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spd 740 (842)
++|+.|++|++||++.++...++.+ ...+.+++.+|....|++++. ..|+-|++..+..+..+.+|...|.+++...|
T Consensus 293 it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-dnik~w~~p~g~f~~nlsgh~~iintl~~nsD 371 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-DNIKQWKLPEGEFLQNLSGHNAIINTLSVNSD 371 (460)
T ss_pred EEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-ccceeccCCccchhhccccccceeeeeeeccC
Confidence 5999999999999999998877765 456999999998666666554 56899999999998889999999999999888
Q ss_pred CCEEEEEeCCeEEEEEcCCCCCceeEEEeec-----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 741 GEYLASVSDELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 741 g~~LasgsDg~I~IwDl~s~~~~~~i~~~~~-----~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
+-+++.+..|.+.+||.+++........+.. .+..|.+.+|...|..|+++..|.+|++|.-..
T Consensus 372 ~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 372 GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 8666655588999999999855444433322 245789999999999999999999999997543
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.6e-27 Score=247.17 Aligned_cols=271 Identities=20% Similarity=0.345 Sum_probs=232.5
Q ss_pred cCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC---EEEEEECCCcE
Q 003177 508 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK---LLATGGHDKKA 584 (842)
Q Consensus 508 ~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~---~Lasgs~Dg~I 584 (842)
...+.++.+|+.|+.+++|.... .....+.||+++|.+++|..... .|++++.|.++
T Consensus 112 ~~~~~~IltgsYDg~~riWd~~G--------------------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 112 KGASKWILTGSYDGTSRIWDLKG--------------------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL 171 (423)
T ss_pred cccCceEEEeecCCeeEEEecCC--------------------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence 33478999999999999995432 24678899999999888865333 59999999999
Q ss_pred EEEecCCCeEE----EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC------------------------Cc
Q 003177 585 VLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DY 636 (842)
Q Consensus 585 ~vwd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~------------------------~~ 636 (842)
++|.++.++.+ ....+|...|-+|...+++..+++|+.|.+|.||+..+. +.
T Consensus 172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred EEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 99988876543 334599999999999999999999999999999993211 13
Q ss_pred eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 637 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 716 (842)
Q Consensus 637 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl 716 (842)
++..+.+|..+|.++.|++ ...+++++.|.+|++||+.++.++..+.+...+.++.++|....|++|+.|..|++||.
T Consensus 252 P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred ceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCC
Confidence 5667889999999999998 34788999999999999999999999999999999999999999999999999999999
Q ss_pred CCC---eEEEEEeCCCCCEEEEEEcCCCCE-EEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003177 717 ETQ---VCRLKLQGHKNQVHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 791 (842)
Q Consensus 717 ~t~---~~~~~l~~h~~~V~sl~~spdg~~-Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sg 791 (842)
+++ .....+.+|.+.|.++.|+|...+ |++++ |+++++||+++.. ..+..+..|...|.++.|... ..|++|
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~~-~~IvSG 406 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNEG-GLIVSG 406 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccCC-ceEEec
Confidence 976 456788999999999999997765 55566 9999999999873 488999999999999999865 469999
Q ss_pred EcCCeEEEEECC
Q 003177 792 GCYETLELWNMT 803 (842)
Q Consensus 792 s~dg~I~Iwdl~ 803 (842)
+.|.+|+|+...
T Consensus 407 GaD~~l~i~~~~ 418 (423)
T KOG0313|consen 407 GADNKLRIFKGS 418 (423)
T ss_pred cCcceEEEeccc
Confidence 999999998643
No 56
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.4e-27 Score=247.43 Aligned_cols=278 Identities=21% Similarity=0.323 Sum_probs=235.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCC---CEEEEEeCCCeEEEEEcCCC
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENP 634 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg---~~Latgs~Dg~I~IWDl~t~ 634 (842)
-|.+.|.++... +++|++|++||.+++||. .|+....+.+|.++|.+++|.-.. ..|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 478888888887 779999999999999995 578899999999999988885533 35999999999999999876
Q ss_pred Cce---eeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-------------------------ceeeEEe-
Q 003177 635 DYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-------------------------SCAGVFK- 685 (842)
Q Consensus 635 ~~~---i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-------------------------~~i~~~~- 685 (842)
... +....||...|-++...+++. .+++++.|.+|.||+..+. .++.++.
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 542 234459999999999999977 6779999999999993221 1122222
Q ss_pred ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003177 686 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 764 (842)
Q Consensus 686 ~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 764 (842)
|...|.++.|++ ...+++++.|.+|+.||+.++.++..+. ....+.|+.++|..++|++|+ |..|++||-+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 345688999988 6889999999999999999999888887 456799999999999999998 9999999999987767
Q ss_pred eEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCe--EEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 765 CIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 765 ~i~~~~~~~~~I~sv~~spdg~~-L~sgs~dg~I~Iwdl~~~~--~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
....+.+|.+.|.++.|+|...+ |++++.|+++++||+++.+ +..+.+|...|.++.|. ++.+|++|+.|.+|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 88889999999999999998765 6778889999999999876 44888999999999997 56799999999999997
Q ss_pred C
Q 003177 842 K 842 (842)
Q Consensus 842 d 842 (842)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 4
No 57
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=272.32 Aligned_cols=247 Identities=21% Similarity=0.322 Sum_probs=206.7
Q ss_pred eEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC--------------------------------C-----
Q 003177 551 TEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--------------------------------F----- 592 (842)
Q Consensus 551 ~~i~~l~-gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t--------------------------------~----- 592 (842)
...+.+. +|.+.|+++.||+||+|||+||.|+.|+||.+.. .
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3445566 9999999999999999999999999999997543 0
Q ss_pred -----------------------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceE
Q 003177 593 -----------------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 649 (842)
Q Consensus 593 -----------------------~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~ 649 (842)
+++..+.+|.+.|.+|.|+.+ .+|+++|.|++|++|++.... ++..|. |...|+
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~-HndfVT 413 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDFVT 413 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEe-cCCeeE
Confidence 112234589999999999965 589999999999999999654 566665 999999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeC--
Q 003177 650 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-- 727 (842)
Q Consensus 650 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~-- 727 (842)
||+|+|..+++|++|+-||.|+||++...+.+.-.....-|++++|.|+|...++|+.+|.+++|+.+..+....+.-
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 999999999999999999999999999999888888889999999999999999999999999999998776554321
Q ss_pred C------CCCEEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCceeEEEeecCC--CceEEEEEeCCCCEEEEEEcCCeE
Q 003177 728 H------KNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCYETL 797 (842)
Q Consensus 728 h------~~~V~sl~~spdg--~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~--~~I~sv~~spdg~~L~sgs~dg~I 797 (842)
| ...|+++.|.|.. ++|++..|..|+|||.+.. ..+..+++.. ..-....|+.||++|++++.|..|
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCceE
Confidence 1 2279999998744 3677666999999999776 5555665433 334567889999999999999999
Q ss_pred EEEECC
Q 003177 798 ELWNMT 803 (842)
Q Consensus 798 ~Iwdl~ 803 (842)
+||++.
T Consensus 571 YiW~~~ 576 (712)
T KOG0283|consen 571 YIWKND 576 (712)
T ss_pred EEEeCC
Confidence 999973
No 58
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=2.3e-26 Score=282.92 Aligned_cols=286 Identities=14% Similarity=0.228 Sum_probs=226.3
Q ss_pred ccCCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEEC
Q 003177 502 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGH 580 (842)
Q Consensus 502 ~~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSp-dg~~Lasgs~ 580 (842)
+....+...+.++++|+.|+.|++|........ . .... ..+..+. +...|.+++|++ ++.+||+++.
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~----~------~~~~-~~~~~~~-~~~~v~~l~~~~~~~~~las~~~ 553 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKD----G------RDIH-YPVVELA-SRSKLSGICWNSYIKSQVASSNF 553 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCccccc----c------cccc-cceEEec-ccCceeeEEeccCCCCEEEEEeC
Confidence 344455666789999999999999975431100 0 0000 0112233 346799999987 4789999999
Q ss_pred CCcEEEEecCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCc
Q 003177 581 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 659 (842)
Q Consensus 581 Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~ 659 (842)
||+|+|||+.+++.+..+.+|...|++++|+| ++.+|++|+.|++|++||+.++. .+..+..+ ..|.++.|++....
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~-~~v~~v~~~~~~g~ 631 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTK-ANICCVQFPSESGR 631 (793)
T ss_pred CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecC-CCeEEEEEeCCCCC
Confidence 99999999999999999999999999999997 78999999999999999998765 35555544 67999999766566
Q ss_pred EEEEEeCCCcEEEEECCCCc-eeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC------CeEEEEEeCCCCC
Q 003177 660 LLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQ 731 (842)
Q Consensus 660 llasgs~Dg~I~vwDl~t~~-~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t------~~~~~~l~~h~~~ 731 (842)
+|++|+.||.|++||+++.+ .+..+. +...|.++.|. ++..+++++.|+.|++||++. ..++..+.+|...
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~ 710 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV 710 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC
Confidence 88899999999999998765 344443 45679999997 678999999999999999974 3567889999999
Q ss_pred EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcee--------E--EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003177 732 VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC--------I--HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 800 (842)
Q Consensus 732 V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~--------i--~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iw 800 (842)
+.+++|++++.+|++|+ |+.|+||+......... + .....+...|.+++|++++..|++++.+|.|+||
T Consensus 711 i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred eeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence 99999999999999999 99999999865421100 0 0112344669999999999999999999999999
Q ss_pred EC
Q 003177 801 NM 802 (842)
Q Consensus 801 dl 802 (842)
++
T Consensus 791 ~~ 792 (793)
T PLN00181 791 EM 792 (793)
T ss_pred ec
Confidence 96
No 59
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=3.9e-26 Score=263.98 Aligned_cols=249 Identities=16% Similarity=0.209 Sum_probs=203.6
Q ss_pred EECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc-------eeeEeecCccceE
Q 003177 578 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVM 649 (842)
Q Consensus 578 gs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~t~~~-------~i~~~~~h~~~V~ 649 (842)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++.. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566889999998887888899999999999999996 78999999999999999976431 2446788999999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 003177 650 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 729 (842)
Q Consensus 650 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~ 729 (842)
+++|+|++..++++++.|++|++||+++++.+..+.+...|.+++|+|+|..|++++.|+.|+|||+++++.+..+.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 99999998888889999999999999999888777777889999999999999999999999999999999999999998
Q ss_pred CCEEEE-----EEcCCCCEEEEEe-CC----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003177 730 NQVHSV-----CWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 799 (842)
Q Consensus 730 ~~V~sl-----~~spdg~~Lasgs-Dg----~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~I 799 (842)
+.+.+. .|++++.+|++++ |+ .|+|||++..........+..+.+.+......+++.++++|+.|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 765433 3458888888877 53 7999999964322222233333344444445566888999999999999
Q ss_pred EECCCCeEEEE--ccCCCCeeEEEEeCCC
Q 003177 800 WNMTENKTLTL--SAHDKLVSSLAASTVN 826 (842)
Q Consensus 800 wdl~~~~~~~~--~~h~~~V~sla~spdg 826 (842)
|++..+....+ ..+..++.+++|.|+.
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEcccc
Confidence 99988765433 3466788899999964
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.7e-27 Score=237.05 Aligned_cols=276 Identities=21% Similarity=0.358 Sum_probs=229.5
Q ss_pred EEEEEcC--CCCEEEEEE-------CCCcEEEEecCCCeEEEEec--cCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEc
Q 003177 564 ESCHFSP--DGKLLATGG-------HDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDT 631 (842)
Q Consensus 564 ~sv~fSp--dg~~Lasgs-------~Dg~I~vwd~~t~~~~~~l~--~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl 631 (842)
.++.||| ++ +||++. ..|++.|.++....-+..+. .-.+.+.+++|+++ .+.+++++.||+++|||+
T Consensus 12 ysvqfSPf~~n-rLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVEN-RLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccc-hhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 5688998 34 333332 35889999986443333322 35577999999995 667899999999999999
Q ss_pred CCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCC-CCEEEEEEcCC
Q 003177 632 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR-LGRILAAAIEN 709 (842)
Q Consensus 632 ~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~-g~~l~~~s~dg 709 (842)
..+..++..++.|...|.+++|++..+..+++++.|++|++|+......+.++.. ...|....|+|. .+.+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 8888899999999999999999998888888999999999999999999998885 455889999994 56788889999
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-C
Q 003177 710 YISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-P 786 (842)
Q Consensus 710 ~I~IwDl~t~~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg-~ 786 (842)
.+++||++..-....+..|...|.|+.|+. +...|++++ |+.|++||+++-. ..+.++.+|+-.|..+.|+|.. .
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhh
Confidence 999999997644455888999999999997 556777777 9999999999875 5688889999999999999976 4
Q ss_pred EEEEEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEeC-CCCEEEEEeCCCcEEEcC
Q 003177 787 SLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 842 (842)
Q Consensus 787 ~L~sgs~dg~I~Iwdl~~~~~~--~~~~h~~~V~sla~sp-dg~~Lasgs~DG~V~IWd 842 (842)
.|++++.|-+++|||....... +...|..-|..+.|++ +..++|+++.|+.++||+
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 5777788889999998755433 6668899999999988 557999999999999996
No 61
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.8e-28 Score=254.27 Aligned_cols=280 Identities=17% Similarity=0.311 Sum_probs=236.6
Q ss_pred EEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 552 EFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpdg-~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
.+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...++..++..|.+.|..|++.. ..+++++.|++|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 467789999999999999976 6899999999999999999999999999999999999976 6799999999999999
Q ss_pred cCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec-CCeeEEEEeCCCCEEEE-EEcC
Q 003177 631 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILA-AAIE 708 (842)
Q Consensus 631 l~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~~v~~sp~g~~l~~-~s~d 708 (842)
++.+ +++++.+ ...+..|+-+..+ ..+++|+. .|.|||.....++..+... ..|.++.|+|....+++ ++.|
T Consensus 136 ~~~~--p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 136 IDGP--PLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred ccCC--cceeeec-ccccccccccccc-ccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 9863 4566654 3557777766553 47778864 5899999988888888753 55999999997766555 5589
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003177 709 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 787 (842)
Q Consensus 709 g~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~ 787 (842)
+.|.+||++.+.++..+. ....-+.|+|+|.+-.+++++ |..++.||++... ..+....+|.+.|.++.|+|.|..
T Consensus 210 rsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred CceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcch
Confidence 999999999998877665 344567899999777777777 8899999998764 677788899999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEc--cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 788 LLVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 788 L~sgs~dg~I~Iwdl~~~~~~~~~--~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|++|+.|.+|+||.++.+....+. .--..|.|+.|+.|.+++++||+|+.|++|+
T Consensus 287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 999999999999999887765332 2235699999999999999999999999996
No 62
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=5.2e-28 Score=239.84 Aligned_cols=275 Identities=19% Similarity=0.218 Sum_probs=239.5
Q ss_pred cCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003177 508 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 587 (842)
Q Consensus 508 ~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vw 587 (842)
.+..-|+.+++.|+.--+- .|.+-.-+.++.||.+.|++++++.+....|+++.|-+.+||
T Consensus 26 tp~g~flisa~kd~~pmlr-------------------~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 26 TPDGYFLISASKDGKPMLR-------------------NGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred CCCceEEEEeccCCCchhc-------------------cCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 4555788888887543221 122223478899999999999999999999999999999999
Q ss_pred ecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC
Q 003177 588 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 667 (842)
Q Consensus 588 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 667 (842)
|.-+|..+.+| .|...|..++|+.|.++|+||+.++.++|||++..+.+...+.+|.+.|..+.|+...+.+| ++..|
T Consensus 87 ~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd 164 (334)
T KOG0278|consen 87 DAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADD 164 (334)
T ss_pred hhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEE-eeccC
Confidence 99999999988 48899999999999999999999999999999999988999999999999999998866555 66889
Q ss_pred CcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003177 668 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 747 (842)
Q Consensus 668 g~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasg 747 (842)
++||+||.++++.+..+.....|+++.++++|. +++.+..+.|.+||..+-..+..+. ....|.+..++|+..++++|
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~-ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaG 242 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR-ILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAG 242 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCcceeeccCCC-EEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEec
Confidence 999999999999999999999999999999966 5566677899999999988888776 56789999999999888888
Q ss_pred e-CCeEEEEEcCCCCCceeEEE-eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 748 S-DELVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 748 s-Dg~I~IwDl~s~~~~~~i~~-~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
+ |..++.||..++ +.+.. .++|.++|.|+.|+|+|...++|+.||+|+||....++..
T Consensus 243 ged~~~~kfDy~Tg---eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 243 GEDFKVYKFDYNTG---EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CcceEEEEEeccCC---ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 8 999999999999 44545 4889999999999999999999999999999998776544
No 63
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=4.4e-27 Score=252.87 Aligned_cols=289 Identities=17% Similarity=0.260 Sum_probs=233.6
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeE----EEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003177 551 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTL-EEHTQWITDVRFSPSLSRLATSSADRT 625 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~----~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg~ 625 (842)
..-..+++|+..|.++++.|.|-.|++|+.|.+|++||...... .+.+ ......|.++.|++.+..|++.+....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 34567899999999999999999999999999999999864322 1222 234456999999999999999998889
Q ss_pred EEEEEcCCCCc-----------eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc-eeeEEee------c
Q 003177 626 VRVWDTENPDY-----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC------Q 687 (842)
Q Consensus 626 I~IWDl~t~~~-----------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~~------~ 687 (842)
++|+|-+.... -+....+|...++|.+|+|..+..|++|+.||++++||++..+ ...++++ .
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 99999764321 0123467999999999999999999999999999999998654 3444443 2
Q ss_pred CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--E-EEEEeCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003177 688 SGATQMRFQPRLGRILAAAIENYISILDVETQV--C-RLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 761 (842)
Q Consensus 688 ~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~--~-~~~l~~h~~--~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~ 761 (842)
-.++.++|++++..|++|+.||.|.+|+..+.. + ...-..|.. .|+||.||+||++|++-+ |+++++||++..+
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 247899999999999999999999999986542 2 233345777 899999999999999988 9999999999875
Q ss_pred CceeEEEeec--CCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEE
Q 003177 762 KGECIHELSC--TGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 832 (842)
Q Consensus 762 ~~~~i~~~~~--~~~~I~sv~~spdg~~L~sgs~------dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasg 832 (842)
+++....+ ...+-+.|+|+|+.+.|++|++ .+.+++||..+...+ ++.-....|..+.|+|.-+.|+.|
T Consensus 398 --kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 398 --KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred --cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence 45555443 3455688999999999998865 358999999888777 555567789999999999999999
Q ss_pred eCCCcEEEc
Q 003177 833 SHDKCVKIW 841 (842)
Q Consensus 833 s~DG~V~IW 841 (842)
+.||+++||
T Consensus 476 sgdG~~~vy 484 (641)
T KOG0772|consen 476 SGDGTAHVY 484 (641)
T ss_pred cCCCceEEE
Confidence 999999986
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4e-27 Score=231.89 Aligned_cols=264 Identities=22% Similarity=0.301 Sum_probs=229.2
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEec
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~ 589 (842)
..++..+.+.|.+|++|.+... ..++++.+|..+|..++.+.|+..|++|+.|..|.+||+
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg-------------------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRG-------------------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred CCCEEEEcCCCceEEeeccccc-------------------ceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 3466677778899999966443 357889999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ceeeEeecCccceEEEEEcCCCCcEEEEEeCCC
Q 003177 590 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 668 (842)
Q Consensus 590 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~-~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 668 (842)
.+|+.++.+.+|.+.|+.++|+.+...+++|+.|.+|++||.++.. .++.++......|.+|... ++.|++|+.||
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DG 165 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDG 165 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCC
Confidence 9999999999999999999999999999999999999999998644 4677888888999999998 45788999999
Q ss_pred cEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEE--EEEEcCCCCEEEE
Q 003177 669 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH--SVCWNTSGEYLAS 746 (842)
Q Consensus 669 ~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~--sl~~spdg~~Las 746 (842)
+++.||++.|.....+- ..+|++++|+++++..++++.|+.|++.|-++|+.+..+++|.+.-. ..+++....++++
T Consensus 166 tvRtydiR~G~l~sDy~-g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~s 244 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYF-GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFS 244 (307)
T ss_pred cEEEEEeecceeehhhc-CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEe
Confidence 99999999988766554 47899999999999999999999999999999999999999987543 4567777889999
Q ss_pred Ee-CCeEEEEEcCCCCCceeEEEeecCCCc-eEEEEEeCCCCEEEEEEcCCeEEEE
Q 003177 747 VS-DELVRVWSIGSGSKGECIHELSCTGNK-FHSCVFHPTFPSLLVIGCYETLELW 800 (842)
Q Consensus 747 gs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~-I~sv~~spdg~~L~sgs~dg~I~Iw 800 (842)
|+ ||.|++||+... ..+..+..+... +.++.++|.-..|++++..+ +.+|
T Consensus 245 gSEDG~Vy~wdLvd~---~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 245 GSEDGKVYFWDLVDE---TQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred ccCCceEEEEEeccc---eeeeeeccCCceeEEeeecccCccceeEecCCc-eece
Confidence 99 999999999887 677777777776 89999999988788776655 4444
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.8e-27 Score=250.80 Aligned_cols=276 Identities=19% Similarity=0.275 Sum_probs=240.9
Q ss_pred CCCeEEEEEcCCCCE-EEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003177 560 TSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 638 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~-Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i 638 (842)
.+.|.+++|+|...+ +|+++ .-.|.||+..+....+++......|++++|..||++|+.|...|.|+|||+.+ ...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 356999999996554 44443 35799999998888888888889999999999999999999999999999654 5568
Q ss_pred eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCC-EEEEEEcCCeEEEEEC
Q 003177 639 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-RILAAAIENYISILDV 716 (842)
Q Consensus 639 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~-~l~~~s~dg~I~IwDl 716 (842)
+.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+. +.+-|.|.+|+|... .+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 88999999999999999999999999999999999999887643443 456699999999755 6788999999999999
Q ss_pred CCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003177 717 ETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 795 (842)
Q Consensus 717 ~t~-~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg 795 (842)
+.. ..+.++. |..+|..+.+-|.|..|++++...|+|||+.++. ..+.....|...|+|+++..++..|++++-|+
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 987 5666665 9999999999999999999999999999999774 45555666999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 796 TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 796 ~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
.|++||+.+.+.+.--...++|.+++.+|++..++.|-.||.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999999998876678899999999999999999999998754
No 66
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=2.9e-28 Score=261.27 Aligned_cols=248 Identities=18% Similarity=0.296 Sum_probs=219.8
Q ss_pred CeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcE
Q 003177 592 FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 670 (842)
Q Consensus 592 ~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 670 (842)
.+.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++-....+++++.+|..+|.+++|+.+|..+| +++.|+.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeecceee
Confidence 355678899999999999999 7899999999999999999987778999999999999999999988666 89999999
Q ss_pred EEEECCCCceeeEEeecCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 003177 671 RYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 748 (842)
Q Consensus 671 ~vwDl~t~~~i~~~~~~~~i~~v~~sp~g-~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 748 (842)
++||+++|+++..+.....++|+.|+|++ +.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+.+++++
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999999999999999999999999998 7899999999999999999999999999999999999999999999998
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----EEccCC--CCeeEEEE
Q 003177 749 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHD--KLVSSLAA 822 (842)
Q Consensus 749 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~----~~~~h~--~~V~sla~ 822 (842)
|+.++||+.+.....+.+. ..+.....+|..+|+++++++-+.|+.|.+|.+...-.+ .+.+|. +.-..+.|
T Consensus 363 dks~riWe~~~~v~ik~i~--~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIA--DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred CccEEEEEcCCCccchhhc--chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 8899999998874322222 223455678999999999999999999999997654333 566664 45677899
Q ss_pred eCCCCEEEEEeCCCcEEEcC
Q 003177 823 STVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 823 spdg~~Lasgs~DG~V~IWd 842 (842)
||||++|++|+.||.|.+||
T Consensus 441 SpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cCCCCeEEeecCCccEEEee
Confidence 99999999999999999997
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=266.10 Aligned_cols=270 Identities=24% Similarity=0.430 Sum_probs=241.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 636 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~-l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~ 636 (842)
.|...|.|..|. ..++++++.|.+|.+||..++..+.. +.+|.+.|.+++|..-+.+|++|+.|.+++|||+.++.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~- 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE- 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-
Confidence 467788898888 55899999999999999999999988 99999999999998778899999999999999988765
Q ss_pred eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 637 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD 715 (842)
Q Consensus 637 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwD 715 (842)
+...+.+|.+.|.++...+ .++++|+.|.+|++|++.++.++..+. +...|.++.++ +..+++|+.|+.|.+||
T Consensus 283 C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 5899999999999999874 478889999999999999999999999 78889999998 78999999999999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003177 716 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 794 (842)
Q Consensus 716 l~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d 794 (842)
+.+++++.++.+|...|.++.+... .++++|+ |++|++||+++.. +|+..+..|...+..+.+ .+.+|++++.|
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD 432 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSAD 432 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccc
Confidence 9999999999999999999988765 8888998 9999999998864 688899998888865554 45689999999
Q ss_pred CeEEEEECCCCeEE-EEcc-CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 795 ETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 795 g~I~Iwdl~~~~~~-~~~~-h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++|++||..+++++ .+.+ |...|.++++. ...+++++.||.+++||
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999999988 5555 56888888876 46788999999999997
No 68
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.6e-27 Score=247.69 Aligned_cols=277 Identities=20% Similarity=0.308 Sum_probs=236.7
Q ss_pred cccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 003177 506 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 585 (842)
Q Consensus 506 ~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~ 585 (842)
.+.....++|+++.|.+.-+|....+. .++...++.+|..+|..+.||||.++|++++.|..+.
T Consensus 231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~----------------~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 231 QFSHNGKYLASASKDSTAIIWIVVYDV----------------HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred EEcCCCeeEeeccCCceEEEEEEecCc----------------ceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 344455899999999999999665441 2567889999999999999999999999999999999
Q ss_pred EEecCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecC-ccceEEEEEcCCCCcEEEE
Q 003177 586 LWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCS 663 (842)
Q Consensus 586 vwd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h-~~~V~sl~fspdg~~llas 663 (842)
+||+.+|.....+. +|...+.+++|.|||..+++|+.|++|..||++... ...+.+- .-.|.+++..+||++++++
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITYDGKYVLLV 372 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcCCCcEEEEE
Confidence 99999999887774 356889999999999999999999999999998643 3333332 2569999999999977755
Q ss_pred EeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCC--EEEEEEcC-C
Q 003177 664 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ--VHSVCWNT-S 740 (842)
Q Consensus 664 gs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~--V~sl~~sp-d 740 (842)
+ .|..|++++.++..+...+..+.+|++++++.+++++++.-.+..|.+||++..+.+..+.+|+.. |..-||-- +
T Consensus 373 ~-~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~ 451 (519)
T KOG0293|consen 373 T-VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGN 451 (519)
T ss_pred e-cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCC
Confidence 4 699999999998888888888899999999999999999999999999999988888899988753 44445644 5
Q ss_pred CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC
Q 003177 741 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE 804 (842)
Q Consensus 741 g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~-~L~sgs~dg~I~Iwdl~~ 804 (842)
..++++|+ |+.|+||+..++ +.+..+.+|...|++++|+|..+ .+++++.||+|+||....
T Consensus 452 ~~fiaSGSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 452 DKFIASGSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cceEEecCCCceEEEEEccCC---ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 58999999 999999999998 89999999999999999999775 578888999999998754
No 69
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.1e-26 Score=243.65 Aligned_cols=276 Identities=24% Similarity=0.366 Sum_probs=243.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeE
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~ 640 (842)
..|+++...+....+++|+.|..+.++|......+.++++|...|+.+.|+++...+++++.|..|+||...... ....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cccc
Confidence 458888888887899999999999999999999999999999999999999999999999999999999998755 3566
Q ss_pred eecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec---CCeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 641 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVE 717 (842)
Q Consensus 641 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~---~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~ 717 (842)
...|..+|+.+..+|.|+++| +++.|+++.+.|++++.++...... -.+++.+|+|||-.|.+|..|+.|+|||+.
T Consensus 299 ~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred cccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 778999999999999988555 8899999999999999998887764 348999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCC
Q 003177 718 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYE 795 (842)
Q Consensus 718 t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~sv~~spdg~~L~sgs~dg 795 (842)
++..+..|.+|.++|..|.|+.+|.||+++. |+.|++||++... .+.++.. ...++.++.|...|.+|++++.+=
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~---n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK---NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc---ccceeeccccccceeEEEcCCCCeEEeeccee
Confidence 9999999999999999999999999999999 7889999999874 3333332 234799999999999999998877
Q ss_pred eEEEEECCCCe--EE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 796 TLELWNMTENK--TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 796 ~I~Iwdl~~~~--~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
.|++++-.+.. .+ .+..|.+..+++.|.....++++++.|..++|+
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 78887755543 33 566788899999999999999999999998886
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2.2e-26 Score=267.78 Aligned_cols=280 Identities=20% Similarity=0.293 Sum_probs=236.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEE--CCCcEEEEecCC------------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 003177 558 ASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 623 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs--~Dg~I~vwd~~t------------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D 623 (842)
.+...|.+|+.+|||..+|||+ .|+.++||+.+. .+.+.+...|.+.|+|+.|++||.+||+|++|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3455699999999999999999 899999998642 23345667899999999999999999999999
Q ss_pred CeEEEEEcCC----CC-------------ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee
Q 003177 624 RTVRVWDTEN----PD-------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 686 (842)
Q Consensus 624 g~I~IWDl~t----~~-------------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~ 686 (842)
+.|.||+... .. .++..+.+|...|.+++|+|++. ++++++.|++|.+||..+.+++.++..
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeeec
Confidence 9999999872 00 25678889999999999999865 888999999999999999999988874
Q ss_pred -cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC------CCEEEEEEcCCCCEEEEEe--CC---eEEE
Q 003177 687 -QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHSVCWNTSGEYLASVS--DE---LVRV 754 (842)
Q Consensus 687 -~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~------~~V~sl~~spdg~~Lasgs--Dg---~I~I 754 (842)
.+.|..+.|.|-|++|++-+.|++|+||++.+....+.+..+. ..+..+.|+|||.+|++.. .+ ++.|
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 5679999999999999999999999999988776666665543 3578899999999999876 33 7888
Q ss_pred EEcCCCCCceeEEEeecCCCceEEEEEeCC-------------CC----EEEEEEcCCeEEEEECCCCeEEE--EccCCC
Q 003177 755 WSIGSGSKGECIHELSCTGNKFHSCVFHPT-------------FP----SLLVIGCYETLELWNMTENKTLT--LSAHDK 815 (842)
Q Consensus 755 wDl~s~~~~~~i~~~~~~~~~I~sv~~spd-------------g~----~L~sgs~dg~I~Iwdl~~~~~~~--~~~h~~ 815 (842)
.+-.+. ++-..+.+|..++.++.|+|. .. .+++|+.|++|-||.....+++. ..-...
T Consensus 250 ieR~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 250 IERGTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred EecCCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 887655 667788899999999999872 11 57788899999999987777662 223467
Q ss_pred CeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 816 LVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 816 ~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
.|.+++|+|||..|+.||.||+|.+.
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 89999999999999999999999875
No 71
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.6e-25 Score=257.67 Aligned_cols=263 Identities=15% Similarity=0.221 Sum_probs=209.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEE-------------EEeccCCCCeEEEEEcC-CCCEEEEEeCCCeE
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-------------STLEEHTQWITDVRFSP-SLSRLATSSADRTV 626 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~-------------~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I 626 (842)
..|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++.+|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 34555666667666666666666667765443322 13678999999999999 88999999999999
Q ss_pred EEEEcCCCC------ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCC
Q 003177 627 RVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRL 699 (842)
Q Consensus 627 ~IWDl~t~~------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g 699 (842)
+|||+.+.. .++..+.+|...|.+++|+|++..+|++++.|++|+|||+++++.+..+. +...|.+++|+|++
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 999997643 24667889999999999999987789999999999999999998888776 45679999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCC-EEEEEEcCCCCEEEEEe-----CCeEEEEEcCCCCCceeEEEeec-C
Q 003177 700 GRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSC-T 772 (842)
Q Consensus 700 ~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~-V~sl~~spdg~~Lasgs-----Dg~I~IwDl~s~~~~~~i~~~~~-~ 772 (842)
..|++++.|+.|+|||+++++.+..+.+|.+. +..+.|.+++..|++++ |+.|++||+++... .+..... .
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d~ 258 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLDQ 258 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEeccCC
Confidence 99999999999999999999999999888765 45678999887777643 68999999987642 3333332 2
Q ss_pred CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEE--ccCCCCeeEEEEeCC
Q 003177 773 GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL--SAHDKLVSSLAASTV 825 (842)
Q Consensus 773 ~~~I~sv~~spdg~~L~sgs-~dg~I~Iwdl~~~~~~~~--~~h~~~V~sla~spd 825 (842)
...+..+.|++++..|++++ .|+.|++||+.+++.+.. ..+..++..++|.|.
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 34566678999999999887 599999999999887732 245567788888775
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.5e-27 Score=243.31 Aligned_cols=277 Identities=20% Similarity=0.327 Sum_probs=237.3
Q ss_pred cCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003177 508 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 587 (842)
Q Consensus 508 ~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vw 587 (842)
.+...++++||.|+.|++|.-...... +...+..-..+--|...|.|++||.|...||+|+.||.|+||
T Consensus 222 SPDgqyLvsgSvDGFiEVWny~~GKlr-----------KDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 222 SPDGQYLVSGSVDGFIEVWNYTTGKLR-----------KDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred CCCCceEeeccccceeeeehhccchhh-----------hhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 334489999999999999976554322 222333334456788999999999999999999999999999
Q ss_pred ecCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeC
Q 003177 588 CTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 666 (842)
Q Consensus 588 d~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~ 666 (842)
.+.+|.+++.|. .|+..|+|+.|+.|+..+++++.|.+|+|.-+.+++ +++.+.+|++.|+...|.++|.+++ +++.
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsSyvn~a~ft~dG~~ii-saSs 368 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSSYVNEATFTDDGHHII-SASS 368 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcCccccccceEEcCCCCeEE-EecC
Confidence 999999999996 899999999999999999999999999999999876 4899999999999999999988655 8999
Q ss_pred CCcEEEEECCCCceeeEEee---cCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEeC---CCCCEEEEEEcC
Q 003177 667 NSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNT 739 (842)
Q Consensus 667 Dg~I~vwDl~t~~~i~~~~~---~~~i~~v~~sp~g-~~l~~~s~dg~I~IwDl~t~~~~~~l~~---h~~~V~sl~~sp 739 (842)
||+|++|+.++.+|+.+|+. ...|.++...|.. ..++++...++|+|.++. |..++.+.. ..+...+.+.+|
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSp 447 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSP 447 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecC
Confidence 99999999999999999885 3457788777754 567888888999999986 455666543 345677888999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 740 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 801 (842)
Q Consensus 740 dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwd 801 (842)
.|.++++.+ |+.++.|.+.++ ..-+.+..|+..+..++-+|..+.|++-+.||.+++|.
T Consensus 448 kGewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 448 KGEWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCcEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999988 999999999998 67778888999999999999999999999999999995
No 73
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.3e-26 Score=255.06 Aligned_cols=267 Identities=22% Similarity=0.389 Sum_probs=231.7
Q ss_pred EEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeec-C
Q 003177 566 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-H 644 (842)
Q Consensus 566 v~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~-h 644 (842)
++|+. ...||+|. ...|++|+..++........+.+.|+++.|+++|.+|++|..+|.|.|||..+.+. +..+.+ |
T Consensus 183 ldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-~~~~~~~h 259 (484)
T KOG0305|consen 183 LDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-TRTLRGSH 259 (484)
T ss_pred hhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-cccccCCc
Confidence 67773 44777765 35899999999887766666689999999999999999999999999999987664 666777 9
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeE-Ee-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 645 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 722 (842)
Q Consensus 645 ~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~-~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~ 722 (842)
...|.+++|. ..++.+|+.|+.|.++|++..+.... +. |...|+.+.|++++.++++|+.|+.+.|||.....+.
T Consensus 260 ~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 9999999999 44788999999999999998765554 43 4567999999999999999999999999999888999
Q ss_pred EEEeCCCCCEEEEEEcCC-CCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc--CCe
Q 003177 723 LKLQGHKNQVHSVCWNTS-GEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YET 796 (842)
Q Consensus 723 ~~l~~h~~~V~sl~~spd-g~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~--dg~ 796 (842)
..+..|...|..++|+|- ..+||+|+ |++|++||+.++ ..+..+. ....|.++.|++..+.|+++.. ++.
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCc
Confidence 999999999999999994 56778766 999999999988 5555544 4788999999999988887665 448
Q ss_pred EEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 797 LELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 797 I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|.||++.+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 999999987776 7889999999999999999999999999999996
No 74
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.4e-26 Score=230.81 Aligned_cols=293 Identities=17% Similarity=0.273 Sum_probs=238.4
Q ss_pred EEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCe
Q 003177 514 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 593 (842)
Q Consensus 514 l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~ 593 (842)
+.+|+.+..|..|...-..+. .......++.....+.+|.+.|+|++.+ +.++|+|+.|-+|+|||+.+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~-------~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKG-------CTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCccc-------cccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh
Confidence 456778777777744333221 1122345667788889999999999996 8899999999999999999999
Q ss_pred EEEEeccCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEE
Q 003177 594 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 671 (842)
Q Consensus 594 ~~~~l~~h~~~I~~l~fspdg~--~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 671 (842)
.+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|+...- ..+..+.+|.+.|+.|+.+|.++ +..+.+.|+.++
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr 152 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR 152 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence 9999999999999999999765 8999999999999999875 56899999999999999999977 666888899999
Q ss_pred EEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC
Q 003177 672 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE 750 (842)
Q Consensus 672 vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg 750 (842)
.||+-+|+...........+.+.|+|.|.+|+++.. +.|-||.+++......+. ....+.|+.|... .+|++|. |+
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~-~~L~vG~d~~ 229 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREIE-NPKRILCATFLDG-SELLVGGDNE 229 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhhh-ccccceeeeecCC-ceEEEecCCc
Confidence 999999998888887777788999999998877765 568899888766555544 3356788888644 4555555 88
Q ss_pred eEEEEEcCCCCCceeEEEeecCCCceEEEEE--eCCCCEEEEEEcCCeEEEEECCCC-----eEEEEccCCCCeeEEEEe
Q 003177 751 LVRVWSIGSGSKGECIHELSCTGNKFHSCVF--HPTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDKLVSSLAAS 823 (842)
Q Consensus 751 ~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~--spdg~~L~sgs~dg~I~Iwdl~~~-----~~~~~~~h~~~V~sla~s 823 (842)
.|.+||..+. .+...+..|..+|-.+.+ .|++.+|+++++||.|+|||++.. +.+........++|+...
T Consensus 230 ~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 230 WISLKDTDSD---TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK 306 (362)
T ss_pred eEEEeccCCC---ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence 9999999885 788999999999999874 567889999999999999999776 344444556677777654
No 75
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.5e-26 Score=254.69 Aligned_cols=273 Identities=20% Similarity=0.364 Sum_probs=230.8
Q ss_pred cccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 003177 506 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 585 (842)
Q Consensus 506 ~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~ 585 (842)
.|.+...++.++-..+.|.+|+-.=. ..+..+..|.++|..++|+|...++++|+.|.+|+
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYRM~-------------------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIk 76 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYRMG-------------------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIK 76 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhhhh-------------------hHHhhhhccCCccceeeecCCCCeEEecCCccEEE
Confidence 35566688888889999999944211 12455779999999999999999999999999999
Q ss_pred EEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEe
Q 003177 586 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 665 (842)
Q Consensus 586 vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 665 (842)
||+.++.+++.++.+|-+.|..+.|++.-.+|+++|+|-+|+||+..+.+ ++..++||...|.|..|+|..+ ++++++
T Consensus 77 VWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhptED-lIVSaS 154 (1202)
T KOG0292|consen 77 VWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPTED-LIVSAS 154 (1202)
T ss_pred EEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCccc-eEEEec
Confidence 99999999999999999999999999999999999999999999999865 6999999999999999999855 888999
Q ss_pred CCCcEEEEECCCCc---------------------------ee--eEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 666 NNSEIRYWSINNGS---------------------------CA--GVFK-CQSGATQMRFQPRLGRILAAAIENYISILD 715 (842)
Q Consensus 666 ~Dg~I~vwDl~t~~---------------------------~i--~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwD 715 (842)
-|-+|+|||+..-+ ++ ..+. |..+|+-++|+|.-..|++|+.|..|++|.
T Consensus 155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWr 234 (1202)
T KOG0292|consen 155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 234 (1202)
T ss_pred ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEE
Confidence 99999999985311 11 1111 245689999999999999999999999999
Q ss_pred CCCC--eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003177 716 VETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 792 (842)
Q Consensus 716 l~t~--~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs 792 (842)
+... -.+-+..+|.+.|.++-|+|..++|++.+ |++|+|||+... ..+.++......++.++.+|..+.+++|-
T Consensus 235 mnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---t~v~tfrrendRFW~laahP~lNLfAAgH 311 (1202)
T KOG0292|consen 235 MNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---TSVQTFRRENDRFWILAAHPELNLFAAGH 311 (1202)
T ss_pred eccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc---cceeeeeccCCeEEEEEecCCcceeeeec
Confidence 8754 34567789999999999999999999988 999999999887 78888888889999999999998555554
Q ss_pred cCCeEEEEECC
Q 003177 793 CYETLELWNMT 803 (842)
Q Consensus 793 ~dg~I~Iwdl~ 803 (842)
|+-+.||.+.
T Consensus 312 -DsGm~VFkle 321 (1202)
T KOG0292|consen 312 -DSGMIVFKLE 321 (1202)
T ss_pred -CCceEEEEEc
Confidence 4444445443
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-26 Score=261.40 Aligned_cols=246 Identities=19% Similarity=0.318 Sum_probs=202.4
Q ss_pred EEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--------------------------------CC-----
Q 003177 594 VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--------------------------------PD----- 635 (842)
Q Consensus 594 ~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t--------------------------------~~----- 635 (842)
....+. .|.+.|+++.|++||+|||+|+.|+.|+||.+.. ..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 334455 8999999999999999999999999999998764 00
Q ss_pred ----------------------ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEE
Q 003177 636 ----------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM 693 (842)
Q Consensus 636 ----------------------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v 693 (842)
.++..+.||.+.|.+|.|+.++ +|++++.|.+|++|++...+|+.+|.|..-|+||
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEecCCeeEEE
Confidence 2345677899999999999763 6779999999999999999999999999999999
Q ss_pred EEeC-CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-
Q 003177 694 RFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS- 770 (842)
Q Consensus 694 ~~sp-~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~- 770 (842)
+|+| |.++|++|+-|+.|+||++...+.+.-.. -..-|+++||.|||++.++|+ +|.+++|+..........+...
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 9999 67889999999999999998876665443 458899999999999999999 9999999998763211111111
Q ss_pred ----cCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCeEE-EEccCCC--CeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 771 ----CTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTL-TLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 771 ----~~~~~I~sv~~spdg~-~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~--~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.....|+.+.|.|... .+++.+.|..|+|||.++..++ .+.++.. .-....|+.||++|+++++|..|+||+
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 1123799999987654 5999999999999999887776 5554432 334568889999999999999999996
No 77
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.5e-26 Score=232.93 Aligned_cols=289 Identities=19% Similarity=0.307 Sum_probs=246.9
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003177 549 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 628 (842)
Q Consensus 549 ~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 628 (842)
.+..++.+.||.+.|+.++.......+.+++.|.+.+||.++++.++..+.+|.+.|++|+|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 45667888999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EEcC------C---------------------------------CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCc
Q 003177 629 WDTE------N---------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 669 (842)
Q Consensus 629 WDl~------t---------------------------------~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 669 (842)
|... . -..++..+.+|...|.+..|...+. -+++++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeecccc
Confidence 9621 0 0124567889999999999998776 4559999999
Q ss_pred EEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003177 670 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASV 747 (842)
Q Consensus 670 I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~-~~~~~l~~h~~~V~sl~~spdg~~Lasg 747 (842)
-.+||+++++.+..+.. ....+.++-+|..+.+++++.|.++++||++.. ..+..|.+|...|+++.|..+.+. +++
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~v-VSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRV-VSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCce-eec
Confidence 99999999999998875 456888899999999999999999999999955 567889999999999999877664 555
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-----EccCCCCeeEEE
Q 003177 748 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-----LSAHDKLVSSLA 821 (842)
Q Consensus 748 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~-----~~~h~~~V~sla 821 (842)
+ |.+|+|||+++.. ..+.++. ...+++.++++..++.|+.--.+..|++||+....+.. -.+|...|+|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 5 8899999999864 3455544 46789999999999888888888899999999887653 348999999999
Q ss_pred EeCCC--CEEEEEeCCCcEEEcC
Q 003177 822 ASTVN--GMVASASHDKCVKIWK 842 (842)
Q Consensus 822 ~spdg--~~Lasgs~DG~V~IWd 842 (842)
|..+- .-|++|+.|..+.-|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 98654 3578999999988885
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.5e-25 Score=228.15 Aligned_cols=271 Identities=18% Similarity=0.292 Sum_probs=223.3
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEecCC-CeEE-EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003177 557 PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 633 (842)
Q Consensus 557 ~gH~~~V~sv~fSp-dg~~Lasgs~Dg~I~vwd~~t-~~~~-~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t 633 (842)
..-.+.|.+++||| ...+|+.++.||+|++|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 34567799999999 566777999999999999986 3333 44567999999999999999999999999999999998
Q ss_pred CCceeeEeecCccceEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEE
Q 003177 634 PDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 712 (842)
Q Consensus 634 ~~~~i~~~~~h~~~V~sl~fspdg~-~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~ 712 (842)
+. +..+..|..+|.++.|-+... .+|++|+.|++|++||.+....+.++..++.+.++..-. ..++++..+..|.
T Consensus 104 ~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~ 179 (347)
T KOG0647|consen 104 GQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIA 179 (347)
T ss_pred CC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEE
Confidence 74 677888999999999987543 478899999999999999999999999888888876654 4688888999999
Q ss_pred EEECCCCeEEEEE--eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC---------CceEEEE
Q 003177 713 ILDVETQVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---------NKFHSCV 780 (842)
Q Consensus 713 IwDl~t~~~~~~l--~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~---------~~I~sv~ 780 (842)
+|+++++...... ..-+-.++||+...|....+.|+ +|.+.|..+..+.. ..-..+++|. ..|++++
T Consensus 180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceE
Confidence 9999876433221 11334678999888888888888 99999999987633 3333445544 3478899
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEE
Q 003177 781 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 832 (842)
Q Consensus 781 ~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasg 832 (842)
|+|....|+++++||++.+||-.....+ ....|..+|++.+|+.+|.++|-+
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 9999999999999999999998876655 667899999999999999988755
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.5e-25 Score=256.51 Aligned_cols=265 Identities=23% Similarity=0.419 Sum_probs=232.2
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEE-ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEec
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~-l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~ 589 (842)
++++.+|+.|.++.+|..... ..+.. +.||.+.|.+++|..-+.+|++|+.|.+++|||+
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~-------------------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNG-------------------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred cCeEEecCCCceeEEeecccc-------------------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 678899999999988844332 33455 8999999999999987889999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCc
Q 003177 590 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 669 (842)
Q Consensus 590 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 669 (842)
.++.+..++.+|.+.|.++...+ .++++|+.|.+|++|++.++. .+..+.+|...|.++.++ ..++++|+.|++
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGT 352 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec---CCEEEEEecCce
Confidence 99999999999999999998854 578889999999999999765 488888899999999998 347889999999
Q ss_pred EEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003177 670 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASV 747 (842)
Q Consensus 670 I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~-~~~~~l~~h~~~V~sl~~spdg~~Lasg 747 (842)
|++||+.+++++..+.. ...|.++.+... ..++.|+.|+.|++||+++. +++..+.+|.+-+.++.+ .+++|+++
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~ 429 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSS 429 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEec
Confidence 99999999999999985 456888877765 88999999999999999999 999999999998866654 67888888
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 748 S-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 748 s-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
+ |++|++||..++ .+++.+.+ +...|..+++. ...+++++.++.+++||+++++..
T Consensus 430 ~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 430 SADGTIKLWDAEEG---ECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cccccEEEeecccC---ceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 8 999999999988 78888887 56788888776 457999999999999999999877
No 80
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.8e-26 Score=243.10 Aligned_cols=268 Identities=21% Similarity=0.347 Sum_probs=229.8
Q ss_pred cCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003177 508 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 587 (842)
Q Consensus 508 ~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vw 587 (842)
......+++|+.|..|++|..... ....+.+|.|..+.|+++.|.+++++++.++.|+.+++|
T Consensus 184 l~~sdtlatgg~Dr~Ik~W~v~~~-----------------k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 184 LRNSDTLATGGSDRIIKLWNVLGE-----------------KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred ccCcchhhhcchhhhhhhhhcccc-----------------hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 334356789999999999955333 134567888999999999999999999999999999999
Q ss_pred ecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC
Q 003177 588 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 667 (842)
Q Consensus 588 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 667 (842)
++...+...++.+|.+.|+++.|......+++|+.|.+|++||+.... +.+++. ....+.+|+.+ ...++++-.|
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l-~~S~cnDI~~~---~~~~~SgH~D 321 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVL-PGSQCNDIVCS---ISDVISGHFD 321 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh-eecccc-ccccccceEec---ceeeeecccc
Confidence 999999999999999999999999887779999999999999999744 344443 33456677766 3367799999
Q ss_pred CcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC----CCCEEEEEEcCCCCE
Q 003177 668 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEY 743 (842)
Q Consensus 668 g~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h----~~~V~sl~~spdg~~ 743 (842)
+.|++||+++..+.......+.|+++..++++..+++++.|..+.++|+++......+... ....+.++|||++.|
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y 401 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY 401 (459)
T ss_pred cceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCce
Confidence 9999999999999999999999999999999999999999999999999999888777642 235788999999999
Q ss_pred EEEEe-CCeEEEEEcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003177 744 LASVS-DELVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELW 800 (842)
Q Consensus 744 Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~--~I~sv~~spdg~~L~sgs~dg~I~Iw 800 (842)
+++|+ ||.|+||++.++ ++...+..... .|++++|+|.|..+++++.++.+.+|
T Consensus 402 vaAGS~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 402 VAAGSADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eeeccCCCcEEEEEccCc---eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 99999 999999999998 55555555444 59999999999999999999999998
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=240.65 Aligned_cols=242 Identities=19% Similarity=0.260 Sum_probs=212.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCC
Q 003177 556 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP 634 (842)
Q Consensus 556 l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~t~ 634 (842)
+....+.|++++|-.||++||+|...|.|+|||+++...++.+.+|..+|..+.|+|. +..|++|++|+.+++||+.+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 3344567999999999999999999999999998776677889999999999999995 667888999999999999986
Q ss_pred CceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-ceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 003177 635 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 713 (842)
Q Consensus 635 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~I 713 (842)
. ....+.+|+..|.|.+|+|-.++++++|+.||.|++||++.. ..+..+.+..+|..+.+-|.|..|++++ .+.|+|
T Consensus 144 ~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkV 221 (487)
T KOG0310|consen 144 Y-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKV 221 (487)
T ss_pred E-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEE
Confidence 5 366889999999999999999999999999999999999987 7888999999999999999987776654 578999
Q ss_pred EECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003177 714 LDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 791 (842)
Q Consensus 714 wDl~t~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sg 791 (842)
||+.+| +.+..+..|...|+|+++..++..|++++ |+.|+|||+.+. +.++.+. -.++|.+++++|++..+++|
T Consensus 222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~-~~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWK-YPGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeee-cccceeeEEecCCCceEEEe
Confidence 999965 55555666999999999999999999999 999999997765 6777665 46889999999999999999
Q ss_pred EcCCeEEEEECC
Q 003177 792 GCYETLELWNMT 803 (842)
Q Consensus 792 s~dg~I~Iwdl~ 803 (842)
..+|.+.+-+..
T Consensus 298 msnGlv~~rr~~ 309 (487)
T KOG0310|consen 298 MSNGLVSIRRRE 309 (487)
T ss_pred cccceeeeehhh
Confidence 999987776443
No 82
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.5e-24 Score=207.21 Aligned_cols=290 Identities=19% Similarity=0.258 Sum_probs=237.8
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC------C---------eEEEEeccCCCCeEEEEEcC
Q 003177 548 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------F---------TVKSTLEEHTQWITDVRFSP 612 (842)
Q Consensus 548 ~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t------~---------~~~~~l~~h~~~I~~l~fsp 612 (842)
..|..+.++.. +..|.+++|+|.|.+.|+|+..++++|.-... + ...+.-+.|.+.|+|.+|+|
T Consensus 21 ~~f~~i~~l~d-sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 21 KHFEAINILED-SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cceEEEEEecc-hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 44556666654 45699999999999999999999998874321 1 11133457999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCc----eeeEeecCccceEEEEEcCC---CCcEEEEEe-CCCcEEEEECCCCceeeEE
Q 003177 613 SLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPS---KEDLLCSCD-NNSEIRYWSINNGSCAGVF 684 (842)
Q Consensus 613 dg~~Latgs~Dg~I~IWDl~t~~~----~i~~~~~h~~~V~sl~fspd---g~~llasgs-~Dg~I~vwDl~t~~~i~~~ 684 (842)
+|.+|++|+.|++|++.-++.... .-..+..|.+.|..++|..+ +..+|++++ .|..|++-|...|.....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999999999987664322 22467779999999999743 455666654 5788999999999988888
Q ss_pred eecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeC--C-----CCCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003177 685 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--H-----KNQVHSVCWNTSGEYLASVS-DELVRVWS 756 (842)
Q Consensus 685 ~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~--h-----~~~V~sl~~spdg~~Lasgs-Dg~I~IwD 756 (842)
..+.+-.-.-++-++..+++|+.|.+|++||++-..++.++.. | .+.|.+++..|.|++|++|. |....+||
T Consensus 180 sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 180 SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred cCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 7655433334555678899999999999999999888887653 2 35789999999999999999 99999999
Q ss_pred cCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-----eEEEEccCCCCeeEEEEeCCCCEEEE
Q 003177 757 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDKLVSSLAASTVNGMVAS 831 (842)
Q Consensus 757 l~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~-----~~~~~~~h~~~V~sla~spdg~~Las 831 (842)
++.+ ..+..+..|...|.++.|+|...++++++.|..|++-|+... ..+....|...+..+.|+|..-.+++
T Consensus 260 irg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 260 IRGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred eeCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence 9998 899999999999999999999999999999999999998754 23366689999999999999988999
Q ss_pred EeCCCcEEEc
Q 003177 832 ASHDKCVKIW 841 (842)
Q Consensus 832 gs~DG~V~IW 841 (842)
.+.|.++.+|
T Consensus 337 ssadkt~tlw 346 (350)
T KOG0641|consen 337 SSADKTATLW 346 (350)
T ss_pred ccCcceEEEe
Confidence 9999999999
No 83
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.4e-26 Score=252.17 Aligned_cols=270 Identities=23% Similarity=0.421 Sum_probs=233.1
Q ss_pred CCCCEEEEEECCCcEEEEecCCCe------EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ceeeEee
Q 003177 570 PDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFT 642 (842)
Q Consensus 570 pdg~~Lasgs~Dg~I~vwd~~t~~------~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~-~~i~~~~ 642 (842)
|.+++|++|+.||.|++|++.... ...+++.|.++|+++....+++.|+++|.|-+|++|+..... .+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 367789999999999999876322 356788999999999999999999999999999999998764 6678899
Q ss_pred cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc--eeeEEe----------ecCCeeEEEEeCCCCEEEEEEcCCe
Q 003177 643 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK----------CQSGATQMRFQPRLGRILAAAIENY 710 (842)
Q Consensus 643 ~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~--~i~~~~----------~~~~i~~v~~sp~g~~l~~~s~dg~ 710 (842)
.|...|.|+++-.....++|+|+-|+.|.+||++++. .+..+. ....|.+++..+.+..|+.|+.++.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 9999999999944446799999999999999999873 232222 2345889999999989999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003177 711 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 789 (842)
Q Consensus 711 I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~ 789 (842)
|++||.++.+.+..+.+|...|.++..++||..+++++ ||+|++||+.-. .|+.++..|...|+++..+|+-.+++
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCCCcceEE
Confidence 99999999999999999999999999999999999988 999999999877 89999999999999999999999999
Q ss_pred EEEcCCeEEEEECCCC-eEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 790 VIGCYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 790 sgs~dg~I~Iwdl~~~-~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+|+.|+.|+.-|+.+. +...+...+.+|..+..+.+..-+-+++.|+.|+-|.
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999999984 4445556677788887776555556778888898884
No 84
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=6.1e-24 Score=244.52 Aligned_cols=245 Identities=18% Similarity=0.269 Sum_probs=191.1
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEecCCC-------eEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCC
Q 003177 554 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR 624 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSp-dg~~Lasgs~Dg~I~vwd~~t~-------~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg 624 (842)
..+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.+. +.+..+.+|...|.+|+|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 45789999999999999 8899999999999999999764 3467788999999999999975 6999999999
Q ss_pred eEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCC--eeEEEEeCCCCEE
Q 003177 625 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRI 702 (842)
Q Consensus 625 ~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~--i~~v~~sp~g~~l 702 (842)
+|+|||+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+..+.. +..+.|.++++.+
T Consensus 149 tVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCCCe-EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 99999999865 4677888999999999999976 677999999999999999998887765433 4567889988888
Q ss_pred EEEE----cCCeEEEEECCCCe-EEEEEeC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec-CC
Q 003177 703 LAAA----IENYISILDVETQV-CRLKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-TG 773 (842)
Q Consensus 703 ~~~s----~dg~I~IwDl~t~~-~~~~l~~-h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~-~~ 773 (842)
++++ .|+.|++||+++.. ++..... +...+....|++++.+|++++ |+.|++||+.++ ..+..... +.
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~---~~~~~~~~~s~ 303 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE---RLTFCSSYSSV 303 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC---ceEEEeeccCC
Confidence 8765 36899999998754 3333332 334566678999999888775 999999999987 33333322 34
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003177 774 NKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 805 (842)
Q Consensus 774 ~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~ 805 (842)
.++..++|.|.-. +-...-...++|.+...
T Consensus 304 ~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 304 EPHKGLCMMPKWS--LDTRKCEIARFYALTYH 333 (493)
T ss_pred CCCcceEeccccc--ccccceeeeEEEEecCC
Confidence 5677888888532 21222224455555443
No 85
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.4e-25 Score=221.82 Aligned_cols=248 Identities=20% Similarity=0.315 Sum_probs=207.1
Q ss_pred eEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEecC-CCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEE
Q 003177 551 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVR 627 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fSpdg-~~Lasgs~Dg~I~vwd~~-t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~ 627 (842)
.+...+.- .+.+..++|+++. ..+++++.||+++|||+. ...++..++.|...|.++.|++ +...++++|.|++|+
T Consensus 52 ~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiK 130 (311)
T KOG0277|consen 52 QECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIK 130 (311)
T ss_pred EEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceE
Confidence 34444432 4458999999954 578889999999999965 3457788999999999999998 466788899999999
Q ss_pred EEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CceeeEEeecCCeeEEEEeC-CCCEEEEE
Q 003177 628 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQP-RLGRILAA 705 (842)
Q Consensus 628 IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~~~~i~~v~~sp-~g~~l~~~ 705 (842)
+|+...+. .+.++.+|...|....|+|....++++++.|+++++||++. |+.+....+...+.++.|+. +.+.++++
T Consensus 131 LW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 131 LWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred eecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEec
Confidence 99998765 48899999999999999999999999999999999999986 45444333455899999987 45567788
Q ss_pred EcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe
Q 003177 706 AIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 782 (842)
Q Consensus 706 s~dg~I~IwDl~t~-~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~s 782 (842)
+.|+.|++||+++- .++..+.+|.-.|+.++|||.. .+|++++ |-+++|||..... .++.+...|..-+..+.|+
T Consensus 210 ~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~Dws 287 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLDWS 287 (311)
T ss_pred CCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEeccccc
Confidence 89999999999975 6788899999999999999965 5788888 9999999998653 5666677788888888888
Q ss_pred CC-CCEEEEEEcCCeEEEEEC
Q 003177 783 PT-FPSLLVIGCYETLELWNM 802 (842)
Q Consensus 783 pd-g~~L~sgs~dg~I~Iwdl 802 (842)
+- ...++.++.|+.++||+.
T Consensus 288 ~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 288 LFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccCceeeecccccceeeecc
Confidence 74 567899999999999984
No 86
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=222.54 Aligned_cols=285 Identities=19% Similarity=0.273 Sum_probs=214.8
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEE--EEe--ccCCCCeEEEEEcCCCCEEEE-EeCCCeEE
Q 003177 553 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL--EEHTQWITDVRFSPSLSRLAT-SSADRTVR 627 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~--~~l--~~h~~~I~~l~fspdg~~Lat-gs~Dg~I~ 627 (842)
+.+|++|.+.|+|++|+.||++||+++.|+.|+||+++..... +.+ .-.-+..+.++|.||-+-+++ +-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4678999999999999999999999999999999999864321 111 112235688999999766554 44566899
Q ss_pred EEEcCCCC---cee--------eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEE
Q 003177 628 VWDTENPD---YSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 695 (842)
Q Consensus 628 IWDl~t~~---~~i--------~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~ 695 (842)
+|.+...+ ... .....|.-.|..+-.... ..+|++++.|..|.+|+++ |..+..+.. ...-...+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 99875321 111 122235555666665544 4578899999999999999 888877765 345677899
Q ss_pred eCCCCEEEEEEcCCeEEEEECC---CC-----eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC----CC
Q 003177 696 QPRLGRILAAAIENYISILDVE---TQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG----SK 762 (842)
Q Consensus 696 sp~g~~l~~~s~dg~I~IwDl~---t~-----~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~----~~ 762 (842)
+|+|+++++++..-.|++|++- .| ..++.+++|...|..++|+++.+.+++.+ ||+++|||+.-. ..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999863 22 34678899999999999999999999999 999999998632 11
Q ss_pred ceeEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEeCCC
Q 003177 763 GECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDK 836 (842)
Q Consensus 763 ~~~i~~~----~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~--~~~~h~~~V~sla~spdg~~Lasgs~DG 836 (842)
.+.+.+. ...+.....+.++|.|..|+++ ....|++|..++++.. ....|...|++|+|+++|+++++|+ |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 2222222 2234445589999999966554 4557999999998877 3447999999999999999999987 45
Q ss_pred cEEEc
Q 003177 837 CVKIW 841 (842)
Q Consensus 837 ~V~IW 841 (842)
.+++.
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 66654
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.3e-25 Score=221.60 Aligned_cols=241 Identities=24% Similarity=0.362 Sum_probs=215.6
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce-eeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 003177 596 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 674 (842)
Q Consensus 596 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwD 674 (842)
+.+.+|...|.+|+|+.+|..|++|+.|+++.+|+++..... -....+|.+.|-.++|+|....+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 456789999999999999999999999999999999865432 1356789999999999999999999999999999999
Q ss_pred CCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEE
Q 003177 675 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR 753 (842)
Q Consensus 675 l~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~ 753 (842)
++.++++..+....+-..+.|+|+|.+++++..|..|.++|.++.+.+.... ....+..++|+.++.+++... -|+|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 9999999999988888899999999999999999999999999988776665 556788889987777666655 79999
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEE
Q 003177 754 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 832 (842)
Q Consensus 754 IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasg 832 (842)
|...... +.+..+..|.....++.|+|+|+++++|+.|..+.+||+...-++ .+..++-+|..++|+.||++||+|
T Consensus 173 ILsypsL---kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYPSL---KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEecccc---ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 9999866 788999999999999999999999999999999999999988776 677899999999999999999999
Q ss_pred eCCCcEEE
Q 003177 833 SHDKCVKI 840 (842)
Q Consensus 833 s~DG~V~I 840 (842)
|+|..|-|
T Consensus 250 SEDh~IDI 257 (313)
T KOG1407|consen 250 SEDHFIDI 257 (313)
T ss_pred CccceEEe
Confidence 99988754
No 88
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=7.2e-25 Score=242.44 Aligned_cols=338 Identities=15% Similarity=0.187 Sum_probs=259.2
Q ss_pred CCcccCCCceEEeccCCCceEEeecCCCCC----------C---------------------------------------
Q 003177 504 PNQLTDMDRFVDDGSLDDNVESFLSPDDAD----------P--------------------------------------- 534 (842)
Q Consensus 504 ~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~----------~--------------------------------------- 534 (842)
.+.+.-..+|+++|+.++.|++|.+..-.. +
T Consensus 263 AnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscV 342 (1080)
T KOG1408|consen 263 ANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCV 342 (1080)
T ss_pred cceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEE
Confidence 344455678999999999999985433210 0
Q ss_pred -CcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC-----------CCEEEEEECCCcEEEEecCCCeEEEE-----
Q 003177 535 -RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----------GKLLATGGHDKKAVLWCTESFTVKST----- 597 (842)
Q Consensus 535 -~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpd-----------g~~Lasgs~Dg~I~vwd~~t~~~~~~----- 597 (842)
.+...-+|++.+-........+--|...|+.+.--|- ...++|++.|++|++||++.+..-.+
T Consensus 343 YndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNi 422 (1080)
T KOG1408|consen 343 YNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNI 422 (1080)
T ss_pred EcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeeccc
Confidence 1112234666665555566666678888888876551 23588999999999999875211000
Q ss_pred --------e------------------------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCc
Q 003177 598 --------L------------------------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 645 (842)
Q Consensus 598 --------l------------------------~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~ 645 (842)
. .+....|.+++.+|++.+||+|..-|+++||++.+-+. ......|.
T Consensus 423 ls~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-~~~~eAHe 501 (1080)
T KOG1408|consen 423 LSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-TCFMEAHE 501 (1080)
T ss_pred chhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-hhheeccc
Confidence 0 02334689999999999999999999999999987654 66778899
Q ss_pred cceEEEEEcCC--CCcEEEEEeCCCcEEEEECCC-CceeeEEee-cCCeeEEEEeCCC--CEEEEEEcCCeEEEEECCCC
Q 003177 646 TTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRL--GRILAAAIENYISILDVETQ 719 (842)
Q Consensus 646 ~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t-~~~i~~~~~-~~~i~~v~~sp~g--~~l~~~s~dg~I~IwDl~t~ 719 (842)
..|.|+.|+.. +..+|++++.|..|.|||+.. ...+.++.. ...|+++.|...| ...++++.|..|.+--....
T Consensus 502 sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~ 581 (1080)
T KOG1408|consen 502 SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA 581 (1080)
T ss_pred ceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccc
Confidence 99999999853 456899999999999999964 345555554 5679999998877 56788888887765333321
Q ss_pred eEEEEEeC-----CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003177 720 VCRLKLQG-----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 793 (842)
Q Consensus 720 ~~~~~l~~-----h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~ 793 (842)
.....+.. ....+..++..|..++++++. |..|+|||+.+++..+..+--..|++....+...|.|.||++.+.
T Consensus 582 ~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs 661 (1080)
T KOG1408|consen 582 SSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS 661 (1080)
T ss_pred cCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec
Confidence 11122222 234688999999999999999 999999999999544444444557788899999999999999999
Q ss_pred CCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 794 YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 794 dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|.+|.+||..+++++ ...+|...|+.+.|.+|.+.|++.+.||+|.||+
T Consensus 662 dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 662 DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred CCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 999999999999999 7889999999999999999999999999999995
No 89
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=8.3e-25 Score=254.67 Aligned_cols=287 Identities=21% Similarity=0.293 Sum_probs=231.2
Q ss_pred CCCceEEecc--CCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003177 509 DMDRFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 586 (842)
Q Consensus 509 ~~~~~l~~Gs--~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~v 586 (842)
+....+++|+ .|+.+.+|....-.+. . ......--..+.+...|.+.|+|+.|++||++||+|+.|+.|.|
T Consensus 23 pdg~~~aTgGq~~d~~~~iW~~~~vl~~--~-----~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i 95 (942)
T KOG0973|consen 23 PDGVKFATGGQVLDGGIVIWSQDPVLDE--K-----EEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI 95 (942)
T ss_pred CCceeEecCCccccccceeeccccccch--h-----hhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence 3335678888 8888889943322111 0 00001112346778899999999999999999999999999999
Q ss_pred EecCC------------------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccce
Q 003177 587 WCTES------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 648 (842)
Q Consensus 587 wd~~t------------------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V 648 (842)
|.... .+++..+.+|+..|.+++|+|++.+|++++.|++|.|||..+. ..+..+.+|.+.|
T Consensus 96 W~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~V 174 (942)
T KOG0973|consen 96 WERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLV 174 (942)
T ss_pred eeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeecccccc
Confidence 98652 3467888999999999999999999999999999999999997 5689999999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-------cCCeeEEEEeCCCCEEEEEEc----CCeEEEEECC
Q 003177 649 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAI----ENYISILDVE 717 (842)
Q Consensus 649 ~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-------~~~i~~v~~sp~g~~l~~~s~----dg~I~IwDl~ 717 (842)
..+.|.|-|+ +||+-++|++|+||++.+..+.+.+.. ...+..+.|+|||.+|++... ...+.|.+-.
T Consensus 175 KGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~ 253 (942)
T KOG0973|consen 175 KGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG 253 (942)
T ss_pred cceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC
Confidence 9999999987 677999999999999887666666653 234778999999999988764 2478899998
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCC------C-------C----EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003177 718 TQVCRLKLQGHKNQVHSVCWNTS------G-------E----YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 779 (842)
Q Consensus 718 t~~~~~~l~~h~~~V~sl~~spd------g-------~----~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 779 (842)
+.+.-..+.+|..++.++.|+|. . . .+|+|+ |++|.||..........+ .......|..+
T Consensus 254 tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi--~~lf~~SI~Dm 331 (942)
T KOG0973|consen 254 TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI--HNLFNKSIVDM 331 (942)
T ss_pred CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh--hhhhcCceeee
Confidence 88989999999999999999981 1 1 456677 999999998665332222 23346789999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003177 780 VFHPTFPSLLVIGCYETLELWNMTENK 806 (842)
Q Consensus 780 ~~spdg~~L~sgs~dg~I~Iwdl~~~~ 806 (842)
+|+|||..|++++.||+|.++.+...+
T Consensus 332 sWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 332 SWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 999999999999999999999987643
No 90
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=2.1e-23 Score=225.08 Aligned_cols=264 Identities=13% Similarity=0.111 Sum_probs=208.2
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCceeeEeecCccceEE
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 650 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~s 650 (842)
+.++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.++.. ...+..+. .+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGP-DPEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCC-CccE
Confidence 35788999999999999999998888876544 6789999999876 5667889999999987653 44444443 3578
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEEEeCCC
Q 003177 651 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHK 729 (842)
Q Consensus 651 l~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg-~I~IwDl~t~~~~~~l~~h~ 729 (842)
++|+|+++.++++++.++.|++||+.+.+.+..+.....+..++|+|++..++++..++ .+.+||.++++....+. ..
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VD 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cC
Confidence 89999998777777788999999999988888777656678999999999999888765 57788999887766554 23
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecC-------CCceEEEEEeCCCCEEEEE-EcCCeEEE
Q 003177 730 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHPTFPSLLVI-GCYETLEL 799 (842)
Q Consensus 730 ~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~-------~~~I~sv~~spdg~~L~sg-s~dg~I~I 799 (842)
..+.+++|++++.+|++++ ++.|++||+.++ +++..+..+ ......++|+|++++++++ +.++.|.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR---KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc---eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 4567899999999886544 889999999987 444433321 1123568899999986665 45668999
Q ss_pred EECCCCeEEEEccCCCCeeEEEEeCCCCEEEEE-eCCCcEEEcC
Q 003177 800 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 842 (842)
Q Consensus 800 wdl~~~~~~~~~~h~~~V~sla~spdg~~Lasg-s~DG~V~IWd 842 (842)
||+.+++.+....+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 999998887554566689999999999998876 4689999997
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.8e-24 Score=219.92 Aligned_cols=269 Identities=19% Similarity=0.265 Sum_probs=221.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003177 559 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 638 (842)
Q Consensus 559 H~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i 638 (842)
-...|++|.|+|.+..|++++.||.+++||+........+ .|..++.+++|.+ ...+++|+.||.|+++|+.++. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--E 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--c
Confidence 3567999999999889999999999999999987666555 4899999999986 5689999999999999999865 4
Q ss_pred eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 639 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 718 (842)
Q Consensus 639 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t 718 (842)
..+..|...|.||.+++..+ .+++|+.|++|++||.+.......+.....|.++... ++.|++|+.+..|.+||+++
T Consensus 88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 56777999999999998755 6669999999999999987777777777777777665 57899999999999999998
Q ss_pred CeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC-CceeEEEeecCC---------CceEEEEEeCCC
Q 003177 719 QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS-KGECIHELSCTG---------NKFHSCVFHPTF 785 (842)
Q Consensus 719 ~~~~~~l~--~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~-~~~~i~~~~~~~---------~~I~sv~~spdg 785 (842)
........ ..+-.++||++.|++.-+++++ ||.|.+=.+.... .......|++|. .+|++++|+|-.
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 75544322 2445789999999888888888 9988887666541 112333444443 468999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeC
Q 003177 786 PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH 834 (842)
Q Consensus 786 ~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~ 834 (842)
..|++|++||.|.+||+.+.+.+ .+...+..|.+++|+.||..||+++.
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999999998877 55566678999999999999999874
No 92
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.9e-23 Score=203.14 Aligned_cols=294 Identities=18% Similarity=0.269 Sum_probs=234.9
Q ss_pred ccCCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003177 502 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 581 (842)
Q Consensus 502 ~~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~D 581 (842)
+-...+.+...+.++||-..+.++..-++-.+.+.. -+..+..+....+.-+.|.+.|+|.+|||+|.+||+|+.|
T Consensus 35 irav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 35 IRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred eeeEEecCCCceEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 344556666788999999999988755554433211 1122222333455567899999999999999999999999
Q ss_pred CcEEEEecCC--CeE---EEEeccCCCCeEEEEEcCC----CCEEEEEeC-CCeEEEEEcCCCCceeeEeecCccceEEE
Q 003177 582 KKAVLWCTES--FTV---KSTLEEHTQWITDVRFSPS----LSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSL 651 (842)
Q Consensus 582 g~I~vwd~~t--~~~---~~~l~~h~~~I~~l~fspd----g~~Latgs~-Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl 651 (842)
++|++.-... ... ...+.-|.+.|..++|..+ +.+|++++. |..|++-|...+. ....+.+|++.|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~sghtghilal 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHALSGHTGHILAL 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-cceeecCCcccEEEE
Confidence 9999975443 221 2456679999999999764 556776653 6677887887765 488899999999887
Q ss_pred E-EcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee--------cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 652 D-FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 722 (842)
Q Consensus 652 ~-fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--------~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~ 722 (842)
- |+ ..++++|+.|.+|++||++-..++.++.. .+.|..++..|.|+.+++|-.|....+||++.++.+
T Consensus 190 yswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 190 YSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI 266 (350)
T ss_pred EEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee
Confidence 4 44 55899999999999999999999887763 245889999999999999999999999999999999
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003177 723 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 800 (842)
Q Consensus 723 ~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iw 800 (842)
..+..|...|.|+.|+|...|+++|+ |..|++-|+...-. .-.+.....|...+..|.|+|..-.+++.+.|.++.+|
T Consensus 267 q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 267 QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEe
Confidence 99999999999999999999999999 99999999975421 12445566788999999999999889999999999999
Q ss_pred ECC
Q 003177 801 NMT 803 (842)
Q Consensus 801 dl~ 803 (842)
-+.
T Consensus 347 a~~ 349 (350)
T KOG0641|consen 347 ALN 349 (350)
T ss_pred ccC
Confidence 764
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.3e-24 Score=230.17 Aligned_cols=284 Identities=21% Similarity=0.280 Sum_probs=228.2
Q ss_pred CCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccC--CCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003177 504 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG--KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 581 (842)
Q Consensus 504 ~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~--~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~D 581 (842)
...+.+.+.++.+++.+++|--|......+......+. ++. .+..+.+-. ++|.+.|.+++.|+||+|||+|+.|
T Consensus 147 ~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev~k~~~~~~k~~r--~~h~keil~~avS~Dgkylatgg~d 223 (479)
T KOG0299|consen 147 SVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EVLKSHGNPLKESR--KGHVKEILTLAVSSDGKYLATGGRD 223 (479)
T ss_pred EEEeeccccceeecCCCcceeeeehhcCcccccccccc-hhhhhccCCCCccc--ccccceeEEEEEcCCCcEEEecCCC
Confidence 33445566788999999999999776655432222221 111 233333322 4999999999999999999999999
Q ss_pred CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEE
Q 003177 582 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 661 (842)
Q Consensus 582 g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~ll 661 (842)
..|.||+..+.+.+..+.+|.+.|.+++|......|++++.|++|++|+++.... +.++.+|.+.|..|+...-. .++
T Consensus 224 ~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~v~~IdaL~re-R~v 301 (479)
T KOG0299|consen 224 RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLYGHQDGVLGIDALSRE-RCV 301 (479)
T ss_pred ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHhCCccceeeechhccc-ceE
Confidence 9999999999999999999999999999999888999999999999999997654 78899999999999987664 477
Q ss_pred EEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeC-C-----------C
Q 003177 662 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-H-----------K 729 (842)
Q Consensus 662 asgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~-h-----------~ 729 (842)
.+|+.|+++++|++.....+....+.+.+.|++|-.+ ..+++|+.+|.|.+|++-+.+++++... | .
T Consensus 302 tVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~ 380 (479)
T KOG0299|consen 302 TVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGN 380 (479)
T ss_pred EeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccc
Confidence 7788999999999965554444445567889998765 7899999999999999999988876542 2 2
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003177 730 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 794 (842)
Q Consensus 730 ~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d 794 (842)
.+|++++..|...++++|+ +|.|++|-+..+-. ...+..+. ..+.|++++|+++|.+|++|...
T Consensus 381 ~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 381 FWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred cceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccc
Confidence 3899999999999999999 99999999988732 24444444 56789999999999988777543
No 94
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.4e-24 Score=237.41 Aligned_cols=240 Identities=21% Similarity=0.322 Sum_probs=212.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce
Q 003177 559 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 637 (842)
Q Consensus 559 H~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~ 637 (842)
+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|++.....
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 378899999999999999999999999999999999999988 99999999997 678999999999999999987765
Q ss_pred eeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCC-CEEEEEE--cCCeEEE
Q 003177 638 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRL-GRILAAA--IENYISI 713 (842)
Q Consensus 638 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g-~~l~~~s--~dg~I~I 713 (842)
...+.+|...|..+.|++++. .+++|+.|+.|.|||.........+. +...|..++|+|-. +.|++|+ .|+.|++
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred hhhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 566889999999999999976 78899999999999997666655554 56779999999954 4555554 4899999
Q ss_pred EECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003177 714 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 790 (842)
Q Consensus 714 wDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~s 790 (842)
||..++..+..+. ..+.|.+|.|++..+-|+++. ++.|.||++.+. ..+..+.+|...|..++++|||..|++
T Consensus 373 wn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 373 WNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred EEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCCCCEEEE
Confidence 9999999888776 567899999999987666654 779999999886 788899999999999999999999999
Q ss_pred EEcCCeEEEEECCCC
Q 003177 791 IGCYETLELWNMTEN 805 (842)
Q Consensus 791 gs~dg~I~Iwdl~~~ 805 (842)
++.|.++++|++-+.
T Consensus 449 ~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 449 GAADETLRFWNLFDE 463 (484)
T ss_pred ecccCcEEeccccCC
Confidence 999999999998764
No 95
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=5.3e-23 Score=232.57 Aligned_cols=308 Identities=16% Similarity=0.282 Sum_probs=245.4
Q ss_pred EEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCe
Q 003177 514 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 593 (842)
Q Consensus 514 l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~ 593 (842)
+..|+..+.+.+|..... +.+.++.++...|+++.=+|-=..+|.|..+|+|.|++++.++
T Consensus 175 IvvGs~~G~lql~Nvrt~-------------------K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk 235 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTG-------------------KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK 235 (910)
T ss_pred EEEeecCCcEEEEEeccC-------------------cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCc
Confidence 345666677777654433 4578889999999999999988899999999999999999999
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEE
Q 003177 594 VKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 672 (842)
Q Consensus 594 ~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~v 672 (842)
.+.+|+...+.|+.++|..||..+ ++|+..|.+.+||++..+........|.+.|..+.|.+... ++++++.|+.+++
T Consensus 236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~ 314 (910)
T KOG1539|consen 236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKV 314 (910)
T ss_pred EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCceeE
Confidence 999997556999999999998765 55666699999999976654444556766677666666533 5556666665555
Q ss_pred EECCCCc-----------------ee------------------------------------------------------
Q 003177 673 WSINNGS-----------------CA------------------------------------------------------ 681 (842)
Q Consensus 673 wDl~t~~-----------------~i------------------------------------------------------ 681 (842)
|=.+++. |+
T Consensus 315 ~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k 394 (910)
T KOG1539|consen 315 WVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLK 394 (910)
T ss_pred EEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhc
Confidence 5322100 00
Q ss_pred ------------------------------------------eEEeec------CCeeEEEEeCCCCEEEEEEcCCeEEE
Q 003177 682 ------------------------------------------GVFKCQ------SGATQMRFQPRLGRILAAAIENYISI 713 (842)
Q Consensus 682 ------------------------------------------~~~~~~------~~i~~v~~sp~g~~l~~~s~dg~I~I 713 (842)
.++... ..+++++.++.|++.+.|...|.|.+
T Consensus 395 ~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~ 474 (910)
T KOG1539|consen 395 LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDR 474 (910)
T ss_pred CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEE
Confidence 011111 23678889999999999999999999
Q ss_pred EECCCCeEEEEE---eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc--------------------------
Q 003177 714 LDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-------------------------- 763 (842)
Q Consensus 714 wDl~t~~~~~~l---~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~-------------------------- 763 (842)
|++.+|.....+ ..|.++|++++.+.-++.+++++ +|.+++||+......
T Consensus 475 fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 475 FNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD 554 (910)
T ss_pred EEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC
Confidence 999999888888 47999999999998888888888 999999998764310
Q ss_pred ------------eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEE
Q 003177 764 ------------ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 831 (842)
Q Consensus 764 ------------~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Las 831 (842)
+.++.+.+|.+.|+.++|||||++|++++.|++|++||+.++.++-...-+.+++++.|+|+|.+|||
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT 634 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLAT 634 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEE
Confidence 11224567899999999999999999999999999999999999977788899999999999999999
Q ss_pred EeCC-CcEEEc
Q 003177 832 ASHD-KCVKIW 841 (842)
Q Consensus 832 gs~D-G~V~IW 841 (842)
+..| .-|++|
T Consensus 635 ~Hvd~~gIylW 645 (910)
T KOG1539|consen 635 VHVDQNGIYLW 645 (910)
T ss_pred EEecCceEEEE
Confidence 9988 569998
No 96
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=8.6e-25 Score=222.59 Aligned_cols=293 Identities=13% Similarity=0.215 Sum_probs=232.8
Q ss_pred ccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003177 507 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 586 (842)
Q Consensus 507 l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~v 586 (842)
+.....++++|+.|..|++++...-... .....+...+.......+++|-.|.++|+++.|+|...+|++|+.|++|++
T Consensus 120 fs~DG~lvATGsaD~SIKildvermlak-s~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 120 FSPDGSLVATGSADASIKILDVERMLAK-SKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eCCCCcEEEccCCcceEEEeehhhhhhh-cchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 3444579999999999999966522111 111122222222333568899999999999999999999999999999999
Q ss_pred EecCCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceee--EeecCccceEEEEEcCCCCcEEE
Q 003177 587 WCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKEDLLC 662 (842)
Q Consensus 587 wd~~t~~~~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~--~~~~h~~~V~sl~fspdg~~lla 662 (842)
||...-...+.++ ....+|.+|.|+|.|.+|++|..-.++++||+++-.+.+. --..|++.|+++.+++.++ +.+
T Consensus 199 FDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYv 277 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYV 277 (430)
T ss_pred EecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc-EEE
Confidence 9987543332222 3457899999999999999999999999999998654222 2246899999999999977 667
Q ss_pred EEeCCCcEEEEECCCCceeeEEee---cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC--C---CEEE
Q 003177 663 SCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK--N---QVHS 734 (842)
Q Consensus 663 sgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~--~---~V~s 734 (842)
+++.||.|++||--+++|+.++.. ...|++..|..+++++++.+.|..+++|++.+++++..+.+-. + .-+.
T Consensus 278 TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtq 357 (430)
T KOG0640|consen 278 TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQ 357 (430)
T ss_pred EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhh
Confidence 999999999999999999998863 4569999999999999999999999999999999999887642 1 2244
Q ss_pred EEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 735 VCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 735 l~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
..|+....|++.-. .+.+.-||.++... ....-.+|.+.+..+.-+|.+.-+++++.|-.+++|--+
T Consensus 358 AvFNhtEdyVl~pDEas~slcsWdaRtadr--~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 358 AVFNHTEDYVLFPDEASNSLCSWDARTADR--VALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhcCccceEEccccccCceeeccccchhh--hhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 56777888888776 66899999998743 222334689999999999999999999999999999643
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.3e-24 Score=239.87 Aligned_cols=316 Identities=15% Similarity=0.226 Sum_probs=256.2
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEec
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~ 589 (842)
..+++.+|+.|+.|+.|....+.... .-..+..+..|.+.|..+....+++.|++++.|-+|++|+.
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~-------------s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~ 102 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEP-------------STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNA 102 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCc-------------ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeec
Confidence 44689999999999999766553210 01135678899999999999999999999999999999999
Q ss_pred CCC--eEEEEeccCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEEcCCCCc---------eeeEee-cCccceEEEEEcCC
Q 003177 590 ESF--TVKSTLEEHTQWITDVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHPS 656 (842)
Q Consensus 590 ~t~--~~~~~l~~h~~~I~~l~f-spdg~~Latgs~Dg~I~IWDl~t~~~---------~i~~~~-~h~~~V~sl~fspd 656 (842)
..+ -+..++..|.+.|.|+++ .++...+|+|+-|+.|.|||++++.. ....+. ++...|++++-++.
T Consensus 103 ~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t 182 (735)
T KOG0308|consen 103 HKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT 182 (735)
T ss_pred ccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence 877 577889999999999999 78889999999999999999996521 122333 78899999999998
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEE
Q 003177 657 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV 735 (842)
Q Consensus 657 g~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl 735 (842)
| .+|++|+..+.|++||.++++.+..+.. ...|.++..+++|..+++++.||+|++||+...+|+.++..|...|.++
T Consensus 183 ~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 183 G-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL 261 (735)
T ss_pred c-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence 7 5888999999999999999887777764 5679999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-----
Q 003177 736 CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT----- 809 (842)
Q Consensus 736 ~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~----- 809 (842)
..+|+-.++++|+ |+.|+.-|+++.. ++.. +-....+|..+..+....-+.+++.|+.|+-|...-...+.
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~~--~~tl-ick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~ 338 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDLRNPA--KSTL-ICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDL 338 (735)
T ss_pred eeCCCcceEEecCCCCcEEecccCCch--hheE-eecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCC
Confidence 9999999999999 9999999999863 2222 22346677778877666667888899999999764321110
Q ss_pred --------------------EccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 810 --------------------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 810 --------------------~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.......|...++-.|.++++|-...|.|.+||
T Consensus 339 ~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 339 DFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred CcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 001112233344556778999999999999997
No 98
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=8.4e-24 Score=235.09 Aligned_cols=275 Identities=16% Similarity=0.267 Sum_probs=231.2
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEE--EEeccCCCCeEE-EEEcC-CCCEEEEEeCCCeE
Q 003177 551 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITD-VRFSP-SLSRLATSSADRTV 626 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~--~~l~~h~~~I~~-l~fsp-dg~~Latgs~Dg~I 626 (842)
..-..+.+|+..|..|++.++ ..+++++.||++++|+-.....+ ..+.+|.+.|.+ ++|.+ ++-.|++|+.|.+|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 345678999999999998754 48999999999999997654443 456778888887 88886 45569999999999
Q ss_pred EEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEE
Q 003177 627 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAA 705 (842)
Q Consensus 627 ~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~ 705 (842)
.+|...... ++.++.+|...|.|++...++. +++|+.|.++++|-+. ++...+. |...|..+...|+. .+++|
T Consensus 84 ~v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTg 157 (745)
T KOG0301|consen 84 IVFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTG 157 (745)
T ss_pred EEEecCCCC-chhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEec
Confidence 999998754 6899999999999999876654 6799999999999874 4444444 45678999999986 89999
Q ss_pred EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003177 706 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 785 (842)
Q Consensus 706 s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg 785 (842)
+.|..|++|.- ++.+.+|.+|...|+.+++-+++.+|.++.||.|++|++ ++ +++.++.+|.+-+.++....++
T Consensus 158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMALSD 231 (745)
T ss_pred cCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cC---ceeeeeeccceEEEEEEecCCC
Confidence 99999999986 678899999999999999998888777767999999999 44 7999999999999999988888
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEccCCC-CeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 786 PSLLVIGCYETLELWNMTENKTLTLSAHDK-LVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 786 ~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~-~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
..|++++.|++++||+.. ++.....|.. .|+++.+-++|. |++|+.||.|+||
T Consensus 232 ~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 899999999999999977 5554444544 899999888876 5678889999998
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.2e-23 Score=224.82 Aligned_cols=273 Identities=21% Similarity=0.291 Sum_probs=225.6
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEE----EE---e-----------ccCCCCeEEEEEcCCC
Q 003177 553 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----ST---L-----------EEHTQWITDVRFSPSL 614 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~----~~---l-----------~~h~~~I~~l~fspdg 614 (842)
+..+..|.-+|+||+++||++++++++.|++|.-|++.+++.. .+ + +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 7788899999999999999999999999999999998877633 11 0 2688889999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEE-eecCCeeEE
Q 003177 615 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQM 693 (842)
Q Consensus 615 ~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~~i~~v 693 (842)
+||++|+.|..|.||+.++.+ .+..+.+|.+.|.+++|-.... -+++++.|+.|++|++.....+.++ .+.+.|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~e-hv~~~~ghr~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLE-HVKVFKGHRGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcccc-hhhcccccccceeeeeeecCcc-ceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 999999999999999999866 4788999999999999986544 5668999999999999987766554 467889999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-
Q 003177 694 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC- 771 (842)
Q Consensus 694 ~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~- 771 (842)
.....++.+-+++.|.++++|++. .+....+.+|.+.+-|++|-.+. .+++|+ +|.|.+|++.+.. ++.....
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~KKk---plf~~~~A 367 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLLKKK---PLFTSRLA 367 (479)
T ss_pred chhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeecccC---ceeEeecc
Confidence 988888888888899999999994 44556777899999999997555 455666 9999999998763 3333211
Q ss_pred -----------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe----EEEEccCCCCeeEEEEeCCCCEEEEE
Q 003177 772 -----------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK----TLTLSAHDKLVSSLAASTVNGMVASA 832 (842)
Q Consensus 772 -----------~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~----~~~~~~h~~~V~sla~spdg~~Lasg 832 (842)
+...|++++..|....+++|+.+|.|++|-+.++- ++.-..-.+.|++++|+++|+.|++|
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 11378999999999999999999999999998882 33333567889999999999966655
No 100
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=4.6e-22 Score=214.61 Aligned_cols=286 Identities=14% Similarity=0.124 Sum_probs=212.4
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEecC
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 590 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~L-asgs~Dg~I~vwd~~ 590 (842)
.++++++.|+.+.+|..... ..+..+..|.. +.+++|+|+++.+ ++++.++.|++||..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 45677888899999965322 12344444543 6789999999976 566788999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCc
Q 003177 591 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 669 (842)
Q Consensus 591 t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 669 (842)
+++.+..+..+.. +..++|+|+++.++++ +.|+.|++||+.+.. .+..+. +...+.+++|+|++..++++...+..
T Consensus 62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNM 138 (300)
T ss_pred CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEee-CCCCcceEEECCCCCEEEEEecCCCe
Confidence 9988877765544 5788999999977655 568999999998754 344443 23457889999998865544433346
Q ss_pred EEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEEeCCC-----C--CEEEEEEcCCC
Q 003177 670 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK-----N--QVHSVCWNTSG 741 (842)
Q Consensus 670 I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s-~dg~I~IwDl~t~~~~~~l~~h~-----~--~V~sl~~spdg 741 (842)
+.+||.++++.+..+.....+..+.|++++..+++++ .++.|++||+++++.+..+..+. . ....++|+|++
T Consensus 139 ~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 218 (300)
T TIGR03866 139 AHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG 218 (300)
T ss_pred EEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence 7788999888776665556678899999999887665 58999999999988776654221 1 23568899999
Q ss_pred CEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEccCCCCee
Q 003177 742 EYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVS 818 (842)
Q Consensus 742 ~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs-~dg~I~Iwdl~~~~~~~~~~h~~~V~ 818 (842)
++++++. ++.|.+||+.++ +.+..+. +...+.+++|+|++.+|++++ .++.|.+||+.+++++.........+
T Consensus 219 ~~~~~~~~~~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 294 (300)
T TIGR03866 219 KTAFVALGPANRVAVVDAKTY---EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPW 294 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCC---cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccc
Confidence 9865543 778999999876 4443332 345788999999999998875 58899999999999874444557778
Q ss_pred EEEEeC
Q 003177 819 SLAAST 824 (842)
Q Consensus 819 sla~sp 824 (842)
.++++|
T Consensus 295 ~~~~~~ 300 (300)
T TIGR03866 295 GVVVRP 300 (300)
T ss_pred eeEeCC
Confidence 888865
No 101
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.1e-23 Score=225.63 Aligned_cols=277 Identities=18% Similarity=0.261 Sum_probs=234.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCC---eEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 632 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~---~~~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 632 (842)
.|..-|.++++|...++++||+. |.|+|||+... ..+..+. .....|.++.+.|||+.|++|++-.+|.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 68888999999999999999986 78999998642 2333332 345779999999999999999999999999998
Q ss_pred CCCceee-EeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCe
Q 003177 633 NPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY 710 (842)
Q Consensus 633 t~~~~i~-~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~ 710 (842)
.....++ .+....-.++.++.+||.+ +.++|..||.|.|||+.+...++.|.. .+++.||.++++|..|.+|+-|++
T Consensus 496 apTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 7664333 2333334577899999976 566778899999999999999999985 678999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003177 711 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 789 (842)
Q Consensus 711 I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~ 789 (842)
|+.||++++..+.... ..+.|.++.++|.+.+|++|- .+.|.|...... ..+.+.-|+..|.++.|.+.|++++
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCceee
Confidence 9999999987665543 567899999999999999999 788888887654 3455667899999999999999999
Q ss_pred EEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 790 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 790 sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
+.+.|+.+..|...-|..+--......|.++.++.|.++|+||+.|....||
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 9999999999999988887666777899999999999999999999887776
No 102
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3.2e-23 Score=211.30 Aligned_cols=277 Identities=18% Similarity=0.258 Sum_probs=218.5
Q ss_pred ccccCCCCCeeEEEEecCCCCcccccCCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEec
Q 003177 478 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 557 (842)
Q Consensus 478 ~~~~~~s~~~s~~~~~~~~~~~~~~~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~ 557 (842)
+...++.++.+.+.|++- .+.++++||.|++|++|...+.... .-+...
T Consensus 21 ev~~pP~DsIS~l~FSP~--------------~~~~~~A~SWD~tVR~wevq~~g~~-----------------~~ka~~ 69 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQ--------------ADNLLAAGSWDGTVRIWEVQNSGQL-----------------VPKAQQ 69 (347)
T ss_pred ecCCCcccchheeEeccc--------------cCceEEecccCCceEEEEEecCCcc-----------------cchhhh
Confidence 455566677888888872 3478889999999999977654211 013446
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCC
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPD 635 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~--~Latgs~Dg~I~IWDl~t~~ 635 (842)
.|.++|.+++|+.||..+++|+.|+.+++||+.++. +..+..|.++|.++.|-+... .|+|||.|++|+.||++...
T Consensus 70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence 799999999999999999999999999999999985 456778999999999988655 89999999999999999754
Q ss_pred ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceee-EEe--ecCCeeEEEEeCCCCEEEEEEcCCeEE
Q 003177 636 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFK--CQSGATQMRFQPRLGRILAAAIENYIS 712 (842)
Q Consensus 636 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~-~~~--~~~~i~~v~~sp~g~~l~~~s~dg~I~ 712 (842)
++.++. -.+.|++++.-. .+++.+..++.|.+|+++++.... ... ..-.+.|+++..+...++.|+.+|.+.
T Consensus 149 -pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 149 -PVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA 223 (347)
T ss_pred -eeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence 344443 456788877653 377788889999999997654332 221 234588999999988899999999999
Q ss_pred EEECCCC--eEEEEEeCCCC---------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003177 713 ILDVETQ--VCRLKLQGHKN---------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 780 (842)
Q Consensus 713 IwDl~t~--~~~~~l~~h~~---------~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 780 (842)
|..+..+ +.-++|+-|.. .|.+|+|+|....|++.+ ||++.+||-... ..+.....+..+|+++.
T Consensus 224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpItcc~ 300 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPITCCS 300 (347)
T ss_pred EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCccceeE
Confidence 9988876 55556666652 577899999877777766 999999998776 56777778899999999
Q ss_pred EeCCCCEEEEEEcC
Q 003177 781 FHPTFPSLLVIGCY 794 (842)
Q Consensus 781 ~spdg~~L~sgs~d 794 (842)
|+.+|.+++.+.+.
T Consensus 301 fn~~G~ifaYA~gY 314 (347)
T KOG0647|consen 301 FNRNGSIFAYALGY 314 (347)
T ss_pred ecCCCCEEEEEeec
Confidence 99999988876553
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=6.6e-24 Score=228.54 Aligned_cols=286 Identities=15% Similarity=0.223 Sum_probs=221.5
Q ss_pred CcccccCCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 003177 498 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT 577 (842)
Q Consensus 498 ~~~~~~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Las 577 (842)
|+-.++...++.....+++|+.|.+|++|+...-.. .. ..|+.+ .+.-...|.++.|++.|..|++
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda----s~--------~~fr~l--~P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA----SM--------RSFRQL--QPCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccc----cc--------hhhhcc--CcccccccceeeecCCCCeEEE
Confidence 444555666677778899999999999996543211 11 112222 2344567999999999999888
Q ss_pred EECCCcEEEEecCCCeEEEEe------------ccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeeEee--
Q 003177 578 GGHDKKAVLWCTESFTVKSTL------------EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFT-- 642 (842)
Q Consensus 578 gs~Dg~I~vwd~~t~~~~~~l------------~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~t~~~~i~~~~-- 642 (842)
.+....++|+|-+........ ++|...++|.+|+|+ ...++|++.||+++|||+++.+.....+.
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence 888889999997665544333 579999999999996 45789999999999999987664333332
Q ss_pred ---cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEE--e--e--cCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 003177 643 ---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--K--C--QSGATQMRFQPRLGRILAAAIENYISI 713 (842)
Q Consensus 643 ---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~--~--~--~~~i~~v~~sp~g~~l~~~s~dg~I~I 713 (842)
+..-.++.++|+++++. ||+|+.||.|.+|+..+...-..+ . | ...|+|+.|+++|++|++-+.|+.+++
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred cCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 23457899999999885 778888999999998643322111 1 2 237999999999999999999999999
Q ss_pred EECCCC-eEEEEEeCC--CCCEEEEEEcCCCCEEEEEe-------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003177 714 LDVETQ-VCRLKLQGH--KNQVHSVCWNTSGEYLASVS-------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 783 (842)
Q Consensus 714 wDl~t~-~~~~~l~~h--~~~V~sl~~spdg~~Lasgs-------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~sp 783 (842)
||++.. +++....+- ..+-+.++|||+.++|++|. .+.+.+||..+. ..+..+......|..|.|+|
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---eeEEEecCCCceEEEEeecc
Confidence 999975 566555542 33567899999999999986 347999998887 67778777889999999999
Q ss_pred CCCEEEEEEcCCeEEEEE
Q 003177 784 TFPSLLVIGCYETLELWN 801 (842)
Q Consensus 784 dg~~L~sgs~dg~I~Iwd 801 (842)
.-+.|++++.||.++||-
T Consensus 468 kLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 468 KLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred hhhheeeecCCCceEEEE
Confidence 999999999999998873
No 104
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=214.48 Aligned_cols=276 Identities=20% Similarity=0.316 Sum_probs=221.5
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEee
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 642 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~ 642 (842)
-.||.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|++||+.|+|+|.|..|.+||+..+.. +..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~-l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP-LKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc-eeEEE
Confidence 78999999999999999999999999999998899999999999999999999999999999999999998873 44444
Q ss_pred cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee------cCCeeEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 643 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIENYISILDV 716 (842)
Q Consensus 643 ~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~------~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl 716 (842)
...+|+.+.|+|.+.+.++++-.+..-.+.++..++.. .+.. .....+..|.+.|+++++|...|.+.+||.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 67899999999988777766665665666666543221 1111 112334568899999999999999999999
Q ss_pred CCCeEEEEEeCCC-CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------CceeEEEeec--CCCceEEEEEeCCCC
Q 003177 717 ETQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGECIHELSC--TGNKFHSCVFHPTFP 786 (842)
Q Consensus 717 ~t~~~~~~l~~h~-~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~------~~~~i~~~~~--~~~~I~sv~~spdg~ 786 (842)
.+.+++..++-.. ..|..+.++..|++|+.-+ |..|+.|++..-. ..+..+.+.. ....-.+|+|+.+|.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 9999999888665 7899999999999999877 9999999987321 1111122111 233457899999999
Q ss_pred EEEEEEcCC-eEEEEECCCCeEEE-EccCC-CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 787 SLLVIGCYE-TLELWNMTENKTLT-LSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 787 ~L~sgs~dg-~I~Iwdl~~~~~~~-~~~h~-~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|+++++... .++||....|.+++ +.+.. ....++.|+|-...|++- ..|.|+||.
T Consensus 263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 999888544 89999999999985 44555 567889999998888877 779999994
No 105
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.7e-23 Score=212.82 Aligned_cols=258 Identities=19% Similarity=0.324 Sum_probs=208.9
Q ss_pred EEEEECCCcEEEEecCC------------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEee
Q 003177 575 LATGGHDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 642 (842)
Q Consensus 575 Lasgs~Dg~I~vwd~~t------------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~ 642 (842)
|++|++...|.-+++.. ...+..+..|.+.|++++. ++.++|+|+.|-+|+|||+.... .+..+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~-qlg~ll 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK-QLGILL 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh-hhccee
Confidence 56677766666665431 2235667889999999999 58899999999999999999754 477888
Q ss_pred cCccceEEEEEcCCCC--cEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003177 643 GHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ 719 (842)
Q Consensus 643 ~h~~~V~sl~fspdg~--~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~ 719 (842)
.|.+.|+++.|.+.-. ++| +|+.||.|.+|+....+++..++. ...|+.++++|.++..++.+.|+.+++||+-++
T Consensus 81 ~HagsitaL~F~~~~S~shLl-S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLL-SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred ccccceEEEEecCCcchhhee-eecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 8999999999998753 455 999999999999999999998885 455999999999999999999999999999988
Q ss_pred eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003177 720 VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 799 (842)
Q Consensus 720 ~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~I 799 (842)
+.-+.+. -....+.|.|+|.|.+++.+....|-||.+.+. .....+. ....+.++.|. ++..|++|+.++.|.+
T Consensus 160 r~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A---~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 160 RVAFVLN-LKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNA---SVFREIE-NPKRILCATFL-DGSELLVGGDNEWISL 233 (362)
T ss_pred ccceeec-cCCcceeeEEcCCCCEEEEEeccEEEEEecccH---hHhhhhh-ccccceeeeec-CCceEEEecCCceEEE
Confidence 7666554 223345599999999999999888999999875 2222222 22445555554 4557999999999999
Q ss_pred EECCCCeEE-EEccCCCCeeEEEE--eCCCCEEEEEeCCCcEEEcC
Q 003177 800 WNMTENKTL-TLSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 800 wdl~~~~~~-~~~~h~~~V~sla~--spdg~~Lasgs~DG~V~IWd 842 (842)
||.++..+. .+.+|...|-++.+ .|++.+|+|+|.||.|+|||
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred eccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 999987776 67799999999985 45678999999999999997
No 106
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.7e-23 Score=223.34 Aligned_cols=283 Identities=17% Similarity=0.252 Sum_probs=237.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC--CeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCC
Q 003177 559 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPD 635 (842)
Q Consensus 559 H~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t--~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~t~~ 635 (842)
..+.|+||.|+|...+|++++.|+.++||-++. ...+..+.-...+|.+++|.|+|. .+++++....++.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 356799999999999999999999999997763 445677777788999999999999 89999999999999998765
Q ss_pred ce-eeEeecCc-cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 003177 636 YS-LRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 713 (842)
Q Consensus 636 ~~-i~~~~~h~-~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~I 713 (842)
.. +....++. ..+..+..+++++ +|+..+..|.|.+....+++.+..++..+.+..++|+.+++.|++++.+|.|++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 31 22233333 3567788899987 666888899999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC---CCceeEEEeecCCCceEEEEEeCCCCEE
Q 003177 714 LDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVRVWSIGSG---SKGECIHELSCTGNKFHSCVFHPTFPSL 788 (842)
Q Consensus 714 wDl~t~~~~~~l~~h~~-~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~---~~~~~i~~~~~~~~~I~sv~~spdg~~L 788 (842)
||++...+++.+....+ .-+++|.++++.|||+|+ .|.|.|||..+. ...+++..+..-...|+++.|+++...|
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 99999999998875332 336788889999999999 889999997653 3346777777778899999999999988
Q ss_pred EEEEc--CCeEEEEECCCCeEEE-Ec---cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 789 LVIGC--YETLELWNMTENKTLT-LS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 789 ~sgs~--dg~I~Iwdl~~~~~~~-~~---~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+.++. +..+++..+.+..+.. +. ..-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 88776 4589999988877662 22 3345799999999999999999999999995
No 107
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=2.1e-22 Score=233.02 Aligned_cols=229 Identities=17% Similarity=0.223 Sum_probs=176.6
Q ss_pred EEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEecCCCe--------EEEEeccCCCCeEEEEEcCCCCE-EEEEe
Q 003177 552 EFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSR-LATSS 621 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpd-g~~Lasgs~Dg~I~vwd~~t~~--------~~~~l~~h~~~I~~l~fspdg~~-Latgs 621 (842)
.+..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++. .+..+.+|...|.+|+|+|++.. |++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 56788999999999999996 7899999999999999997542 34567889999999999998876 57899
Q ss_pred CCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCC-ee-----EEEE
Q 003177 622 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-AT-----QMRF 695 (842)
Q Consensus 622 ~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-i~-----~v~~ 695 (842)
.|++|+|||+.++.. +..+. |...|.+++|+|+|. +|++++.|+.|+|||+++++.+..+..+.. +. ...|
T Consensus 146 ~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~f 222 (568)
T PTZ00420 146 FDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGL 222 (568)
T ss_pred CCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeE
Confidence 999999999998764 44444 567899999999987 666788899999999999999888775443 22 2234
Q ss_pred eCCCCEEEEEEcCC----eEEEEECCC-CeEEEEEeC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE
Q 003177 696 QPRLGRILAAAIEN----YISILDVET-QVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 767 (842)
Q Consensus 696 sp~g~~l~~~s~dg----~I~IwDl~t-~~~~~~l~~--h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~ 767 (842)
+++++++++++.++ .|+|||+++ ..++..+.. +.+.+......+++.++++|+ |+.|++|++..+. ...+.
T Consensus 223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~ 301 (568)
T PTZ00420 223 GGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVN 301 (568)
T ss_pred cCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeec
Confidence 58889999988774 799999995 455554432 333333344445688888887 9999999998752 22333
Q ss_pred EeecCCCceEEEEEeCCC
Q 003177 768 ELSCTGNKFHSCVFHPTF 785 (842)
Q Consensus 768 ~~~~~~~~I~sv~~spdg 785 (842)
.+. +..++..++|.|+.
T Consensus 302 ~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 302 EYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred ccc-cCCCccceEEcccc
Confidence 333 45778889999974
No 108
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=3.8e-23 Score=207.38 Aligned_cols=234 Identities=19% Similarity=0.291 Sum_probs=212.3
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 003177 597 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 676 (842)
Q Consensus 597 ~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~ 676 (842)
.+.+|+.+++-|.|+.+|.+|++|+.|.++.||-..+++ .+-++.+|.+.|+|++.+.+.+ .+++|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-rlGty~GHtGavW~~Did~~s~-~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-RLGTYDGHTGAVWCCDIDWDSK-HLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-eeeeecCCCceEEEEEecCCcc-eeeeccccceeEEEEcC
Confidence 357899999999999999999999999999999887765 4899999999999999998866 55699999999999999
Q ss_pred CCceeeEEeecCCeeEEEEeCCCCEEEEEEcC-----CeEEEEECC-------CCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 003177 677 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-----NYISILDVE-------TQVCRLKLQGHKNQVHSVCWNTSGEYL 744 (842)
Q Consensus 677 t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~d-----g~I~IwDl~-------t~~~~~~l~~h~~~V~sl~~spdg~~L 744 (842)
+|+++..++....|..+.|++++++++++..+ +.|.++|++ ..++...+..+.+.++.+.|.|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 99999999999999999999999988887763 579999998 456788888889999999999999999
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEe
Q 003177 745 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 823 (842)
Q Consensus 745 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~s 823 (842)
++|. ||.|.+||++++. +.+.....|...|+.+.++++..++++++.|.+-++||+.+-.+++....+.+|++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 9999 9999999999974 566667788899999999999999999999999999999999999888899999999999
Q ss_pred CCCCEEEEEeC
Q 003177 824 TVNGMVASASH 834 (842)
Q Consensus 824 pdg~~Lasgs~ 834 (842)
|-...++.|+.
T Consensus 241 P~~d~VilgGG 251 (327)
T KOG0643|consen 241 PLLDHVILGGG 251 (327)
T ss_pred cccceEEecCC
Confidence 98887777653
No 109
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=4.5e-23 Score=229.31 Aligned_cols=261 Identities=18% Similarity=0.303 Sum_probs=224.3
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE-EEEcC-CCCEEEEEECCCcEEEEe
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES-CHFSP-DGKLLATGGHDKKAVLWC 588 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~s-v~fSp-dg~~Lasgs~Dg~I~vwd 588 (842)
+..+.++|.|+++++|.-.+ ..+.+...+.+|.+-|.+ ++|-+ ++-.|++|+.|++|.+|.
T Consensus 25 ~~~i~s~sRd~t~~vw~~~~-----------------~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~ 87 (745)
T KOG0301|consen 25 GVCIISGSRDGTVKVWAKKG-----------------KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK 87 (745)
T ss_pred CeEEeecCCCCceeeeeccC-----------------cccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence 34688899999999994433 334455677888888888 88875 555799999999999999
Q ss_pred cCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCC
Q 003177 589 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 668 (842)
Q Consensus 589 ~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 668 (842)
.....+..++.+|...|+|+....++. +++||.|.+++||.... +...+.+|...|+++.+-|++ .+++|+.|.
T Consensus 88 ~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vTgsaDK 161 (745)
T KOG0301|consen 88 LSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVTGSADK 161 (745)
T ss_pred cCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEeccCcc
Confidence 999999999999999999999888877 99999999999998764 345689999999999999986 566999999
Q ss_pred cEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003177 669 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 747 (842)
Q Consensus 669 ~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasg 747 (842)
+|++|.- ++++++|.. .+-|..+++-++ ..|++++.||.|++|++ +++++..+.+|.+.|.++....++..++++
T Consensus 162 tIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~ 237 (745)
T KOG0301|consen 162 TIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVST 237 (745)
T ss_pred eeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEe
Confidence 9999986 677777775 455888999886 56889999999999999 789999999999999999977778888888
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 748 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 748 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
+ |++++||+.. +|...+......|+++.+-++|. |++|++||.|+||....
T Consensus 238 gEDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 238 GEDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred cCCceEEEeecC-----ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 7 9999999875 67777777777999999999987 99999999999998764
No 110
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=3.9e-24 Score=222.14 Aligned_cols=266 Identities=16% Similarity=0.240 Sum_probs=225.0
Q ss_pred eEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCC
Q 003177 513 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 592 (842)
Q Consensus 513 ~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~ 592 (842)
.+++|+.||.|++|+.... .++.++.+|.+.|..|+++. ..+++++.|++|+.|.++.
T Consensus 81 ~~aSGs~DG~VkiWnlsqR-------------------~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~- 138 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQR-------------------ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG- 138 (433)
T ss_pred hhhccccCceEEEEehhhh-------------------hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-
Confidence 4689999999999966443 34678899999999999986 6788999999999998775
Q ss_pred eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEE
Q 003177 593 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 672 (842)
Q Consensus 593 ~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~v 672 (842)
..+.++.+ ...+..|.-+..+..++||+.+ |.|||.... .++..+.-....|.++.|+|....+|++|+.|+.|.+
T Consensus 139 ~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~-~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvL 214 (433)
T KOG0268|consen 139 PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRD-NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVL 214 (433)
T ss_pred Ccceeeec-cccccccccccccccccccCce--eeecccccC-CccceeecCCCceeEEecCCCcchheeeeccCCceEE
Confidence 46666643 3557778777778889998765 999999764 4577777777889999999999999999999999999
Q ss_pred EECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC
Q 003177 673 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE 750 (842)
Q Consensus 673 wDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg 750 (842)
||++.+.++..+......+.++|+|..-.|+++.+|..++.||++.- .++....+|.+.|.++.|+|.|.-+++|+ |.
T Consensus 215 yD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 215 YDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred EecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence 99999999999988889999999997777888999999999999975 67788889999999999999999999999 99
Q ss_pred eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003177 751 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 806 (842)
Q Consensus 751 ~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~ 806 (842)
+|+||.++.+......++- .-..|.++.|+-|..+|++|+.|+.|++|.....+
T Consensus 295 sIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 295 SIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred eEEEeecCCCcchhhhhHh--hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 9999999877432222221 12468999999999999999999999999876544
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.5e-23 Score=207.91 Aligned_cols=248 Identities=21% Similarity=0.289 Sum_probs=204.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCC---eEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 003177 556 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 630 (842)
Q Consensus 556 l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~---~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWD 630 (842)
-..|.+.|..+...--|++|||++.|++|+||.+.+. ..+.++.+|.++|..++|.. -|.+||++++||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3579999999988888999999999999999998753 56789999999999999976 699999999999999999
Q ss_pred cCCCCc-eeeEeecCccceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCC-c-ee--eEEeecCCeeEEEEeCC---C--
Q 003177 631 TENPDY-SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG-S-CA--GVFKCQSGATQMRFQPR---L-- 699 (842)
Q Consensus 631 l~t~~~-~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~-~-~i--~~~~~~~~i~~v~~sp~---g-- 699 (842)
-.++.. ....+..|...|++++|.|.+ ..+|++++.||.|.|.+.+.. . .. ..+.+.-++++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 987753 234567899999999999975 456778889999999998764 1 11 22235677999999985 4
Q ss_pred ---------CEEEEEEcCCeEEEEECCCC--eEEEEEeCCCCCEEEEEEcCCC----CEEEEEe-CCeEEEEEcCCCCCc
Q 003177 700 ---------GRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGSGSKG 763 (842)
Q Consensus 700 ---------~~l~~~s~dg~I~IwDl~t~--~~~~~l~~h~~~V~sl~~spdg----~~Lasgs-Dg~I~IwDl~s~~~~ 763 (842)
+.|++|+.|+.|+||+..++ +...++.+|.+.|+.++|.|.- .+|++++ ||+|.||..+.....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 56999999999999999876 3344588999999999999964 5789999 999999998743232
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 764 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 764 ~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
-....++.....+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 3333444566789999999999999999999999999754
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=1.3e-22 Score=215.14 Aligned_cols=270 Identities=17% Similarity=0.205 Sum_probs=228.6
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 591 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t 591 (842)
.++.+|+.|.++-+|+-... ..+.+++||...|+.+.|+++...+++++.|..|+||....
T Consensus 232 ~~ilTGG~d~~av~~d~~s~-------------------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~ 292 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSN-------------------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL 292 (506)
T ss_pred CcceecCCCCceEEEecchh-------------------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence 67789999988888844332 23678899999999999999999999999999999999988
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEee-cCccceEEEEEcCCCCcEEEEEeCCCcE
Q 003177 592 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEI 670 (842)
Q Consensus 592 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I 670 (842)
......+..|.++|+.+..+|.|.||++++.||+..+.|+.++........ ...-.+++++|+|||- +|.+|..|+.|
T Consensus 293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~v 371 (506)
T KOG0289|consen 293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVV 371 (506)
T ss_pred ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceE
Confidence 888888889999999999999999999999999999999998765332222 1234589999999975 88899999999
Q ss_pred EEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEe
Q 003177 671 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS 748 (842)
Q Consensus 671 ~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h-~~~V~sl~~spdg~~Lasgs 748 (842)
+|||+.+...+..|.. .++|..+.|+.+|-++++++.|+.|++||++..+...++... ...|.+++|+..|.+|+.++
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 9999999888888875 567999999999999999999999999999988877776542 34799999999999999986
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 749 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 802 (842)
Q Consensus 749 -Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl 802 (842)
|=.|++++-.+. ...++..+..|.+..+.+.|.....++++++.|..++++.+
T Consensus 452 ~~l~Vy~~~k~~k-~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 452 SDLQVYICKKKTK-SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEEEecccc-cceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 556777664442 34677778888888999999999999999999999888864
No 113
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=2.9e-22 Score=222.71 Aligned_cols=333 Identities=20% Similarity=0.270 Sum_probs=246.9
Q ss_pred cccCCCceEEeccCCCceEEeecCCCCCCC--cccccccccCCCeeee---EE-------EEecCCCCCeEEEEEcCCCC
Q 003177 506 QLTDMDRFVDDGSLDDNVESFLSPDDADPR--DRVGRSAEVGKGFTFT---EF-------QLIPASTSKVESCHFSPDGK 573 (842)
Q Consensus 506 ~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~--~~~~~~~~~~~g~~~~---~i-------~~l~gH~~~V~sv~fSpdg~ 573 (842)
.+...+.+++++|.|..|++|......+.. .+....-...+...+. ++ ..+.||.+.|+++.|+|.+.
T Consensus 201 ~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~ 280 (764)
T KOG1063|consen 201 RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL 280 (764)
T ss_pred ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh
Confidence 334467899999999999999333222111 1100000011111111 11 34559999999999999999
Q ss_pred EEEEEECCCcEEEEecCCC--eEE-----EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeeEeecC
Q 003177 574 LLATGGHDKKAVLWCTESF--TVK-----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGH 644 (842)
Q Consensus 574 ~Lasgs~Dg~I~vwd~~t~--~~~-----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~--~i~~~~~h 644 (842)
.|++++.|+++.+|...+. --+ ..+.+.........|+|+++.+++-+..|..++|....... ....+.||
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH 360 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH 360 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc
Confidence 9999999999999976543 222 22233455688999999999999999999999999433222 23456799
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc-----eeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC-
Q 003177 645 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET- 718 (842)
Q Consensus 645 ~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-----~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t- 718 (842)
...|.+++|+|.|+++| +.+.|-+-|+|-.-..+ ..+.-.|...++|+++-+..-.|++|+.+..+++|+...
T Consensus 361 ~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~ 439 (764)
T KOG1063|consen 361 VDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKS 439 (764)
T ss_pred cccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHH
Confidence 99999999999998555 88889999998665111 111112345688999888656677777778888885421
Q ss_pred ------------------------------------------CeE---------------------------------EE
Q 003177 719 ------------------------------------------QVC---------------------------------RL 723 (842)
Q Consensus 719 ------------------------------------------~~~---------------------------------~~ 723 (842)
+.. +.
T Consensus 440 fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~ 519 (764)
T KOG1063|consen 440 FVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVH 519 (764)
T ss_pred HHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhH
Confidence 000 12
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003177 724 KLQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 797 (842)
Q Consensus 724 ~l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I 797 (842)
++.+|...|.+++.+|++++++++. . ..|++|+..+- ..+..+..|.-.|+.++|+||+++|++++.|.++
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~ 596 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTV 596 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEEEEEECCCCcEEEEeecCceE
Confidence 2347888999999999999999987 2 27999999877 5666888999999999999999999999999999
Q ss_pred EEEECCCCeEE-----EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 798 ELWNMTENKTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 798 ~Iwdl~~~~~~-----~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.+|........ ....|..-|+++.|+|++.+++|+|.|.+|+||.
T Consensus 597 sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 597 SLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 99998654433 3678999999999999999999999999999994
No 114
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=1.4e-22 Score=224.45 Aligned_cols=246 Identities=21% Similarity=0.341 Sum_probs=213.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEEcC
Q 003177 556 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTE 632 (842)
Q Consensus 556 l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fsp---dg~~Latgs~Dg~I~IWDl~ 632 (842)
..+....|.|+++||+|.+||+|..-|+++||++.+.+....++.|+..|.|+.|+. ..++||+++.|..|.|||+.
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 344566799999999999999999999999999999999999999999999999986 36789999999999999998
Q ss_pred CCCceeeEeecCccceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCceeeEEe------ecCCeeEEEEeCCCCEEEEE
Q 003177 633 NPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLGRILAA 705 (842)
Q Consensus 633 t~~~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~i~~~~------~~~~i~~v~~sp~g~~l~~~ 705 (842)
..-..+.++.+|...|+++.|.-.| +.-+++|+.|+.|.+--.........|. .+..+..++..|..++++++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence 8777788999999999999998765 3456689989887654333221111111 13558899999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEEeC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003177 706 AIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 781 (842)
Q Consensus 706 s~dg~I~IwDl~t~~~~~~l~~---h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~ 781 (842)
+.|..|+|||+.+++.++.|++ |.+....+..+|.|.||++.. |.++.++|+.++ +|+....+|...|+.+.|
T Consensus 615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF 691 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKF 691 (1080)
T ss_pred ecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeee
Confidence 9999999999999999999986 667788899999999999977 999999999998 899999999999999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCC
Q 003177 782 HPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 782 spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
.+|.++|++.+.||.|.||.+..
T Consensus 692 ~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 692 LNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cccchhheeecCCceEEEEECch
Confidence 99999999999999999999864
No 115
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.2e-22 Score=222.28 Aligned_cols=290 Identities=17% Similarity=0.224 Sum_probs=232.3
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCE--EEEEeCCC
Q 003177 547 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR--LATSSADR 624 (842)
Q Consensus 547 g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~--Latgs~Dg 624 (842)
.++..+...++||++.|.||...|.|.+||+|+.||+|+||.+.++++++++. ..+.|.||+|+|.+.. ||++- +.
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~ 464 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GE 464 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cC
Confidence 45556677889999999999999999999999999999999999999999885 4568999999997543 44433 33
Q ss_pred eEEEEEcCC------------------------------------CCceeeEeecCccceEEEEEcCCCCcEEEEEeC--
Q 003177 625 TVRVWDTEN------------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-- 666 (842)
Q Consensus 625 ~I~IWDl~t------------------------------------~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~-- 666 (842)
.+.|.+..- ...-++....|...|..+.|+..|+++..++..
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 344433210 111133445688899999999999976655543
Q ss_pred CCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEE
Q 003177 667 NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 745 (842)
Q Consensus 667 Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~La 745 (842)
...|.|+++...+...-|. ..+.+.++.|+|...++++++ ...|+|||+...+.+..+......|.+++.+|.|..|+
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence 3578999998777666663 457799999999988777765 47899999998887777777778899999999999999
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC-------CCeEE---EEccCC
Q 003177 746 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT-------ENKTL---TLSAHD 814 (842)
Q Consensus 746 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~-------~~~~~---~~~~h~ 814 (842)
.++ |+.+..||+.-.. +....+..|...+++++||+..+.+++++.|+++.||.-. +..++ .+.+|.
T Consensus 624 ~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred EecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 999 9999999998664 5777888899999999999999999999999998888531 22222 566786
Q ss_pred CC----eeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 815 KL----VSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 815 ~~----V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
.. |.++.|+|.-.+|++++.||+|++|
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEee
Confidence 55 8899999999999999999999999
No 116
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.4e-21 Score=198.40 Aligned_cols=270 Identities=17% Similarity=0.283 Sum_probs=216.9
Q ss_pred cccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEEC--CCc
Q 003177 506 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH--DKK 583 (842)
Q Consensus 506 ~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~--Dg~ 583 (842)
.+.+...++.+.+.|+.+++|+..+. ..+.++..++-.|..++|......++.++. |.+
T Consensus 21 ~fs~~G~~litss~dDsl~LYd~~~g-------------------~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 21 DFSDDGLLLITSSEDDSLRLYDSLSG-------------------KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred EecCCCCEEEEecCCCeEEEEEcCCC-------------------ceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence 34455577888888899999977654 235666777778999999887777776666 889
Q ss_pred EEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEE
Q 003177 584 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 663 (842)
Q Consensus 584 I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llas 663 (842)
|+..++.+.+.++.|.+|...|++|+.+|-+..+++++.|++|++||++..++ ...+. ...-..++|.|.|- ++|+
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-qg~l~--~~~~pi~AfDp~GL-ifA~ 157 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-QGLLN--LSGRPIAAFDPEGL-IFAL 157 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC-ceEEe--cCCCcceeECCCCc-EEEE
Confidence 99999999999999999999999999999999999999999999999997554 22222 23344688999975 6666
Q ss_pred EeCCCcEEEEECCCC--ceeeEEee----cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCE---EE
Q 003177 664 CDNNSEIRYWSINNG--SCAGVFKC----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV---HS 734 (842)
Q Consensus 664 gs~Dg~I~vwDl~t~--~~i~~~~~----~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V---~s 734 (842)
+.....|++||++.- .+..++.. ..+.+.+.|+|+|+.++.++..+.+++.|.-+|....++..+...- ..
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 666669999999864 34444443 4568999999999999999999999999999999888888765533 57
Q ss_pred EEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 735 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 735 l~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
.+|+||++++++|+ ||+|.+|+++++ ..+..+.+ +..++.++.|.|....+++ .+..+.+|=..
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg---~~v~~~~~~~~~~~~~~~fnP~~~mf~s--a~s~l~fw~p~ 303 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETG---KKVAVLRGPNGGPVSCVRFNPRYAMFVS--ASSNLVFWLPD 303 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCC---cEeeEecCCCCCCccccccCCceeeeee--cCceEEEEecc
Confidence 88999999999999 899999999988 67777776 6889999999999655544 44567777554
No 117
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=3.5e-22 Score=213.92 Aligned_cols=253 Identities=19% Similarity=0.333 Sum_probs=205.5
Q ss_pred EEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEecCCCe----------EEEEeccCCCCeEEEEEcCC-CCEEEE
Q 003177 552 EFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT----------VKSTLEEHTQWITDVRFSPS-LSRLAT 619 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpd-g~~Lasgs~Dg~I~vwd~~t~~----------~~~~l~~h~~~I~~l~fspd-g~~Lat 619 (842)
++...-.|.+.|+.+.+-|. ..+||+.+..+.|+|||..+.. +-.++.+|...-++|+|++. .-.|++
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence 34444579999999999995 4577888889999999976422 22377899988889999985 557999
Q ss_pred EeCCCeEEEEEcCCCCc------eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC--CceeeEEe-ecCCe
Q 003177 620 SSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFK-CQSGA 690 (842)
Q Consensus 620 gs~Dg~I~IWDl~t~~~------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t--~~~i~~~~-~~~~i 690 (842)
++.|++|++||+..... +...+.+|...|..++|++....+|++++.|+.+.|||+++ .++..... +..++
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 99999999999975432 35678899999999999999999999999999999999994 44444443 46789
Q ss_pred eEEEEeCCCCE-EEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCC-----
Q 003177 691 TQMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGS----- 761 (842)
Q Consensus 691 ~~v~~sp~g~~-l~~~s~dg~I~IwDl~t~-~~~~~l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~----- 761 (842)
.|++|+|-+.+ |++++.|++|.+||+++- .++.++.+|...|.+|.|+|+.. .|++++ |+.+.|||+..-.
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 99999996655 566777999999999975 67889999999999999999765 555555 9999999997532
Q ss_pred ------CceeEEEeecCCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCC
Q 003177 762 ------KGECIHELSCTGNKFHSCVFHPTFPSL-LVIGCYETLELWNMTE 804 (842)
Q Consensus 762 ------~~~~i~~~~~~~~~I~sv~~spdg~~L-~sgs~dg~I~Iwdl~~ 804 (842)
..+.+....+|...|..+.|+|..+++ ++++.|+.+.||.+..
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 234567778899999999999999874 5567788999999764
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.1e-23 Score=231.19 Aligned_cols=275 Identities=19% Similarity=0.362 Sum_probs=217.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEecCCC----eEEEEecc---CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC
Q 003177 562 KVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEE---HTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN 633 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~----~~~~~l~~---h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~t 633 (842)
.+.+|...++-..|++++. ..+.||.+... ++...++. -...+.+|+|.. +.++|||++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3556677788777887775 46777765532 22222211 112355678875 478999999999999999986
Q ss_pred --CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec-CCeeEEEEeCC-CCEEEEEEcCC
Q 003177 634 --PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPR-LGRILAAAIEN 709 (842)
Q Consensus 634 --~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~~v~~sp~-g~~l~~~s~dg 709 (842)
....+..|..|...|.+++|++...++|++|+.||+|++||++..+...++... ..|..|.|+|. +..|+++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 233456788999999999999999999999999999999999998888877764 45999999995 45677777789
Q ss_pred eEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003177 710 YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 787 (842)
Q Consensus 710 ~I~IwDl~t~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~ 787 (842)
.+.+||++.. .+...+..|.++|.|+.|+|++.+||+|+ |+.|+|||..+... ..++++. ...++.++.|-|...+
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSY 277 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccc
Confidence 9999999975 67788899999999999999999999999 99999999987543 3444443 3678999999999877
Q ss_pred EEEEEc---CCeEEEEECCCCeEE--EEccCCCCeeEEEEeC-CCCEEEEEeCCCcEE
Q 003177 788 LLVIGC---YETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVK 839 (842)
Q Consensus 788 L~sgs~---dg~I~Iwdl~~~~~~--~~~~h~~~V~sla~sp-dg~~Lasgs~DG~V~ 839 (842)
.++.+. |-.|+|||++..-+- ++..|...++.++|.. |...|.+++.||+|.
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 555443 558999999876543 7889999999999965 445888999999874
No 119
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.9e-22 Score=216.05 Aligned_cols=229 Identities=23% Similarity=0.286 Sum_probs=201.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-----
Q 003177 559 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN----- 633 (842)
Q Consensus 559 H~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t----- 633 (842)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+.|+.+|+||+.||.|.+|.+..
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 356799999999999999998999999999999999999999999999999999999999999999999998742
Q ss_pred ---CCceeeEeecCccceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCC
Q 003177 634 ---PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 709 (842)
Q Consensus 634 ---~~~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg 709 (842)
...++..+..|+-+|+++...+.+ +..+++++.|.++++||+..+..+.++..+..+.+++.+|.+..+++|+.+|
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcc
Confidence 234678899999999999987653 4467799999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCC----------------eEEEEEeCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee
Q 003177 710 YISILDVETQ----------------VCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 770 (842)
Q Consensus 710 ~I~IwDl~t~----------------~~~~~l~~h~~--~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~ 770 (842)
.|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+ ||.|+|||+.+. .+++++.
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~---Q~iRtl~ 316 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK---QCIRTLQ 316 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH---HHHHHHh
Confidence 9999876532 34556778888 999999999999999999 999999999887 7888777
Q ss_pred cCCCceEEEEEeCCCCEEEE
Q 003177 771 CTGNKFHSCVFHPTFPSLLV 790 (842)
Q Consensus 771 ~~~~~I~sv~~spdg~~L~s 790 (842)
...++|+.+.+.|-.+.++.
T Consensus 317 ~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 317 TSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hhccccceeEeeccccceec
Confidence 67889999998766544444
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1.1e-20 Score=203.37 Aligned_cols=293 Identities=18% Similarity=0.294 Sum_probs=232.5
Q ss_pred cccCCCeeeeEEEEecCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE
Q 003177 542 AEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 620 (842)
Q Consensus 542 ~~~~~g~~~~~i~~l~gH~-~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg 620 (842)
|....+.-++....++.+. .-|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++...+|.+|- |
T Consensus 227 w~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-G 304 (626)
T KOG2106|consen 227 WTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-G 304 (626)
T ss_pred EEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-c
Confidence 4444444555555665543 5699999999985 56899999999999988888877779999999999999987555 9
Q ss_pred eCCCeEEEEEcCCCC------------------------------c---------eeeEeecCccceEEEEEcCCCCcEE
Q 003177 621 SADRTVRVWDTENPD------------------------------Y---------SLRTFTGHSTTVMSLDFHPSKEDLL 661 (842)
Q Consensus 621 s~Dg~I~IWDl~t~~------------------------------~---------~i~~~~~h~~~V~sl~fspdg~~ll 661 (842)
+.|..|..||-+-.+ . ......+|....+.++.+|+.+ .+
T Consensus 305 gKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~ 383 (626)
T KOG2106|consen 305 GKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QL 383 (626)
T ss_pred CccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-he
Confidence 999999999832100 0 0112346888889999999966 66
Q ss_pred EEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC
Q 003177 662 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 741 (842)
Q Consensus 662 asgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg 741 (842)
++|+.|+.+++|+ ..+.+.......++.|+.|+|.+ .+++|+..|...+.|.++...+..-.. ..+++++.|+|+|
T Consensus 384 ~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G 459 (626)
T KOG2106|consen 384 LTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDG 459 (626)
T ss_pred eeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCC
Confidence 6999999999999 66777777788999999999998 999999999999999999766655554 8899999999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------------
Q 003177 742 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-------------- 806 (842)
Q Consensus 742 ~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~-------------- 806 (842)
.+||.++ |+.|+||.+..... .....-.++..+|+.+.|++|+.+|.+-+.|-.|..|.....+
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~ 538 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYT 538 (626)
T ss_pred CEEEEecCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeE
Confidence 9999999 99999999986643 2233334455899999999999998888888788888432110
Q ss_pred --------------------------------------------------EEEEccCCCCeeEEEEeCCCCEEEEEeCCC
Q 003177 807 --------------------------------------------------TLTLSAHDKLVSSLAASTVNGMVASASHDK 836 (842)
Q Consensus 807 --------------------------------------------------~~~~~~h~~~V~sla~spdg~~Lasgs~DG 836 (842)
...+.+|.+.|++++|.-+...|++.+.|.
T Consensus 539 c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~ 618 (626)
T KOG2106|consen 539 CTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDT 618 (626)
T ss_pred EEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCc
Confidence 002345778899999998888888888999
Q ss_pred cEEEcC
Q 003177 837 CVKIWK 842 (842)
Q Consensus 837 ~V~IWd 842 (842)
.|..|+
T Consensus 619 Si~qW~ 624 (626)
T KOG2106|consen 619 SIMQWR 624 (626)
T ss_pred eEEEEE
Confidence 999996
No 121
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.3e-21 Score=198.51 Aligned_cols=283 Identities=20% Similarity=0.329 Sum_probs=220.5
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEecCCCe----------EEEE-----eccCCCCeEEEEEcC-CCCEE
Q 003177 555 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT----------VKST-----LEEHTQWITDVRFSP-SLSRL 617 (842)
Q Consensus 555 ~l~gH~~~V~sv~fSp-dg~~Lasgs~Dg~I~vwd~~t~~----------~~~~-----l~~h~~~I~~l~fsp-dg~~L 617 (842)
..+.|.+.|.++.+.+ .|+|+++|+.||.|.|||++... .+.. -.+|...|.++.|.| |.-.+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3467999999999988 78999999999999999987532 1111 136888999999999 66788
Q ss_pred EEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEE
Q 003177 618 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 694 (842)
Q Consensus 618 atgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~ 694 (842)
.+++.|.+++|||..+-.. ...|. ..+.|++-+++|- ...++++|..|-.|++.|+.+|.+...+.. ..+|.++.
T Consensus 118 tssSFDhtlKVWDtnTlQ~-a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQE-AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccccee-eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 8999999999999998653 33333 5577888888875 356888899999999999999999999875 56799999
Q ss_pred EeCCCCEE-EEEEcCCeEEEEECCCC-eEEEEE--------------eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003177 695 FQPRLGRI-LAAAIENYISILDVETQ-VCRLKL--------------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 757 (842)
Q Consensus 695 ~sp~g~~l-~~~s~dg~I~IwDl~t~-~~~~~l--------------~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl 757 (842)
|+|...++ ++|+.||.|++||++.. -+...+ ..|.+.|.+++|+.++.++++++ |..+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 99988875 56778999999999864 333332 24778899999999999999988 999999999
Q ss_pred CCCCCceeEEEeecCC----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEE
Q 003177 758 GSGSKGECIHELSCTG----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 832 (842)
Q Consensus 758 ~s~~~~~~i~~~~~~~----~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasg 832 (842)
.++.....-.....+. ..+. +. +-+...++..-.++.+.++++-++..+ .+..|...|.|.++-|+-..+.++
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 8875422111111111 1111 22 334444555556689999999988877 677898899999999998999999
Q ss_pred eCCCcEEEc
Q 003177 833 SHDKCVKIW 841 (842)
Q Consensus 833 s~DG~V~IW 841 (842)
+.|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999888
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.4e-22 Score=201.08 Aligned_cols=243 Identities=23% Similarity=0.396 Sum_probs=200.8
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--ceeeEeecCccceEEEEEc-CCCCcEEEEEeCCCcEEEEEC
Q 003177 599 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSI 675 (842)
Q Consensus 599 ~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~--~~i~~~~~h~~~V~sl~fs-pdg~~llasgs~Dg~I~vwDl 675 (842)
..|.+.|.++...--|++|+||+.|++|+|+.+++.. ..+.++.+|.++|+.++|. |.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4688999998888889999999999999999998765 5678999999999999995 555669999999999999999
Q ss_pred CCCceeeEEe---ecCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCC---eEEEEEeCCCCCEEEEEEcCC---C---
Q 003177 676 NNGSCAGVFK---CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTS---G--- 741 (842)
Q Consensus 676 ~t~~~i~~~~---~~~~i~~v~~sp~--g~~l~~~s~dg~I~IwDl~t~---~~~~~l~~h~~~V~sl~~spd---g--- 741 (842)
.+++-..... +...+++++|.|. |-.|++++.||.|.|++.+.. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 9885443333 4567999999885 456889999999999988754 333445679999999999985 4
Q ss_pred --------CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCC---
Q 003177 742 --------EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTEN--- 805 (842)
Q Consensus 742 --------~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg----~~L~sgs~dg~I~Iwdl~~~--- 805 (842)
+.|++|+ |..|+||+..++ ....-..+..|..-|+.++|.|.- .+|++++.||+|.||.....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 4588888 999999999886 334445588999999999999975 57999999999999987632
Q ss_pred -eEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 806 -KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 806 -~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+...+......+..++|+..|.+|+.++.|+.|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1223445677899999999999999999999999995
No 123
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=5.7e-22 Score=212.29 Aligned_cols=242 Identities=20% Similarity=0.320 Sum_probs=197.7
Q ss_pred ccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc---------eeeEeecCccceEEEEEcCCCCcEEEEEeCCC
Q 003177 599 EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 668 (842)
Q Consensus 599 ~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~t~~~---------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 668 (842)
-.|.+.|+.+++.|. ..+|++.+..+.|+|||..+-.. +-..+.+|...-++++|++.....+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 369999999999995 55677788899999999875322 12277889988889999999888899999999
Q ss_pred cEEEEECCCCce-------eeEEe-ecCCeeEEEEeCCC-CEEEEEEcCCeEEEEECC--CCeEEEEEeCCCCCEEEEEE
Q 003177 669 EIRYWSINNGSC-------AGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVE--TQVCRLKLQGHKNQVHSVCW 737 (842)
Q Consensus 669 ~I~vwDl~t~~~-------i~~~~-~~~~i~~v~~sp~g-~~l~~~s~dg~I~IwDl~--t~~~~~~l~~h~~~V~sl~~ 737 (842)
.|++||+..... ...+. +...|..++|++.. ..|.+++.|+.+.|||++ +.++.....+|.+.|.|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 999999975432 22232 35568999999954 456678888999999999 56777788899999999999
Q ss_pred cCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCC-e-------
Q 003177 738 NTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTEN-K------- 806 (842)
Q Consensus 738 spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg-~~L~sgs~dg~I~Iwdl~~~-~------- 806 (842)
+|- +.+||+++ |++|++||+|+.. .+++.+.+|...|..+.|+|.. ..|++++.|+.+.|||+..- +
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 995 45677777 9999999999875 5899999999999999999986 45677788999999998531 1
Q ss_pred ------E-EEEccCCCCeeEEEEeCCCC-EEEEEeCCCcEEEcC
Q 003177 807 ------T-LTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 842 (842)
Q Consensus 807 ------~-~~~~~h~~~V~sla~spdg~-~Lasgs~DG~V~IWd 842 (842)
+ ..-.+|...|..+.|+|... .|+++++|+.+.||+
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 1 24458999999999999886 677889999999995
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.7e-21 Score=221.21 Aligned_cols=277 Identities=14% Similarity=0.223 Sum_probs=220.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 003177 557 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 635 (842)
Q Consensus 557 ~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~-~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~ 635 (842)
.+|+...+.|+|.++|++|++++.||.|++|+.... +...++..+...|.+++.. +.+|++|+.+++|.+|.+.++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 378999999999999999999999999999987665 4445555577888888774 5599999999999999998866
Q ss_pred ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEE
Q 003177 636 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISIL 714 (842)
Q Consensus 636 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~Iw 714 (842)
. -..+...+-++.+++|+-+|. +++.|++|-.|++.++........+. +..+|.++.|+|.+.+|++.+.||.|+||
T Consensus 88 ~-~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 E-DTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred c-cceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 4 345555678899999999877 66688999999999999887777776 46789999999999999999999999999
Q ss_pred ECCCCeEEEEEeCC--------CCCEEEEEEcCCCC-EEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003177 715 DVETQVCRLKLQGH--------KNQVHSVCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 785 (842)
Q Consensus 715 Dl~t~~~~~~l~~h--------~~~V~sl~~spdg~-~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg 785 (842)
|+.++.+..++.+- ...+..++|+|+|. +++.+.|+.|++|+..+......+. ...+...+..+.|+|+|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-DKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-ccccccceEEEEEcCCC
Confidence 99998877666531 34567789999955 4455559999999998874322222 22234459999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 786 PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 786 ~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
.||++++.+|.|.|||+++-.. ......|++++|.|+..-|-.-..-|...+|
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999999999988222 3345679999999998766555555544433
No 125
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=7.8e-22 Score=217.58 Aligned_cols=275 Identities=22% Similarity=0.320 Sum_probs=210.1
Q ss_pred EEEcC---CCCEEEEEECCCcEEEEecCCCeEE------EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003177 566 CHFSP---DGKLLATGGHDKKAVLWCTESFTVK------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 636 (842)
Q Consensus 566 v~fSp---dg~~Lasgs~Dg~I~vwd~~t~~~~------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~ 636 (842)
+.|++ ...+||.+.+||.|.++|....... .....|...|.++.|.|....|++++.|.++++||+...+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 66665 3457999999999999998754332 44567999999999999888999999999999999998654
Q ss_pred eee--EeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcee--------------------eEE--------ee
Q 003177 637 SLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--------------------GVF--------KC 686 (842)
Q Consensus 637 ~i~--~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i--------------------~~~--------~~ 686 (842)
+. .+.+|.+.|.++||.|.+..+|++|+.||.|.|||++....- ... ..
T Consensus 135 -~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 135 -VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred -ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 43 488999999999999999999999999999999999743200 000 00
Q ss_pred cCCeeE---EEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEE--------eCC---CCCEEEEEEcCCCCEEEEEe-CC
Q 003177 687 QSGATQ---MRFQPRLGRILAAAI-ENYISILDVETQVCRLKL--------QGH---KNQVHSVCWNTSGEYLASVS-DE 750 (842)
Q Consensus 687 ~~~i~~---v~~sp~g~~l~~~s~-dg~I~IwDl~t~~~~~~l--------~~h---~~~V~sl~~spdg~~Lasgs-Dg 750 (842)
...|.+ +.+..|...|++++. |+.|+|||+++....... .-| .-.++++..+..|.+|++.+ |+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 122444 556677788888777 999999999976543322 223 23577888888888877655 99
Q ss_pred eEEEEEcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEeCCC
Q 003177 751 LVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVN 826 (842)
Q Consensus 751 ~I~IwDl~s~~~~~~i~~~~~~~~--~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~--~~~~h~~~V~sla~spdg 826 (842)
.|++|++.+... ..+..+.++.. -...-..+|++.+|++|+.|...++|.+.+.+.- .+.+|.-.|++++|.|..
T Consensus 294 sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 294 SIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred cEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 999999987533 33333333322 2233467999999999999999999999887643 677999999999998843
Q ss_pred -CEEEEEeCCCcEEEcC
Q 003177 827 -GMVASASHDKCVKIWK 842 (842)
Q Consensus 827 -~~Lasgs~DG~V~IWd 842 (842)
.-+++|++|-+++||+
T Consensus 373 ~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWR 389 (720)
T ss_pred CCCceeeccCcceEEEe
Confidence 3577889999999996
No 126
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=8.8e-21 Score=193.93 Aligned_cols=257 Identities=20% Similarity=0.321 Sum_probs=198.8
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC----CCeEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 003177 557 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 630 (842)
Q Consensus 557 ~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~----t~~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWD 630 (842)
.+|.+-|.|+.|.+.|+.+|+|+.|++|+|||.+ +..+....+.|.+.|..|.|.+ -|..+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 5799999999999999999999999999999954 3456677889999999999976 389999999999999997
Q ss_pred cCCCC--------ceeeEeecCccceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCE
Q 003177 631 TENPD--------YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 701 (842)
Q Consensus 631 l~t~~--------~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~ 701 (842)
-.... ....++......|++|.|.|.. ...+++++.||.||||+.-..-.+.......++..+.. |
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~-p---- 164 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID-P---- 164 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC-C----
Confidence 62111 1234566778899999999963 34678999999999998765433333322222211111 1
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC---CCEEEEEeCC------eEEEEEcCCCC-CceeEEEeec
Q 003177 702 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS---GEYLASVSDE------LVRVWSIGSGS-KGECIHELSC 771 (842)
Q Consensus 702 l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spd---g~~LasgsDg------~I~IwDl~s~~-~~~~i~~~~~ 771 (842)
...+..+..|+.|+|. ..+|++|+|. .++||...... +...+.++..
T Consensus 165 -----------------------p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 165 -----------------------PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred -----------------------cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 1125556778888874 4578888865 89999887654 4566777889
Q ss_pred CCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCCe--------------------EE-EEccCCCCeeEEEEeCCC
Q 003177 772 TGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTENK--------------------TL-TLSAHDKLVSSLAASTVN 826 (842)
Q Consensus 772 ~~~~I~sv~~spdg----~~L~sgs~dg~I~Iwdl~~~~--------------------~~-~~~~h~~~V~sla~spdg 826 (842)
+..+|+.++|.|+- ..|++++.|| |+||.+.... .+ .+..|.+.|+.+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 99999999999963 4688999999 9999987311 11 466899999999999999
Q ss_pred CEEEEEeCCCcEEEcC
Q 003177 827 GMVASASHDKCVKIWK 842 (842)
Q Consensus 827 ~~Lasgs~DG~V~IWd 842 (842)
..|++.++||+|++|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999995
No 127
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=3.2e-21 Score=206.95 Aligned_cols=236 Identities=19% Similarity=0.341 Sum_probs=203.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 637 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~--~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~ 637 (842)
.+-|.+|.+.|||+.|++|++-.+|.|||+..... ...+....-.+.+++.+||.+..++++.||.|.|||+.+. ..
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TL 543 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-ee
Confidence 45699999999999999999999999999975433 3444444456788999999999999999999999999975 45
Q ss_pred eeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 638 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 717 (842)
Q Consensus 638 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~ 717 (842)
++.+.+|...+.||+++++|.. |.+|+-|.+|+.||+++++.+......+.|.++.++|.+.++++|-..+.+.|....
T Consensus 544 VrqfqGhtDGascIdis~dGtk-lWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTK-LWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCce-eecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence 8999999999999999999875 559999999999999999988888888899999999999999999999999998876
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003177 718 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 796 (842)
Q Consensus 718 t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~ 796 (842)
.. ..+.+.-|.+.|.++.|.+.|+++++.+ |+.+..|...-+ ..+...+ ....|.+|.++.|.++|++|+.|..
T Consensus 623 kp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkk 697 (705)
T KOG0639|consen 623 KP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKK 697 (705)
T ss_pred Cc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeecc-ccCcceeeeeccCceEEEecCCCcc
Confidence 54 3445556999999999999999999988 999999998777 3443333 3678999999999999999999988
Q ss_pred EEEEEC
Q 003177 797 LELWNM 802 (842)
Q Consensus 797 I~Iwdl 802 (842)
..||.+
T Consensus 698 ATVYeV 703 (705)
T KOG0639|consen 698 ATVYEV 703 (705)
T ss_pred eEEEEE
Confidence 888764
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5e-21 Score=219.07 Aligned_cols=241 Identities=16% Similarity=0.251 Sum_probs=201.6
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 003177 599 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 678 (842)
Q Consensus 599 ~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~ 678 (842)
..|+...+.|+|.|+|++|++++.||.|++|+.........++..+...|.+++...+ .|++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCC
Confidence 3688889999999999999999999999999987663333444447788888887643 6779999999999999887
Q ss_pred ceeeEE-eecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003177 679 SCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 756 (842)
Q Consensus 679 ~~i~~~-~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwD 756 (842)
+.-..+ +..-++.+++|+.+|.++++|+.|-.|++.++.+......+.+|.++|.++.|+|++++||+.+ ||.|+|||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 654322 2347899999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred cCCCCCceeEEEee----cC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE---EEccCCCCeeEEEEeCCCCE
Q 003177 757 IGSGSKGECIHELS----CT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGM 828 (842)
Q Consensus 757 l~s~~~~~~i~~~~----~~-~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~---~~~~h~~~V~sla~spdg~~ 828 (842)
+.++.....+..+. .. ...+..++|+|++..+++.+.|+.|++|+..+++.. ....+...++++.|+|+|.|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 99873322222111 11 344677899999999999999999999999998766 33345556999999999999
Q ss_pred EEEEeCCCcEEEcC
Q 003177 829 VASASHDKCVKIWK 842 (842)
Q Consensus 829 Lasgs~DG~V~IWd 842 (842)
||+++.||.|.|||
T Consensus 247 iAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 247 IAASTLDGQILVWN 260 (933)
T ss_pred EeeeccCCcEEEEe
Confidence 99999999999997
No 129
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.5e-21 Score=206.92 Aligned_cols=278 Identities=15% Similarity=0.219 Sum_probs=224.5
Q ss_pred cCCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC-EEEEEECC
Q 003177 503 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHD 581 (842)
Q Consensus 503 ~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~-~Lasgs~D 581 (842)
.+..+.+...++.++++|+++++|...... -..++.+.--..+|.+++|.|+|. .+++++..
T Consensus 217 ~sv~FHp~~plllvaG~d~~lrifqvDGk~-----------------N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr 279 (514)
T KOG2055|consen 217 TSVQFHPTAPLLLVAGLDGTLRIFQVDGKV-----------------NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR 279 (514)
T ss_pred eEEEecCCCceEEEecCCCcEEEEEecCcc-----------------ChhheeeeeccCccceeeecCCCceEEEecccc
Confidence 334444555788999999999999664331 124566666678899999999999 89999999
Q ss_pred CcEEEEecCCCeEE--EEeccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCC
Q 003177 582 KKAVLWCTESFTVK--STLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 658 (842)
Q Consensus 582 g~I~vwd~~t~~~~--~~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~ 658 (842)
..++.||+.+.+.. ..+.++. ..+.....++++++|+..+..|.|.|....++.. +..+. -.+.|..++|+.+++
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-i~s~K-ieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-ITSFK-IEGVVSDFTFSSDSK 357 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-hheee-eccEEeeEEEecCCc
Confidence 99999999887654 3334444 4577788899999999999999999999988664 44444 467899999999987
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeecCCe--eEEEEeCCCCEEEEEEcCCeEEEEECCC------CeEEEEEeCCCC
Q 003177 659 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKN 730 (842)
Q Consensus 659 ~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i--~~v~~sp~g~~l~~~s~dg~I~IwDl~t------~~~~~~l~~h~~ 730 (842)
.+++ ++.+|.|++||++...|++.+...+.+ ++++.++++.+|++|+..|.|.|||.++ .+++..+..-..
T Consensus 358 ~l~~-~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt 436 (514)
T KOG2055|consen 358 ELLA-SGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT 436 (514)
T ss_pred EEEE-EcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe
Confidence 6664 455889999999999999999887765 5677789999999999999999999653 466777777778
Q ss_pred CEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEeec---CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 731 QVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 731 ~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~---~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
.|+++.|++|..+|+.++ +..+++-.+.+. .....+.. .-+.|+|++|+|.+.++++|..+|.|.+|.+.
T Consensus 437 ~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~---TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 437 AITSLQFNHDAQILAIASRVKKNALRLVHVPSC---TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeeCcchhhhhhhhhccccceEEEeccce---eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999999999999999988 678999998876 33333333 34678999999999999999999999999874
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=7.5e-20 Score=197.06 Aligned_cols=294 Identities=14% Similarity=0.155 Sum_probs=226.5
Q ss_pred CCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEE---eccC-CCCeEEEE
Q 003177 534 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST---LEEH-TQWITDVR 609 (842)
Q Consensus 534 ~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~---l~~h-~~~I~~l~ 609 (842)
+.+.+..+|+|.++....++. .....|..+.|+|.+..|++....+.+.+|+.+.+...++ ++.+ ...|.|++
T Consensus 177 s~~h~lSVWdWqk~~~~~~vk---~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~ 253 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKLGPVK---TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVT 253 (626)
T ss_pred CCccccchhhchhhhccCcce---eccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEE
Confidence 344566778888777655554 4556799999999666555555568999999988766544 3332 36799999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc----------
Q 003177 610 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------- 679 (842)
Q Consensus 610 fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~---------- 679 (842)
|.++|. ++||..+|.|.||+..+... .+....|.+.|.+++...+|. ++ +|+.|..|..||-.-.+
T Consensus 254 F~engd-viTgDS~G~i~Iw~~~~~~~-~k~~~aH~ggv~~L~~lr~Gt-ll-SGgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 254 FLENGD-VITGDSGGNILIWSKGTNRI-SKQVHAHDGGVFSLCMLRDGT-LL-SGGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred EcCCCC-EEeecCCceEEEEeCCCceE-EeEeeecCCceEEEEEecCcc-Ee-ecCccceEEeccccccccccccCchhc
Confidence 999886 78999999999999987655 344448999999999998875 44 69999999999832111
Q ss_pred -eee------------------------------EEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 003177 680 -CAG------------------------------VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH 728 (842)
Q Consensus 680 -~i~------------------------------~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h 728 (842)
.++ .+.+......++.+|+...+++++.|+.+++|+ ..+++.+.. .
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~ 406 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-I 406 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-e
Confidence 000 111123456678899999999999999999999 445555443 4
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe-
Q 003177 729 KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK- 806 (842)
Q Consensus 729 ~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~- 806 (842)
..++.|+.|+|.| .++.|. .|...|.|.++. ..+..... ..+++++.|+|+|.+|++|+.|+.|+||.+..+.
T Consensus 407 ~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 407 EDPAECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred cCceeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 5788999999999 888888 999999999885 44444444 8899999999999999999999999999986543
Q ss_pred EE-E-EccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 807 TL-T-LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 807 ~~-~-~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.+ . -..|..+|+.+.|++|+++|.+-+.|-.|..|+
T Consensus 482 ~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 482 KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 33 2 223458999999999999999999999999884
No 131
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.6e-20 Score=190.98 Aligned_cols=254 Identities=15% Similarity=0.237 Sum_probs=201.0
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~ 590 (842)
...+..+++|+.++++..... +....-.|..+|.+|+|.+ ...+++|+.||.|+++|+.
T Consensus 25 ~~~LLvssWDgslrlYdv~~~--------------------~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 25 SSDLLVSSWDGSLRLYDVPAN--------------------SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred CCcEEEEeccCcEEEEeccch--------------------hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEec
Confidence 356777889999999965443 1222235889999999987 4578899999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcE
Q 003177 591 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 670 (842)
Q Consensus 591 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 670 (842)
++... .+..|...|.||.+++....+++||+|++|++||.+... ....+. ....|.++.... + .|+.|+.|..|
T Consensus 84 ~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~d-~~kkVy~~~v~g--~-~LvVg~~~r~v 157 (323)
T KOG1036|consen 84 TGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTFD-QGKKVYCMDVSG--N-RLVVGTSDRKV 157 (323)
T ss_pred CCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-cccccc-cCceEEEEeccC--C-EEEEeecCceE
Confidence 87654 566799999999999988899999999999999998632 233333 345899998873 3 56677889999
Q ss_pred EEEECCCCceeeEE---eecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC----eEEEEEeCCCC---------CEEE
Q 003177 671 RYWSINNGSCAGVF---KCQSGATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLKLQGHKN---------QVHS 734 (842)
Q Consensus 671 ~vwDl~t~~~i~~~---~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~----~~~~~l~~h~~---------~V~s 734 (842)
.+||+++....... ...-.+.|+++.|++.-+++++.||.|.+=.++.. .....|+.|.. +|++
T Consensus 158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNa 237 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNA 237 (323)
T ss_pred EEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEece
Confidence 99999986654422 23456899999999889999999999988666654 44555666643 7899
Q ss_pred EEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003177 735 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 794 (842)
Q Consensus 735 l~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d 794 (842)
|+|+|-...|++|+ ||.|.+||+.+. +.+..+......|.+++|+.+|..|+++++.
T Consensus 238 i~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 238 IAFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred eEeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 99999988899988 999999999887 5566666567789999999999999998863
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=7.4e-20 Score=207.31 Aligned_cols=276 Identities=19% Similarity=0.298 Sum_probs=221.7
Q ss_pred CCeEEEEEcCCC--CEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003177 561 SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 638 (842)
Q Consensus 561 ~~V~sv~fSpdg--~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i 638 (842)
+.|+++. +|.. +.|+.|+.+|.+.+|++.+++.+.++.++...|+++.=+|--..++.|..+|+|.|+++..++. +
T Consensus 160 ~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki-l 237 (910)
T KOG1539|consen 160 DFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI-L 237 (910)
T ss_pred CceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcE-E
Confidence 3377664 4543 3588999999999999999999999999999999999999888999999999999999998664 6
Q ss_pred eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe--ecCCeeEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 639 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDV 716 (842)
Q Consensus 639 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl 716 (842)
..+...-+.|++++|..||..++++++..|.+.+||++..+.+.... +.+.+....|.+....+++++.|+.+++|=.
T Consensus 238 ~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf 317 (910)
T KOG1539|consen 238 MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF 317 (910)
T ss_pred EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence 67764459999999999999999999999999999999888777665 2356666777776666666666665554421
Q ss_pred C--CC---------------------------------------------------------------------------
Q 003177 717 E--TQ--------------------------------------------------------------------------- 719 (842)
Q Consensus 717 ~--t~--------------------------------------------------------------------------- 719 (842)
+ .+
T Consensus 318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 1 11
Q ss_pred -----------------------------------eE-EEEEeCCC------CCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003177 720 -----------------------------------VC-RLKLQGHK------NQVHSVCWNTSGEYLASVS-DELVRVWS 756 (842)
Q Consensus 720 -----------------------------------~~-~~~l~~h~------~~V~sl~~spdg~~Lasgs-Dg~I~IwD 756 (842)
.. .+.+ .+. ..+++++.++.|++.+.|. .|.|.+|+
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L-~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL-DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe-cCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 00 0000 011 3577888899999999888 89999999
Q ss_pred cCCCCCceeEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-------------------------
Q 003177 757 IGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL------------------------- 808 (842)
Q Consensus 757 l~s~~~~~~i~~~---~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~------------------------- 808 (842)
+.++ .....+ ..|..+|+.++...-++.+++++.+|.+++||..+..++
T Consensus 477 mQSG---i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 477 MQSG---IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred cccC---eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 9988 334444 578999999999999999999999999999998764311
Q ss_pred -----------------EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 809 -----------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 809 -----------------~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.+.+|.+.|++++|||||++|++++.|++|++||
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 2346999999999999999999999999999998
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.1e-22 Score=226.89 Aligned_cols=252 Identities=21% Similarity=0.372 Sum_probs=221.8
Q ss_pred CEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEE
Q 003177 573 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 652 (842)
Q Consensus 573 ~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~ 652 (842)
.++..+..+-.++|||... +..|...|.|+.....++.+++|+.|..+-+|.+..... +..+.+|..+|.++.
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-ITSLTGHESPIESLT 77 (825)
T ss_pred cccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch-hheeeccCCcceeee
Confidence 3445555566777887543 446888899998877889999999999999999987654 667899999999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCC
Q 003177 653 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 731 (842)
Q Consensus 653 fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~ 731 (842)
|++. ..+|++|+.+|+|++||++.++.++++.+ ...+.++.|+|-+.+++.++.|..+.+||.+..-|.+.+.+|...
T Consensus 78 f~~~-E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 78 FDTS-ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred cCcc-hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcce
Confidence 9998 55888999999999999999998887765 457899999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-E
Q 003177 732 VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T 809 (842)
Q Consensus 732 V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~ 809 (842)
|.++.|+|+|++++.++ |.+++|||+..+ +.+..|..|...+..+.|+|..-.++.|+.|++|++||+++-+.+ .
T Consensus 157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred eEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 99999999999999999 799999999888 788999999999999999999999999999999999999988877 4
Q ss_pred EccCCCCeeEEEEeCCCCEEEEEeCC
Q 003177 810 LSAHDKLVSSLAASTVNGMVASASHD 835 (842)
Q Consensus 810 ~~~h~~~V~sla~spdg~~Lasgs~D 835 (842)
.......|.+++|+|+++.+++|..+
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cCCccCCceeeeecCCceeeecCchh
Confidence 44557889999999999988887654
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=8.2e-23 Score=227.82 Aligned_cols=239 Identities=26% Similarity=0.413 Sum_probs=216.2
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003177 552 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 631 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 631 (842)
..+.+..|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|+.+|.+|.|+++..+|++|+.+|+|++||+
T Consensus 20 ~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 20 DTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred cchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 34556689999999999778899999999999999999888888889999999999999999999999999999999999
Q ss_pred CCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec-CCeeEEEEeCCCCEEEEEEcCCe
Q 003177 632 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENY 710 (842)
Q Consensus 632 ~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~~v~~sp~g~~l~~~s~dg~ 710 (842)
+..+ .++++.+|...+.+++|+|-+. ++++++.|+.+++||++...|.+.+..+ ..+.++.|+|+|++++.++.|..
T Consensus 100 eeAk-~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 100 EEAK-IVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhh-hhhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce
Confidence 9765 4889999999999999999977 5589999999999999988899888853 44788899999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003177 711 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 789 (842)
Q Consensus 711 I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~ 789 (842)
++|||+..|+....|..|.+.|.++.|+|..-+++.|+ |++|++||+++. +.+.........|.+..|++++..++
T Consensus 178 vki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred eeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCCceeee
Confidence 99999999999999999999999999999999999999 999999999876 67777777788999999999999777
Q ss_pred EEEcCC
Q 003177 790 VIGCYE 795 (842)
Q Consensus 790 sgs~dg 795 (842)
+|....
T Consensus 255 ~G~q~s 260 (825)
T KOG0267|consen 255 SGEQIS 260 (825)
T ss_pred cCchhh
Confidence 766543
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=8.1e-20 Score=203.40 Aligned_cols=281 Identities=17% Similarity=0.217 Sum_probs=229.2
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeE-EEEeccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003177 552 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVW 629 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~-~~~l~~h-~~~I~~l~fspdg~~Latgs~Dg~I~IW 629 (842)
..+.+.--..+|.|++|+.+.+.||.+-.||.|.||++...=. ...+.++ +..|.+++|+ ++..|++.+.+|.|.-|
T Consensus 17 rcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 17 RCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEW 95 (691)
T ss_pred EEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEE
Confidence 3444555567899999999999999999999999999986433 3455554 4679999999 55678899999999999
Q ss_pred EcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee---cCCeeEEEEeCCCCEEEEEE
Q 003177 630 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAA 706 (842)
Q Consensus 630 Dl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~~v~~sp~g~~l~~~s 706 (842)
|+.+.+. ...+....+.|++++.+|.+. .++.|++||.++++++..++....... .+.+.++.|+|++..++.|+
T Consensus 96 Dl~~lk~-~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 96 DLHTLKQ-KYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred ecccCce-eEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence 9998664 666777789999999999976 566778899999999988887665543 47799999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEEe-------C-CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003177 707 IENYISILDVETQVCRLKLQ-------G-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS 778 (842)
Q Consensus 707 ~dg~I~IwDl~t~~~~~~l~-------~-h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~s 778 (842)
.||.|++||+.++..+.... . ...-|.++.|-.++.++..-+.|+|.+||...+ ..+..+..|...|.+
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl~ 250 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG---TLIQSHSCHDADVLA 250 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc---chhhhhhhhhcceeE
Confidence 99999999999987666221 1 233567788876665444334999999999888 788888999999999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeE--E---EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 779 CVFHPTFPSLLVIGCYETLELWNMTENKT--L---TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 779 v~~spdg~~L~sgs~dg~I~Iwdl~~~~~--~---~~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
++..+++.++++++.|+.|.-|...+++. + ....|...|.+++..++ .|++|+.|..|.+
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 99999999999999999999888877643 2 44578899999999876 8999999998865
No 136
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=4.6e-21 Score=195.75 Aligned_cols=258 Identities=19% Similarity=0.298 Sum_probs=215.6
Q ss_pred EEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEE
Q 003177 574 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 653 (842)
Q Consensus 574 ~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~f 653 (842)
.|++.-.++++.. ..++.+.+|.+.|+.++.......+.+++.|.+.+||.++++. ++..+.+|.+.|++|.|
T Consensus 126 rivssFk~~t~~~------~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-CL~~Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF------RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-CLATYTGHTGSVNSIKF 198 (481)
T ss_pred hheeeecCCceeE------eehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc-ceeeecccccceeeEEe
Confidence 4555556665432 4567789999999999998877899999999999999999976 58899999999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEEC------CC--------Cc--------------------------eeeEEe-ecCCeeE
Q 003177 654 HPSKEDLLCSCDNNSEIRYWSI------NN--------GS--------------------------CAGVFK-CQSGATQ 692 (842)
Q Consensus 654 spdg~~llasgs~Dg~I~vwDl------~t--------~~--------------------------~i~~~~-~~~~i~~ 692 (842)
++.+. ++++++.|++-.||.. .. ++ ++..+. +...|.+
T Consensus 199 h~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 199 HNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 99865 7779999999999962 11 00 111111 2234667
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003177 693 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 771 (842)
Q Consensus 693 v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 771 (842)
..|...+..+++++.|.+..+||+++++.+..+.+|....+.++-+|..+++++.+ |.+.++||++.. ...+..|.+
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV~VFQG 355 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSVAVFQG 355 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh--cceeeeecc
Confidence 77888899999999999999999999999999999999999999999999999999 999999999843 467888999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe-EEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 772 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 772 ~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~-~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|...|+++.|..+.+ +++++.|.+|+|||+++-. .+.....+.+++.++++..+.+|+.--++..|+|||
T Consensus 356 HtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 356 HTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 999999999998876 8999999999999998764 445556778899999998888888888888899987
No 137
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=3.5e-20 Score=206.36 Aligned_cols=345 Identities=16% Similarity=0.237 Sum_probs=252.0
Q ss_pred ccCCCCCeeEEEEecCCCCcccccCCcccCCC---------------ceEEeccCCCceEEeecCCCCCCCccccccccc
Q 003177 480 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMD---------------RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 544 (842)
Q Consensus 480 ~~~~s~~~s~~~~~~~~~~~~~~~~~~l~~~~---------------~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~ 544 (842)
..+++.++++|.|.++...+.......+..+. .++.+-+..+..+ +|..
T Consensus 282 LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h----------------lWkt 345 (764)
T KOG1063|consen 282 LLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH----------------LWKT 345 (764)
T ss_pred heecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE----------------EEec
Confidence 34566789999999988754444443333332 2222333333333 3332
Q ss_pred CCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC----CCeEEEEeccCCCCeEEEEEcCCCCEEEEE
Q 003177 545 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLSRLATS 620 (842)
Q Consensus 545 ~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~----t~~~~~~l~~h~~~I~~l~fspdg~~Latg 620 (842)
.....+.....+.||.+.|.+++|+|.|++|++++.|-+-+||-.- +.-.+..-.-|...++|++|-+....+++|
T Consensus 346 ~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSg 425 (764)
T KOG1063|consen 346 KDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSG 425 (764)
T ss_pred cCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeec
Confidence 2333445566788999999999999999999999999999998644 112333345688889999999876788888
Q ss_pred eCCCeEEEEEcC-------------------------------------------CCC----------------------
Q 003177 621 SADRTVRVWDTE-------------------------------------------NPD---------------------- 635 (842)
Q Consensus 621 s~Dg~I~IWDl~-------------------------------------------t~~---------------------- 635 (842)
...+.+|+|+.. ++.
T Consensus 426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 888899999754 000
Q ss_pred ----------ceeeEeecCccceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCceeeEEee-cCCeeEEEEeCCC
Q 003177 636 ----------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL 699 (842)
Q Consensus 636 ----------~~i~~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g 699 (842)
..+..+.||...|++++.+|+++ ++++++.. ..|++|+..+...+..+.. .-.|+.++|+|++
T Consensus 506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg 584 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDG 584 (764)
T ss_pred HHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCC
Confidence 01234567999999999999976 77777643 4699999998877776654 4569999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCe-E---EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE--EeecC
Q 003177 700 GRILAAAIENYISILDVETQV-C---RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH--ELSCT 772 (842)
Q Consensus 700 ~~l~~~s~dg~I~IwDl~t~~-~---~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~--~~~~~ 772 (842)
++|++++.|.++.+|...... . ....+.|+.-|.+..|+|++.++++++ |.+|+||....... ..+. ....+
T Consensus 585 ~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~ 663 (764)
T KOG1063|consen 585 RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD-KYISRFACLKF 663 (764)
T ss_pred cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh-hhhhhhchhcc
Confidence 999999999999999875431 1 223677999999999999999999999 99999999887632 2222 23346
Q ss_pred CCceEEEEEeCC-----CCEEEEEEcCCeEEEEECC------C-CeEE------EEccCCCCeeEEEEeCCC--------
Q 003177 773 GNKFHSCVFHPT-----FPSLLVIGCYETLELWNMT------E-NKTL------TLSAHDKLVSSLAASTVN-------- 826 (842)
Q Consensus 773 ~~~I~sv~~spd-----g~~L~sgs~dg~I~Iwdl~------~-~~~~------~~~~h~~~V~sla~spdg-------- 826 (842)
...|+.+++.|- +..+++|-..|.|.+|... + +... ...+|...|+.+.|.|..
T Consensus 664 ~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~ 743 (764)
T KOG1063|consen 664 SLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDK 743 (764)
T ss_pred CCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecccccccccccc
Confidence 788999988763 2357778888999999965 1 1111 234677889999999752
Q ss_pred --CEEEEEeCCCcEEEcC
Q 003177 827 --GMVASASHDKCVKIWK 842 (842)
Q Consensus 827 --~~Lasgs~DG~V~IWd 842 (842)
..|++|++|..++|++
T Consensus 744 ~~l~la~~g~D~~vri~n 761 (764)
T KOG1063|consen 744 EWLNLAVGGDDESVRIFN 761 (764)
T ss_pred ceeEEeeecccceeEEee
Confidence 2579999999999985
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.2e-20 Score=200.32 Aligned_cols=259 Identities=13% Similarity=0.186 Sum_probs=205.1
Q ss_pred EEECC-CcEEEEecCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeeEeecCccceEEEEE
Q 003177 577 TGGHD-KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 653 (842)
Q Consensus 577 sgs~D-g~I~vwd~~t~~~~~~l~~h-~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~f 653 (842)
+++.| ..+.+||+.+|....++++. ...-.++... .+.+++++.. ...|.+|.+....... .+.--.++|.+++-
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s 89 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALAS 89 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeec
Confidence 33444 45999999999998888765 2222222222 2356666654 4579999998654422 33445688999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECC---------CCeEEE
Q 003177 654 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE---------TQVCRL 723 (842)
Q Consensus 654 spdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~---------t~~~~~ 723 (842)
+|+|. +++.|+..|.|++|.+.+|..+.++.. -..|+|+.|+.|+.+|++++.||.|.+|++. +-+++.
T Consensus 90 ~n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~ 168 (476)
T KOG0646|consen 90 SNLGY-FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH 168 (476)
T ss_pred CCCce-EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence 99976 454666899999999999999888764 4569999999999999999999999999763 346788
Q ss_pred EEeCCCCCEEEEEEcCC--CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003177 724 KLQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 800 (842)
Q Consensus 724 ~l~~h~~~V~sl~~spd--g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iw 800 (842)
.+..|.-+|+.+...+. ..+|++++ |.++++||+..+ ..+..+. ....+.+++++|-+..+++|+.+|.|.+.
T Consensus 169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 169 IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred eeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEee
Confidence 89999999999988765 35788888 999999999988 5555544 46789999999999999999999999998
Q ss_pred ECCCCe-----------------EEEEccCCC--CeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 801 NMTENK-----------------TLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 801 dl~~~~-----------------~~~~~~h~~--~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++.... ...+.+|.+ .|+|++++-||.+|++|+.||.|+|||
T Consensus 245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 875432 125678888 999999999999999999999999997
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=8.2e-19 Score=195.46 Aligned_cols=270 Identities=14% Similarity=0.180 Sum_probs=212.3
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCC-CCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS-TSKVESCHFSPDGKLLATGGHDKKAVLWC 588 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH-~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd 588 (842)
.++.+|.+-.+++|++|..... +-...++.+| .+.|.+++|++ +..|++.+.+|.|.-||
T Consensus 36 kS~~lAvsRt~g~IEiwN~~~~------------------w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 36 KSNQLAVSRTDGNIEIWNLSNN------------------WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWD 96 (691)
T ss_pred cCCceeeeccCCcEEEEccCCC------------------ceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEe
Confidence 4466899999999999966543 1223445554 46799999995 55777888899999999
Q ss_pred cCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceee-EeecCccceEEEEEcCCCCcEEEEEeCC
Q 003177 589 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN 667 (842)
Q Consensus 589 ~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~-~~~~h~~~V~sl~fspdg~~llasgs~D 667 (842)
+.+++.+..+....+.|++++.+|.+..++.|++||.++.++...+..... .+...++.|.+++|+|++.. +++|+.|
T Consensus 97 l~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-i~~Gs~D 175 (691)
T KOG2048|consen 97 LHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-IAGGSID 175 (691)
T ss_pred cccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-EEecccC
Confidence 999999999999999999999999999999999999888888776553332 33345689999999999764 5599999
Q ss_pred CcEEEEECCCCceeeEEee-----cC----CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc
Q 003177 668 SEIRYWSINNGSCAGVFKC-----QS----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 738 (842)
Q Consensus 668 g~I~vwDl~t~~~i~~~~~-----~~----~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~s 738 (842)
|.|++||..++..+..... .. -|.++.|- ..+.|++|...|.|.+||...+..+..+..|...|.+++..
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~ 254 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA 254 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEc
Confidence 9999999999887773321 22 15566666 44789999999999999999999999999999999999999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 739 TSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 802 (842)
Q Consensus 739 pdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl 802 (842)
+++.++++++ |+.|.-|...+... .........|...+.+++..++ .|++|+.|..+.+-..
T Consensus 255 ~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 255 DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 9999999888 99998888876543 2233344567778888887776 6667766665555433
No 140
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=5.6e-20 Score=189.49 Aligned_cols=285 Identities=19% Similarity=0.332 Sum_probs=219.3
Q ss_pred EEecCCCCCeEEEEEcC-----CCCEEEEEECCCcEEEEecCCCe---EEEEe--ccCCCCeEEEEEcCC----CCEEEE
Q 003177 554 QLIPASTSKVESCHFSP-----DGKLLATGGHDKKAVLWCTESFT---VKSTL--EEHTQWITDVRFSPS----LSRLAT 619 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSp-----dg~~Lasgs~Dg~I~vwd~~t~~---~~~~l--~~h~~~I~~l~fspd----g~~Lat 619 (842)
.....|+.+|..++|++ .-..+|+++. ..|.+|.....- .+..+ ..|......++|+-| ..++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34568999999999985 2335666654 578888765432 23333 247778888999765 457899
Q ss_pred EeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee----cCCeeEEEE
Q 003177 620 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRF 695 (842)
Q Consensus 620 gs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~----~~~i~~v~~ 695 (842)
++.-|.|+|.|+.++. ....+.+|...|+.|.|+|+...++++++.|..|++|++.+..|+..|.. .+.|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~-~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQ-CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhh-hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 9999999999999865 47889999999999999999999999999999999999999999999874 567999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCe------EEE----------------------EEeCCCCCEEEEEEcCCCCEEEEE
Q 003177 696 QPRLGRILAAAIENYISILDVETQV------CRL----------------------KLQGHKNQVHSVCWNTSGEYLASV 747 (842)
Q Consensus 696 sp~g~~l~~~s~dg~I~IwDl~t~~------~~~----------------------~l~~h~~~V~sl~~spdg~~Lasg 747 (842)
++++.+|++++.|..|.+|++...+ +.. +-..|...|-|+.|- |+++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 9999999999999999999998321 110 112356666666664 5788887
Q ss_pred e-CCeEEEEEcCCC-----------CCceeEEEeecCCCceEEE--EEeCCCCEEEEEEcCCeEEEEECCCCeEE---EE
Q 003177 748 S-DELVRVWSIGSG-----------SKGECIHELSCTGNKFHSC--VFHPTFPSLLVIGCYETLELWNMTENKTL---TL 810 (842)
Q Consensus 748 s-Dg~I~IwDl~s~-----------~~~~~i~~~~~~~~~I~sv--~~spdg~~L~sgs~dg~I~Iwdl~~~~~~---~~ 810 (842)
+ ++.|..|....- .....+.++.-....|+-+ +|.+-.+.|+.|...|.|++||++..+.. ++
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 7 999999987211 1112334444444555544 56777889999999999999999887653 22
Q ss_pred c--cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 811 S--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 811 ~--~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
. .....|...+|+.|+.+|+..++|++|.-||
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 2 3356789999999999999999999999886
No 141
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=8.8e-20 Score=195.06 Aligned_cols=293 Identities=18% Similarity=0.270 Sum_probs=213.5
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEecCC----CeEEEEeccCCCCeEEEEEcC-CCCEEEEE
Q 003177 548 FTFTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLATS 620 (842)
Q Consensus 548 ~~~~~i~~l~gH~~~V~sv~fSpdg--~~Lasgs~Dg~I~vwd~~t----~~~~~~l~~h~~~I~~l~fsp-dg~~Latg 620 (842)
..+....+++-|.+.|++++|+|.. +++|+|..-|.|-+||+.+ ...+..+..|..+|.++.|+| +...+++.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 3445567778899999999999954 5899999999999999942 334566788999999999999 46789999
Q ss_pred eCCCeEEEEEcCCCCce-eeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce-eeEEe-ecCCeeEEEEeC
Q 003177 621 SADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQP 697 (842)
Q Consensus 621 s~Dg~I~IWDl~t~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~~-~~~~i~~v~~sp 697 (842)
|+||+|++-|++..... +.........+.++.|+.+...++ .++.=|...+||++++.. ...+. +...|..++++|
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP 332 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence 99999999999865321 122222345667788888766555 555556999999998765 33332 345899999999
Q ss_pred CCCE-EEEEEcCCeEEEEECCCC---e-EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC-CCceeEEEee
Q 003177 698 RLGR-ILAAAIENYISILDVETQ---V-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-SKGECIHELS 770 (842)
Q Consensus 698 ~g~~-l~~~s~dg~I~IwDl~t~---~-~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~-~~~~~i~~~~ 770 (842)
-..+ +++++.|++.+|||++.- . ++.....|...|.+..|||.+-.|++.+ |+.|+|||..-- ........+.
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 6554 778888999999999853 1 2344556999999999999876677766 999999998411 1112222221
Q ss_pred c---CCC--ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCC-CCeeE-EEEeCCCC-EEEEEeCCCcEEEc
Q 003177 771 C---TGN--KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSS-LAASTVNG-MVASASHDKCVKIW 841 (842)
Q Consensus 771 ~---~~~--~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~-~~V~s-la~spdg~-~Lasgs~DG~V~IW 841 (842)
. +.. ......|.|+..+|+++..-..|-|||-..++.+ .+.... ..|.+ ..|+|-+. +++-++..|.|+||
T Consensus 413 Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 413 HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 1 111 2344689999999999999999999999988865 333322 24544 47999887 45555577889888
No 142
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=7.9e-20 Score=201.35 Aligned_cols=269 Identities=19% Similarity=0.310 Sum_probs=216.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEe
Q 003177 562 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 641 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~ 641 (842)
.|..++|-|||..|+.+.. ..+.|||...|..+.++++|.+.|+|++|+.||+.+++|+.|+.|.||+..-.. +..
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~Lk- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--ILK- 89 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--eee-
Confidence 6999999999998887754 579999999999999999999999999999999999999999999999876433 222
Q ss_pred ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 003177 642 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 721 (842)
Q Consensus 642 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~ 721 (842)
..|...|.|+.|+|-.. .+++|+- ...-+|.... +.+...+....+.+++|..||.+++.|-.+|+|.|-+-.. ++
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g-Ee 165 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG-EE 165 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcch-hhccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC-Cc
Confidence 35999999999999855 5667763 3566787763 3344444557789999999999999999999999986443 33
Q ss_pred EEEEe---CCCCCEEEEEEcCCC-----CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003177 722 RLKLQ---GHKNQVHSVCWNTSG-----EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 792 (842)
Q Consensus 722 ~~~l~---~h~~~V~sl~~spdg-----~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs 792 (842)
...+. +..++|.+++|+|.. ..+++.. ..++.+|.+.. ..+..-..-+....|+.+.++|.++++|+
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGG 241 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGG 241 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEcc
Confidence 33332 367899999999953 4566666 66788887754 34443444556678899999999999999
Q ss_pred cCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 793 CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 793 ~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+|+.+++|.-+.-.+-++-..+..|+.++..|++.+++.|+.||+|..|+
T Consensus 242 sdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 242 SDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 99999999865544446667788999999999999999999999998764
No 143
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=8e-21 Score=213.68 Aligned_cols=233 Identities=18% Similarity=0.346 Sum_probs=193.3
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEec
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSp-dg~~Lasgs~Dg~I~vwd~ 589 (842)
++++++.+..+.|.+|+..-.. .-..+..|..|+..|.+++|++ ...+|++|+.||.|++||+
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~----------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl 163 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSI----------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL 163 (839)
T ss_pred hhhheeecCCCcEEEEecCccc----------------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEee
Confidence 4577777777888888554321 1123567889999999999998 4568999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCC
Q 003177 590 ESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 668 (842)
Q Consensus 590 ~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 668 (842)
...+-..++.+..+.|.+|.|+| .+.+|+++.+.|.+.+||++....+...+..|.++|.|+.|+|+ ..+||+|+.|+
T Consensus 164 R~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK 242 (839)
T KOG0269|consen 164 RSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRDK 242 (839)
T ss_pred ecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCCc
Confidence 99888888989999999999999 57889999999999999999988888999999999999999996 55888999999
Q ss_pred cEEEEECCCCc--eeeEEeecCCeeEEEEeCCCCEEEEEEc---CCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcC-CC
Q 003177 669 EIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQ-VCRLKLQGHKNQVHSVCWNT-SG 741 (842)
Q Consensus 669 ~I~vwDl~t~~--~i~~~~~~~~i~~v~~sp~g~~l~~~s~---dg~I~IwDl~t~-~~~~~l~~h~~~V~sl~~sp-dg 741 (842)
.|+|||+.+.+ .+.++....++.++.|-|...+.++.+. |-.|+|||++.. -+..++..|...++.++|.. |-
T Consensus 243 ~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~ 322 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDR 322 (839)
T ss_pred cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCc
Confidence 99999998654 5566667788999999998777555443 779999999876 56778888999999999965 45
Q ss_pred CEEEEEe-CCeEEEEEcCCC
Q 003177 742 EYLASVS-DELVRVWSIGSG 760 (842)
Q Consensus 742 ~~Lasgs-Dg~I~IwDl~s~ 760 (842)
..+.+++ |++|..-.+++.
T Consensus 323 ~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 323 INLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeEeecCccHHHHhhhhcc
Confidence 5677777 888776655544
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=6.3e-20 Score=202.64 Aligned_cols=282 Identities=15% Similarity=0.211 Sum_probs=209.3
Q ss_pred cCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003177 508 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 587 (842)
Q Consensus 508 ~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vw 587 (842)
...+.+++.+..|+.|.+|+...-... ..-..+.....|.+.|..+.|-|....|++++.|.++++|
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr-------------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFR-------------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcc-------------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 345678899999999999955432111 0011235567899999999999966789999999999999
Q ss_pred ecCCCeEEEE--eccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc--------------------------ee
Q 003177 588 CTESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--------------------------SL 638 (842)
Q Consensus 588 d~~t~~~~~~--l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~t~~~--------------------------~i 638 (842)
|+++.+++.. +.+|...|.++||.+. ...|++|+.||.|.|||++.... -+
T Consensus 128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 9999888866 8899999999999995 56789999999999999873320 01
Q ss_pred eEeecCccceEE---EEEcCCCCcEEEEEeC-CCcEEEEECCCCceeeEEe--------e----cCCeeEEEEeCCCCEE
Q 003177 639 RTFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFK--------C----QSGATQMRFQPRLGRI 702 (842)
Q Consensus 639 ~~~~~h~~~V~s---l~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~~~--------~----~~~i~~v~~sp~g~~l 702 (842)
.....+...|.+ +.+..|.. .|++++. |+.|+|||+++..+..... . .-++.++.....|.++
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred cccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 122234444544 45555645 4556665 9999999998765443221 1 2347788888889999
Q ss_pred EEEEcCCeEEEEECCCC--eEEEEEeCCCCC--EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003177 703 LAAAIENYISILDVETQ--VCRLKLQGHKNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 777 (842)
Q Consensus 703 ~~~s~dg~I~IwDl~t~--~~~~~l~~h~~~--V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 777 (842)
++.+.|+.|++|++.+. .++..+.++... ...-..+||+.+|++|+ |..+++|.+.+.. .....+.+|.-.|+
T Consensus 287 ~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt 364 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--APPALLLGHTREVT 364 (720)
T ss_pred EEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--CChhhhhCcceEEE
Confidence 99999999999999864 445555544322 12335689999999999 9999999998874 45556778899999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCC
Q 003177 778 SCVFHPTF-PSLLVIGCYETLELWNMTEN 805 (842)
Q Consensus 778 sv~~spdg-~~L~sgs~dg~I~Iwdl~~~ 805 (842)
+++|.|.. .-+++++.|..++||++..+
T Consensus 365 ~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 365 TVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EEeeccccCCCceeeccCcceEEEeccCc
Confidence 99998754 34777788889999999654
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=7.9e-20 Score=196.22 Aligned_cols=256 Identities=18% Similarity=0.242 Sum_probs=200.9
Q ss_pred eEEEEEcCCCC-EEEEEECCCcEEEEecCCC--eE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce
Q 003177 563 VESCHFSPDGK-LLATGGHDKKAVLWCTESF--TV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 637 (842)
Q Consensus 563 V~sv~fSpdg~-~Lasgs~Dg~I~vwd~~t~--~~--~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~ 637 (842)
|.+++|+.... .+++.+.|..|++|.-... +. +....+. .-.|++......|+++|+..+.|+|||+.. +.+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~ 113 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRA-KLI 113 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHH-HHH
Confidence 89999987664 2344566888999964322 22 2222222 334554444558999999999999999995 556
Q ss_pred eeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecC--CeeEEEEeCCCCEEE-EEEcCCeEEEE
Q 003177 638 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRIL-AAAIENYISIL 714 (842)
Q Consensus 638 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~--~i~~v~~sp~g~~l~-~~s~dg~I~Iw 714 (842)
.+.+.+|...|+++.++... .+|++++..|.|.|..+.++.....|.+.. .+.-+.|++..++++ +++.+|.|.+|
T Consensus 114 hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred hhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 88999999999999998774 478899999999999999998888888753 366899999877755 56678999999
Q ss_pred ECCCCeEEEEE-eCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003177 715 DVETQVCRLKL-QGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 791 (842)
Q Consensus 715 Dl~t~~~~~~l-~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sg 791 (842)
|+....+++.+ ..|..+...|||+|... +|++.+ |..|++||+++.....++. -..+...++|.++|.+|++|
T Consensus 193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 193 DVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAG 268 (673)
T ss_pred eccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee----ecCCcceeeecCCceEEEee
Confidence 99988777665 45999999999999665 555666 9999999999764333332 36788999999999999999
Q ss_pred EcCCeEEEEECCCCe-EE-EEccCCCCeeEEEEeCCC
Q 003177 792 GCYETLELWNMTENK-TL-TLSAHDKLVSSLAASTVN 826 (842)
Q Consensus 792 s~dg~I~Iwdl~~~~-~~-~~~~h~~~V~sla~spdg 826 (842)
...|.|+.||++..+ ++ .+..|...|++|+|-+.-
T Consensus 269 ~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999998765 33 677999999999998764
No 146
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=186.50 Aligned_cols=268 Identities=18% Similarity=0.289 Sum_probs=207.9
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEecCCC------------eEEEEec-cCCCCeEEEEEc-------CCCCEEEEEeC
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWCTESF------------TVKSTLE-EHTQWITDVRFS-------PSLSRLATSSA 622 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~------------~~~~~l~-~h~~~I~~l~fs-------pdg~~Latgs~ 622 (842)
...+.|+|||..|++-+.|..+.+|++... +...+++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 556999999999999999999999987521 0111111 134568888886 56788999999
Q ss_pred CCeEEEEEcCCCCceeeEee--cCcc---ceEEEEEcCCCCcEEEEEeCCCcEEEEEC-CCCceeeEE---ee-----cC
Q 003177 623 DRTVRVWDTENPDYSLRTFT--GHST---TVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAGVF---KC-----QS 688 (842)
Q Consensus 623 Dg~I~IWDl~t~~~~i~~~~--~h~~---~V~sl~fspdg~~llasgs~Dg~I~vwDl-~t~~~i~~~---~~-----~~ 688 (842)
+.-|++||.-+++. ...+. .|-. ...+++|+|||..++ ++...+|++||+ +.|.-...+ .. .+
T Consensus 132 ~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999998764 22232 2333 346899999999766 556889999999 555432221 11 34
Q ss_pred CeeEEEEeCCCC-EEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcee
Q 003177 689 GATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC 765 (842)
Q Consensus 689 ~i~~v~~sp~g~-~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~ 765 (842)
-+.+++|+|... .+++++....+-||.-....++..+.+|.+.|+.++|.++|+.|++|+ |..|.+||++... ..
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~p 286 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DP 286 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--ch
Confidence 588999999654 788888899999999999999999999999999999999999999999 8899999998753 44
Q ss_pred EEEeecCCC---ceEEEEEeCCCCEEEEEEcCCeEEEEECCC-Ce-EEEEccCCCCeeEEEEeCCCCEEEEEeCC
Q 003177 766 IHELSCTGN---KFHSCVFHPTFPSLLVIGCYETLELWNMTE-NK-TLTLSAHDKLVSSLAASTVNGMVASASHD 835 (842)
Q Consensus 766 i~~~~~~~~---~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~-~~-~~~~~~h~~~V~sla~spdg~~Lasgs~D 835 (842)
+..+..|.. .-.-+...|++++|++|+.+|.|++||+++ +. +..+..|...|+.++++|--.++|+++..
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 555544433 334456688999999999999999999988 55 34677899999999999998888888743
No 147
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=2.3e-19 Score=182.29 Aligned_cols=282 Identities=17% Similarity=0.315 Sum_probs=217.8
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEe
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC 588 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSp-dg~~Lasgs~Dg~I~vwd 588 (842)
..+++.+|+.|+.+.+|+.....+-+.... .-+.........-.+|.-.|.++.|-| |...+.+++.|.+++|||
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~l----i~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWD 130 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGL----IAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWD 130 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccc----eeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEee
Confidence 347889999999999997766543211110 001111111222357888999999999 667899999999999999
Q ss_pred cCCCeEEEEeccCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEe
Q 003177 589 TESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 665 (842)
Q Consensus 589 ~~t~~~~~~l~~h~~~I~~l~fspd---g~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 665 (842)
..+......|+ ..+.|++-+++|- .-+||+|..|-.|++.|+.++.+ .+++.+|...|.++.|+|..+++|++|+
T Consensus 131 tnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~Wsp~~e~vLatgs 208 (397)
T KOG4283|consen 131 TNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVEWSPSSEWVLATGS 208 (397)
T ss_pred cccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEEeccCceeEEEecC
Confidence 99998888875 5577899899883 44678888899999999999775 7899999999999999999999999999
Q ss_pred CCCcEEEEECCCC-ceeeEEe---------------ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeC--
Q 003177 666 NNSEIRYWSINNG-SCAGVFK---------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-- 727 (842)
Q Consensus 666 ~Dg~I~vwDl~t~-~~i~~~~---------------~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~-- 727 (842)
.||.|++||++.. .|...+. +.+.+..++|+.++.++++++.|..+++|+..+|+....-.+
T Consensus 209 aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~ 288 (397)
T KOG4283|consen 209 ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPI 288 (397)
T ss_pred CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccc
Confidence 9999999999865 4444443 234588999999999999999999999999998754322111
Q ss_pred -CCC----CEEEEEEcCCCCEEE-EEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 728 -HKN----QVHSVCWNTSGEYLA-SVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 801 (842)
Q Consensus 728 -h~~----~V~sl~~spdg~~La-sgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwd 801 (842)
|.. .+. +. +-+...++ .-.++.+.++++-++ ..+..+..|...+.++++-|+-..++++..|+.|+.|-
T Consensus 289 ~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sg---s~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 289 IHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEG---SFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred cccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCc---eEEEeeecccceeeEEeecCchhhhhccccCCcccccc
Confidence 111 111 22 22333333 333889999999888 78888999999999999999999999999999999998
Q ss_pred C
Q 003177 802 M 802 (842)
Q Consensus 802 l 802 (842)
.
T Consensus 364 p 364 (397)
T KOG4283|consen 364 P 364 (397)
T ss_pred c
Confidence 6
No 148
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=7.4e-20 Score=191.41 Aligned_cols=243 Identities=18% Similarity=0.368 Sum_probs=189.7
Q ss_pred cCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEecC----------------CCeEEEEeccCCCCeEEEEEcCC-CCEE
Q 003177 557 PASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTE----------------SFTVKSTLEEHTQWITDVRFSPS-LSRL 617 (842)
Q Consensus 557 ~gH~~~V~sv~fSpdg--~~Lasgs~Dg~I~vwd~~----------------t~~~~~~l~~h~~~I~~l~fspd-g~~L 617 (842)
.+|.+.|.-+..++-+ .+.|+-+..|.|.|||+. ..+++.++.+|...=+.|+|+|- ...|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 4677888888777744 567777888999999864 24567888999999999999993 3358
Q ss_pred EEEeCCCeEEEEEcCCCCcee--eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---ceeeEEeecCCeeE
Q 003177 618 ATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKCQSGATQ 692 (842)
Q Consensus 618 atgs~Dg~I~IWDl~t~~~~i--~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~---~~i~~~~~~~~i~~ 692 (842)
++|..-+.|++|...++...+ ..+.+|+..|..|+|+|....+|++|+.||+|+|||++.+ .++.+..+.+.|+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 888888999999998876543 3567899999999999999999999999999999999988 56667667889999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCC---CeEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCce---
Q 003177 693 MRFQPRLGRILAAAIENYISILDVET---QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGE--- 764 (842)
Q Consensus 693 v~~sp~g~~l~~~s~dg~I~IwDl~t---~~~~~~l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~--- 764 (842)
+.|+.+..+|++|+.||+++|||++. +.++..|+-|..+|++|.|+|... .|++++ |..|.|||+......+
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~ 387 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID 387 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence 99999988899999999999999985 578899999999999999999543 344444 9999999996532200
Q ss_pred ------------eEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEE
Q 003177 765 ------------CIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELW 800 (842)
Q Consensus 765 ------------~i~~~~~~~~~I~sv~~spdg~-~L~sgs~dg~I~Iw 800 (842)
.+..+......+..+.|++.-+ +|++.+.|| +.||
T Consensus 388 ~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 388 QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 0111111234567788888764 455556666 4444
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=1.9e-19 Score=192.55 Aligned_cols=274 Identities=15% Similarity=0.219 Sum_probs=213.4
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEecC
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSp-dg~~Lasgs~Dg~I~vwd~~ 590 (842)
.+|++|+.-+.|-+|+..... .....+..+..|..+|.++.|+| +...+++.+.||+|++-|++
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~~---------------~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQE---------------KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred eEEEEccCCCcEEEEecCCCC---------------CccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 689999999999999774111 11123677889999999999999 45578999999999999998
Q ss_pred CCeEE--EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCC
Q 003177 591 SFTVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 668 (842)
Q Consensus 591 t~~~~--~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 668 (842)
..... ..+......+.++.|+.+...++++..=|.+.+||+++++.....+.-|...|.+++++|...+++++|+.|+
T Consensus 266 ~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~ 345 (498)
T KOG4328|consen 266 GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ 345 (498)
T ss_pred chhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCc
Confidence 75433 3333355667888999888888888888899999999988777888889999999999999999999999999
Q ss_pred cEEEEECCCCc-----eeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECC----CCeEEEEEeCCCC----C--EE
Q 003177 669 EIRYWSINNGS-----CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE----TQVCRLKLQGHKN----Q--VH 733 (842)
Q Consensus 669 ~I~vwDl~t~~-----~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~----t~~~~~~l~~h~~----~--V~ 733 (842)
+++|||++.-. .+..+.+...|.++.|+|.++.|++.+.|+.|+|||.. ...+...+. |.. + ..
T Consensus 346 T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~f 424 (498)
T KOG4328|consen 346 TAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPF 424 (498)
T ss_pred ceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccch
Confidence 99999998522 35666777889999999999999999999999999984 333333333 332 2 23
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC-ceEE-EEEeCCCCEEEEEEc-CCeEEEEECCC
Q 003177 734 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN-KFHS-CVFHPTFPSLLVIGC-YETLELWNMTE 804 (842)
Q Consensus 734 sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~-~I~s-v~~spdg~~L~sgs~-dg~I~Iwdl~~ 804 (842)
-..|.|+..+|+++. -..|-|||-..+ ..+..+..... .|.+ ..|+|-+..+++|+. .|.|+||.-+.
T Consensus 425 KA~W~P~~~li~vg~~~r~IDv~~~~~~---q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 425 KAAWDPDYNLIVVGRYPRPIDVFDGNGG---QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred hheeCCCccEEEEeccCcceeEEcCCCC---EEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 468999999999999 778999998776 55555443332 4444 479999885665554 56899886543
No 150
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=2.5e-17 Score=181.89 Aligned_cols=313 Identities=27% Similarity=0.431 Sum_probs=236.8
Q ss_pred ccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCC-CCeEEEEE-cCCCC-EEEEEEC-CC
Q 003177 507 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHF-SPDGK-LLATGGH-DK 582 (842)
Q Consensus 507 l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~-~~V~sv~f-Spdg~-~Lasgs~-Dg 582 (842)
+......+..++.|+.+.+|...... ..+..+.++. ..+..+.+ ++++. +++..+. |+
T Consensus 73 ~~~~~~~~~~~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 134 (466)
T COG2319 73 FSPDGELLLSGSSDGTIKLWDLDNGE------------------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134 (466)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCc------------------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCc
Confidence 34455677777788888888665442 2234444433 36777777 78887 5555444 99
Q ss_pred cEEEEecCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcE
Q 003177 583 KAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 660 (842)
Q Consensus 583 ~I~vwd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~l 660 (842)
.+.+|+... ......+..|...|.+++|+|++.++++++. |+.+++|++.... .+..+.+|...|.+++|+|++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~ 213 (466)
T COG2319 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLL 213 (466)
T ss_pred cEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceE
Confidence 999999998 7888889999999999999999999998886 9999999999743 477788899999999999988756
Q ss_pred EEEEeCCCcEEEEECCCCceee-EEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-EEEEeCCCCCEEEEEEc
Q 003177 661 LCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWN 738 (842)
Q Consensus 661 lasgs~Dg~I~vwDl~t~~~i~-~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~-~~~l~~h~~~V~sl~~s 738 (842)
+++++.|+.|++||...+..+. .+..+.......|++++..+++++.++.+++||++.... +..+..|...|.++.|.
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 293 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence 6666899999999999777777 454433332227999988888999999999999987654 44446788999999999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEE-EcCCeEEEEECCCCeEEEEccCC
Q 003177 739 TSGEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVI-GCYETLELWNMTENKTLTLSAHD 814 (842)
Q Consensus 739 pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~--~~~~~~I~sv~~spdg~~L~sg-s~dg~I~Iwdl~~~~~~~~~~h~ 814 (842)
|++..+++++ |+.+.+||+.... ..... ..|...+..+.+.+++..++.+ ..|+.+.+|++............
T Consensus 294 ~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 370 (466)
T COG2319 294 PDGKLLASGSSDGTVRLWDLETGK---LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370 (466)
T ss_pred CCCCEEEEeeCCCcEEEEEcCCCc---eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC
Confidence 9888888877 8889999888763 33333 3566678888884332556666 57788999999888733332333
Q ss_pred CCeeEEEEeCCCCEEEE-EeCCCcEEEcC
Q 003177 815 KLVSSLAASTVNGMVAS-ASHDKCVKIWK 842 (842)
Q Consensus 815 ~~V~sla~spdg~~Las-gs~DG~V~IWd 842 (842)
..+..+.+.+ ...++. +..++.+.+|+
T Consensus 371 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 371 SNVLSVSFSP-DGRVVSSGSTDGTVRLWD 398 (466)
T ss_pred ceEEEEEECC-CCCEEEEecCCCceEEEe
Confidence 3388999988 544444 68899999996
No 151
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2e-20 Score=219.18 Aligned_cols=243 Identities=19% Similarity=0.353 Sum_probs=202.1
Q ss_pred CCeEEEEEcCCCCE----EEEEECCCcEEEEecCCC------eEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEE
Q 003177 561 SKVESCHFSPDGKL----LATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVW 629 (842)
Q Consensus 561 ~~V~sv~fSpdg~~----Lasgs~Dg~I~vwd~~t~------~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IW 629 (842)
...+.++|.+.|.. ||.|..||.|.+||.... ..+.++..|++.|..+.|++.. ++||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 34678999886654 999999999999997652 2345667899999999999975 499999999999999
Q ss_pred EcCCCCceeeE-eecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCC---eeEEEEeCCCCE-EEE
Q 003177 630 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG---ATQMRFQPRLGR-ILA 704 (842)
Q Consensus 630 Dl~t~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~---i~~v~~sp~g~~-l~~ 704 (842)
|+.+.+.+... .....+.|.+++|+..-.++|++++.+|.+.|||++..+.+..+..... +..+.|+|+... +++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99976543332 1224578999999998889999999999999999999887777765444 789999998655 555
Q ss_pred EEcCC---eEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003177 705 AAIEN---YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 778 (842)
Q Consensus 705 ~s~dg---~I~IwDl~t~-~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~s 778 (842)
++.|. .|.+||++.. .++.++.+|...|.++.|++.+ .+|++++ |+.|.+|+..++ +.+..+....+.+..
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCFD 301 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCcceee
Confidence 55543 7999999865 6777888999999999999966 7788877 999999999998 889999888999999
Q ss_pred EEEeCCCC-EEEEEEcCCeEEEEECCCCe
Q 003177 779 CVFHPTFP-SLLVIGCYETLELWNMTENK 806 (842)
Q Consensus 779 v~~spdg~-~L~sgs~dg~I~Iwdl~~~~ 806 (842)
+.|.|... .+++++.||.|.||.+.+..
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999987 67788899999999997765
No 152
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=3.5e-17 Score=180.67 Aligned_cols=284 Identities=29% Similarity=0.466 Sum_probs=227.7
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEE
Q 003177 551 TEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRV 628 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~-Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~I 628 (842)
.....+..|...|.+++|+|++.++++++. |+.+++|++..+..+..+.+|...|.+++|+|++. .+++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 456778899999999999999999888886 99999999999889999999999999999999988 5555589999999
Q ss_pred EEcCCCCceee-EeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce-eeEE-eecCCeeEEEEeCCCCEEEEE
Q 003177 629 WDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSGATQMRFQPRLGRILAA 705 (842)
Q Consensus 629 WDl~t~~~~i~-~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~-~~~~~i~~v~~sp~g~~l~~~ 705 (842)
||...+.. +. .+.+|...+ ...|++++ .++++++.|+.+++|++..... +..+ .+...+.++.|.|++..++++
T Consensus 226 wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 226 WDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 98885443 44 678888775 44899998 4666899999999999987664 4443 335779999999988888888
Q ss_pred EcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEE-e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003177 706 AIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 781 (842)
Q Consensus 706 s~dg~I~IwDl~t~~~~~~l~--~h~~~V~sl~~spdg~~Lasg-s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~ 781 (842)
+.|+.+.+||..+........ .|...+..+.|.+++..++.+ . |+.+.+|++.... ....... ...+..+.+
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~ 378 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKTLEG-HSNVLSVSF 378 (466)
T ss_pred eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---eeEEecC-CceEEEEEE
Confidence 888889999999887666665 788889999994333566665 4 8889999998873 2222222 222888888
Q ss_pred eCCCCEEEE-EEcCCeEEEEECCCCeEEEEccCC-CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 782 HPTFPSLLV-IGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 782 spdg~~L~s-gs~dg~I~Iwdl~~~~~~~~~~h~-~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.+ ...++. +..++.+.+|+............. ..+....+++++..+++++.++.+++|+
T Consensus 379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 88 533443 577889999999998887555544 8899999999999999999999999995
No 153
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=6.3e-19 Score=186.31 Aligned_cols=296 Identities=19% Similarity=0.269 Sum_probs=209.5
Q ss_pred eEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC--
Q 003177 513 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-- 590 (842)
Q Consensus 513 ~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~-- 590 (842)
++++|+.|..|++|......... .+........|..|...|++|.|+|+|.+||+|+.+|.|.+|-..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~----------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGG----------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred ceecccCccceeeeeeeecCCCC----------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 89999999999999665543331 114556678899999999999999999999999999999999654
Q ss_pred ------C--------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCC
Q 003177 591 ------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 656 (842)
Q Consensus 591 ------t--------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspd 656 (842)
+ ......+.+|...|..++|+|++.++++++.|..+++||+..+. ....+..|...|..++|.|.
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~-l~~~~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ-LLAILDDHEHYVQGVAWDPL 176 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-eEeeccccccccceeecchh
Confidence 2 34456778999999999999999999999999999999999876 47888999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEE
Q 003177 657 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 736 (842)
Q Consensus 657 g~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~ 736 (842)
+. ++++-+.|...+++++.....+..... .....-.+.+. .....++|.-++. ......++
T Consensus 177 ~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~-~~m~~~~~~~~--------e~~s~rLfhDeTl---------ksFFrRls 237 (434)
T KOG1009|consen 177 NQ-YVASKSSDRHPEGFSAKLKQVIKRHGL-DIMPAKAFNER--------EGKSTRLFHDETL---------KSFFRRLS 237 (434)
T ss_pred hh-hhhhhccCcccceeeeeeeeeeeeeee-eEeeecccCCC--------CcceeeeeecCch---------hhhhhhcc
Confidence 76 555777788777777665444333321 00000011111 0112233322221 12345678
Q ss_pred EcCCCCEEEEEe-----CC-----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-----------------CCCEEE
Q 003177 737 WNTSGEYLASVS-----DE-----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-----------------TFPSLL 789 (842)
Q Consensus 737 ~spdg~~Lasgs-----Dg-----~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~sp-----------------dg~~L~ 789 (842)
|+|||.+|++.+ ++ ..++|+-... ..++..+.+.......+.++| -.+.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l--~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL--KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccc--cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEE
Confidence 889988887643 23 3355554322 234444444444444444433 123466
Q ss_pred EEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 790 VIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 790 sgs~dg~I~Iwdl~~~~~~--~~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
+....+.|+|||....+++ .-.-|-..|++++|++||..|+..|.||.+.+
T Consensus 316 aiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 316 AIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 6677779999999987776 34468899999999999999999999997643
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.9e-19 Score=192.04 Aligned_cols=236 Identities=19% Similarity=0.376 Sum_probs=186.6
Q ss_pred CCCEEEEEECCCcEEEEecCCCe---EEEE------------------eccCCCCeEEEEEcCC-CCEEEEEeCCCeEEE
Q 003177 571 DGKLLATGGHDKKAVLWCTESFT---VKST------------------LEEHTQWITDVRFSPS-LSRLATSSADRTVRV 628 (842)
Q Consensus 571 dg~~Lasgs~Dg~I~vwd~~t~~---~~~~------------------l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~I 628 (842)
.|+|+|.|+.|..|.|||+.-.. +..+ -.+|++.|.++.|+.+ ...||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 36799999999999999975211 1111 2369999999999875 567899999999999
Q ss_pred EEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CceeeEEeecCCeeEEEEeCCCC-EEEEEE
Q 003177 629 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLG-RILAAA 706 (842)
Q Consensus 629 WDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~~~~i~~v~~sp~g~-~l~~~s 706 (842)
||+.+++ +..++..|...|.++.|+|....+|++|+.|++|.+.|++. ...-..++..+.|..++|.|... .++++.
T Consensus 271 WD~~~g~-p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGK-PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCC-cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 9999976 47778889999999999999999999999999999999994 33445666778999999999655 466777
Q ss_pred cCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003177 707 IENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 783 (842)
Q Consensus 707 ~dg~I~IwDl~t~-~~~~~l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~sp 783 (842)
.||.|+-+|+|.. +++.++..|...|.++++++.-. ++++++ |+.|++|++..... ..+......-+...|.++.|
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDP 428 (463)
T ss_pred CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccceeecccCC
Confidence 8899999999976 99999999999999999988654 566666 99999999976532 22332222234467778888
Q ss_pred CCCE-EEEEEcCCeEEEEECCCCeEE
Q 003177 784 TFPS-LLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 784 dg~~-L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
+-.+ +++|+..+.++|||+.+...+
T Consensus 429 ~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 429 DVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CcceEEEecCccceEEEeecccChhH
Confidence 7765 455566668999999877654
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.5e-20 Score=218.33 Aligned_cols=274 Identities=20% Similarity=0.301 Sum_probs=215.7
Q ss_pred EEEEcCCCC-EEEEEE----------CCCcEEEEecCC--C----eEEEEeccCCCCeEEEEEcCCCCE----EEEEeCC
Q 003177 565 SCHFSPDGK-LLATGG----------HDKKAVLWCTES--F----TVKSTLEEHTQWITDVRFSPSLSR----LATSSAD 623 (842)
Q Consensus 565 sv~fSpdg~-~Lasgs----------~Dg~I~vwd~~t--~----~~~~~l~~h~~~I~~l~fspdg~~----Latgs~D 623 (842)
.++|+|++. ++|+|. .+.++-||.+.. . +.+..+ .-....+.++|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccC
Confidence 478999886 555542 244556664432 1 222223 23456889999987665 8899999
Q ss_pred CeEEEEEcCCC-----CceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe---ecCCeeEEEE
Q 003177 624 RTVRVWDTENP-----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRF 695 (842)
Q Consensus 624 g~I~IWDl~t~-----~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---~~~~i~~v~~ 695 (842)
|.|.+||...- ...+..+..|.+.|..++|++...+++++|+.||.|.|||+++.+.-..+. ..+.|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999998651 224567788999999999999999999999999999999998755444432 3567999999
Q ss_pred eCCCCEEE-EEEcCCeEEEEECCCCeEEEEEeCCCC--CEEEEEEcCCCC-EEEEEe--CC--eEEEEEcCCCCCceeEE
Q 003177 696 QPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGE-YLASVS--DE--LVRVWSIGSGSKGECIH 767 (842)
Q Consensus 696 sp~g~~l~-~~s~dg~I~IwDl~t~~~~~~l~~h~~--~V~sl~~spdg~-~Lasgs--Dg--~I~IwDl~s~~~~~~i~ 767 (842)
+..-.+++ +++.+|++.|||++..+.+..+..|.. .+..+.|+|++. .|++++ |+ .|.+||+|... ..++
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k 247 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLK 247 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cchh
Confidence 98666554 556678999999999988888876655 467899999874 444444 33 89999998764 5677
Q ss_pred EeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCC-EEEEEeCCCcEEEc
Q 003177 768 ELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW 841 (842)
Q Consensus 768 ~~~~~~~~I~sv~~spdg-~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~-~Lasgs~DG~V~IW 841 (842)
++.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+ .+......+..+.|+|... .+++++-||.|-||
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 788999999999999977 78899999999999999999998 6667788999999999776 88889999999987
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1e-18 Score=179.22 Aligned_cols=243 Identities=18% Similarity=0.268 Sum_probs=183.2
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc----eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEE
Q 003177 596 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 671 (842)
Q Consensus 596 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~----~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 671 (842)
..+++|.+.|++++|+.||++|+|++.|++|+||+++.-.. +++.-. .-+..+.+.|.||-..+++++-...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45789999999999999999999999999999999985321 111111 1235678999999998999998888999
Q ss_pred EEECCCC---ceeeEEe----------ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc
Q 003177 672 YWSINNG---SCAGVFK----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 738 (842)
Q Consensus 672 vwDl~t~---~~i~~~~----------~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~s 738 (842)
+|.+... .....+. +.-.+..+-+...+.+|++++.|..|.+||++ |..+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 9987532 2111111 12235566677788899999999999999999 77777777666667788999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCC-----CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-------
Q 003177 739 TSGEYLASVS-DELVRVWSIGSGS-----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN------- 805 (842)
Q Consensus 739 pdg~~Lasgs-Dg~I~IwDl~s~~-----~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~------- 805 (842)
|+|++|++++ .-.|+||.+--.. ....+..+.+|...|..++|+++...+++.+.||+++|||++-.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 9999999998 8889999874322 22355678899999999999999999999999999999998532
Q ss_pred eEE-----EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 806 KTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 806 ~~~-----~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
+++ .+....+....++++|.|..||.+. ...+++|
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 122 1222334455899999999887654 3345543
No 157
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=5.7e-19 Score=188.52 Aligned_cols=252 Identities=18% Similarity=0.268 Sum_probs=188.0
Q ss_pred cCCCceEEeccCCCceEEeec--CCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcE
Q 003177 508 TDMDRFVDDGSLDDNVESFLS--PDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKA 584 (842)
Q Consensus 508 ~~~~~~l~~Gs~d~~v~~~~s--~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpd-g~~Lasgs~Dg~I 584 (842)
.+..+++|.|.+|..|++|+. .+...+.-.+++...-.+...-..-..-.+|++.|.+++|+.+ ...||+|+.|.+|
T Consensus 189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence 456679999999999999943 2333333333322111111111112234579999999999875 4589999999999
Q ss_pred EEEecCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEE
Q 003177 585 VLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 663 (842)
Q Consensus 585 ~vwd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llas 663 (842)
++||+.++++..++..|...|.++.|+|. ..+|++|+.|++|.+.|++.....-..+ ...+.|-.++|.|...+.+++
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEE
Confidence 99999999999999999999999999994 7789999999999999999644322222 356789999999999999999
Q ss_pred EeCCCcEEEEECCCC-ceeeEEe-ecCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEE--eCCCCCEEEEEEc
Q 003177 664 CDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWN 738 (842)
Q Consensus 664 gs~Dg~I~vwDl~t~-~~i~~~~-~~~~i~~v~~sp~g-~~l~~~s~dg~I~IwDl~t~~~~~~l--~~h~~~V~sl~~s 738 (842)
+..||+|+-+|++.. +++.++. |..+|.+++++... +.+++++.|+.|++|++....+.... .-.-+...|.++.
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD 427 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccC
Confidence 999999999999975 8888777 46789999998754 55778889999999998754332111 1112346677888
Q ss_pred CCCCEE-EEEe-CCeEEEEEcCCC
Q 003177 739 TSGEYL-ASVS-DELVRVWSIGSG 760 (842)
Q Consensus 739 pdg~~L-asgs-Dg~I~IwDl~s~ 760 (842)
|+-.++ +.|+ .+.++|||+.+.
T Consensus 428 ~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 428 PDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CCcceEEEecCccceEEEeecccC
Confidence 876544 4455 668999999876
No 158
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.4e-18 Score=178.01 Aligned_cols=273 Identities=15% Similarity=0.250 Sum_probs=205.2
Q ss_pred cccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 003177 506 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 585 (842)
Q Consensus 506 ~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~ 585 (842)
+|.....+++.|+.++.|-+|+.... ..-+++.+|..+|+|++||+||+.|+|++.|..|.
T Consensus 30 ~Fs~~G~~lAvGc~nG~vvI~D~~T~-------------------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~ 90 (405)
T KOG1273|consen 30 QFSRWGDYLAVGCANGRVVIYDFDTF-------------------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIK 90 (405)
T ss_pred EeccCcceeeeeccCCcEEEEEcccc-------------------chhhhhhccccceeEEEecCCCCEeeeecCCceeE
Confidence 34556689999999999999955332 23466789999999999999999999999999999
Q ss_pred EEecCCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeeEeec---CccceEEEEEcCCCCcEE
Q 003177 586 LWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLL 661 (842)
Q Consensus 586 vwd~~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~t~~~~i~~~~~---h~~~V~sl~fspdg~~ll 661 (842)
+||+..|.++..+. ...+|+.+.|+|.. +.++++-.+..-.+-++..+...+..... -.....+..|.+.|+ ++
T Consensus 91 lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yI 168 (405)
T KOG1273|consen 91 LWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YI 168 (405)
T ss_pred EEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EE
Confidence 99999999998885 67899999999953 33333334444555555543221111110 111223345778777 55
Q ss_pred EEEeCCCcEEEEECCCCceeeEEeec--CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-------eE--EEEEeC--C
Q 003177 662 CSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVETQ-------VC--RLKLQG--H 728 (842)
Q Consensus 662 asgs~Dg~I~vwDl~t~~~i~~~~~~--~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~-------~~--~~~l~~--h 728 (842)
++|...|.+.++|..+-+|+..++.. ..|..+.++-.+..|+.-+.|..|+.|+++.- ++ ..++.. .
T Consensus 169 itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN 248 (405)
T KOG1273|consen 169 ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN 248 (405)
T ss_pred EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence 58999999999999999999888764 46889999999999999999999999998731 11 111111 1
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 729 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 729 ~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~-~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
+..=.+++|+.+|.|+++++ -..++||....| ..++.+.+.. .....+.|+|-...|++. ..|.|+||...
T Consensus 249 k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 249 KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred hhhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 22335789999999999988 558999999888 6777777766 667889999998877776 77899999864
No 159
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=7.3e-19 Score=192.83 Aligned_cols=243 Identities=19% Similarity=0.265 Sum_probs=199.4
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEE
Q 003177 594 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 673 (842)
Q Consensus 594 ~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vw 673 (842)
+-..+.+|++.|.||...|.|.+|++|+.||+|+||.+.++.+ ++++. ..+.|.||+|+|.+..-+++...+..+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-EEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 3456789999999999999999999999999999999999875 55554 456899999999876544444444444444
Q ss_pred ECCCC--------------------------------------ceeeEEeecCCeeEEEEeCCCCEEEEEEcC---CeEE
Q 003177 674 SINNG--------------------------------------SCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYIS 712 (842)
Q Consensus 674 Dl~t~--------------------------------------~~i~~~~~~~~i~~v~~sp~g~~l~~~s~d---g~I~ 712 (842)
+..-| ....++.+...|..+.|+..|.+|++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32211 012345566779999999999999998875 4799
Q ss_pred EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003177 713 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 792 (842)
Q Consensus 713 IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs 792 (842)
|+++........|....+.|.++.|+|...+|++++-..|+|||+... ..+..+......|..++++|.|..|++++
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 999988776666766778899999999999999999999999999876 56666666777899999999999999999
Q ss_pred cCCeEEEEECCCCeE-E-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 793 CYETLELWNMTENKT-L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 793 ~dg~I~Iwdl~~~~~-~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
.|+.+..||+.-... . ++..|...|++|+|++.-.++++|+.||+|.||
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 999999999976533 3 788999999999999999999999999999886
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=1.2e-18 Score=182.43 Aligned_cols=241 Identities=22% Similarity=0.338 Sum_probs=189.2
Q ss_pred ccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCC---------------CCceeeEeecCccceEEEEEcCCCCcEE
Q 003177 599 EEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTEN---------------PDYSLRTFTGHSTTVMSLDFHPSKEDLL 661 (842)
Q Consensus 599 ~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~t---------------~~~~i~~~~~h~~~V~sl~fspdg~~ll 661 (842)
..|.+.|+.+.-.+- ..+.++-+..|.|.||++.. ...++.++.+|...=+.|+|+|-..-.+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 357777777777664 45666667789999999852 1235778889999999999999665567
Q ss_pred EEEeCCCcEEEEECCCCceee----EEeecCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCC---eEEEEEeCCCCCEE
Q 003177 662 CSCDNNSEIRYWSINNGSCAG----VFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 733 (842)
Q Consensus 662 asgs~Dg~I~vwDl~t~~~i~----~~~~~~~i~~v~~sp~g-~~l~~~s~dg~I~IwDl~t~---~~~~~l~~h~~~V~ 733 (842)
++|+.-+.|++|...++.-.. ...+...|..++|+|.. +.|++|+.||+|+|||++.+ .++. .+.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCcee
Confidence 788888999999998865322 22245678999999964 55778889999999999987 3443 378999999
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE----
Q 003177 734 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT---- 807 (842)
Q Consensus 734 sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg-~~L~sgs~dg~I~Iwdl~~~~~---- 807 (842)
.|.|+.+-.+|++|+ ||+++|||++......++..++-|..+|+++.|+|.. ..|++++.|..|.|||+.-..-
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999888999999 9999999999988778999999999999999999965 5678888899999999853221
Q ss_pred -------------EEEccC--CCCeeEEEEeCCC-CEEEEEeCCCcEEEc
Q 003177 808 -------------LTLSAH--DKLVSSLAASTVN-GMVASASHDKCVKIW 841 (842)
Q Consensus 808 -------------~~~~~h--~~~V~sla~spdg-~~Lasgs~DG~V~IW 841 (842)
..+.-| ...|..+.|++.- .+|++.+.|| +.||
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 022234 4568889999864 4888888898 4444
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=2.3e-18 Score=185.09 Aligned_cols=219 Identities=17% Similarity=0.257 Sum_probs=184.5
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEee
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 642 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~ 642 (842)
-+|++......|+++|+..+.|+|||+....+.+.+++|...|+++.++....|||+++..|.|.|..+.++.. ...+.
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f~ 160 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTFT 160 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-cccee
Confidence 44555544558999999999999999998778888999999999999999999999999999999999998654 33444
Q ss_pred cC-ccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe--ecCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCC
Q 003177 643 GH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRL-GRILAAAIENYISILDVET 718 (842)
Q Consensus 643 ~h-~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~~v~~sp~g-~~l~~~s~dg~I~IwDl~t 718 (842)
.. ...|.-+.|++..+.+|.+++++|.|.+||+.....+..+. |..+...|+|+|.. ..|++.+.|..|++||.+.
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 33 45567999999999999999999999999999777665554 45678889999964 4567888999999999998
Q ss_pred CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003177 719 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 785 (842)
Q Consensus 719 ~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg 785 (842)
......+. ...+...++|.++|.+|++|. .|.|+.||++... .++..+..|...|++++|-+.-
T Consensus 241 ~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 241 QASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEEEeeecc
Confidence 76666554 456889999999999999999 9999999999764 6788888899999999998764
No 162
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=5e-19 Score=177.71 Aligned_cols=285 Identities=19% Similarity=0.200 Sum_probs=203.6
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 552 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
.+.++++|.+.|+|+.|-.+++ |.+|...|.|++|++.+.+.+..++ .|...|+.+...|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4678889999999999998774 8889999999999999988888887 67889999999987 5788899999999999
Q ss_pred cCCCCceeeEeecCccceEEEEEcCCC-----C---cEEEEEeCCC-cEEEEECCCCceeeEEee-----cCCeeEEEEe
Q 003177 631 TENPDYSLRTFTGHSTTVMSLDFHPSK-----E---DLLCSCDNNS-EIRYWSINNGSCAGVFKC-----QSGATQMRFQ 696 (842)
Q Consensus 631 l~t~~~~i~~~~~h~~~V~sl~fspdg-----~---~llasgs~Dg-~I~vwDl~t~~~i~~~~~-----~~~i~~v~~s 696 (842)
+..... ...|+-.++++.|++.. + .+++.-+... .+.+-|......+..... .+.+.+..+.
T Consensus 84 ia~s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 84 IAYSAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred ccCcce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 986433 22344555666665421 1 1111111000 111122211111111111 1234555433
Q ss_pred C-CCC--EEEEEEcCCeEEEEECCCCeEE----------EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC-
Q 003177 697 P-RLG--RILAAAIENYISILDVETQVCR----------LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS- 761 (842)
Q Consensus 697 p-~g~--~l~~~s~dg~I~IwDl~t~~~~----------~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~- 761 (842)
. .+. .+++|.++|.+.+||+.++..+ .....|..+|.++.|.+.-..=++++ +..+..|++....
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 2 222 2556667899999999997333 33446889999999987544445555 7789999886542
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 762 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 762 ~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
....-.++......|..+.+-||++.+++++.|+.|+||+.++...+ .+.-|.+.|++++|+|+..++|+++.|++|.+
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 11222233444667889999999999999999999999999999988 67789999999999999999999999999999
Q ss_pred cC
Q 003177 841 WK 842 (842)
Q Consensus 841 Wd 842 (842)
|+
T Consensus 320 Wk 321 (323)
T KOG0322|consen 320 WK 321 (323)
T ss_pred ee
Confidence 96
No 163
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=5.5e-18 Score=186.12 Aligned_cols=114 Identities=24% Similarity=0.405 Sum_probs=98.4
Q ss_pred CCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEE
Q 003177 729 KNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWN 801 (842)
Q Consensus 729 ~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~sv~~spdg-~~L~sgs~dg~I~Iwd 801 (842)
...|+.+.|+| |...|++++ ||.|++|.+..+.. ...-..+..|...|+++.|+|-. ..|++++.|-+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 45789999999 566777777 99999999987543 23455678899999999999954 5788889999999999
Q ss_pred CCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 802 MTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 802 l~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+.+.+.. .+.+|.+.|.+++|+|||+.+|+.+.||+|+||+
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 9998877 8999999999999999999999999999999985
No 164
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=6e-18 Score=177.09 Aligned_cols=283 Identities=16% Similarity=0.215 Sum_probs=211.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC------CeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 003177 554 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTV 626 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t------~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I 626 (842)
+.+.+|.+.|.++.||.++.+||+|+.|..++||+++. .+++.... .|...|.|++|.....+|++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 45679999999999999999999999999999999763 34444443 455899999999999999999999999
Q ss_pred EEEEcCCCCceeeEeecCc---cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc----eeeEEeecCCeeEEEEeCCC
Q 003177 627 RVWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKCQSGATQMRFQPRL 699 (842)
Q Consensus 627 ~IWDl~t~~~~i~~~~~h~---~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~----~i~~~~~~~~i~~v~~sp~g 699 (842)
.+.|+++... +..+ .|. +.|+.+..+|. .++|++.+.++.|.+||++... .+..-........+.|+|..
T Consensus 130 I~HDiEt~qs-i~V~-~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 130 IKHDIETKQS-IYVA-NENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred Eeeeccccee-eeee-cccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 9999998653 3333 343 58999999999 5577788999999999998654 22222335667889999966
Q ss_pred CE-EEEEEcCCeEEEEECCCCe-EEEEEeC---C---CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee
Q 003177 700 GR-ILAAAIENYISILDVETQV-CRLKLQG---H---KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 770 (842)
Q Consensus 700 ~~-l~~~s~dg~I~IwDl~t~~-~~~~l~~---h---~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~ 770 (842)
.. |++.+..+.+.+||.+... ++....+ - ...-.++.|+|+|..|.+-- ...-.+||+.+.. ..+..+.
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R--~~V~k~D 284 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR--CFVLKSD 284 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc--ceeEecc
Confidence 54 5566677999999998652 2222211 1 12235788999999888776 4456678877642 1222222
Q ss_pred cC------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC------------------------CeEEEEccCCCCeeEE
Q 003177 771 CT------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE------------------------NKTLTLSAHDKLVSSL 820 (842)
Q Consensus 771 ~~------~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~------------------------~~~~~~~~h~~~V~sl 820 (842)
.. ...+.+|+|..+.. +++|+.+=.|++|.+.. +....+.+|...++.+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 11 13456778877765 78888887999998742 1223678999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEcC
Q 003177 821 AASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 821 a~spdg~~Lasgs~DG~V~IWd 842 (842)
.|++...+|++.+..+.++||.
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eecCCcceEeccchhhheeccc
Confidence 9999999999999999999993
No 165
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=1.1e-16 Score=177.17 Aligned_cols=266 Identities=10% Similarity=0.184 Sum_probs=183.6
Q ss_pred EEEEECCCcEEEEecCC-Ce--EEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCC-CceeeEeecCccceE
Q 003177 575 LATGGHDKKAVLWCTES-FT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENP-DYSLRTFTGHSTTVM 649 (842)
Q Consensus 575 Lasgs~Dg~I~vwd~~t-~~--~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~t~-~~~i~~~~~h~~~V~ 649 (842)
+++...++.|.+|++.+ ++ .+..+. +.+.+..++++|++++|++++ .++.|.+|+++.. ...............
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 34446789999999964 33 445554 345678899999999987765 4788999999732 221111112334567
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCC-Cc---eeeEEeecCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEE-
Q 003177 650 SLDFHPSKEDLLCSCDNNSEIRYWSINN-GS---CAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL- 723 (842)
Q Consensus 650 sl~fspdg~~llasgs~Dg~I~vwDl~t-~~---~i~~~~~~~~i~~v~~sp~g~~l~~~s~-dg~I~IwDl~t~~~~~- 723 (842)
.++|+|+++.++++...++.|.+|++.+ +. .+..+........++++|+++++++++. ++.|.+||+.+...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 8999999998887777799999999974 32 2223333345778899999999877665 5999999998632221
Q ss_pred ------EEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecC------CCceEEEEEeCCCCEE
Q 003177 724 ------KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT------GNKFHSCVFHPTFPSL 788 (842)
Q Consensus 724 ------~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~------~~~I~sv~~spdg~~L 788 (842)
... .......++|+|+|++++++. ++.|.+|++... ...+.+..+... ......+.++|+++++
T Consensus 164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 111 233467899999999998877 789999999742 122334333221 1123358899999999
Q ss_pred EEEEc-CCeEEEEECCCCe-EEEEccC---CCCeeEEEEeCCCCEEEEEeC-CCcEEEcC
Q 003177 789 LVIGC-YETLELWNMTENK-TLTLSAH---DKLVSSLAASTVNGMVASASH-DKCVKIWK 842 (842)
Q Consensus 789 ~sgs~-dg~I~Iwdl~~~~-~~~~~~h---~~~V~sla~spdg~~Lasgs~-DG~V~IWd 842 (842)
+++.. ++.|.+|++.... ...+..+ ......+.|+|||++|++++. +++|.||+
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 99865 5799999985432 2222222 235678999999999988775 88999984
No 166
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=4.6e-16 Score=172.18 Aligned_cols=288 Identities=11% Similarity=0.122 Sum_probs=193.6
Q ss_pred EeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEecC-CC
Q 003177 515 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE-SF 592 (842)
Q Consensus 515 ~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs-~Dg~I~vwd~~-t~ 592 (842)
.+...++.|.+|..... + .+..+..+. +.+....++++|++++|++++ .++.|.+|++. ++
T Consensus 6 ~~~~~~~~I~~~~~~~~--g--------------~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g 68 (330)
T PRK11028 6 IASPESQQIHVWNLNHE--G--------------ALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG 68 (330)
T ss_pred EEcCCCCCEEEEEECCC--C--------------ceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC
Confidence 33456788888865321 1 122334443 234577899999999987765 47889999986 33
Q ss_pred eE--EEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCc---eeeEeecCccceEEEEEcCCCCcEEEEEeC
Q 003177 593 TV--KSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 666 (842)
Q Consensus 593 ~~--~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~t~~~---~i~~~~~h~~~V~sl~fspdg~~llasgs~ 666 (842)
+. +.... .......++|+|++++|++++. ++.|.+|++++... .+..+. +.....+++++|+++.++++...
T Consensus 69 ~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~ 146 (330)
T PRK11028 69 ALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLK 146 (330)
T ss_pred ceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCC
Confidence 32 23222 3345778999999999988875 88999999975332 122222 33456788999999988888888
Q ss_pred CCcEEEEECCCCceee-------EEeecCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCC--C--eEEEEEeCC------
Q 003177 667 NSEIRYWSINNGSCAG-------VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET--Q--VCRLKLQGH------ 728 (842)
Q Consensus 667 Dg~I~vwDl~t~~~i~-------~~~~~~~i~~v~~sp~g~~l~~~s~-dg~I~IwDl~t--~--~~~~~l~~h------ 728 (842)
++.|.+||+.+...+. .+........+.|+|++++++++.. ++.|.+||++. + +.+..+..+
T Consensus 147 ~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 147 EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD 226 (330)
T ss_pred CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence 8999999998633221 1223455778999999999988877 89999999973 2 333333322
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC-CceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC-
Q 003177 729 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT- 803 (842)
Q Consensus 729 ~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~-~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~-dg~I~Iwdl~- 803 (842)
......+.++|++++++++. ++.|.+|++.... ....+..... ......+.++|+|++|+++.. +++|.+|+++
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 12234688999999999886 7799999996542 1123333332 234567899999999998886 7799999874
Q ss_pred -CCeEEE--EccCCCCeeEEEE
Q 003177 804 -ENKTLT--LSAHDKLVSSLAA 822 (842)
Q Consensus 804 -~~~~~~--~~~h~~~V~sla~ 822 (842)
++.+.. .........+++|
T Consensus 306 ~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 306 ETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred CCCcEEEccccccCCCceEEEE
Confidence 444331 1122444555555
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.8e-18 Score=177.05 Aligned_cols=266 Identities=16% Similarity=0.297 Sum_probs=192.6
Q ss_pred CEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCc-eeeEeecCc-cce
Q 003177 573 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDY-SLRTFTGHS-TTV 648 (842)
Q Consensus 573 ~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~t~~~-~i~~~~~h~-~~V 648 (842)
..+|++...|.|++||..++..+..++++...++.++|.. ....+.+|+.||+|++||++.... ....+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5788999999999999999999999999999999999987 467799999999999999987554 334455555 456
Q ss_pred EEEEEcCCCCcEEEEEe----CCCcEEEEECCCCce-eeEEe--ecCCeeEEEEeCC-CCEEEEEEcCCeEEEEECCCCe
Q 003177 649 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVFK--CQSGATQMRFQPR-LGRILAAAIENYISILDVETQV 720 (842)
Q Consensus 649 ~sl~fspdg~~llasgs----~Dg~I~vwDl~t~~~-i~~~~--~~~~i~~v~~sp~-g~~l~~~s~dg~I~IwDl~t~~ 720 (842)
.|++..-. ..++++|. .+-.|.+||++..+. +..+. |...|++++|+|. -+.|++|+.||.|.+||++...
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 66666544 44776664 467899999998765 55443 5788999999995 4678899999999999998652
Q ss_pred ---EEEEEeCCCCCEEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCceeEEEeecC------------CCceEEEEEeC
Q 003177 721 ---CRLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHP 783 (842)
Q Consensus 721 ---~~~~l~~h~~~V~sl~~spdg--~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~------------~~~I~sv~~sp 783 (842)
.+.....|...|.++.|..++ ++.+....++..+|++..+.. ...+... ...+..+....
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~---~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE---ETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh---hhcccCccchhhhHHhhhhhhheeecccCC
Confidence 223333477889999999888 544444499999999988742 2221111 11122222233
Q ss_pred CCCEEEEEEc-CCeEEEEECC---CCeEE----EEc-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 784 TFPSLLVIGC-YETLELWNMT---ENKTL----TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 784 dg~~L~sgs~-dg~I~Iwdl~---~~~~~----~~~-~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+...+++++. .+...++-+. ++... .+. +|...|.++.|.-.+.++.||++||.|.+|+
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 4445555544 5555555433 33322 344 4778899999998899999999999999995
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=1.9e-17 Score=174.31 Aligned_cols=228 Identities=14% Similarity=0.261 Sum_probs=185.6
Q ss_pred EeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCC------ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCc
Q 003177 597 TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 669 (842)
Q Consensus 597 ~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~t~~------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 669 (842)
.+.+|+++|..++|+| +...||+||.|.+|.||.+..+. .++..+.+|...|--+.|+|.-.++|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3568999999999999 56789999999999999986543 3577899999999999999999999999999999
Q ss_pred EEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe
Q 003177 670 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS 748 (842)
Q Consensus 670 I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~-~V~sl~~spdg~~Lasgs 748 (842)
|.+||+.+++.+..+.+..-|.++.|+.+|..+++++.|..|+|||.++++.+..-.+|.+ .-..+.|-.+|.++.+|.
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf 235 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF 235 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999999999999988877876 344567778898666664
Q ss_pred ----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEE----EEccCCCCeeE
Q 003177 749 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTL----TLSAHDKLVSS 819 (842)
Q Consensus 749 ----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs-~dg~I~Iwdl~~~~~~----~~~~h~~~V~s 819 (842)
+..+-+||-......-.+.++.. .+.|.--.|.+|...|+.++ .|+.|+.|.+.+.... .......+-..
T Consensus 236 sr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG 314 (472)
T KOG0303|consen 236 SRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRG 314 (472)
T ss_pred ccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccc
Confidence 66899999887765555555553 55677778899988777665 5789999999887643 12223334444
Q ss_pred EEEeCC
Q 003177 820 LAASTV 825 (842)
Q Consensus 820 la~spd 825 (842)
+.|-|.
T Consensus 315 ~g~mPK 320 (472)
T KOG0303|consen 315 MGFMPK 320 (472)
T ss_pred cccccc
Confidence 555443
No 169
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.5e-18 Score=188.40 Aligned_cols=254 Identities=19% Similarity=0.283 Sum_probs=197.8
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC--------CCeEEEEeccCCCCeEEEEEcCCCCEEEEEe
Q 003177 550 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------SFTVKSTLEEHTQWITDVRFSPSLSRLATSS 621 (842)
Q Consensus 550 ~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~--------t~~~~~~l~~h~~~I~~l~fspdg~~Latgs 621 (842)
|..-.++..|.+.|+.+.|.+-...|++++.||+|.+|++. ..+.+.+|.+|.++|.|+++.+++..+++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 33444889999999999999999999999999999999982 2456788999999999999999999999999
Q ss_pred CCCeEEEEEcCC---------CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee---cCC
Q 003177 622 ADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSG 689 (842)
Q Consensus 622 ~Dg~I~IWDl~t---------~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~ 689 (842)
.||+|++|++.. .......+.||.+.|+.++++..... |++|+.||+|+.|+...... .+|.. .+-
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 999999996542 11334578899999999999998665 55999999999999876655 33322 222
Q ss_pred eeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEeC-------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003177 690 ATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 760 (842)
Q Consensus 690 i~~v~~sp~g-~~l~~~s~dg~I~IwDl~t~~~~~~l~~-------h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 760 (842)
..++.+.... ...++...-+.-.+++.+....+..+.. ....+.-+.+.|...+.+++. |+.|+++|..++
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 3444444332 2233333334444555555444433332 123567788999999888888 999999999998
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 761 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 761 ~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
..++....|...++++++.|+|.+|++++.|+.|++|.+....++
T Consensus 522 ---~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 522 ---KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ---ccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 788899999999999999999999999999999999999777665
No 170
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=1.4e-18 Score=196.21 Aligned_cols=275 Identities=18% Similarity=0.292 Sum_probs=218.4
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 551 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
..++.|.+|.+.|+|+.|...|.+|++|+.|..|+||.+++..++..+.+|.+.|+.++.+.+..+++++|.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceee-----EEeecCCeeEEEEeCCCCEEEEE
Q 003177 631 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAA 705 (842)
Q Consensus 631 l~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~-----~~~~~~~i~~v~~sp~g~~l~~~ 705 (842)
+.++. ++..+.+|++.|++|+|+|-- +.+.||++++||.+-.-.+. .+.....+.++.|...+..++++
T Consensus 261 l~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 261 LPDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred cCCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 99865 588899999999999999863 67889999999998211111 12223456777788888889999
Q ss_pred EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003177 706 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 783 (842)
Q Consensus 706 s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~sp 783 (842)
+.|+.-..|...-.. .+...+.-+.++.+- .+.++.- +-.+++|++.++ ...+.+.+|...+..+.+||
T Consensus 335 s~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred cCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeecC
Confidence 999887777654321 122222222232232 2334443 889999999988 77888889999999999999
Q ss_pred CCCEEE-EEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 784 TFPSLL-VIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 784 dg~~L~-sgs~dg~I~Iwdl~~~~~~--~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
-...++ .++.||.+.|||+-.|..+ ...+| +.+...+|++||..++....-|.++|.
T Consensus 406 fn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence 876554 6788999999999988776 34454 556677999999988888777887764
No 171
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.5e-17 Score=182.42 Aligned_cols=254 Identities=19% Similarity=0.195 Sum_probs=193.1
Q ss_pred CCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCc
Q 003177 504 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 583 (842)
Q Consensus 504 ~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~ 583 (842)
.-.+...+..+++++.|+.+++|..... ...+...+..+.++++|.++|.|+++.+++..+++|+.||+
T Consensus 299 ~l~~~~sep~lit~sed~~lk~WnLqk~-----------~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 299 ALAFHPSEPVLITASEDGTLKLWNLQKA-----------KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred hhhcCCCCCeEEEeccccchhhhhhccc-----------CCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 4455677889999999999999976331 12345667889999999999999999999999999999999
Q ss_pred EEEEecCC----------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEE
Q 003177 584 AVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 653 (842)
Q Consensus 584 I~vwd~~t----------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~f 653 (842)
|+.|++.. .....++.+|.+.|+.++++.....|++++.||+|++|+......+........+.-.++++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence 99996531 12346678999999999999999999999999999999987654322212222234456666
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCceeeEEee--------cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003177 654 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 725 (842)
Q Consensus 654 spdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--------~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l 725 (842)
-.....+.++...-+.--+++++....+..+.. ...+..+.++|.....+++..|+.|+++|..+++.+...
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence 544322333333333334444444444444432 134778899999999999999999999999999999999
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003177 726 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 771 (842)
Q Consensus 726 ~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 771 (842)
..|...++++++.|+|-+|.+++ |+.|++|.+... .|+.....
T Consensus 528 ~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k---~~~~es~~ 571 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK---TCVLESTA 571 (577)
T ss_pred eeccceecceeecCCCceEEeecCCceeehhhccch---heeecccc
Confidence 99999999999999999999999 999999998765 45544433
No 172
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=7.8e-16 Score=157.92 Aligned_cols=249 Identities=21% Similarity=0.372 Sum_probs=186.2
Q ss_pred ccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcE
Q 003177 507 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKA 584 (842)
Q Consensus 507 l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSp--dg~~Lasgs~Dg~I 584 (842)
++...+.+++++.|.++++|.+.++ ..++..-...+.|.+.|..|.|-+ -|..+|+++.|++|
T Consensus 21 ~D~~GRRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 21 FDFYGRRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred ecccCceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 4556688999999999999987443 234556677889999999999976 58899999999999
Q ss_pred EEEecC---------CCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCce------------eeEe
Q 003177 585 VLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYS------------LRTF 641 (842)
Q Consensus 585 ~vwd~~---------t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~t~~~~------------i~~~ 641 (842)
.||.-. ......++......|++|+|.|. |-.||+++.||.||||+.-+.... +...
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 999641 12344667778889999999995 788999999999999987653321 1112
Q ss_pred ecCccceEEEEEcCCC--CcEEEEEeCC-----CcEEEEECCCC--ceeeE--E-eecCCeeEEEEeCCCC----EEEEE
Q 003177 642 TGHSTTVMSLDFHPSK--EDLLCSCDNN-----SEIRYWSINNG--SCAGV--F-KCQSGATQMRFQPRLG----RILAA 705 (842)
Q Consensus 642 ~~h~~~V~sl~fspdg--~~llasgs~D-----g~I~vwDl~t~--~~i~~--~-~~~~~i~~v~~sp~g~----~l~~~ 705 (842)
..+.....|+.|+|.. ..+|+.|+.+ +.++||....+ +.... + .+..+|+.++|.|.-+ .|+++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 2466778899999752 3467677654 47888876543 22222 2 3467899999999643 47788
Q ss_pred EcCCeEEEEECCCC--------------------eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003177 706 AIENYISILDVETQ--------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 764 (842)
Q Consensus 706 s~dg~I~IwDl~t~--------------------~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 764 (842)
+.|| |+||.++.. +.+..+.+|.+.|..+.|+-.|..|++.+ ||+|++|...-....+
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~k 324 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWK 324 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhhe
Confidence 8899 999998731 23445678999999999999999999988 9999999876555556
Q ss_pred eEEEeec
Q 003177 765 CIHELSC 771 (842)
Q Consensus 765 ~i~~~~~ 771 (842)
|+..+..
T Consensus 325 C~sv~~~ 331 (361)
T KOG2445|consen 325 CTSVLKA 331 (361)
T ss_pred eeeEEec
Confidence 6666554
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.75 E-value=2.4e-16 Score=162.44 Aligned_cols=273 Identities=18% Similarity=0.244 Sum_probs=201.3
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecC-CCCCeEEEEEc-------CCCCEEEEEECCCc
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFS-------PDGKLLATGGHDKK 583 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~g-H~~~V~sv~fS-------pdg~~Lasgs~Dg~ 583 (842)
..+.+-+.|..+.+|..+.+.-..+.- -...+....+++- ....|...+|- |+..++|+.+.|.-
T Consensus 62 SciL~~sedn~l~~~nlP~dlys~~~~-------~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 62 SCILSLSEDNCLNCWNLPFDLYSKKAD-------GPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP 134 (406)
T ss_pred ceEEeecccCeeeEEecChhhcccCCC-------CccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence 455666788889999665543222211 1111222222221 23457888886 57789999999999
Q ss_pred EEEEecCCCeEEEEecc--CCCC---eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeeEe-----ecCccceEEE
Q 003177 584 AVLWCTESFTVKSTLEE--HTQW---ITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTF-----TGHSTTVMSL 651 (842)
Q Consensus 584 I~vwd~~t~~~~~~l~~--h~~~---I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~--~i~~~-----~~h~~~V~sl 651 (842)
|.+||.-+|+....+.. |-+. ..+++|+|||..|+.| ....|+|||+..+.. .+... .+..+-|.|+
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~ 213 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCF 213 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeee
Confidence 99999999998877653 4333 4689999999999887 677999999954332 12222 2336789999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCC-eEEEEEeCC
Q 003177 652 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ-VCRLKLQGH 728 (842)
Q Consensus 652 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~-dg~I~IwDl~t~-~~~~~l~~h 728 (842)
+|+|.....++.++....+-||.-....++..+. +.++|+.++|.++|+.|++|+. +..|..||++.. .++..+..|
T Consensus 214 a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rh 293 (406)
T KOG2919|consen 214 AFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERH 293 (406)
T ss_pred eccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhh
Confidence 9999988899999999999999888887777665 4678999999999999999986 689999999964 667777777
Q ss_pred CC-CEE--EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003177 729 KN-QVH--SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 794 (842)
Q Consensus 729 ~~-~V~--sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d 794 (842)
.. .-- -....|++++|++|+ ||.|++||+.+.. ..+..+..+...++.++++|--..+++++..
T Consensus 294 v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 294 VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--CcccccccccccccceecCcccceeeeccCc
Confidence 65 222 345568999999998 9999999998732 4566677788899999999997766655544
No 174
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=6e-18 Score=182.24 Aligned_cols=292 Identities=20% Similarity=0.316 Sum_probs=228.5
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEe-ccCCCCeEEEEEcC--CCCEEEEEeCCCeE
Q 003177 550 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTV 626 (842)
Q Consensus 550 ~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l-~~h~~~I~~l~fsp--dg~~Latgs~Dg~I 626 (842)
+.....|..|.+.|..|.|+..|..|++|+.|..|.+||...+..+..+ .+|...|.-..|.| +...|++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 4456678899999999999999999999999999999999988877666 57999999888988 45679999999999
Q ss_pred EEEEcCCCCce--eeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee----cC---CeeEEEEeC
Q 003177 627 RVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QS---GATQMRFQP 697 (842)
Q Consensus 627 ~IWDl~t~~~~--i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~----~~---~i~~v~~sp 697 (842)
++=.+...+++ ...+..|.+.|..++.-|+..+-|.+|+.|+.+.-+|++.+.....+.+ .. ....++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 99887654443 3456679999999999999999999999999999999998776555543 12 367788888
Q ss_pred CCC-EEEEEEcCCeEEEEECCCCeE------EEEEe------CCCCCEEEEEEcCCC-CEEEEEeCCeEEEEEcCCCCC-
Q 003177 698 RLG-RILAAAIENYISILDVETQVC------RLKLQ------GHKNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSK- 762 (842)
Q Consensus 698 ~g~-~l~~~s~dg~I~IwDl~t~~~------~~~l~------~h~~~V~sl~~spdg-~~LasgsDg~I~IwDl~s~~~- 762 (842)
... .+++++.|-.+++||.+.-.. +..+. ...-.|+|++|+.++ .+|++-.|..|++|.-..+.-
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 665 688889999999999875321 22222 223479999999655 566666699999995432211
Q ss_pred -c-------eeEEE-eecCCC--ceEEEE-EeCCCCEEEEEEcCCeEEEEECCCCeEEE-EccCCCCeeEEEEeCCCCEE
Q 003177 763 -G-------ECIHE-LSCTGN--KFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMV 829 (842)
Q Consensus 763 -~-------~~i~~-~~~~~~--~I~sv~-~spdg~~L~sgs~dg~I~Iwdl~~~~~~~-~~~h~~~V~sla~spdg~~L 829 (842)
. ..+.. +++|.+ .|..+- |-|...|+++|+.-|.|.||+-++++++. +.+-...|+||.-+|--.+|
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvL 451 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVL 451 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchh
Confidence 0 11222 555543 355554 57888999999999999999999999883 44444589999999999999
Q ss_pred EEEeCCCcEEEc
Q 003177 830 ASASHDKCVKIW 841 (842)
Q Consensus 830 asgs~DG~V~IW 841 (842)
|+++-|..|+||
T Consensus 452 AsSGid~DVKIW 463 (559)
T KOG1334|consen 452 ASSGIDHDVKIW 463 (559)
T ss_pred hccCCccceeee
Confidence 999999999999
No 175
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.3e-16 Score=182.37 Aligned_cols=280 Identities=16% Similarity=0.229 Sum_probs=208.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccC---CCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCC
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSP--SLSRLATSSADRTVRVWDTENP 634 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h---~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~t~ 634 (842)
...-..+.|+|=...++++...-.|+|||.+.++....|..+ ...|+.+++.. |..++++|+.||.|+||+--..
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 344567888888888999887789999999999998777644 35688888866 5678999999999999974322
Q ss_pred C----ceeeEeec-------CccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecC--CeeEEEEe-CCCC
Q 003177 635 D----YSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQ-PRLG 700 (842)
Q Consensus 635 ~----~~i~~~~~-------h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~--~i~~v~~s-p~g~ 700 (842)
. +.+..+.+ ..+.=.-++|.....+++++|+ -..|+|||.....++..+.... .++++.-+ ..|+
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 1 11222211 1111244677777776775554 7899999999888887776543 35555443 3468
Q ss_pred EEEEEEcCCeEEEEECCCC---eEEEEEeCCCCC--EEEEEEcCCCCE-EEEEe-CCeEEEEEcCCCCCceeEEEeecC-
Q 003177 701 RILAAAIENYISILDVETQ---VCRLKLQGHKNQ--VHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCT- 772 (842)
Q Consensus 701 ~l~~~s~dg~I~IwDl~t~---~~~~~l~~h~~~--V~sl~~spdg~~-Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~- 772 (842)
.+++|..||.|++||.+.. ..+...+.|... |..+.+-+.|-- |++++ ||.|++||++.... +....+..|
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLTIVAHW 1301 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccceeeecc
Confidence 8999999999999999865 346677778887 999999886654 88888 99999999998522 222222222
Q ss_pred --CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc-------CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 773 --GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 773 --~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~-------h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++..+++..|+..+.|++|+. +.|+||++....+..+.. ..+.+.|++|+|-.-+||+|+.|.+|.||.
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 335999999999998888888 999999998766543332 235689999999999999999999999983
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=1.4e-16 Score=167.90 Aligned_cols=207 Identities=19% Similarity=0.309 Sum_probs=166.4
Q ss_pred eEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEecCCC-------eEEEEeccCCCCeEEEEEcCC-CCEEEEEe
Q 003177 551 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSS 621 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fSp-dg~~Lasgs~Dg~I~vwd~~t~-------~~~~~l~~h~~~I~~l~fspd-g~~Latgs 621 (842)
..+-.+.||+++|..++|+| +...||+|+.|.+|.||.+... +.+..+.+|...|.-+.|+|. .+.|++++
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 34556789999999999999 5668999999999999998643 456778899999999999995 66899999
Q ss_pred CCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCC--eeEEEEeCCC
Q 003177 622 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRL 699 (842)
Q Consensus 622 ~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~--i~~v~~sp~g 699 (842)
.|.+|.+||+.+++. +.++. |..-|++++|+.+|. ++++.+.|..|+|||.++++.+..-..+.+ ...+.|..++
T Consensus 152 ~Dn~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred CCceEEEEeccCCce-eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence 999999999999875 34444 999999999999987 677999999999999999998887754333 4567788887
Q ss_pred CEEEEEEc---CCeEEEEECCCCeE---EEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC
Q 003177 700 GRILAAAI---ENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS 761 (842)
Q Consensus 700 ~~l~~~s~---dg~I~IwDl~t~~~---~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~ 761 (842)
..+-+|.. +..+-+||..+-+. ...+ ...+.|.---|++|..+|+.++ |+.|+.|.+....
T Consensus 229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQIALWDPNNLEEPIALQEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ceeeeccccccccceeccCcccccCcceeEEe-ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 74444433 57899999876432 2233 2556677778899999888877 9999999998753
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=1.5e-16 Score=161.59 Aligned_cols=271 Identities=20% Similarity=0.281 Sum_probs=191.7
Q ss_pred EEEecCCCCCeEEEEEcC-CCCEEEEEECC-------CcEEEEecCC---------CeEEEEec-cCCCCeEEEEEcCCC
Q 003177 553 FQLIPASTSKVESCHFSP-DGKLLATGGHD-------KKAVLWCTES---------FTVKSTLE-EHTQWITDVRFSPSL 614 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSp-dg~~Lasgs~D-------g~I~vwd~~t---------~~~~~~l~-~h~~~I~~l~fspdg 614 (842)
-.+|..|.+.|+.++-+| |.++|+++..+ ..+.||.+.. .+++..+. .+-+.|.||.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 456788999999999999 55667776542 3578998763 23344443 456789999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeEe-----ecCccceEEEEEcCC-CCcEEEEEeCCCcEEEEECCCCceeeEEee--
Q 003177 615 SRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-- 686 (842)
Q Consensus 615 ~~Latgs~Dg~I~IWDl~t~~~~i~~~-----~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vwDl~t~~~i~~~~~-- 686 (842)
..|++-. |..|.+|++......+..+ ..+....++-+|+|. ..+.+++. .|+++..||+++.++...+..
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhh
Confidence 9998875 8899999998766522222 235567788899993 23344343 489999999999888877763
Q ss_pred cCCeeEEEEeCCCCE-EEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCC
Q 003177 687 QSGATQMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSK 762 (842)
Q Consensus 687 ~~~i~~v~~sp~g~~-l~~~s~dg~I~IwDl~t~-~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~ 762 (842)
...+..+.|+|+..+ |++++.||.|+|||.+.. .++..+.+|...|.++.|+|.. .+|++++ |..|.+|-..+-..
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 445899999998776 556677899999999864 7888999999999999999954 4566666 99999997654321
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEeCCCcEEE
Q 003177 763 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKI 840 (842)
Q Consensus 763 ~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~-~Lasgs~DG~V~I 840 (842)
.. .+.|..+....-.......++ -+.+|.+.++..|+..|.+++|+.-.. +||+-+.||+|.|
T Consensus 294 E~-------------qi~~~~dese~e~~dseer~k--pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 294 EQ-------------QIEFEDDESESEDEDSEERVK--PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred cc-------------ccccccccccCcchhhHHhcc--cccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 11 111111110000000011222 345566668889999999999987655 6788899999876
No 178
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=4.8e-16 Score=158.23 Aligned_cols=241 Identities=19% Similarity=0.327 Sum_probs=179.5
Q ss_pred cCCCCCeEEEEEcCCCC-----EEEEEECCCcEEEEecCC--CeEE--EEe-----ccCCCCeEEEEEcC-CCCEEEEEe
Q 003177 557 PASTSKVESCHFSPDGK-----LLATGGHDKKAVLWCTES--FTVK--STL-----EEHTQWITDVRFSP-SLSRLATSS 621 (842)
Q Consensus 557 ~gH~~~V~sv~fSpdg~-----~Lasgs~Dg~I~vwd~~t--~~~~--~~l-----~~h~~~I~~l~fsp-dg~~Latgs 621 (842)
-.|.-+++.+.|.|+.+ +|||++ -.+++|.+.. .+.. ..+ ..+..++++..|+. +.++|.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 36888999999999763 576654 4799998873 2211 111 34677899999987 678999999
Q ss_pred CCCeEEEEEcCCC--CceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-e---cCCeeEEEE
Q 003177 622 ADRTVRVWDTENP--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-C---QSGATQMRF 695 (842)
Q Consensus 622 ~Dg~I~IWDl~t~--~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~---~~~i~~v~~ 695 (842)
-|-++.|||++++ ......+..|...|.+|+|...+..+|++++.||.|++||++..+-...+- . ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 9999999999985 224567888999999999999989999999999999999999765433332 2 345677888
Q ss_pred eCCCC-EEEEEEcC-CeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCC---ceeEE
Q 003177 696 QPRLG-RILAAAIE-NYISILDVETQ-VCRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSK---GECIH 767 (842)
Q Consensus 696 sp~g~-~l~~~s~d-g~I~IwDl~t~-~~~~~l~~h~~~V~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~---~~~i~ 767 (842)
++..- ++++...| ..|.|.|++.. .++..+.+|.+.|+.|+|.|. ...|++++ |..+.|||+..... ..++.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 87544 45554444 68999999975 788899999999999999996 46788888 78999999976422 11222
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003177 768 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 800 (842)
Q Consensus 768 ~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iw 800 (842)
.+. .+.+|..+.|++...--++.+.++++.|.
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 233 57889999999755434444444455443
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=1.8e-15 Score=173.93 Aligned_cols=258 Identities=18% Similarity=0.236 Sum_probs=188.8
Q ss_pred CcEEEEecCCC-eEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCce-----eeEeecCccceEEEEEc
Q 003177 582 KKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYS-----LRTFTGHSTTVMSLDFH 654 (842)
Q Consensus 582 g~I~vwd~~t~-~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~t~~~~-----i~~~~~h~~~V~sl~fs 654 (842)
+.+.||+++.. .....+ .-...|+|++|+| +..+++.|+.+|.|.+||+...... ......|..+|+.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999875 333444 3567899999999 5778888999999999999876542 12334688999999998
Q ss_pred CCCCc-EEEEEeCCCcEEEEECCCCcee------eEE-------eecCCeeEEEEeCC-CCEEEEEEcCCeEEEEECCC-
Q 003177 655 PSKED-LLCSCDNNSEIRYWSINNGSCA------GVF-------KCQSGATQMRFQPR-LGRILAAAIENYISILDVET- 718 (842)
Q Consensus 655 pdg~~-llasgs~Dg~I~vwDl~t~~~i------~~~-------~~~~~i~~v~~sp~-g~~l~~~s~dg~I~IwDl~t- 718 (842)
.+... =|++++.||.|..|+++.-... ... .....++++.|.+. -..+++|+.+|.|+.-+...
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 65433 2557788999999998754321 111 11345788999884 45688888999988733322
Q ss_pred --Ce-----EEEEEeCCCCCEEEEEEcCCCCEE-EEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE-E
Q 003177 719 --QV-----CRLKLQGHKNQVHSVCWNTSGEYL-ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL-L 789 (842)
Q Consensus 719 --~~-----~~~~l~~h~~~V~sl~~spdg~~L-asgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L-~ 789 (842)
.. ....+..|.++|+++.++|-+..+ .+++|.+|+||.-.... .++..+..+...+++++|||....+ +
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~--~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA--SPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC--CcchhhhhccceeeeeEEcCcCceEEE
Confidence 22 123455688999999999976544 44559999999977321 5666677777889999999988654 5
Q ss_pred EEEcCCeEEEEECCCCeE--E-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 790 VIGCYETLELWNMTENKT--L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 790 sgs~dg~I~Iwdl~~~~~--~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++..+|.|.|||+..... + +...+....+.+.|++.|++|++|+..|.|++|+
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 555699999999865432 2 4444566778889999999999999999999985
No 180
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=1.8e-15 Score=177.76 Aligned_cols=292 Identities=17% Similarity=0.215 Sum_probs=208.4
Q ss_pred eEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEecCC-------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 003177 551 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 622 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fSpdg-~~Lasgs~Dg~I~vwd~~t-------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~ 622 (842)
..+..+..|...|..++.+++. .++++|+.||+|++||... .+...++......+.++.+.+.+..+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4577888999999999998755 8999999999999999763 2233344445678999999999999999999
Q ss_pred CCeEEEEEcCCCCc------eeeEeecC--ccceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCceeeEEee---cCCe
Q 003177 623 DRTVRVWDTENPDY------SLRTFTGH--STTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGA 690 (842)
Q Consensus 623 Dg~I~IWDl~t~~~------~i~~~~~h--~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i 690 (842)
||.|++.+++.... ..+....+ ...|..-+|.... ..+++.+...+.|..||++.......++. ++-|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 99999999885211 11111111 2233334444332 33677788889999999998877766664 5679
Q ss_pred eEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEe-CCCCCEEEEEEcCC---CCEEEEEe---CCeEEEEEcCCCCCc
Q 003177 691 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTS---GEYLASVS---DELVRVWSIGSGSKG 763 (842)
Q Consensus 691 ~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~-~h~~~V~sl~~spd---g~~Lasgs---Dg~I~IwDl~s~~~~ 763 (842)
++++.+|.+.+++.|+..|.+.+||++-+.++..+. ++..+|..++.+|- ....++++ .+.|.+|++.++...
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 999999999999999999999999999888877665 34567887777663 34555444 568999999988332
Q ss_pred eeEEEe----------e------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-------------------
Q 003177 764 ECIHEL----------S------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL------------------- 808 (842)
Q Consensus 764 ~~i~~~----------~------~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~------------------- 808 (842)
..+..- . .+.-....+++...+.++++|+.|..|+.||....+..
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~ 1358 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD 1358 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc
Confidence 222111 0 01112334455556678999999999999997432111
Q ss_pred --------------------------------------EEccCCCCeeEEEEeCCC-CEEEEEeCCCcEEEcC
Q 003177 809 --------------------------------------TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 842 (842)
Q Consensus 809 --------------------------------------~~~~h~~~V~sla~spdg-~~Lasgs~DG~V~IWd 842 (842)
.-..|...|+++++.... .+|++++.||.|+||+
T Consensus 1359 ~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1359 LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 011255678888776543 5899999999999996
No 181
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.71 E-value=3.6e-16 Score=161.59 Aligned_cols=242 Identities=19% Similarity=0.284 Sum_probs=182.9
Q ss_pred CCCCCeEEEEEcCC----CCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcC
Q 003177 558 ASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 632 (842)
Q Consensus 558 gH~~~V~sv~fSpd----g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~ 632 (842)
.|......|+|+-| ..+||.|+.-|.|+|.|+.++++...+.+|...|+.|.|.|+ ..+|+++|.|.+|++|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 46777888888764 347999999999999999999999999999999999999996 4689999999999999999
Q ss_pred CCCceeeE---eecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe------------------------
Q 003177 633 NPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------------ 685 (842)
Q Consensus 633 t~~~~i~~---~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~------------------------ 685 (842)
+..+ +.. +.+|.+.|.+++|++++. .|++|+.|..|++|++...+....++
T Consensus 167 ~~~C-v~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 TDVC-VAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred CCeE-EEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8654 544 457999999999999988 66799999999999998432111111
Q ss_pred -----ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECC-CCe-------------EEEEEeCCCCCEEEE--EEcCCCCEE
Q 003177 686 -----CQSGATQMRFQPRLGRILAAAIENYISILDVE-TQV-------------CRLKLQGHKNQVHSV--CWNTSGEYL 744 (842)
Q Consensus 686 -----~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~-t~~-------------~~~~l~~h~~~V~sl--~~spdg~~L 744 (842)
+...|.|+.|- |+++++-+.++.|..|... -.+ .+..+.-....|.-+ +|++-.+.|
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 01112233333 4678888889999999872 111 122233233344444 556778899
Q ss_pred EEEe-CCeEEEEEcCCCCCceeE-EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 745 ASVS-DELVRVWSIGSGSKGECI-HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 745 asgs-Dg~I~IwDl~s~~~~~~i-~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
+.|. .|.|++||++......+. .........|...+|+.|+..|+..+.|++|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9998 999999999987653222 2222345678999999999999999999999999853
No 182
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.6e-15 Score=173.98 Aligned_cols=232 Identities=16% Similarity=0.111 Sum_probs=165.4
Q ss_pred CCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCc-eeeEeecCccceEEEEEcCC
Q 003177 581 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS 656 (842)
Q Consensus 581 Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~t~~~-~i~~~~~h~~~V~sl~fspd 656 (842)
+..|++||.+... ...+..|...|.+++|+|||+.|++++.+ ..|++||+.++.. .+..+.+ ...+++|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCC
Confidence 4689999987654 45677788899999999999999988754 3699999987653 2222333 3457899999
Q ss_pred CCcEEEEEeCCCcEE--EEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCC--CeEEEEEeCCCCC
Q 003177 657 KEDLLCSCDNNSEIR--YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVET--QVCRLKLQGHKNQ 731 (842)
Q Consensus 657 g~~llasgs~Dg~I~--vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s-~dg~I~IwDl~t--~~~~~~l~~h~~~ 731 (842)
|+.++++.+.+|.+. +||+.+++..........+....|+|++..++.++ .++...||++.. +.. ..+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC-
Confidence 998887777788655 45777666555444445678899999999877666 467777776643 322 222 3433
Q ss_pred EEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC---CCCeEE
Q 003177 732 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM---TENKTL 808 (842)
Q Consensus 732 V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl---~~~~~~ 808 (842)
.++.|+|||++|+..+...+.+||+.++.. ...... .....+.|+|+|++|++++.++.+.+|++ ......
T Consensus 336 -~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~---~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDNVVKQDLTSGST---EVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred -CCccCCCCCCEEEEEcCCCEEEEECCCCCe---EEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 467899999999888745567799988732 211111 23356789999999999999887776654 344444
Q ss_pred EEccCCCCeeEEEEeCC
Q 003177 809 TLSAHDKLVSSLAASTV 825 (842)
Q Consensus 809 ~~~~h~~~V~sla~spd 825 (842)
.+..|.+.+..++|+|-
T Consensus 410 ~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EccCCCCCCCCcccCCC
Confidence 67788888999999984
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=6.8e-15 Score=146.49 Aligned_cols=268 Identities=15% Similarity=0.176 Sum_probs=193.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEecCC----------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003177 562 KVESCHFSPDGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 631 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t----------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 631 (842)
.|.+-+|+|.+++|+.|..+|.|.++.+++ ...+....+|+++|+.++|. ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 467778999999999999999999998753 23445568999999999998 34677765 599999987
Q ss_pred CCCCcee-------eEeecCc-----cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCC-eeEEEEeCC
Q 003177 632 ENPDYSL-------RTFTGHS-----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPR 698 (842)
Q Consensus 632 ~t~~~~i-------~~~~~h~-----~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-i~~v~~sp~ 698 (842)
+...+.. .....|. -.|+++...|..+.+|.+| .|+.++.||+++|+..++++.+.. +.++..-..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 6432210 0111122 3588899998877777555 699999999999999999997554 777777666
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeCCC----------CCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEE
Q 003177 699 LGRILAAAIENYISILDVETQVCRLKLQGHK----------NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 768 (842)
Q Consensus 699 g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~----------~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~ 768 (842)
...+++|++||++++||+++++++..+...+ ..|-+++ -+..++++|+...+.+|.+++. ++...
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrss---e~t~v 242 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSS---ESTCV 242 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCC---CceEE
Confidence 7889999999999999999999988775321 2344554 4677888888889999999987 44444
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCC-CCEEEEEeCCCcEEEc
Q 003177 769 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV-NGMVASASHDKCVKIW 841 (842)
Q Consensus 769 ~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spd-g~~Lasgs~DG~V~IW 841 (842)
+. -...+..+.|..+ .+++++..+.|.-|.+..--............+..|+-. -++|-.++..+.+.|+
T Consensus 243 fp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 243 FP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred Ee-cccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 43 2456788888776 577777777899998765433333333334444444432 2456666666777665
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5e-16 Score=161.45 Aligned_cols=273 Identities=16% Similarity=0.185 Sum_probs=197.3
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcEEEEe
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC 588 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSp--dg~~Lasgs~Dg~I~vwd 588 (842)
+..++++...+.|++|+... +.. +..+++|...+..+.|.. ....+.+++.||+|++||
T Consensus 40 e~~vav~lSngsv~lyd~~t----------------g~~---l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD 100 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGT----------------GQL---LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWD 100 (376)
T ss_pred ceeEEEEecCCeEEEEeccc----------------hhh---hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEE
Confidence 46788888888888884432 222 445567777777888876 456799999999999999
Q ss_pred cCCCeEEEE--eccCC-CCeEEEEEcCCCCEEEEEeC----CCeEEEEEcCCCCceee-EeecCccceEEEEEcCCCCcE
Q 003177 589 TESFTVKST--LEEHT-QWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDL 660 (842)
Q Consensus 589 ~~t~~~~~~--l~~h~-~~I~~l~fspdg~~Latgs~----Dg~I~IWDl~t~~~~i~-~~~~h~~~V~sl~fspdg~~l 660 (842)
++....... +..+. .+..|++....+..+++|+. +-.|.+||++.....+. ....|...|+++.|+|....+
T Consensus 101 ~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl 180 (376)
T KOG1188|consen 101 IRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL 180 (376)
T ss_pred eecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe
Confidence 987665533 34555 46677777767888888764 66899999998766444 445799999999999999999
Q ss_pred EEEEeCCCcEEEEECCCC----ceeeEEeecCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEeCCC------
Q 003177 661 LCSCDNNSEIRYWSINNG----SCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHK------ 729 (842)
Q Consensus 661 lasgs~Dg~I~vwDl~t~----~~i~~~~~~~~i~~v~~sp~g-~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~------ 729 (842)
|++|+.||.|.+||++.. ..+.++.+...|.++.|..++ +.|.+.+......+|+++.+.+...+....
T Consensus 181 LlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~ 260 (376)
T KOG1188|consen 181 LLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDL 260 (376)
T ss_pred EEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhH
Confidence 999999999999999754 245667777889999998875 468899999999999999887655443211
Q ss_pred ------CCEEEEEEcC-CCCEEEE-Ee-CCeEEEEEc---CCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCe
Q 003177 730 ------NQVHSVCWNT-SGEYLAS-VS-DELVRVWSI---GSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYET 796 (842)
Q Consensus 730 ------~~V~sl~~sp-dg~~Las-gs-Dg~I~IwDl---~s~~~~~~i~~~~~-~~~~I~sv~~spdg~~L~sgs~dg~ 796 (842)
..+... .+| +...++. ++ -++..++-+ .++.....+..+.+ |...|.++.|...+..+++|+.||.
T Consensus 261 r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 261 RKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGL 339 (376)
T ss_pred Hhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCce
Confidence 011111 123 3333333 33 344444433 34433445555555 5567888999999999999999999
Q ss_pred EEEEECC
Q 003177 797 LELWNMT 803 (842)
Q Consensus 797 I~Iwdl~ 803 (842)
|.+|...
T Consensus 340 l~~Wk~~ 346 (376)
T KOG1188|consen 340 LQAWKVE 346 (376)
T ss_pred EEEEecC
Confidence 9999863
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=8.2e-15 Score=168.51 Aligned_cols=282 Identities=17% Similarity=0.285 Sum_probs=210.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC--C--eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003177 557 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--F--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 632 (842)
Q Consensus 557 ~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t--~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 632 (842)
..|+-.++|.++||+++++|+|..||.|.+|.--. . .....+.=|...|.+++|+++|.+|++|+..|.+.+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35777799999999999999999999999996322 1 2235566688999999999999999999999999999999
Q ss_pred CCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee------------cCCeeEEEEeCCCC
Q 003177 633 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLG 700 (842)
Q Consensus 633 t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~------------~~~i~~v~~sp~g~ 700 (842)
+++ ...+..-.++|..+.++||++.+. .+..|..|.+....+.....++.+ .+-.+.++++|.-+
T Consensus 282 T~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 876 455666778999999999988554 555699999988765544433332 22356789999888
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeC-----CC------CCEEEEEEcCCCCEEEEEe---------CC--eEEEEEcC
Q 003177 701 RILAAAIENYISILDVETQVCRLKLQG-----HK------NQVHSVCWNTSGEYLASVS---------DE--LVRVWSIG 758 (842)
Q Consensus 701 ~l~~~s~dg~I~IwDl~t~~~~~~l~~-----h~------~~V~sl~~spdg~~Lasgs---------Dg--~I~IwDl~ 758 (842)
.++..+..|.|.+||+-+.+.+..+.. +. -.++.++.+..|.++++.. || .+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 889999999999999988766655431 22 2467788888899998874 23 68889877
Q ss_pred CCCCceeEEE--eecCCCceEEEEEeC-CCC-EEEEEEcCCeEEEEECCCCe----------EE-EEccCCCCeeEEEEe
Q 003177 759 SGSKGECIHE--LSCTGNKFHSCVFHP-TFP-SLLVIGCYETLELWNMTENK----------TL-TLSAHDKLVSSLAAS 823 (842)
Q Consensus 759 s~~~~~~i~~--~~~~~~~I~sv~~sp-dg~-~L~sgs~dg~I~Iwdl~~~~----------~~-~~~~h~~~V~sla~s 823 (842)
.......+.+ ...|+..+...++.+ ... .+++++.||.++||-+.+.+ +. .-.-|..++++++|+
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 6544333322 335666555555433 333 78999999999999884322 11 112478899999999
Q ss_pred CCCCEEEEEeCCCcEEEcC
Q 003177 824 TVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 824 pdg~~Lasgs~DG~V~IWd 842 (842)
.||..| +++.|++|.|||
T Consensus 519 ~dGsll-a~s~~~~Itiwd 536 (792)
T KOG1963|consen 519 QDGSLL-AVSFDDTITIWD 536 (792)
T ss_pred CCCcEE-EEecCCEEEEec
Confidence 999655 566889999997
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=9.3e-16 Score=166.52 Aligned_cols=262 Identities=16% Similarity=0.235 Sum_probs=189.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEE-cC-------CCCEEEEEeCCCeEEEE
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SP-------SLSRLATSSADRTVRVW 629 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~f-sp-------dg~~Latgs~Dg~I~IW 629 (842)
.|...|.||.|+.+...+.++ .|..+.+|.-.+......+.-....|....+ -+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 466778899999877666655 4556666643333333222222222222111 11 23578889999999888
Q ss_pred EcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCC
Q 003177 630 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 709 (842)
Q Consensus 630 Dl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg 709 (842)
+-.. ..-+....|.+.|.|-.|+|+|.-++ ++++||.|++|.-...-..........|.|++|.|+.+.++.+. .+
T Consensus 91 ~k~~--rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~ 166 (737)
T KOG1524|consen 91 NKSA--RVERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG 166 (737)
T ss_pred cccc--hhhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence 7542 23567788999999999999998666 88899999999865322222233457899999999988776654 46
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003177 710 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 788 (842)
Q Consensus 710 ~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L 788 (842)
.+.|=.+.....+...+.|.+-|.++.|++..+++++|+ |-..+|||-.. ..+..-..|+.+|++++|.|+ . +
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~-~ 240 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-K-D 240 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-c-c
Confidence 677777777777778899999999999999999999999 88999999654 466777789999999999999 4 3
Q ss_pred EEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 789 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 789 ~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
+..++.+++++= ....+.|..++|++||..++.|+..|.|.+
T Consensus 241 ~~v~S~nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 241 YLLWSYNTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeeeeeeec----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 333344455521 244578999999999999999999987753
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.68 E-value=2.7e-15 Score=166.06 Aligned_cols=240 Identities=16% Similarity=0.223 Sum_probs=183.8
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003177 552 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 631 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 631 (842)
...++++|++.|+|++|+.||+++|+|+.|+.|.||+..-... ..+ .|.+.|.|+.|+|-...|++++-. ..-+|..
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~ 121 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSP 121 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-eee-ccCCeeeEeecCchHHHhhhcchh-hccccCh
Confidence 3678999999999999999999999999999999998543222 222 599999999999999999998754 3678887
Q ss_pred CCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe---ecCCeeEEEEeCCC-----CEEE
Q 003177 632 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRL-----GRIL 703 (842)
Q Consensus 632 ~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---~~~~i~~v~~sp~g-----~~l~ 703 (842)
+... +... .....|.+++|..||. +++.|-.+|+|.+-+-...+.+..-. .+++|.+++|+|.. ..++
T Consensus 122 ~qK~--V~K~-kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 122 EQKS--VSKH-KSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred hhhh--HHhh-hhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 7533 2221 2346788999999987 66688889999998765433333333 35679999999964 3466
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe
Q 003177 704 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 782 (842)
Q Consensus 704 ~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~s 782 (842)
+.....++.+|.+.. +.+..-..-.-...|+.+.++|+|+..|+ |+.+++|.-. + ..+.++......|+.++..
T Consensus 198 V~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G---vrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G---VRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C---eEEeeccccceeEEEEEEc
Confidence 677777777777653 33332222344567899999999999888 9999999743 3 5566666678899999999
Q ss_pred CCCCEEEEEEcCCeEEEEECC
Q 003177 783 PTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 783 pdg~~L~sgs~dg~I~Iwdl~ 803 (842)
|++.++++|+.||+|..|++-
T Consensus 273 PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cCCceEEEEEccCeeehhhhH
Confidence 999999999999999999874
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=2.3e-15 Score=173.01 Aligned_cols=246 Identities=17% Similarity=0.223 Sum_probs=188.3
Q ss_pred CCCCeEEEEEcC-CCCEEEEEECCCcEEEEecCCCeE--E----EEeccCCCCeEEEEEcCCCC--EEEEEeCCCeEEEE
Q 003177 559 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--K----STLEEHTQWITDVRFSPSLS--RLATSSADRTVRVW 629 (842)
Q Consensus 559 H~~~V~sv~fSp-dg~~Lasgs~Dg~I~vwd~~t~~~--~----~~l~~h~~~I~~l~fspdg~--~Latgs~Dg~I~IW 629 (842)
-...|+|++|+| +..+||.|+.+|.|.+||+..+.. . .....|..+|+.+.|..+.. -|++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 345699999999 667899999999999999987654 2 22346999999999987544 49999999999999
Q ss_pred EcCCCCceeeE-----ee------cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce--------e-eEEeecCC
Q 003177 630 DTENPDYSLRT-----FT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--------A-GVFKCQSG 689 (842)
Q Consensus 630 Dl~t~~~~i~~-----~~------~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~--------i-~~~~~~~~ 689 (842)
+++.-..+... .. .-...+++++|.+...+.++.|+++|.|..-+-...+. . ....+.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 88743321111 11 12346889999999888999999999988744332211 1 12224677
Q ss_pred eeEEEEeCCCCEEEEEEcCCeEEEEECC-CCeEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeE
Q 003177 690 ATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECI 766 (842)
Q Consensus 690 i~~v~~sp~g~~l~~~s~dg~I~IwDl~-t~~~~~~l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i 766 (842)
|.++.++|-+..++..+.|..++||... ...++..+..+...|++++|||... .++++. ||.|.|||+..... .++
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-~Pv 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-EPV 479 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-CCc
Confidence 9999999988887777779999999998 6778888888888899999999775 445555 99999999987543 344
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003177 767 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 805 (842)
Q Consensus 767 ~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~ 805 (842)
..........+.+.|++.|+.|++|...|.|++|++...
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 444444666778889999999999999999999998643
No 189
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=7.5e-15 Score=146.19 Aligned_cols=229 Identities=20% Similarity=0.216 Sum_probs=169.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 003177 604 WITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 674 (842)
Q Consensus 604 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~t---------~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwD 674 (842)
.|..-+|+|.+++|+.|+.+|.|.++.+.+ ++..+..+.+|.++|+.++|+. .+|.+|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEee
Confidence 466678999999999999999999998762 2344566789999999999993 3565766 69999998
Q ss_pred CCCCce------eeEEe--------ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 003177 675 INNGSC------AGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 740 (842)
Q Consensus 675 l~t~~~------i~~~~--------~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spd 740 (842)
.+.... +.... .-..|+.+...|..+.++.++.|+.++.||+++|+..+++++|++.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 764322 11111 1235889999999999999999999999999999999999999999999998444
Q ss_pred CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc
Q 003177 741 GEYLASVS-DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA 812 (842)
Q Consensus 741 g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~ 812 (842)
...+++|+ ||+++|||+++.+....+...+.. +..|-+++. +..++++|+. ..+.+|.++..++.....
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEe
Confidence 44556666 999999999998443333322211 122444444 4446665544 479999999999887777
Q ss_pred CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 813 HDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 813 h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
....|..+.|.. +.+++++....|.-|
T Consensus 245 ipa~v~~v~F~~--d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVD--DCVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeec--ceEEEeccccceeee
Confidence 788888888864 346666655555444
No 190
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=1.2e-14 Score=148.09 Aligned_cols=281 Identities=14% Similarity=0.210 Sum_probs=203.4
Q ss_pred EEEecCCCCCeEEEEEcC--C-CCEEEEEEC----CCcEEEEec--CCCeEEEEe-ccCCCCeEEEEEcCCCC-----EE
Q 003177 553 FQLIPASTSKVESCHFSP--D-GKLLATGGH----DKKAVLWCT--ESFTVKSTL-EEHTQWITDVRFSPSLS-----RL 617 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSp--d-g~~Lasgs~----Dg~I~vwd~--~t~~~~~~l-~~h~~~I~~l~fspdg~-----~L 617 (842)
+..+.++- .++++.|+. + ..+||.|+. .++|.|..+ ++++.+..- ..|..+++.+.|.|+.. +|
T Consensus 38 iy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 38 IYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred EEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence 44444433 478888884 2 346888874 356666543 344444222 36899999999999853 45
Q ss_pred EEEeCCCeEEEEEcCCCCcee--------eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc----eeeEEe
Q 003177 618 ATSSADRTVRVWDTENPDYSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFK 685 (842)
Q Consensus 618 atgs~Dg~I~IWDl~t~~~~i--------~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~----~i~~~~ 685 (842)
||++ -.+++|.+...+..+ ..-..+..++++++|+.-..+++.+++-|-++.|||++++. ....+.
T Consensus 117 ATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 117 ATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred hccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 5553 469999987432111 11234567899999999888899999999999999999873 344566
Q ss_pred ecCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEe---CCCCCEEEEEEcCC-CCEEEEEe--CCeEEEEEcC
Q 003177 686 CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQ---GHKNQVHSVCWNTS-GEYLASVS--DELVRVWSIG 758 (842)
Q Consensus 686 ~~~~i~~v~~sp~g-~~l~~~s~dg~I~IwDl~t~~~~~~l~---~h~~~V~sl~~spd-g~~Lasgs--Dg~I~IwDl~ 758 (842)
+..+|..++|...+ +.|++++.||.+++||++..+.-..+. ....+...++|++. -+|+++.. ...|.|.|++
T Consensus 195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 78899999999855 457788899999999999764433332 22457888999884 56777766 4589999999
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE------EEEccCCCCeeEEEEeCC-CCEEE
Q 003177 759 SGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT------LTLSAHDKLVSSLAASTV-NGMVA 830 (842)
Q Consensus 759 s~~~~~~i~~~~~~~~~I~sv~~spdg-~~L~sgs~dg~I~Iwdl~~~~~------~~~~~h~~~V~sla~spd-g~~La 830 (842)
... ..+..+..|...|+.++|.|.. ..|++++.|..+.|||+..-.. +......+.|+.+.|++. ...|+
T Consensus 275 ~P~--tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwia 352 (364)
T KOG0290|consen 275 VPC--TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIA 352 (364)
T ss_pred CCC--cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEE
Confidence 764 6788899999999999999975 5788888888999999965322 223346788999999964 45777
Q ss_pred EEeCCCcEE
Q 003177 831 SASHDKCVK 839 (842)
Q Consensus 831 sgs~DG~V~ 839 (842)
.+.. +++.
T Consensus 353 i~~~-kkle 360 (364)
T KOG0290|consen 353 ICFG-KKLE 360 (364)
T ss_pred EEec-Ceee
Confidence 6654 4443
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=8e-14 Score=146.63 Aligned_cols=233 Identities=17% Similarity=0.251 Sum_probs=175.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEEcCCCCce
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYS 637 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D--g~I~IWDl~t~~~~ 637 (842)
...|..+.|+.|...|.+|+.|| .++|+.+..............|..+-|+. .++|..+.+ +.++++++.....
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~- 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT- 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce-
Confidence 34577788999999999999987 57888776554333333444566667764 466665554 3589999886543
Q ss_pred eeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec----CCeeEEEEeCCCCEEEEEE--cCCeE
Q 003177 638 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----SGATQMRFQPRLGRILAAA--IENYI 711 (842)
Q Consensus 638 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~----~~i~~v~~sp~g~~l~~~s--~dg~I 711 (842)
+..+. ....|.++.++.+ +++ ++- ...|+|||+++.+.+.++... .++..+.+++.+.+++.-+ ..|.|
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLv-V~L-ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLV-VCL-EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEE-EEE-cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 33332 4567999998854 344 444 334999999999999888753 3355555666656776543 35899
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeecC--CCceEEEEEeCCCCE
Q 003177 712 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPS 787 (842)
Q Consensus 712 ~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~~--~~~I~sv~~spdg~~ 787 (842)
.+||+.+-..+..+..|++.+-+++|+++|.+||+++ .| .||||.+.++ ..+.+++-. ...|.+++|++++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence 9999999999999999999999999999999999999 45 6899999988 556665543 345789999999999
Q ss_pred EEEEEcCCeEEEEECCC
Q 003177 788 LLVIGCYETLELWNMTE 804 (842)
Q Consensus 788 L~sgs~dg~I~Iwdl~~ 804 (842)
|++.+..++|+||.+..
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998854
No 192
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.9e-14 Score=163.42 Aligned_cols=234 Identities=13% Similarity=0.111 Sum_probs=171.7
Q ss_pred CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCC
Q 003177 582 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 658 (842)
Q Consensus 582 g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~ 658 (842)
..|.+||.+.... ..+..+...+.+.+|+|||+.|+..+. +..|++||+.++.. ..+......+..+.|+|||+
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 3688999876544 334456778999999999999987653 35799999987642 33333334456789999999
Q ss_pred cEEEEEeCCC--cEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEEEEEeCCCCCEE
Q 003177 659 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 733 (842)
Q Consensus 659 ~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~d-g--~I~IwDl~t~~~~~~l~~h~~~V~ 733 (842)
.++++.+.+| .|++||+.+++..........+....|+|+++.|+.++.+ + .|+++|+.++... .+..+...+.
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766565 5999999988776665555667889999999998877764 3 5666677776443 3333444566
Q ss_pred EEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 003177 734 SVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 806 (842)
Q Consensus 734 sl~~spdg~~Lasgs--D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg---~I~Iwdl~~~~ 806 (842)
+.+|+|||++|+..+ + ..|++||+.++.. ..+.. ........|+|||..|++++.++ .++++++....
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~----~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe----EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 789999999988765 3 3688999987632 22221 12234678999999999999876 47888987777
Q ss_pred EEEEccCCCCeeEEEEeC
Q 003177 807 TLTLSAHDKLVSSLAAST 824 (842)
Q Consensus 807 ~~~~~~h~~~V~sla~sp 824 (842)
...+..|.+.+...+|+|
T Consensus 410 ~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEECccCCCCcCCcccCC
Confidence 777878889999999987
No 193
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=5.2e-15 Score=169.73 Aligned_cols=220 Identities=17% Similarity=0.196 Sum_probs=159.1
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEecCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEE
Q 003177 554 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVR 627 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~Lasgs~D---g~I~vwd~~t~~~--~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~ 627 (842)
..+..|...|.+.+|||||+.|+.++.+ ..|++||+.+++. +..+.+| ..+++|+|||+.|++++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 4566788889999999999999988754 3699999988754 3333333 44789999999888765 678766
Q ss_pred EE--EcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-ceeeEEeecCCeeEEEEeCCCCEEEE
Q 003177 628 VW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILA 704 (842)
Q Consensus 628 IW--Dl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-~~i~~~~~~~~i~~v~~sp~g~~l~~ 704 (842)
|| |+.++. ...+..+...+.++.|+|+|..+++++..++.+.||++... .....+.. .. .+..|+|+++.+++
T Consensus 274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~-~~-~~~~~SpDG~~ia~ 349 (429)
T PRK01742 274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG-RG-YSAQISADGKTLVM 349 (429)
T ss_pred EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC-CC-CCccCCCCCCEEEE
Confidence 65 554433 45666677788899999999988877777888888876532 22233322 22 46789999999988
Q ss_pred EEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003177 705 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 783 (842)
Q Consensus 705 ~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~sp 783 (842)
++.++ +.+||+.++........+ ...++.|+|||++|+.++ ++.+.+|++.+. ....+..+..+.+.+..++|+|
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred EcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCceEEccCCCCCCCCcccCC
Confidence 87754 666999988654332222 345688999999999988 887777776421 1156777777778888899998
Q ss_pred C
Q 003177 784 T 784 (842)
Q Consensus 784 d 784 (842)
-
T Consensus 426 ~ 426 (429)
T PRK01742 426 Y 426 (429)
T ss_pred C
Confidence 5
No 194
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=4.8e-16 Score=169.13 Aligned_cols=237 Identities=17% Similarity=0.272 Sum_probs=170.4
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEe-ccCCCCeEEEEEcC--CCCEEEEEeCCCeEEE
Q 003177 552 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVRV 628 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l-~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~I 628 (842)
....|.||++.|.|+.|+.||.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|.| +.+.+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 45678899999999999999999999999999999999888888776 58999999999999 4678999999999999
Q ss_pred EEcCC---------CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc-eeeEEee----------cC
Q 003177 629 WDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC----------QS 688 (842)
Q Consensus 629 WDl~t---------~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~~----------~~ 688 (842)
||++. .......+..|...|..|+..|++.+.+.++++||+|+-+|++... |-..... --
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99985 2234566778999999999999999999999999999999998632 1111100 12
Q ss_pred CeeEEEEeCCCC-EEEEEEcCCeEEEEECCCCeEEE-EEeCC----CCCEEEEE-EcCCCCEEEEEeCCeEEEEEcCCCC
Q 003177 689 GATQMRFQPRLG-RILAAAIENYISILDVETQVCRL-KLQGH----KNQVHSVC-WNTSGEYLASVSDELVRVWSIGSGS 761 (842)
Q Consensus 689 ~i~~v~~sp~g~-~l~~~s~dg~I~IwDl~t~~~~~-~l~~h----~~~V~sl~-~spdg~~LasgsDg~I~IwDl~s~~ 761 (842)
...++.++|... +|++|+.|-..++||.+...+.. .-..+ .....|+. |+|.+. ...+|.+.
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl---kn~~gn~~-------- 270 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL---KNSQGNLD-------- 270 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---cCcccccc--------
Confidence 467889999654 57788889999999965321110 00000 01111221 122211 00011110
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 762 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 762 ~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
.....++-+.|+|+|..|++.-....|+++|+..++..
T Consensus 271 ---------~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 271 ---------RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred ---------cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 00123456789999988888877779999999877644
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=1.2e-14 Score=150.09 Aligned_cols=226 Identities=15% Similarity=0.187 Sum_probs=173.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC---CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003177 556 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 632 (842)
Q Consensus 556 l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t---~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 632 (842)
+.--..+|+|.+|++|+..+|++.....|.||.... .+...++..|...|++|+|.|..+.|++|+.|..-+||...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 344457899999999999999999999999998765 45678899999999999999999999999999999999984
Q ss_pred CCC--ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceee-----EEeecCCeeEEEEeCCCCEEEEE
Q 003177 633 NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAA 705 (842)
Q Consensus 633 t~~--~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~-----~~~~~~~i~~v~~sp~g~~l~~~ 705 (842)
.+. .+...+..+...++++.|+|.++ .|++|+....|.||-++...--. .....+.|.++.|+|++-.+++|
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 332 23455667889999999999965 67788888899998877543221 12234678999999999999999
Q ss_pred EcCCeEEEEECC-----C-------------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeE
Q 003177 706 AIENYISILDVE-----T-------------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 766 (842)
Q Consensus 706 s~dg~I~IwDl~-----t-------------~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i 766 (842)
+.|+..+||..- . |.....+....+.|..+.|+|+|..|+-.+ |+.|.+-|...... .+
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~v 242 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--RV 242 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--hc
Confidence 999999888542 1 112233334567899999999999999888 99999999876531 22
Q ss_pred EEeecCCCceEEEEEeCC
Q 003177 767 HELSCTGNKFHSCVFHPT 784 (842)
Q Consensus 767 ~~~~~~~~~I~sv~~spd 784 (842)
.......-+..++.|-.+
T Consensus 243 ~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 243 QSVATAQLPLLSVSWISE 260 (361)
T ss_pred cchhhccCCceeeEeecC
Confidence 333333345555555443
No 196
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.66 E-value=3.9e-14 Score=146.41 Aligned_cols=271 Identities=15% Similarity=0.210 Sum_probs=200.4
Q ss_pred CCeEEEEEcCCCCEEEE-EECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEEcCCCCcee
Q 003177 561 SKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSL 638 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Las-gs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~-Latgs~Dg~I~IWDl~t~~~~i 638 (842)
+.|.-+.|..|..++++ ...|+.|.+|++...+-...+......+.+++|+|||+. |.+...|-.|.||.+.+.....
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 45777888887766554 456789999999988888888888899999999999965 5566779999999999865422
Q ss_pred eEeecCccceEEEEEcCCCCcEEEEEeC-----------------------------------CCcEEEEECCCCceeeE
Q 003177 639 RTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------------------------------NSEIRYWSINNGSCAGV 683 (842)
Q Consensus 639 ~~~~~h~~~V~sl~fspdg~~llasgs~-----------------------------------Dg~I~vwDl~t~~~i~~ 683 (842)
+......+..++|+|+|.+..+..-. +..+.|||---.-.+..
T Consensus 129 --~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 129 --LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred --ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 22233456888999998754332211 22345555433333334
Q ss_pred EeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE----------------------------------------
Q 003177 684 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL---------------------------------------- 723 (842)
Q Consensus 684 ~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~---------------------------------------- 723 (842)
+...-++..++|+|.+.++++|+.|+.++|.+--+.+...
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 5556789999999999999999999988776432211110
Q ss_pred --------------------EEe------CCCCCEEEEEEcCCCCEEEEEeCC---eEEEEEcCCCCCceeEEEeecCCC
Q 003177 724 --------------------KLQ------GHKNQVHSVCWNTSGEYLASVSDE---LVRVWSIGSGSKGECIHELSCTGN 774 (842)
Q Consensus 724 --------------------~l~------~h~~~V~sl~~spdg~~LasgsDg---~I~IwDl~s~~~~~~i~~~~~~~~ 774 (842)
.++ ...-.+.-++|++|..|+++-.|. .+-+||++.. .++.+-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhcc
Confidence 000 011235568999999999998754 7999999875 3334444578
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCc
Q 003177 775 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 837 (842)
Q Consensus 775 ~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~ 837 (842)
+|....|+|....|+++.....+++|.......+......-.|..+.|.-+|..++.++.|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999999999999999999999998888877777788999999999999999998863
No 197
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.7e-14 Score=148.38 Aligned_cols=278 Identities=15% Similarity=0.237 Sum_probs=194.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEecc-CCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc-
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY- 636 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~-h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~t~~~- 636 (842)
+-.+..++|++.-..+|++..|-.|++||-.. ++...++. ....|+|++|.|. .+-|++|+..| |.||..+....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34578899999777789999999999999766 55545543 3467999999996 45677776555 99998763221
Q ss_pred ------------eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEE-eecCCeeEEEEeCCCCEEE
Q 003177 637 ------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRIL 703 (842)
Q Consensus 637 ------------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~~i~~v~~sp~g~~l~ 703 (842)
.+....+| ..|+++.|.+||..++-++-.|..|.|||..++.++... ...+++.-+.|+|++.+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 12233445 689999999998866655557889999999999888776 4567899999999999999
Q ss_pred EEEcCCeEEEEECC-CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCce------------eEEEee
Q 003177 704 AAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE------------CIHELS 770 (842)
Q Consensus 704 ~~s~dg~I~IwDl~-t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~------------~i~~~~ 770 (842)
++.-|+..++|... +.....-.. ..+.|...+|+|+|++|+....+.-++|.+....+.. .+..+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred Eecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 99999999999544 333333222 3458999999999999888776666666664322110 011110
Q ss_pred -----c----CCCceEEEEEeCCCCEEEEEEcCC--------eEEEEECCCCeEEEEc--c--CCCCeeEEEEeC---CC
Q 003177 771 -----C----TGNKFHSCVFHPTFPSLLVIGCYE--------TLELWNMTENKTLTLS--A--HDKLVSSLAAST---VN 826 (842)
Q Consensus 771 -----~----~~~~I~sv~~spdg~~L~sgs~dg--------~I~Iwdl~~~~~~~~~--~--h~~~V~sla~sp---dg 826 (842)
. -.+++.+++|+|.|.+|++.-..+ .|.+||......+.+. + .......|+|+| ++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 1 146789999999999999876544 4777887766555332 1 112245566665 45
Q ss_pred CEEEEEeCCCcEEEc
Q 003177 827 GMVASASHDKCVKIW 841 (842)
Q Consensus 827 ~~Lasgs~DG~V~IW 841 (842)
.+|..|=..|.+.-|
T Consensus 414 ~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRY 428 (445)
T ss_pred cEEEEEeccCceEee
Confidence 566666666766543
No 198
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=4e-16 Score=167.36 Aligned_cols=262 Identities=16% Similarity=0.253 Sum_probs=211.7
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEee
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 642 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~ 642 (842)
-+.+.|+.+|++|+.|+..|.|..+|..++++...+. -...|.++.|..+..+||++ -...++|||-.. ..++.+.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G--tElHClk 207 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNG--TELHCLK 207 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCCC--cEEeehh
Confidence 4568999999999999999999999999999988885 44669999999988888887 567899998763 3356666
Q ss_pred cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 003177 643 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVC 721 (842)
Q Consensus 643 ~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~ 721 (842)
.| ..|..+.|.|. .++|++++..|.++.-|+.+|+.+..+.. .+.+..++-+|-...+-+|...|+|.+|.....++
T Consensus 208 ~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 208 RH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 55 46899999998 67999999999999999999999988876 45577888899988888999999999999999999
Q ss_pred EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003177 722 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 800 (842)
Q Consensus 722 ~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iw 800 (842)
+..+..|.++|.+|++.++|.|+++++ |..|+|||++.. ..++++.. ..+...+++|..| +++.+....|.||
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~---~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF---YQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc---cccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 999999999999999999999999999 999999999987 34444443 4566778888876 4566666689999
Q ss_pred E-CCCCe--E-EEEcc--CCCCeeEEEEeCCCCEEEEEeCCC
Q 003177 801 N-MTENK--T-LTLSA--HDKLVSSLAASTVNGMVASASHDK 836 (842)
Q Consensus 801 d-l~~~~--~-~~~~~--h~~~V~sla~spdg~~Lasgs~DG 836 (842)
. .-.+. . ..... ..+.|..+.|+|-...|-.|-..|
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 4 33311 1 12222 345899999999776666655444
No 199
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.6e-14 Score=156.89 Aligned_cols=276 Identities=14% Similarity=0.160 Sum_probs=204.2
Q ss_pred CCCCCeEEEEEcCCCCE-EEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003177 558 ASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 636 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~-Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~ 636 (842)
.|....+.|..+|||+| +|+|..--.|++||+....+...-.-....|.-.-++.|-..++.-..|.+|-+..--....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 46777889999999997 56777888999999998766544433445566666676766677777788777654332111
Q ss_pred eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec-CCeeEEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 637 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILD 715 (842)
Q Consensus 637 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~~v~~sp~g~~l~~~s~dg~I~IwD 715 (842)
-..-...-.+++++.-.-.+++ ++....|+-++++.|..+..+... ++++++.+++..+.|++|+.+|.|..||
T Consensus 129 ----~~RIP~~GRDm~y~~~scDly~-~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 129 ----RTRIPKFGRDMKYHKPSCDLYL-VGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred ----eeecCcCCccccccCCCccEEE-eecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 0111123345666644344554 444678999999999999988875 7799999999999999999999999999
Q ss_pred CCCCeEEEEEe------CCCC-----CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003177 716 VETQVCRLKLQ------GHKN-----QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 783 (842)
Q Consensus 716 l~t~~~~~~l~------~h~~-----~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~sp 783 (842)
.++...+..+. .|.+ .|+++.|+.+|-.+++|. +|.|.|||+++.. ..+..-.....+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~--pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK--PLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC--ceeecccCCccceeeecccc
Confidence 99876555443 2333 499999999999999999 9999999999873 23333334456788899977
Q ss_pred CCCE-EEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 784 TFPS-LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 784 dg~~-L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
.+.. -++......++|||-.+|+..........++.+|+-|++.++++|-+++.+..
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCccee
Confidence 6432 33344445899999999999977777777999999999999999988877654
No 200
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=3.2e-13 Score=151.01 Aligned_cols=285 Identities=17% Similarity=0.178 Sum_probs=186.0
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEE
Q 003177 552 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWD 630 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWD 630 (842)
.+..++.....-..+.|++||+++++++.||.|.++|+.+.+.+.++.... ...++++++||+++++++ .++.|.|+|
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVID 106 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEec
Confidence 355555544433457899999999999999999999999999999987654 468899999999998776 589999999
Q ss_pred cCCCCceeeEeec-------CccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcee--eEEeecCCeeEEEEeCCCCE
Q 003177 631 TENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKCQSGATQMRFQPRLGR 701 (842)
Q Consensus 631 l~t~~~~i~~~~~-------h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i--~~~~~~~~i~~v~~sp~g~~ 701 (842)
..+.+. +..+.. ....+..|..++.+..++++.-+.+.|.+.|....+.+ ..+..........|+|++++
T Consensus 107 ~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 107 AETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp TTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred cccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 988654 444432 23467888888887767766666789999998765533 34455667889999999999
Q ss_pred EEEEEc-CCeEEEEECCCCeEEEEEeC----CCCCEEEEE-------EcC--CCCEE-EEEeCCeEEEEEcCCCCCceeE
Q 003177 702 ILAAAI-ENYISILDVETQVCRLKLQG----HKNQVHSVC-------WNT--SGEYL-ASVSDELVRVWSIGSGSKGECI 766 (842)
Q Consensus 702 l~~~s~-dg~I~IwDl~t~~~~~~l~~----h~~~V~sl~-------~sp--dg~~L-asgsDg~I~IwDl~s~~~~~~i 766 (842)
++++.. ++.|.++|.++++.+..+.. |..++..+- |.. .+.+. ...+.+.+.+||..+. +.+
T Consensus 186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w---kvv 262 (369)
T PF02239_consen 186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW---KVV 262 (369)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT---SEE
T ss_pred eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC---eEE
Confidence 887654 68999999999988776542 444444332 221 22222 2222445666777666 778
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEE---E-cCCeEEEEECCCCeEEEEccC--CCCeeEEEEeCCCCEEEEEeCCC--cE
Q 003177 767 HELSCTGNKFHSCVFHPTFPSLLVI---G-CYETLELWNMTENKTLTLSAH--DKLVSSLAASTVNGMVASASHDK--CV 838 (842)
Q Consensus 767 ~~~~~~~~~I~sv~~spdg~~L~sg---s-~dg~I~Iwdl~~~~~~~~~~h--~~~V~sla~spdg~~Lasgs~DG--~V 838 (842)
..+...+.. ..+..||+++++++. + ..+.|.++|..+.+.+..... ...+..+.|++||+.+..+..|+ .|
T Consensus 263 ~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i 341 (369)
T PF02239_consen 263 KTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAI 341 (369)
T ss_dssp EEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEE
T ss_pred EEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEE
Confidence 888877666 788899999999998 3 346999999999987743322 23599999999999766655443 58
Q ss_pred EEcC
Q 003177 839 KIWK 842 (842)
Q Consensus 839 ~IWd 842 (842)
.|||
T Consensus 342 ~v~D 345 (369)
T PF02239_consen 342 VVYD 345 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=7.5e-14 Score=146.85 Aligned_cols=230 Identities=13% Similarity=0.183 Sum_probs=179.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCc
Q 003177 602 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGS 679 (842)
Q Consensus 602 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D--g~I~vwDl~t~~ 679 (842)
...+..+.|+.+...|..|+.|| .++|..+.-.... ........|..+-|+.. +++..+.+ +.+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~-~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF-SKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh-cccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence 34577788999999999999998 5788877544311 11122334555667633 55555543 459999999999
Q ss_pred eeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeC---CCCCEEEEEEcCCCCEEEEEe---CCeEE
Q 003177 680 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS---DELVR 753 (842)
Q Consensus 680 ~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~---h~~~V~sl~~spdg~~Lasgs---Dg~I~ 753 (842)
.+..+.....|.++.++.+ .++++-. ..|+|||+++-+.+.++.. +...+.++.+++.+.||+.-+ .|.|.
T Consensus 80 ~ICe~~fpt~IL~VrmNr~--RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNRK--RLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEccc--eEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 9999988999999999764 4555444 4499999999998887764 344566666666777988754 78999
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEE-EEccC--CCCeeEEEEeCCCCEE
Q 003177 754 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAH--DKLVSSLAASTVNGMV 829 (842)
Q Consensus 754 IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg-~I~Iwdl~~~~~~-~~~~h--~~~V~sla~spdg~~L 829 (842)
|||+.+. ..+..+..|.+.+-+++|+++|.+|++++..| .|+||.+.+|..+ .+... ...|.+++|+||+.+|
T Consensus 157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999887 78888889999999999999999999999999 6899999999877 44322 3468899999999999
Q ss_pred EEEeCCCcEEEcC
Q 003177 830 ASASHDKCVKIWK 842 (842)
Q Consensus 830 asgs~DG~V~IWd 842 (842)
++.|..++|+||+
T Consensus 234 ~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 234 AASSNTETVHIFK 246 (391)
T ss_pred EEecCCCeEEEEE
Confidence 9999999999985
No 202
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=6.6e-14 Score=160.86 Aligned_cols=234 Identities=16% Similarity=0.087 Sum_probs=169.1
Q ss_pred CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeeEeecCccceEEEEEcCCCC
Q 003177 582 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 658 (842)
Q Consensus 582 g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~ 658 (842)
..|++||.... ....+..+...+.+++|+||++.|+.++.+ ..|++||+.++.. ..+..+.+...++.|+|+|+
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence 36889998644 444566677889999999999999988753 4699999987653 33344455566889999999
Q ss_pred cEEEEEeCCC--cEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEc-CC--eEEEEECCCCeEEEEEeCCCCCEE
Q 003177 659 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVH 733 (842)
Q Consensus 659 ~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~-dg--~I~IwDl~t~~~~~~l~~h~~~V~ 733 (842)
.++++.+.+| .|++||+.+++..............+|+|+++.+++++. +| .|+++|+.++..... ..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCcc
Confidence 8887777666 599999998876554443344567899999999888775 34 477778877654332 22334455
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 003177 734 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 806 (842)
Q Consensus 734 sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg---~I~Iwdl~~~~ 806 (842)
.++|+|||++|+..+ ++ .|.+||+.++. .. .+. +......+.|+|+|++|+..+.++ .|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~---~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS---VR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCC---eE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 789999999998765 32 69999998763 22 222 222345679999999988877643 78899997766
Q ss_pred EEEEccCCCCeeEEEEeC
Q 003177 807 TLTLSAHDKLVSSLAAST 824 (842)
Q Consensus 807 ~~~~~~h~~~V~sla~sp 824 (842)
...+..+.+.+..++|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666666677788888886
No 203
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.2e-13 Score=158.85 Aligned_cols=234 Identities=13% Similarity=0.148 Sum_probs=170.8
Q ss_pred CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCC
Q 003177 582 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 658 (842)
Q Consensus 582 g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~ 658 (842)
..|++||.+.. ....+..|...+.+.+|+|||+.|+..+. +..|++||+.++.. ..+..+.+.+.+.+|+|+|+
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 47888997554 44556678889999999999999988764 46899999987653 44555667788999999999
Q ss_pred cEEEEEeCCCc--EEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEEeCCCCCEE
Q 003177 659 DLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVH 733 (842)
Q Consensus 659 ~llasgs~Dg~--I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~d---g~I~IwDl~t~~~~~~l~~h~~~V~ 733 (842)
.++++.+.++. |++||+.++................|+|+++.++.++.. ..|+++|+.++.... +..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 88888776665 788899888765544444456778999999998877743 368889988765443 333455667
Q ss_pred EEEEcCCCCEEEEEe-C---CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC------CeEEEEECC
Q 003177 734 SVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMT 803 (842)
Q Consensus 734 sl~~spdg~~Lasgs-D---g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d------g~I~Iwdl~ 803 (842)
...|+|||++|+... + ..|.+||+..+. ...+. ....+..+.|+|||+.|+..+.+ ..|+++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 789999999998876 2 268888876542 22222 22346778999999998877653 268888988
Q ss_pred CCeEEEEccCCCCeeEEEEeCC
Q 003177 804 ENKTLTLSAHDKLVSSLAASTV 825 (842)
Q Consensus 804 ~~~~~~~~~h~~~V~sla~spd 825 (842)
++....+. ..+.+...+|+|-
T Consensus 413 g~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 413 GRNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCceEEcc-CCCCccCcccCCC
Confidence 77665544 3556777888763
No 204
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.63 E-value=2.3e-14 Score=145.99 Aligned_cols=211 Identities=20% Similarity=0.362 Sum_probs=164.5
Q ss_pred CeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeE-EEEe-----ccCCCCeEEEEEcC--CCCEE
Q 003177 547 GFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTL-----EEHTQWITDVRFSP--SLSRL 617 (842)
Q Consensus 547 g~~~~~i~~l~-gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~-~~~l-----~~h~~~I~~l~fsp--dg~~L 617 (842)
..++..+..|. .|-+.|.|+.|.|++..||+-. |..|.+|++..... +..+ .+|....++-+|+| +++.+
T Consensus 109 ~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 109 SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence 34556666676 6777999999999999998876 88999999987665 3333 23566788899999 68888
Q ss_pred EEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc-eeeEEeecC-CeeEEEE
Q 003177 618 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQS-GATQMRF 695 (842)
Q Consensus 618 atgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~~~~-~i~~v~~ 695 (842)
++. .|+++..||+++..+...+-..|...|.+++|+|+..++|++|++||.|++||.+.-+ .+..+..+. -+.++.|
T Consensus 188 ~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 188 ATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred EEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence 777 5889999999987776667778999999999999999999999999999999998644 444554433 4899999
Q ss_pred eCCC-CEEEEEEcCCeEEEEECCCC-----------------------------eEEEEEeCCCCCEEEEEEcCCCCEEE
Q 003177 696 QPRL-GRILAAAIENYISILDVETQ-----------------------------VCRLKLQGHKNQVHSVCWNTSGEYLA 745 (842)
Q Consensus 696 sp~g-~~l~~~s~dg~I~IwDl~t~-----------------------------~~~~~l~~h~~~V~sl~~spdg~~La 745 (842)
+|.. ..+++++.|..|.+|....- ..+.++..|...|.+++|+.-..+++
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiF 346 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIF 346 (370)
T ss_pred cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeE
Confidence 9954 56778889999998854311 01335667999999999998776655
Q ss_pred E-Ee-CCeEEEEEcCC
Q 003177 746 S-VS-DELVRVWSIGS 759 (842)
Q Consensus 746 s-gs-Dg~I~IwDl~s 759 (842)
+ -+ ||.+.|=.+..
T Consensus 347 ASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 347 ASLSYDGRVIISSVPR 362 (370)
T ss_pred EEeccCceEEeecCCh
Confidence 4 45 99998877654
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=7e-15 Score=157.12 Aligned_cols=194 Identities=23% Similarity=0.257 Sum_probs=154.3
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEee-
Q 003177 564 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT- 642 (842)
Q Consensus 564 ~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~- 642 (842)
.+++|+.+|..|++|+.||++|||+......+.....|...|.++.|+||+++|++.+.| ..+||+++++.. +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence 689999999999999999999999988888888888899999999999999999999999 899999998743 33222
Q ss_pred -cCccceEEEEEcCCC---C-cEEEEEeCCCcEEEEECCCCce------eeEEeecCCeeEEEEeCCCCEEEEEEcCCeE
Q 003177 643 -GHSTTVMSLDFHPSK---E-DLLCSCDNNSEIRYWSINNGSC------AGVFKCQSGATQMRFQPRLGRILAAAIENYI 711 (842)
Q Consensus 643 -~h~~~V~sl~fspdg---~-~llasgs~Dg~I~vwDl~t~~~------i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I 711 (842)
........+.|+.++ . ++++.....+.|+.||+...+- ...+.....|++++.+.+|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 233445667777664 2 2333334456677777643221 2222235679999999999999999999999
Q ss_pred EEEECCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 003177 712 SILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 759 (842)
Q Consensus 712 ~IwDl~t~~~~~~l~-~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s 759 (842)
.||+..+-+.+...+ .|...|+.+.|+||.+++++.+ |..+.|..+.-
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999887776554 5999999999999999999977 88888887754
No 206
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=8.2e-14 Score=146.39 Aligned_cols=288 Identities=13% Similarity=0.128 Sum_probs=213.9
Q ss_pred ccCCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEe-cCCCCCeEEEEEcCCCCEEEEEEC
Q 003177 502 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGH 580 (842)
Q Consensus 502 ~~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l-~gH~~~V~sv~fSpdg~~Lasgs~ 580 (842)
+....+...++|+++|+.|..+++|........ .. -+.+... ..|...|.|++|...+++|++|..
T Consensus 59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~----------k~---~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVR----------KT---PKPIGVMEHPHRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred cceeeeccCCeEEeecCCcceeeeechHHHHhh----------cC---CCCceeccCccccceEEEEEccCCeeEecCCC
Confidence 445556666899999999999999965433111 01 1123333 346689999999999999999999
Q ss_pred CCcEEEEecCCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee--eEeecCccceEEEEEcCC
Q 003177 581 DKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPS 656 (842)
Q Consensus 581 Dg~I~vwd~~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i--~~~~~h~~~V~sl~fspd 656 (842)
+++|.+.|+++.+.+..+.. ..+.|+.+..+|-.+.|++.+.+|.|.+||.+.....+ ............+.|+|.
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 99999999999888877742 23489999999999999999999999999998654322 223334566788999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCce-eeEEe----e---cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 003177 657 KEDLLCSCDNNSEIRYWSINNGSC-AGVFK----C---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH 728 (842)
Q Consensus 657 g~~llasgs~Dg~I~vwDl~t~~~-i~~~~----~---~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h 728 (842)
...+|++.+..+-+.+||++.... +.... . ......+.|+|.|+.+++.-....-.+||+.+..+...-..|
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence 999999999999999999986432 11111 1 223467899999999998887777788998885544332233
Q ss_pred CC-------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC--------------------ceeEEEeecCCCceEEEE
Q 003177 729 KN-------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK--------------------GECIHELSCTGNKFHSCV 780 (842)
Q Consensus 729 ~~-------~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~--------------------~~~i~~~~~~~~~I~sv~ 780 (842)
.. .+.+++|..|- -+++|+ +-.|++|.+..... ...+..+++|...+..+.
T Consensus 286 N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred CCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 32 46677886544 488888 55899999864210 123456788999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECC
Q 003177 781 FHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 781 ~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
|+|....|++.+-...++||.-.
T Consensus 365 F~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 365 FSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ecCCcceEeccchhhheeccccc
Confidence 99999999999999999999743
No 207
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.61 E-value=1.5e-15 Score=172.12 Aligned_cols=269 Identities=18% Similarity=0.205 Sum_probs=203.9
Q ss_pred CCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCc
Q 003177 504 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 583 (842)
Q Consensus 504 ~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~ 583 (842)
-..++...+++.+|+.|..+++|...+. .+...++||.+.|+.++.+.+..++|+++.|..
T Consensus 195 ca~fDrtg~~Iitgsdd~lvKiwS~et~-------------------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 195 CAIFDRTGRYIITGSDDRLVKIWSMETA-------------------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred eeeeccccceEeecCccceeeeeeccch-------------------hhhccCCCCccccchhccchhhhhhhhcccCce
Confidence 3446667789999999999999965443 235678999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEee------cCccceEEEEEcCCC
Q 003177 584 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSK 657 (842)
Q Consensus 584 I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~------~h~~~V~sl~fspdg 657 (842)
|++|.+.++.++..+.+|++.|++|+|+|-. +.+.||++++||.+- ....+. .....+.++-|..++
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~---~~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL---EPRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc---cccccCCCCCCcccccceeeeeccccc
Confidence 9999999999999999999999999999953 778999999999871 111111 122445666666665
Q ss_pred CcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCC-CCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEE
Q 003177 658 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 736 (842)
Q Consensus 658 ~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~-g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~ 736 (842)
. -+.+++.|++-..|.+....+.. ..+.-+.++.+ ..+.+++-.+-.+.+|++.++...+.+.+|...+..+.
T Consensus 329 ~-~f~Tgs~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd 402 (1113)
T KOG0644|consen 329 D-RFLTGSRDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLD 402 (1113)
T ss_pred c-ccccccCCcccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeee
Confidence 5 45589999988888765322111 00111111111 13455666678899999999999999999999999999
Q ss_pred EcCCCCEEEE-Ee-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 003177 737 WNTSGEYLAS-VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT 807 (842)
Q Consensus 737 ~spdg~~Las-gs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~ 807 (842)
++|-+..++- ++ ||...|||+..+. .+.........+....|+++|..++....-|.++|+....++.
T Consensus 403 ~Hpfn~ri~msag~dgst~iwdi~eg~---pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 403 VHPFNPRIAMSAGYDGSTIIWDIWEGI---PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred ecCCCcHhhhhccCCCceEeeecccCC---cceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 9997765554 44 9999999999884 3433334467788899999999999998889999998765543
No 208
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.61 E-value=1.1e-13 Score=152.77 Aligned_cols=237 Identities=15% Similarity=0.230 Sum_probs=171.3
Q ss_pred CCCCEEEE--EECCCcEEEEecCC-CeE----EEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc-----
Q 003177 570 PDGKLLAT--GGHDKKAVLWCTES-FTV----KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY----- 636 (842)
Q Consensus 570 pdg~~Las--gs~Dg~I~vwd~~t-~~~----~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~t~~~----- 636 (842)
.+.+++|+ ++..|.|-||++.. |++ +-.+ .....|+++.|.| |...|+++++||.|++|.+..+..
T Consensus 589 an~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~ 667 (1012)
T KOG1445|consen 589 ANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM 667 (1012)
T ss_pred eccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC
Confidence 34555554 45568999999864 222 1222 2445699999999 788999999999999999876542
Q ss_pred -eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEE
Q 003177 637 -SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISIL 714 (842)
Q Consensus 637 -~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~Iw 714 (842)
+...+..|...|+++.|+|--..+|++++.|-+|++||+.+++....+. +.+.|..++|+|+|+.+++.+.||+|++|
T Consensus 668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy 747 (1012)
T KOG1445|consen 668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVY 747 (1012)
T ss_pred CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEe
Confidence 3467889999999999999888899999999999999999988766665 56779999999999999999999999999
Q ss_pred ECCCCe-EEEEEeCC-CCCEEEEEEcCCCCEEEEEe-CC----eEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCC
Q 003177 715 DVETQV-CRLKLQGH-KNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFP 786 (842)
Q Consensus 715 Dl~t~~-~~~~l~~h-~~~V~sl~~spdg~~Lasgs-Dg----~I~IwDl~s~~~~~~i~~~~~-~~~~I~sv~~spdg~ 786 (842)
+.++++ ++..-.+. ...--.|.|.-||+++++.+ |. .|.+||..+-.. ..+.+... ....+.--.+.+|..
T Consensus 748 ~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lDvaps~LvP~YD~Ds~ 826 (1012)
T KOG1445|consen 748 EPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLYTQVLDVAPSPLVPHYDYDSN 826 (1012)
T ss_pred CCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-CcceeeeecccCccccccccCCCc
Confidence 998774 34333321 12334678888999988876 54 688998766431 12222111 111222234566665
Q ss_pred E-EEEEEcCCeEEEEECCCCeEE
Q 003177 787 S-LLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 787 ~-L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
. +++|-.|..|++|.+-.....
T Consensus 827 ~lfltGKGD~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 827 VLFLTGKGDRFVNMYEVIYESPY 849 (1012)
T ss_pred eEEEecCCCceEEEEEecCCCce
Confidence 5 445556779999998665543
No 209
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=1.6e-12 Score=134.65 Aligned_cols=230 Identities=15% Similarity=0.252 Sum_probs=164.3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCC--eEEEEEcCCCCEEE-EEeCC------CeEEEEEcCC
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--ITDVRFSPSLSRLA-TSSAD------RTVRVWDTEN 633 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~--I~~l~fspdg~~La-tgs~D------g~I~IWDl~t 633 (842)
..+++|+-|...+++|..+| .+||+++..+.......+.+. +..+-| -.++|+ +|+.+ ..|.|||-.
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~- 83 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL- 83 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc-
Confidence 45599999999999887665 899999875554333323332 223333 234554 33333 479999943
Q ss_pred CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCceeeEEee---cCCeeEEEEeCCCCEEEEEE-cC
Q 003177 634 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC---QSGATQMRFQPRLGRILAAA-IE 708 (842)
Q Consensus 634 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~~~~---~~~i~~v~~sp~g~~l~~~s-~d 708 (842)
.+.++.++. ...+|.+|.+.++ .+++.- .+.|+||... +.+.++.+.. +.+..+++-+.....|+.-+ .-
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~--riVvvl--~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD--RIVVVL--ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC--eEEEEe--cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 344455544 6788999999976 244332 7899999987 5566666654 34444444444434444433 35
Q ss_pred CeEEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeec--CCCceEEEEEe
Q 003177 709 NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSC--TGNKFHSCVFH 782 (842)
Q Consensus 709 g~I~IwDl~t~~~--~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~--~~~~I~sv~~s 782 (842)
|.|.|.|+...+. ...+.+|.+.|.|++.+-+|..||+++ .| .|+|||..++ ..+.++.. ....|.+++|+
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeC
Confidence 9999999987655 477889999999999999999999999 66 6899999998 55555543 24579999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCC
Q 003177 783 PTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 783 pdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
|+..+|++++..|+|+||.++.
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeec
Confidence 9999999999999999998865
No 210
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.6e-13 Score=156.27 Aligned_cols=274 Identities=20% Similarity=0.217 Sum_probs=194.8
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCC---CEEEEEeCCCeEEEEEcCCCCceee
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENPDYSLR 639 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg---~~Latgs~Dg~I~IWDl~t~~~~i~ 639 (842)
-..-.||+|+++++... +..|.||...++.++..+.+|..+++.+.+.|.. .++++++.||+|++||...+.. ++
T Consensus 19 ~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L-lk 96 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL-LK 96 (792)
T ss_pred ecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE-EE
Confidence 34457899999888765 4689999999999999999999999999998854 4678999999999999987653 55
Q ss_pred EeecCccceEEEEEcCC---CCcEEEEEeCCCcE-EEEECCCCceeeEEe-------------ecCCeeEEEEeCCCCEE
Q 003177 640 TFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEI-RYWSINNGSCAGVFK-------------CQSGATQMRFQPRLGRI 702 (842)
Q Consensus 640 ~~~~h~~~V~sl~fspd---g~~llasgs~Dg~I-~vwDl~t~~~i~~~~-------------~~~~i~~v~~sp~g~~l 702 (842)
++..+ .+|..+.+.|. ....+..+..|..+ ........+....+. ....-.++.+++.+. +
T Consensus 97 t~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge-~ 174 (792)
T KOG1963|consen 97 TFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE-F 174 (792)
T ss_pred EEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce-E
Confidence 55433 33444443221 11111112112111 111111111111110 011135566666644 4
Q ss_pred EEEEcCCeEEEEECCCCeEEEE----EeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC-CCCceeEEEeecCCCce
Q 003177 703 LAAAIENYISILDVETQVCRLK----LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS-GSKGECIHELSCTGNKF 776 (842)
Q Consensus 703 ~~~s~dg~I~IwDl~t~~~~~~----l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s-~~~~~~i~~~~~~~~~I 776 (842)
.....+..+.+|+..+...... -..|...+++.+++|++++++++. ||.|.+|.--. .......+.+.=|...|
T Consensus 175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V 254 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV 254 (792)
T ss_pred EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence 4555567788888876541111 123666789999999999999999 99999997543 22334556677788999
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 777 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 777 ~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
.+++|+++|.+|++||..+.+.+|.+.+++..-+..-.++|..+.++||+.+.+....|+.|.+
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence 9999999999999999999999999999997777888999999999999999999999998876
No 211
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.7e-13 Score=155.39 Aligned_cols=235 Identities=14% Similarity=0.061 Sum_probs=160.2
Q ss_pred CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeeEeecCccceEEEEEcCCCC
Q 003177 582 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 658 (842)
Q Consensus 582 g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~ 658 (842)
..|.++|.+ +.....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.++.. ..+....+.+.+..|+|||+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 467777764 44444555678889999999999999887753 3599999987653 33333445667899999999
Q ss_pred cEEEEEeCCCcEEEE--ECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEc-CCeEEE--EECCCCeEEEEEeCCCCCEE
Q 003177 659 DLLCSCDNNSEIRYW--SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISI--LDVETQVCRLKLQGHKNQVH 733 (842)
Q Consensus 659 ~llasgs~Dg~I~vw--Dl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~-dg~I~I--wDl~t~~~~~~l~~h~~~V~ 733 (842)
.++++.+.+|...+| |+..+................|+|+|+.++.++. ++...| +++.++...... .+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 888888878875555 4554543332223334567889999999887665 344444 455555432222 2233345
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 003177 734 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 806 (842)
Q Consensus 734 sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg---~I~Iwdl~~~~ 806 (842)
...|+|||++|+..+ ++ .|++||+.++.. ..+.. ......+.|+|+|+.|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 688999999998776 33 699999987632 12222 22346789999999999888665 57777885544
Q ss_pred EEEEccCCCCeeEEEEeCC
Q 003177 807 TLTLSAHDKLVSSLAASTV 825 (842)
Q Consensus 807 ~~~~~~h~~~V~sla~spd 825 (842)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 4456567788888899873
No 212
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=1.6e-11 Score=136.86 Aligned_cols=262 Identities=12% Similarity=0.125 Sum_probs=183.2
Q ss_pred CCeEEEEEcCCCCEEEEEEC----CCcEEEEecCCC--e--EEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEc
Q 003177 561 SKVESCHFSPDGKLLATGGH----DKKAVLWCTESF--T--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT 631 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~----Dg~I~vwd~~t~--~--~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl 631 (842)
.....++++|++++|+++.. ++.|..|++... . .+............++++|++++|+++.. +|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34567899999999999877 468999987653 3 33444434456678999999999999885 899999999
Q ss_pred CCCCceeeE--eec-----------CccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc--eee----EEeecCCeeE
Q 003177 632 ENPDYSLRT--FTG-----------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAG----VFKCQSGATQ 692 (842)
Q Consensus 632 ~t~~~~i~~--~~~-----------h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~--~i~----~~~~~~~i~~ 692 (842)
......... ... ......++.|+|++++++++.-....|++|++.... ... .+....+...
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 875432221 111 224578999999999888776666789999997654 322 2233567899
Q ss_pred EEEeCCCCEEEEEEc-CCeEEEEECC--CCe--EEEEEeCC------CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcC-
Q 003177 693 MRFQPRLGRILAAAI-ENYISILDVE--TQV--CRLKLQGH------KNQVHSVCWNTSGEYLASVS--DELVRVWSIG- 758 (842)
Q Consensus 693 v~~sp~g~~l~~~s~-dg~I~IwDl~--t~~--~~~~l~~h------~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~- 758 (842)
+.|+|+++++++..+ ++.|.+|++. ++. .+..+... ......|+++|||++|+++. ++.|.+|++.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 999999999888776 5789999888 442 22222211 12578999999999999887 7799999994
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEC--CCCeEEEEc--cCCCCeeEEEE
Q 003177 759 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNM--TENKTLTLS--AHDKLVSSLAA 822 (842)
Q Consensus 759 s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d-g~I~Iwdl--~~~~~~~~~--~h~~~V~sla~ 822 (842)
.......+..+.........++++|+|++|+++..+ +.|.+|++ .+|.+.... ..-....||.|
T Consensus 277 ~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 323345666666666778999999999999998855 58888865 577765332 23345666665
No 213
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.3e-13 Score=159.90 Aligned_cols=265 Identities=15% Similarity=0.201 Sum_probs=184.7
Q ss_pred ccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcEEEEecC-----CCeEEEEecc-------CCCCeE
Q 003177 541 SAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTE-----SFTVKSTLEE-------HTQWIT 606 (842)
Q Consensus 541 ~~~~~~g~~~~~i~~l~gH~~~V~sv~fSp--dg~~Lasgs~Dg~I~vwd~~-----t~~~~~~l~~-------h~~~I~ 606 (842)
+|++.++..+..+..-..-...|+.+.+-. |..+|++|+.||.|+||+-. +.+.+..+.+ ..+.=.
T Consensus 1090 vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~ 1169 (1387)
T KOG1517|consen 1090 VWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGL 1169 (1387)
T ss_pred EEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCe
Confidence 344444444433333334456699998876 55689999999999999632 2233333221 111113
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc---eeeE
Q 003177 607 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGV 683 (842)
Q Consensus 607 ~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~---~i~~ 683 (842)
-+.|.....+|++++.-..|+|||.+....+.....+....|+++.-+-....++++|..||.|++||.+... .+..
T Consensus 1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence 4567766667777777889999999986655555556667788888776666789999999999999998643 2333
Q ss_pred Ee-ecC--CeeEEEEeCCCC-EEEEEEcCCeEEEEECCCCeE--EEEEeCCC--C-CEEEEEEcCCCCEEEEEeCCeEEE
Q 003177 684 FK-CQS--GATQMRFQPRLG-RILAAAIENYISILDVETQVC--RLKLQGHK--N-QVHSVCWNTSGEYLASVSDELVRV 754 (842)
Q Consensus 684 ~~-~~~--~i~~v~~sp~g~-~l~~~s~dg~I~IwDl~t~~~--~~~l~~h~--~-~V~sl~~spdg~~LasgsDg~I~I 754 (842)
++ +.. +|..+.+.+.|- .+++|+.+|.|++||++.... ...+..|. + .++++..+++..++++|+.+.|+|
T Consensus 1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikI 1329 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKI 1329 (1387)
T ss_pred ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEE
Confidence 33 233 388889988554 599999999999999997422 22233333 3 589999999999999999999999
Q ss_pred EEcCCCCCceeEEE----eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003177 755 WSIGSGSKGECIHE----LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 806 (842)
Q Consensus 755 wDl~s~~~~~~i~~----~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~ 806 (842)
|++..... ..++. +....+.+.+++|||---.+++|..|.+|.||......
T Consensus 1330 y~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1330 YSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EecChhhh-cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99876422 11211 11123567999999999999999999999999876543
No 214
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=4.3e-13 Score=146.53 Aligned_cols=244 Identities=15% Similarity=0.199 Sum_probs=166.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEE----EEeccCCCCeEEEEEc-----CCCCEEEEEeCCCeEEEEEcC
Q 003177 562 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFS-----PSLSRLATSSADRTVRVWDTE 632 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~----~~l~~h~~~I~~l~fs-----pdg~~Latgs~Dg~I~IWDl~ 632 (842)
.+....++-.|++|+..-. ..+++|+...+..+ ..........+|-+|. +++--|+.+-..|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 4555666667777766543 46888887643221 1111112223444452 345567888888889998876
Q ss_pred CCCceeeEe----ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcC
Q 003177 633 NPDYSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 708 (842)
Q Consensus 633 t~~~~i~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~d 708 (842)
..+. .+.+ .-....|+|+.|-|.++.+++.+-.+|.+++||.+ +.+.....+....+++..+.+....
T Consensus 204 ~~~~-sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~-------~~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 NFEV-SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE-------IVCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred hhHH-HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc-------ccccCCCCcccccCCCCeeEEeeee
Confidence 5221 1111 11347899999999999999899999999999972 1111111222223344444433221
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003177 709 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 787 (842)
Q Consensus 709 g~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~ 787 (842)
+. .+..++..+.--.+.|..++|+|||++||+.+ ||.++|||+.+. +.+..++.--+...||+|+|||++
T Consensus 276 sk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 SK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred cc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence 11 11133444443456899999999999999999 999999999876 444455555678999999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEe
Q 003177 788 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 823 (842)
Q Consensus 788 L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~s 823 (842)
|++|+.|.-|.||.+..++++ +-.+|...|+.|+|.
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999998 667999999999998
No 215
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.57 E-value=2.7e-14 Score=155.34 Aligned_cols=207 Identities=13% Similarity=0.129 Sum_probs=165.6
Q ss_pred CEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEE
Q 003177 573 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 652 (842)
Q Consensus 573 ~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~ 652 (842)
..|+.++.||.+.|.+ +.++....+..|.+.|.|-.|+|||.-|+|+++||.|++|.-.. ....++.....+|.|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--MLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--MLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--hHHHHHhhcCceeEEEE
Confidence 4688889999999987 56788888999999999999999999999999999999998653 22334555678899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCC-ceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCC
Q 003177 653 FHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 731 (842)
Q Consensus 653 fspdg~~llasgs~Dg~I~vwDl~t~-~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~ 731 (842)
|.|+.+.++++.+ +.+.|=.+... +.++--.+.+-|.++.|++..+.+++|++|-..+|||.. |..++.-..|..+
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 9999998887664 45555555543 344444456668999999999999999999999999976 4566666779999
Q ss_pred EEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003177 732 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 800 (842)
Q Consensus 732 V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iw 800 (842)
|++++|.|+ +.++.++-.++++=. ...+.|..++|++||..+++|+..|.|.+-
T Consensus 230 ITSva~npd-~~~~v~S~nt~R~~~--------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYNTARFSS--------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeeccc-cceeeeeeeeeeecC--------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 999999999 666667666666221 235678899999999999999999865543
No 216
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=2.7e-13 Score=140.29 Aligned_cols=227 Identities=18% Similarity=0.285 Sum_probs=176.5
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 003177 598 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 675 (842)
Q Consensus 598 l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~--~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl 675 (842)
+.....+|+|.+|++|...+|++.....|.||...... ....++..|...|++|+|.|..++++ +|+.|..-+||..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCcccccc
Confidence 33455789999999999999999999999999987655 45678899999999999999977554 9999999999999
Q ss_pred C-CCc---eeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE----EEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003177 676 N-NGS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC----RLKLQGHKNQVHSVCWNTSGEYLASV 747 (842)
Q Consensus 676 ~-t~~---~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~----~~~l~~h~~~V~sl~~spdg~~Lasg 747 (842)
. .++ .+..++++...+++.|+|.++.|++++....|.||-.+...- ...-+.+.+.|+++.|+|++-+|++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4 333 234455678899999999999999999999999887764322 22334577889999999999999999
Q ss_pred e-CCeEEEEEcCCC-----C----------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEE
Q 003177 748 S-DELVRVWSIGSG-----S----------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--TLT 809 (842)
Q Consensus 748 s-Dg~I~IwDl~s~-----~----------~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~--~~~ 809 (842)
+ |+..+||..--. . ....+.++....+.+..+.|+|+|..|+..+.|..|.+-|..... ...
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 9 999999875211 0 012233344567889999999999999999999999999987765 223
Q ss_pred EccCCCCeeEEEEeCC
Q 003177 810 LSAHDKLVSSLAASTV 825 (842)
Q Consensus 810 ~~~h~~~V~sla~spd 825 (842)
.....-+..++.|-.+
T Consensus 245 ~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISE 260 (361)
T ss_pred hhhccCCceeeEeecC
Confidence 3323355666666543
No 217
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.57 E-value=4.1e-13 Score=142.69 Aligned_cols=290 Identities=13% Similarity=0.123 Sum_probs=190.5
Q ss_pred EEecCCCCcccccCCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC
Q 003177 491 MFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP 570 (842)
Q Consensus 491 ~~~~~~~~~~~~~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSp 570 (842)
..+.-..+..++....+.+...++++|+.++.+-+|...+.... ....-.......+...+++++|...|..++|++
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~---~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF---DADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc---cccchhhhCccceEEEEEecccccchhhhhccC
Confidence 33344446666677777777799999999999999977652211 000000111234566788999999999999999
Q ss_pred CCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCcc-ceE
Q 003177 571 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM 649 (842)
Q Consensus 571 dg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~-~V~ 649 (842)
|+.++++++.|+.+++||+..|.....+.+|...|..++|.|-+.++++-+.|...+++.+..... ...|.. .+.
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~----~~~~~~~~m~ 209 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV----IKRHGLDIMP 209 (434)
T ss_pred CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee----eeeeeeeEee
Confidence 999999999999999999999999999999999999999999999999999998777777654221 111111 011
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEc----CC-----eEEEEECCC-C
Q 003177 650 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI----EN-----YISILDVET-Q 719 (842)
Q Consensus 650 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~----dg-----~I~IwDl~t-~ 719 (842)
..++.+. .....++|.=++.+ .-...++|+|+|..+++.+. ++ ..++|+-.. .
T Consensus 210 ~~~~~~~---------e~~s~rLfhDeTlk--------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~ 272 (434)
T KOG1009|consen 210 AKAFNER---------EGKSTRLFHDETLK--------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK 272 (434)
T ss_pred ecccCCC---------CcceeeeeecCchh--------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc
Confidence 1111111 11122222222211 22445677777777766432 12 234554332 2
Q ss_pred eEEEEEeCCCCCEEEEEEcC------------------CCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003177 720 VCRLKLQGHKNQVHSVCWNT------------------SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 781 (842)
Q Consensus 720 ~~~~~l~~h~~~V~sl~~sp------------------dg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~ 781 (842)
++...+.....++..+.|+| -+..++.++.+.|+|||..+.....++. ..|...++.++|
T Consensus 273 rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~--nihy~~iTDiaw 350 (434)
T KOG1009|consen 273 RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVD--NIHYSAITDIAW 350 (434)
T ss_pred CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEe--eeeeeeecceee
Confidence 34444444444444444443 3345667778899999998874333333 346789999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCe
Q 003177 782 HPTFPSLLVIGCYETLELWNMTENK 806 (842)
Q Consensus 782 spdg~~L~sgs~dg~I~Iwdl~~~~ 806 (842)
+++|..|++.+.||...+..++..+
T Consensus 351 s~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 351 SDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred cCCCcEEEEeccCCceEEEEEcchh
Confidence 9999999999999976666655544
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=8.1e-13 Score=151.51 Aligned_cols=223 Identities=17% Similarity=0.174 Sum_probs=152.8
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEE
Q 003177 555 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWD 630 (842)
Q Consensus 555 ~l~gH~~~V~sv~fSpdg~~Lasgs~D---g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWD 630 (842)
.+..+...|.+.+|+|||+.|+.++.+ ..|++||+.+++... +....+.+.+++|+|||+.|+ +.+.+|...||.
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 345677889999999999999887753 359999999887643 333445677899999999887 466788767766
Q ss_pred cCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEEC--CCCceeeEEeecCCeeEEEEeCCCCEEEEEEcC
Q 003177 631 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 708 (842)
Q Consensus 631 l~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl--~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~d 708 (842)
++........+..+...+....|+|||+.+++++..+|...+|.+ .+++...............|+|+|++++..+.+
T Consensus 269 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 269 VNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred EECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 543222345566566667788999999988877665666666654 445433332222334567899999999887765
Q ss_pred C---eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003177 709 N---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVF 781 (842)
Q Consensus 709 g---~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~ 781 (842)
+ .|.+||+.+++...... ......+.|+|||++|+.++ .+ .+++.++. + .....+..+.+.+...+|
T Consensus 349 ~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~w 422 (427)
T PRK02889 349 GGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPSW 422 (427)
T ss_pred CCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCcc
Confidence 4 69999998876543322 23446789999999988877 33 46666663 3 233444445566777777
Q ss_pred eCC
Q 003177 782 HPT 784 (842)
Q Consensus 782 spd 784 (842)
+|-
T Consensus 423 sp~ 425 (427)
T PRK02889 423 GPF 425 (427)
T ss_pred CCC
Confidence 763
No 219
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.7e-13 Score=145.15 Aligned_cols=190 Identities=14% Similarity=0.112 Sum_probs=147.8
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCc-eeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 003177 649 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 727 (842)
Q Consensus 649 ~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~ 727 (842)
.+++|+.+|. .+++++.||++|||+..+.. ......++..|.++.|+||+..|++.+.| ..+||+++++.++.....
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6789998876 77899999999999966544 44555678899999999999999999999 999999999976665543
Q ss_pred --CCCCEEEEEEcCCC---CEEEEEe---CCeEEEEEcCCCCCce--eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003177 728 --HKNQVHSVCWNTSG---EYLASVS---DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 797 (842)
Q Consensus 728 --h~~~V~sl~~spdg---~~Lasgs---Dg~I~IwDl~s~~~~~--~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I 797 (842)
.+..+..+.|+.|+ .+++.+. .+.|+.||+....... ...........|++++++++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 23345677787776 3333333 4577777775443211 222223345689999999999999999999999
Q ss_pred EEEECCCCeEEE--EccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 798 ELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 798 ~Iwdl~~~~~~~--~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
.|++..+-+.+. ...|...|+.+.|+||.+++++.+.|....|
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 999999988873 4589999999999999999999888877665
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=3.6e-13 Score=142.61 Aligned_cols=261 Identities=15% Similarity=0.201 Sum_probs=199.0
Q ss_pred CCCCeEEEEEcCCCC--EEEEEECCCcEEEEecCCCeEEEE------eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 559 STSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKST------LEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 559 H~~~V~sv~fSpdg~--~Lasgs~Dg~I~vwd~~t~~~~~~------l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
-...|+.++|..|++ .|...+.|..+..+++....+... .......|..++.. ...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 344577888877655 344443666677777666554433 33455667777664 34788889999999999
Q ss_pred cCCCC---ceeeEeecCccceEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCceeeEEee----------cCCeeEEEE
Q 003177 631 TENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKC----------QSGATQMRF 695 (842)
Q Consensus 631 l~t~~---~~i~~~~~h~~~V~sl~fspdg~~llasgs~D--g~I~vwDl~t~~~i~~~~~----------~~~i~~v~~ 695 (842)
...+. .++..+..+ ..+..+.-++...+++++|+.. ..+.+||++..+.+..-+. +--++.+.|
T Consensus 132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 88443 122333323 5577788888888899999998 8999999998866654432 223678889
Q ss_pred eCC--CCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE-ee
Q 003177 696 QPR--LGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE-LS 770 (842)
Q Consensus 696 sp~--g~~l~~~s~dg~I~IwDl~t~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~-~~ 770 (842)
.+. ...|++++.-+.+++||.+.+ +++..+.-...+|+++...|++++|+++. -+.+..||++.+ ..+.. +.
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~---kl~g~~~k 287 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG---KLLGCGLK 287 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc---eeeccccC
Confidence 887 788999999999999999976 67888887888999999999999999999 899999999988 44443 77
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCC
Q 003177 771 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 825 (842)
Q Consensus 771 ~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spd 825 (842)
+..+.|+++..+|.+++|++++-|..|+|+|+.+.+++.-..-...+++|-+.++
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 7789999999999999999999999999999999777644444556677766543
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.3e-12 Score=150.16 Aligned_cols=221 Identities=19% Similarity=0.188 Sum_probs=156.1
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCC--eEE
Q 003177 554 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR 627 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~Lasgs~D---g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg--~I~ 627 (842)
+.+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++... +..+.+...+++|+|||+.|+ +.+.+| .|+
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 3455677789999999999999988743 469999998876543 334455566889999999876 445555 599
Q ss_pred EEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEE
Q 003177 628 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 705 (842)
Q Consensus 628 IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~--I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~ 705 (842)
+||+.++. +..+..+......++|+|+|..++++...+|. |+++|+.+++..............+|+|++++++..
T Consensus 276 ~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 276 VMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 99998765 45555566666789999999988877666665 777787776654433333345578999999999887
Q ss_pred EcCC---eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C---CeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003177 706 AIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSCTGNKFHS 778 (842)
Q Consensus 706 s~dg---~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D---g~I~IwDl~s~~~~~~i~~~~~~~~~I~s 778 (842)
+.++ .|.+||+.++... .+. +........|+|||++|+..+ + ..|+++++... ....+..+.+.+..
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~~~ 427 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEVRE 427 (433)
T ss_pred ECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCCCC
Confidence 6543 6999999887655 333 333455779999999887766 2 26888887543 33444444556666
Q ss_pred EEEeC
Q 003177 779 CVFHP 783 (842)
Q Consensus 779 v~~sp 783 (842)
.+|+|
T Consensus 428 p~wsp 432 (433)
T PRK04922 428 PAWSP 432 (433)
T ss_pred CccCC
Confidence 77776
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.2e-12 Score=150.05 Aligned_cols=220 Identities=17% Similarity=0.165 Sum_probs=154.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCC--eEEEE
Q 003177 556 IPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADR--TVRVW 629 (842)
Q Consensus 556 l~gH~~~V~sv~fSpdg~~Lasgs~---Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg--~I~IW 629 (842)
+..+...+.+.+|||||+.|+..+. +..|++|++.+++... +....+.+..++|+|||+.|+.. +.+| .|++|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 4456678999999999999887643 3579999998876443 22333445678999999988865 4444 58899
Q ss_pred EcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEc
Q 003177 630 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 707 (842)
Q Consensus 630 Dl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~--I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~ 707 (842)
|+.++. ...+..+...+....|+|+|+.++++...++. |+++|+.+++...............|+|+++.++..+.
T Consensus 273 d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 273 DLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred ECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 998754 34455555678899999999988777665554 55557776655443333344567899999999988765
Q ss_pred C---CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003177 708 E---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCV 780 (842)
Q Consensus 708 d---g~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 780 (842)
+ ..|.+||+.++.... +.. ........|+|||++|+.++ ++ .+.++++... ....+..+.+.+...+
T Consensus 351 ~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~----~~~~l~~~~~~~~~p~ 424 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR----FKARLPATDGQVKFPA 424 (429)
T ss_pred cCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC----CeEECccCCCCcCCcc
Confidence 4 368899998876443 332 12345678999999998887 54 4777787443 3455556677788888
Q ss_pred EeCC
Q 003177 781 FHPT 784 (842)
Q Consensus 781 ~spd 784 (842)
|+|-
T Consensus 425 Wsp~ 428 (429)
T PRK03629 425 WSPY 428 (429)
T ss_pred cCCC
Confidence 8873
No 223
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.54 E-value=4.9e-11 Score=132.97 Aligned_cols=267 Identities=14% Similarity=0.180 Sum_probs=182.9
Q ss_pred EEEEECC----CcEEEEec--CCCeEE--EEeccCCCCeEEEEEcCCCCEEEEEeC----CCeEEEEEcCCCCcee---e
Q 003177 575 LATGGHD----KKAVLWCT--ESFTVK--STLEEHTQWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSL---R 639 (842)
Q Consensus 575 Lasgs~D----g~I~vwd~--~t~~~~--~~l~~h~~~I~~l~fspdg~~Latgs~----Dg~I~IWDl~t~~~~i---~ 639 (842)
+++|+.+ +.|++|++ ++++.. ..+ ........++++|++++|+++.. ++.|..|++......+ .
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4566666 68888877 455443 222 23455678999999999999887 4699999988652112 2
Q ss_pred EeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CceeeE---Ee-----------ecCCeeEEEEeCCCCEEEE
Q 003177 640 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV---FK-----------CQSGATQMRFQPRLGRILA 704 (842)
Q Consensus 640 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~---~~-----------~~~~i~~v~~sp~g~~l~~ 704 (842)
...........++++|++..++++...+|.|.++++.. +..... +. ......++.++|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 22223455678999999998888888899999999987 443332 21 1245789999999999988
Q ss_pred EEc-CCeEEEEECCCCe--E--EEEEe-CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecC---
Q 003177 705 AAI-ENYISILDVETQV--C--RLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT--- 772 (842)
Q Consensus 705 ~s~-dg~I~IwDl~t~~--~--~~~l~-~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~--- 772 (842)
... ...|.+|++.... . ...+. ......+.++|+|+++++++.. ++.|.+|++... .....+..+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 876 4689999987653 2 22222 3455788999999999998877 889999999822 122333333321
Q ss_pred ---CCceEEEEEeCCCCEEEEEEcC-CeEEEEECC--CCeEE---EEccCCCCeeEEEEeCCCCEEEEEe-CCCcEEEcC
Q 003177 773 ---GNKFHSCVFHPTFPSLLVIGCY-ETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 842 (842)
Q Consensus 773 ---~~~I~sv~~spdg~~L~sgs~d-g~I~Iwdl~--~~~~~---~~~~h~~~V~sla~spdg~~Lasgs-~DG~V~IWd 842 (842)
......++++|+|++|+++... +.|.+|++. ++++. .+.........++++|+|++|++++ .++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1257889999999999988754 589999983 34443 2333345589999999999998887 556888774
No 224
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.54 E-value=2.4e-12 Score=147.15 Aligned_cols=232 Identities=16% Similarity=0.126 Sum_probs=162.5
Q ss_pred CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeeEeecCccceEEEEEcCCCC
Q 003177 582 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 658 (842)
Q Consensus 582 g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~ 658 (842)
..|.++|..... ...+..+...+.+.+|+||+++|+.++.+ ..|++||+.++.. ..+..+...+.+++|+|+++
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 368888876443 44455677789999999999999988754 4799999987643 33444556677899999999
Q ss_pred cEEEEEeCCC--cEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEEEEEeCCCCCEE
Q 003177 659 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 733 (842)
Q Consensus 659 ~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~d-g--~I~IwDl~t~~~~~~l~~h~~~V~ 733 (842)
.++++.+.++ .|++||+.++................|+|+++.|+.++.. + .|+++|+.+++.. .+..+...+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 8887776554 5999999887655444433445577899999988877653 3 6888898877543 3333556677
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 003177 734 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 806 (842)
Q Consensus 734 sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg---~I~Iwdl~~~~ 806 (842)
.+.|+|+|++|+.++ ++ .|.+||+.++. ...+.. ........|+|++.+|++.+.++ .+++++.....
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~----~~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG----ERVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCC----eEEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 889999999998887 44 78999988752 122221 12234568999999998887765 56777765554
Q ss_pred EEEEccCCCCeeEEEE
Q 003177 807 TLTLSAHDKLVSSLAA 822 (842)
Q Consensus 807 ~~~~~~h~~~V~sla~ 822 (842)
...+..+.+.+..++|
T Consensus 401 ~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 401 RARLPLGNGDVREPAW 416 (417)
T ss_pred eeECCCCCCCcCCCCC
Confidence 4445444555555555
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3.9e-12 Score=146.31 Aligned_cols=221 Identities=13% Similarity=0.121 Sum_probs=157.3
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCe--EE
Q 003177 554 QLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VR 627 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~Lasgs~---Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~--I~ 627 (842)
+.+..|...|.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+|||+.|+ +.+.++. |+
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 445678889999999999999888764 468999999887654 4555667788999999999876 4555554 77
Q ss_pred EEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEE
Q 003177 628 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 705 (842)
Q Consensus 628 IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~ 705 (842)
+||+.++. ...+..+.....+..|+|+|+.++++...+| .|++||+..++..........+....|+|+++.++..
T Consensus 274 ~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence 77887654 4556666666778999999998876665544 6888898876655444444556778999999999887
Q ss_pred EcC---CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-----CeEEEEEcCCCCCceeEEEeecCCCc
Q 003177 706 AIE---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-----ELVRVWSIGSGSKGECIHELSCTGNK 775 (842)
Q Consensus 706 s~d---g~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-----g~I~IwDl~s~~~~~~i~~~~~~~~~ 775 (842)
..+ ..|.+||+.++.. ..+. ....+..+.|+|||+.|+..+ . ..|+++|+..+. ...+. ....
T Consensus 352 ~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~----~~~l~-~~~~ 424 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN----EREVP-TPGD 424 (435)
T ss_pred EcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc----eEEcc-CCCC
Confidence 654 3688899866543 2332 233567889999999887655 2 257888876542 22333 2334
Q ss_pred eEEEEEeCC
Q 003177 776 FHSCVFHPT 784 (842)
Q Consensus 776 I~sv~~spd 784 (842)
+...+|+|-
T Consensus 425 ~~~p~Wsp~ 433 (435)
T PRK05137 425 ASDPAWSPL 433 (435)
T ss_pred ccCcccCCC
Confidence 566677663
No 226
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4e-12 Score=140.24 Aligned_cols=267 Identities=18% Similarity=0.270 Sum_probs=178.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-----eCC-----CeEEEEEc
Q 003177 562 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-----SAD-----RTVRVWDT 631 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-----s~D-----g~I~IWDl 631 (842)
.+...++|++|+++|.+. +..|+|++..++..+.+...- .++++.|+|.+.+|.|- ..+ -.+.+|++
T Consensus 36 ~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred cceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence 367789999998888765 578999999888655444333 78999999999998762 112 35779999
Q ss_pred CCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeE-------------------
Q 003177 632 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ------------------- 692 (842)
Q Consensus 632 ~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~------------------- 692 (842)
++ ......+......-+++.|+.|.. +++--..+.+.+|++.+.+.+...-+..+|+.
T Consensus 113 et-~~~~s~~q~k~Q~~W~~qfs~dEs--l~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 113 ET-GVQRSQIQKKMQNGWVPQFSIDES--LAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred cc-ceehhheehhhhcCcccccccchh--hhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCC
Confidence 98 433333332222226788887754 22222356778887765432221112222333
Q ss_pred ---------------------------------EEEeCCCCEEEE-EEc-----------CCeEEEEECCCCeEEEEEeC
Q 003177 693 ---------------------------------MRFQPRLGRILA-AAI-----------ENYISILDVETQVCRLKLQG 727 (842)
Q Consensus 693 ---------------------------------v~~sp~g~~l~~-~s~-----------dg~I~IwDl~t~~~~~~l~~ 727 (842)
+.|.+.+.-|++ ++. +..++++++....++..+.
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~- 268 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL- 268 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-
Confidence 344444433222 111 1246666666444444443
Q ss_pred CCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEE
Q 003177 728 HKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWN 801 (842)
Q Consensus 728 h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg---~I~Iwd 801 (842)
..++|++++|+++++-++++. -.++.|||++.. .+.. ...++-+++-|+|.|++|+.+|.++ .|.|||
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----EeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence 468999999999998777655 679999998653 4443 4577889999999999999998864 899999
Q ss_pred CCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeC------CCcEEEcC
Q 003177 802 MTENKTLTLSAHDKLVSSLAASTVNGMVASASH------DKCVKIWK 842 (842)
Q Consensus 802 l~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~------DG~V~IWd 842 (842)
+.+.+++...... .-+-+.|+|||++|+|++. |+.++||+
T Consensus 343 v~n~K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 343 VPNRKLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred ccchhhccccccC-CceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 9998777433222 2355789999999998874 67888885
No 227
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.52 E-value=1.3e-12 Score=136.04 Aligned_cols=277 Identities=17% Similarity=0.307 Sum_probs=189.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCe-----EEEEeccCC------------CCeEEEEEcCCC--CEEEEE
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLATS 620 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~-----~~~~l~~h~------------~~I~~l~fspdg--~~Latg 620 (842)
.+-|.+|.|..+|.+||||..+|.|.+|.-+... ....+..|. ..|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3558999999999999999999999999543221 223333333 458889998864 457777
Q ss_pred eCCCeEEEEEcCCCCce----------------------------------eeE-eecCccceEEEEEcCCCCcEEEEEe
Q 003177 621 SADRTVRVWDTENPDYS----------------------------------LRT-FTGHSTTVMSLDFHPSKEDLLCSCD 665 (842)
Q Consensus 621 s~Dg~I~IWDl~t~~~~----------------------------------i~~-~~~h~~~V~sl~fspdg~~llasgs 665 (842)
+.|.+|++|.+...... .+. -..|...|.+|.++.|+..++ ++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec-
Confidence 89999999988643211 011 124788899999999988665 44
Q ss_pred CCCcEEEEECCCC-ceeeEEee--------cCCeeEEEEeCC-CCEEEEEEcCCeEEEEECCCCeE------EEEE----
Q 003177 666 NNSEIRYWSINNG-SCAGVFKC--------QSGATQMRFQPR-LGRILAAAIENYISILDVETQVC------RLKL---- 725 (842)
Q Consensus 666 ~Dg~I~vwDl~t~-~~i~~~~~--------~~~i~~v~~sp~-g~~l~~~s~dg~I~IwDl~t~~~------~~~l---- 725 (842)
+|-.|.+|+++-- .+...... ..-|++..|+|. .+.++..+..|.|++.|++.... +...
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 4889999998643 23222222 123788999995 45677788889999999984311 1111
Q ss_pred ------eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC------------C---ceEEEEEeCC
Q 003177 726 ------QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------N---KFHSCVFHPT 784 (842)
Q Consensus 726 ------~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~------------~---~I~sv~~spd 784 (842)
..--..|..+.|+++|+|+++-+--+|+|||+.... .++.++..|. . .-..|+|+.+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 111246788999999999999888899999996543 3344433332 1 2356899999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE--EEc--------------------cC-------------CCCeeEEEEeCCCCEE
Q 003177 785 FPSLLVIGCYETLELWNMTENKTL--TLS--------------------AH-------------DKLVSSLAASTVNGMV 829 (842)
Q Consensus 785 g~~L~sgs~dg~I~Iwdl~~~~~~--~~~--------------------~h-------------~~~V~sla~spdg~~L 829 (842)
+.++++|+..+.+++|++..|... ++. +. ...|...+|+|..+.|
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~i 420 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSI 420 (433)
T ss_pred cceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcccee
Confidence 999999999999999996554322 100 00 0123455899999988
Q ss_pred EEEeCCCcEEEc
Q 003177 830 ASASHDKCVKIW 841 (842)
Q Consensus 830 asgs~DG~V~IW 841 (842)
|.+.... ++||
T Consensus 421 a~aatnn-lyif 431 (433)
T KOG1354|consen 421 AVAATNN-LYIF 431 (433)
T ss_pred eeeecCc-eEEe
Confidence 8887654 5554
No 228
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=6.1e-12 Score=144.57 Aligned_cols=234 Identities=16% Similarity=0.050 Sum_probs=164.0
Q ss_pred cEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCc
Q 003177 583 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 659 (842)
Q Consensus 583 ~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~ 659 (842)
.|.++|.+.+.. ..+..+...+....|+|||+.|+..+.+ ..|.+||+.++.. ..+....+.+....|+|+|+.
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence 477788775543 4455677789999999999999877654 3699999987653 333334445667999999998
Q ss_pred EEEEEeCCC--cEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEEeCCCCCEEE
Q 003177 660 LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHS 734 (842)
Q Consensus 660 llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~d---g~I~IwDl~t~~~~~~l~~h~~~V~s 734 (842)
++++.+.+| .|++||+.+++...............|+|+++.++..+.. ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776665 6888899988765544444456678999999988877653 368888888776433222 2233446
Q ss_pred EEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeE
Q 003177 735 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 807 (842)
Q Consensus 735 l~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg---~I~Iwdl~~~~~ 807 (842)
..|+|||++|+..+ ++ .|.+||+.++.. . .+.. ........|+|+|+.|+..+.++ .|+++++..+..
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~---~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-R---ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-E---EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 78999999998876 33 588899887632 2 2221 11223568999999998887653 688888876666
Q ss_pred EEEccCCCCeeEEEEeCC
Q 003177 808 LTLSAHDKLVSSLAASTV 825 (842)
Q Consensus 808 ~~~~~h~~~V~sla~spd 825 (842)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 566566677888888763
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=1.6e-12 Score=142.12 Aligned_cols=169 Identities=18% Similarity=0.262 Sum_probs=130.7
Q ss_pred CCCCEEEEEECCCcEEEEecCCCeEEEEe----ccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCC---------
Q 003177 570 PDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD--------- 635 (842)
Q Consensus 570 pdg~~Lasgs~Dg~I~vwd~~t~~~~~~l----~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~t~~--------- 635 (842)
+++--|++|-..|.|.+.|....+..+.+ .-....|+|+.|.|. ...++++-.+|.+++||.....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 45556778888899999886652222111 123478999999994 4566677789999999764110
Q ss_pred ------------------ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEe
Q 003177 636 ------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQ 696 (842)
Q Consensus 636 ------------------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~s 696 (842)
.++..+.-..+.|..++|+|||. +||+.+.||.++|||..+.+.+..++. -++..|++|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 11112222345788999999877 677889999999999998877665553 4789999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcC
Q 003177 697 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 739 (842)
Q Consensus 697 p~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~sp 739 (842)
|||++|++|++|.-|.||.+...+.+..-.+|+++|..|+|+|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999999997
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.51 E-value=2e-11 Score=136.60 Aligned_cols=263 Identities=10% Similarity=0.053 Sum_probs=172.5
Q ss_pred CEE-EEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEE
Q 003177 573 KLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 651 (842)
Q Consensus 573 ~~L-asgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl 651 (842)
+++ ++-..++.|.|.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+.+. +..+... ....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-v~~i~~G-~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-VATIKVG-GNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-EEEEE-S-SEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-EEEEecC-CCcceE
Confidence 344 4555689999999999999999976655455688999999999999999999999998774 5555533 456889
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec--------CCeeEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEE
Q 003177 652 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQMRFQPRLGRILAAAIE-NYISILDVETQVCR 722 (842)
Q Consensus 652 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~--------~~i~~v~~sp~g~~l~~~s~d-g~I~IwDl~t~~~~ 722 (842)
+++++|+++++++...+.+.++|.++.+.+..+... ..+..+..++....+++.-.| +.|.+.|......+
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 999999999989889999999999999999887642 356778888888877777665 89999998765322
Q ss_pred -EEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec----CCCceEEEEEeCC----------C
Q 003177 723 -LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPT----------F 785 (842)
Q Consensus 723 -~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~----~~~~I~sv~~spd----------g 785 (842)
..............|+|+++|++++. ++.|-++|..++ +.+..+.. |..+...+ .||. +
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~---k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG---KLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLG 239 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT---EEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSS
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccc---eEEEEeeccccccccccccc-cCCCcceEEeecccc
Confidence 23333456778899999999988876 779999999886 33333322 22222221 2222 2
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEE-EccCCCCeeEEEEeCCCCEEEEE----eCCCcEEEcC
Q 003177 786 PSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASA----SHDKCVKIWK 842 (842)
Q Consensus 786 ~~L~sgs~dg~I~Iwdl~~~~~~~-~~~h~~~V~sla~spdg~~Lasg----s~DG~V~IWd 842 (842)
...++.-..+.+.+||..+.+.+. +...... ..+..+|++++|.+. ...+.|.|+|
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 333333334456678888888884 4444444 778889999999988 3446787765
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=5.6e-12 Score=130.63 Aligned_cols=231 Identities=13% Similarity=0.174 Sum_probs=168.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee-eEeecCccceEEEEEcCCCCcEEEEEeCC------CcEEEEECC
Q 003177 604 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSIN 676 (842)
Q Consensus 604 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i-~~~~~h~~~V~sl~fspdg~~llasgs~D------g~I~vwDl~ 676 (842)
...+++|+.|...+++|.++| .+||+++--++.. +.+....-.+..+-|- .+.+...|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999998777 8999987522211 1111111222222232 23444455433 479999988
Q ss_pred CCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECC-CCeEEEEEeCC--CCCEEEEEEcCCCCEEEEEe--CCe
Q 003177 677 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS--DEL 751 (842)
Q Consensus 677 t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~-t~~~~~~l~~h--~~~V~sl~~spdg~~Lasgs--Dg~ 751 (842)
..+++..+....+|..+.+.++ .++.-.++.|+||... +.+.++.+... ...+.+++-..+..+|+.-+ -|.
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 8899999999999999999886 4555567999999987 44555554432 23344444444556666655 789
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEE-EEc--cCCCCeeEEEEeCCCC
Q 003177 752 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLS--AHDKLVSSLAASTVNG 827 (842)
Q Consensus 752 I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg-~I~Iwdl~~~~~~-~~~--~h~~~V~sla~spdg~ 827 (842)
|.|-|+...... ....+..|.+.|.+++++-+|..+++++..| -|+|||..+|+++ .+. .....|.+|+|+|++.
T Consensus 161 vQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999876321 3467788999999999999999999999999 6999999999887 333 3346799999999999
Q ss_pred EEEEEeCCCcEEEc
Q 003177 828 MVASASHDKCVKIW 841 (842)
Q Consensus 828 ~Lasgs~DG~V~IW 841 (842)
+||++|+.|+|+||
T Consensus 240 ~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999999997
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=1.3e-12 Score=138.37 Aligned_cols=237 Identities=16% Similarity=0.171 Sum_probs=184.2
Q ss_pred CCCCeEEEEEcCCC--CEEEEEeCCCeEEEEEcCCCCcee-----eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEE
Q 003177 601 HTQWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYSL-----RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 673 (842)
Q Consensus 601 h~~~I~~l~fspdg--~~Latgs~Dg~I~IWDl~t~~~~i-----~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vw 673 (842)
....|..++|..++ ..|+.++.|..+..+.+......- .........|..+.... ..|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEEEE
Confidence 34567777886654 345555466667777766544311 13344556777777652 256688889999999
Q ss_pred ECCCCc----eeeEEeecCCeeEEEEeCCCCEEEE-EEcC--CeEEEEECCCCeEEEEEeCCC---------CCEEEEEE
Q 003177 674 SINNGS----CAGVFKCQSGATQMRFQPRLGRILA-AAIE--NYISILDVETQVCRLKLQGHK---------NQVHSVCW 737 (842)
Q Consensus 674 Dl~t~~----~i~~~~~~~~i~~v~~sp~g~~l~~-~s~d--g~I~IwDl~t~~~~~~l~~h~---------~~V~sl~~ 737 (842)
..+.+. ....+....++..+.-++...+|++ |+.. +.+.|||++..+.++.-+.-. -+++++.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 998433 4455566677888888886666655 7777 789999999887766544322 25678889
Q ss_pred cCC--CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EEcc
Q 003177 738 NTS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSA 812 (842)
Q Consensus 738 spd--g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~--~~~~ 812 (842)
.+. ...|++++ -+.|++||.+.+. .++..+...+.+++++...|++++|+++...+.+..||++.++.. .+.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 887 78888888 9999999999765 677788888999999999999999999999999999999999988 4778
Q ss_pred CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 813 HDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 813 h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
..+.|++|..+|...+|++|+-|..|+|+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 899999999999999999999999999987
No 233
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=99.49 E-value=1.5e-14 Score=146.01 Aligned_cols=77 Identities=32% Similarity=0.750 Sum_probs=65.4
Q ss_pred CcchHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCCCCCcccCCCCCcchhhHHHHHHHhhhcccc----ccchhhhhhh
Q 003177 4 NNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNE----KHSESAASYI 79 (842)
Q Consensus 4 ~~~~~~~~L~~yiydyl~k~~~~~~A~~~~~e~~~~~~~~~~~~~~~fL~eww~~Fwd~f~a~~~~----~~~~~~~~y~ 79 (842)
++-.|+++|..||||||++-|..++|++|+.|..+..+ +.+-.+.+||++|||||||+|+|...+ .|+..++.+.
T Consensus 12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh 90 (354)
T KOG4594|consen 12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH 90 (354)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence 56789999999999999999999999999999886655 667778899999999999999995444 6676777666
Q ss_pred HH
Q 003177 80 ES 81 (842)
Q Consensus 80 ~~ 81 (842)
++
T Consensus 91 dy 92 (354)
T KOG4594|consen 91 DY 92 (354)
T ss_pred hh
Confidence 54
No 234
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.48 E-value=4e-12 Score=150.10 Aligned_cols=251 Identities=17% Similarity=0.228 Sum_probs=173.4
Q ss_pred EecCCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCc------eeeEeecCccceEEEEEcCCCCc
Q 003177 587 WCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKED 659 (842)
Q Consensus 587 wd~~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~t~~~------~i~~~~~h~~~V~sl~fspdg~~ 659 (842)
|+. .|..+..+..|...|..++.+++. .+++|||.||+|++||...-.. ...++....+.+.++...+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 653 467888899999999999988765 9999999999999999864221 12334445678999999988775
Q ss_pred EEEEEeCCCcEEEEECCCCc-------eeeEEee--cCCeeE-EEEeC-CCC-EEEEEEcCCeEEEEECCCCeEEEEEe-
Q 003177 660 LLCSCDNNSEIRYWSINNGS-------CAGVFKC--QSGATQ-MRFQP-RLG-RILAAAIENYISILDVETQVCRLKLQ- 726 (842)
Q Consensus 660 llasgs~Dg~I~vwDl~t~~-------~i~~~~~--~~~i~~-v~~sp-~g~-~l~~~s~dg~I~IwDl~t~~~~~~l~- 726 (842)
+|.++.||.|++.+++... +.+.... .+.+.+ -+|.. ... .++.+..-+.|..||++.......++
T Consensus 1113 -~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 -FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred -EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 5566899999999997521 1111111 222332 23332 223 56777778999999999876555444
Q ss_pred -CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-cCCCceEEEEEeCCCC---EEEEEEc--CCeEE
Q 003177 727 -GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTFP---SLLVIGC--YETLE 798 (842)
Q Consensus 727 -~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-~~~~~I~sv~~spdg~---~L~sgs~--dg~I~ 798 (842)
...+.|++++.+|.+.++++|+ .|.+.+||++-+ ..+.... .+..++..+..+|-.+ ..++++. .+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 2457899999999999999999 899999999987 3444332 3346777777666443 4454444 56899
Q ss_pred EEECCCCeEEE-EccC-------------------CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 799 LWNMTENKTLT-LSAH-------------------DKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 799 Iwdl~~~~~~~-~~~h-------------------~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+|++.+|.... +... .-.....++..-+.++.+|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 99999885441 1111 11122233444456899999999999998
No 235
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1e-11 Score=143.03 Aligned_cols=233 Identities=15% Similarity=0.097 Sum_probs=159.5
Q ss_pred cEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCCCceeeEeecCccceEEEEEcCCCCc
Q 003177 583 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 659 (842)
Q Consensus 583 ~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-g--~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~ 659 (842)
.|.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ + .|++||+.++.. ..+...........|+|+|+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence 577778665443 4455677789999999999999877643 2 588899887653 223322334457899999998
Q ss_pred EEEEEeCCCc--EEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEEeCCCCCEEE
Q 003177 660 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHS 734 (842)
Q Consensus 660 llasgs~Dg~--I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~d---g~I~IwDl~t~~~~~~l~~h~~~V~s 734 (842)
++++.+.++. |++||+.+++..............+|+|+++.++..+.. ..|+++|+.+++..... .+......
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 8888777775 888899887765544444456778999999988877653 35777888877644322 12223446
Q ss_pred EEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeE
Q 003177 735 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 807 (842)
Q Consensus 735 l~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg---~I~Iwdl~~~~~ 807 (842)
.+|+|||++|+..+ ++ .|.++|+.++.. ..+... .......|+|+|+.|+..+.++ .|++++......
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~----~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM----QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe----EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 79999999988876 34 566678777632 122211 1223458999999988877654 488888866555
Q ss_pred EEEccCCCCeeEEEEeC
Q 003177 808 LTLSAHDKLVSSLAAST 824 (842)
Q Consensus 808 ~~~~~h~~~V~sla~sp 824 (842)
..+..+.+.+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 56666667788888887
No 236
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.47 E-value=8e-14 Score=149.90 Aligned_cols=230 Identities=15% Similarity=0.184 Sum_probs=189.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcee
Q 003177 602 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 681 (842)
Q Consensus 602 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i 681 (842)
.-....+.++.+|++|+.|+..|.|-.+|..+... ..-..-...|.++.|..+.. +||++ ....++|||-. |..+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--~~Ei~v~Etv~Dv~~LHneq-~~AVA-QK~y~yvYD~~-GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--HFEINVMETVRDVTFLHNEQ-FFAVA-QKKYVYVYDNN-GTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeeccccee--eeeeehhhhhhhhhhhcchH-HHHhh-hhceEEEecCC-CcEE
Confidence 34467889999999999999999999999998653 22223456789999987744 55444 47789999965 7777
Q ss_pred eEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003177 682 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 760 (842)
Q Consensus 682 ~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 760 (842)
..++....+..+.|.|..-.|++++..|.++..|+.+|+.+..+..-.+.+..++-+|-+..+-+|. .|+|.+|.-.+.
T Consensus 204 HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 8888889999999999877788888889999999999999999888888999999999999998888 999999998776
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 003177 761 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVK 839 (842)
Q Consensus 761 ~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~ 839 (842)
+.+..+-+|.++|.++++.++|.|+++++.|..|+|||++.-..+ ++.. .-+...++||-.| +++++....|.
T Consensus 284 ---ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~ 357 (545)
T KOG1272|consen 284 ---EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQ 357 (545)
T ss_pred ---chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeee
Confidence 677788899999999999999999999999999999999987654 3322 4566788888655 44455666799
Q ss_pred EcC
Q 003177 840 IWK 842 (842)
Q Consensus 840 IWd 842 (842)
||.
T Consensus 358 iw~ 360 (545)
T KOG1272|consen 358 IWK 360 (545)
T ss_pred eeh
Confidence 984
No 237
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.46 E-value=3.5e-13 Score=139.43 Aligned_cols=219 Identities=18% Similarity=0.240 Sum_probs=160.6
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee
Q 003177 607 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 686 (842)
Q Consensus 607 ~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~ 686 (842)
-++|+|+|+++|+++.- .+.|-|.++-. +..+...-..|..|.|..+.-++++....|+.|.+|++...+-...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq--~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQ--LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhh--HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 46899999999999765 77787877643 2222223467888999999999999999999999999998887777764
Q ss_pred -cCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCC
Q 003177 687 -QSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSG 760 (842)
Q Consensus 687 -~~~i~~v~~sp~g~~l~~~s-~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~ 760 (842)
..++..++|+|+|+.++..+ .+-.|.+|.+.+.+....-. .+..+..++|+|||++.+.++ |. .+.|.. .
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~---c 165 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS---C 165 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-cccCceeEEECCCCceeeeeecccHHHHHHHHh---h
Confidence 56799999999998776555 58899999999877654332 344568999999999999888 43 233322 2
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 761 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 761 ~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
.....+..+....-..+.+.|+|||..|++ ||---.-.+......-.+..++|+|.+++|+.|+.|+.++|
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrv 236 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRV 236 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhh
Confidence 222444555555667788999999986654 44221111112223356888999999999999999999887
Q ss_pred c
Q 003177 841 W 841 (842)
Q Consensus 841 W 841 (842)
-
T Consensus 237 l 237 (447)
T KOG4497|consen 237 L 237 (447)
T ss_pred h
Confidence 4
No 238
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=9.5e-12 Score=130.56 Aligned_cols=229 Identities=16% Similarity=0.191 Sum_probs=161.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----
Q 003177 603 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---- 678 (842)
Q Consensus 603 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~---- 678 (842)
-.+..++|++.-..++++..|-.|++||-.. ..+..........|+|++|-|.+...|+.++ .+.|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccc
Confidence 3477889999777789999999999999876 3222222233467999999999887787777 456899987431
Q ss_pred c--------eeeEEe--ecCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003177 679 S--------CAGVFK--CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 747 (842)
Q Consensus 679 ~--------~i~~~~--~~~~i~~v~~sp~g~~l~~~s~-dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasg 747 (842)
. +...+. .+..|+++.|.+||..+++++. +..|.|||..++..+.......+.++-+.|||||.+|+++
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 1 111222 2456999999999999998886 5789999999987665554456778899999999999999
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCC----------eEE-------
Q 003177 748 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTEN----------KTL------- 808 (842)
Q Consensus 748 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg-~I~Iwdl~~~----------~~~------- 808 (842)
. |+..++|..... ..........+.|...+|+|+|++|+.+.... .|+-...... +.+
T Consensus 257 t~davfrlw~e~q~---wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 257 TCDAVFRLWQENQS---WTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred cccceeeeehhccc---ceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 8 999999965432 12222233445899999999999877765543 3332222111 011
Q ss_pred --EEcc----CCCCeeEEEEeCCCCEEEEEeCCC
Q 003177 809 --TLSA----HDKLVSSLAASTVNGMVASASHDK 836 (842)
Q Consensus 809 --~~~~----h~~~V~sla~spdg~~Lasgs~DG 836 (842)
+... ..+.+.+++|.|.|.+||+.-..+
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 1111 146788999999999999865443
No 239
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.43 E-value=9e-11 Score=128.24 Aligned_cols=273 Identities=16% Similarity=0.221 Sum_probs=195.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCC---------------cEEEEecCCCeEEEEeccCCCC--eE-EEEEcCCCCEEEEEeC
Q 003177 561 SKVESCHFSPDGKLLATGGHDK---------------KAVLWCTESFTVKSTLEEHTQW--IT-DVRFSPSLSRLATSSA 622 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg---------------~I~vwd~~t~~~~~~l~~h~~~--I~-~l~fspdg~~Latgs~ 622 (842)
..|..+.|||.++||.+-+... .+.|||+.++..+..+..-..+ .. -+.|+.+.+++|-. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 3499999999999999976533 4999999999999998776665 55 68899888887655 3
Q ss_pred CCeEEEEEcCCCCceeeEeecC-ccceEEEEEcCCCCc-EEEE-----EeCCCcEEEEECCCCceeeEEee-cCCeeEEE
Q 003177 623 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKED-LLCS-----CDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 694 (842)
Q Consensus 623 Dg~I~IWDl~t~~~~i~~~~~h-~~~V~sl~fspdg~~-llas-----gs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~ 694 (842)
...++|+++ ++......+..- ...|....|+|.+++ .||. .+..+.+++|.+..++.+..... .-.-..+.
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk 229 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK 229 (561)
T ss_pred cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence 446999997 333222211111 256888899987432 2222 35678999999987766554443 33456788
Q ss_pred EeCCCCEEEEEEc-----------CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCC
Q 003177 695 FQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG 760 (842)
Q Consensus 695 ~sp~g~~l~~~s~-----------dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~ 760 (842)
|.+.|.++++-.. +..++|+++....+.... +..++|..++|.|.++.+++++ +-.+.++|++..
T Consensus 230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred EecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc
Confidence 9998888766432 356889998855444443 5688999999999988777665 779999999875
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEe----
Q 003177 761 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS---- 833 (842)
Q Consensus 761 ~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg---~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs---- 833 (842)
... ......-..+.|+|.++++++++.++ .|.+||..+...+.-.-......-+.|+||+.++.+..
T Consensus 309 ----l~~--~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 309 ----LRF--YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred ----eEE--ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence 222 23345556789999999999988875 89999988876653222223345568999999887764
Q ss_pred --CCCcEEEcC
Q 003177 834 --HDKCVKIWK 842 (842)
Q Consensus 834 --~DG~V~IWd 842 (842)
.|..|+|||
T Consensus 383 ~~~Dn~i~l~~ 393 (561)
T COG5354 383 LRVDNSIKLWD 393 (561)
T ss_pred cccCcceEEEE
Confidence 477899986
No 240
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=8.4e-12 Score=130.31 Aligned_cols=252 Identities=17% Similarity=0.269 Sum_probs=192.8
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe-cCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003177 548 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC-TESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRT 625 (842)
Q Consensus 548 ~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd-~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~ 625 (842)
+.+..+..++||.+.|++...-|...-+++.+.|.+++||- .+.++.-..+. .-..+++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 34445677899999999999999888899999999999994 34455444442 34567899999999999999999999
Q ss_pred EEEEEcCCC---CceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEE
Q 003177 626 VRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 702 (842)
Q Consensus 626 I~IWDl~t~---~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l 702 (842)
+.-+.+... -...+.+..|...|..+.|+.... .+++++.|..+.---.+.+..+..+......+++.+.-. +.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 998876532 223567778999999999997755 555888787766555555555544443333333333222 55
Q ss_pred EEEEcCCeEEEEECC--CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003177 703 LAAAIENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 779 (842)
Q Consensus 703 ~~~s~dg~I~IwDl~--t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 779 (842)
++|...|.|.+..+. .-..+.++.+|.+.+++++|.+....|++|. |..|.+||+.... ....++.+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--GTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--ceeeeeccchhhhhhh
Confidence 666667777665544 4577889999999999999999999999998 9999999997653 5667778889999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 780 VFHPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 780 ~~spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
...+--..+++++.||.|.+|+++.
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccc
Confidence 8888888999999999999999854
No 241
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.5e-12 Score=140.96 Aligned_cols=283 Identities=15% Similarity=0.181 Sum_probs=211.3
Q ss_pred cCCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEEC
Q 003177 503 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGH 580 (842)
Q Consensus 503 ~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSp--dg~~Lasgs~ 580 (842)
....+.....++++||.|..|-+|.+... .. ......||...|.-..|-| +...|++++.
T Consensus 146 ntV~FN~~Gd~l~SgSDD~~vv~WdW~~~----------------~~--~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 146 NTVHFNQRGDVLASGSDDLQVVVWDWVSG----------------SP--KLSFESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred ceeeecccCceeeccCccceEEeehhhcc----------------Cc--ccccccccccchhhhhccCCCCCcCceeccc
Confidence 34444555567888888888887754332 21 2334468999999889988 4457999999
Q ss_pred CCcEEEEecCC-CeE--EEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCc--eeeEeecCcc---ceEEE
Q 003177 581 DKKAVLWCTES-FTV--KSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDY--SLRTFTGHST---TVMSL 651 (842)
Q Consensus 581 Dg~I~vwd~~t-~~~--~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~t~~~--~i~~~~~h~~---~V~sl 651 (842)
||.|++=.+.. +.+ ...+..|.++|..++.-|+. ..|.+++.|+.|.-+|+..... .+.....+.. ...+|
T Consensus 208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI 287 (559)
T ss_pred cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence 99999976643 322 34566799999999999964 4588999999999999886432 1222222333 56789
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCcee------eEE-------eecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 652 DFHPSKEDLLCSCDNNSEIRYWSINNGSCA------GVF-------KCQSGATQMRFQPRLGRILAAAIENYISILDVET 718 (842)
Q Consensus 652 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i------~~~-------~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t 718 (842)
+..|...+.+++++.|-.+++||.+.-... ..+ .....|++++|+.++..++++..|-.|++|.-.-
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 999999999999999999999998753211 111 1234599999999999999999999999995432
Q ss_pred --C----------eEEE-EEeCCCC--CEEEEE-EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003177 719 --Q----------VCRL-KLQGHKN--QVHSVC-WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 781 (842)
Q Consensus 719 --~----------~~~~-~l~~h~~--~V~sl~-~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~ 781 (842)
+ ..+. .+++|.. .|.++- |-|..+|+++|+ -|.|.||+-.++ +.+..+.+....|+|+.-
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~---eii~~MegDr~VVNCLEp 444 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG---EIIRFMEGDRHVVNCLEP 444 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh---HHHHHhhcccceEeccCC
Confidence 2 1222 3778865 466665 468899999999 679999999887 677777777778999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCe
Q 003177 782 HPTFPSLLVIGCYETLELWNMTENK 806 (842)
Q Consensus 782 spdg~~L~sgs~dg~I~Iwdl~~~~ 806 (842)
+|--+.|++++-|..|+||...+.+
T Consensus 445 HP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 445 HPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred CCCCchhhccCCccceeeecCCccc
Confidence 9999999999999999999874443
No 242
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.4e-10 Score=132.89 Aligned_cols=238 Identities=14% Similarity=0.114 Sum_probs=159.0
Q ss_pred CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCE--E-EEEeCCC--eEEEEEcCCCCceeeEeecCccceEEEEEcCC
Q 003177 582 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR--L-ATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 656 (842)
Q Consensus 582 g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~--L-atgs~Dg--~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspd 656 (842)
..|.+.|.+.+... .+......+.+-+|+|||+. + ++...+| .|++.++.++.. ..+....+......|+||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCC
Confidence 36777787655443 45455666788999999875 3 2443443 577888876543 334444555667899999
Q ss_pred CCcEEEEEeCCC----cEEEEECCCC---ceeeEEeec-CCeeEEEEeCCCCEEEEEEc-CCe--EEEEECCC-CeEEEE
Q 003177 657 KEDLLCSCDNNS----EIRYWSINNG---SCAGVFKCQ-SGATQMRFQPRLGRILAAAI-ENY--ISILDVET-QVCRLK 724 (842)
Q Consensus 657 g~~llasgs~Dg----~I~vwDl~t~---~~i~~~~~~-~~i~~v~~sp~g~~l~~~s~-dg~--I~IwDl~t-~~~~~~ 724 (842)
|+.++++.+.+| .+.+|++..+ +........ ......+|+|+|+.|+..+. +|. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998887775444 3444677653 333333222 23467899999998887764 554 55555542 233444
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeE
Q 003177 725 LQGHKNQVHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETL 797 (842)
Q Consensus 725 l~~h~~~V~sl~~spdg~~Lasgs--D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d---g~I 797 (842)
+..+...+....|+|||+.|+..+ + ..|.+||+.++.. ..+......+....|+|||+.|+..+.+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 544556678899999999988766 2 3799999988732 2222233456778999999988876543 379
Q ss_pred EEEECCCCeEEEEccCCCCeeEEEEeCCC
Q 003177 798 ELWNMTENKTLTLSAHDKLVSSLAASTVN 826 (842)
Q Consensus 798 ~Iwdl~~~~~~~~~~h~~~V~sla~spdg 826 (842)
+++|+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999998877666666777888998753
No 243
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=2.1e-09 Score=114.08 Aligned_cols=266 Identities=12% Similarity=0.098 Sum_probs=186.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECC---CcEEEEecCC--CeEE--EEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEE
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTES--FTVK--STLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW 629 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~D---g~I~vwd~~t--~~~~--~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IW 629 (842)
.+.+.++-++|+++.++|.++-.+ |.|..|.++. |++. ........+.+.+++++++++|+++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 455668889999999999887654 7787777764 4443 222222334488999999999999886 5789999
Q ss_pred EcCCCCcee--eEeecCccc----------eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeE----EeecCCeeEE
Q 003177 630 DTENPDYSL--RTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGATQM 693 (842)
Q Consensus 630 Dl~t~~~~i--~~~~~h~~~----------V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~----~~~~~~i~~v 693 (842)
-+....... .....|.+. +.+..+.|++++++++.-.--.|.+|++..++.... ++...+...|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 987643211 123345555 889999999886665544455799999997765432 2345678999
Q ss_pred EEeCCCCEEEEEEc-CCeEEEEECCCC-eEEEEEeC---------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC
Q 003177 694 RFQPRLGRILAAAI-ENYISILDVETQ-VCRLKLQG---------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG 760 (842)
Q Consensus 694 ~~sp~g~~l~~~s~-dg~I~IwDl~t~-~~~~~l~~---------h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~ 760 (842)
.|+|++++.++.++ +++|.+|..+.. ..+..+.. -......|.+++||++|+++. .+.|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999999887776 899999998863 22222221 234667899999999999988 558999988764
Q ss_pred CC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC--CCCeEEEE--ccCCCCeeEEEEe
Q 003177 761 SK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM--TENKTLTL--SAHDKLVSSLAAS 823 (842)
Q Consensus 761 ~~-~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg-~I~Iwdl--~~~~~~~~--~~h~~~V~sla~s 823 (842)
.. ...+.....+......+.|++.+++|+++..++ .|.+|.+ .+|++..+ ........||.|.
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 32 334444444555578999999999999999876 6777755 55665522 2344555666664
No 244
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.40 E-value=5.8e-12 Score=127.30 Aligned_cols=264 Identities=16% Similarity=0.211 Sum_probs=178.5
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~-gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~ 590 (842)
..+.+|...+.|.+|......+ ...++ .|...|+.+...|+ ..|.+-+.|+.+.+|++.
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r~-------------------~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTERD-------------------LPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA 85 (323)
T ss_pred hhhhcccccceEEEEEeecCcc-------------------chhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence 3467788889999996544321 23344 46677888888887 467788899999999998
Q ss_pred CCeEEEEeccCCCCeEEEEEcCC-----CC----EEEEEeCCC-eEEEEEcCCCCceeeE----eecCccceEEEEEcCC
Q 003177 591 SFTVKSTLEEHTQWITDVRFSPS-----LS----RLATSSADR-TVRVWDTENPDYSLRT----FTGHSTTVMSLDFHPS 656 (842)
Q Consensus 591 t~~~~~~l~~h~~~I~~l~fspd-----g~----~Latgs~Dg-~I~IWDl~t~~~~i~~----~~~h~~~V~sl~fspd 656 (842)
....+. .|.-.++++.|.+. ++ .++.-+... .+.+-|..... .+.. -.+..+.+.|..+.-+
T Consensus 86 ~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-qv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 86 YSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-QVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred CcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-eeEccCchhccccCceeeeecccc
Confidence 755442 24444555555432 11 111111110 01122221110 0111 1123456777775432
Q ss_pred --CCcEEEEEeCCCcEEEEECCCCceeeEEe-----------ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC--e-
Q 003177 657 --KEDLLCSCDNNSEIRYWSINNGSCAGVFK-----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQ--V- 720 (842)
Q Consensus 657 --g~~llasgs~Dg~I~vwDl~t~~~i~~~~-----------~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~--~- 720 (842)
...++++|.++|.|.+||+.++..+..+. +..++.++.|.+....=+.++.+..+..|.+... .
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence 34466788899999999999874333222 3567888988876666677777888888887643 2
Q ss_pred -EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003177 721 -CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 798 (842)
Q Consensus 721 -~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~ 798 (842)
....+.-..-.|..+.+-||++++++++ |+.|+||+.++. ..+..+.-|...|.+++|+|+.+.+++++.|..|.
T Consensus 242 q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 242 QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---CchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence 1222222345688899999999999999 999999999998 77888888999999999999999999999999999
Q ss_pred EEEC
Q 003177 799 LWNM 802 (842)
Q Consensus 799 Iwdl 802 (842)
+|++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9986
No 245
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.39 E-value=9.6e-10 Score=120.82 Aligned_cols=256 Identities=11% Similarity=0.056 Sum_probs=169.9
Q ss_pred CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCCceeeEeecC-------
Q 003177 582 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH------- 644 (842)
Q Consensus 582 g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~----------Dg~I~IWDl~t~~~~i~~~~~h------- 644 (842)
+.|.|.|..+++.+..+.....+- .+ ++||++.|+++.. +..|.+||+.+.+. +..+.-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhhc
Confidence 899999999999998886544433 35 9999999887766 78999999998764 4333321
Q ss_pred ccceEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC-CeE-
Q 003177 645 STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-QVC- 721 (842)
Q Consensus 645 ~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t-~~~- 721 (842)
......++++|+|+.++++--. +..|.++|+.+++.+..+.......-...+... +.+.+.||......+.+ ++.
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDT--FFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCc--cEEEeecCceEEEEecCCCceE
Confidence 1233478999999987766644 899999999999999988875543333333322 22334455444433322 111
Q ss_pred EEE---EeCCCCCEE-EEEEcC-CCCEEEEEeCCeEEEEEcCCCCCc--eeEEEeec-------CCCceEEEEEeCCCCE
Q 003177 722 RLK---LQGHKNQVH-SVCWNT-SGEYLASVSDELVRVWSIGSGSKG--ECIHELSC-------TGNKFHSCVFHPTFPS 787 (842)
Q Consensus 722 ~~~---l~~h~~~V~-sl~~sp-dg~~LasgsDg~I~IwDl~s~~~~--~~i~~~~~-------~~~~I~sv~~spdg~~ 787 (842)
... +.....++. .-.|.+ +|.++++..+|.|++.|+...... ..+..+.. ..+.+.-++++++++.
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 111 111001110 013455 889888888999999997553211 12222111 1233445999999999
Q ss_pred EEEEEc----------CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEe-CCCcEEEcC
Q 003177 788 LLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 842 (842)
Q Consensus 788 L~sgs~----------dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~-~Lasgs-~DG~V~IWd 842 (842)
+++... .+.|.++|..+++.+....-...+..|+++||++ +|++.+ .++.|.|.|
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 998542 2489999999999996666667899999999999 777666 577788765
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=7.6e-11 Score=135.53 Aligned_cols=222 Identities=16% Similarity=0.156 Sum_probs=151.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EeCCC--eEE
Q 003177 554 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVR 627 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~Lasgs~D---g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Lat-gs~Dg--~I~ 627 (842)
+.+..|...+....|+|||+.|+..+.+ ..|++||+.+++... +....+.+...+|+|||+.|+. .+.+| .|+
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 3445667789999999999999877644 369999998876543 3334455667999999998874 44454 688
Q ss_pred EEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEE
Q 003177 628 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 705 (842)
Q Consensus 628 IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~ 705 (842)
+||+.++. ...+..+........|+|+++.++++...++ .|+++|+.+++...............|+|+++.++..
T Consensus 271 ~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 271 VMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred EEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 88988754 3445556666777899999998887765554 5777888877754433222334567899999999887
Q ss_pred EcC-C--eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEE
Q 003177 706 AIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS 778 (842)
Q Consensus 706 s~d-g--~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~s 778 (842)
..+ + .|.+||+.++....... ........|+|||+.|+..+ ++ .|+++++... ....+....+.+..
T Consensus 349 ~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~~ 422 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVRE 422 (430)
T ss_pred EccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcCC
Confidence 754 3 58889998875433222 22233568999999988776 33 5777777543 22333334455666
Q ss_pred EEEeCC
Q 003177 779 CVFHPT 784 (842)
Q Consensus 779 v~~spd 784 (842)
.+|+|-
T Consensus 423 p~ws~~ 428 (430)
T PRK00178 423 PSWSPY 428 (430)
T ss_pred CccCCC
Confidence 677663
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=9.9e-11 Score=133.79 Aligned_cols=204 Identities=15% Similarity=0.191 Sum_probs=147.8
Q ss_pred eEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEE
Q 003177 625 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 702 (842)
Q Consensus 625 ~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D--g~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l 702 (842)
.|.++|.+... .+.+..+...+.+.+|+|+|+.++++...+ ..|++||+.+++..........+.+++|+|+++.|
T Consensus 171 ~l~~~d~~g~~--~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDGAN--PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCCCC--CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 67888876433 455666777899999999999877665433 47999999988766555555567789999999988
Q ss_pred EEEEc-CC--eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCc
Q 003177 703 LAAAI-EN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNK 775 (842)
Q Consensus 703 ~~~s~-dg--~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~ 775 (842)
++... ++ .|++||+.++... .+..+........|+|||+.|+.++ ++ .|+++|+.++. ...+..+...
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~~ 323 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGGY 323 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCCC
Confidence 76543 33 6899999877543 3334555556789999999887766 33 68888887652 2233334566
Q ss_pred eEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCC
Q 003177 776 FHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 836 (842)
Q Consensus 776 I~sv~~spdg~~L~sgs~dg---~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG 836 (842)
+..+.|+|++++|+.++.++ .|++||+.++....+... ......+|+||+++|+.++.++
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 77889999999999988876 899999988766544433 2345678999999888777654
No 248
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=3.4e-11 Score=132.76 Aligned_cols=237 Identities=15% Similarity=0.170 Sum_probs=171.8
Q ss_pred cCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCceeeEeecCccceE-EEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 003177 600 EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINN 677 (842)
Q Consensus 600 ~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~-sl~fspdg~~llasgs~Dg~I~vwDl~t 677 (842)
.|....+.|..+|||.|+ +||.+.-.|+|||+.+-. ++.-......|. -.-++.|-...+ .-..|.+|-+...-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~v-~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKSV-FLQNDRTIEFHAKY- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEeccchhhhe-EeecCceeeehhhc-
Confidence 477788999999999986 567778899999998633 332222233333 333343333233 33347777654322
Q ss_pred CceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003177 678 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 756 (842)
Q Consensus 678 ~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwD 756 (842)
.....+..+..-..++++.-..-|++++....|+-++++.|.-+..+....+.+++|..++...+|++|+ +|.|..||
T Consensus 125 -G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 125 -GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred -CeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 2233344445566777776666688888889999999999999988888889999999999999999999 99999999
Q ss_pred cCCCCCceeEEE---eecCC-----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCC--CCeeEEEEeCC-
Q 003177 757 IGSGSKGECIHE---LSCTG-----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHD--KLVSSLAASTV- 825 (842)
Q Consensus 757 l~s~~~~~~i~~---~~~~~-----~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~--~~V~sla~spd- 825 (842)
.++......+.. +..+. ..|+++.|+.+|-.+++|+.+|.|+|||++..+++....|. -+|..+.|.+.
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 988743332222 11222 34899999999999999999999999999999998777775 46888888765
Q ss_pred -CCEEEEEeCCCcEEEcC
Q 003177 826 -NGMVASASHDKCVKIWK 842 (842)
Q Consensus 826 -g~~Lasgs~DG~V~IWd 842 (842)
...|++. +...++|||
T Consensus 284 ~q~~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 284 QQNKVVSM-DKRILKIWD 300 (703)
T ss_pred CCceEEec-chHHhhhcc
Confidence 3456654 456789997
No 249
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=3.7e-11 Score=122.60 Aligned_cols=146 Identities=18% Similarity=0.356 Sum_probs=108.1
Q ss_pred eeEEEEeCCCCEEEEEEc----------CCeEEEEECCC-CeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe---CCeEEE
Q 003177 690 ATQMRFQPRLGRILAAAI----------ENYISILDVET-QVCRLKLQG-HKNQVHSVCWNTSGEYLASVS---DELVRV 754 (842)
Q Consensus 690 i~~v~~sp~g~~l~~~s~----------dg~I~IwDl~t-~~~~~~l~~-h~~~V~sl~~spdg~~Lasgs---Dg~I~I 754 (842)
-..+.|++.|.+|++-.. -+...+|.++. ...+..+.- ..++|.+++|+|+|+.+++.. +..|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 356788888888776544 12345555432 223333322 345799999999999876653 679999
Q ss_pred EEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEE
Q 003177 755 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 831 (842)
Q Consensus 755 wDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d---g~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Las 831 (842)
||++ + ..+..+. ...+..+.|+|+|++|++++.+ |.|.+||+.+.+.+....|.. ++.++|+|||++|++
T Consensus 88 yd~~-~---~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-G---KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-c---cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEE
Confidence 9996 2 4555553 5677899999999999998854 579999999988886666654 789999999999999
Q ss_pred EeC------CCcEEEcC
Q 003177 832 ASH------DKCVKIWK 842 (842)
Q Consensus 832 gs~------DG~V~IWd 842 (842)
+.. |+.++||+
T Consensus 161 a~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEeccceeccccEEEEE
Confidence 874 77888885
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.5e-10 Score=132.58 Aligned_cols=214 Identities=13% Similarity=0.102 Sum_probs=142.3
Q ss_pred CeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCc--EEEEEeCCC--cEEEEECCCCceeeEEeecCCeeEEEEeCCC
Q 003177 624 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED--LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRL 699 (842)
Q Consensus 624 g~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~--llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g 699 (842)
..|.+.|.+... .+.+......+.+-.|+|||+. ++++...+| .|++.++.+++........+......|+|||
T Consensus 165 ~~l~~~d~dG~~--~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQN--LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCC--ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence 356677776543 3445555666788899999976 333554443 5888899888766655555667778999999
Q ss_pred CEEEEEEc-CC----eEEEEECCCC---eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCe--EEEEEcCCCCCceeEE
Q 003177 700 GRILAAAI-EN----YISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DEL--VRVWSIGSGSKGECIH 767 (842)
Q Consensus 700 ~~l~~~s~-dg----~I~IwDl~t~---~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~--I~IwDl~s~~~~~~i~ 767 (842)
+.|+.... +| .+.+|++..+ ........+.......+|+|||+.|+..+ ++. |+++++.... ....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~ 320 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPR 320 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceE
Confidence 99887664 22 3444676652 33333333334456789999999888766 564 4444553221 2233
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeC-C--CcEEEc
Q 003177 768 ELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-D--KCVKIW 841 (842)
Q Consensus 768 ~~~~~~~~I~sv~~spdg~~L~sgs~d---g~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~-D--G~V~IW 841 (842)
.+......+....|+|||+.|+..+.+ ..|++||+.+++...+......+..+.|+|||++|+..+. + ..|++|
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 344444566788999999999887654 3799999999988766655556788999999998775443 3 345554
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=9.4e-11 Score=135.13 Aligned_cols=220 Identities=18% Similarity=0.194 Sum_probs=147.6
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EeCCCe--EEE
Q 003177 555 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRV 628 (842)
Q Consensus 555 ~l~gH~~~V~sv~fSpdg~~Lasgs~D---g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Lat-gs~Dg~--I~I 628 (842)
.+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++... +..........+|+|||+.|+. .+.+|. |++
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 344566778999999999998876543 258899998876532 3222334457899999998875 455664 777
Q ss_pred EEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEE
Q 003177 629 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 706 (842)
Q Consensus 629 WDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s 706 (842)
||+.++. ...+..+...+...+|+|+++.+++++..++ .|+++|+.+++..............+|+|++++++..+
T Consensus 291 ~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 7887654 4455556666778999999998887776555 47777887776544332222344578999999988876
Q ss_pred cC-C--eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003177 707 IE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSC 779 (842)
Q Consensus 707 ~d-g--~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 779 (842)
.+ + .|.++|+.++.... +... .......|+|||+.|+... ++ .+++++... .....+....+.+...
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G----~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG----RFKARLPAGQGEVKSP 442 (448)
T ss_pred ecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCC
Confidence 54 3 56778888876433 2222 1223458999999887766 33 477777643 3344444445566777
Q ss_pred EEeC
Q 003177 780 VFHP 783 (842)
Q Consensus 780 ~~sp 783 (842)
+|+|
T Consensus 443 ~Wsp 446 (448)
T PRK04792 443 AWSP 446 (448)
T ss_pred ccCC
Confidence 7776
No 252
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=4.3e-12 Score=138.75 Aligned_cols=166 Identities=17% Similarity=0.271 Sum_probs=128.6
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCC-CCcEEEEEeCCCcEEE
Q 003177 594 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRY 672 (842)
Q Consensus 594 ~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~v 672 (842)
....+.+|.+.|+|+.|+.+|.+|++||+|-.+.|||.-..+.....-++|...|.++.|-|. ++.++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 345688999999999999999999999999999999998766656677899999999999985 5668889999999999
Q ss_pred EECCCCc----------eeeEEe-ecCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE-EE---------EEeCCCC
Q 003177 673 WSINNGS----------CAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-RL---------KLQGHKN 730 (842)
Q Consensus 673 wDl~t~~----------~i~~~~-~~~~i~~v~~sp~g-~~l~~~s~dg~I~IwDl~t~~~-~~---------~l~~h~~ 730 (842)
+|+...+ .+..+. +...|..++..|++ ..+.++++||.|+-||++.... .. .+...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9998522 122222 23457788888887 6788999999999999986321 11 1111123
Q ss_pred CEEEEEEcCCC-CEEEEEe-CCeEEEEEcCC
Q 003177 731 QVHSVCWNTSG-EYLASVS-DELVRVWSIGS 759 (842)
Q Consensus 731 ~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s 759 (842)
...|+.++|.. .+|++|+ |-.+++||.+.
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 46788999865 5677777 88999999653
No 253
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.34 E-value=9.2e-11 Score=119.67 Aligned_cols=155 Identities=19% Similarity=0.274 Sum_probs=110.9
Q ss_pred EEEEEcCCCCEEEEEEC----------CCcEEEEecCC-CeEEEEecc-CCCCeEEEEEcCCCCEEEEE--eCCCeEEEE
Q 003177 564 ESCHFSPDGKLLATGGH----------DKKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPSLSRLATS--SADRTVRVW 629 (842)
Q Consensus 564 ~sv~fSpdg~~Lasgs~----------Dg~I~vwd~~t-~~~~~~l~~-h~~~I~~l~fspdg~~Latg--s~Dg~I~IW 629 (842)
..+.|+++|++|++-.. -+...||.++. ...+..+.- ..++|.+++|+|+++.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35789999987765433 13345555422 223334432 34579999999999987655 356799999
Q ss_pred EcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEc
Q 003177 630 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 707 (842)
Q Consensus 630 Dl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs--~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~ 707 (842)
|++. ..+..+ +...+..|.|+|+|+.+++++. ..|.|.+||+++.+.+..+.+ ..++.++|+|+|++++++..
T Consensus 89 d~~~--~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVKG--KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCcc--cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc-CcEEEEEEcCCCCEEEEEEe
Confidence 9972 234444 3567889999999987665542 357899999999998888776 45789999999999998875
Q ss_pred ------CCeEEEEECCCCeEEEE
Q 003177 708 ------ENYISILDVETQVCRLK 724 (842)
Q Consensus 708 ------dg~I~IwDl~t~~~~~~ 724 (842)
|+.++||+.. |+.+..
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred ccceeccccEEEEEec-CeEeEe
Confidence 7889999985 444443
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=4e-09 Score=112.06 Aligned_cols=261 Identities=11% Similarity=0.127 Sum_probs=182.7
Q ss_pred CCcEEEEecCCC--eEE-EEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeeEe---ecCccceEEE
Q 003177 581 DKKAVLWCTESF--TVK-STLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTF---TGHSTTVMSL 651 (842)
Q Consensus 581 Dg~I~vwd~~t~--~~~-~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~t~~~~i~~~---~~h~~~V~sl 651 (842)
+.-|++|++.+. +.. ..+-.+.+.++-|+|+|+.++|+++..+ |.|..|.++.....+..+ .....+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 467999988732 221 1223567789999999999999988664 678888887532212222 1122344889
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCC-Cce---eeEEeecCC----------eeEEEEeCCCCEEEEEEcC-CeEEEEEC
Q 003177 652 DFHPSKEDLLCSCDNNSEIRYWSINN-GSC---AGVFKCQSG----------ATQMRFQPRLGRILAAAIE-NYISILDV 716 (842)
Q Consensus 652 ~fspdg~~llasgs~Dg~I~vwDl~t-~~~---i~~~~~~~~----------i~~v~~sp~g~~l~~~s~d-g~I~IwDl 716 (842)
++++++..++++....|.|.++-++. |.. +..+.+.+. +....+.|+++++++..-. ..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999998887777889999999965 432 233344333 7889999999999888764 78999999
Q ss_pred CCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeec------CCCceEEEEEeCC
Q 003177 717 ETQVCRLKLQ---GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSC------TGNKFHSCVFHPT 784 (842)
Q Consensus 717 ~t~~~~~~l~---~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~------~~~~I~sv~~spd 784 (842)
..+.....-. .....-+.|.|+|++++.++.. +++|.+|..... ...+.+..+.. .......+.+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9775432111 2445678999999999998877 999999999874 22334443332 2345678899999
Q ss_pred CCEEEEEEcCC-eEEEEECC--CCeEE---EEccCCCCeeEEEEeCCCCEEEEEeCCC-cEEEc
Q 003177 785 FPSLLVIGCYE-TLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASASHDK-CVKIW 841 (842)
Q Consensus 785 g~~L~sgs~dg-~I~Iwdl~--~~~~~---~~~~h~~~V~sla~spdg~~Lasgs~DG-~V~IW 841 (842)
|++|+++.... .|.+|.+. ++++. ....+......+.|++++++|+++..|+ .|.||
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 99988876543 78888764 34433 2334455588999999999999988654 46655
No 255
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.31 E-value=3.5e-09 Score=119.52 Aligned_cols=254 Identities=11% Similarity=0.044 Sum_probs=162.0
Q ss_pred CCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEE-EEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccce-
Q 003177 571 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV- 648 (842)
Q Consensus 571 dg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~-l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V- 648 (842)
++..+++++.++.|+.+|..+|+.+....... .+.+ ... .+..++.++.++.|+.||.++++. +..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCcee
Confidence 46678888899999999999999886654332 2222 122 345677788899999999998764 33332221111
Q ss_pred ----EEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCC-----e---eEEEEeC--CCCEEEEEEcCCeEEEE
Q 003177 649 ----MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----A---TQMRFQP--RLGRILAAAIENYISIL 714 (842)
Q Consensus 649 ----~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-----i---~~v~~sp--~g~~l~~~s~dg~I~Iw 714 (842)
.+..+. + . .++.+..++.+..+|+++|+.+........ + ..+.-+| .++.+++++.+|.++.|
T Consensus 180 ~~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 180 LRGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL 256 (377)
T ss_pred ecCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence 111222 2 3 455777789999999999987765442111 0 0011111 35688888899999999
Q ss_pred ECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEE
Q 003177 715 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIG 792 (842)
Q Consensus 715 Dl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~~spdg~~L~sgs 792 (842)
|.++++.+..... .. ...... ++..+++++ +|.|+.+|..++ +.+...... ...+.+..+ .+..|++++
T Consensus 257 d~~tG~~~W~~~~-~~-~~~p~~--~~~~vyv~~~~G~l~~~d~~tG---~~~W~~~~~~~~~~ssp~i--~g~~l~~~~ 327 (377)
T TIGR03300 257 DLRSGRVLWKRDA-SS-YQGPAV--DDNRLYVTDADGVVVALDRRSG---SELWKNDELKYRQLTAPAV--VGGYLVVGD 327 (377)
T ss_pred ECCCCcEEEeecc-CC-ccCceE--eCCEEEEECCCCeEEEEECCCC---cEEEccccccCCccccCEE--ECCEEEEEe
Confidence 9999988776652 11 122222 345566656 999999999887 444333211 122222233 356899999
Q ss_pred cCCeEEEEECCCCeEE-EEccCCCCee-EEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 793 CYETLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 793 ~dg~I~Iwdl~~~~~~-~~~~h~~~V~-sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.+|.|+++|..+++.+ .+..+...+. ...+. + +.|+.++.||.|+.|.
T Consensus 328 ~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 328 FEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAFR 377 (377)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence 9999999999999988 4444443333 33333 3 3578889999998763
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=6.1e-11 Score=139.10 Aligned_cols=267 Identities=16% Similarity=0.236 Sum_probs=186.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEe------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 633 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l------~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t 633 (842)
-+++.+..+-. +||..|. .-.|.+||+..+..+..+ ..|.. .... .-.+.+++++..-+.+.+=+...
T Consensus 7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~--e~~~-~l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRG--EGKV-KLLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccc--cccc-eeccceEEEEEeecceeecchhh
Confidence 34455555554 4665554 457999999887665443 23400 0000 00234556665544444333221
Q ss_pred CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCee-----EEEEeCCCCEEEEEEcC
Q 003177 634 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-----QMRFQPRLGRILAAAIE 708 (842)
Q Consensus 634 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~-----~v~~sp~g~~l~~~s~d 708 (842)
..+......|....+..+.. .++....+..+.+||...+.....+.+..... -+.++++.-++++|+.-
T Consensus 81 -----~~~~~~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 81 -----QIIERFSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred -----hhhhhccccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc
Confidence 11112223344444444434 45566668899999999887777666544321 23345565678888889
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003177 709 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 787 (842)
Q Consensus 709 g~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~ 787 (842)
+.|.+|+.........+.+|.+.|.++.|+.||.++++++ |.++++|++.+.+... ...-+|...+..++|+|. .
T Consensus 155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--e
Confidence 9999999884444446889999999999999999999999 8899999999985322 345578999999999999 8
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEccCC-CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 788 LLVIGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 788 L~sgs~dg~I~Iwdl~~~~~~~~~~h~-~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|++++.|-+.++|+.....+..+..|. ..|+.++..++...++|++.||.+++|+
T Consensus 231 i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 999999999999987766666666775 5799999999989999999999999996
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=4.2e-10 Score=125.41 Aligned_cols=187 Identities=17% Similarity=0.274 Sum_probs=151.8
Q ss_pred CCCCEEEEEECCCcEEEEecCCCeEEEEec---cCCCCeEEEEEc------C--------------CCCEEEEEeCCCeE
Q 003177 570 PDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFS------P--------------SLSRLATSSADRTV 626 (842)
Q Consensus 570 pdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~---~h~~~I~~l~fs------p--------------dg~~Latgs~Dg~I 626 (842)
|-..++|....||.+++||..+++....|. .-++..++..|. | +...|+-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456789999999999999999887766653 223445555552 1 23467888889999
Q ss_pred EEEEcCCCCceeeEe-ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEE
Q 003177 627 RVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA 704 (842)
Q Consensus 627 ~IWDl~t~~~~i~~~-~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~ 704 (842)
.+|++..++...+.. ..|.+.|.++.++.+-. .|.+++.|+.+.+|+......++.+.. ...+.+++++||++.+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999999877543333 46889999999887644 788999999999999999999988886 455889999999998888
Q ss_pred EEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC-----CCEEEEEe--CCeEEEEEcCC
Q 003177 705 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS-----GEYLASVS--DELVRVWSIGS 759 (842)
Q Consensus 705 ~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spd-----g~~Lasgs--Dg~I~IwDl~s 759 (842)
++ +.|++||+++++.+.+|.+|.++|.++.|..+ |.++.++. +..+.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 76 78999999999999999999999999999876 77888766 66788887765
No 258
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=4.5e-10 Score=123.61 Aligned_cols=264 Identities=17% Similarity=0.229 Sum_probs=169.3
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEEcC
Q 003177 564 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDTE 632 (842)
Q Consensus 564 ~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-----------Dg~I~IWDl~ 632 (842)
+-+.|||.|.||+|--.- -|.+|--++...+..+. |.+ |.-+.|||+.+||+|-+. ...++|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEecc-ceeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 458999999999987664 48899887777777663 654 899999999999998664 2579999999
Q ss_pred CCCceeeEeec--Cccce-EEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcC
Q 003177 633 NPDYSLRTFTG--HSTTV-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE 708 (842)
Q Consensus 633 t~~~~i~~~~~--h~~~V-~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~d 708 (842)
++.. .+.+.. ....+ .-+.||.|++++. .-. ...|.||+..+...+-.-. ...+|....|+|.+..|+.-...
T Consensus 291 tG~l-krsF~~~~~~~~~WP~frWS~DdKy~A-rm~-~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 291 TGLL-KRSFPVIKSPYLKWPIFRWSHDDKYFA-RMT-GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred ccch-hcceeccCCCccccceEEeccCCceeE-Eec-cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 9764 444443 22222 3467898877443 332 3678888776533221111 12445555566654444332210
Q ss_pred -----C----------------------------------------------------eEEEEECCCCeEEEEEeCCCCC
Q 003177 709 -----N----------------------------------------------------YISILDVETQVCRLKLQGHKNQ 731 (842)
Q Consensus 709 -----g----------------------------------------------------~I~IwDl~t~~~~~~l~~h~~~ 731 (842)
. .+.|+.++..........-...
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~ 447 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES 447 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh
Confidence 0 1222222222111111123456
Q ss_pred EEEEEEcCCCCEEEEEe----CCeEEEEEcCC-CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECC
Q 003177 732 VHSVCWNTSGEYLASVS----DELVRVWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMT 803 (842)
Q Consensus 732 V~sl~~spdg~~Lasgs----Dg~I~IwDl~s-~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~---dg~I~Iwdl~ 803 (842)
|...+|.|.|..+++-+ ..++.+|.+.+ ......+..+. ....+.+.|+|.|.++++++- .|.+.++|..
T Consensus 448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 78889999998877655 34899999883 33334444443 356788999999999888754 5689999988
Q ss_pred CC--eEEEEccCCCCeeEEEEeCCCCEEEEEeCCC
Q 003177 804 EN--KTLTLSAHDKLVSSLAASTVNGMVASASHDK 836 (842)
Q Consensus 804 ~~--~~~~~~~h~~~V~sla~spdg~~Lasgs~DG 836 (842)
.. +.+....| ...+.+.|.|.|+|++|++.-.
T Consensus 526 ~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 526 YADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred hhhhhhccCccc-cccccceECCCCCEEEEeeehh
Confidence 53 33333344 3467899999999999998644
No 259
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=3.8e-11 Score=131.05 Aligned_cols=280 Identities=15% Similarity=0.214 Sum_probs=195.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC-------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003177 552 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 624 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t-------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 624 (842)
....+.||...|..++--.+.+-+++++.|++|++|.++. ..+..++..|+.+|.++.|..+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 4567889999999998877888899999999999998763 34667888999999999999998888765 78
Q ss_pred eEEEEEcCCCCceeeEe----ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee------cCCeeEEE
Q 003177 625 TVRVWDTENPDYSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMR 694 (842)
Q Consensus 625 ~I~IWDl~t~~~~i~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~------~~~i~~v~ 694 (842)
-|.+||.--+....... .+..+.|.|+.- -+...+++.|+...+|+++|.+.++.+..++. ..-+.+++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 89999976544321111 112233444431 13344566668899999999999887766654 23478999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEE-EEcCCCCCceeEEEeecC
Q 003177 695 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV-WSIGSGSKGECIHELSCT 772 (842)
Q Consensus 695 ~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~I-wDl~s~~~~~~i~~~~~~ 772 (842)
..+.|++++++-..|.|.+.|.++|+.+..+.........++- |....|+... |.++.| |..-++ ......+..
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg---imh~q~kpp 959 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG---IMHLQDKPP 959 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC---eeeeccCCC
Confidence 9999999999999999999999999998887765554444443 5555666555 888888 876655 222222221
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-------eEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 773 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-------KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 773 ~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~-------~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
..+.. .+-.-|..|++......+.+|.-... ..++-....+..++++.-|-..-+..|...|.|.+
T Consensus 960 pepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 960 PEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred Ccchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 11111 12223556777777777777742211 11223345567888888887777788888898876
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.2e-09 Score=121.03 Aligned_cols=248 Identities=12% Similarity=0.165 Sum_probs=173.1
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCC--CEEEE-----EeCCCeEEEEEcCCCCc
Q 003177 564 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL--SRLAT-----SSADRTVRVWDTENPDY 636 (842)
Q Consensus 564 ~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg--~~Lat-----gs~Dg~I~IWDl~t~~~ 636 (842)
++..|+.|..+.|-- ..+.|.+|++.+.+.+.. .-|...|+.+.++|.+ ..+|+ .+.-..|+||.+.....
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 688999887654432 246899999887544322 2367889999999863 33333 23445899998873221
Q ss_pred ----eeeEeecCccceEEEEEcCCCCcEEEEEeC--C---------CcEEEEECCCCceeeEEeecCCeeEEEEeCCCCE
Q 003177 637 ----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--N---------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 701 (842)
Q Consensus 637 ----~i~~~~~h~~~V~sl~fspdg~~llasgs~--D---------g~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~ 701 (842)
..+.|. ...-..+.|++-|.-+|+..+. | .+++++++...++...+...++|.++.|++++..
T Consensus 207 ~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 112222 2233457788877776665442 2 3789999986677777777899999999999988
Q ss_pred EEEEE--cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003177 702 ILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNK 775 (842)
Q Consensus 702 l~~~s--~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 775 (842)
++++. .-..+.|||++. .++..+ ..++-.++-|+|.|++|+.++ -|.|.|||+.+. +++..+... .
T Consensus 285 F~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a~--~ 356 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKAA--N 356 (566)
T ss_pred EEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---hhccccccC--C
Confidence 76654 357899999974 455555 356778999999999999887 569999999885 667666543 3
Q ss_pred eEEEEEeCCCCEEEEEEc------CCeEEEEECCCCeEEEEccCCCCeeEEEEeC
Q 003177 776 FHSCVFHPTFPSLLVIGC------YETLELWNMTENKTLTLSAHDKLVSSLAAST 824 (842)
Q Consensus 776 I~sv~~spdg~~L~sgs~------dg~I~Iwdl~~~~~~~~~~h~~~V~sla~sp 824 (842)
-+-+.|+|||.+|++++. |+.++||++....+... .-......+.|-|
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~-~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK-MFKSELLQVEWRP 410 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh-hhhHhHhheeeee
Confidence 466899999999999986 56899999866544321 1111566667765
No 261
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.23 E-value=3.8e-10 Score=115.98 Aligned_cols=199 Identities=20% Similarity=0.255 Sum_probs=154.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEE--EeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCcee
Q 003177 562 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSL 638 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~--~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~t~~~~i 638 (842)
...++.|++.+.-++++..+|.+.+-+........ .++.|.-.++.+.|+. +.+++++|++|+.+..||++.++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 35678899989999999999999976655554444 7889999999999986 45789999999999999999544433
Q ss_pred -eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCceeeEEeecCCeeEEEEeCCCC-EEEEEEcCCeEEEEE
Q 003177 639 -RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQSGATQMRFQPRLG-RILAAAIENYISILD 715 (842)
Q Consensus 639 -~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~~~~~~~i~~v~~sp~g~-~l~~~s~dg~I~IwD 715 (842)
.....|...|.+|.-+|....++++|+.|-.|++||.+ -++++..-...++|..+.++|... .+++++.-+..+|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 33667899999999999889999999999999999999 477887777789999999999533 355566666677777
Q ss_pred CCCC--e---EEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEE-EEEcCCC
Q 003177 716 VETQ--V---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVR-VWSIGSG 760 (842)
Q Consensus 716 l~t~--~---~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~-IwDl~s~ 760 (842)
...+ + .....+.|.+-+..-.|.....+|++|+ |..++ +|-.-++
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 6654 2 3344556777777777766667899988 77755 7765444
No 262
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=1.5e-09 Score=122.08 Aligned_cols=275 Identities=15% Similarity=0.197 Sum_probs=195.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCC---------------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADR 624 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~---------------~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 624 (842)
.....|+.|+....+||+|+.||.++|..+.+. ..-.++.+|++.|.-+.|+.+...|-|+..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 445899999999999999999999999976531 11245789999999999999999999999999
Q ss_pred eEEEEEcCCCCceeeEe-ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEE
Q 003177 625 TVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL 703 (842)
Q Consensus 625 ~I~IWDl~t~~~~i~~~-~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~ 703 (842)
.|.||-+-.+..+-..+ ....+.|.+++|..+|.. ++....||.|.|=.++..+.-..--.......+.|++|...++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 99999988766532222 234567899999999885 5577789988887776433221111123356789999999899
Q ss_pred EEEcCCeEEEEECCCC-------eEEEE----EeCCCCCEEEEEEc--------CCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003177 704 AAAIENYISILDVETQ-------VCRLK----LQGHKNQVHSVCWN--------TSGEYLASVS-DELVRVWSIGSGSKG 763 (842)
Q Consensus 704 ~~s~dg~I~IwDl~t~-------~~~~~----l~~h~~~V~sl~~s--------pdg~~Lasgs-Dg~I~IwDl~s~~~~ 763 (842)
.+-..|.+.+||.... .+... +......|..++|. ||...|+++- .|.+.|..-.+...+
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 9989999999997642 12111 12223346677774 4667788887 788887765554322
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeC
Q 003177 764 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 834 (842)
Q Consensus 764 ~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg---------~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~ 834 (842)
..+ ..+-.+....|+++|..|++++.+. .|.+|..-..-.-++......|++++|-..|-.++.+ .
T Consensus 253 vv~----dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A-v 327 (1189)
T KOG2041|consen 253 VVV----DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-V 327 (1189)
T ss_pred eEE----ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-e
Confidence 222 2346788899999999999998753 5666665443333777778899999998777666654 4
Q ss_pred CCcEEE
Q 003177 835 DKCVKI 840 (842)
Q Consensus 835 DG~V~I 840 (842)
|+.|++
T Consensus 328 dsfiyf 333 (1189)
T KOG2041|consen 328 DSFIYF 333 (1189)
T ss_pred cceEEE
Confidence 666654
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.21 E-value=4.6e-08 Score=107.69 Aligned_cols=234 Identities=12% Similarity=0.133 Sum_probs=148.9
Q ss_pred EcCCCCEEEEEEC----------CCcEEEEecCCCeEEEEeccCC-------CCeEEEEEcCCCCEEEEEeC--CCeEEE
Q 003177 568 FSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLSRLATSSA--DRTVRV 628 (842)
Q Consensus 568 fSpdg~~Lasgs~----------Dg~I~vwd~~t~~~~~~l~~h~-------~~I~~l~fspdg~~Latgs~--Dg~I~I 628 (842)
+||||+.|+++.. +..|.+||..+++.+..+.... .....++++|||++|++... +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998887765 7899999999999998886422 23347899999999998763 689999
Q ss_pred EEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-Ccee-e---EEee-cCCe-eEEEEeC-CCC
Q 003177 629 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA-G---VFKC-QSGA-TQMRFQP-RLG 700 (842)
Q Consensus 629 WDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i-~---~~~~-~~~i-~~v~~sp-~g~ 700 (842)
+|+.+.+. +..+.-. ....-...+.. .+++ .| .||......+.+ ++.. . .+.. ...+ ..-.|.+ +++
T Consensus 133 vD~~~~kv-v~ei~vp-~~~~vy~t~e~-~~~~-~~-~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~ 207 (352)
T TIGR02658 133 VDLEGKAF-VRMMDVP-DCYHIFPTAND-TFFM-HC-RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR 207 (352)
T ss_pred EECCCCcE-EEEEeCC-CCcEEEEecCC-ccEE-Ee-ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence 99998764 4433321 11111222211 2121 12 244444433322 2211 1 1111 0000 0014456 666
Q ss_pred EEEEEEcCCeEEEEECCCC-----eEEEEEeC-------CCCCEEEEEEcCCCCEEEEEe-----------CCeEEEEEc
Q 003177 701 RILAAAIENYISILDVETQ-----VCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-----------DELVRVWSI 757 (842)
Q Consensus 701 ~l~~~s~dg~I~IwDl~t~-----~~~~~l~~-------h~~~V~sl~~spdg~~Lasgs-----------Dg~I~IwDl 757 (842)
++++... |.|++.|+... .....+.. ..+.+.-++++++++.+++.. .+.|.++|.
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 6666555 99999996443 22222211 223444599999999888742 258999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCeEEEEc
Q 003177 758 GSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTLS 811 (842)
Q Consensus 758 ~s~~~~~~i~~~~~~~~~I~sv~~spdg~-~L~sgs-~dg~I~Iwdl~~~~~~~~~ 811 (842)
.+. +.+..+.. +..+..++++||++ +|++.. .++.|.++|..+++.+...
T Consensus 287 ~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 287 KTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 888 66666654 56899999999999 777776 4678999999999888443
No 264
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=1.3e-08 Score=115.98 Aligned_cols=228 Identities=12% Similarity=0.065 Sum_probs=151.2
Q ss_pred CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCE-EEEEeCC---CeEEEEEcCCCCceeeEeecCccceEEEEEcCCC
Q 003177 582 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 657 (842)
Q Consensus 582 g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~-Latgs~D---g~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg 657 (842)
..|.+-|.+..... .+.... .+...+|+|||+. ++..+.+ ..|+++|+.++.. ..+....+.+....|+|||
T Consensus 169 ~~l~~~d~dg~~~~-~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQK-VIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCcee-EEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 35666565544333 333333 7889999999985 6654443 4689999987653 3343455666778899999
Q ss_pred CcEEEEEeCC--CcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEEEEEeCCCCCE
Q 003177 658 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQV 732 (842)
Q Consensus 658 ~~llasgs~D--g~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~d-g--~I~IwDl~t~~~~~~l~~h~~~V 732 (842)
..++++.+.+ ..|+++|+.+++...............|+|+|+.|+..+.. + .|+++|+.+++....... ...
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 9888777655 46888898887755444333334567899999988877753 2 688899988766433321 111
Q ss_pred EEEEEcCCCCEEEEEe-C-------C--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEE
Q 003177 733 HSVCWNTSGEYLASVS-D-------E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLEL 799 (842)
Q Consensus 733 ~sl~~spdg~~Lasgs-D-------g--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg---~I~I 799 (842)
...|+|||++|+... . + .|.+.|+.++.. ..+... .......|+|||+.|+..+.++ .|.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 248999999988776 2 2 688888877632 223222 2233588999999888877654 5888
Q ss_pred EECCCCeEEEEccCCCCeeEEE
Q 003177 800 WNMTENKTLTLSAHDKLVSSLA 821 (842)
Q Consensus 800 wdl~~~~~~~~~~h~~~V~sla 821 (842)
+++.......+....+.|...+
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~p~ 418 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQSID 418 (419)
T ss_pred EecCCCeeEEeecCCCccCCCC
Confidence 8888877666655555554433
No 265
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=1.2e-10 Score=131.23 Aligned_cols=279 Identities=17% Similarity=0.296 Sum_probs=195.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCC-CeEEEEecc-CCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCC
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD 635 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t-~~~~~~l~~-h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~t~~ 635 (842)
.+.+.++.++|.|+-+|.++.-| +.+.|+.. +...+-+.. ..-.|-.+.|++. -.+-++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 34578899999999999998876 45556553 343333321 1234677888875 3344555555567789886432
Q ss_pred --ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc-eeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeE
Q 003177 636 --YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 711 (842)
Q Consensus 636 --~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I 711 (842)
..-..+.+|...|+++.|+|....++++|+.|-.|..||+++.. .+..+. -......+.|+.....+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 33456778999999999999999999999999999999999754 333332 35678899999988899999999999
Q ss_pred EEEECCCC-eEEEEEeCCCCCEEEEEEcCC--CCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003177 712 SILDVETQ-VCRLKLQGHKNQVHSVCWNTS--GEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 788 (842)
Q Consensus 712 ~IwDl~t~-~~~~~l~~h~~~V~sl~~spd--g~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L 788 (842)
.+||++.+ .++..+++|...|..+.|..- +..+.+..|++|+.||...... .-........+|..-.+.|-|.-.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCcceeccccccCcee
Confidence 99999976 778889999999999998753 3334434499999999976532 222222345667777777765433
Q ss_pred EEEE--cCCeEEEEECC---------CC-eEE-EEccCCCCeeEEEEeCCCC----------EEEEEeCCCcEEEc
Q 003177 789 LVIG--CYETLELWNMT---------EN-KTL-TLSAHDKLVSSLAASTVNG----------MVASASHDKCVKIW 841 (842)
Q Consensus 789 ~sgs--~dg~I~Iwdl~---------~~-~~~-~~~~h~~~V~sla~spdg~----------~Lasgs~DG~V~IW 841 (842)
++-- .+..|.+++.+ ++ ..+ ++.+|.+.|..+-|-..+. .|+|-+.|..|++|
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 3222 22244444433 22 222 7889999988777643221 69999999999999
No 266
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.19 E-value=3.3e-09 Score=116.25 Aligned_cols=269 Identities=17% Similarity=0.195 Sum_probs=185.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC---------------
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--------------- 624 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--------------- 624 (842)
.-++..++|||.|.+|++.... .|.+|+...+..+..+. | ..|..+.|+|+++||.|-+..+
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred CcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 3458889999999999987654 58999988777665553 4 4599999999999999876533
Q ss_pred eEEEEEcCCCCceeeEeecCccc--eE-EEEEcCCCCcEEEEEeCCCcEEEEECCCCcee----eEEeecCCeeEEEEeC
Q 003177 625 TVRVWDTENPDYSLRTFTGHSTT--VM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----GVFKCQSGATQMRFQP 697 (842)
Q Consensus 625 ~I~IWDl~t~~~~i~~~~~h~~~--V~-sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i----~~~~~~~~i~~v~~sp 697 (842)
.+.|||+.++.. +..+..-..+ .+ -+.|+.+..+.+-. ....++|+++ ++... ..++ ..++....|+|
T Consensus 109 ~~~vwd~~sg~i-v~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr-~~gi~dFsisP 183 (561)
T COG5354 109 NVFVWDIASGMI-VFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLR-PVGILDFSISP 183 (561)
T ss_pred ceeEEeccCcee-EeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhcc-ccceeeEEecC
Confidence 499999998653 6666655544 44 67788776544333 2457899997 33221 1111 36788889999
Q ss_pred CCCE--EEEE-----EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe------------CCeEEEEEcC
Q 003177 698 RLGR--ILAA-----AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS------------DELVRVWSIG 758 (842)
Q Consensus 698 ~g~~--l~~~-----s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs------------Dg~I~IwDl~ 758 (842)
.++. |++- ...+.+++|.+..+..+....-....-..+.|.+.|++|++-. +..++|+++.
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 6443 3332 2357899999886655544332233335688999998876431 2468888887
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCC-
Q 003177 759 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD- 835 (842)
Q Consensus 759 s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~--dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~D- 835 (842)
.. .+.......++|..++|.|.++.+++++. .-.+.++|++.. +.+......-+.+.|+|.+++++.++-|
T Consensus 264 e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 264 ER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred cc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCc
Confidence 43 22222255789999999999988777763 458999999887 4455555666778888888888887765
Q ss_pred --CcEEEcC
Q 003177 836 --KCVKIWK 842 (842)
Q Consensus 836 --G~V~IWd 842 (842)
|.|-|||
T Consensus 338 l~gni~i~~ 346 (561)
T COG5354 338 LQGNIEIFD 346 (561)
T ss_pred cccceEEec
Confidence 4566664
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.19 E-value=1.6e-08 Score=114.13 Aligned_cols=252 Identities=13% Similarity=0.074 Sum_probs=161.3
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEE
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 651 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl 651 (842)
+..|++++.+|.|+.+|..+|+.+..+.........+.. ++..+++++.++.|+.+|..+++.. ..... ...+.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~-W~~~~-~~~~~~~ 140 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKEL-WRAKL-SSEVLSP 140 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEe-eeecc-CceeecC
Confidence 568888889999999999999988766544332223332 4678888889999999999887753 22221 1222221
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeE------EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003177 652 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ------MRFQPRLGRILAAAIENYISILDVETQVCRLKL 725 (842)
Q Consensus 652 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~------v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l 725 (842)
-.. .++ .++.++.++.|+.||.++++.+..+........ ..+ .++.++++..++.+..+|.++++.+...
T Consensus 141 p~v-~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 141 PLV-ANG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CEE-ECC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 111 123 344566799999999999998887765433211 112 2357788888899999999999877654
Q ss_pred eCCCC----C------E-EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003177 726 QGHKN----Q------V-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 793 (842)
Q Consensus 726 ~~h~~----~------V-~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~ 793 (842)
..... . + .+..+ .+..+++++ ++.++.||..++ +.+..... ....... ..+..|++++.
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG---~~~W~~~~--~~~~~p~--~~~~~vyv~~~ 287 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSG---RVLWKRDA--SSYQGPA--VDDNRLYVTDA 287 (377)
T ss_pred ccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCC---cEEEeecc--CCccCce--EeCCEEEEECC
Confidence 31100 0 0 01111 234555555 999999999887 44443331 1112222 34567888999
Q ss_pred CCeEEEEECCCCeEEEEc-cCC-CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 794 YETLELWNMTENKTLTLS-AHD-KLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 794 dg~I~Iwdl~~~~~~~~~-~h~-~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+|.|+.+|..+++.+... ... ..+..... .+..|++++.||.|++||
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 999999999999877322 211 22223233 366888899999998875
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.18 E-value=2.1e-08 Score=108.77 Aligned_cols=282 Identities=13% Similarity=0.094 Sum_probs=187.5
Q ss_pred cccccccCC-CeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC-CCeEEEEeccCCCC--eEEEEEcCC
Q 003177 538 VGRSAEVGK-GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQW--ITDVRFSPS 613 (842)
Q Consensus 538 ~~~~~~~~~-g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~-t~~~~~~l~~h~~~--I~~l~fspd 613 (842)
-+.+|-... |.+|+.+..+.+| |+|-.+-. ++..+....||.=.+|.++ .|+- ++.|+.. -.+=..+.|
T Consensus 205 rGklWis~d~g~tFeK~vdl~~~---vS~PmIV~-~RvYFlsD~eG~GnlYSvdldGkD---lrrHTnFtdYY~R~~nsD 277 (668)
T COG4946 205 RGKLWISSDGGKTFEKFVDLDGN---VSSPMIVG-ERVYFLSDHEGVGNLYSVDLDGKD---LRRHTNFTDYYPRNANSD 277 (668)
T ss_pred cceEEEEecCCcceeeeeecCCC---cCCceEEc-ceEEEEecccCccceEEeccCCch---hhhcCCchhccccccCCC
Confidence 344454443 4588888888887 44433332 3344455667665566443 2222 2223321 223334568
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeEee-----cCc-----cceEEE-EEcCCCCcEEEEEeCCCcEEEEECCCCceee
Q 003177 614 LSRLATSSADRTVRVWDTENPDYSLRTFT-----GHS-----TTVMSL-DFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 682 (842)
Q Consensus 614 g~~Latgs~Dg~I~IWDl~t~~~~i~~~~-----~h~-----~~V~sl-~fspdg~~llasgs~Dg~I~vwDl~t~~~i~ 682 (842)
|+.|+.. ..|.|++||.++.......+. ... .++.-+ .|++-...+++..+ .|...+.+...+-.+
T Consensus 278 GkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~i- 354 (668)
T COG4946 278 GKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSI- 354 (668)
T ss_pred CcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeE-
Confidence 8888765 567899999987553211111 000 111111 14444444666666 567777776654433
Q ss_pred EEeecCCeeEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003177 683 VFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 760 (842)
Q Consensus 683 ~~~~~~~i~~v~~sp~g~~l~~~s~dg-~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 760 (842)
.+....+|.-..+..+...++.|..|| .+-|||.++++.... ...-+.|.++..+++|++++++. ...|.++|+.++
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence 334456688888888888899999998 899999998875544 44667899999999999999998 558999999998
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC----eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEe
Q 003177 761 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 761 ~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg----~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs 833 (842)
. ....-....+-|+.++|||++++|+.+--+| .|++||+.+++........+.=.+-+|.||+++|.--+
T Consensus 434 n---v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 434 N---VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred C---eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 3 3333334567899999999999999987777 79999999999986665555556778999999876544
No 269
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.18 E-value=2.3e-09 Score=112.28 Aligned_cols=240 Identities=15% Similarity=0.268 Sum_probs=168.1
Q ss_pred CcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCC------------CCeEEEEEcCCC
Q 003177 505 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST------------SKVESCHFSPDG 572 (842)
Q Consensus 505 ~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~------------~~V~sv~fSpdg 572 (842)
..++-...++++|+.+|.|.+|.......+ .+.....+..|. .+|..+.|.+++
T Consensus 31 vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--------------ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 31 VEFDHYGERLATGDKGGRVVLFEREKLYKG--------------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG 96 (433)
T ss_pred EEeecccceEeecCCCCeEEEeeccccccc--------------ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC
Confidence 334445589999999999999955444321 222223333333 468899999866
Q ss_pred C--EEEEEECCCcEEEEecCCCeE-----------------------------------EEEe-ccCCCCeEEEEEcCCC
Q 003177 573 K--LLATGGHDKKAVLWCTESFTV-----------------------------------KSTL-EEHTQWITDVRFSPSL 614 (842)
Q Consensus 573 ~--~Lasgs~Dg~I~vwd~~t~~~-----------------------------------~~~l-~~h~~~I~~l~fspdg 614 (842)
. .++..+.|.+|++|.+..... .+.+ ..|+.-|.+|.++.|.
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 5 567778899999997642111 0111 3688889999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCcee--eEeecC-----ccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce----eeE
Q 003177 615 SRLATSSADRTVRVWDTENPDYSL--RTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGV 683 (842)
Q Consensus 615 ~~Latgs~Dg~I~IWDl~t~~~~i--~~~~~h-----~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~----i~~ 683 (842)
..++++ +|=.|.+|+++-..... .-++.+ +..|++..|+|..-.+++-.+..|+|++.|++.... .+.
T Consensus 177 Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 177 ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 998887 57789999987543322 223333 356889999998888888888899999999984321 111
Q ss_pred Eee-------------cCCeeEEEEeCCCCEEEEEEcCCeEEEEECC-CCeEEEEEeCCCC------------C---EEE
Q 003177 684 FKC-------------QSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKN------------Q---VHS 734 (842)
Q Consensus 684 ~~~-------------~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~-t~~~~~~l~~h~~------------~---V~s 734 (842)
+.. -..|..+.|++.|+++++-.. -+|++||+. ..+++.++.-|.. . -..
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 111 134788999999988876433 789999994 5567777665532 2 246
Q ss_pred EEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003177 735 VCWNTSGEYLASVS-DELVRVWSIGSG 760 (842)
Q Consensus 735 l~~spdg~~Lasgs-Dg~I~IwDl~s~ 760 (842)
++|+.++.++.+|+ .+.+++|++..+
T Consensus 335 c~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 335 CSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred EEEcCCcceEecccccceEEEecCCCC
Confidence 78999999999999 889999997655
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.15 E-value=3.8e-09 Score=117.97 Aligned_cols=188 Identities=19% Similarity=0.306 Sum_probs=149.8
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeEeec---CccceEEEEE------cC-------------CCCcEEEEEeCCCc
Q 003177 612 PSLSRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDF------HP-------------SKEDLLCSCDNNSE 669 (842)
Q Consensus 612 pdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~---h~~~V~sl~f------sp-------------dg~~llasgs~Dg~ 669 (842)
|...++|....||.++|||...+.. ...+.. -++..++..| +| .+..+++-|...|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~-~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQL-QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhheEeecCCCCeEEEEEccCcee-eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 4467899999999999999987653 222221 1233344443 22 22446778888999
Q ss_pred EEEEECCCCceeeEEe---ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 003177 670 IRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 746 (842)
Q Consensus 670 I~vwDl~t~~~i~~~~---~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Las 746 (842)
|.+|++..++....+. +.+.|.++.++.+-+.|.+++.|..+..|+......+..+......+.+++++|||..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999999988887 3567999999999999999999999999999999999999999999999999999998886
Q ss_pred EeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC-----CCEEEEEEc-CCeEEEEECCC
Q 003177 747 VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----FPSLLVIGC-YETLELWNMTE 804 (842)
Q Consensus 747 gsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spd-----g~~L~sgs~-dg~I~Iwdl~~ 804 (842)
++ +.|++||+.+. +.+..|.+|.++|.++.|..+ |.+++++.. +..+.+|-+..
T Consensus 162 as-~~ik~~~~~~k---evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS-RQIKVLDIETK---EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc-ceEEEEEccCc---eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 64 67999999998 899999999999999999877 666665544 44566775543
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=1.3e-08 Score=114.70 Aligned_cols=306 Identities=11% Similarity=0.174 Sum_probs=198.1
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~ 590 (842)
.+++++|+.|+.+++.....+.+.....+ ......+.--+++.||++.|.-+.|+.+...|-+...+|.|.||-+-
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmly 101 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLY 101 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeee
Confidence 48999999999999985554433222222 11223445567899999999999999999999999999999999887
Q ss_pred CCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--------------------------------
Q 003177 591 SFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-------------------------------- 636 (842)
Q Consensus 591 t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~-------------------------------- 636 (842)
.+.-.... ....+.|.+++|+.||..|+..-.||.|.|=.++.+..
T Consensus 102 kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~h 181 (1189)
T KOG2041|consen 102 KGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETH 181 (1189)
T ss_pred cccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEE
Confidence 76543222 23456789999999999998888888777654442110
Q ss_pred ---------------e-ee---EeecCccceEEEEEc--------CCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCC
Q 003177 637 ---------------S-LR---TFTGHSTTVMSLDFH--------PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 689 (842)
Q Consensus 637 ---------------~-i~---~~~~h~~~V~sl~fs--------pdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~ 689 (842)
+ +. .+......|..+.|. |+ .-.++.|..+|.+.+..-.+......+...-.
T Consensus 182 lydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pd-rP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~ 260 (1189)
T KOG2041|consen 182 LYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPD-RPRLAVCYANGRMQIMRSENDPEPVVVDTGMK 260 (1189)
T ss_pred EecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCC-CCEEEEEEcCceehhhhhcCCCCCeEEecccE
Confidence 0 00 011111234455553 23 33566777788877766555554555555567
Q ss_pred eeEEEEeCCCCEEEEEEcCC---------eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003177 690 ATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 760 (842)
Q Consensus 690 i~~v~~sp~g~~l~~~s~dg---------~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~ 760 (842)
+..+.|+++|..+++++.+. .|.+|.. -|+.+.+++.....|++++|-..|-.++.+-|+.|++=+++..
T Consensus 261 ~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 261 IVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPE 339 (1189)
T ss_pred eecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeeccc
Confidence 88999999999999888642 3444443 3677778888888999999999999999999999999998865
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 003177 761 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 838 (842)
Q Consensus 761 ~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V 838 (842)
... ..+. . .+.|--.++-+ -.-.|.+||..+.+.. ....| ..+++++.+--.|++-.+||.|
T Consensus 340 ykW---gy~e---~---TvVy~y~~~e~----p~y~i~Fwdtk~nek~vK~V~~---~~~~a~~~ehCvL~~~~d~~~i 402 (1189)
T KOG2041|consen 340 YKW---GYIE---E---TVVYVYQKEEL----PQYGIMFWDTKTNEKTVKTVTH---FENMAFYREHCVLINRQDDGVI 402 (1189)
T ss_pred ceE---EEee---e---EEEEEEccCCC----cceEEEEEecccChhhhhhhcc---eeehheecccEEEEeccccCCC
Confidence 211 1110 0 01111000000 0115889998876544 22233 3355555555555555555554
No 272
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.13 E-value=1.4e-09 Score=112.14 Aligned_cols=238 Identities=17% Similarity=0.334 Sum_probs=163.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCe-----EEEEeccCC------------CCeEEEEEcCCC--CEEEEE
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLATS 620 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~-----~~~~l~~h~------------~~I~~l~fspdg--~~Latg 620 (842)
...|+++.|...|.||++|...|.|.+|.-+... ....+.+|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4569999999999999999999999999754322 222344443 347888887753 356677
Q ss_pred eCCCeEEEEEcCCCC-----------------------------------------ceeeEe-ecCccceEEEEEcCCCC
Q 003177 621 SADRTVRVWDTENPD-----------------------------------------YSLRTF-TGHSTTVMSLDFHPSKE 658 (842)
Q Consensus 621 s~Dg~I~IWDl~t~~-----------------------------------------~~i~~~-~~h~~~V~sl~fspdg~ 658 (842)
+.|++|++|.+.... .+.+.+ ..|...|.+|.|..+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 799999999876431 001112 35777888999998877
Q ss_pred cEEEEEeCCCcEEEEECCCCc-eeeEEee--------cCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCe------EE
Q 003177 659 DLLCSCDNNSEIRYWSINNGS-CAGVFKC--------QSGATQMRFQPRL-GRILAAAIENYISILDVETQV------CR 722 (842)
Q Consensus 659 ~llasgs~Dg~I~vwDl~t~~-~i~~~~~--------~~~i~~v~~sp~g-~~l~~~s~dg~I~IwDl~t~~------~~ 722 (842)
.+| ++ +|-.|.+|++.-.. +...... ..-|++..|+|.. ..+...+..|.|++-|++... .+
T Consensus 186 t~l-Sa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLL-SA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eee-ec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 555 44 48889999987432 2222221 1237888999964 456677788999999998321 11
Q ss_pred EE----------EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC------------Cce---E
Q 003177 723 LK----------LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------NKF---H 777 (842)
Q Consensus 723 ~~----------l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~------------~~I---~ 777 (842)
.. +.+-...|..+.|+++|+|+++-+--+|+|||++... .++.++..|. ..| .
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeeeE
Confidence 11 1122346788999999999999888899999998764 4555554332 122 4
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 778 SCVFHPTFPSLLVIGCYETLELWN 801 (842)
Q Consensus 778 sv~~spdg~~L~sgs~dg~I~Iwd 801 (842)
.|.|+.+...+++|+..+..-||-
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEecCCcccccccccccceeeec
Confidence 577888888888888777666665
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=5.1e-08 Score=122.65 Aligned_cols=238 Identities=12% Similarity=0.143 Sum_probs=160.7
Q ss_pred EEEEEcCC-CCEEEEEECCCcEEEEecCCCeEEEEecc-C-------------CCCeEEEEEcCCCCEEEEEeC-CCeEE
Q 003177 564 ESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEE-H-------------TQWITDVRFSPSLSRLATSSA-DRTVR 627 (842)
Q Consensus 564 ~sv~fSpd-g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~-h-------------~~~I~~l~fspdg~~Latgs~-Dg~I~ 627 (842)
..++++++ +.++++-+..+.|++||... ..+..+.+ . -.....|++.+++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788874 55666667788999999764 44444422 1 123578999998887666654 56799
Q ss_pred EEEcCCCCceeeEeecC-----------------ccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee----
Q 003177 628 VWDTENPDYSLRTFTGH-----------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---- 686 (842)
Q Consensus 628 IWDl~t~~~~i~~~~~h-----------------~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---- 686 (842)
++|+.++. +.++.+- -....+++|+|++..++++...++.|++||..++........
T Consensus 650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99987643 3333211 123468999997777888888899999999987754321110
Q ss_pred -----------cCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEEeC-------------C--------CCCEE
Q 003177 687 -----------QSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQG-------------H--------KNQVH 733 (842)
Q Consensus 687 -----------~~~i~~v~~sp~g~~l~~~s-~dg~I~IwDl~t~~~~~~l~~-------------h--------~~~V~ 733 (842)
-.....++++|+++.++++. .++.|++||+.++.......+ + -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12345699999998666555 468999999987643221100 0 11246
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-------------cCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003177 734 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------------CTGNKFHSCVFHPTFPSLLVIGCYETLEL 799 (842)
Q Consensus 734 sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-------------~~~~~I~sv~~spdg~~L~sgs~dg~I~I 799 (842)
+++++++|.++++.. ++.|++||..++. ...... ..-.....++++++|..+++-+.++.|++
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~---v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKR---VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCe---EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 889999998777766 8899999998762 221111 11135678999999987777777889999
Q ss_pred EECCCCeE
Q 003177 800 WNMTENKT 807 (842)
Q Consensus 800 wdl~~~~~ 807 (842)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99988764
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.11 E-value=4.2e-08 Score=123.47 Aligned_cols=232 Identities=11% Similarity=0.123 Sum_probs=156.5
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeeEeec--C------------ccceEEEEEcCCCCcEEEEEeCCCcE
Q 003177 606 TDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTG--H------------STTVMSLDFHPSKEDLLCSCDNNSEI 670 (842)
Q Consensus 606 ~~l~fspd-g~~Latgs~Dg~I~IWDl~t~~~~i~~~~~--h------------~~~V~sl~fspdg~~llasgs~Dg~I 670 (842)
..++++++ +.++++-+..+.|++||... .. +..+.+ . -.....|+++++++.++++-..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788874 55666767788999999864 32 222221 1 12357899999877666555566789
Q ss_pred EEEECCCCceeeEEee------------------cCCeeEEEEeCCCCEE-EEEEcCCeEEEEECCCCeEEEEEeCC---
Q 003177 671 RYWSINNGSCAGVFKC------------------QSGATQMRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGH--- 728 (842)
Q Consensus 671 ~vwDl~t~~~i~~~~~------------------~~~i~~v~~sp~g~~l-~~~s~dg~I~IwDl~t~~~~~~l~~h--- 728 (842)
+++|+.++... ++.. -.....++++|+++.+ ++.+.++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE 726 (1057)
T ss_pred EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence 99999876533 2211 0124578999955554 555567899999998775432 2111
Q ss_pred ------------CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEE-----------EeecC--------CCc
Q 003177 729 ------------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH-----------ELSCT--------GNK 775 (842)
Q Consensus 729 ------------~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~-----------~~~~~--------~~~ 775 (842)
-.....|+|+|++..|+++. ++.|++||+.++.. ..+. .+... -..
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccC
Confidence 12346799999998666655 78999999987532 1110 00000 112
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccC--------------CCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 776 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH--------------DKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 776 I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h--------------~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
...++++++|..+++-..++.|++||..++.+..+.+. -.....|+++++|+++++-+.+++|++|
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 46889999998777777788999999998877654332 1257889999999999988899999999
Q ss_pred C
Q 003177 842 K 842 (842)
Q Consensus 842 d 842 (842)
|
T Consensus 886 d 886 (1057)
T PLN02919 886 D 886 (1057)
T ss_pred E
Confidence 6
No 275
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=3.5e-09 Score=124.59 Aligned_cols=196 Identities=14% Similarity=0.215 Sum_probs=156.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCC----eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----ITDVRFSPSLSRLATSSADRTVRVWDTENPD 635 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~----I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~ 635 (842)
.+.|....+..+.+.++.++.++.+.+||...+.....+...... ..-+-++++.-++++|+.-+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 344555666677889999999999999999887776665432221 1223456677789999999999999998544
Q ss_pred ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceee--EEeecCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 003177 636 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAIENYISI 713 (842)
Q Consensus 636 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~--~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~I 713 (842)
.+. .+.+|.+.|.++.|+-+|. +++++++|.++++|++++.+... .|.+...+..++|.|. .+++++.|-+.++
T Consensus 167 ~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 167 KPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred Ccc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEE
Confidence 433 6889999999999999977 67799999999999999987665 5667788999999998 9999999999999
Q ss_pred EECCCCeEEEEEeCCC-CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003177 714 LDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 760 (842)
Q Consensus 714 wDl~t~~~~~~l~~h~-~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 760 (842)
|+.+.. ....+..|. ..|..++..++...++++. |+.+++||+...
T Consensus 243 W~~~~~-~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 243 WGVNGT-QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eecccc-eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 976643 333666665 4688999988888888888 999999998754
No 276
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=4.4e-08 Score=111.71 Aligned_cols=200 Identities=10% Similarity=0.036 Sum_probs=135.0
Q ss_pred eEEEEEcCCCCceeeEeecCccceEEEEEcCCCCc-EEEEEeC--CCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCE
Q 003177 625 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 701 (842)
Q Consensus 625 ~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~-llasgs~--Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~ 701 (842)
.|.+-|.+... .+.+.... .+....|+|+|+. ++++... +..|+++|+.+++........+......|+||++.
T Consensus 170 ~l~~~d~dg~~--~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 170 NIVLADYTLTY--QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSK 246 (419)
T ss_pred eEEEECCCCCc--eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCE
Confidence 55555555332 33333333 7789999999986 4433332 45799999998887666655555677889999988
Q ss_pred EEEEEc---CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEEcCCCCCceeEEEeecCCC
Q 003177 702 ILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE----LVRVWSIGSGSKGECIHELSCTGN 774 (842)
Q Consensus 702 l~~~s~---dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg----~I~IwDl~s~~~~~~i~~~~~~~~ 774 (842)
++.... +..|+++|+.++... .+..+........|+|||+.|+..++. .|+++|+.++.. .. +.....
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~---~r-lt~~g~ 321 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV---EQ-VVFHGK 321 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe---Ee-CccCCC
Confidence 776543 357889999887643 344344434566899999988877733 788889887632 11 111111
Q ss_pred ceEEEEEeCCCCEEEEEEcC---------CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCC
Q 003177 775 KFHSCVFHPTFPSLLVIGCY---------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 835 (842)
Q Consensus 775 ~I~sv~~spdg~~L~sgs~d---------g~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~D 835 (842)
. ...|+|+|++|+..+.. ..|++.|+.++....+... .......|+|||+.|+..+.+
T Consensus 322 ~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 322 N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 1 24899999999888754 2688999998887655543 233468999999977766543
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.09 E-value=9.7e-08 Score=118.11 Aligned_cols=282 Identities=15% Similarity=0.210 Sum_probs=185.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEE----ecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE- 632 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vw----d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~- 632 (842)
...+.|.++.|-++..-|+.+..+|.|.++ +..+.. +.....-...|.+++||||+..|+..+.+++|.+-+-+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 345779999999999999999999999999 554432 22333455789999999999999999999988875422
Q ss_pred ---------C---CC-ce--------eeEeec------------------------CccceEEEEEcCCCCcEEEEEe--
Q 003177 633 ---------N---PD-YS--------LRTFTG------------------------HSTTVMSLDFHPSKEDLLCSCD-- 665 (842)
Q Consensus 633 ---------t---~~-~~--------i~~~~~------------------------h~~~V~sl~fspdg~~llasgs-- 665 (842)
. +. .. -..|.| +...-..|+|-.||.++.++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 0 00 00 000100 2334567899999986665543
Q ss_pred C---CCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEc---CCeEEEEECCCC---eEEEEEeCCCCCEEEE
Q 003177 666 N---NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI---ENYISILDVETQ---VCRLKLQGHKNQVHSV 735 (842)
Q Consensus 666 ~---Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~---dg~I~IwDl~t~---~~~~~l~~h~~~V~sl 735 (842)
. -..|+||+-+ |....+... .+--.+++|.|.|+.|++.-. ...|.+|+-+.- +....+......|..+
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence 2 2589999976 654444432 233567899999998888775 345666664432 2222222345689999
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCE-EEEEEcCCeEEEEEC----CCC----
Q 003177 736 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPS-LLVIGCYETLELWNM----TEN---- 805 (842)
Q Consensus 736 ~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~~spdg~~-L~sgs~dg~I~Iwdl----~~~---- 805 (842)
.|++|+.+|+..-...|.+|-..+. .......+... ...+..+.|+|.... |.+.+.++.+..+++ ..+
T Consensus 311 ~Wn~ds~iLAv~~~~~vqLWt~~NY-HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDRVQLWTRSNY-HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCCceEEEeeCC-EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 9999999999977666999998764 21222333322 233455899997643 555555565544432 111
Q ss_pred ------------eEEE----------------EccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 806 ------------KTLT----------------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 806 ------------~~~~----------------~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
..+. .......|.+++|++++..+++-..||.|.+|+
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 1110 112356799999999998899999999998874
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.07 E-value=1.7e-07 Score=101.93 Aligned_cols=171 Identities=15% Similarity=0.155 Sum_probs=134.4
Q ss_pred CCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEEcCCCCceeeEeecCccceE
Q 003177 571 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVM 649 (842)
Q Consensus 571 dg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg-~I~IWDl~t~~~~i~~~~~h~~~V~ 649 (842)
+|.+++..+. |.+.|.+...+-.+.. +|...|.-..+..+++-++.|..|| .|-|||.++++ ++.+...-+.|.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~ 405 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIE 405 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCccceE
Confidence 7889999886 7888887665544432 5778899999999988999999999 89999999765 566677778999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCC----eEEEEECCCCeEEEE
Q 003177 650 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN----YISILDVETQVCRLK 724 (842)
Q Consensus 650 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg----~I~IwDl~t~~~~~~ 724 (842)
++..+++|+.++ .+.....|.++|+.++.....-+. .+-|+.+.|+|++++++.+--+| .|++||+.+++....
T Consensus 406 av~vs~dGK~~v-vaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 406 AVKVSPDGKKVV-VANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred EEEEcCCCcEEE-EEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 999999988554 666788999999999876544433 35599999999999999887766 689999998876654
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEe
Q 003177 725 LQGHKNQVHSVCWNTSGEYLASVS 748 (842)
Q Consensus 725 l~~h~~~V~sl~~spdg~~Lasgs 748 (842)
.. ..+.=.+-+|.||+++|..-+
T Consensus 485 TT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 485 TT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cC-CcccccCcccCCCCcEEEEEe
Confidence 43 333345678999999876544
No 279
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=6.3e-08 Score=110.46 Aligned_cols=210 Identities=14% Similarity=0.175 Sum_probs=154.9
Q ss_pred eeeEEEEecCCCCCeEEEEEcCC------C------CEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcC---C
Q 003177 549 TFTEFQLIPASTSKVESCHFSPD------G------KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---S 613 (842)
Q Consensus 549 ~~~~i~~l~gH~~~V~sv~fSpd------g------~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fsp---d 613 (842)
.+..+.++.-|...|+.+.|.|- + -+||++...|.|.+||...+..+..+..|.++|..++|.+ +
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence 44567888999999999999872 1 2578888899999999999988889999999999999977 3
Q ss_pred C-CEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-------CceeeEEe
Q 003177 614 L-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFK 685 (842)
Q Consensus 614 g-~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-------~~~i~~~~ 685 (842)
. ..|+.-....+|.+|+.++++. +..+........|+.+.|-...-++.-+..|.|.+.+.-. ++......
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s 202 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS 202 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence 3 4667777788999999999876 4555555566788999987665565666677776665421 11111111
Q ss_pred ec-C-----------------C--------eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcC
Q 003177 686 CQ-S-----------------G--------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 739 (842)
Q Consensus 686 ~~-~-----------------~--------i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~sp 739 (842)
.+ + + ...++|+|.-+.++.......+.|+|++-..++....-..+.+.-+.|-|
T Consensus 203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP 282 (1062)
T KOG1912|consen 203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLP 282 (1062)
T ss_pred CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEecc
Confidence 10 0 0 12356788888888888889999999998888887776777777777777
Q ss_pred CC--CEEEEEe-CCeEEEEEcCC
Q 003177 740 SG--EYLASVS-DELVRVWSIGS 759 (842)
Q Consensus 740 dg--~~Lasgs-Dg~I~IwDl~s 759 (842)
++ ..|++.. ||.+.+|-.+.
T Consensus 283 ~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 283 DPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred CCCcceEEEEecCCeEEEEEeec
Confidence 65 4677776 99988887554
No 280
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.00 E-value=3.1e-08 Score=102.21 Aligned_cols=241 Identities=12% Similarity=0.100 Sum_probs=162.6
Q ss_pred CCCeEEEEEcC---CCC-EEEEEECCCcEEEEecCCCeEEEEeccCC------CCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003177 560 TSKVESCHFSP---DGK-LLATGGHDKKAVLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSADRTVRVW 629 (842)
Q Consensus 560 ~~~V~sv~fSp---dg~-~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~------~~I~~l~fspdg~~Latgs~Dg~I~IW 629 (842)
+..+..+.|.. +|. .|+-+..+|.|.+|..........+.+-+ ....++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34466666653 455 56667778999999766544444443221 124578899989999999999999855
Q ss_pred EcCCCC-ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCceeeE--EeecCCeeEEEEeC-CCCEEEE
Q 003177 630 DTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FKCQSGATQMRFQP-RLGRILA 704 (842)
Q Consensus 630 Dl~t~~-~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~--~~~~~~i~~v~~sp-~g~~l~~ 704 (842)
+..... ..+..++.|.-+++...|+....+++++|++|+.+..||++ .++++.. ..+..+|.++.-+| ...++++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 544332 22347889999999999998888999999999999999999 3444433 23567888988876 4668999
Q ss_pred EEcCCeEEEEECCC-CeEEEEEeCCCCCEEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCc--eeEEEeecCCCceEEE
Q 003177 705 AAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKG--ECIHELSCTGNKFHSC 779 (842)
Q Consensus 705 ~s~dg~I~IwDl~t-~~~~~~l~~h~~~V~sl~~spdg--~~LasgsDg~I~IwDl~s~~~~--~~i~~~~~~~~~I~sv 779 (842)
|+.|..|++||.++ ++++..-. -.+.|..++++|.- .+|+++--.-++|-+....... ......+.|.+-...-
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred eccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecc
Confidence 99999999999994 56665443 44789999999853 3455555444667666554321 1333444555555555
Q ss_pred EEeCCCCEEEEEEc-CCeEE-EEE
Q 003177 780 VFHPTFPSLLVIGC-YETLE-LWN 801 (842)
Q Consensus 780 ~~spdg~~L~sgs~-dg~I~-Iwd 801 (842)
.|.....+|++++. |..++ +|-
T Consensus 308 DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 308 DWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ccccccceeeeeeccccceeeeee
Confidence 56444455666553 33433 554
No 281
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.99 E-value=8.6e-09 Score=108.14 Aligned_cols=244 Identities=13% Similarity=0.210 Sum_probs=175.2
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEE
Q 003177 594 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 672 (842)
Q Consensus 594 ~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t-~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~v 672 (842)
.+..+++|.+.|++...-|...-+++.+.|.+++||--.+ +..-......-..+++++.+.++.. .|+.+-..|++.-
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvte 94 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceEEE
Confidence 4567789999999999999888999999999999996543 3322223333457889999998855 5668888999988
Q ss_pred EECCC----CceeeEE-eecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003177 673 WSINN----GSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 747 (842)
Q Consensus 673 wDl~t----~~~i~~~-~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasg 747 (842)
+.+.. ....+.+ .+...+..+.|+.....+++.+.|..+.---.+.+..+..+. .....+++.+.-. +...|
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fvG 171 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFVG 171 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEec
Confidence 87643 2222222 245678888898888889988888776554444443322111 0011111111111 34444
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE--EEEccCCCCeeEEEEeC
Q 003177 748 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT--LTLSAHDKLVSSLAAST 824 (842)
Q Consensus 748 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~--~~~~~h~~~V~sla~sp 824 (842)
. .|.|.+-.+.... ...+.++.+|.+.+.+++|.+....|+++..|..|.+||+-..+- ..+.+|...|..+...+
T Consensus 172 d~~gqvt~lr~~~~~-~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNG-CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred ccccceEEEEEeecC-CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 4 5656555554322 267888999999999999999999999999999999999866554 47889999999999888
Q ss_pred CCCEEEEEeCCCcEEEcC
Q 003177 825 VNGMVASASHDKCVKIWK 842 (842)
Q Consensus 825 dg~~Lasgs~DG~V~IWd 842 (842)
--+.|++++.||.|.+||
T Consensus 251 ~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hheeeeeccCCCeEEEEe
Confidence 889999999999999996
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.98 E-value=6.9e-08 Score=98.39 Aligned_cols=249 Identities=9% Similarity=0.014 Sum_probs=165.7
Q ss_pred CCCcEEEEecCCCe--EEEEeccCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEE
Q 003177 580 HDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 652 (842)
Q Consensus 580 ~Dg~I~vwd~~t~~--~~~~l~~h~~~I~~l~fsp-----dg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~ 652 (842)
....|.+|++.+.. .+... ..+.|.| ...+|+.|+..|...+|...+..........|...|+-+.
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 33456777765432 22222 3344444 3458999999999999999977665555555555444332
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-eEE-E-EEeCC
Q 003177 653 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQ-VCR-L-KLQGH 728 (842)
Q Consensus 653 fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~-~~~-~-~l~~h 728 (842)
=.-+...-+..++.|.++++.++.-+......... -...++.+++++++.++.+....|..|.+... +.+ . .....
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 22222333446788999999988754433333222 33789999999999999999999999988754 222 2 23334
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce--eEEEeecCCCceEEEEEeCCCC--EEEEEEcCCeEEEEECC
Q 003177 729 KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFP--SLLVIGCYETLELWNMT 803 (842)
Q Consensus 729 ~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~--~i~~~~~~~~~I~sv~~spdg~--~L~sgs~dg~I~Iwdl~ 803 (842)
...-.+..|+.....+|++. ||++.|||++...... ....-..|.+.+..|.|++.|. .|+..-.-+.+.+.|++
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 45567889999999999999 9999999999764321 1222345789999999998774 45666666799999999
Q ss_pred CCeEE--------EEccCCC-CeeEEEEeCCCCEEEEEeCC
Q 003177 804 ENKTL--------TLSAHDK-LVSSLAASTVNGMVASASHD 835 (842)
Q Consensus 804 ~~~~~--------~~~~h~~-~V~sla~spdg~~Lasgs~D 835 (842)
+++-. ....|.. .|..-.|+.++..+.+.+++
T Consensus 283 ~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 283 NYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred cCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 88644 1223333 37777888777666555543
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=2.1e-09 Score=131.28 Aligned_cols=209 Identities=16% Similarity=0.239 Sum_probs=164.6
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee--cCCeeE
Q 003177 615 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQ 692 (842)
Q Consensus 615 ~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~~ 692 (842)
..+..+..++...-|..+... .....+-..|.++.-+|...+++ +|+.||.|++|....+..+..++. ...++.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr 2256 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTR 2256 (2439)
T ss_pred ccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhhh
Confidence 344444455666666655433 23344556788888889877555 999999999999998888877775 456889
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEE
Q 003177 693 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHE 768 (842)
Q Consensus 693 v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~ 768 (842)
+.|+..|+.+.++..||.+.+|.+. .++....+.|....+.+.|-. ..+++.+ ++.+.+||.--.....+++
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~- 2332 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH- 2332 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-
Confidence 9999999999999999999999988 677777888998888888865 5555544 5699999986654445666
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 769 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 769 ~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.+|.+.++++++.|....|++|+.+|.|++||++-.+++ .+.. ++ ...+|++|+..|.|+||+
T Consensus 2333 -~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 -TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred -eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 789999999999999999999999999999999877665 2222 44 567899999999999995
No 284
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.97 E-value=2.5e-09 Score=130.56 Aligned_cols=190 Identities=15% Similarity=0.305 Sum_probs=155.7
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003177 555 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 633 (842)
Q Consensus 555 ~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t 633 (842)
.++.|-..|.++.-+|...+.+||+.||.|++|....+..+..++ .....|+.+.|+..|+.+..+..||.+.+|.+.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 345566778899989988999999999999999988887776663 234889999999999999999999999999998
Q ss_pred CCceeeEeecCccceEEEEEcCCCCcEEEEEe---CCCcEEEEECCCC---ceeeEEeecCCeeEEEEeCCCCEEEEEEc
Q 003177 634 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNG---SCAGVFKCQSGATQMRFQPRLGRILAAAI 707 (842)
Q Consensus 634 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs---~Dg~I~vwDl~t~---~~i~~~~~~~~i~~v~~sp~g~~l~~~s~ 707 (842)
..+......|.....++.|.. .++++++ .++.+.+||..-. .++. ..+..+++++++.|....|++|+.
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred -CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCC
Confidence 345778888999999999885 3555553 5789999997532 2333 456788999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003177 708 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 760 (842)
Q Consensus 708 dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 760 (842)
+|.|++||++..+.++.+.. ++ ...++++++ .|.|+||++...
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 99999999998877766653 44 566788888 999999999875
No 285
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.97 E-value=2.3e-06 Score=90.62 Aligned_cols=218 Identities=14% Similarity=0.190 Sum_probs=146.6
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEc-CCCCEEEEEeCCCeEEEEEcCCCCceee-Ee
Q 003177 565 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSLR-TF 641 (842)
Q Consensus 565 sv~fSp-dg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fs-pdg~~Latgs~Dg~I~IWDl~t~~~~i~-~~ 641 (842)
+++|.+ ++.++++--..+.|+.|+..++.... +.... ...+++. +++ .|+.+..++ +.++|+.++..... ..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 678998 67777777678999999998876643 22222 6777777 564 555555554 55669887643221 11
Q ss_pred e--c-CccceEEEEEcCCCCcEEEEEeCC--------CcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEE-cCC
Q 003177 642 T--G-HSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IEN 709 (842)
Q Consensus 642 ~--~-h~~~V~sl~fspdg~~llasgs~D--------g~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s-~dg 709 (842)
. . .....+++++.++|. +.++.... |.|..++.. ++.......-...+.++|+|+++.|+++. ..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 1 1 346788999999988 55454432 568888888 66666666566788999999999887655 468
Q ss_pred eEEEEECCC--C-----eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003177 710 YISILDVET--Q-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 781 (842)
Q Consensus 710 ~I~IwDl~t--~-----~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~ 781 (842)
.|..|++.. . +....+....+....++++.+|+++++.. .+.|.++|.. + +.+..+......+++|+|
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEEE
Confidence 899999853 2 11222222233478999999999887766 8899999977 5 566666666568999999
Q ss_pred e-CCCCEEEEEEc
Q 003177 782 H-PTFPSLLVIGC 793 (842)
Q Consensus 782 s-pdg~~L~sgs~ 793 (842)
. ++.+.|++.+.
T Consensus 233 gg~~~~~L~vTta 245 (246)
T PF08450_consen 233 GGPDGKTLYVTTA 245 (246)
T ss_dssp ESTTSSEEEEEEB
T ss_pred ECCCCCEEEEEeC
Confidence 4 67677776653
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.96 E-value=1.7e-06 Score=91.71 Aligned_cols=217 Identities=7% Similarity=0.018 Sum_probs=143.0
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEc-CCCCcEEEEEeCCCcEEEEECCCCceeeE
Q 003177 606 TDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGV 683 (842)
Q Consensus 606 ~~l~fsp-dg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fs-pdg~~llasgs~Dg~I~vwDl~t~~~i~~ 683 (842)
.+++|.+ ++.++++-...+.|+.|+..++.. ..+.... ...+++. ++ ..++ .+.. +.+.++|+.+++....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--~~~~~~~--~~G~~~~~~~-g~l~-v~~~-~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--EVIDLPG--PNGMAFDRPD-GRLY-VADS-GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEESSS--EEEEEEECTT-SEEE-EEET-TCEEEEETTTTEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeE--EEEecCC--CceEEEEccC-CEEE-EEEc-CceEEEecCCCcEEEE
Confidence 3678988 666666666789999999987643 2222222 6777777 55 4444 4443 4566669998876655
Q ss_pred Eee------cCCeeEEEEeCCCCEEEEEEcC--------CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 003177 684 FKC------QSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 748 (842)
Q Consensus 684 ~~~------~~~i~~v~~sp~g~~l~~~s~d--------g~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 748 (842)
... ....+.+++.++|+.+++.... |.|+.++.. ++...... .-.....|+|+|+++.|+.+.
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence 554 1237789999998866665543 568888888 55444433 345678999999999887665
Q ss_pred -CCeEEEEEcCCCCC-c---eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEE
Q 003177 749 -DELVRVWSIGSGSK-G---ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA 822 (842)
Q Consensus 749 -Dg~I~IwDl~s~~~-~---~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~ 822 (842)
.+.|..|++..... . ..+..+....+....+++..+|+..++....+.|.++|.. |+.+ .+......+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 77899999864322 1 1222223323357889999999877776778899999988 6665 34333468999999
Q ss_pred e-CCCCEEEEE
Q 003177 823 S-TVNGMVASA 832 (842)
Q Consensus 823 s-pdg~~Lasg 832 (842)
. ++.+.|+..
T Consensus 233 gg~~~~~L~vT 243 (246)
T PF08450_consen 233 GGPDGKTLYVT 243 (246)
T ss_dssp ESTTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 5 565555443
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=4.5e-08 Score=111.65 Aligned_cols=240 Identities=15% Similarity=0.196 Sum_probs=176.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCC------------CEEEEEeCCCeE
Q 003177 559 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTV 626 (842)
Q Consensus 559 H~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg------------~~Latgs~Dg~I 626 (842)
|...-.++.|+|.| +||.|+. ..|.|.|..+.+.+..+..|...|+.+.|.|.. -+||++...|.|
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 33346788999877 8888876 578999999999999999999999999998731 256777788999
Q ss_pred EEEEcCCCCceeeEeecCccceEEEEEcCC---CCcEEEEEeCCCcEEEEECCCCceeeEEeecCC-eeEEEEeC-CCCE
Q 003177 627 RVWDTENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQP-RLGR 701 (842)
Q Consensus 627 ~IWDl~t~~~~i~~~~~h~~~V~sl~fspd---g~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-i~~v~~sp-~g~~ 701 (842)
.+||...... +..+..|..+|..++|-+. ..+++++-....+|.+|+..+|+....+..... ..|+.+.| +.+.
T Consensus 92 il~d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 92 ILVDFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 9999987553 6677778899999999763 345666766788999999999999988876444 45688888 5566
Q ss_pred EEEEEcCCeEEEEECCC-------CeEEEEEeCCCC------------C-------------EEEEEEcCCCCEEEE-Ee
Q 003177 702 ILAAAIENYISILDVET-------QVCRLKLQGHKN------------Q-------------VHSVCWNTSGEYLAS-VS 748 (842)
Q Consensus 702 l~~~s~dg~I~IwDl~t-------~~~~~~l~~h~~------------~-------------V~sl~~spdg~~Las-gs 748 (842)
+...+..|.+.+.+.-. ++....-..|.+ . ...++|+|.-+.++. .-
T Consensus 171 ~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~ 250 (1062)
T KOG1912|consen 171 FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF 250 (1062)
T ss_pred EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe
Confidence 77777788877776431 233332223322 0 012456776554444 44
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC--CEEEEEEcCCeEEEEECCC
Q 003177 749 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF--PSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 749 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg--~~L~sgs~dg~I~Iwdl~~ 804 (842)
...+.|+|++-. .++.......+.+.-+.+-|++ ..|++.-.+|.+.||-.+.
T Consensus 251 prellv~dle~~---~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 251 PRELLVFDLEYE---CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ccceEEEcchhh---ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 888999999765 6677666666666666776665 5799999999999997654
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.92 E-value=6.9e-07 Score=101.62 Aligned_cols=254 Identities=11% Similarity=0.018 Sum_probs=156.5
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccce---
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--- 648 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V--- 648 (842)
+..|+.++.+|.++.+|.++|+.+............... .+..+++++.++.|..+|..+++. +..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAV-KWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCE-eeeecCCCCccccc
Confidence 456777888999999999999988766543321111122 245677788899999999998875 33332111000
Q ss_pred --EEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCC--------eeEEEEeC--CCCEEEEEEcCCeEEEEEC
Q 003177 649 --MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--------ATQMRFQP--RLGRILAAAIENYISILDV 716 (842)
Q Consensus 649 --~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~--------i~~v~~sp--~g~~l~~~s~dg~I~IwDl 716 (842)
.+.... +. .++.++.+|.+..+|..+|+.+..+..... ...+..+| .++.+++++.+|.+..+|.
T Consensus 197 ~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 197 GESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 111111 22 344567789999999999988776543211 01111122 3567888888999999999
Q ss_pred CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcC
Q 003177 717 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCY 794 (842)
Q Consensus 717 ~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~~spdg~~L~sgs~d 794 (842)
.+++.+...... ....+.. ++..|+.++ ++.|..+|..++ +.+-..... .....+..+ .+.+|++++.+
T Consensus 274 ~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG---~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~ 344 (394)
T PRK11138 274 RSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGG---VELWSQSDLLHRLLTAPVL--YNGYLVVGDSE 344 (394)
T ss_pred CCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCC---cEEEcccccCCCcccCCEE--ECCEEEEEeCC
Confidence 999887665421 1112222 344555555 999999999887 333322211 111222223 24578999999
Q ss_pred CeEEEEECCCCeEEE-EccCCCCee-EEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 795 ETLELWNMTENKTLT-LSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 795 g~I~Iwdl~~~~~~~-~~~h~~~V~-sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|.|+++|..+|+.+. ..-....+. ...+. +..|+.++.||.|+.++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEEEEe
Confidence 999999999999873 322222232 22332 45788889999988764
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.91 E-value=8.5e-07 Score=92.92 Aligned_cols=216 Identities=12% Similarity=0.017 Sum_probs=138.3
Q ss_pred CCcEEEEecCCCeEEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCC
Q 003177 581 DKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 658 (842)
Q Consensus 581 Dg~I~vwd~~t~~~~~~l~~h--~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~ 658 (842)
+|.|..||..+++.+.....- .....+. ..+++.++++++.++.|+.||..+++. +..+.. ...+...... .+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~-~W~~~~-~~~~~~~~~~-~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKV-LWRFDL-PGPISGAPVV-DGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEE-EEEEEC-SSCGGSGEEE-ETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCE-EEEeec-cccccceeee-ccc
Confidence 689999999999998777431 1222221 223567788889999999999988765 333332 1111111111 223
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEE-eecC----CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCC--
Q 003177 659 DLLCSCDNNSEIRYWSINNGSCAGVF-KCQS----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-- 731 (842)
Q Consensus 659 ~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~----~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~-- 731 (842)
.+ +.++.++.|+.+|..+|+.+... .... ..........++.++++..++.|..+|+++|+.+.........
T Consensus 78 ~v-~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 78 RV-YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EE-EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cc-ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 34 45557889999999999999884 3221 1222333334788999999999999999999998888764422
Q ss_pred --------EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 732 --------VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 802 (842)
Q Consensus 732 --------V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl 802 (842)
+.+-....++ .++.++ ++.+..+|+.++ +.+.... ...+.. .....+..|++++.++.|.+||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg---~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG---EKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT---EEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC---CEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence 1222233345 555555 775444499988 4333222 222222 24577788888889999999999
Q ss_pred CCCeEE
Q 003177 803 TENKTL 808 (842)
Q Consensus 803 ~~~~~~ 808 (842)
++++.+
T Consensus 230 ~tG~~~ 235 (238)
T PF13360_consen 230 KTGKVV 235 (238)
T ss_dssp TTTEEE
T ss_pred CCCCEE
Confidence 999876
No 290
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.90 E-value=1.1e-06 Score=108.91 Aligned_cols=236 Identities=11% Similarity=0.171 Sum_probs=160.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEE----EcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 003177 601 HTQWITDVRFSPSLSRLATSSADRTVRVW----DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 676 (842)
Q Consensus 601 h~~~I~~l~fspdg~~Latgs~Dg~I~IW----Dl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~ 676 (842)
..+.|.++.|.++...++.+..+|.|.++ +..+.. +.....-...|.+++|+||.. +++..+.+++|.+.+-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE--IEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce--eEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEEEecc
Confidence 45679999999999999999999999999 555433 344444567899999999977 55555557776664321
Q ss_pred ---------------CCcee--------eEE-------------------------eecCCeeEEEEeCCCCEEEEEEc-
Q 003177 677 ---------------NGSCA--------GVF-------------------------KCQSGATQMRFQPRLGRILAAAI- 707 (842)
Q Consensus 677 ---------------t~~~i--------~~~-------------------------~~~~~i~~v~~sp~g~~l~~~s~- 707 (842)
..+.+ ..| .....-..++|-.||.++++.+.
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 00000 000 01224567889999999998875
Q ss_pred --C---CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003177 708 --E---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHS 778 (842)
Q Consensus 708 --d---g~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~s 778 (842)
. ..|+||+-+ |....+-..-.+--.+++|.|.|++|++.. . ..|.+|.-..-...+....+......|..
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence 2 478999876 554444433344446789999999999887 2 36777775544333443334455678999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEE---EEc-cCCCCeeEEEEeCCCC-EEEEEeCCCcEEEc
Q 003177 779 CVFHPTFPSLLVIGCYETLELWNMTENKTL---TLS-AHDKLVSSLAASTVNG-MVASASHDKCVKIW 841 (842)
Q Consensus 779 v~~spdg~~L~sgs~dg~I~Iwdl~~~~~~---~~~-~h~~~V~sla~spdg~-~Lasgs~DG~V~IW 841 (842)
+.|++++..|++...|. |.+|...+.... .+. .....+..+.|+|... .|...+.+|.+.++
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY 376 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence 99999999888877554 999999988755 222 3334456699999654 46666665666543
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.86 E-value=3.7e-08 Score=105.71 Aligned_cols=164 Identities=16% Similarity=0.207 Sum_probs=113.6
Q ss_pred ccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003177 507 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 586 (842)
Q Consensus 507 l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~v 586 (842)
..+..++++++..++...+|+...... +..+....++..-...|+.+..+......-.++....+.+
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeee
Confidence 455667888887777766765544322 1112222333333334444544433333333444556666
Q ss_pred EecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeC
Q 003177 587 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 666 (842)
Q Consensus 587 wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~ 666 (842)
|....+.+.- +-+|-..+++|+|+||+++|+|+..|..|+|-.+......-..+.||+..|..++..++. .|++++.
T Consensus 137 ~s~~~~~~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sG 213 (390)
T KOG3914|consen 137 LSADSGRCEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSG 213 (390)
T ss_pred ecccccCcch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCC
Confidence 6666555544 448999999999999999999999999999998876554344567899999999998763 5779999
Q ss_pred CCcEEEEECCCCceeeEEee
Q 003177 667 NSEIRYWSINNGSCAGVFKC 686 (842)
Q Consensus 667 Dg~I~vwDl~t~~~i~~~~~ 686 (842)
|++|++||+.+|+++.++..
T Consensus 214 D~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CCcEEEEecccCCcccccch
Confidence 99999999999999877664
No 292
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=1.8e-09 Score=123.82 Aligned_cols=264 Identities=14% Similarity=0.182 Sum_probs=184.5
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eE
Q 003177 549 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TV 626 (842)
Q Consensus 549 ~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I 626 (842)
.|+.+++++.|+...+|++|+-+.+.|++|+..|.|++|++.+|........|...|+.+.-+.||..+++.+.-. -.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 4677888999999999999999999999999999999999999999999999999999999999999888776543 46
Q ss_pred EEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-----cCCeeEEEEeCCCCE
Q 003177 627 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGR 701 (842)
Q Consensus 627 ~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-----~~~i~~v~~sp~g~~ 701 (842)
.+|++.+.....+.|. .-.++.|+.....-+ .|.......+||+.++..+.++-. ...-++..|+|....
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 7999886444444444 345778876533223 344446788999999876655322 223477889998776
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003177 702 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 781 (842)
Q Consensus 702 l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~ 781 (842)
++- || .+||++....++.|..... -..-.|+|.|.-++.- -.|||+++. +.++.... -.-..+.|
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIIN----SEIwD~RTF---~lLh~VP~--Ldqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIIN----SEIWDMRTF---KLLHSVPS--LDQCAVTF 1309 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEee----chhhhhHHH---HHHhcCcc--ccceEEEe
Confidence 653 33 5899998877777654442 2234689999988874 468999987 44443332 12345677
Q ss_pred eCCCCEEEEEEc-----C------------CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEE
Q 003177 782 HPTFPSLLVIGC-----Y------------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA 832 (842)
Q Consensus 782 spdg~~L~sgs~-----d------------g~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasg 832 (842)
...|..+++.-. + ...+-||..+.+.+........|.+++-.+...+++..
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 777765544320 0 13444555555555444555667777777766666554
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.84 E-value=1.2e-08 Score=115.41 Aligned_cols=207 Identities=20% Similarity=0.285 Sum_probs=153.5
Q ss_pred EEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEecCCCe-EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 553 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSpdg-~~Lasgs~Dg~I~vwd~~t~~-~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
-..+.+|+..|+.+.|.+.. ..|++++.|-.|..||+.+.. .+..+..-......|+|+.....+++.+..+.|+|||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 34678999999999999954 479999999999999998643 4455555555677899988666666667788899999
Q ss_pred cCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc--eeeEEeecCCeeEEEEeCCCCEEEEEE--
Q 003177 631 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAA-- 706 (842)
Q Consensus 631 l~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~--~i~~~~~~~~i~~v~~sp~g~~l~~~s-- 706 (842)
++.+..++..+++|...|+.++|.......+.+++.|++|++||..+.. ..+.+....+|..-++.|-|.-.++--
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~ 266 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV 266 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc
Confidence 9999989999999999999999987666677899999999999987543 334444556677777777544333222
Q ss_pred cCCeEEEEE---------CCC-CeEEEEEeCCCCCEEEEEEcCCC----------CEEEEEe-CCeEEEEEcCC
Q 003177 707 IENYISILD---------VET-QVCRLKLQGHKNQVHSVCWNTSG----------EYLASVS-DELVRVWSIGS 759 (842)
Q Consensus 707 ~dg~I~IwD---------l~t-~~~~~~l~~h~~~V~sl~~spdg----------~~Lasgs-Dg~I~IwDl~s 759 (842)
.++.+.+++ ..+ ..+++.|.+|...|...-|-..+ -.|++=+ |.++++|-+.+
T Consensus 267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 122333333 333 36789999999988777664321 2466666 99999998864
No 294
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=1.1e-08 Score=112.22 Aligned_cols=206 Identities=14% Similarity=0.264 Sum_probs=148.1
Q ss_pred EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC------ceeeEeecCccceEEEEEcCCCCcEEEEEeCCC
Q 003177 595 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 668 (842)
Q Consensus 595 ~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 668 (842)
+..+.+|...|..++-..+.+.+++++.|++|++|.++... .+..++..|+.+|.++.|-.+.. .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 35678999999999888888899999999999999987432 24568889999999999997744 45454 89
Q ss_pred cEEEEECCCCceeeEEee---cCCeeEEEEeC--CCCEEEEE-EcCCeEEEEECCCCeEEEEEe-----CCCCCEEEEEE
Q 003177 669 EIRYWSINNGSCAGVFKC---QSGATQMRFQP--RLGRILAA-AIENYISILDVETQVCRLKLQ-----GHKNQVHSVCW 737 (842)
Q Consensus 669 ~I~vwDl~t~~~i~~~~~---~~~i~~v~~sp--~g~~l~~~-s~dg~I~IwDl~t~~~~~~l~-----~h~~~V~sl~~ 737 (842)
.|.+||.--++.+..... ++.+..+...+ +...++++ +.+.+|+++|.+..+....++ +....+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 999999877766553321 23334444333 33344555 567899999999886655554 23456889999
Q ss_pred cCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE-EECCCCeE
Q 003177 738 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL-WNMTENKT 807 (842)
Q Consensus 738 spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~I-wdl~~~~~ 807 (842)
.+.|+.++++- .|+|.+.|.+++ +.+..+...+.....++ .|....|+....|.++.+ |..-++..
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCee
Confidence 99999999876 999999999998 55555544333333332 344556777777888888 87666543
No 295
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1e-08 Score=110.75 Aligned_cols=277 Identities=16% Similarity=0.138 Sum_probs=181.5
Q ss_pred cCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCcEEE
Q 003177 508 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVL 586 (842)
Q Consensus 508 ~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~-Dg~I~v 586 (842)
.....|+.+++.|+.++.|....- ....-+..++.|-+.|.+++.+-+|.++++++. |..+++
T Consensus 17 ~tka~fiiqASlDGh~KFWkKs~i----------------sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv 80 (558)
T KOG0882|consen 17 PTKAKFIIQASLDGHKKFWKKSRI----------------SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV 80 (558)
T ss_pred eehhheEEeeecchhhhhcCCCCc----------------cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE
Confidence 445678999999999999933221 112345667899999999999999999999887 999999
Q ss_pred EecCCCeEEEEec--cCCCCeEEEEEcCC-C-CEEEEE-eCCCeEEEEEcCCCCcee-eEeecCccceEEEEEcCCCCcE
Q 003177 587 WCTESFTVKSTLE--EHTQWITDVRFSPS-L-SRLATS-SADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDL 660 (842)
Q Consensus 587 wd~~t~~~~~~l~--~h~~~I~~l~fspd-g-~~Latg-s~Dg~I~IWDl~t~~~~i-~~~~~h~~~V~sl~fspdg~~l 660 (842)
+|+++...+.-++ .-.+.+.++ .++. . ..|+++ -.++.|.|+|-....+.. ..-.-|..+|.++.+.+.++ .
T Consensus 81 fDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s 158 (558)
T KOG0882|consen 81 FDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-S 158 (558)
T ss_pred EEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-c
Confidence 9998876653332 222222221 2221 1 133333 347899999977655333 33445899999999999987 4
Q ss_pred EEEEeCCCcEEEEECCC------CceeeEEe----------ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003177 661 LCSCDNNSEIRYWSINN------GSCAGVFK----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 724 (842)
Q Consensus 661 lasgs~Dg~I~vwDl~t------~~~i~~~~----------~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~ 724 (842)
+++....|.|..|.... .+....++ ......++.|+|++..+.+.+.|..|++++.++++.+..
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 55888889999999873 22222222 245578999999999999999999999999999988776
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 725 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 725 l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~-~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
+..-... ..+-+... +.+-++.-+.....-+.+..++ ..-+.++|...+++|+.++--| |++.++.
T Consensus 239 iDE~~t~---~~~q~ks~---------y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~ 305 (558)
T KOG0882|consen 239 IDEVLTD---AQYQPKSP---------YGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLD 305 (558)
T ss_pred hhccchh---hhhccccc---------cccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEee
Confidence 6532111 11111111 1111111111111111222222 3346678999999999888776 8899999
Q ss_pred CCeEEEEccCCC
Q 003177 804 ENKTLTLSAHDK 815 (842)
Q Consensus 804 ~~~~~~~~~h~~ 815 (842)
++.++++.+...
T Consensus 306 tn~v~ri~gk~e 317 (558)
T KOG0882|consen 306 TNTVVRILGKDE 317 (558)
T ss_pred cCeEEEEeccch
Confidence 988876555433
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.76 E-value=7.7e-06 Score=87.45 Aligned_cols=244 Identities=14% Similarity=0.129 Sum_probs=161.8
Q ss_pred eEEEEEcC-CCCEEEEEECCCc-EEEEecCCCeEEEEeccCCCCeE--EEEEcCCCCEEEEEeC-----CCeEEEEEcCC
Q 003177 563 VESCHFSP-DGKLLATGGHDKK-AVLWCTESFTVKSTLEEHTQWIT--DVRFSPSLSRLATSSA-----DRTVRVWDTEN 633 (842)
Q Consensus 563 V~sv~fSp-dg~~Lasgs~Dg~-I~vwd~~t~~~~~~l~~h~~~I~--~l~fspdg~~Latgs~-----Dg~I~IWDl~t 633 (842)
...++.+| ++..++.+-.-|+ ..+||..+++....+....+.-. .-+|++||++|++.-. .|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34578888 5667777777665 67899999998877754443322 4689999999998754 47899999995
Q ss_pred CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 003177 634 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 713 (842)
Q Consensus 634 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~I 713 (842)
.-..+..+..|.-.-..+.+.||++.+++.- |-|.- ..++++. .+=....+-.+.+
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN---GGI~T-hpd~GR~--------------------kLNl~tM~psL~~ 142 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVAN---GGIET-HPDSGRA--------------------KLNLDTMQPSLVY 142 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEc---CCCcc-CcccCce--------------------ecChhhcCCceEE
Confidence 5555777887777778899999997666442 22211 0111111 1122233455666
Q ss_pred EECCCCeEEEE--E--eCCCCCEEEEEEcCCCCEEEEEe-CC-------eEEEEEcCCCCCceeEEE----eecCCCceE
Q 003177 714 LDVETQVCRLK--L--QGHKNQVHSVCWNTSGEYLASVS-DE-------LVRVWSIGSGSKGECIHE----LSCTGNKFH 777 (842)
Q Consensus 714 wDl~t~~~~~~--l--~~h~~~V~sl~~spdg~~Lasgs-Dg-------~I~IwDl~s~~~~~~i~~----~~~~~~~I~ 777 (842)
.|..+++.+.. + ..|...|..+++.++|..++..- .+ .|.+++.... ...+.. .......+-
T Consensus 143 ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~g 220 (305)
T PF07433_consen 143 LDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIG 220 (305)
T ss_pred EecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceE
Confidence 77777776655 4 23778899999999999888765 33 3555544331 111111 122357899
Q ss_pred EEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeC
Q 003177 778 SCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 834 (842)
Q Consensus 778 sv~~spdg~~L~sgs~dg-~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~ 834 (842)
+|+++.++..+++++--+ .+.+||..+++++....- ..+..++..+++ ++++.+.
T Consensus 221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 221 SIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCC
Confidence 999999999887777654 999999999998854333 345667666666 5555544
No 297
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2e-06 Score=95.46 Aligned_cols=287 Identities=15% Similarity=0.167 Sum_probs=182.0
Q ss_pred cccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 003177 506 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 585 (842)
Q Consensus 506 ~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~ 585 (842)
.+.+.+.++++-+....+..|. +....-..+|+..+|.....+.++++....-.-..||.|++|+|.-.. ..|.
T Consensus 256 dfSP~EkYLVT~s~~p~~~~~~-----d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 256 DFSPNEKYLVTYSPEPIIVEED-----DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred ecCCccceEEEecCCccccCcc-----cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 3445556666666554444332 222234567888888777777766655555556799999999998776 5799
Q ss_pred EEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcE
Q 003177 586 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 660 (842)
Q Consensus 586 vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~l 660 (842)
||+..+..++..-.-.-..|....|+|.+..||.=+.. ..+.+-.+.+... +++..-|.-.=..+.|-.+|++|
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~-iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE-IRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce-eeeccceeeeccEEEeccCCcEE
Confidence 99988755543222234568889999998888754321 2455555555432 33333333222345566676654
Q ss_pred EEEEeC------CC---cEEEEECCCC-ceeeEEeecCCeeEEEEeCCCCEEEEEEcC---CeEEEEECCC-C---eEEE
Q 003177 661 LCSCDN------NS---EIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVET-Q---VCRL 723 (842)
Q Consensus 661 lasgs~------Dg---~I~vwDl~t~-~~i~~~~~~~~i~~v~~sp~g~~l~~~s~d---g~I~IwDl~t-~---~~~~ 723 (842)
.+-... .| .+-|+.++.. -++........|...+|-|.|+.+++.+.+ .++.+|.+++ . +.+.
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 432221 11 3445555543 244555566789999999999998876653 5788888873 2 2233
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC----
Q 003177 724 KLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---- 795 (842)
Q Consensus 724 ~l~~h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg---- 795 (842)
.+. ....+.+.|+|.|.+++.+. .|.+.++|..-. .+...-.......+.+.|.|.|+|++++++..
T Consensus 489 ~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a---~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~ 563 (698)
T KOG2314|consen 489 ELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA---DLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKV 563 (698)
T ss_pred hhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchh---hhhhccCccccccccceECCCCCEEEEeeehhhhcc
Confidence 332 34567899999999998876 578999998742 22223333345567889999999999988643
Q ss_pred --eEEEEECCC
Q 003177 796 --TLELWNMTE 804 (842)
Q Consensus 796 --~I~Iwdl~~ 804 (842)
.-+||+...
T Consensus 564 d~GYri~tfqG 574 (698)
T KOG2314|consen 564 DNGYRIFTFQG 574 (698)
T ss_pred ccceEEEEeec
Confidence 455666544
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.75 E-value=2.1e-06 Score=97.66 Aligned_cols=255 Identities=8% Similarity=0.052 Sum_probs=153.1
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEeccCCC----------CeE-EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeE
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------WIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~----------~I~-~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~ 640 (842)
+..|++++.++.|..+|.++|+.+-....... .+. .+.. ++..++.++.+|.|+.+|.++++.. ..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~-W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVA-WQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCc-cc
Confidence 55777788889999999999988866532220 000 1111 3557788889999999999987753 33
Q ss_pred eecCccceEE-EEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEE--EEeC--CCCEEEEEEcCCeEEEEE
Q 003177 641 FTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM--RFQP--RLGRILAAAIENYISILD 715 (842)
Q Consensus 641 ~~~h~~~V~s-l~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v--~~sp--~g~~l~~~s~dg~I~IwD 715 (842)
.... ..+.+ ..+. +. .++.+..++.|..+|.++|+.+..+....+...+ ..+| .++.+++++.++.+..+|
T Consensus 146 ~~~~-~~~~ssP~v~--~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVA-GEALSRPVVS--DG-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCC-CceecCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 3222 22221 2222 23 4446677899999999999998887653221100 0111 235678888899999999
Q ss_pred CCCCeEEEEEeCCCC-------CEEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003177 716 VETQVCRLKLQGHKN-------QVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 785 (842)
Q Consensus 716 l~t~~~~~~l~~h~~-------~V~sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg 785 (842)
..+++.+........ ....+..+| .+..+++++ ++.+..+|..+++ .+..... .....+. ..+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~--~~~~~~~--~~~ 294 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ---IVWKREY--GSVNDFA--VDG 294 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---EEEeecC--CCccCcE--EEC
Confidence 999987765431110 011111122 233444444 9999999999883 3333221 1111222 245
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEc-cC-CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 786 PSLLVIGCYETLELWNMTENKTLTLS-AH-DKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 786 ~~L~sgs~dg~I~Iwdl~~~~~~~~~-~h-~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
..|++++.++.|+.+|..+++.+-.. .. .....+..+. +.+|+.++.||.|.+.|
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEEEEEE
Confidence 67889999999999999999876321 11 1112222222 45677778888877653
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.74 E-value=3.2e-06 Score=88.51 Aligned_cols=212 Identities=12% Similarity=0.054 Sum_probs=134.3
Q ss_pred CCCeEEEEEcCCCCceeeEeecC-ccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCC
Q 003177 622 ADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 700 (842)
Q Consensus 622 ~Dg~I~IWDl~t~~~~i~~~~~h-~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~ 700 (842)
.+|+|..||..+++.....-... .....+..+ ++++. +++++.++.|+.||..+|+.+..+.....+.... ...++
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGR-VYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGG 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTE-EEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETT
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCE-EEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccc
Confidence 36889999998876533332211 122222122 23343 4456789999999999999999888755543332 33457
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEE-eCCC---CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003177 701 RILAAAIENYISILDVETQVCRLKL-QGHK---NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 775 (842)
Q Consensus 701 ~l~~~s~dg~I~IwDl~t~~~~~~l-~~h~---~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 775 (842)
.+++++.++.|+.+|.++++.+... .... ..........++..++++. ++.|..+|+.++ +.+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~ 154 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPR 154 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCC
Confidence 7888888999999999999998884 3221 1122223333477777777 999999999998 565555443322
Q ss_pred ----------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 776 ----------FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 776 ----------I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+..-.+..++ .+++++.++.+..+|+.+++.+. ......+..+ ...++..|+.++.|+.|.+||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1222233344 78888888854444999999763 2223333332 346777888888999999886
No 300
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.73 E-value=5.9e-06 Score=92.56 Aligned_cols=259 Identities=14% Similarity=0.118 Sum_probs=155.3
Q ss_pred cCCCCEEEEEE---------CCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceee
Q 003177 569 SPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 639 (842)
Q Consensus 569 Spdg~~Lasgs---------~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~ 639 (842)
|||+++++... ..+.+.|||+++++...... ....+....|+|+|+.|+... ++.|++++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 67888877642 24679999999976654433 367788999999999999885 67899998876533222
Q ss_pred EeecC----------------ccceEEEEEcCCCCcEEEEEeCCCcE---------------------------------
Q 003177 640 TFTGH----------------STTVMSLDFHPSKEDLLCSCDNNSEI--------------------------------- 670 (842)
Q Consensus 640 ~~~~h----------------~~~V~sl~fspdg~~llasgs~Dg~I--------------------------------- 670 (842)
+..+. -+.-..+-|+||++++++.--++..|
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 22220 01234688999999877655444433
Q ss_pred --EEEECCCCceeeEE-e-----ecCCeeEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEEeC-CCCCE---E
Q 003177 671 --RYWSINNGSCAGVF-K-----CQSGATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQG-HKNQV---H 733 (842)
Q Consensus 671 --~vwDl~t~~~i~~~-~-----~~~~i~~v~~sp~g~~l~~~s~d-----g~I~IwDl~t~~~~~~l~~-h~~~V---~ 733 (842)
.|+|+.+++....- . ...-+..+.|.+++..+++.-.+ -.+.++|..++.+...+.. ....| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 33444444332111 0 01126778899988845544432 2567788877644333221 22332 3
Q ss_pred EEEEc-CCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcC-----CeEEEEEC
Q 003177 734 SVCWN-TSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY-----ETLELWNM 802 (842)
Q Consensus 734 sl~~s-pdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~s-v~~spdg~~L~sgs~d-----g~I~Iwdl 802 (842)
.+.|. +++..++..+ +| .|++++...+ ....+......|.. +.+++++..|+..+.. ..|+..++
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 55554 6665555444 77 5666666654 24455555666744 6789998887766654 26777888
Q ss_pred C-CCeEEEEccCCCCeeEEEEeCCCCEEEEEe
Q 003177 803 T-ENKTLTLSAHDKLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 803 ~-~~~~~~~~~h~~~V~sla~spdg~~Lasgs 833 (842)
. .+....+....+.-..+.|||++++++..+
T Consensus 315 ~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 315 DSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 8 777776665555446999999999877544
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.72 E-value=1.8e-06 Score=88.25 Aligned_cols=243 Identities=11% Similarity=0.071 Sum_probs=159.0
Q ss_pred cccccCCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCC-CEEEE
Q 003177 499 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLAT 577 (842)
Q Consensus 499 ~~~~~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg-~~Las 577 (842)
+.......+.....+++.|+..+...+|....... ..+....|...|+-+.=..|. --+..
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~------------------h~~~cd~snn~v~~~~r~cd~~~~~~i 133 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG------------------HLYQCDVSNNDVTLVKRYCDLKFPLNI 133 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCccc------------------ceeeecccccchhhhhhhcccccceee
Confidence 34455566777788999999999999995543311 112223344433332221122 23566
Q ss_pred EECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee-eEe-ecCccceEEEEEcC
Q 003177 578 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTF-TGHSTTVMSLDFHP 655 (842)
Q Consensus 578 gs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i-~~~-~~h~~~V~sl~fsp 655 (842)
++.|.++++.+++.+.....+....-.+.++++++|++++++.+....|..|.++...+.+ .++ ...+..-.+..|+.
T Consensus 134 ~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~ 213 (344)
T KOG4532|consen 134 ASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE 213 (344)
T ss_pred ccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc
Confidence 7778888888877554443332222338899999999999999999999999998655433 322 22334556788887
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceeeEEe------ecCCeeEEEEeCCCCE--EEEEEcCCeEEEEECCCCeEEEEEe-
Q 003177 656 SKEDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLKLQ- 726 (842)
Q Consensus 656 dg~~llasgs~Dg~I~vwDl~t~~~i~~~~------~~~~i~~v~~sp~g~~--l~~~s~dg~I~IwDl~t~~~~~~l~- 726 (842)
. +..+|++..||++.|||++......... +.+.+..+.|++.|.. |+..-.-+.+.+.|+++++....+.
T Consensus 214 ~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 214 N-DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred C-cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 6 4488899999999999998754332221 3566899999986543 4444445899999999885443332
Q ss_pred ------CCCC-CEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003177 727 ------GHKN-QVHSVCWNTSGEYLASVSDELVRVWSIGSG 760 (842)
Q Consensus 727 ------~h~~-~V~sl~~spdg~~LasgsDg~I~IwDl~s~ 760 (842)
.|.. .|..-+|+.++.-+.+.++-.+.-|++.+.
T Consensus 293 ~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~sr 333 (344)
T KOG4532|consen 293 PDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSR 333 (344)
T ss_pred CccccccccccccccccccCCCcccccccchhhheeecccc
Confidence 1222 377788888887777777666677776554
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.69 E-value=2.5e-07 Score=94.04 Aligned_cols=199 Identities=12% Similarity=0.153 Sum_probs=121.9
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 591 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t 591 (842)
..++++..+..+.++. .++.+....|+-..+ ...+.++.-|+++-.+-+.+-.++.++++..||.+.+++.+.
T Consensus 48 ~~lf~~e~~~~~ss~g-----~~r~~~~~~~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~ 120 (319)
T KOG4714|consen 48 YILFTGETSSQIISLG-----KGRGRCISLWERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDK 120 (319)
T ss_pred heeecccchhheeeec-----cceEEEechhhcccC--cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechH
Confidence 3455565555555542 122222233333332 223445556666666666666778899999999999998775
Q ss_pred CeE-EEEeccCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEe
Q 003177 592 FTV-KSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 665 (842)
Q Consensus 592 ~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~-----Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 665 (842)
... ...+..-...-.+.++...++.|.++.. -+..++|+++..+..+.... ....|.+++-+|.-.+++++|+
T Consensus 121 ~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt 199 (319)
T KOG4714|consen 121 DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGT 199 (319)
T ss_pred HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCCcccccEEEEec
Confidence 211 1122111111122233334444444321 23466777764332222222 2234999999999999999999
Q ss_pred CCCcEEEEECCCCceeeEE--eecCCeeEEEEeCC-CCEEEEEEcCCeEEEEECCC
Q 003177 666 NNSEIRYWSINNGSCAGVF--KCQSGATQMRFQPR-LGRILAAAIENYISILDVET 718 (842)
Q Consensus 666 ~Dg~I~vwDl~t~~~i~~~--~~~~~i~~v~~sp~-g~~l~~~s~dg~I~IwDl~t 718 (842)
.||.+-+||.+.......+ .+..++..+.|+|. ...|+++++||.+..||..+
T Consensus 200 ~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 200 DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999999987433222 24678999999994 56799999999999999875
No 303
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.8e-06 Score=92.81 Aligned_cols=251 Identities=14% Similarity=0.136 Sum_probs=149.3
Q ss_pred EEEEecCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEE
Q 003177 584 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 662 (842)
Q Consensus 584 I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~lla 662 (842)
|++.+..+.+....+..|...|.+++|+|..+ ++..++.+.+|+|.|+++.. .+..+..+ ..+++++|.-+..++|+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence 66676666666667778889999999999776 78899999999999999854 46677766 78999999999999999
Q ss_pred EEeCCCcEEEEECCCCceee-EEe---ecCCeeEEEE------eCCCCEEEEEEcCCeEEEEECC----CCeEEEEEeCC
Q 003177 663 SCDNNSEIRYWSINNGSCAG-VFK---CQSGATQMRF------QPRLGRILAAAIENYISILDVE----TQVCRLKLQGH 728 (842)
Q Consensus 663 sgs~Dg~I~vwDl~t~~~i~-~~~---~~~~i~~v~~------sp~g~~l~~~s~dg~I~IwDl~----t~~~~~~l~~h 728 (842)
+|..+|.|.|||++..+-.. .+. ...+|..++. .+.++.+++...+ +..|++. ...++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-C
Confidence 99999999999998654221 111 1123333332 3344545444433 2233332 222222222 2
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CC---e---EEE-EEcCCCCCceeEEEeecC-CCce------EEEEEeCCCCEEEEEE
Q 003177 729 KNQVHSVCWNTSGEYLASVS--DE---L---VRV-WSIGSGSKGECIHELSCT-GNKF------HSCVFHPTFPSLLVIG 792 (842)
Q Consensus 729 ~~~V~sl~~spdg~~Lasgs--Dg---~---I~I-wDl~s~~~~~~i~~~~~~-~~~I------~sv~~spdg~~L~sgs 792 (842)
.+...++.+.+-.+.++... +. . |-. -|..++. .....-..+ +..- ..+.-.++.++|+..+
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~--pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g 407 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF--PVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG 407 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCc--eeeeecccccCCcccccccccceeccccccEEEEec
Confidence 44555556655444444332 11 1 111 1111111 001111111 1111 1122234445555444
Q ss_pred c-CCeEEEEECCCCeEEEEccCCCCeeEEEEeCC--CCEEEEEeCCCcEEEcC
Q 003177 793 C-YETLELWNMTENKTLTLSAHDKLVSSLAASTV--NGMVASASHDKCVKIWK 842 (842)
Q Consensus 793 ~-dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spd--g~~Lasgs~DG~V~IWd 842 (842)
. .+.+.+||..+.+++....-..+|.+++.... +.+|++-. |..|+||+
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred CCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 3 34899999999999866666788888876542 34666654 55677764
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.66 E-value=1.4e-05 Score=83.30 Aligned_cols=227 Identities=17% Similarity=0.197 Sum_probs=132.8
Q ss_pred EEEcCCCCEEEEEECCCcEEEEecCC--CeEEEEec---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeE
Q 003177 566 CHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 566 v~fSpdg~~Lasgs~Dg~I~vwd~~t--~~~~~~l~---~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~ 640 (842)
++.+.||++||+.- |..|.|-..++ ..++.... ...-.=..++|+||+.+||.+...|+|++||+.... +..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce--eEE
Confidence 56788999988764 56777765442 12222222 222335689999999999999999999999998532 222
Q ss_pred eec-------CccceEEEEEcCCC-----CcEEEEEeCCCcEEEEECCC-----CceeeEEee----cCCeeEEEEeCCC
Q 003177 641 FTG-------HSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN-----GSCAGVFKC----QSGATQMRFQPRL 699 (842)
Q Consensus 641 ~~~-------h~~~V~sl~fspdg-----~~llasgs~Dg~I~vwDl~t-----~~~i~~~~~----~~~i~~v~~sp~g 699 (842)
+.. -...|..+.|.+.. ...|++-..+|.++-|-+.. .+....+.. ..+|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 211 23456677776432 22344555677777776532 233334432 5679999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEE--EEe-CC------eEEEEEcCCCCCceeEEEee
Q 003177 700 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA--SVS-DE------LVRVWSIGSGSKGECIHELS 770 (842)
Q Consensus 700 ~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~La--sgs-Dg------~I~IwDl~s~~~~~~i~~~~ 770 (842)
+.|++|+....= ++. -......+++-..-.+..+.. +.. |+ +..+|.+-+. .......
T Consensus 160 ~LLlVgG~~~~~------~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~ 226 (282)
T PF15492_consen 160 RLLLVGGCEQNQ------DGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQG 226 (282)
T ss_pred CEEEEeccCCCC------Ccc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce---eeeeccc
Confidence 998888764320 000 000111122211111111111 111 11 1123332221 1222223
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 771 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 771 ~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
.....|..+.++|||..|++...+|.|.+|++.+-+..
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 35678999999999999999999999999999887655
No 305
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.65 E-value=1.7e-07 Score=97.16 Aligned_cols=234 Identities=18% Similarity=0.288 Sum_probs=148.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce----eeEeecCc------------cceEEEEEcCC-CCcEEEE
Q 003177 601 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGHS------------TTVMSLDFHPS-KEDLLCS 663 (842)
Q Consensus 601 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~----i~~~~~h~------------~~V~sl~fspd-g~~llas 663 (842)
..+.|+++.|...|.||++|...|.|.+|.-+....+ ...+.+|. ..|..|.|..+ +..-+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3467999999999999999999999999976543311 12244443 35778888754 3334446
Q ss_pred EeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEE---------cCCeEEEEECCCCeEEEEEeCCCCCEEE
Q 003177 664 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA---------IENYISILDVETQVCRLKLQGHKNQVHS 734 (842)
Q Consensus 664 gs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s---------~dg~I~IwDl~t~~~~~~l~~h~~~V~s 734 (842)
.+.|.+|++|.+.......+-. ...+.-.-+|.++-+.+.. .|..|..+ .+...-..|...|.+
T Consensus 105 stNdktiKlWKiyeknlk~va~--nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiNS 177 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAE--NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHINS 177 (460)
T ss_pred ecCCceeeeeeeecccchhhhc--cccccccccccCCCcCCHHHhhcccccccceEEEec-----cceeccccceeEeee
Confidence 6779999999997542211111 1111111112211111100 01111111 111112458889999
Q ss_pred EEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC-----CceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE
Q 003177 735 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 735 l~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~-----~~I~sv~~spdg-~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
+.|..|...++++.|=.|.+|++.-....-.+..++.|. ..|++..|+|.. ..+...++.|.|++-|++...+.
T Consensus 178 iS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 178 ISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 999999999999989999999987654334444455543 457888999965 55667788899999999732211
Q ss_pred ---------E--------EccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 809 ---------T--------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 809 ---------~--------~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
. +......|..+.|+++|++|++-+. -+|+|||
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 1 1122356889999999999987654 5899997
No 306
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.8e-07 Score=94.72 Aligned_cols=246 Identities=15% Similarity=0.136 Sum_probs=154.9
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEE
Q 003177 550 FTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVR 627 (842)
Q Consensus 550 ~~~i~~l~gH~~~V~sv~fSpdg~-~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~ 627 (842)
|+....+.+|...|..++|||..+ +|..++.+.+|.|.|+++..++..+..| ..+++++|.-|. .+|+.|...|.|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 334557889999999999999776 7889999999999999999999888878 789999998864 5667777899999
Q ss_pred EEEcCCCCceeeEeec--CccceEEEEEcC------CCCcEEEEEeCCCcEEEEECCC----CceeeEEeecCCeeEEEE
Q 003177 628 VWDTENPDYSLRTFTG--HSTTVMSLDFHP------SKEDLLCSCDNNSEIRYWSINN----GSCAGVFKCQSGATQMRF 695 (842)
Q Consensus 628 IWDl~t~~~~i~~~~~--h~~~V~sl~fsp------dg~~llasgs~Dg~I~vwDl~t----~~~i~~~~~~~~i~~v~~ 695 (842)
|||++..+..+..+.+ ...+|..|+.-+ .+. +++.... .+..|.+.- ..++..+...+...++.+
T Consensus 262 vyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 262 VYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQY 338 (463)
T ss_pred EEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeee
Confidence 9999987655544443 234455544332 223 4433333 244565532 223333334455667777
Q ss_pred eCCCCEEEEEEcCC-------eEE-EEECCCCeEEEEEe-CC-CCCE------EEEEEcCCCCEEEEEe--CCeEEEEEc
Q 003177 696 QPRLGRILAAAIEN-------YIS-ILDVETQVCRLKLQ-GH-KNQV------HSVCWNTSGEYLASVS--DELVRVWSI 757 (842)
Q Consensus 696 sp~g~~l~~~s~dg-------~I~-IwDl~t~~~~~~l~-~h-~~~V------~sl~~spdg~~Lasgs--Dg~I~IwDl 757 (842)
.+..+.+++....+ .|. --|..+|.++...+ .+ .+.- ..+.-.++.++|+..+ .+.+.+||.
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP 418 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence 77667777666531 111 12333444333222 12 1110 1122234566766655 458999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEE-eCCCCEEEEEEcCCeEEEEECC
Q 003177 758 GSGSKGECIHELSCTGNKFHSCVF-HPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 758 ~s~~~~~~i~~~~~~~~~I~sv~~-spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
.+. +.+.++... .+|..++. +-++.-++..-.|..++||..+
T Consensus 419 ~s~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 419 HSF---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred chh---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 988 566666544 66766654 3445545555566678888654
No 307
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.61 E-value=4.5e-07 Score=92.28 Aligned_cols=195 Identities=13% Similarity=0.127 Sum_probs=114.4
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEecCCCeEE------------EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~------------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
|+.+.|+.+ ..|+++..++.+..+....+.+. ..+..|.++-.+-+.+--++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 566666643 35667777766666554433332 22223333322222233466799999999999999
Q ss_pred cCCCCceeeEeecCccceEEEEEcCCCCcEEEEEe-----CCCcEEEEECCCCceee-EEeecCCeeEEEEeCCCCE-EE
Q 003177 631 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGR-IL 703 (842)
Q Consensus 631 l~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs-----~Dg~I~vwDl~t~~~i~-~~~~~~~i~~v~~sp~g~~-l~ 703 (842)
.+........+..-...-.+.++...++ ++.++. .-+..+.|+++..+.+. .......+.+++-+|.-.. ++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred chHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 8752211111111111112222333333 222221 12345556655433221 1222345889999996655 55
Q ss_pred EEEcCCeEEEEECCCCe-EEEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCC
Q 003177 704 AAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGS 759 (842)
Q Consensus 704 ~~s~dg~I~IwDl~t~~-~~~~l~~h~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s 759 (842)
+|+.||.+.+||.+... ++..+..|+.+|..+.|+| ++..|++++ ||.+..||..+
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 66678999999999874 3445678999999999999 567888888 99999999765
No 308
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.59 E-value=1.2e-05 Score=93.26 Aligned_cols=179 Identities=11% Similarity=0.043 Sum_probs=121.0
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEc-------------------------
Q 003177 653 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI------------------------- 707 (842)
Q Consensus 653 fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~------------------------- 707 (842)
+.++|..+.......+.+.++|..+.+....+........+.++++++++++.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 4556665554555567888999998888888887777788889999988887751
Q ss_pred ---------------CCeEEEEECCC----C-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC---
Q 003177 708 ---------------ENYISILDVET----Q-VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK--- 762 (842)
Q Consensus 708 ---------------dg~I~IwDl~t----~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~--- 762 (842)
++.|.++|.++ + ..+..+. -......+.++|||+++++++ +.+|.|+|+.+...
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 24477777776 2 3333333 445678899999999999888 88999999987531
Q ss_pred ------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC----------CeEE-EEccCCCC-----eeEE
Q 003177 763 ------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE----------NKTL-TLSAHDKL-----VSSL 820 (842)
Q Consensus 763 ------~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~----------~~~~-~~~~h~~~-----V~sl 820 (842)
...+..... +......+|.++|....+.--|..|..||+.. ..++ ++.-|-.+ ...=
T Consensus 359 ~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~ 437 (635)
T PRK02888 359 GKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE 437 (635)
T ss_pred ccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence 112233332 34445678999998777777889999999876 2333 23333222 1112
Q ss_pred EEeCCCCEEEEEe
Q 003177 821 AASTVNGMVASAS 833 (842)
Q Consensus 821 a~spdg~~Lasgs 833 (842)
.-.+||++|++..
T Consensus 438 t~~~dgk~l~~~n 450 (635)
T PRK02888 438 TKEADGKWLVSLN 450 (635)
T ss_pred cCCCCCCEEEEcc
Confidence 2367888887764
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.58 E-value=9.6e-06 Score=97.67 Aligned_cols=243 Identities=12% Similarity=0.156 Sum_probs=152.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeE
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~ 640 (842)
+.|.++.|..+..-|+.+..+|.|.+-|..+.... ....-...|.+++|+||+..++..+.++++.+-+-.=.-...+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 57999999999999999999999999988875433 33445678999999999999999998888776543210000001
Q ss_pred e---ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CceeeEEeecCCeeEEEEeCCCCEEEEEEc----C-CeE
Q 003177 641 F---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAI----E-NYI 711 (842)
Q Consensus 641 ~---~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~----d-g~I 711 (842)
+ ....+....+-|-..... | -|+ .|.....+... .+........+.-+.|+|-.||.++++... + ..|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTq-f-rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQ-F-RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred cccccccccccceeccccccee-e-ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 1 001122233334322111 1 111 12111111111 111111123455678999999999888442 3 689
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003177 712 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 787 (842)
Q Consensus 712 ~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~ 787 (842)
+|||-+ +..-..-....+--.+++|-|.|..+++.. |+.|.+|.-..-........+.....++..++|+.++..
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdi 303 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDI 303 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCc
Confidence 999987 332222222233446899999999998854 667999987655444444445555556999999999998
Q ss_pred EEEEE---cCCeEEEEECCCCeEE
Q 003177 788 LLVIG---CYETLELWNMTENKTL 808 (842)
Q Consensus 788 L~sgs---~dg~I~Iwdl~~~~~~ 808 (842)
|++.. ....|++|-+.+....
T Consensus 304 LAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 304 LAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred eeeeecccccceEEEEEecCeEEE
Confidence 88843 3446999999887644
No 310
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.51 E-value=9.9e-06 Score=92.54 Aligned_cols=224 Identities=12% Similarity=0.128 Sum_probs=127.2
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 003177 598 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 677 (842)
Q Consensus 598 l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t 677 (842)
+....-.+..+.++|++++++++ .||...||...... ... .+.-..++|...+. +|+-...+.|.++.--+
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r--~k~----~G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR--NKA----FGSGLSFVWSSRNR--YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTE--EEE----EEE-SEEEE-TSSE--EEEE-TTS-EEEEETTE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCc--ccc----cCceeEEEEecCcc--EEEEECCCeEEEEEcCc
Confidence 33444557899999999999985 57778888743221 111 23456688888543 55666688899974333
Q ss_pred CceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEc
Q 003177 678 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI 757 (842)
Q Consensus 678 ~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl 757 (842)
.+....+..+..+..+-. |..| ....++.|.+||+.+++.+..+... .|..+.|+++|.+++..++..+.|++.
T Consensus 99 ~~~~k~i~~~~~~~~If~---G~LL-~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~ 172 (443)
T PF04053_consen 99 NEVVKSIKLPFSVEKIFG---GNLL-GVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKY 172 (443)
T ss_dssp E-TT-----SS-EEEEE----SSSE-EEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred cccceEEcCCcccceEEc---CcEE-EEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEe
Confidence 333334444433444433 4444 4445569999999999999998743 489999999999999999888888876
Q ss_pred CCC--------CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEE
Q 003177 758 GSG--------SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 829 (842)
Q Consensus 758 ~s~--------~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~L 829 (842)
... .....+..+......|.+.+|..+ .++..+.. .|+. +-+|+...+..-+.++.=+.+.+..+.|
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~l 247 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRL 247 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEE
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEE
Confidence 432 000133333333678889999887 44544444 7776 5667766666667778888888877888
Q ss_pred EEEeCCCcEEEc
Q 003177 830 ASASHDKCVKIW 841 (842)
Q Consensus 830 asgs~DG~V~IW 841 (842)
+....|+.|..+
T Consensus 248 y~~Dr~~~v~~~ 259 (443)
T PF04053_consen 248 YLIDRDGNVISY 259 (443)
T ss_dssp EEE-TT--EEEE
T ss_pred EEEECCCCEEEE
Confidence 888899888654
No 311
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.51 E-value=6.8e-05 Score=78.19 Aligned_cols=188 Identities=14% Similarity=0.130 Sum_probs=111.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEecc-------CCCCeEEEEEcCC------CCEEEEEeCCCeEEE
Q 003177 562 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPS------LSRLATSSADRTVRV 628 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~-------h~~~I~~l~fspd------g~~Latgs~Dg~I~I 628 (842)
.=.-++||||+.+||.+...|+|++||+... .+..+.. -...|..+.|.+. ...|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 3566999999999999999999999998753 3333321 2356777778653 224667778888887
Q ss_pred EEcCCC---C-ceeeEe---ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCE
Q 003177 629 WDTENP---D-YSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 701 (842)
Q Consensus 629 WDl~t~---~-~~i~~~---~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~ 701 (842)
|-+..+ + .....+ ..+...|.++.|+|....+++.|.....-..+. ....++++-.+..+..+
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILSDSPY 193 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEEEcCCCCc
Confidence 776421 1 112222 224678999999999775555554433110100 01122222222222111
Q ss_pred E--EEEEcCC------eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003177 702 I--LAAAIEN------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 760 (842)
Q Consensus 702 l--~~~s~dg------~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 760 (842)
. ++...|+ +..+|.+-+.+...........|..|..||||..|++.. +|.|.+|++.+.
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 1 1111111 112333322222222223567899999999999999999 999999999876
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=3.6e-06 Score=97.35 Aligned_cols=183 Identities=13% Similarity=0.212 Sum_probs=133.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcee
Q 003177 602 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 681 (842)
Q Consensus 602 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i 681 (842)
.+.++|++++ +++|+.|+.+|.|++++....- .+...|+.. .-+|. ++++|+.||+|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc---ccccccccc------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence 3456777775 5789999999999999987431 334445443 44455 7779999999999999999999
Q ss_pred eEEeecCCeeEEEEeCC-----CCEEEEEEcCCeEEEEECCC--CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEE
Q 003177 682 GVFKCQSGATQMRFQPR-----LGRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV 754 (842)
Q Consensus 682 ~~~~~~~~i~~v~~sp~-----g~~l~~~s~dg~I~IwDl~t--~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~I 754 (842)
..+....++.+++++|+ .+.+++|+..| +.++.-+= .+....+....++|.+++| .|.++|-++|-.|+|
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~Gv~v 183 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDGVKV 183 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCCcEE
Confidence 99999999999999997 56788998888 77765431 1222245557789999999 588999999888999
Q ss_pred EEcCCCCCceeEEEeecCCCc------eEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 755 WSIGSGSKGECIHELSCTGNK------FHSCVFHPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 755 wDl~s~~~~~~i~~~~~~~~~------I~sv~~spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
||+.+. ..+..+...... ...+.|.++.+ ++.|...+|+|..++.
T Consensus 184 yd~~~~---~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 184 YDTPTR---QRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGWGDSVKICSIKK 234 (846)
T ss_pred Eecccc---ceeeccCCCCCCCCcccCCCceEecCCCe--EEEecCCeEEEEEEec
Confidence 999887 344433332222 24567777654 4455666788888873
No 313
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.50 E-value=1.1e-06 Score=94.52 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=108.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeeEeecCccceEEEEEcCCCCcEEE--EEeCCCcEEEEECCCCce
Q 003177 605 ITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLC--SCDNNSEIRYWSINNGSC 680 (842)
Q Consensus 605 I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~--~i~~~~~h~~~V~sl~fspdg~~lla--sgs~Dg~I~vwDl~t~~~ 680 (842)
+..+..++++++||++..+....++++..... .......-...-+++.|..+....++ ..++...+.+|....+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 44556677888888888888777777765432 11111112233344555444443332 233445566666666778
Q ss_pred eeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE-eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003177 681 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 758 (842)
Q Consensus 681 i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l-~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~ 758 (842)
...+.+-+.+..++|+||+.+|+++..|..|+|-.......+..+ -||+..|..++.-++-. |++++ |++|++||+.
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDIT 223 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecc
Confidence 878878888999999999999999999999999877665555444 46999999999976655 55555 9999999999
Q ss_pred CCC
Q 003177 759 SGS 761 (842)
Q Consensus 759 s~~ 761 (842)
+++
T Consensus 224 sgk 226 (390)
T KOG3914|consen 224 SGK 226 (390)
T ss_pred cCC
Confidence 984
No 314
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.48 E-value=0.00035 Score=80.02 Aligned_cols=243 Identities=14% Similarity=0.096 Sum_probs=141.1
Q ss_pred eEEEEEcCCCCEEEEE-ECCC----cEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----------eE
Q 003177 563 VESCHFSPDGKLLATG-GHDK----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV 626 (842)
Q Consensus 563 V~sv~fSpdg~~Lasg-s~Dg----~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg-----------~I 626 (842)
+..+++||||++||.+ +..| .|+++|+++++.+...-.. .....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4468899999998865 3333 5999999999876432111 1123499999988877665433 37
Q ss_pred EEEEcCCCCce-eeEeecCccc--eEEEEEcCCCCcEEEEEeCCC---cEEEEECCCC-----ceeeEEeecCCeeEEEE
Q 003177 627 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG-----SCAGVFKCQSGATQMRF 695 (842)
Q Consensus 627 ~IWDl~t~~~~-i~~~~~h~~~--V~sl~fspdg~~llasgs~Dg---~I~vwDl~t~-----~~i~~~~~~~~i~~v~~ 695 (842)
++|++.++... ...+...... ...+..+++++++++...... .|++.|+..+ ...........+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888776543 2334333332 568889999998887665443 5888888875 33333333334443333
Q ss_pred eCCCCEEEEEEc----CCeEEEEECCCCe---EEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCce
Q 003177 696 QPRLGRILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGE 764 (842)
Q Consensus 696 sp~g~~l~~~s~----dg~I~IwDl~t~~---~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~ 764 (842)
+. +..++..+. .+.|...++.... ....+..+...+.-..+...+.+|+... ++ .|+++++..+ .
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~---~ 360 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG---K 360 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T---E
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC---c
Confidence 33 444444433 3578888888764 2335555665433333444555565554 55 7999999822 2
Q ss_pred eEEEee-cCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeEEEE
Q 003177 765 CIHELS-CTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTL 810 (842)
Q Consensus 765 ~i~~~~-~~~~~I~sv~~spdg~~L~sgs~d----g~I~Iwdl~~~~~~~~ 810 (842)
....+. ...+.|..+...++++.+...-.. .+|+.||+.+++...+
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 333332 234445666666666654443322 3899999999887643
No 315
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.48 E-value=5e-05 Score=88.82 Aligned_cols=258 Identities=10% Similarity=0.075 Sum_probs=151.2
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEeccCCC------CeE--EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeec
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 643 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~------~I~--~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~ 643 (842)
+..+++++.++.|+.+|..+++.+-.+..... .+. .+... ++..++.++.++.|+.+|.++++.. ..+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~-W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQV-WKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEe-eeecC
Confidence 44666777889999999999988866643322 010 11111 2267888889999999999988753 33222
Q ss_pred Cccc-----e-EEEEEcCCCCcEEEEEe---------CCCcEEEEECCCCceeeEEeecCC-------------------
Q 003177 644 HSTT-----V-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKCQSG------------------- 689 (842)
Q Consensus 644 h~~~-----V-~sl~fspdg~~llasgs---------~Dg~I~vwDl~t~~~i~~~~~~~~------------------- 689 (842)
.... + .+..+.. . +++.++ .++.|..+|..+|+.+..+.....
T Consensus 139 ~~~~~~~~~i~ssP~v~~--~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK--K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEEC--C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 1110 1 1122221 2 333333 368899999999999888765211
Q ss_pred --e-eEEEEeCCCCEEEEEEcCC------------------eEEEEECCCCeEEEEEeCCCCCE------EEEEEc----
Q 003177 690 --A-TQMRFQPRLGRILAAAIEN------------------YISILDVETQVCRLKLQGHKNQV------HSVCWN---- 738 (842)
Q Consensus 690 --i-~~v~~sp~g~~l~~~s~dg------------------~I~IwDl~t~~~~~~l~~h~~~V------~sl~~s---- 738 (842)
+ ....+.+.++.+++++.++ .|.-+|.++++.+..+..-...+ ....+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0 1244555667888887665 79999999999988875311111 001111
Q ss_pred CCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE------------------EcCCe
Q 003177 739 TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI------------------GCYET 796 (842)
Q Consensus 739 pdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sg------------------s~dg~ 796 (842)
-++. ++++++ +|.+..+|..++ +.+...... ...++.+| ..++++ ..++.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG---~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTG---KLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCC---cEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 2343 456666 999999999998 444433211 11123333 233332 23578
Q ss_pred EEEEECCCCeEEEEccCC---------CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 797 LELWNMTENKTLTLSAHD---------KLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 797 I~Iwdl~~~~~~~~~~h~---------~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|.-+|+.+++.+-..... .+...-.....+.+|++++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 999999999887222211 1111111112456788888899887664
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=3.3e-07 Score=96.45 Aligned_cols=160 Identities=13% Similarity=0.184 Sum_probs=122.6
Q ss_pred EEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-----eEEEEEeCCCCCEEEEE
Q 003177 662 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVC 736 (842)
Q Consensus 662 asgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~-----~~~~~l~~h~~~V~sl~ 736 (842)
++.+.+-.|-+.|++++..- .|...+.|.++.|...++.++.|+..|.|..+|++.. .+...+. |.+.|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeeccccc-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence 45566778889999887543 3335678999999998999999999999999999864 4555555 999999998
Q ss_pred EcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEE--EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc
Q 003177 737 WNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS--CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA 812 (842)
Q Consensus 737 ~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~s--v~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~ 812 (842)
.-. ++.+|.+.+ +|+|++||++..+..+.+..+.+|.+.-.- +.+++....|++++.|-..+||.++.+.++....
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 766 777777777 999999999987444458888888654433 4456777889999999999999999999884332
Q ss_pred -----CCCCeeEEEEe
Q 003177 813 -----HDKLVSSLAAS 823 (842)
Q Consensus 813 -----h~~~V~sla~s 823 (842)
.+..+.+++|.
T Consensus 386 f~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 386 FPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCccccccccceehh
Confidence 23345666664
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.48 E-value=4.9e-06 Score=97.17 Aligned_cols=175 Identities=14% Similarity=0.232 Sum_probs=131.5
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEEeecC-CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc
Q 003177 660 LLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 738 (842)
Q Consensus 660 llasgs~Dg~I~vwDl~t~~~i~~~~~~~-~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~s 738 (842)
.++-|+-...+..+|+++.+..+...... ++.-++. +++.+++|...|+|.+-|.++.+.++++..|.+.|..+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD-- 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD-- 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--
Confidence 45567777788899999988888777644 4444443 457899999999999999999999999999999987665
Q ss_pred CCCCEEEEEe----------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEE---CCC
Q 003177 739 TSGEYLASVS----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWN---MTE 804 (842)
Q Consensus 739 pdg~~Lasgs----------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg-~~L~sgs~dg~I~Iwd---l~~ 804 (842)
-.|+.|++|+ |..|+|||++.-.. +..+..+.++ .-+.|+|.- ..+++++..|...+.| +.+
T Consensus 225 v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra---l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA---LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ccCCeEEEeecccccccccccchhhhhhhhhhhc---cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 4688888875 33689999998733 3222222222 456778865 4688889999999998 333
Q ss_pred CeE--EEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 805 NKT--LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 805 ~~~--~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
... ..+......+..+++++++..++.|..+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 321 23334455699999999999999999999999993
No 318
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.46 E-value=0.00033 Score=77.24 Aligned_cols=268 Identities=14% Similarity=0.098 Sum_probs=141.0
Q ss_pred EEcCCCCEEEEEEC-CC--cEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeec
Q 003177 567 HFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 643 (842)
Q Consensus 567 ~fSpdg~~Lasgs~-Dg--~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~ 643 (842)
+|.+||+.|+.++. || .+++.|+.+++...--.+.........++++.+.|+.......|+..|+.+.+. ...+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEEC
Confidence 67788976655544 54 567778889877654433223333567778888887776777899999998654 344554
Q ss_pred CccceEEEEEc--CCCCcEEEEEe----------------------CCCcEEEEECCCCceeeEEeecCCeeEEEEeCCC
Q 003177 644 HSTTVMSLDFH--PSKEDLLCSCD----------------------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL 699 (842)
Q Consensus 644 h~~~V~sl~fs--pdg~~llasgs----------------------~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g 699 (842)
....+-...|. .++. .++.+- -.+.|...|+.+|+....+....-+..+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 55555445554 3333 332221 1235777899999988888888889999999988
Q ss_pred CEEEEEEcCC-----eEEEEECCC-CeEEEEEeCCC--CCEEEEEEcCCCCEEEEEe------CCeEEEEEcCCCCCcee
Q 003177 700 GRILAAAIEN-----YISILDVET-QVCRLKLQGHK--NQVHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGEC 765 (842)
Q Consensus 700 ~~l~~~s~dg-----~I~IwDl~t-~~~~~~l~~h~--~~V~sl~~spdg~~Lasgs------Dg~I~IwDl~s~~~~~~ 765 (842)
..+++-|.+| .-+||-+++ +.....+..+. ..+..=-|.+||..|.--+ +..|.-+|+.++.. ..
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~~ 278 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-RR 278 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-EE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-eE
Confidence 8877776644 125554442 23333333332 2445557999998776533 22677788887643 12
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCC----------------eEEEEECCCCeEEEEccCCC---------C--ee
Q 003177 766 IHELSCTGNKFHSCVFHPTFPSLLVIGCYE----------------TLELWNMTENKTLTLSAHDK---------L--VS 818 (842)
Q Consensus 766 i~~~~~~~~~I~sv~~spdg~~L~sgs~dg----------------~I~Iwdl~~~~~~~~~~h~~---------~--V~ 818 (842)
+... .....+..++||.+++-=++|. .|+++++..+....+..|.. . =.
T Consensus 279 ~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP 354 (386)
T PF14583_consen 279 LMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP 354 (386)
T ss_dssp EEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred EEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence 2221 2344566778888555434432 56778888877654444421 1 24
Q ss_pred EEEEeCCCCEEE-EEeCCCcEEEc
Q 003177 819 SLAASTVNGMVA-SASHDKCVKIW 841 (842)
Q Consensus 819 sla~spdg~~La-sgs~DG~V~IW 841 (842)
.+.|+||+++|+ ++...|...||
T Consensus 355 hp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp --EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCccCCCCCEEEEECCCCCCccEE
Confidence 579999999665 55567776665
No 319
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=8.6e-08 Score=110.39 Aligned_cols=200 Identities=17% Similarity=0.268 Sum_probs=149.8
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCC-cE
Q 003177 592 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EI 670 (842)
Q Consensus 592 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg-~I 670 (842)
.+..++|..|+...+|++|+-+.++|++|+..|.|++|++.++.. ...+.+|...|+.+.-+.+|..+|.+++... -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchH
Confidence 345667888999999999999999999999999999999998764 6678889999999999999998886666555 67
Q ss_pred EEEECCC-CceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE-eC---CCCCEEEEEEcCCCCEEE
Q 003177 671 RYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QG---HKNQVHSVCWNTSGEYLA 745 (842)
Q Consensus 671 ~vwDl~t-~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l-~~---h~~~V~sl~~spdg~~La 745 (842)
.+|++.+ +...+.| .+-.++.|+.....-+.|+......+||+.++.+..++ .+ ....-.+..|+|+..+|+
T Consensus 1170 aLW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HHhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 7899864 3333343 44567888876566667777788999999998766552 22 222346788999998876
Q ss_pred EEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 746 SVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 746 sgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
- || .+||++.. ..++.|.... ....-.|+|.|..+++-+ .|||+++-+.+
T Consensus 1247 n--dG--vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1247 N--DG--VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred e--Cc--eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 4 44 48999887 5555554333 222347999998887754 58999886654
No 320
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=0.00023 Score=80.63 Aligned_cols=250 Identities=11% Similarity=0.125 Sum_probs=174.9
Q ss_pred EEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeeEe-ecCccceEEEEEcCCCCcEE
Q 003177 584 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLL 661 (842)
Q Consensus 584 I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~t~~~~i~~~-~~h~~~V~sl~fspdg~~ll 661 (842)
+.+++..+......+..+. ....+...+++..++.... ...+.+.+... .. .... ......-..+++++.+..++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~-~~~~~~~g~~~p~~i~v~~~~~~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NT-VTQSLSVGGVYPAGVAVNPAGNKVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ce-eeeeccCCCccccceeeCCCCCeEE
Confidence 6666666655555554333 5667888888855544432 23455555442 21 2211 11114456788999998888
Q ss_pred EEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEc---CCeEEEEECCCCeEEEEEeCCCCCEEEEEEc
Q 003177 662 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWN 738 (842)
Q Consensus 662 asgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~---dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~s 738 (842)
+....+..|.+.|..+.++............++++++++.++++.. ++.+.+.|..+.+.......-..+ ..++++
T Consensus 90 v~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~ 168 (381)
T COG3391 90 VTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD 168 (381)
T ss_pred EecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC
Confidence 8888889999999998888888887778889999999988888776 689999999999888775543344 899999
Q ss_pred CCCCEEEEEe--CCeEEEEEcCCCCCceeEE-E---eecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEE
Q 003177 739 TSGEYLASVS--DELVRVWSIGSGSKGECIH-E---LSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLT 809 (842)
Q Consensus 739 pdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~-~---~~~~~~~I~sv~~spdg~~L~sgs~dg---~I~Iwdl~~~~~~~ 809 (842)
|+|..++.+. ++.|.++|.... .... . ..........+.+++++.++++..... .+.+.|..++....
T Consensus 169 p~g~~vyv~~~~~~~v~vi~~~~~---~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 169 PDGNKVYVTNSDDNTVSVIDTSGN---SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred CCCCeEEEEecCCCeEEEEeCCCc---ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 9999887776 889999997665 2221 1 112234456789999999887776654 89999999988875
Q ss_pred Ec-cCCC-CeeEEEEeCCCCEEEEEeCC-CcEEE
Q 003177 810 LS-AHDK-LVSSLAASTVNGMVASASHD-KCVKI 840 (842)
Q Consensus 810 ~~-~h~~-~V~sla~spdg~~Lasgs~D-G~V~I 840 (842)
.. .-.. ....+.++|+|..+.+.... +.|.+
T Consensus 246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred eccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 42 2222 56778899999988777433 44443
No 321
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=9.5e-07 Score=95.86 Aligned_cols=207 Identities=15% Similarity=0.154 Sum_probs=149.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--CCceeeEeecCccceEEEEEcCCCCcEEEEEeC-CCcEEEEECC
Q 003177 600 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSIN 676 (842)
Q Consensus 600 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t--~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~ 676 (842)
-|.+.|+.+.-. -.+++++++.||.++.|.-.. +...+..+..|...|.+++.+-++- ++++.+. |..++++|++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce-eEeeccCcccceeEEEee
Confidence 377777776554 467999999999999997653 2233456677888999999998854 7778666 9999999999
Q ss_pred CCceeeEEeecCCeeEEEEeCCCC----EEEEEE-cCCeEEEEECCCCe--EEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 003177 677 NGSCAGVFKCQSGATQMRFQPRLG----RILAAA-IENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS- 748 (842)
Q Consensus 677 t~~~i~~~~~~~~i~~v~~sp~g~----~l~~~s-~dg~I~IwDl~t~~--~~~~l~~h~~~V~sl~~spdg~~Lasgs- 748 (842)
+-..+..++...-...+.|....+ .+++.. .++.|.|+|-.... ....-.-|..+|.++.+.+-+..+++..
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 877665555433333333332222 333333 46899999987653 2333344999999999999999999888
Q ss_pred CCeEEEEEcCC-CCC-----------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 749 DELVRVWSIGS-GSK-----------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 749 Dg~I~IwDl~s-~~~-----------~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
.|.|.-|.... ... ...+..+........++.|+|++..+.+.+.|..|++++.++++++
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 89999999873 100 0112223334567789999999999999999999999999998755
No 322
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=3.8e-06 Score=98.00 Aligned_cols=181 Identities=17% Similarity=0.272 Sum_probs=142.2
Q ss_pred CCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEE
Q 003177 571 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 650 (842)
Q Consensus 571 dg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~s 650 (842)
++..++.|+.-..+..+|+.+.+..+........|+-++. +++++++|...|+|.+-|.++.+ .++++..|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc-eeeeeeccccceee
Confidence 4556778888888999999998887776555555666655 67899999999999999999865 58999999999999
Q ss_pred EEEcCCCCcEEEEEeC---------CCcEEEEECCCCceeeEEeecCCeeEEEEeCCC-CEEEEEEcCCeEEEEE---CC
Q 003177 651 LDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILD---VE 717 (842)
Q Consensus 651 l~fspdg~~llasgs~---------Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g-~~l~~~s~dg~I~IwD---l~ 717 (842)
++.. |+ +|++|+. |..|+|||++..+.+.-+..+....-+.|+|.- ..+++++..|.+.+.| +.
T Consensus 223 fDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 FDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eecc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 8887 33 6667764 557899999998888877776777778888853 4577788889999999 33
Q ss_pred CC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003177 718 TQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 757 (842)
Q Consensus 718 t~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl 757 (842)
+. ..+..+......+..+++++++..++.+. +|.|.+|.-
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 33 22333333455699999999999999999 999999983
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=7.2e-06 Score=94.97 Aligned_cols=183 Identities=16% Similarity=0.197 Sum_probs=129.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceee
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 639 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~ 639 (842)
.+.|+|++++ +++|+.|+++|.|++++.... . .+...|... ..+|.+++|||.||+|.|..+.+... ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 3558888887 679999999999999986543 3 333345544 56899999999999999999887664 23
Q ss_pred EeecCccceEEEEEcCC----CCcEEEEEeCCCcEEEEECC---CCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEE
Q 003177 640 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 712 (842)
Q Consensus 640 ~~~~h~~~V~sl~fspd----g~~llasgs~Dg~I~vwDl~---t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~ 712 (842)
.+ ....++.+|+++|+ ....+++|+..| +.++.-+ ....+..-...+.|.++.|..+ +++-..|-.|+
T Consensus 108 ~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWANDDGVK 182 (846)
T ss_pred eE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEecCCCcE
Confidence 23 34578999999998 233566888777 7666532 1222322334678999999754 66777777899
Q ss_pred EEECCCCeEEEEEeCCCCCE------EEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003177 713 ILDVETQVCRLKLQGHKNQV------HSVCWNTSGEYLASVSDELVRVWSIGS 759 (842)
Q Consensus 713 IwDl~t~~~~~~l~~h~~~V------~sl~~spdg~~LasgsDg~I~IwDl~s 759 (842)
|||+.+...+..+......+ ..+.|.++. .|+.|-..+|+|..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCCeEEEEEEec
Confidence 99999988777665433322 357776554 46667777899988873
No 324
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.39 E-value=3.5e-07 Score=61.50 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHhc
Q 003177 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36 (842)
Q Consensus 10 ~~L~~yiydyl~k~~~~~~A~~~~~e~ 36 (842)
+.||.+|||||+++|+.+||++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 479999999999999999999999985
No 325
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.39 E-value=0.00024 Score=77.09 Aligned_cols=256 Identities=9% Similarity=0.090 Sum_probs=158.1
Q ss_pred CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCCceeeEeecC--c----
Q 003177 582 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH--S---- 645 (842)
Q Consensus 582 g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~----------Dg~I~IWDl~t~~~~i~~~~~h--~---- 645 (842)
+.|+|+|.++++.+..+.. +..-.+..+||++.+++++. .-.|.+||..+-.......... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998877753 23344678999999987643 3469999998754221111111 1
Q ss_pred cceEEEEEcCCCCcEEEEE-eCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECC-CCeEEE
Q 003177 646 TTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRL 723 (842)
Q Consensus 646 ~~V~sl~fspdg~~llasg-s~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~-t~~~~~ 723 (842)
.....+.++.+++++++.- +---.|.|.|+..++.+..+...+...-.-+. ...|.+.|.||.+..+.+. .|+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecC--CCceEEEecCCceEEEEECCCCCEeE
Confidence 1223457778877666432 23457889999999888888765433322222 2568899999999988887 444432
Q ss_pred EE----eCCCCCE-EEEEEcCCCC-EEEEEeCCeEEEEEcCCCCCceeEEEeecC----------CCceEEEEEeCCCCE
Q 003177 724 KL----QGHKNQV-HSVCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPS 787 (842)
Q Consensus 724 ~l----~~h~~~V-~sl~~spdg~-~LasgsDg~I~IwDl~s~~~~~~i~~~~~~----------~~~I~sv~~spdg~~ 787 (842)
+. .....++ ..-++...+. +++..-+|.|+-.|+..... .....+... .+...-+++++....
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~-~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA-KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE-EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc-cccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 21 1122222 2334555444 44444499999999877532 233333211 122345788887777
Q ss_pred EEEEEcCC----------eEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEE-eCCCcEEEcC
Q 003177 788 LLVIGCYE----------TLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASA-SHDKCVKIWK 842 (842)
Q Consensus 788 L~sgs~dg----------~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~-~Lasg-s~DG~V~IWd 842 (842)
|++.-..+ .|.+||+.+++.+....-+..+.+|.++.+.+ +|++. ..++.|.|||
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 77643221 68899999999985555456788999998876 66554 4578999986
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=4.9e-05 Score=88.84 Aligned_cols=205 Identities=15% Similarity=0.252 Sum_probs=139.3
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCC-----
Q 003177 609 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNG----- 678 (842)
Q Consensus 609 ~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg-----~I~vwDl~t~----- 678 (842)
+|++.+..++.|+.+|.|.+++-. -..+..+..+...|...-|.-++..+|++.+.|+ .|+|||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 467788899999999988777643 2334666667666444445555555666666554 5999999643
Q ss_pred -cee---eEEee-----cCCeeEEEEeCCCCEEEEEEcCCeEEEEECC----CCeEEEEEeCCCCCEEEEEEcCCCCE-E
Q 003177 679 -SCA---GVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVE----TQVCRLKLQGHKNQVHSVCWNTSGEY-L 744 (842)
Q Consensus 679 -~~i---~~~~~-----~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~----t~~~~~~l~~h~~~V~sl~~spdg~~-L 744 (842)
.|+ +.+.. ..++.+++++.+-..+++|..+|.|..+.-+ .+..........++|+.+++..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 344 22321 3568899999999999999999999998532 12212222234679999999998887 5
Q ss_pred EEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-EEEc-cCCCCee
Q 003177 745 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-LTLS-AHDKLVS 818 (842)
Q Consensus 745 asgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~-~~~~-~h~~~V~ 818 (842)
+++....|.+|.+.... .....+..++..+.|..+++....+++++. ..|++|+...... ..+. +|...+.
T Consensus 188 Fv~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EEEecceeEEEEecCCC--cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEE
Confidence 55567889999998432 345557778888999999887764555544 4699999876543 3555 5555443
No 327
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.37 E-value=0.00033 Score=81.97 Aligned_cols=245 Identities=13% Similarity=0.087 Sum_probs=140.5
Q ss_pred CEEEEEECCCcEEEEecCCCeEEEEeccCCCC-----eE-EEEEcCCCCEEEEEe---------CCCeEEEEEcCCCCce
Q 003177 573 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----IT-DVRFSPSLSRLATSS---------ADRTVRVWDTENPDYS 637 (842)
Q Consensus 573 ~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~-----I~-~l~fspdg~~Latgs---------~Dg~I~IWDl~t~~~~ 637 (842)
..++.++.++.|+.+|.++++.+-.+...... |. ...+. +..++.++ .++.|..+|..+++..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 57778889999999999999998776543221 11 11222 24455553 3678999999987753
Q ss_pred eeEeecCcc-------------------ce-EEEEEcCCCCcEEEEEeCCC------------------cEEEEECCCCc
Q 003177 638 LRTFTGHST-------------------TV-MSLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGS 679 (842)
Q Consensus 638 i~~~~~h~~-------------------~V-~sl~fspdg~~llasgs~Dg------------------~I~vwDl~t~~ 679 (842)
.+....... .| ...++.+.+. +++.++.++ .|.-+|+++|+
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 332221110 01 1233444444 444555444 79999999999
Q ss_pred eeeEEeecCC-e------eEEEEe----CCCC---EEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEE
Q 003177 680 CAGVFKCQSG-A------TQMRFQ----PRLG---RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 745 (842)
Q Consensus 680 ~i~~~~~~~~-i------~~v~~s----p~g~---~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~La 745 (842)
....+..... . ....+. -++. .+++++.+|.++.+|.++++.+...... ...+..+| +..++
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv 343 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYL 343 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEE
Confidence 9988764211 1 111111 1222 5777888999999999999988775421 11223333 22222
Q ss_pred EE------------------eCCeEEEEEcCCCCCceeEEEeecCC--------CceEEEEEeCCCCEEEEEEcCCeEEE
Q 003177 746 SV------------------SDELVRVWSIGSGSKGECIHELSCTG--------NKFHSCVFHPTFPSLLVIGCYETLEL 799 (842)
Q Consensus 746 sg------------------sDg~I~IwDl~s~~~~~~i~~~~~~~--------~~I~sv~~spdg~~L~sgs~dg~I~I 799 (842)
.. .+|.|..+|+.++ +.+-...... .+...-.....+..|++++.||.|+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG---~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a 420 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG---KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA 420 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCC---cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence 11 1567888888887 3333333220 11111111224567899999999999
Q ss_pred EECCCCeEEEEccCCCCeeE--EEEeCCCC
Q 003177 800 WNMTENKTLTLSAHDKLVSS--LAASTVNG 827 (842)
Q Consensus 800 wdl~~~~~~~~~~h~~~V~s--la~spdg~ 827 (842)
+|.++|+.+......+.+.+ +.+..+++
T Consensus 421 ld~~tG~~lW~~~~~~~~~a~P~~~~~~g~ 450 (488)
T cd00216 421 FDATTGKELWKFRTPSGIQATPMTYEVNGK 450 (488)
T ss_pred EECCCCceeeEEECCCCceEcCEEEEeCCE
Confidence 99999998833333333322 22344554
No 328
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.36 E-value=0.00029 Score=72.23 Aligned_cols=143 Identities=12% Similarity=0.035 Sum_probs=100.2
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceE-E
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-S 650 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~-s 650 (842)
..+++.|++.+.+...|..+|+.+..-. -...|.+-+.- -|++++.|+..|.+++.+..++.. +..+.... .|. .
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~-~w~f~~~~-~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ-IWNFVILE-TVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh-eeeeeehh-hhccc
Confidence 4578889999999999999988774432 22334433332 467899999999999999999865 33333222 222 2
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCee-EEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003177 651 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENYISILDVETQ 719 (842)
Q Consensus 651 l~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~-~v~~sp~g~~l~~~s~dg~I~IwDl~t~ 719 (842)
....+++. +++.++.|++.+..|.++..++...+..+.+. +-++.+....++++...|.+.-...+..
T Consensus 99 a~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 99 AQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred eEEcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 23345544 88899999999999999999999988866653 4566665567777777777666555544
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.33 E-value=6.2e-05 Score=86.45 Aligned_cols=272 Identities=12% Similarity=0.121 Sum_probs=152.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce
Q 003177 559 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 637 (842)
Q Consensus 559 H~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~ 637 (842)
|...|.--+++..+++|+.|+.-|.|++|+-..+.... ...+..+.+..+..+++..++|.|+..|.|.|+-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 33445555666778999999999999999976654432 22334556677788888888999999999999988753321
Q ss_pred eeE-----eecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-----ceeeEEeecCCeeEEEEeCCCCEEEEEEc
Q 003177 638 LRT-----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAI 707 (842)
Q Consensus 638 i~~-----~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-----~~i~~~~~~~~i~~v~~sp~g~~l~~~s~ 707 (842)
-.. -..|...|++++|++++.. +++|+..|.|.+..+.+. .....+...+.|..+.+.. .++++++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k-~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl 188 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMK-LYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTL 188 (726)
T ss_pred cceeeccccccCCceEEEEEecccccE-EeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhh
Confidence 111 1237789999999999875 559999999999888762 1122233345565555543 34444443
Q ss_pred CCeEEEEECCCCeEEEEEeC-CCC-CEEEEEEcCC----CCEEEEEeCCeEEEEEcCCCCCceeEEE--ee---------
Q 003177 708 ENYISILDVETQVCRLKLQG-HKN-QVHSVCWNTS----GEYLASVSDELVRVWSIGSGSKGECIHE--LS--------- 770 (842)
Q Consensus 708 dg~I~IwDl~t~~~~~~l~~-h~~-~V~sl~~spd----g~~LasgsDg~I~IwDl~s~~~~~~i~~--~~--------- 770 (842)
-.. .+++++.++....=+. .++ .-...||-|. ..-.+.++--..|+|...-.. ..+.+ ++
T Consensus 189 ~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G--~V~~Thqfk~ala~~p~p 265 (726)
T KOG3621|consen 189 TRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAG--EVIKTHQFKDALARPPAP 265 (726)
T ss_pred hhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecce--eEEEeeehhhhhccCCCC
Confidence 322 2344443221110000 111 1234455443 223333342235667654321 11111 10
Q ss_pred -----c-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEE
Q 003177 771 -----C-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA 832 (842)
Q Consensus 771 -----~-------------~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasg 832 (842)
. +.-....+.+-. +.++++-+.-| |+|+|..+...+........|-+++.+ ++-|+.-
T Consensus 266 ~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~-~~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~--~neiFvL 341 (726)
T KOG3621|consen 266 EIPIRSLESPNQRSLPSGTQHLSLSKSSTLH-SDRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHC--GNEIFVL 341 (726)
T ss_pred cccCCCcCCccccCCCCCccccccceeEEee-cceEEEeecce-EEEEEeccceEEEeecCCCceeEEeec--CceEEEE
Confidence 0 000111111111 22455555555 999999888887666556667777654 4444444
Q ss_pred eCCCcEEE
Q 003177 833 SHDKCVKI 840 (842)
Q Consensus 833 s~DG~V~I 840 (842)
..||.+++
T Consensus 342 ~~d~~l~~ 349 (726)
T KOG3621|consen 342 NLDRGLKV 349 (726)
T ss_pred ecCCceeE
Confidence 55664443
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=9.6e-06 Score=93.64 Aligned_cols=263 Identities=14% Similarity=0.115 Sum_probs=150.9
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-CceeeEe
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-DYSLRTF 641 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~-~~~i~~~ 641 (842)
+++++|+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|..++|+..-|.|.+|.++-- ......+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 567999999888999999999999998887777777889999999999999999999999999999988732 2111222
Q ss_pred ecCc--c--ceEEEEEcCCCCcE-----EEEEeCCCcEE-EEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeE
Q 003177 642 TGHS--T--TVMSLDFHPSKEDL-----LCSCDNNSEIR-YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI 711 (842)
Q Consensus 642 ~~h~--~--~V~sl~fspdg~~l-----lasgs~Dg~I~-vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I 711 (842)
..|. . ...|..+++++..+ +++.+++..+- .++.+.....+.... . -.|+|..+++++.+|+|
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~k-s------gv~~g~~F~~~~~~GtV 214 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEK-S------GVPKGTEFLFAGKSGTV 214 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccc-c------CCCCCcEEEEEcCCceE
Confidence 2232 2 23445555654322 12233333332 333332111111111 1 24677888999999999
Q ss_pred EEEECCCC-eEEEEEe--------CCCCCEEEEEEcCCCCEEEEEeCC------eEEEEEcCCCCC-c--------eeEE
Q 003177 712 SILDVETQ-VCRLKLQ--------GHKNQVHSVCWNTSGEYLASVSDE------LVRVWSIGSGSK-G--------ECIH 767 (842)
Q Consensus 712 ~IwDl~t~-~~~~~l~--------~h~~~V~sl~~spdg~~LasgsDg------~I~IwDl~s~~~-~--------~~i~ 767 (842)
+..|-... ..+.... +....|.++.-.-...++..-..| .+++-- +.+.. + ..+.
T Consensus 215 yyvdq~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sg-k~GgrqGgiA~sEssGvLr 293 (1416)
T KOG3617|consen 215 YYVDQNGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSG-KLGGRQGGIACSESSGVLR 293 (1416)
T ss_pred EEEcCCCcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhcc-ccCCccCcccccccccccc
Confidence 98885533 2222211 111222222111111111111111 011100 00000 0 0000
Q ss_pred ---E-eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC-CCC---e----EEE---EccCCCCeeEEEEeCCCCEEEEE
Q 003177 768 ---E-LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM-TEN---K----TLT---LSAHDKLVSSLAASTVNGMVASA 832 (842)
Q Consensus 768 ---~-~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl-~~~---~----~~~---~~~h~~~V~sla~spdg~~Lasg 832 (842)
. -...+..+.++++...+..|+.|...|.+.+|-- .++ . ... .....+.|+.+.|.|-...++.-
T Consensus 294 ~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn 373 (1416)
T KOG3617|consen 294 KSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVN 373 (1416)
T ss_pred CCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhh
Confidence 0 0113467899999999999999999999999953 321 1 112 22345789999998865544443
Q ss_pred e
Q 003177 833 S 833 (842)
Q Consensus 833 s 833 (842)
+
T Consensus 374 ~ 374 (1416)
T KOG3617|consen 374 T 374 (1416)
T ss_pred h
Confidence 3
No 331
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.32 E-value=5e-05 Score=86.51 Aligned_cols=204 Identities=15% Similarity=0.117 Sum_probs=131.4
Q ss_pred EEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---C-CeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCc
Q 003177 584 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---D-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 659 (842)
Q Consensus 584 I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---D-g~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~ 659 (842)
+.+-|.+ +.....+..-...+..-+|+|++..++..+. . ..++++|++++..... ....+.-....|+|||+.
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--~~~~g~~~~P~fspDG~~ 251 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--LNFNGNNGAPAFSPDGSK 251 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--eccCCccCCccCCCCCCE
Confidence 3344433 4445555555667888899999888765532 2 4689999988664222 123344456789999999
Q ss_pred EEEEEeCCCc--EEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEEEEEeCCCCCEEE
Q 003177 660 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHS 734 (842)
Q Consensus 660 llasgs~Dg~--I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~d-g--~I~IwDl~t~~~~~~l~~h~~~V~s 734 (842)
++++...||. |+++|+..+...+.....+.-..-.|+|+|++++..+.. | .|.++|.+.+.... +......-..
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~ 330 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSN 330 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcC
Confidence 9999888885 666677766644422233334467899999999887764 3 57788888765432 2222222237
Q ss_pred EEEcCCCCEEEEEe--CCe--EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003177 735 VCWNTSGEYLASVS--DEL--VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 795 (842)
Q Consensus 735 l~~spdg~~Lasgs--Dg~--I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg 795 (842)
-.|+|||++|+..+ +|. |.+.|+.++.. +..+ ........-.|.+++..|+..+..+
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGK---IRIL-TSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCc---EEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence 88999999999887 554 77777776632 2222 2233344557888888777665544
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.28 E-value=0.00096 Score=76.03 Aligned_cols=90 Identities=10% Similarity=0.072 Sum_probs=70.7
Q ss_pred eEEEEEcCCCCCceeEEE-eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEE
Q 003177 751 LVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 829 (842)
Q Consensus 751 ~I~IwDl~s~~~~~~i~~-~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~L 829 (842)
...+|++...+. .++.. -......+.+++++|+...++.|+.||.|.+||...+..... .+.-.++.++|+|+|.+|
T Consensus 237 d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 237 DSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEEeecCce-eEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEE
Confidence 356677655422 33322 224577899999999999999999999999999887754433 455678999999999999
Q ss_pred EEEeCCCcEEEcC
Q 003177 830 ASASHDKCVKIWK 842 (842)
Q Consensus 830 asgs~DG~V~IWd 842 (842)
++|+.-|.|.+||
T Consensus 315 ~V~s~qGelQ~FD 327 (545)
T PF11768_consen 315 VVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCceEEEEE
Confidence 9999999999997
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00027 Score=82.87 Aligned_cols=195 Identities=12% Similarity=0.146 Sum_probs=136.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCC-eEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCC-
Q 003177 562 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADR-----TVRVWDTENP- 634 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~-I~~l~fspdg~~Latgs~Dg-----~I~IWDl~t~- 634 (842)
.|+| |++.+..+|.|+.+|.|.+++ ...+.+..+..+... |..+....+..+|++.+.|+ .|+|||++.-
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4544 567788999999999999987 344555777777777 55554444457888877765 5899998743
Q ss_pred ----Ccee---eEee----cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECC--CC---ceeeEEeecCCeeEEEEeCC
Q 003177 635 ----DYSL---RTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NG---SCAGVFKCQSGATQMRFQPR 698 (842)
Q Consensus 635 ----~~~i---~~~~----~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~--t~---~~i~~~~~~~~i~~v~~sp~ 698 (842)
..++ +.+. ....++.+++.+.+ -..+|+|-.+|.|..+.-+ .. +.........+|+.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 1122 2221 12467888999887 4467788899999988532 11 12222334678999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeE-EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003177 699 LGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 760 (842)
Q Consensus 699 g~~l~~~s~dg~I~IwDl~t~~~-~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~ 760 (842)
+..++.+.....|.+|.+....+ ...+..|...+.|..+++...-++++++..|.+||....
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGR 245 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCc
Confidence 88866666668889998885443 344667888899999987666577777888999998754
No 334
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.27 E-value=0.00023 Score=76.28 Aligned_cols=193 Identities=13% Similarity=0.128 Sum_probs=136.3
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC-cEEEEECCCCceeeEEeecCC---eeEEEEeCCCCEEEEEEc-----CCeEEEEECC
Q 003177 647 TVMSLDFHPSKEDLLCSCDNNS-EIRYWSINNGSCAGVFKCQSG---ATQMRFQPRLGRILAAAI-----ENYISILDVE 717 (842)
Q Consensus 647 ~V~sl~fspdg~~llasgs~Dg-~I~vwDl~t~~~i~~~~~~~~---i~~v~~sp~g~~l~~~s~-----dg~I~IwDl~ 717 (842)
....++.+|.....++.+-.-| ...+||..+++....+..... .-..+|+++|++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 3456888897777777777666 477899999998887765433 236789999999998765 4789999999
Q ss_pred -CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-------------------eEEEEEcCCCCCceeEEE--e--ecCC
Q 003177 718 -TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-------------------LVRVWSIGSGSKGECIHE--L--SCTG 773 (842)
Q Consensus 718 -t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg-------------------~I~IwDl~s~~~~~~i~~--~--~~~~ 773 (842)
+...+.++..|.-.-..+.+.|||+.|+++..| .+.+.|..++ +.+.. + ..|.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---ALLEQVELPPDLHQ 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---ceeeeeecCccccc
Confidence 557888888887778889999999887776422 3444555565 33333 3 3366
Q ss_pred CceEEEEEeCCCCEEEEEEcCC-------eEEEEECCCC-eEEE-----EccCCCCeeEEEEeCCCCEEEEEe-CCCcEE
Q 003177 774 NKFHSCVFHPTFPSLLVIGCYE-------TLELWNMTEN-KTLT-----LSAHDKLVSSLAASTVNGMVASAS-HDKCVK 839 (842)
Q Consensus 774 ~~I~sv~~spdg~~L~sgs~dg-------~I~Iwdl~~~-~~~~-----~~~h~~~V~sla~spdg~~Lasgs-~DG~V~ 839 (842)
..|..+++.++|..++..-..+ -|.+++.... ..+. ...-.+.|-+|+++.++.++++.| ..|++.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 7899999999997555554433 3555554332 1111 123457799999999998775554 677889
Q ss_pred EcC
Q 003177 840 IWK 842 (842)
Q Consensus 840 IWd 842 (842)
+||
T Consensus 243 ~~d 245 (305)
T PF07433_consen 243 VWD 245 (305)
T ss_pred EEE
Confidence 995
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.25 E-value=0.00014 Score=87.88 Aligned_cols=231 Identities=15% Similarity=0.214 Sum_probs=137.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce
Q 003177 601 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 680 (842)
Q Consensus 601 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~ 680 (842)
..+.|.++.|..+..-|+.+..+|.|.+-|..+.. +.....-...|.+++|+||.. +++..+.+.+|.+-+ .+..+
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT-~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEE-LLALITGRQTLLFMT-KDFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEe-ccccc
Confidence 44689999999999999999999999999888754 333444567899999999977 454555556665433 22222
Q ss_pred eeEEee------cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-----C
Q 003177 681 AGVFKC------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-----D 749 (842)
Q Consensus 681 i~~~~~------~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-----D 749 (842)
+..... .+....+-|-.....| - +..|.....+....+.......-.+.-++|+|--||.|+++.. +
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqf-r-gs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQF-R-GSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred hhccccccccccccccceecccccceee-e-cchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 222111 1112222222211100 0 0011111111111100000001122335799999999999843 4
Q ss_pred -CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCeE---E-EEccCCCCeeEEE
Q 003177 750 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENKT---L-TLSAHDKLVSSLA 821 (842)
Q Consensus 750 -g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~---dg~I~Iwdl~~~~~---~-~~~~h~~~V~sla 821 (842)
..|+|||.. + ..-..-....+.-.+++|-|.|..+++... ++.|.+|.-+.-+. . .+......|..++
T Consensus 221 ~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 221 TRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred ceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheee
Confidence 689999976 3 122222233455578899999998888754 44799998654332 2 3334445599999
Q ss_pred EeCCCCEEEE---EeCCCcEEEc
Q 003177 822 ASTVNGMVAS---ASHDKCVKIW 841 (842)
Q Consensus 822 ~spdg~~Las---gs~DG~V~IW 841 (842)
|+.++.+||+ +.....|++|
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred ecCCCCceeeeecccccceEEEE
Confidence 9999999887 4444559998
No 336
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.23 E-value=4e-06 Score=61.58 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=35.9
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003177 551 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 588 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd 588 (842)
+.+.++.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45788999999999999999999999999999999997
No 337
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.21 E-value=0.00014 Score=82.24 Aligned_cols=260 Identities=13% Similarity=0.080 Sum_probs=138.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--------
Q 003177 562 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-------- 633 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t-------- 633 (842)
.|+++.|.++..-|++|...|.|.||.....+... ......-....|.+- ...++.-.|-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 48999999999999999999999999765432221 000011111111110 00111122333321
Q ss_pred CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec---------CCeeEEEEeC-----CC
Q 003177 634 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---------SGATQMRFQP-----RL 699 (842)
Q Consensus 634 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~---------~~i~~v~~sp-----~g 699 (842)
+-.+...+....++|++++.+.-| +++.|..+|.+.|.|++....+..-... ..++++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 112334445557899999998654 8889999999999999988777664332 2467777763 22
Q ss_pred ---CEEEEEEcCCeEEEEECC--C-CeE----EEEEeCCCCCEEEEE-EcCC---------------------CCEEEEE
Q 003177 700 ---GRILAAAIENYISILDVE--T-QVC----RLKLQGHKNQVHSVC-WNTS---------------------GEYLASV 747 (842)
Q Consensus 700 ---~~l~~~s~dg~I~IwDl~--t-~~~----~~~l~~h~~~V~sl~-~spd---------------------g~~Lasg 747 (842)
-.+++|+..|.+.+|.+. . +.. ......+.++|..|. ++.+ .-+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 357888999999999764 1 211 112224667776665 3221 1267777
Q ss_pred eCCeEEEEEcCCCCCceeEEEeecCCCceEEEEE-----eCCCCEEEEEEcCCeEEEEECCCCeEEE-Ecc----CCCCe
Q 003177 748 SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF-----HPTFPSLLVIGCYETLELWNMTENKTLT-LSA----HDKLV 817 (842)
Q Consensus 748 sDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~-----spdg~~L~sgs~dg~I~Iwdl~~~~~~~-~~~----h~~~V 817 (842)
++..++|+...+. +..+...........+++ ...+..|++...+|.|++|.+..-+.+. ..- ....+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 8999999999876 444444322223333444 2356778888999999999999987772 222 12235
Q ss_pred eEEEEeCCCCEEEEEeC
Q 003177 818 SSLAASTVNGMVASASH 834 (842)
Q Consensus 818 ~sla~spdg~~Lasgs~ 834 (842)
...+++++|..++-.+.
T Consensus 310 ~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT-EE-TTS-EEEE-SS
T ss_pred cccEECCCCCEEEEeCc
Confidence 56677888887766554
No 338
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.20 E-value=4.6e-06 Score=61.29 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=37.0
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 592 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 592 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
++++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 339
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=5.5e-06 Score=87.48 Aligned_cols=156 Identities=14% Similarity=0.219 Sum_probs=116.3
Q ss_pred EEEcCC--CCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----Cceee
Q 003177 566 CHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSLR 639 (842)
Q Consensus 566 v~fSpd--g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~----~~~i~ 639 (842)
|+|+-+ |-. ++.+.+-.|-+-|++++-.. .|. .++.|.++.|.-.+++++.|+..|.|.++|++.. ..+..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 456532 333 44556678889998886433 343 5677999999988999999999999999999865 33344
Q ss_pred EeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce---eeEEeecCCeeE-----EEEeCCCCEEEEEEcCCeE
Q 003177 640 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKCQSGATQ-----MRFQPRLGRILAAAIENYI 711 (842)
Q Consensus 640 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~---i~~~~~~~~i~~-----v~~sp~g~~l~~~s~dg~I 711 (842)
.+ -|...|+++..-......|.+.+.+|+|++||++.-++ +..+. +.|+. +.+.+..+.+++++.|-..
T Consensus 294 rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 294 RL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred EE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeEE
Confidence 33 48899999887763344566778899999999998777 55555 33333 3456678889999999999
Q ss_pred EEEECCCCeEEEEEeC
Q 003177 712 SILDVETQVCRLKLQG 727 (842)
Q Consensus 712 ~IwDl~t~~~~~~l~~ 727 (842)
+||.++.+..+.++.-
T Consensus 371 RiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPF 386 (425)
T ss_pred EEEecccCceeeccCC
Confidence 9999999988877663
No 340
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.18 E-value=7.8e-05 Score=84.95 Aligned_cols=189 Identities=12% Similarity=0.197 Sum_probs=127.0
Q ss_pred eeEeecCccceEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEc-CC--eE
Q 003177 638 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YI 711 (842)
Q Consensus 638 i~~~~~h~~~V~sl~fspdg~~llasgs~D---g~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~-dg--~I 711 (842)
...+......+..-+|+|++..+.+..-.. ..+.++|+++++.............-.|+|+|++++.+.. || .|
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 444444556677889999988776654333 3599999999988888877777888899999999876665 44 57
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003177 712 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 787 (842)
Q Consensus 712 ~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~ 787 (842)
+++|+.++.... +....+.-+.-.|+|||++|+..+ .| .|.+++...... ..+......-..-.|+|||++
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCCCCE
Confidence 888888776333 443344444778999999999888 34 577777766532 233333333337789999999
Q ss_pred EEEEEcC-C--eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEE
Q 003177 788 LLVIGCY-E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 831 (842)
Q Consensus 788 L~sgs~d-g--~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Las 831 (842)
|+..+.. | .|.++|+.++..+....+.......+|.++++.|+.
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEE
Confidence 9988854 3 477788776663433333333444455555554443
No 341
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.15 E-value=0.00024 Score=72.80 Aligned_cols=151 Identities=12% Similarity=-0.018 Sum_probs=119.3
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 003177 651 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 730 (842)
Q Consensus 651 l~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~ 730 (842)
+...++.+.+++.|+..+.+...|..+|+.+........+.+-+.- -+++++.|+..|.+++.+.++|.....+.....
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 3445566778889999999999999999988887777777665555 467899999999999999999987777764433
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003177 731 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 805 (842)
Q Consensus 731 ~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~ 805 (842)
--......+++.++..++ |++.+..|.++. .++...+..++...+-++.+....|+++...|.|.-...+.+
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 223445678999999999 999999999887 788888888888888888885566777777777666666655
No 342
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=3.1e-05 Score=89.59 Aligned_cols=261 Identities=10% Similarity=0.078 Sum_probs=150.4
Q ss_pred EEEEEcCCCCEEEEEEC----CCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceee
Q 003177 564 ESCHFSPDGKLLATGGH----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 639 (842)
Q Consensus 564 ~sv~fSpdg~~Lasgs~----Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~ 639 (842)
+-..|+|...++|+++. .|.|.||- ++|++-+... ..-.++++||+|..-.|+.|-.-|.+.+|...+.+. ..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCcee-ee
Confidence 34679999999988764 57888884 5665443332 122356799999988899999999999999887543 44
Q ss_pred EeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEE---e--ecCCe--eEEEEeCCCC------EEEEEE
Q 003177 640 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---K--CQSGA--TQMRFQPRLG------RILAAA 706 (842)
Q Consensus 640 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~---~--~~~~i--~~v~~sp~g~------~l~~~s 706 (842)
....|..+|..+.|+++|. .+.++..-|.|.+|....-..+... . ....+ .|...++++. ..++++
T Consensus 96 v~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg 174 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG 174 (1416)
T ss_pred eccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence 5567999999999999988 5559999999999987632222211 1 12333 3444455522 233444
Q ss_pred cCCeEE-EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003177 707 IENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 784 (842)
Q Consensus 707 ~dg~I~-IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spd 784 (842)
.++.+- .++.+......... |.+ .|+|..++.+. +|+|+-.|-.. .+....+... . ..+-|.+.
T Consensus 175 De~alD~~fnwk~~~a~rs~~-ksg-------v~~g~~F~~~~~~GtVyyvdq~g----~~~~V~k~dS-~-vQmLf~~~ 240 (1416)
T KOG3617|consen 175 DESALDEPFNWKESLAERSDE-KSG-------VPKGTEFLFAGKSGTVYYVDQNG----RQRTVHKLDS-E-VQMLFMGY 240 (1416)
T ss_pred chhhhcccccCccchhhcccc-ccC-------CCCCcEEEEEcCCceEEEEcCCC----cEEEEEEccc-h-HHHHHhcc
Confidence 444333 34333211111111 111 25666555555 88888777433 2222222111 1 11122222
Q ss_pred CCEEEEEEcCCeEEEEEC-CCCe---------------------------EE----E-EccCCCCeeEEEEeCCCCEEEE
Q 003177 785 FPSLLVIGCYETLELWNM-TENK---------------------------TL----T-LSAHDKLVSSLAASTVNGMVAS 831 (842)
Q Consensus 785 g~~L~sgs~dg~I~Iwdl-~~~~---------------------------~~----~-~~~h~~~V~sla~spdg~~Las 831 (842)
...|++...+-++.++-+ .+|. ++ . -......++|++++..+..|+.
T Consensus 241 ~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~a 320 (1416)
T KOG3617|consen 241 CEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWA 320 (1416)
T ss_pred cceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEe
Confidence 222222222222222211 1110 00 0 0123456999999999999999
Q ss_pred EeCCCcEEEcC
Q 003177 832 ASHDKCVKIWK 842 (842)
Q Consensus 832 gs~DG~V~IWd 842 (842)
|...|.|.+|.
T Consensus 321 gt~~gnv~~w~ 331 (1416)
T KOG3617|consen 321 GTKEGNVTIWL 331 (1416)
T ss_pred cccCCcEEEee
Confidence 99999999994
No 343
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.00071 Score=76.60 Aligned_cols=220 Identities=13% Similarity=0.108 Sum_probs=154.1
Q ss_pred eEEEEEcCCCCE-EEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCcee
Q 003177 563 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL 638 (842)
Q Consensus 563 V~sv~fSpdg~~-Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~t~~~~i 638 (842)
-.++++++++.. +++...++.|.+.|..+.+....+.-.. ....++++++++.++++.. ++++.+.|..+.....
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 346788888884 4445556899999988877776654333 6778999999988877766 6888888888766533
Q ss_pred eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceee-----EEeecCCeeEEEEeCCCCEEEEEEcC---Ce
Q 003177 639 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAAIE---NY 710 (842)
Q Consensus 639 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~-----~~~~~~~i~~v~~sp~g~~l~~~s~d---g~ 710 (842)
. ...-..+ ..+++.|++..++++-..++.|.++|........ ..........+.+.+++.++++.... +.
T Consensus 155 ~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 T-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred E-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 3 3322233 8999999999888777789999999987666553 23334556788999999987776664 59
Q ss_pred EEEEECCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003177 711 ISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 785 (842)
Q Consensus 711 I~IwDl~t~~~~~~l~~h~~-~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg 785 (842)
+.+.|..++........-.. ....+.++|+|.++.+.. .+.+.+.|..+......+.........+..+++.+..
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 99999998876665221122 456789999999998886 5799999988763222222222223345556665544
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.14 E-value=0.00022 Score=82.91 Aligned_cols=179 Identities=13% Similarity=0.097 Sum_probs=115.4
Q ss_pred EcCCCCEEEE-EECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-------------------------
Q 003177 568 FSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------------------------- 621 (842)
Q Consensus 568 fSpdg~~Las-gs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs------------------------- 621 (842)
+++||+.+.. .-..+.+.+.|.++.+....+..-. ....+.++++++++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 3445544322 2223556666777666655553322 345566777777766664
Q ss_pred ---------------CCCeEEEEEcCC----CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce--
Q 003177 622 ---------------ADRTVRVWDTEN----PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-- 680 (842)
Q Consensus 622 ---------------~Dg~I~IWDl~t----~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-- 680 (842)
.++.|.+.|..+ +.. +..+..-......++++|||+++++++..+.+|.|+|+.+.+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~-v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSA-LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcc-eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 134577777765 222 3333334456788999999999999999999999999988552
Q ss_pred ----------eeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC----------CeEEEEEeCCCCCEEEE-----
Q 003177 681 ----------AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET----------QVCRLKLQGHKNQVHSV----- 735 (842)
Q Consensus 681 ----------i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t----------~~~~~~l~~h~~~V~sl----- 735 (842)
+.......+....+|.++|..+.+...|..|..||+.+ ...+..+.-|-.+..-.
T Consensus 358 ~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~ 437 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE 437 (635)
T ss_pred hccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence 44444455677889999998888888899999999876 23344444343322211
Q ss_pred EEcCCCCEEEEEe
Q 003177 736 CWNTSGEYLASVS 748 (842)
Q Consensus 736 ~~spdg~~Lasgs 748 (842)
.-.+||++|++..
T Consensus 438 t~~~dgk~l~~~n 450 (635)
T PRK02888 438 TKEADGKWLVSLN 450 (635)
T ss_pred cCCCCCCEEEEcc
Confidence 2367888888765
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.13 E-value=0.0018 Score=68.45 Aligned_cols=200 Identities=13% Similarity=0.179 Sum_probs=116.5
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEecCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 553 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSpdg~-~Lasgs~Dg~I~vwd~~t~~~~~~l~~h-~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
...+.+-...|..++|+|+.+ ++++....+.|..++. +|+.++.+.-. .+....|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 456677777799999999755 6666777788888886 47777776433 35688999998887777776799999999
Q ss_pred cCCCCce--e---eEe-----ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC---CceeeEEe---------ecC
Q 003177 631 TENPDYS--L---RTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFK---------CQS 688 (842)
Q Consensus 631 l~t~~~~--i---~~~-----~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t---~~~i~~~~---------~~~ 688 (842)
+...... . ..+ ..+...+-.++|++.++.++++. +..-..+|.+.. ...+.... ...
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceec
Confidence 8432211 1 111 12445689999999988788654 444455555543 22211111 123
Q ss_pred CeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCC---------CCEEEEEEcCCCCEEEEEeCCeEEEE
Q 003177 689 GATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVW 755 (842)
Q Consensus 689 ~i~~v~~sp~g~~l~~~s~-dg~I~IwDl~t~~~~~~l~~h~---------~~V~sl~~spdg~~LasgsDg~I~Iw 755 (842)
.+..+.++|..+.+++-+. ...|.++| .+|+.+..+.-.. ...-.|+|+++|++++++--+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 5788999998887777665 56788889 5566555443222 24679999999987777666666655
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.12 E-value=0.002 Score=69.25 Aligned_cols=225 Identities=14% Similarity=0.142 Sum_probs=131.7
Q ss_pred CCCCEEEEEECCCcEEEEecC-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeE--------
Q 003177 570 PDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-------- 640 (842)
Q Consensus 570 pdg~~Lasgs~Dg~I~vwd~~-t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~-------- 640 (842)
..++.|+.|+.+| |+++++. ..+..... +...|..+...++-+.|++-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3577899999988 9999983 33333333 233399999999877777664 599999998753321110
Q ss_pred -----eecCccceEEEE--EcCCCCcEEEEEeCCCcEEEEECCCC-----ceeeEEeecCCeeEEEEeCCCCEEEEEEcC
Q 003177 641 -----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIE 708 (842)
Q Consensus 641 -----~~~h~~~V~sl~--fspdg~~llasgs~Dg~I~vwDl~t~-----~~i~~~~~~~~i~~v~~sp~g~~l~~~s~d 708 (842)
.......+..++ -...+...++.+. ...|.+|..... +..+.+.....+..++|. ++.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-C
Confidence 111223444444 1233444444443 558888877542 566777788999999999 35566665 4
Q ss_pred CeEEEEECCCCeEEEEEeCC------------CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCce
Q 003177 709 NYISILDVETQVCRLKLQGH------------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 776 (842)
Q Consensus 709 g~I~IwDl~t~~~~~~l~~h------------~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I 776 (842)
+...++|+.++.....+... ..++..+.. +++++|++ .|..-.+.|.... ... ...+.= ...+
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~~G~-~~r-~~~i~W-~~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNKNGE-PSR-KSTIQW-SSAP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcCCCC-cCc-ccEEEc-CCch
Confidence 55888899876544333211 122333333 34566654 3444444444332 111 111111 2244
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003177 777 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL 810 (842)
Q Consensus 777 ~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~ 810 (842)
..+++. .++|++.+. +.|.||++.+++++..
T Consensus 232 ~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 232 QSVAYS--SPYLIAFSS-NSIEVRSLETGELVQT 262 (275)
T ss_pred hEEEEE--CCEEEEECC-CEEEEEECcCCcEEEE
Confidence 555553 346777666 5599999999988743
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.11 E-value=0.00041 Score=79.39 Aligned_cols=221 Identities=12% Similarity=0.147 Sum_probs=120.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE-EcCCCCc
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENPDY 636 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW-Dl~t~~~ 636 (842)
...-....+.++|+|+++++ +.||...||.....+.... +.-...+|...+ .+|+-...++|.|+ +++...
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~- 101 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV- 101 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T-
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcccc-
Confidence 34445788999999999988 4578888888555544332 334567888844 57777678889996 443222
Q ss_pred eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 637 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 716 (842)
Q Consensus 637 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl 716 (842)
...+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.+..+.... |..+.|++++.+++..+.+ .++|++.
T Consensus 102 -~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 102 -VKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp -T------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred -ceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 112221 122344433 55 444444 4589999999999999998653 8999999999988888754 5666554
Q ss_pred CCC-----------eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003177 717 ETQ-----------VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 785 (842)
Q Consensus 717 ~t~-----------~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg 785 (842)
+.. .....+......|.+.+|..+ -+|++... .|+. +..+ ....+..-..++.-+.+.+..
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY--l~~G----e~~~i~~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKY--LVNG----ETGIIAHLDKPLYLLGYLPKE 244 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEE--EETT----EEEEEEE-SS--EEEEEETTT
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEE--EEcC----CcceEEEcCCceEEEEEEccC
Confidence 322 012222222567899999876 44444334 7776 3333 222333335677778888877
Q ss_pred CEEEEEEcCCeEEEEECC
Q 003177 786 PSLLVIGCYETLELWNMT 803 (842)
Q Consensus 786 ~~L~sgs~dg~I~Iwdl~ 803 (842)
+.++....++.|..+.+.
T Consensus 245 ~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TEEEEE-TT--EEEEE--
T ss_pred CEEEEEECCCCEEEEEEC
Confidence 788888888888887764
No 348
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.11 E-value=0.0031 Score=68.56 Aligned_cols=239 Identities=12% Similarity=0.131 Sum_probs=143.8
Q ss_pred EEEEcCCCCEEEEEE----------CCCcEEEEecCCCeEEEEeccCCC-------CeEEEEEcCCCCEEEEEeC--CCe
Q 003177 565 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLSRLATSSA--DRT 625 (842)
Q Consensus 565 sv~fSpdg~~Lasgs----------~Dg~I~vwd~~t~~~~~~l~~h~~-------~I~~l~fspdg~~Latgs~--Dg~ 625 (842)
.+.++||++.+++++ ..-.|.+||..+......+.-... ....+.++.|++++++... .-.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 467899999888753 234799999999988765532211 1234577888888777654 346
Q ss_pred EEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCceeeEEee-----cCC-eeEEEEeCC
Q 003177 626 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC-----QSG-ATQMRFQPR 698 (842)
Q Consensus 626 I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~~~~-----~~~-i~~v~~sp~ 698 (842)
|.|.|+...+. +..+.-. . |.-..|.++.-|.+-+.||.+....+. .|+...+... ... +..-.+...
T Consensus 120 VtVVDl~~~kv-v~ei~~P--G--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 120 VTVVDLAAKKV-VGEIDTP--G--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEETTTTEE-EEEEEGT--S--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred EEEEECCCCce-eeeecCC--C--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 88888887553 3333311 1 222234443345566679999999887 4555432211 111 234455666
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE--EEEeCC----------CCCEEEEEEcCCCCEEEEEe----CC-------eEEEE
Q 003177 699 LGRILAAAIENYISILDVETQVCR--LKLQGH----------KNQVHSVCWNTSGEYLASVS----DE-------LVRVW 755 (842)
Q Consensus 699 g~~l~~~s~dg~I~IwDl~t~~~~--~~l~~h----------~~~V~sl~~spdg~~Lasgs----Dg-------~I~Iw 755 (842)
++.++..+.+|.|+-.|+...... ..+..- .+.-.-+++++....|++.- ++ .|-+|
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 777888999999999998866432 222211 11223467776555444432 22 68888
Q ss_pred EcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCeEEEEcc
Q 003177 756 SIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTLSA 812 (842)
Q Consensus 756 Dl~s~~~~~~i~~~~~~~~~I~sv~~spdg~-~L~sgs-~dg~I~Iwdl~~~~~~~~~~ 812 (842)
|+.++ +.+.++.. ..++.++.++.+.+ .|++.+ .++.|.+||..+++.+....
T Consensus 275 D~~t~---krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 275 DLKTH---KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp ETTTT---EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ECCCC---eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 88887 67776664 34577899998875 555554 46799999999999884443
No 349
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.05 E-value=0.003 Score=74.48 Aligned_cols=186 Identities=10% Similarity=0.027 Sum_probs=115.1
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEeccCC-CCeE---E-------EEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeE
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~-~~I~---~-------l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~ 640 (842)
+..|++++.++.|+-+|..+++.+-.+.... ..+. + +++ .+..++.++.|+.|..+|..+++.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4477777778899999999999887664211 1111 1 122 2346778888999999999988754332
Q ss_pred eec-Cc--cceEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCceeeEEeecCC----------------------
Q 003177 641 FTG-HS--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSG---------------------- 689 (842)
Q Consensus 641 ~~~-h~--~~V~s-l~fspdg~~llasgs-----~Dg~I~vwDl~t~~~i~~~~~~~~---------------------- 689 (842)
-.. +. ..+.+ ..+. + ..+++..+ .+|.|..+|.++|+.+..+.....
T Consensus 147 ~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 211 11 11111 1111 2 33443322 268999999999998876653111
Q ss_pred -----------eeEEEEeCCCCEEEEEEcC-----C-----------eEEEEECCCCeEEEEEeCCCCCE---------E
Q 003177 690 -----------ATQMRFQPRLGRILAAAIE-----N-----------YISILDVETQVCRLKLQGHKNQV---------H 733 (842)
Q Consensus 690 -----------i~~v~~sp~g~~l~~~s~d-----g-----------~I~IwDl~t~~~~~~l~~h~~~V---------~ 733 (842)
-..+++.+..+.++.+... + .|.-.|+++++.+..+......+ .
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 0134667777777776622 1 68888999999988877522211 2
Q ss_pred EEEEcCCCC---EEEEEe-CCeEEEEEcCCCC
Q 003177 734 SVCWNTSGE---YLASVS-DELVRVWSIGSGS 761 (842)
Q Consensus 734 sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~ 761 (842)
-+.+..+|+ .++.+. +|.+++.|.++++
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 223334666 666666 9999999999884
No 350
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.02 E-value=2.6e-06 Score=96.12 Aligned_cols=197 Identities=12% Similarity=0.117 Sum_probs=127.1
Q ss_pred CCeEEEEEcCCC--CEEEEEECCCcEEEEecCCCeE--EEEeccCCCCeEEEEEcC-CCCEEEEEeC----CCeEEEEEc
Q 003177 561 SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSA----DRTVRVWDT 631 (842)
Q Consensus 561 ~~V~sv~fSpdg--~~Lasgs~Dg~I~vwd~~t~~~--~~~l~~h~~~I~~l~fsp-dg~~Latgs~----Dg~I~IWDl 631 (842)
..+.|++++.+. .++++|..+|.|.+-......- .....+|...+++++|++ |.+.||.|-. |..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 447788876644 4788999999999987654221 234567888999999998 5566666632 567999999
Q ss_pred CCCC----ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc-eeeEEeecCCeeEEEEeCCCCEEEEEE
Q 003177 632 ENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAA 706 (842)
Q Consensus 632 ~t~~----~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~~~~~i~~v~~sp~g~~l~~~s 706 (842)
.+.- .......+......+++|..+ ..++.+|.....|.++|++... ....+. ..-+..+.+.|-....++..
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svn-Tk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVN-TKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhh-hhhcccceecCCCCCceecc
Confidence 8641 111111223355668999866 4467788888899999998321 111111 12455667777444456666
Q ss_pred cCCeEEEEE-CCCCe-EEEEEeCCC----CCEEEEEEcCCCC-EEEEEe--CCeEEEEEcCC
Q 003177 707 IENYISILD-VETQV-CRLKLQGHK----NQVHSVCWNTSGE-YLASVS--DELVRVWSIGS 759 (842)
Q Consensus 707 ~dg~I~IwD-l~t~~-~~~~l~~h~----~~V~sl~~spdg~-~Lasgs--Dg~I~IwDl~s 759 (842)
.||.|.+|| .++-+ ++..+...+ ..+..++|+|... .+++.. .++|++||+..
T Consensus 215 ~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 799999999 33332 222222112 2489999999643 444455 56999999864
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.99 E-value=0.0016 Score=68.77 Aligned_cols=199 Identities=12% Similarity=0.170 Sum_probs=114.2
Q ss_pred EeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec--CCeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 640 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 717 (842)
Q Consensus 640 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~--~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~ 717 (842)
.+.+-...+..|+|+|+.+.++++....+.|..++.. |+.++.+... .....|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3445556799999999989899999999999999975 8888887753 457888998776555544447899999884
Q ss_pred CC------eEEEEEe-----CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC--CCCceeEEEe------ecCCCceE
Q 003177 718 TQ------VCRLKLQ-----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS--GSKGECIHEL------SCTGNKFH 777 (842)
Q Consensus 718 t~------~~~~~l~-----~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s--~~~~~~i~~~------~~~~~~I~ 777 (842)
.. .....+. .+...+-.++|++.+..|+++. ..-..||.+.. ......+... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 21 1111221 2445689999999877777666 55555666553 1110111111 11335678
Q ss_pred EEEEeCCCCEEEEEEcC-CeEEEEECCCCeEE---EEcc--C-----CCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 778 SCVFHPTFPSLLVIGCY-ETLELWNMTENKTL---TLSA--H-----DKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 778 sv~~spdg~~L~sgs~d-g~I~Iwdl~~~~~~---~~~~--h-----~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
.++++|....|++-+.. ..|.++| ..|+++ .+.. | -.....|+|.++|+++++ ++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 99999987766666654 5888899 556655 2222 1 124678999999966554 466666654
No 352
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.99 E-value=0.00095 Score=76.05 Aligned_cols=114 Identities=10% Similarity=0.144 Sum_probs=83.9
Q ss_pred ccceEEEEEcCCCCcEEEEE----eCCCc----EEEEECCCCce----eeEEeecCCeeEEEEeCCCCEEEEEEcCCeEE
Q 003177 645 STTVMSLDFHPSKEDLLCSC----DNNSE----IRYWSINNGSC----AGVFKCQSGATQMRFQPRLGRILAAAIENYIS 712 (842)
Q Consensus 645 ~~~V~sl~fspdg~~llasg----s~Dg~----I~vwDl~t~~~----i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~ 712 (842)
.....++.|+-..++.+.+. +.+|. ..+|++...+. +..+...+.+.+++++|+...++.|+.||.|.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 34456777776555555543 22343 34566654432 23444578899999999999999999999999
Q ss_pred EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003177 713 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 760 (842)
Q Consensus 713 IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 760 (842)
+||...+..... ...-.++.++|+|+|.++++|+ .|.+.+||+.-.
T Consensus 285 LyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999987744333 3445678999999999999999 699999998754
No 353
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.99 E-value=0.0036 Score=70.17 Aligned_cols=229 Identities=18% Similarity=0.201 Sum_probs=134.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEe-ccC----------------CCCeEEEEEcCCCCEEEEEeC
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEH----------------TQWITDVRFSPSLSRLATSSA 622 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l-~~h----------------~~~I~~l~fspdg~~Latgs~ 622 (842)
...+....|||+|+.||... ++.|++++..++.....- .+. -+.-..+.|+||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788999999999999886 589999998877544222 110 112356889999999987643
Q ss_pred C-C-----------------------------------eEEEEEcCCCCce-eeEe---ecCccceEEEEEcCCCCcEEE
Q 003177 623 D-R-----------------------------------TVRVWDTENPDYS-LRTF---TGHSTTVMSLDFHPSKEDLLC 662 (842)
Q Consensus 623 D-g-----------------------------------~I~IWDl~t~~~~-i~~~---~~h~~~V~sl~fspdg~~lla 662 (842)
| . .+.|+|+.+++.. +... ..-...+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 2 1 1334455444321 1111 123456788999998773443
Q ss_pred -EEeCC---CcEEEEECCCCceeeEEeecCC-----eeEEEEe-CCCCEEEEE-EcCC--eEEEEECCCCeEEEEEeCCC
Q 003177 663 -SCDNN---SEIRYWSINNGSCAGVFKCQSG-----ATQMRFQ-PRLGRILAA-AIEN--YISILDVETQVCRLKLQGHK 729 (842)
Q Consensus 663 -sgs~D---g~I~vwDl~t~~~i~~~~~~~~-----i~~v~~s-p~g~~l~~~-s~dg--~I~IwDl~t~~~~~~l~~h~ 729 (842)
....+ ..+.++|..++++...+..... .....+. +++..++.. ..+| .|++++...+... .+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence 33333 2577778887766554443221 2355555 666665544 4555 5677777777644 555455
Q ss_pred CCEEE-EEEcCCCCEEEEEe--CC----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003177 730 NQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 793 (842)
Q Consensus 730 ~~V~s-l~~spdg~~Lasgs--Dg----~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~ 793 (842)
-.|+. +.|+++++.|+..+ ++ .|+..++..+ ..+..+.+.......+.|+|++++++....
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 56754 67888877665444 22 5666666612 344555554444479999999998876554
No 354
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.98 E-value=0.0031 Score=69.64 Aligned_cols=214 Identities=13% Similarity=0.098 Sum_probs=125.0
Q ss_pred CcEEEEecCCCeEEEEecc-CCCCeEEE---EEcCC----CCEEEEEeC----------CCeEEEEEcCCC-----Ccee
Q 003177 582 KKAVLWCTESFTVKSTLEE-HTQWITDV---RFSPS----LSRLATSSA----------DRTVRVWDTENP-----DYSL 638 (842)
Q Consensus 582 g~I~vwd~~t~~~~~~l~~-h~~~I~~l---~fspd----g~~Latgs~----------Dg~I~IWDl~t~-----~~~i 638 (842)
..|++.|..+.+.+.++.- ....|+++ .|..+ ..+|++|+. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3588888888877755532 22334444 34332 467777754 289999999874 2222
Q ss_pred eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc-eeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 639 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 717 (842)
Q Consensus 639 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~ 717 (842)
.......++|++++-. ++.++++. ++.|.+|++...+ ....-.....+..+.....++++++|.....|.++..+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 2233456889999877 34455444 5899999998877 55555544444444444446799999988888877443
Q ss_pred C-CeEEEEE--eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC--------CceeEEEeecCCCceEEE---EEe
Q 003177 718 T-QVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS--------KGECIHELSCTGNKFHSC---VFH 782 (842)
Q Consensus 718 t-~~~~~~l--~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~--------~~~~i~~~~~~~~~I~sv---~~s 782 (842)
. ...+..+ ......+++++|-++++.++++. +|.|.++...... ....+..+. .+..|+++ .+.
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEee
Confidence 2 2222222 22455688999986667777777 9999999886311 112223333 34556666 444
Q ss_pred C--CCC------EEEEEEcCCeEEEE
Q 003177 783 P--TFP------SLLVIGCYETLELW 800 (842)
Q Consensus 783 p--dg~------~L~sgs~dg~I~Iw 800 (842)
| .+. .++.++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 4 222 48888889987743
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.98 E-value=0.0013 Score=72.75 Aligned_cols=208 Identities=13% Similarity=0.114 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCceeeEee-cCccceEEEE---EcCC---CCcEEEEEeC----------CCcEEEEECCCC-----c--e
Q 003177 625 TVRVWDTENPDYSLRTFT-GHSTTVMSLD---FHPS---KEDLLCSCDN----------NSEIRYWSINNG-----S--C 680 (842)
Q Consensus 625 ~I~IWDl~t~~~~i~~~~-~h~~~V~sl~---fspd---g~~llasgs~----------Dg~I~vwDl~t~-----~--~ 680 (842)
.|++.|..+... +..+. .....+.+++ +..+ ...+++.|.. .|.|.++++... + .
T Consensus 3 ~i~l~d~~~~~~-~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEV-LDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTSSE-EEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCCeE-EEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 577777766543 22222 2233444444 3322 1445555532 288999999884 2 3
Q ss_pred eeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe-EEEE-EeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003177 681 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 757 (842)
Q Consensus 681 i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~-~~~~-l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl 757 (842)
+......+.|++++-. ++. ++++.++.|.+|++...+ .... +......+.++... +.+|++|. ...|.++.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 3344457888888877 345 445556999999998776 3332 22233466666654 55888888 666666654
Q ss_pred CCCCCceeEEE--eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------C--eEE--EEccCCCCeeEE---E
Q 003177 758 GSGSKGECIHE--LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-------N--KTL--TLSAHDKLVSSL---A 821 (842)
Q Consensus 758 ~s~~~~~~i~~--~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~-------~--~~~--~~~~h~~~V~sl---a 821 (842)
.... ..+.. -......++++.+-++++.++++..+|.|.++.... + ++. ........|+++ +
T Consensus 157 ~~~~--~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 157 DEEN--NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp ETTT--E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred EccC--CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 4321 22222 223355688888886667899999999999998753 2 222 233445678877 4
Q ss_pred EeCC--CC------EEEEEeCCCcEEE
Q 003177 822 ASTV--NG------MVASASHDKCVKI 840 (842)
Q Consensus 822 ~spd--g~------~Lasgs~DG~V~I 840 (842)
+.|. +. .++.++.+|.|.+
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEE
Confidence 4451 22 4778889998863
No 356
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.98 E-value=0.0015 Score=73.83 Aligned_cols=207 Identities=14% Similarity=0.120 Sum_probs=122.5
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEe--cc------CCCCeEEEEEcC-----CC-
Q 003177 549 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL- 614 (842)
Q Consensus 549 ~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l--~~------h~~~I~~l~fsp-----dg- 614 (842)
.|.....+....++|++++.|.=| ++|+|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 477888888889999999998555 9999999999999999887777552 22 345688888863 32
Q ss_pred --CEEEEEeCCCeEEEEEcCC---CCcee---eEeecCccceEEEE-EcCCC--------------------CcEEEEEe
Q 003177 615 --SRLATSSADRTVRVWDTEN---PDYSL---RTFTGHSTTVMSLD-FHPSK--------------------EDLLCSCD 665 (842)
Q Consensus 615 --~~Latgs~Dg~I~IWDl~t---~~~~i---~~~~~h~~~V~sl~-fspdg--------------------~~llasgs 665 (842)
-++++|...|.+.+|.+.- +...+ .....+.+.|..|. |+.+. +.++++++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 4688999999999998752 12211 11224556666665 32221 12444444
Q ss_pred CCCcEEEEECCCCceeeEEeecCCe--eEEEEe-----CCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC----CCEEE
Q 003177 666 NNSEIRYWSINNGSCAGVFKCQSGA--TQMRFQ-----PRLGRILAAAIENYISILDVETQVCRLKLQGHK----NQVHS 734 (842)
Q Consensus 666 ~Dg~I~vwDl~t~~~i~~~~~~~~i--~~v~~s-----p~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~----~~V~s 734 (842)
+..++++...+.+...... ...+ ..+++. ..+..|++...+|.|++|.+-.-+.+..+.-.. ..+..
T Consensus 234 -e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 234 -ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp -SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred -ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 7789999999888766555 3322 233442 245668888899999999999988887766432 23445
Q ss_pred EEEcCCCCEEEEEeCCeEEEEEcC
Q 003177 735 VCWNTSGEYLASVSDELVRVWSIG 758 (842)
Q Consensus 735 l~~spdg~~LasgsDg~I~IwDl~ 758 (842)
.+++++|..++-.+...+.++.+-
T Consensus 312 ssis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 312 SSISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp -EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred cEECCCCCEEEEeCcccEEEEEEE
Confidence 677889998888876666555543
No 357
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.94 E-value=0.018 Score=67.93 Aligned_cols=149 Identities=13% Similarity=0.082 Sum_probs=89.2
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEecc--CC--CCeEE-EEEcCCCCEEEEEe------CCCeEEEEEcCCCCceeeE
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEE--HT--QWITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~--h~--~~I~~-l~fspdg~~Latgs------~Dg~I~IWDl~t~~~~i~~ 640 (842)
+..|++++.|+.|..+|..+|+.+-.... +. ..+++ .... ++ .|++++ .+|.|..+|.++++.....
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 34677788899999999999999866542 11 11211 1111 34 455543 2689999999887753322
Q ss_pred eecCc------------------------------cceE-EEEEcCCCCcEEEEEeC----CC-----------cEEEEE
Q 003177 641 FTGHS------------------------------TTVM-SLDFHPSKEDLLCSCDN----NS-----------EIRYWS 674 (842)
Q Consensus 641 ~~~h~------------------------------~~V~-sl~fspdg~~llasgs~----Dg-----------~I~vwD 674 (842)
..... ..++ .+.+.+..+.+++..+. ++ .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 11110 1111 23566654433333222 12 678889
Q ss_pred CCCCceeeEEeec-C---------CeeEEEEeCCCC---EEEEEEcCCeEEEEECCCCeEE
Q 003177 675 INNGSCAGVFKCQ-S---------GATQMRFQPRLG---RILAAAIENYISILDVETQVCR 722 (842)
Q Consensus 675 l~t~~~i~~~~~~-~---------~i~~v~~sp~g~---~l~~~s~dg~I~IwDl~t~~~~ 722 (842)
+++|+....+... . ...-+.+..+++ .++.+..+|.++++|.++++.+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 9999998887741 1 112222334555 5668888999999999999876
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.90 E-value=0.015 Score=66.44 Aligned_cols=208 Identities=12% Similarity=0.074 Sum_probs=109.9
Q ss_pred EEEcCCCCEEEEEECC----------C-cEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003177 566 CHFSPDGKLLATGGHD----------K-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 634 (842)
Q Consensus 566 v~fSpdg~~Lasgs~D----------g-~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~ 634 (842)
++.+|.|..||....+ . .|.||+.. |+.+.++.-..+.|.++.|+.+. .|++...||.+++||+...
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCc
Confidence 3445555555554333 2 48999854 55666654444889999999864 5556668999999998632
Q ss_pred C-----ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc-eeeEEe-ecC---------CeeE-EEEeC
Q 003177 635 D-----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQS---------GATQ-MRFQP 697 (842)
Q Consensus 635 ~-----~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~-~~~---------~i~~-v~~sp 697 (842)
. ..+....-....|..+.+..+| +++.. .++.+.+.+-.... ..+.+. ... .... ..++.
T Consensus 112 ~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt-~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~ 188 (410)
T PF04841_consen 112 FQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLT-GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS 188 (410)
T ss_pred eeechhhhccccCcccccccccccCCCC--EEEEC-CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec
Confidence 2 0011111111222222333333 33232 34444444322211 111111 001 0111 23444
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCc
Q 003177 698 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNK 775 (842)
Q Consensus 698 ~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~ 775 (842)
+....+....++.+.+.+...... +. ..+++..+++||++++||.-. +|.+.|.+..-. +.+..+... ...
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~ 261 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSP 261 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCC
Confidence 445555555556666444332211 11 346899999999999999988 789888876544 344444433 345
Q ss_pred eEEEEEeCCC
Q 003177 776 FHSCVFHPTF 785 (842)
Q Consensus 776 I~sv~~spdg 785 (842)
...+.|.-+.
T Consensus 262 p~~~~WCG~d 271 (410)
T PF04841_consen 262 PKQMAWCGND 271 (410)
T ss_pred CcEEEEECCC
Confidence 5667776654
No 359
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.90 E-value=0.0044 Score=66.64 Aligned_cols=215 Identities=14% Similarity=0.139 Sum_probs=125.0
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceee---------
Q 003177 612 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--------- 682 (842)
Q Consensus 612 pdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~--------- 682 (842)
..++.|+.|+.+| |+++++.......... +...|..+...++-+.+++.+ |+.|+++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence 3578899999998 9999994333322322 233499999999877666554 5999999987644333
Q ss_pred ------EEeecCCeeEEE--EeCCCCEEEEEEcCCeEEEEECCCC-----eEEEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 003177 683 ------VFKCQSGATQMR--FQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVSD 749 (842)
Q Consensus 683 ------~~~~~~~i~~v~--~sp~g~~l~~~s~dg~I~IwDl~t~-----~~~~~l~~h~~~V~sl~~spdg~~LasgsD 749 (842)
.+....++..++ -...+...+++.....|.+|..... +....+. -...+.+++|. +..|+.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 122223344444 2234556667777779998887653 3444444 45788999998 667887877
Q ss_pred CeEEEEEcCCCCCceeEEEeecC----------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EEccCCCCe
Q 003177 750 ELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLV 817 (842)
Q Consensus 750 g~I~IwDl~s~~~~~~i~~~~~~----------~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~--~~~~h~~~V 817 (842)
+...+.|+.++.. ..+...... ..++..+.+ +++.+|++ .+..-.+.|....... .+.- ...+
T Consensus 157 ~~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~--~~~~g~fv~~~G~~~r~~~i~W-~~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC--YDNIGVFVNKNGEPSRKSTIQW-SSAP 231 (275)
T ss_pred CceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE--ecceEEEEcCCCCcCcccEEEc-CCch
Confidence 7799999997643 222211111 122333333 33455543 2333344454332211 1211 2345
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 818 SSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 818 ~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.++++. ..+|+..+.+ .|.||+
T Consensus 232 ~~~~~~--~pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 232 QSVAYS--SPYLIAFSSN-SIEVRS 253 (275)
T ss_pred hEEEEE--CCEEEEECCC-EEEEEE
Confidence 566664 4577776654 488774
No 360
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.0014 Score=75.61 Aligned_cols=139 Identities=13% Similarity=0.100 Sum_probs=96.2
Q ss_pred ccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003177 507 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 586 (842)
Q Consensus 507 l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~v 586 (842)
++..+.+++.|+..+.+.+|..+....- .....+-.+.+..+++|++..++|.|+..|.|.|
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~------------------~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMR------------------KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSV 102 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhh------------------cccccCccceEEEEEecchhHhhhhhcCCceEEe
Confidence 4556789999999999999966554211 1111123445677788988889999999999999
Q ss_pred EecCCCeE-----EEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC---CceeeEeecCccceEEEEEcCCC
Q 003177 587 WCTESFTV-----KSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSK 657 (842)
Q Consensus 587 wd~~t~~~-----~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~---~~~i~~~~~h~~~V~sl~fspdg 657 (842)
+-+..... +..+ ..|...|+|++|++|+..+++|...|+|.+-.++.. ......+....+.|.-|++..
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-- 180 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-- 180 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--
Confidence 97654221 1112 247889999999999999999999999999888761 112334444567777777763
Q ss_pred CcEEEEEe
Q 003177 658 EDLLCSCD 665 (842)
Q Consensus 658 ~~llasgs 665 (842)
.++|++..
T Consensus 181 ~~LLVStl 188 (726)
T KOG3621|consen 181 SYLLVSTL 188 (726)
T ss_pred ceehHhhh
Confidence 33554443
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.83 E-value=0.011 Score=67.75 Aligned_cols=220 Identities=12% Similarity=0.076 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCEEEEE-eCCC----eEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC----------Cc
Q 003177 605 ITDVRFSPSLSRLATS-SADR----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----------SE 669 (842)
Q Consensus 605 I~~l~fspdg~~Latg-s~Dg----~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D----------g~ 669 (842)
+..++++||+++||.+ +..| .|+++|+.++......+... ....+.|.+++..++++...+ ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 4467899999998865 3333 69999999875433333321 223499999988888776433 24
Q ss_pred EEEEECCCCcee--eEEeecC--C-eeEEEEeCCCCEEEEEEcC----CeEEEEECCCC-----eEEEEEeCCCCCEEEE
Q 003177 670 IRYWSINNGSCA--GVFKCQS--G-ATQMRFQPRLGRILAAAIE----NYISILDVETQ-----VCRLKLQGHKNQVHSV 735 (842)
Q Consensus 670 I~vwDl~t~~~i--~~~~~~~--~-i~~v~~sp~g~~l~~~s~d----g~I~IwDl~t~-----~~~~~l~~h~~~V~sl 735 (842)
|++|.+.+.... ..+.... . ...+..+++++++++.... ..+++.|+..+ ..........+....+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 788888776433 4444322 2 5678889999998876543 45888898874 3333333333333344
Q ss_pred EEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECC-CCeE
Q 003177 736 CWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT-ENKT 807 (842)
Q Consensus 736 ~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg---~I~Iwdl~-~~~~ 807 (842)
... .+.+++... .+.|...++...........+..+...+.-..+...+.+|++...++ .|+++++. +...
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEE
Confidence 443 444444443 45787788877653223334444555444444444555666655544 79999999 5544
Q ss_pred EEEcc-CCCCeeEEEEeCCCC
Q 003177 808 LTLSA-HDKLVSSLAASTVNG 827 (842)
Q Consensus 808 ~~~~~-h~~~V~sla~spdg~ 827 (842)
..+.. -.+.|..+...+++.
T Consensus 363 ~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 363 REIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEESSSSSEEEEEES-TT-S
T ss_pred eeecCCcceEEeccCCCCCCC
Confidence 43332 234455555555554
No 362
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.80 E-value=6.6e-06 Score=93.00 Aligned_cols=197 Identities=18% Similarity=0.267 Sum_probs=134.0
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCce-eeEeecCccceEEEEEcCCCCcEEEEEe----CCCcEEEEEC
Q 003177 603 QWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSI 675 (842)
Q Consensus 603 ~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~t~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs----~Dg~I~vwDl 675 (842)
..+.|+++..+ ..++++|..+|.|-+-.+...... .....+|....++++|++-...+||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 34566666554 346788999999999888765443 4456678889999999987666776663 4668999999
Q ss_pred CCC--ceeeE--Ee--ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe-EEEEEeCCCCCEEEEEEcC-CCCEEEEE
Q 003177 676 NNG--SCAGV--FK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNT-SGEYLASV 747 (842)
Q Consensus 676 ~t~--~~i~~--~~--~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~-~~~~l~~h~~~V~sl~~sp-dg~~Lasg 747 (842)
.++ .+... +. ...+..+++|..+.+.+++|.....+.++|++-.. ....+ .+..+..+..+| .+.|+++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 876 22211 11 23456789999888888899999999999998332 11111 233566788888 78899888
Q ss_pred eCCeEEEEEc-CCCCCceeEEEeecC----CCceEEEEEeCCCCE-EEEEEcC-CeEEEEECC
Q 003177 748 SDELVRVWSI-GSGSKGECIHELSCT----GNKFHSCVFHPTFPS-LLVIGCY-ETLELWNMT 803 (842)
Q Consensus 748 sDg~I~IwDl-~s~~~~~~i~~~~~~----~~~I~sv~~spdg~~-L~sgs~d-g~I~Iwdl~ 803 (842)
.||.|.+||. +.-+ ..+..+... ...+..++|.|...- +++...| ++|++||+.
T Consensus 215 ~dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 8999999993 3322 222222222 234889999997643 4444444 489999984
No 363
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.79 E-value=0.0082 Score=65.57 Aligned_cols=219 Identities=11% Similarity=0.051 Sum_probs=133.7
Q ss_pred EEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe
Q 003177 607 DVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 685 (842)
Q Consensus 607 ~l~fspdg~~La-tgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~ 685 (842)
+..|.++...|+ +--..+.|.-|+..++.. ..+. +...+.++.....+. .|+++ +..+.+++.+++..+..+.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g-~Lv~~--~~g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGG-RLIAC--EHGVRLLDPDTGGKITLLA 102 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCC-eEEEE--ccccEEEeccCCceeEEec
Confidence 345667666444 444577889998886553 3333 233345555444444 44455 3456777776666533332
Q ss_pred e------cCCeeEEEEeCCCCEEEEEEc-----------CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 003177 686 C------QSGATQMRFQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 748 (842)
Q Consensus 686 ~------~~~i~~v~~sp~g~~l~~~s~-----------dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs 748 (842)
. ....+.+.+.|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+.
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence 1 234667888999887765444 134555565 4555555555555667899999998888777
Q ss_pred --CCeEEEEEcCC--CCCce--eEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEE-EEccCCCCeeEE
Q 003177 749 --DELVRVWSIGS--GSKGE--CIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAHDKLVSSL 820 (842)
Q Consensus 749 --Dg~I~IwDl~s--~~~~~--~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg-~I~Iwdl~~~~~~-~~~~h~~~V~sl 820 (842)
.+.|..|++.. +.... ....+....+..-.++...+|.+.+++...| .|.+|+.. ++++ .+.-....++++
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP 260 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence 57888888762 21111 1222333456677788889998665555554 99999998 6666 444444778888
Q ss_pred EEeC-CCCEEEEEe
Q 003177 821 AAST-VNGMVASAS 833 (842)
Q Consensus 821 a~sp-dg~~Lasgs 833 (842)
+|-- +.+.|++.+
T Consensus 261 ~FgG~~~~~L~iTs 274 (307)
T COG3386 261 AFGGPDLNTLYITS 274 (307)
T ss_pred eEeCCCcCEEEEEe
Confidence 8864 445444333
No 364
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.077 Score=56.01 Aligned_cols=270 Identities=10% Similarity=0.041 Sum_probs=149.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 638 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i 638 (842)
+-+..+.|+ +++...+..+.-++|+|+.+......+.. ..+.-.++.. .|++..++..|.-+.+.|+.++..+.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 345666776 55778888888899999986543322211 1233344444 58899888867778899998776543
Q ss_pred e--EeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc---eeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 003177 639 R--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 713 (842)
Q Consensus 639 ~--~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~---~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~I 713 (842)
. .+.........++.+ |+ ..+.+..|+-+.+.|+.... .+........+.++..+++ +.+....+..+.+
T Consensus 163 lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy~egvli 237 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVYDEGVLI 237 (370)
T ss_pred eeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEcccceEE
Confidence 2 333344445677777 33 45566678899999997643 3444444556777777765 3444444556777
Q ss_pred EECCCCeEEEEEeC-CCCCEEEE-EEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003177 714 LDVETQVCRLKLQG-HKNQVHSV-CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 790 (842)
Q Consensus 714 wDl~t~~~~~~l~~-h~~~V~sl-~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~s 790 (842)
.|..+.+....+.. ....+.++ .+.-.+++..... +..+-+.|+.+.........+...+..-..+..+ +.+++.
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yi 315 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYI 315 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEe
Confidence 78776653333321 12222222 2333455555555 5566677776553322222222222222223322 223343
Q ss_pred EEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 791 IGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 791 gs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+..+ ...+.+....+.. ...+....+.+.+.+-+.+++.+...++.+.||+
T Consensus 316 adkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 316 ADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred ccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 3333 3444444433322 1112222233444444566788888999998885
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.64 E-value=0.006 Score=73.74 Aligned_cols=142 Identities=8% Similarity=0.099 Sum_probs=98.0
Q ss_pred CCEEEEE-eCCCeEEEEEcCCCCceeeEeecCccc-eEEEEEcC-----CCCcEEEEEeCCCcEEEEECCCCc--eee--
Q 003177 614 LSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP-----SKEDLLCSCDNNSEIRYWSINNGS--CAG-- 682 (842)
Q Consensus 614 g~~Latg-s~Dg~I~IWDl~t~~~~i~~~~~h~~~-V~sl~fsp-----dg~~llasgs~Dg~I~vwDl~t~~--~i~-- 682 (842)
.++|+.. .....|+-.|++.++. +..+..|... |..++-.. +....+ .|-.+..|..||.+-.. ++.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKV-V~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKV-VEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcE-EEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeecc
Confidence 3444433 3457899999998764 7777766543 55554321 112223 56668899999998632 221
Q ss_pred --EEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003177 683 --VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 758 (842)
Q Consensus 683 --~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~ 758 (842)
.+.......|++-+.+ ++|++|+.+|.|++||--.......+.+-..+|.+|+.+.||++|++.++..|.+++..
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ccccccCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 2223344666665554 78999999999999995443444556677899999999999999999999999999863
No 366
>PRK10115 protease 2; Provisional
Probab=97.64 E-value=0.1 Score=63.77 Aligned_cols=238 Identities=10% Similarity=-0.013 Sum_probs=123.4
Q ss_pred eEEEEEcCCCCEEEEEECC-----CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEc
Q 003177 563 VESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT 631 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~D-----g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D------g~I~IWDl 631 (842)
+..+.|||||++|+.+... ..|++.|+.+++.+...-... -..++|.+|++.|+.+..+ ..|+++++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 6678899999998876432 368888998876432221111 1469999998877666542 36888888
Q ss_pred CCCCc-eeeEeecCccceE-EEEEcCCCCcEEEEEe--CCCcEEEEECC--CCceeeEEeecCCeeEEEEeCCCCEEEEE
Q 003177 632 ENPDY-SLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAA 705 (842)
Q Consensus 632 ~t~~~-~i~~~~~h~~~V~-sl~fspdg~~llasgs--~Dg~I~vwDl~--t~~~i~~~~~~~~i~~v~~sp~g~~l~~~ 705 (842)
.++.. ....+........ .+..+.++..+++.+. .++.+.+++.. .+.....+.....+..-..+. +..++..
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~ 285 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHY-QHRFYLR 285 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeC-CCEEEEE
Confidence 87621 1233333223333 3333447776665443 34678898853 344333333333332222233 3445444
Q ss_pred EcC----CeEEEEECCCCeEEEEEeCC-C-CCEEEEEEcCCCCEEEEEe-CCe--EEEEEcCCCCCceeEEEee-cCCCc
Q 003177 706 AIE----NYISILDVETQVCRLKLQGH-K-NQVHSVCWNTSGEYLASVS-DEL--VRVWSIGSGSKGECIHELS-CTGNK 775 (842)
Q Consensus 706 s~d----g~I~IwDl~t~~~~~~l~~h-~-~~V~sl~~spdg~~Lasgs-Dg~--I~IwDl~s~~~~~~i~~~~-~~~~~ 775 (842)
+.. ..|...++........+..+ . ..|..+.+..+ .++++.. ++. |++++..++ .+..+. .....
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~~ 360 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPAY 360 (686)
T ss_pred EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCce
Confidence 432 24555555522112233334 3 36778888733 3334444 664 455554322 223322 11222
Q ss_pred eEEEEEe--CCCC-EEEEEEcC---CeEEEEECCCCeEE
Q 003177 776 FHSCVFH--PTFP-SLLVIGCY---ETLELWNMTENKTL 808 (842)
Q Consensus 776 I~sv~~s--pdg~-~L~sgs~d---g~I~Iwdl~~~~~~ 808 (842)
+..+.++ +++. .+++.++. +.|+.||+.+++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 3333344 4444 33333332 38999998877644
No 367
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.62 E-value=0.055 Score=60.55 Aligned_cols=221 Identities=10% Similarity=0.101 Sum_probs=109.0
Q ss_pred CCCEEEEEE-CCCcEEEEecCC----CeEEEEecc---CC----CCeEEEEEcCCCCEEEEEeC------CCeEEEEEcC
Q 003177 571 DGKLLATGG-HDKKAVLWCTES----FTVKSTLEE---HT----QWITDVRFSPSLSRLATSSA------DRTVRVWDTE 632 (842)
Q Consensus 571 dg~~Lasgs-~Dg~I~vwd~~t----~~~~~~l~~---h~----~~I~~l~fspdg~~Latgs~------Dg~I~IWDl~ 632 (842)
+.++|+..+ ..+.|+|+|+.+ -+..++++. +. .....+.-.|+|..++++-. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777666 778999999873 455566542 11 22333444578888887633 2457777776
Q ss_pred CCCceeeEeec---CccceEEEEEcCCCCcEEEEEeC--------------------CCcEEEEECCCCceeeEEeecCC
Q 003177 633 NPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDN--------------------NSEIRYWSINNGSCAGVFKCQSG 689 (842)
Q Consensus 633 t~~~~i~~~~~---h~~~V~sl~fspdg~~llasgs~--------------------Dg~I~vwDl~t~~~i~~~~~~~~ 689 (842)
+.+. ...... ....-+++-|.|..+ +++|... ..++.+||+.+.+.+.++.....
T Consensus 166 tf~v-~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TFEV-KGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T--E-EEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cccc-cceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 5432 233322 123456777888655 5545432 35899999999999999987532
Q ss_pred ---eeEEEEeC--CCCEEEEEE-cCCeEEEE-ECCCCe----EEEEEeCC-----------------CCCEEEEEEcCCC
Q 003177 690 ---ATQMRFQP--RLGRILAAA-IENYISIL-DVETQV----CRLKLQGH-----------------KNQVHSVCWNTSG 741 (842)
Q Consensus 690 ---i~~v~~sp--~g~~l~~~s-~dg~I~Iw-Dl~t~~----~~~~l~~h-----------------~~~V~sl~~spdg 741 (842)
...+.|.. +..+-++++ -...|..| ..+.++ .+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 55677754 444433333 34455444 334432 22222211 2457899999999
Q ss_pred CEEEEEe--CCeEEEEEcCCCCCceeEEEeecCC----------------CceEEEEEeCCCCEEEEEEc
Q 003177 742 EYLASVS--DELVRVWSIGSGSKGECIHELSCTG----------------NKFHSCVFHPTFPSLLVIGC 793 (842)
Q Consensus 742 ~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~----------------~~I~sv~~spdg~~L~sgs~ 793 (842)
++|+.+. +|.|+.||+......+.+..+...+ +...-+..|.||+.|++.++
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 9999988 9999999999877666665543211 22366789999999888764
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.60 E-value=0.017 Score=63.12 Aligned_cols=219 Identities=12% Similarity=0.115 Sum_probs=132.9
Q ss_pred EEEcCCCC-EEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEee--
Q 003177 566 CHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-- 642 (842)
Q Consensus 566 v~fSpdg~-~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~-- 642 (842)
-.|.++.. ++.+--..+.|.-|+..+++.. .+. +...+.++.....+..|+++... +.+++.+++.. +..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~~-~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEHG--VRLLDPDTGGK-ITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEccc--cEEEeccCCce-eEEeccc
Confidence 45666666 4445555678888988766433 232 33344555555555566665433 66777655443 12111
Q ss_pred --c-CccceEEEEEcCCCCcEEEEEe-----C-----CCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcC
Q 003177 643 --G-HSTTVMSLDFHPSKEDLLCSCD-----N-----NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 708 (842)
Q Consensus 643 --~-h~~~V~sl~fspdg~~llasgs-----~-----Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~d 708 (842)
+ -....+.+...|+|...+-+-+ . -|.|+.+|. .+..++.+.. -...+.++|+|+++.++.+...
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 1 1245668888999875553333 1 133555554 3555544443 3446789999999988888775
Q ss_pred -CeEEEEECCC--C----e-EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeecCCCceEE
Q 003177 709 -NYISILDVET--Q----V-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHS 778 (842)
Q Consensus 709 -g~I~IwDl~t--~----~-~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~~~~~I~s 778 (842)
+.|+.|++.. + . ....+..+.+..-.++...+|.+.+++. .| .|.+|+.. + +.+..+......+++
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G---~l~~~i~lP~~~~t~ 259 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G---KLLGEIKLPVKRPTN 259 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C---cEEEEEECCCCCCcc
Confidence 7888887762 1 1 1223333456677888889999886544 44 89999987 5 566666666567777
Q ss_pred EEEe-CCCCEEEEEEcC
Q 003177 779 CVFH-PTFPSLLVIGCY 794 (842)
Q Consensus 779 v~~s-pdg~~L~sgs~d 794 (842)
++|- ++.+.|++.+..
T Consensus 260 ~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 260 PAFGGPDLNTLYITSAR 276 (307)
T ss_pred ceEeCCCcCEEEEEecC
Confidence 7774 455656655543
No 369
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.58 E-value=0.02 Score=63.55 Aligned_cols=242 Identities=11% Similarity=0.119 Sum_probs=122.3
Q ss_pred ecCCCeEEEEeccCCCCeE-----EEEEcCCCCEEEEEeC-CC--eEEEEEcCCCCceeeEeecCc-cceEEEEEcCCCC
Q 003177 588 CTESFTVKSTLEEHTQWIT-----DVRFSPSLSRLATSSA-DR--TVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKE 658 (842)
Q Consensus 588 d~~t~~~~~~l~~h~~~I~-----~l~fspdg~~Latgs~-Dg--~I~IWDl~t~~~~i~~~~~h~-~~V~sl~fspdg~ 658 (842)
|..+|..+..+..+..... .=+|.+||+.|+.++. || .+++.|+.+++ +..++... .......++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCCC
Confidence 6677777777754443332 2357778877766555 55 56666777654 55555443 2233566778877
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeecCCee-EEEEe--CCCCEEEEEEc----------------------CCeEEE
Q 003177 659 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQ--PRLGRILAAAI----------------------ENYISI 713 (842)
Q Consensus 659 ~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~-~v~~s--p~g~~l~~~s~----------------------dg~I~I 713 (842)
.+++.. .+..|+..|+.+.+....+..+.... ...|. .++..++..-. ...|..
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 665544 45689999999988777777655543 35553 34444332221 124777
Q ss_pred EECCCCeEEEEEeCCCCCEEEEEEcCCCC-EEEEEeCC-----eEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCC
Q 003177 714 LDVETQVCRLKLQGHKNQVHSVCWNTSGE-YLASVSDE-----LVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFP 786 (842)
Q Consensus 714 wDl~t~~~~~~l~~h~~~V~sl~~spdg~-~LasgsDg-----~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~~spdg~ 786 (842)
.|+.+++....+. ....+..+.|+|... +|+.|.+| .-+||-+++... ...++.- .....+..=-|.+||.
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGS 250 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS
T ss_pred EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCC
Confidence 7888887665555 566888999999654 45555544 247787765321 1222221 1233445557999998
Q ss_pred EEEEEEc-----CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCC
Q 003177 787 SLLVIGC-----YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 835 (842)
Q Consensus 787 ~L~sgs~-----dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~D 835 (842)
.|..-+. +..|.-+|+.+++...+..- .....+-.++||+++|-=+.|
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCC
Confidence 8776543 23677788888865533222 234466667898887654444
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.57 E-value=0.0082 Score=71.42 Aligned_cols=208 Identities=13% Similarity=0.126 Sum_probs=115.3
Q ss_pred CCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe------CCC--eEEEEEcCCCCceeeEeecCccceEEEE
Q 003177 581 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------ADR--TVRVWDTENPDYSLRTFTGHSTTVMSLD 652 (842)
Q Consensus 581 Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs------~Dg--~I~IWDl~t~~~~i~~~~~h~~~V~sl~ 652 (842)
+|.+.-.+-.....+.-..+....+...+++|||..++... .|. .|.+++.. ........+ ...+.-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g--~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEG--HSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecC--CCCCCce
Confidence 56555543222222222223334688999999999887765 244 45555543 222222232 2378899
Q ss_pred EcCCCCcEEEEEe-----------CCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEE---EECCC
Q 003177 653 FHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI---LDVET 718 (842)
Q Consensus 653 fspdg~~llasgs-----------~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~I---wDl~t 718 (842)
|+|+|..+.+... ..+.+.+.++..++... .....|..+.|+|||..++... ++.|++ .....
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9999775554432 12344444555444433 3346799999999999988876 477777 45445
Q ss_pred CeEEE----EEe-CCCCCEEEEEEcCCCCEEEEEeCC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003177 719 QVCRL----KLQ-GHKNQVHSVCWNTSGEYLASVSDE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 791 (842)
Q Consensus 719 ~~~~~----~l~-~h~~~V~sl~~spdg~~LasgsDg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sg 791 (842)
+.... .+. .-...+.++.|..++.+++...++ .|...++.... .....-......+..++-+++ .|++.
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~--~~~~~~~n~~~~v~~vaa~~~--~iyv~ 556 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN--SDALPSRNLSAPVVAVAASPS--TVYVT 556 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc--ccccCCCCccCceEEEecCCc--eEEEE
Confidence 54111 122 233346889999999976554444 34444444321 111011112455666666653 56666
Q ss_pred EcCCeEEE
Q 003177 792 GCYETLEL 799 (842)
Q Consensus 792 s~dg~I~I 799 (842)
..++.+.+
T Consensus 557 ~~~g~~~l 564 (591)
T PRK13616 557 DARAVLQL 564 (591)
T ss_pred cCCceEEe
Confidence 66664443
No 371
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.55 E-value=0.31 Score=58.98 Aligned_cols=166 Identities=10% Similarity=0.023 Sum_probs=106.1
Q ss_pred cEEEEECCCCceeeEEeec-----CCeeEEEEeCC-CCEEEEEEc----------CCeEEEEECCCCeEEEEEeC--CCC
Q 003177 669 EIRYWSINNGSCAGVFKCQ-----SGATQMRFQPR-LGRILAAAI----------ENYISILDVETQVCRLKLQG--HKN 730 (842)
Q Consensus 669 ~I~vwDl~t~~~i~~~~~~-----~~i~~v~~sp~-g~~l~~~s~----------dg~I~IwDl~t~~~~~~l~~--h~~ 730 (842)
.++++|-++.+.+...... ..+.++.|..| +.++++|+. .|.|.+|.......+..... -.+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 4677777776655544432 12445558777 556666653 47888888776332222221 234
Q ss_pred CEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE--CCCCeEE
Q 003177 731 QVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN--MTENKTL 808 (842)
Q Consensus 731 ~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwd--l~~~~~~ 808 (842)
.+.++..- +|++|| +-...|++|++.+. +.++.-..+...+..+.+.-.+..|++|..-+.|.+.. -..|...
T Consensus 831 av~aL~~f-ngkllA-~In~~vrLye~t~~---~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ 905 (1096)
T KOG1897|consen 831 AVYALVEF-NGKLLA-GINQSVRLYEWTTE---RELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFE 905 (1096)
T ss_pred ceeehhhh-CCeEEE-ecCcEEEEEEcccc---ceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceE
Confidence 44444432 555554 44678999999876 55666666778899999999999999999988666554 4444454
Q ss_pred --EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 809 --TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 809 --~~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
.-.-+..+++++.+-.+..+ +.+..+|.+++
T Consensus 906 evArD~~p~Wmtaveil~~d~y-lgae~~gNlf~ 938 (1096)
T KOG1897|consen 906 EVARDYNPNWMTAVEILDDDTY-LGAENSGNLFT 938 (1096)
T ss_pred EeehhhCccceeeEEEecCceE-EeecccccEEE
Confidence 34467788888888655544 44566776654
No 372
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.45 E-value=0.035 Score=63.52 Aligned_cols=188 Identities=10% Similarity=0.096 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec-----CCeeEE-E---E
Q 003177 625 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQM-R---F 695 (842)
Q Consensus 625 ~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-----~~i~~v-~---~ 695 (842)
.|.||+.... .+..+.-..+.|.++.|..+ ..++ +...||.+++||+. |+. .+... ..|... . +
T Consensus 62 ~I~iys~sG~--ll~~i~w~~~~iv~~~wt~~-e~Lv-vV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSGK--LLSSIPWDSGRIVGMGWTDD-EELV-VVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCCCC--EeEEEEECCCCEEEEEECCC-CeEE-EEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccc
Confidence 3666666532 23332222378999999876 4355 45569999999997 333 22211 122221 1 1
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCe-EEEEEe---CCCC------CEEE-EEEcCCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003177 696 QPRLGRILAAAIENYISILDVETQV-CRLKLQ---GHKN------QVHS-VCWNTSGEYLASVS-DELVRVWSIGSGSKG 763 (842)
Q Consensus 696 sp~g~~l~~~s~dg~I~IwDl~t~~-~~~~l~---~h~~------~V~s-l~~spdg~~Lasgs-Dg~I~IwDl~s~~~~ 763 (842)
..+.+ +++...++.|++..-.... ....+. .... .+.. ..++.+....+... ++.+.+.+-...
T Consensus 135 ~~~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--- 210 (410)
T PF04841_consen 135 FYKNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--- 210 (410)
T ss_pred cCCCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc---
Confidence 12223 4444455655554332221 111111 0000 0000 22333444444333 445554443221
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc--cCCCCeeEEEEeCCCC
Q 003177 764 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAASTVNG 827 (842)
Q Consensus 764 ~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~--~h~~~V~sla~spdg~ 827 (842)
..+. ..+++..+++||++++|+.-..+|.+.|.+.+-.+.+... .-......+.|+-+..
T Consensus 211 ---~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 211 ---KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred ---cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 0111 2468999999999999999999999999987665555222 2235667778876543
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00068 Score=77.34 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=79.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSL 638 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~-~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i 638 (842)
.-.|.-+.|+|.-.+||++..+|.|.++.+. ...+.++..|...++ +++|.|||+.||+|-.||+|++.|++++....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3458889999999999999999999999988 677888887887887 99999999999999999999999999877544
Q ss_pred eEeecCccceEEEEEcC
Q 003177 639 RTFTGHSTTVMSLDFHP 655 (842)
Q Consensus 639 ~~~~~h~~~V~sl~fsp 655 (842)
.....-...|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 33333456777887763
No 374
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.028 Score=58.95 Aligned_cols=231 Identities=12% Similarity=0.087 Sum_probs=140.0
Q ss_pred EEEEEcCCCC-EEEEEECCCc-EEEEecCCCeEEEEeccCCCC--eEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCC
Q 003177 564 ESCHFSPDGK-LLATGGHDKK-AVLWCTESFTVKSTLEEHTQW--ITDVRFSPSLSRLATSSAD-----RTVRVWDTENP 634 (842)
Q Consensus 564 ~sv~fSpdg~-~Lasgs~Dg~-I~vwd~~t~~~~~~l~~h~~~--I~~l~fspdg~~Latgs~D-----g~I~IWDl~t~ 634 (842)
..|+|+|.-. -++.+-.-|+ ..++|........++...++. --.=+|++||.+|+..-.| |.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 3478888543 4666666565 467888877666555322221 1224699999999877554 78999999976
Q ss_pred CceeeEeecCccceEEEEEcCCCCcEEEEEeC-----------------CCcEEEEECCCCceeeEEeec-----CCeeE
Q 003177 635 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------------NSEIRYWSINNGSCAGVFKCQ-----SGATQ 692 (842)
Q Consensus 635 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs~-----------------Dg~I~vwDl~t~~~i~~~~~~-----~~i~~ 692 (842)
-..+-.+..|.-....+.|.+||..+++..+. .-++.+.|..+|..+.+.... -.|..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 66667788888888899999999876655430 013444454555554443332 34677
Q ss_pred EEEeCCCCEEEEEEcCCe-----EEEEECCCCeEEEEEeC-------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcC
Q 003177 693 MRFQPRLGRILAAAIENY-----ISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIG 758 (842)
Q Consensus 693 v~~sp~g~~l~~~s~dg~-----I~IwDl~t~~~~~~l~~-------h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~ 758 (842)
+...+++..++.+-..|- -.+=-...++++.-+.. ....|-+|+.+.+..+++..+ .+...+||..
T Consensus 231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence 788887666555444331 11111122333322221 223567888887777777777 5588999999
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 759 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 801 (842)
Q Consensus 759 s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwd 801 (842)
++ ..+.... -..++-+-+...-+++.+.+|.+.++.
T Consensus 311 tG---~vv~~a~----l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 311 TG---AVVSEAA----LPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CC---cEEeccc----ccccccceeccCceEEecCCceEEecc
Confidence 98 3332211 112222334444578888888888874
No 375
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.33 E-value=0.36 Score=58.52 Aligned_cols=276 Identities=13% Similarity=0.120 Sum_probs=151.3
Q ss_pred CCCeEEEEEcCCC------CEEEEEECCCcEEEEe-cCCCeEEEEe----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003177 560 TSKVESCHFSPDG------KLLATGGHDKKAVLWC-TESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRV 628 (842)
Q Consensus 560 ~~~V~sv~fSpdg------~~Lasgs~Dg~I~vwd-~~t~~~~~~l----~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 628 (842)
...|.|+.++|-| +++++|.++..+.+.- ..+...+... ..-...|.-..|-.|..+|+++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 4679999999732 2788998877665543 2333332221 122344666667667889999999999887
Q ss_pred EEcCCCCceeeEee---cCccceEEEEEcCCCCc------------------------------------------EEEE
Q 003177 629 WDTENPDYSLRTFT---GHSTTVMSLDFHPSKED------------------------------------------LLCS 663 (842)
Q Consensus 629 WDl~t~~~~i~~~~---~h~~~V~sl~fspdg~~------------------------------------------llas 663 (842)
|.++.........+ -...++.--.|+..+.. .+++
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~ 689 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLAS 689 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEE
Confidence 76543221111000 00111111112111111 1212
Q ss_pred EeCCCcEEEEECCCCc--eeeEEeecCCeeEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCeEEEEEeC
Q 003177 664 CDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAAIE--------------NYISILDVETQVCRLKLQG 727 (842)
Q Consensus 664 gs~Dg~I~vwDl~t~~--~i~~~~~~~~i~~v~~sp~g~~l~~~s~d--------------g~I~IwDl~t~~~~~~l~~ 727 (842)
+. .+.+++.-+..-. .++++........+++.+....+.+.+.. ..++++|-++.+.+...+-
T Consensus 690 ~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef 768 (1096)
T KOG1897|consen 690 AN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEF 768 (1096)
T ss_pred ec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccc
Confidence 22 3344444333211 22333445556677777744444444321 1366777766654443221
Q ss_pred -CCC---CEEEEEEcCC-CCEEEEEe-----------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003177 728 -HKN---QVHSVCWNTS-GEYLASVS-----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 791 (842)
Q Consensus 728 -h~~---~V~sl~~spd-g~~Lasgs-----------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sg 791 (842)
... .|.++.|..| +.++++|. .|.|.||.+......+.+++....+ .+.++..- +|+ +.+
T Consensus 769 ~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G-av~aL~~f-ngk--llA 844 (1096)
T KOG1897|consen 769 ERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG-AVYALVEF-NGK--LLA 844 (1096)
T ss_pred cccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc-ceeehhhh-CCe--EEE
Confidence 112 3445558777 67777664 2578888887754445555544333 33333222 233 444
Q ss_pred EcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 792 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 792 s~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
+-...|++|++.+.+.+ .-..|..++..+...-.+..++.|..=+.|.+
T Consensus 845 ~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 845 GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 55568999999998666 44578888999988888888988876565543
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.31 E-value=0.029 Score=66.83 Aligned_cols=186 Identities=12% Similarity=0.060 Sum_probs=112.1
Q ss_pred CccceEEEEEcCCCCcEEEEEe-----CC--CcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcC--------
Q 003177 644 HSTTVMSLDFHPSKEDLLCSCD-----NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-------- 708 (842)
Q Consensus 644 h~~~V~sl~fspdg~~llasgs-----~D--g~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~d-------- 708 (842)
....+.+.+++|+|..++++.. .| ..|.+++.. +.. ..+........-.|+|+++.+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEec
Confidence 3346789999999998877762 23 356666653 222 333333458889999998877776533
Q ss_pred ----CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEE---EcCCCCCceeE---EEeec-CCCceE
Q 003177 709 ----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVW---SIGSGSKGECI---HELSC-TGNKFH 777 (842)
Q Consensus 709 ----g~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~Iw---Dl~s~~~~~~i---~~~~~-~~~~I~ 777 (842)
+.+.+.+++.++... .....|..+.|+|||..|+...++.|+|- ....+. ..+ ..+.. ....+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccEEeecccCCccc
Confidence 233333444333322 23567999999999999998888888873 333332 111 11222 233468
Q ss_pred EEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEEcc--CCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 003177 778 SCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVK 839 (842)
Q Consensus 778 sv~~spdg~~L~sgs~dg--~I~Iwdl~~~~~~~~~~--h~~~V~sla~spdg~~Lasgs~DG~V~ 839 (842)
.+.|..++. |+++..++ .|+..++.......+.. ....+.+|+-+++ .|+....+|.+.
T Consensus 501 ~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 501 SLDWRTGDS-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cceEecCCE-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 899999998 44555544 35555555443222222 3567777877753 355556666554
No 377
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.30 E-value=0.19 Score=53.14 Aligned_cols=194 Identities=13% Similarity=0.082 Sum_probs=124.4
Q ss_pred eEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCc
Q 003177 593 TVKSTLEE-HTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 669 (842)
Q Consensus 593 ~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 669 (842)
+.+.++.. .....-.+.|..++.++-+.+.-| .|+.+|+.+++............-..++.. ++.++...-.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCe
Confidence 34455532 223455788877888888877766 799999998775333333333333445555 3456666777899
Q ss_pred EEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC--C---CCEEEEEEcCCCCEE
Q 003177 670 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--K---NQVHSVCWNTSGEYL 744 (842)
Q Consensus 670 I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h--~---~~V~sl~~spdg~~L 744 (842)
..+||..+.+.+..+.....-..++ .++..|+.......|+++|..+.+....+... . ..++.+.|- +|.+.
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 9999999999999998877666666 56778888888899999999887666655432 1 245567775 66666
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeec---------------CCCceEEEEEeCCCCEEEEEEcC
Q 003177 745 ASVS-DELVRVWSIGSGSKGECIHELSC---------------TGNKFHSCVFHPTFPSLLVIGCY 794 (842)
Q Consensus 745 asgs-Dg~I~IwDl~s~~~~~~i~~~~~---------------~~~~I~sv~~spdg~~L~sgs~d 794 (842)
|-.- ...|...|..++ .++..+.. .....+.++++|....|++.+..
T Consensus 189 ANVW~td~I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEETTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCeEEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 6555 778888999888 44443311 13467899999998887777653
No 378
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.25 E-value=0.06 Score=61.75 Aligned_cols=145 Identities=11% Similarity=0.103 Sum_probs=92.6
Q ss_pred CCeEEEEEcCC----CCEEEEEECCCcEEEEecC-----CCeEEEEec-cC--CCC--eEEEEEcCCCCEEEEEeCCCeE
Q 003177 561 SKVESCHFSPD----GKLLATGGHDKKAVLWCTE-----SFTVKSTLE-EH--TQW--ITDVRFSPSLSRLATSSADRTV 626 (842)
Q Consensus 561 ~~V~sv~fSpd----g~~Lasgs~Dg~I~vwd~~-----t~~~~~~l~-~h--~~~--I~~l~fspdg~~Latgs~Dg~I 626 (842)
..|..+.|.|- ..-|....+.+.|.||-+. ..+.+..-. .. .-+ -..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 34899999984 3245555677899999764 222221111 11 111 2367899998888877766665
Q ss_pred EEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc-----eeeEEeecCCeeEEEEeCCCCE
Q 003177 627 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----CAGVFKCQSGATQMRFQPRLGR 701 (842)
Q Consensus 627 ~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-----~i~~~~~~~~i~~v~~sp~g~~ 701 (842)
.++++......++.-....+.|.|.+|.+||.+++++.+..-.-++||-.... .-..|...+.|.++.-.-+ ..
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d-sq 215 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD-SQ 215 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc-ce
Confidence 67777655544554445678899999999999999888877788899865432 1224444555666655443 33
Q ss_pred EEEEE
Q 003177 702 ILAAA 706 (842)
Q Consensus 702 l~~~s 706 (842)
+++++
T Consensus 216 VAvaT 220 (671)
T PF15390_consen 216 VAVAT 220 (671)
T ss_pred EEEEe
Confidence 44443
No 379
>PRK10115 protease 2; Provisional
Probab=97.21 E-value=0.31 Score=59.50 Aligned_cols=199 Identities=10% Similarity=0.036 Sum_probs=107.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC-----CcEEE
Q 003177 603 QWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRY 672 (842)
Q Consensus 603 ~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~v 672 (842)
-.+..+.|+||+++|+.+... ..|++.|+.++......+.+ . -..++|.++++.++++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 446778999999988876442 36889999876532222222 1 15699999998888776533 36888
Q ss_pred EECCCC--ceeeEEeecCC-ee-EEEEeCCCCEEEEEEc---CCeEEEEECC--CCeEEEEEeCCCCCEEEEEEcCCCCE
Q 003177 673 WSINNG--SCAGVFKCQSG-AT-QMRFQPRLGRILAAAI---ENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEY 743 (842)
Q Consensus 673 wDl~t~--~~i~~~~~~~~-i~-~v~~sp~g~~l~~~s~---dg~I~IwDl~--t~~~~~~l~~h~~~V~sl~~spdg~~ 743 (842)
+++.++ +....+..... .. .+..+.++.+++..+. ++.+.+|+.. ++.....+.........+. ...+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 899887 44444443222 22 2333447777665554 3578888853 3332222222222222222 223333
Q ss_pred EEEEe-C-C--eEEEEEcCCCCCceeEEEeecC--CCceEEEEEeCCCCEEEEEE-cCC--eEEEEECCCCeEEEE
Q 003177 744 LASVS-D-E--LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIG-CYE--TLELWNMTENKTLTL 810 (842)
Q Consensus 744 Lasgs-D-g--~I~IwDl~s~~~~~~i~~~~~~--~~~I~sv~~spdg~~L~sgs-~dg--~I~Iwdl~~~~~~~~ 810 (842)
++... + . .|...++.... . ...+..+ ...+..+.+. +++|+... .++ .|++++..++....+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~--~-~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQ--Q-WEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcc--c-CeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 33333 2 2 34444444211 1 1222223 3467777777 33455444 455 566667655544443
No 380
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.20 E-value=0.07 Score=54.56 Aligned_cols=207 Identities=12% Similarity=0.101 Sum_probs=111.9
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcC-CCC-cEEEEEeCCCcEEEEECCC--CceeeEEe-----
Q 003177 615 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKE-DLLCSCDNNSEIRYWSINN--GSCAGVFK----- 685 (842)
Q Consensus 615 ~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fsp-dg~-~llasgs~Dg~I~vwDl~t--~~~i~~~~----- 685 (842)
.++.+--..|.|.-||+.........+.+.. +.++.+-- ++. .+.+.|+..-.|.-||... .+..+++.
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 3444444567777788887553333333321 33333322 222 3444555555566677432 22222211
Q ss_pred -ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC--------CCCEEEEEEcCCCCEEEEEe--CCeEEE
Q 003177 686 -CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--------KNQVHSVCWNTSGEYLASVS--DELVRV 754 (842)
Q Consensus 686 -~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h--------~~~V~sl~~spdg~~Lasgs--Dg~I~I 754 (842)
.....+.-..+|+|++ +.|.....-.++....+....-+.+| -.--+.++|+.+.+.+.... +-+|.-
T Consensus 106 ~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred HHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 1234566678899888 44433111112222223322222222 22335789998887666555 667877
Q ss_pred EE--cCCCCCc--eeEEEeec----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeC
Q 003177 755 WS--IGSGSKG--ECIHELSC----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST 824 (842)
Q Consensus 755 wD--l~s~~~~--~~i~~~~~----~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~sp 824 (842)
|| ..++... +.+..++. ..-....+++..+|...+++-..++|..+|..+|+++ .+.-....|++++|--
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 88 5554321 23333322 1112234556777876666667779999999999988 5555678899999964
No 381
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.18 E-value=0.021 Score=69.17 Aligned_cols=139 Identities=12% Similarity=0.095 Sum_probs=98.9
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCC-------CCEEEEEEcCCeEEEEECCCC--eEEEE-E--eC
Q 003177 660 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-------LGRILAAAIENYISILDVETQ--VCRLK-L--QG 727 (842)
Q Consensus 660 llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~-------g~~l~~~s~dg~I~IwDl~t~--~~~~~-l--~~ 727 (842)
+|........|+-.|++.|+.+..+..+..+.-..+.|+ ....++|-.++.|..||.+-. +++.. . ..
T Consensus 496 il~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 496 ILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred EeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc
Confidence 343334568899999999999999998776655666664 334688889999999999853 23311 1 12
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 728 HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 802 (842)
Q Consensus 728 h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl 802 (842)
......|++-+.+|.+++...+|.||+||-- +. ..-..+.+.+.+|..|..+.||++|++.+. ..|.+++.
T Consensus 576 ~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~--~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GK--RAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCceEEEEeCCCcEEeeccc-ch--hhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 4456788888877765554449999999943 32 344456677899999999999998776654 46666664
No 382
>PRK13684 Ycf48-like protein; Provisional
Probab=97.14 E-value=0.61 Score=51.85 Aligned_cols=270 Identities=7% Similarity=-0.014 Sum_probs=132.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEec----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 635 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~----~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~ 635 (842)
...+++|+|..+..-+|+|. +|.|..= .+.++.-.... .....+.++.|.++ ..+++ +..+.| |..+++.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i--~~S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLL--LHTTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceE--EEECCCC
Confidence 55799999986666666664 4543321 12232222211 12334778888654 34444 445543 3333332
Q ss_pred ceeeEee---cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe--ecCCeeEEEEeCCCCEEEEEEcCCe
Q 003177 636 YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENY 710 (842)
Q Consensus 636 ~~i~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~~v~~sp~g~~l~~~s~dg~ 710 (842)
....... ........+..... ..+++. +..|.|..= ...|+.=..+. ....+..+.+.+++. +++.+..|.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~-g~~G~i~~S-~DgG~tW~~~~~~~~g~~~~i~~~~~g~-~v~~g~~G~ 194 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGP-GTAEMA-TNVGAIYRT-TDGGKNWEALVEDAAGVVRNLRRSPDGK-YVAVSSRGN 194 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECC-Ccceee-eccceEEEE-CCCCCCceeCcCCCcceEEEEEECCCCe-EEEEeCCce
Confidence 2122211 01111122222222 223323 334433221 11222211111 134578888888754 455555665
Q ss_pred EEEE-ECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCEE
Q 003177 711 ISIL-DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSL 788 (842)
Q Consensus 711 I~Iw-Dl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv~~spdg~~L 788 (842)
+..- |-....-......-...++++.+.+++..++++..|.+++=+...+.....+... ......+..+.+.+++. +
T Consensus 195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~ 273 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-I 273 (334)
T ss_pred EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-E
Confidence 5532 2221111112223456789999999999888887886653233443221211111 11224577888998776 5
Q ss_pred EEEEcCCeEEEEECCCCeEE-EE---ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 789 LVIGCYETLELWNMTENKTL-TL---SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 789 ~sgs~dg~I~Iwdl~~~~~~-~~---~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++++.+|.|. .....++.- .. ..-......+.|..+++.++ .+..|.|.-|+
T Consensus 274 ~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 274 WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 6666677555 344544433 22 12223577888877766655 45678776653
No 383
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.11 E-value=0.025 Score=67.38 Aligned_cols=229 Identities=11% Similarity=0.056 Sum_probs=118.9
Q ss_pred CCCEEEEEECC------CcEEEEecCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEcCCCCce
Q 003177 571 DGKLLATGGHD------KKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS 637 (842)
Q Consensus 571 dg~~Lasgs~D------g~I~vwd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~D------g~I~IWDl~t~~~~ 637 (842)
.+.++++|+.+ ..|..||..+..-.....- +...-.++++. ++...++|+.| .++..||..++..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W- 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW- 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce-
Confidence 34566666665 3677888777643322211 22223344444 45788888888 3677888877653
Q ss_pred eeEeecCccceEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCceeeEEeecCCeeEEEE-eCCCCEEEEEEcCC--
Q 003177 638 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGATQMRF-QPRLGRILAAAIEN-- 709 (842)
Q Consensus 638 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg-----~I~vwDl~t~~~i~~~~~~~~i~~v~~-sp~g~~l~~~s~dg-- 709 (842)
.....-...-..+....-++.+.++|+.|| +|-.||..+.+....-........... .-++..+++|+.++
T Consensus 362 -~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 362 -TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred -eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 111111111112222222356788888886 477788876654333322222222222 23455666676543
Q ss_pred ----eEEEEECCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCceeEEEeecCCCceE
Q 003177 710 ----YISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKFH 777 (842)
Q Consensus 710 ----~I~IwDl~t~~~~~--~l~~h~~~V~sl~~spdg~~Lasgs-Dg-----~I~IwDl~s~~~~~~i~~~~~~~~~I~ 777 (842)
.+..||..+..-.. .+..-.... .++. -++.+++.|+ |+ +|..||..+..- ..+ ..-.....
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W-~~v---~~m~~~rs 514 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQW-TMV---APMTSPRS 514 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCce-eEc---ccCccccc
Confidence 57788888764332 222111111 2333 2566666666 55 478888877521 122 11122222
Q ss_pred EEE-EeCCCCEEEEEEcCC-----eEEEEECCCCeEE
Q 003177 778 SCV-FHPTFPSLLVIGCYE-----TLELWNMTENKTL 808 (842)
Q Consensus 778 sv~-~spdg~~L~sgs~dg-----~I~Iwdl~~~~~~ 808 (842)
.+. ..-++...++|+.|+ +|..||..+.+..
T Consensus 515 ~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 515 AVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred cccEEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 222 223445566677666 6888888777655
No 384
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.05 E-value=0.023 Score=67.62 Aligned_cols=207 Identities=10% Similarity=0.013 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCceeeEEeecCCeeEEEE-eC
Q 003177 625 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSGATQMRF-QP 697 (842)
Q Consensus 625 ~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D------g~I~vwDl~t~~~i~~~~~~~~i~~v~~-sp 697 (842)
.|..||..++......-........++++.. +.++++|+.| .++..||..+.+-...-.....-..... .-
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL 379 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence 5777777765332111111223344555553 3577788888 3678888887764432222222112222 22
Q ss_pred CCCEEEEEEcCC-----eEEEEECCCCeEEEEEeCCCCCEEEEE-EcCCCCEEEEEe-CC------eEEEEEcCCCCCce
Q 003177 698 RLGRILAAAIEN-----YISILDVETQVCRLKLQGHKNQVHSVC-WNTSGEYLASVS-DE------LVRVWSIGSGSKGE 764 (842)
Q Consensus 698 ~g~~l~~~s~dg-----~I~IwDl~t~~~~~~l~~h~~~V~sl~-~spdg~~Lasgs-Dg------~I~IwDl~s~~~~~ 764 (842)
+|..+++|+.|| .|..||.++.+-...-. ......+.. ..-+|.+.++|+ ++ .|..||..+.. ..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~-W~ 457 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT-WT 457 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc-ee
Confidence 456677777775 57888887653222111 111222221 123677666666 43 57888877752 11
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEEccCCCCeeEEEE-eCCCCEEEEEeCCCc
Q 003177 765 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDKLVSSLAA-STVNGMVASASHDKC 837 (842)
Q Consensus 765 ~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg-----~I~Iwdl~~~~~~~~~~h~~~V~sla~-spdg~~Lasgs~DG~ 837 (842)
.+..+. ......-+..-++...++||.++ +|..||..+.+...+..-......+.. .-++.+.++|+.||.
T Consensus 458 ~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 458 LIAPMN--TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred ecCCcc--cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCc
Confidence 111111 11111112333455666666665 588999998887755433222222221 225677888888874
No 385
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.04 E-value=0.15 Score=54.28 Aligned_cols=189 Identities=10% Similarity=0.023 Sum_probs=109.2
Q ss_pred ceEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEE-CCCCeE-E
Q 003177 647 TVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD-VETQVC-R 722 (842)
Q Consensus 647 ~V~sl~fspdg~~llasgs~--Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwD-l~t~~~-~ 722 (842)
.+.+.++++++..+.+.... ...|+++.. +...........+..-.|++++...++...+....++. ...+.. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 68899999999877776633 344555543 33333333445788889999966666666566656653 333322 1
Q ss_pred EEEeC--CCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCc------eeEEEeecCCCceEEEEEeCCCCEEEE
Q 003177 723 LKLQG--HKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLV 790 (842)
Q Consensus 723 ~~l~~--h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~------~~i~~~~~~~~~I~sv~~spdg~~L~s 790 (842)
..+.. -...|+.+.++|||..++... ++.|.|--+...... ..+.........+..+.|.+++.+++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 12221 122899999999999887766 667877766533222 122222233568899999999987776
Q ss_pred EEcCCe-EEE-EECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 003177 791 IGCYET-LEL-WNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV 838 (842)
Q Consensus 791 gs~dg~-I~I-wdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V 838 (842)
+...+. +.. +....+....+..-...+..++...+...++.. +++.|
T Consensus 183 ~~~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t-~~~~~ 231 (253)
T PF10647_consen 183 GRSAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVT-DDGGV 231 (253)
T ss_pred eCCCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEE-CCCcE
Confidence 665542 333 445444433332333333344444444444443 34433
No 386
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.03 E-value=0.93 Score=51.63 Aligned_cols=260 Identities=13% Similarity=0.146 Sum_probs=144.0
Q ss_pred CCEEEEEECCCcEEEEecCCCe-----EEEEeccCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEcCCCC------
Q 003177 572 GKLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPD------ 635 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~-----~~~~l~~h~~~I~~l~fsp-----dg~~Latgs~Dg~I~IWDl~t~~------ 635 (842)
...|++|+.+|.++||+..... .+.. ..-..+|..|..-. +...||+ =.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 4589999999999999875432 1111 23456787776532 2234444 456778888873211
Q ss_pred --ceeeEeecCc--cceEEEEEcC----CCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEc
Q 003177 636 --YSLRTFTGHS--TTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 707 (842)
Q Consensus 636 --~~i~~~~~h~--~~V~sl~fsp----dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~ 707 (842)
..+.....|. .....+++-| .+..+++.=+.||.+.+|+-+.......+..---...++|.+....|++++.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 2233333343 2233344333 2357888999999999999876544444433233456788888889999999
Q ss_pred CCeEEEEECCCC--------------------e---EEEEEeCCCCCEEEE---EEcCCCCEEEEEeCCeEEEEEcCCCC
Q 003177 708 ENYISILDVETQ--------------------V---CRLKLQGHKNQVHSV---CWNTSGEYLASVSDELVRVWSIGSGS 761 (842)
Q Consensus 708 dg~I~IwDl~t~--------------------~---~~~~l~~h~~~V~sl---~~spdg~~LasgsDg~I~IwDl~s~~ 761 (842)
+..|..|....- + +-.++. -...+..+ .++.....+++-++..+.+.+-. |
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G- 271 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G- 271 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-
Confidence 888888854210 0 111111 12223333 33334445666666677777653 2
Q ss_pred CceeEEEeecCCCceEEEEEeC----CC---CEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEE---eCCCCEEEE
Q 003177 762 KGECIHELSCTGNKFHSCVFHP----TF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA---STVNGMVAS 831 (842)
Q Consensus 762 ~~~~i~~~~~~~~~I~sv~~sp----dg---~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~---spdg~~Las 831 (842)
.....+.+.. .+...+.|.. ++ ..+++++.++.+.||.=.+ ++.-........++.. ..-...|++
T Consensus 272 ~l~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~PVal~v~~~~~~~G~IV~ 347 (418)
T PF14727_consen 272 SLRFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHVPVALSVANFNGLKGLIVS 347 (418)
T ss_pred eEEEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCCCEEEEecccCCCCceEEE
Confidence 2233333322 2222222221 22 2488999999999997333 2211111222223332 223457888
Q ss_pred EeCCCcEEE
Q 003177 832 ASHDKCVKI 840 (842)
Q Consensus 832 gs~DG~V~I 840 (842)
-+.+|.|.+
T Consensus 348 Ls~~G~L~v 356 (418)
T PF14727_consen 348 LSDEGQLSV 356 (418)
T ss_pred EcCCCcEEE
Confidence 888898865
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.018 Score=64.90 Aligned_cols=134 Identities=12% Similarity=0.089 Sum_probs=94.8
Q ss_pred CCCEEE-EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCC--------EEEEEeCCeEEEEEcCCCCCceeEEE
Q 003177 698 RLGRIL-AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE--------YLASVSDELVRVWSIGSGSKGECIHE 768 (842)
Q Consensus 698 ~g~~l~-~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~--------~LasgsDg~I~IwDl~s~~~~~~i~~ 768 (842)
+.+.++ .+.....|+-.|++.|+.+..+.-+.. |.-+.+.|+.+ .|+.-++..|.-||.+-.... .+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeee
Confidence 334444 344557899999999999999887766 77778878654 455556889999998854321 2222
Q ss_pred eecC----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-EEEccCCCCeeEEEEeCCCCEEEEEeC
Q 003177 769 LSCT----GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-LTLSAHDKLVSSLAASTVNGMVASASH 834 (842)
Q Consensus 769 ~~~~----~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~-~~~~~h~~~V~sla~spdg~~Lasgs~ 834 (842)
...+ ...+.|++-..+| +|++|+.+|.|++||-..... ..+++...+|..|..+.||++|+..+.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence 2222 3456666666665 699999999999999733222 267788899999999999998776554
No 388
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.92 E-value=0.0023 Score=44.49 Aligned_cols=37 Identities=38% Similarity=0.592 Sum_probs=33.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003177 552 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 588 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd 588 (842)
.+..+..|...|.++.|++++.++++++.|+.|++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778999999999999999999999999999996
No 389
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.89 E-value=0.19 Score=56.98 Aligned_cols=88 Identities=23% Similarity=0.350 Sum_probs=55.5
Q ss_pred EEEEcCCCCEEEEEECCCcEEE---EecC-----CCeEEEEec---cCC--CCeEEEEEcC-----------CCCEEEEE
Q 003177 565 SCHFSPDGKLLATGGHDKKAVL---WCTE-----SFTVKSTLE---EHT--QWITDVRFSP-----------SLSRLATS 620 (842)
Q Consensus 565 sv~fSpdg~~Lasgs~Dg~I~v---wd~~-----t~~~~~~l~---~h~--~~I~~l~fsp-----------dg~~Latg 620 (842)
+++.+|++++||.+..+..|.+ |+.. ......... .+. ..|+++.+.| |...|++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999987776665 5431 112221111 121 5677776643 46789999
Q ss_pred eCCCeEEEEEcCCCCceeeEeecCccceEEEEEc
Q 003177 621 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 654 (842)
Q Consensus 621 s~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fs 654 (842)
..+|.|++|... +.. +..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~-G~L-L~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN-GVL-LLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc-chH-HHHHhcCccceEEEEec
Confidence 999999999874 332 33333366667666654
No 390
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=96.89 E-value=0.0014 Score=46.25 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHhcCCC
Q 003177 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39 (842)
Q Consensus 9 ~~~L~~yiydyl~k~~~~~~A~~~~~e~~~~ 39 (842)
+..|+..|++||.+.|+.++|++|.+|.++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 5679999999999999999999999998764
No 391
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.87 E-value=0.84 Score=49.79 Aligned_cols=268 Identities=9% Similarity=0.074 Sum_probs=122.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEe--ccC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENP 634 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l--~~h---~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~ 634 (842)
...+.+|.|..+..-+++|. .+.| +-..+.|+.-... ... .....+|.|..+ ..+++ +..+. .+...+.+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~-ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGL-LLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTE-EEEESSTT
T ss_pred CCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCce-EEEecCCC
Confidence 44799999996565566654 4543 2222223221111 111 223667788643 34444 44553 33333333
Q ss_pred CceeeEee---cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEE--eecCCeeEEEEeCCCCEEEEEEcCC
Q 003177 635 DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KCQSGATQMRFQPRLGRILAAAIEN 709 (842)
Q Consensus 635 ~~~i~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~--~~~~~i~~v~~sp~g~~l~~~s~dg 709 (842)
. ....+. .-......+....++ ..++. +..|.|+. ..+.|+.=..+ .....+..+..++++.+++++....
T Consensus 91 ~-tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~-~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 91 K-TWERVPLSSKLPGSPFGITALGDG-SAELA-GDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp S-S-EE----TT-SS-EEEEEEEETT-EEEEE-ETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred C-CcEEeecCCCCCCCeeEEEEcCCC-cEEEE-cCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence 2 222221 112233334433333 23323 33444332 22223221111 2235577888889988777776655
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEE----EeecCCCceEEEEEeCCC
Q 003177 710 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIH----ELSCTGNKFHSCVFHPTF 785 (842)
Q Consensus 710 ~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~----~~~~~~~~I~sv~~spdg 785 (842)
.+.-||.-...-...-......|.++.|.|++.+.+++..|.|++=+..... +... .+......+..++|.+++
T Consensus 167 ~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~--~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 167 FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG--ETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE--EEE---B-TTSS--S-EEEEEESSSS
T ss_pred EEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc--cccccccCCcccCceeeEEEEecCCC
Confidence 6667886543222222235678999999999998887778888887722210 1111 122234558899999887
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEc----cCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 786 PSLLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 786 ~~L~sgs~dg~I~Iwdl~~~~~~~~~----~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
. +.+++..|.| +...+.|+.-... .-...+..|.|..+.+-+| .+.||.|--|
T Consensus 245 ~-~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 245 E-IWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp --EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred C-EEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 6 5555556644 4455566543222 3345678888876655555 4578877655
No 392
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.86 E-value=0.0031 Score=43.73 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=34.4
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 592 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 592 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
++....+..|...|.++.|.+++.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 393
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.85 E-value=0.86 Score=50.61 Aligned_cols=232 Identities=14% Similarity=0.159 Sum_probs=119.0
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEecCCCeE---EEEe----ccCCCCeEEEEEcCC---CCEEEEEeC-C--------
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLATSSA-D-------- 623 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~---~~~l----~~h~~~I~~l~fspd---g~~Latgs~-D-------- 623 (842)
-+.|+|.|||++|++ ...|.|++++ ..+.. +..+ .........++|+|+ ..+|++... .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999977665 5699999999 44443 2232 234456899999994 334433332 1
Q ss_pred CeEEEEEcCCCC-------ceeeEeec---CccceEEEEEcCCCCcEEEEEeCC------------CcEEEEECCCCce-
Q 003177 624 RTVRVWDTENPD-------YSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNN------------SEIRYWSINNGSC- 680 (842)
Q Consensus 624 g~I~IWDl~t~~-------~~i~~~~~---h~~~V~sl~fspdg~~llasgs~D------------g~I~vwDl~t~~~- 680 (842)
..|.-|.+.... ..+..+.. .......|.|.|+|..++.+|+.. |.|.-.+.. ++.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCC
Confidence 245555554431 11112222 223456799999985444444321 233333432 110
Q ss_pred ------------eeEEe-ecCCeeEEEEeCCCCEEEEEEc--CC--eEEEEECC--------C------C----------
Q 003177 681 ------------AGVFK-CQSGATQMRFQPRLGRILAAAI--EN--YISILDVE--------T------Q---------- 719 (842)
Q Consensus 681 ------------i~~~~-~~~~i~~v~~sp~g~~l~~~s~--dg--~I~IwDl~--------t------~---------- 719 (842)
...+. .......++|+|..+.|+++.. ++ .|.+..-. . +
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 11111 1223567899998555655543 22 23332110 0 0
Q ss_pred ---eEEEEEeCCCCCEEEEEEcC-------CCCEEEEEe-CCeEEEEEcCCCCCceeEEE-eecCCCceEEEEEeCCCCE
Q 003177 720 ---VCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPS 787 (842)
Q Consensus 720 ---~~~~~l~~h~~~V~sl~~sp-------dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~-~~~~~~~I~sv~~spdg~~ 787 (842)
.++..+..| ..+..+.|.. .|.++++.- .+.|....+........... +......+..+++.|||..
T Consensus 241 ~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 241 GFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp TS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred CcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence 133334433 5566777764 344565555 66888888865422122222 2334457999999999987
Q ss_pred EEEEEcCCeEE
Q 003177 788 LLVIGCYETLE 798 (842)
Q Consensus 788 L~sgs~dg~I~ 798 (842)
+++...+|.|+
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 77777677764
No 394
>PHA02713 hypothetical protein; Provisional
Probab=96.85 E-value=0.066 Score=63.79 Aligned_cols=217 Identities=7% Similarity=-0.002 Sum_probs=105.2
Q ss_pred cEEEEecCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEcCCCCcee-eEeecCccceEEEEE
Q 003177 583 KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYSL-RTFTGHSTTVMSLDF 653 (842)
Q Consensus 583 ~I~vwd~~t~~~~~--~l~~h~~~I~~l~fspdg~~Latgs~D------g~I~IWDl~t~~~~i-~~~~~h~~~V~sl~f 653 (842)
.+..||..+.+-.. .+...... .+++. -++..++.|+.+ ..+..||..+..... .......... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE
Confidence 56778877654322 12111111 12222 256677777753 357788887654311 1111111111 2222
Q ss_pred cCCCCcEEEEEeCCC-----cEEEEECCCCceeeEEeecCCeeE-EEEeCCCCEEEEEEcC-------------------
Q 003177 654 HPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIE------------------- 708 (842)
Q Consensus 654 spdg~~llasgs~Dg-----~I~vwDl~t~~~i~~~~~~~~i~~-v~~sp~g~~l~~~s~d------------------- 708 (842)
. ++.+.+.|+.++ .+..||..+.+-...-........ ....-++..+++|+.+
T Consensus 350 ~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 I--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred E--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 2 245666777654 478899887653332221111111 1112245566666644
Q ss_pred ----CeEEEEECCCCeEE--EEEeCCCCCEEEEEEcCCCCEEEEEe-C------CeEEEEEcCCCCCceeEEEeecCCCc
Q 003177 709 ----NYISILDVETQVCR--LKLQGHKNQVHSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECIHELSCTGNK 775 (842)
Q Consensus 709 ----g~I~IwDl~t~~~~--~~l~~h~~~V~sl~~spdg~~Lasgs-D------g~I~IwDl~s~~~~~~i~~~~~~~~~ 775 (842)
..+..||.++.+-. ..+...... .+++. -++++.+.|+ + ..|..||..+......+..+......
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCccccc-CcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 24778888765432 222111111 12222 2566556555 3 24678888762122333333322222
Q ss_pred eEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEE
Q 003177 776 FHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTL 808 (842)
Q Consensus 776 I~sv~~spdg~~L~sgs~dg--~I~Iwdl~~~~~~ 808 (842)
...+ .-++...++|+.++ .+..||..+.+..
T Consensus 506 ~~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 506 LHTI--LHDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred ceeE--EECCEEEEEeeecceeehhhcCccccccc
Confidence 2222 23666777788787 7889998888765
No 395
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.081 Score=55.62 Aligned_cols=170 Identities=14% Similarity=0.139 Sum_probs=114.3
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEE-EEcCC-eEEEEECCCCeEEEEEeCCCCC
Q 003177 654 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA-AAIEN-YISILDVETQVCRLKLQGHKNQ 731 (842)
Q Consensus 654 spdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~-~s~dg-~I~IwDl~t~~~~~~l~~h~~~ 731 (842)
.+++.+.+++.+.+ |+++...........++++|....-++ +-.-| ...+||........++...++.
T Consensus 44 ~~dgs~g~a~~~ea----------Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R 113 (366)
T COG3490 44 ARDGSFGAATLSEA----------GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR 113 (366)
T ss_pred ccCCceeEEEEccC----------CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc
Confidence 34555555554444 566666666677788889987655443 44444 5678998887655544332221
Q ss_pred --EEEEEEcCCCCEEEEEe------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---------
Q 003177 732 --VHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--------- 794 (842)
Q Consensus 732 --V~sl~~spdg~~Lasgs------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d--------- 794 (842)
.-.-+|++||.+|+... -|.|-|||.+.+ ...+-++..++-....+.|.+||+.++++...
T Consensus 114 HfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR 191 (366)
T COG3490 114 HFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGR 191 (366)
T ss_pred eeecccccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCc
Confidence 12347999999999875 248999999854 36777888888889999999999988877541
Q ss_pred ---------CeEEEEECCCCeEE---EEc--cCCCCeeEEEEeCCCCEEEEEeCC
Q 003177 795 ---------ETLELWNMTENKTL---TLS--AHDKLVSSLAASTVNGMVASASHD 835 (842)
Q Consensus 795 ---------g~I~Iwdl~~~~~~---~~~--~h~~~V~sla~spdg~~Lasgs~D 835 (842)
-++.+.|..+|.++ ++. -+.-.|..++..+||..++.|-..
T Consensus 192 ~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~ 246 (366)
T COG3490 192 TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYR 246 (366)
T ss_pred cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence 14555665666655 232 345678889998898877766443
No 396
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80 E-value=0.33 Score=51.67 Aligned_cols=191 Identities=13% Similarity=0.150 Sum_probs=119.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003177 556 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 634 (842)
Q Consensus 556 l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~ 634 (842)
+.|-+..|.++.|+|+.+.|++......-.||=...|+.++++.- .-.....|.|..++.+.++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 345455599999999999988888888888887788999888742 1233556788888888888888999999888755
Q ss_pred Cceee---------EeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe---e--------cCCeeEEE
Q 003177 635 DYSLR---------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---C--------QSGATQMR 694 (842)
Q Consensus 635 ~~~i~---------~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---~--------~~~i~~v~ 694 (842)
...+. ...........++|.|....++ .+-+..-+.||.+.......... . -..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 32111 1112245678899999987666 44555566666655332111000 0 13467788
Q ss_pred EeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCC---------CEEEEEEcCCCCEEEEEe
Q 003177 695 FQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKN---------QVHSVCWNTSGEYLASVS 748 (842)
Q Consensus 695 ~sp~g~~l~~~s~-dg~I~IwDl~t~~~~~~l~~h~~---------~V~sl~~spdg~~Lasgs 748 (842)
|.+..+.+++-+. ++.+.-.|.... ++..+.-+.+ ....|+.+++|.+.+++.
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE 302 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE 302 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence 8876666666554 566666776644 2332221111 224566666666555444
No 397
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.79 E-value=0.8 Score=48.58 Aligned_cols=179 Identities=9% Similarity=0.019 Sum_probs=107.0
Q ss_pred cceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCceeeEEeecCCee--EEEEeCCCCEEEEEE-cCCeEEEEECCCCe
Q 003177 646 TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGAT--QMRFQPRLGRILAAA-IENYISILDVETQV 720 (842)
Q Consensus 646 ~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~--~v~~sp~g~~l~~~s-~dg~I~IwDl~t~~ 720 (842)
.....+.|..++ .++-+.+.-| .|+.+|+.+++.......+.... .++.. ++.++.-+ .++...+||..+.+
T Consensus 45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 345578886554 4666766555 79999999999888777665543 34444 34555555 47899999999998
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC---CceEEEEEeCCCCEEEEEE-cCC
Q 003177 721 CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---NKFHSCVFHPTFPSLLVIG-CYE 795 (842)
Q Consensus 721 ~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~---~~I~sv~~spdg~~L~sgs-~dg 795 (842)
.+.++. ..+.=..++ .|+..|+.+. ...|+++|..+......+... ..+ ..++.+.|. +|. |++-- ...
T Consensus 122 ~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNELE~i-~G~-IyANVW~td 195 (264)
T PF05096_consen 122 KIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRPVSNLNELEYI-NGK-IYANVWQTD 195 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE---EEEEEEE-TTE-EEEEETTSS
T ss_pred EEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-ECCEECCCcEeEEEE-cCE-EEEEeCCCC
Confidence 888876 345556777 3555555544 778999998776432222222 122 234556665 443 44333 345
Q ss_pred eEEEEECCCCeEEEEc-------------cC---CCCeeEEEEeCCCCEEEEEe
Q 003177 796 TLELWNMTENKTLTLS-------------AH---DKLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 796 ~I~Iwdl~~~~~~~~~-------------~h---~~~V~sla~spdg~~Lasgs 833 (842)
.|...|..+|+++... .+ .+..+.||+.|....|...+
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 8888999999887321 01 35689999998776544433
No 398
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.76 E-value=1.4 Score=49.60 Aligned_cols=193 Identities=10% Similarity=0.070 Sum_probs=107.2
Q ss_pred CCCEEEEEECCCcEEEEecCCCeEEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCc-cc
Q 003177 571 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TT 647 (842)
Q Consensus 571 dg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h--~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~-~~ 647 (842)
++ .++++..+|.|.-+|.++++.+.....- ...+.+-.+..+|+ |+.++.++.++.+|.+++.. +..+.... ..
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~~~ 144 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-VWSRNVGGSPY 144 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE-EEEEecCCCeE
Confidence 45 4455578888999999888866433222 12333333333665 77888899899999876664 33333333 11
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCC-eeEEEEe--CCCCEEEEEEc--CCeEEEEECCCCeEE
Q 003177 648 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQ--PRLGRILAAAI--ENYISILDVETQVCR 722 (842)
Q Consensus 648 V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-i~~v~~s--p~g~~l~~~s~--dg~I~IwDl~t~~~~ 722 (842)
+..-.+..++ .++.++.++.+...|..+++....+..... -..+... .....++.+.. ++.+.-+|.+++...
T Consensus 145 ~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 145 YASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence 2222222232 344444789999999999988877665332 0111111 23345566655 667888888888777
Q ss_pred EEEeCCC----CCE--E-EE---EEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeec
Q 003177 723 LKLQGHK----NQV--H-SV---CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC 771 (842)
Q Consensus 723 ~~l~~h~----~~V--~-sl---~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~ 771 (842)
...+.+. ..+ . .+ ...-++..++...++.+...|..++ +.+-.+..
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G---~~~W~~~~ 278 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTG---ELIWSFPA 278 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCC---ceEEEEec
Confidence 6643211 111 0 00 1111233333333777888888887 44444443
No 399
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0056 Score=70.12 Aligned_cols=92 Identities=17% Similarity=0.240 Sum_probs=76.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceE-EEEEcCCCCcEEEEEeCCCcEEEEECCCCcee
Q 003177 603 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 681 (842)
Q Consensus 603 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~-sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i 681 (842)
..|.-+.|+|.-.+||++..+|.|.++.+.- ..+.++.-|...++ +++|.|||+ +++.|-.||+|++.|++++..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~--qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW--QRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc--ceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCce
Confidence 4578899999999999999999999998883 33666666777777 999999976 8889999999999999999888
Q ss_pred eE--EeecCCeeEEEEeC
Q 003177 682 GV--FKCQSGATQMRFQP 697 (842)
Q Consensus 682 ~~--~~~~~~i~~v~~sp 697 (842)
.. +.....|.++.|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 77 45567788888864
No 400
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.75 E-value=1.5 Score=49.81 Aligned_cols=147 Identities=11% Similarity=0.068 Sum_probs=82.5
Q ss_pred eEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCce--eEEE
Q 003177 691 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE--CIHE 768 (842)
Q Consensus 691 ~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~--~i~~ 768 (842)
..+..++++..++++.....++-||-....-...-......+.++.|.+++.+++++.+|.+.+ ....+.... .+..
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~ 320 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEE 320 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceee
Confidence 3445566655554444333333344322110111122345688999999999998888776544 333332111 2222
Q ss_pred eec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE----ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 769 LSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 769 ~~~--~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~----~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
... ....+..+.|.+++. +++++..|.|.... ..++.-.. ..-...+..+.|.++++.+++ +.+|.|.-|
T Consensus 321 ~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 321 ADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred cccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 221 224588889988776 66777777666554 44544322 233456889999777666655 577877655
No 401
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.74 E-value=0.049 Score=49.74 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=67.2
Q ss_pred eEEEEEcC---CC-CEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003177 563 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 638 (842)
Q Consensus 563 V~sv~fSp---dg-~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i 638 (842)
|+++++.. || +.|++|+.|..|+||+-+ +.+..+..+ +.|++++-... ..++.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl--- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL--- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCccee---
Confidence 56666654 43 479999999999999844 566667544 55777777665 679999999999999865422
Q ss_pred eEeecCccceEEEEEc---CCCCcEEEEEeCCCcEE
Q 003177 639 RTFTGHSTTVMSLDFH---PSKEDLLCSCDNNSEIR 671 (842)
Q Consensus 639 ~~~~~h~~~V~sl~fs---pdg~~llasgs~Dg~I~ 671 (842)
...+ ....+.++++. .+|..-|++|-.+|.|-
T Consensus 75 WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 22335665544 34444566777777664
No 402
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.034 Score=62.75 Aligned_cols=142 Identities=16% Similarity=0.180 Sum_probs=101.6
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCE-------EEEEEcCCeEEEEECCCC-e-EEEEEe
Q 003177 656 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR-------ILAAAIENYISILDVETQ-V-CRLKLQ 726 (842)
Q Consensus 656 dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~-------l~~~s~dg~I~IwDl~t~-~-~~~~l~ 726 (842)
+.+.++.++.....|+-.|++.|+.+.....+..|.-+.+.|+... -++|-.++.|.-||.+-. . .+....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 3455566677777899999999999999999888999999887543 466778899999998843 2 222222
Q ss_pred CC----CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 727 GH----KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 801 (842)
Q Consensus 727 ~h----~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwd 801 (842)
+| .....|++-..+| +|++|+ +|.|++||--.. ..-..+.+.+.+|..+..+.+|++|++. ++..|.+.+
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~---~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~ 498 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGR---RAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLID 498 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehhhhh---hhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEE
Confidence 22 3355666666555 455566 999999997322 3344577788999999999999976654 455666665
Q ss_pred C
Q 003177 802 M 802 (842)
Q Consensus 802 l 802 (842)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 4
No 403
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.93 Score=48.17 Aligned_cols=195 Identities=14% Similarity=0.098 Sum_probs=115.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCc-cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 003177 601 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 679 (842)
Q Consensus 601 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~-~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~ 679 (842)
-.+-+.++.++. .+.+.+..+.-++|.|+.++..+...-.-.. +.-.++..+ |+ +++.+..|.-+.++|+.+..
T Consensus 85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn-~aYVadlddgfLivdvsdps 159 (370)
T COG5276 85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GN-YAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CC-EEEEeeccCcEEEEECCCCC
Confidence 345567778864 5777787888899999998876544322222 445566665 44 55566656667788887643
Q ss_pred ---eeeEEeecCC-eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-EEEE-eCCCCCEEEEEEcCCCCEEEEEeCCeEE
Q 003177 680 ---CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKL-QGHKNQVHSVCWNTSGEYLASVSDELVR 753 (842)
Q Consensus 680 ---~i~~~~~~~~-i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~-~~~l-~~h~~~V~sl~~spdg~~LasgsDg~I~ 753 (842)
....+...+. ...++++ |++.+++..|+.+.+.|+..... +..- ......+.++..+++-.+++...+| +.
T Consensus 160 sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg-vl 236 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG-VL 236 (370)
T ss_pred CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc-eE
Confidence 2333333332 3556665 56778888999999999986532 2211 1123367788877766666655454 66
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 754 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 754 IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
+-|.........+...+. ..++..-.+.-.+++.++...+.-+-+.|+.+
T Consensus 237 ivd~s~~ssp~~~gsyet-~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 237 IVDVSGPSSPTVFGSYET-SNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred EEecCCCCCceEeecccc-CCcccccceecccceeeeeccccCceeEeccC
Confidence 677766543333333322 22222213444455666666666666666654
No 404
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.61 E-value=0.9 Score=50.44 Aligned_cols=232 Identities=11% Similarity=0.137 Sum_probs=117.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeeEe----ecCccceEEEEEcCC---CCcEEEEEeCC-------
Q 003177 604 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTF----TGHSTTVMSLDFHPS---KEDLLCSCDNN------- 667 (842)
Q Consensus 604 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~--~i~~~----~~h~~~V~sl~fspd---g~~llasgs~D------- 667 (842)
..+.|+|.||+++|++ ...|.|++++.+ +.. .+... .........++++|+ ...+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4678999999877665 569999999933 222 12222 233466899999994 23333333321
Q ss_pred -CcEEEEECCCC--c-----ee-eEEee----cCCeeEEEEeCCCCEEEEEEcCC-------------eEEEEECCCCe-
Q 003177 668 -SEIRYWSINNG--S-----CA-GVFKC----QSGATQMRFQPRLGRILAAAIEN-------------YISILDVETQV- 720 (842)
Q Consensus 668 -g~I~vwDl~t~--~-----~i-~~~~~----~~~i~~v~~sp~g~~l~~~s~dg-------------~I~IwDl~t~~- 720 (842)
..|.-|....+ . .+ ..... ......+.|.|++..+++.+..+ .|.-.+.....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 24444554433 1 11 11111 12356799999986665555422 33333332110
Q ss_pred ------------EEEEEeCCCCCEEEEEEcCC-CCEEEEEe--CCeEEEEEcCCCCC-----------------------
Q 003177 721 ------------CRLKLQGHKNQVHSVCWNTS-GEYLASVS--DELVRVWSIGSGSK----------------------- 762 (842)
Q Consensus 721 ------------~~~~l~~h~~~V~sl~~spd-g~~Lasgs--Dg~I~IwDl~s~~~----------------------- 762 (842)
...--.++. ....++|+|. |.++++-. +..=.|.-+..+..
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 000011222 3457999998 76666533 43223332332210
Q ss_pred ---ceeEEEeecCCCceEEEEEeCC-------CCEEEEEEcCCeEEEEECCCCeEE----EE-ccCCCCeeEEEEeCCCC
Q 003177 763 ---GECIHELSCTGNKFHSCVFHPT-------FPSLLVIGCYETLELWNMTENKTL----TL-SAHDKLVSSLAASTVNG 827 (842)
Q Consensus 763 ---~~~i~~~~~~~~~I~sv~~spd-------g~~L~sgs~dg~I~Iwdl~~~~~~----~~-~~h~~~V~sla~spdg~ 827 (842)
..++..+.. ...+..+.|... +.+|++.-..+.|....++.+..+ .+ ......+..|++.|||.
T Consensus 240 ~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAYPP-HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TTS---SEEETT-T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCcCccceeecC-ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 012222222 244556666543 333444444558888888755333 22 23445899999999999
Q ss_pred EEEEEeCCCcEE
Q 003177 828 MVASASHDKCVK 839 (842)
Q Consensus 828 ~Lasgs~DG~V~ 839 (842)
++++.+.+|.|+
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 999888899874
No 405
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.35 Score=51.42 Aligned_cols=160 Identities=13% Similarity=0.153 Sum_probs=100.2
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEee-cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 003177 598 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 676 (842)
Q Consensus 598 l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~ 676 (842)
+.+-...|.++.|+|+.+.|++......-.||=..++.. ++++. ..-.....|.|.-++. ++++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl-irtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL-IRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCce-EEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEc
Confidence 445556699999999999999888777766665555553 44332 1223345677776544 55566678888888776
Q ss_pred CCceeeEEe----------e-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE---EEEEeCC-------CCCEEEE
Q 003177 677 NGSCAGVFK----------C-QSGATQMRFQPRLGRILAAAIENYISILDVETQVC---RLKLQGH-------KNQVHSV 735 (842)
Q Consensus 677 t~~~i~~~~----------~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~---~~~l~~h-------~~~V~sl 735 (842)
....+..+. . +.+...++|.|....++++-+.+-+.||.+..... +.....+ -..|.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 653222111 1 45678899999999999998888777776653321 1111111 1246777
Q ss_pred EEcCCCCEEEE-Ee-CCeEEEEEcCC
Q 003177 736 CWNTSGEYLAS-VS-DELVRVWSIGS 759 (842)
Q Consensus 736 ~~spdg~~Las-gs-Dg~I~IwDl~s 759 (842)
.|++....|.+ +. ++.|.-.|...
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCC
Confidence 88875444444 44 55666666554
No 406
>PHA02713 hypothetical protein; Provisional
Probab=96.56 E-value=0.13 Score=61.38 Aligned_cols=178 Identities=7% Similarity=-0.039 Sum_probs=86.8
Q ss_pred CcEEEEEeCC------CcEEEEECCCCceeeEEeecCC-eeEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEE--
Q 003177 658 EDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRL-- 723 (842)
Q Consensus 658 ~~llasgs~D------g~I~vwDl~t~~~i~~~~~~~~-i~~v~~sp~g~~l~~~s~dg-----~I~IwDl~t~~~~~-- 723 (842)
+.+++.|+.+ ..+..||..+..-...-....+ .......-++..+++|+.++ .+..||..+.+-..
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 4566677643 3477888877653222111111 11122233456666777653 48889988763222
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEe-CC-----------------------eEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003177 724 KLQGHKNQVHSVCWNTSGEYLASVS-DE-----------------------LVRVWSIGSGSKGECIHELSCTGNKFHSC 779 (842)
Q Consensus 724 ~l~~h~~~V~sl~~spdg~~Lasgs-Dg-----------------------~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 779 (842)
.+.........+. -+|.+.+.|+ ++ .|..||..+.. ...+..+. .......
T Consensus 384 ~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~~v~~m~--~~r~~~~ 458 (557)
T PHA02713 384 DMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WETLPNFW--TGTIRPG 458 (557)
T ss_pred CCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-EeecCCCC--cccccCc
Confidence 1111111111222 2566666665 42 46677776641 11111111 1112222
Q ss_pred EEeCCCCEEEEEEcC------CeEEEEECCC-CeEEEEc---cCCCCeeEEEEeCCCCEEEEEeCCC--cEEEcC
Q 003177 780 VFHPTFPSLLVIGCY------ETLELWNMTE-NKTLTLS---AHDKLVSSLAASTVNGMVASASHDK--CVKIWK 842 (842)
Q Consensus 780 ~~spdg~~L~sgs~d------g~I~Iwdl~~-~~~~~~~---~h~~~V~sla~spdg~~Lasgs~DG--~V~IWd 842 (842)
+..-++...++|+.+ ..|..||..+ .+..... ........+. -++++.++|+.|| .|..||
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence 233345555555543 2478899987 5554222 2222222222 2688899999888 444443
No 407
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.56 E-value=0.0025 Score=64.87 Aligned_cols=140 Identities=14% Similarity=0.075 Sum_probs=79.5
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceee-EEe-ecCCeeE-
Q 003177 616 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFK-CQSGATQ- 692 (842)
Q Consensus 616 ~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~-~~~-~~~~i~~- 692 (842)
.|...+.||.|+-+++..-+...+...-|...-..+.+ ..-+++|+.+|.|++|+..-..... .+. ....|.+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~----~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA----SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc----CceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 34455678888888876543323322222222111222 2245578889999999887321111 111 1122222
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-CCEEEEEEcCCCCEEEEE--e-CCeEEEEEcCC
Q 003177 693 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASV--S-DELVRVWSIGS 759 (842)
Q Consensus 693 v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~-~~V~sl~~spdg~~Lasg--s-Dg~I~IwDl~s 759 (842)
+....++.+..+++.+|.|+.|++.-.+.+-....|. .++..+..+..+++|+.. + |..++.|++..
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 2233345578888999999999999887776666666 455555555555555554 3 55666666654
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.53 E-value=0.4 Score=52.30 Aligned_cols=203 Identities=12% Similarity=0.114 Sum_probs=96.6
Q ss_pred CCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeE-EEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003177 546 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR 624 (842)
Q Consensus 546 ~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 624 (842)
.|.++..+..-..-.+....+....++..+ .++..|.|+.=. +.++. ......-.+.+..+..++||.++++++...
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~-l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSAE-LAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEEE-EEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcEE-EEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence 344555543222222333444444444333 334445543322 22322 222345557799999999999999987777
Q ss_pred eEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCceeeE----E-eecCCeeEEEEeCC
Q 003177 625 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV----F-KCQSGATQMRFQPR 698 (842)
Q Consensus 625 ~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~----~-~~~~~i~~v~~sp~ 698 (842)
.+.-||--....... -..-...|..+.|.|++...+ ....|.|++=+.. ..+.-.. + ...-.+..++|.++
T Consensus 167 ~~~s~~~G~~~w~~~-~r~~~~riq~~gf~~~~~lw~--~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 167 FYSSWDPGQTTWQPH-NRNSSRRIQSMGFSPDGNLWM--LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp EEEEE-TT-SS-EEE-E--SSS-EEEEEE-TTS-EEE--EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred EEEEecCCCccceEE-ccCccceehhceecCCCCEEE--EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 777888654333222 223457899999999966333 3378888887722 2211111 1 11234788999988
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEeCCeEEEE
Q 003177 699 LGRILAAAIENYISILDVETQVCRLKLQ---GHKNQVHSVCWNTSGEYLASVSDELVRVW 755 (842)
Q Consensus 699 g~~l~~~s~dg~I~IwDl~t~~~~~~l~---~h~~~V~sl~~spdg~~LasgsDg~I~Iw 755 (842)
+..++ ++..|.+. ...+.++.-.... .-...++.|.|.++.+-++.|.+|.|--|
T Consensus 244 ~~~wa-~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 244 NEIWA-VGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp S-EEE-EESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCEEE-EeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 55555 55555443 3444443332222 23557889999888888888889987655
No 409
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.44 E-value=0.84 Score=51.07 Aligned_cols=188 Identities=15% Similarity=0.176 Sum_probs=116.7
Q ss_pred CCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcC----CCCE--EEEEeC-C---CeEEEEEcCCCCceee
Q 003177 570 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLSR--LATSSA-D---RTVRVWDTENPDYSLR 639 (842)
Q Consensus 570 pdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fsp----dg~~--Latgs~-D---g~I~IWDl~t~~~~i~ 639 (842)
|...+|+....++-+.+||+.. +.+..+. .+.++.+.... +++. |+.++. + .+|++|.++.....+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 3456788888889999999875 4555553 23344333321 3333 444443 2 4799998874333343
Q ss_pred Eeec-------CccceEEEEEc--C-CCCcEEEEEeCCCcEEEEECC---CC----ceeeEEeecCCeeEEEEeCCCCEE
Q 003177 640 TFTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRI 702 (842)
Q Consensus 640 ~~~~-------h~~~V~sl~fs--p-dg~~llasgs~Dg~I~vwDl~---t~----~~i~~~~~~~~i~~v~~sp~g~~l 702 (842)
.+.. ....++.+|+. + ++..+++....+|.+..|-+. .+ +.++.|...+.+..+......+.|
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 3322 11346777764 3 456677788889988888774 23 467888888899999999999999
Q ss_pred EEEEcCCeEEEEECCC-----CeEEEEEeC--CCCCEEEEEEcC--CC-CEEEEEe--CCeEEEEEcCCC
Q 003177 703 LAAAIENYISILDVET-----QVCRLKLQG--HKNQVHSVCWNT--SG-EYLASVS--DELVRVWSIGSG 760 (842)
Q Consensus 703 ~~~s~dg~I~IwDl~t-----~~~~~~l~~--h~~~V~sl~~sp--dg-~~Lasgs--Dg~I~IwDl~s~ 760 (842)
+++-++-.|.-|+.+- +..+....+ ....|..|++-. ++ .||++++ +++..||+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999999998872 222323222 345777887743 44 3677666 889999998764
No 410
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.38 E-value=0.92 Score=55.76 Aligned_cols=225 Identities=10% Similarity=0.039 Sum_probs=114.5
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEeccCCCC--------eEEEEEcC----------------CCCEEEEEeCCCeEE
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFSP----------------SLSRLATSSADRTVR 627 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~--------I~~l~fsp----------------dg~~Latgs~Dg~I~ 627 (842)
+..|++++.++.|+-.|..+|+.+-.+...... +..+.+.. ++..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 446777777889999999999888776432211 12233321 345788899999999
Q ss_pred EEEcCCCCceeeEeecCccceE-------------EEEEcC--CCCcEEEEEeC----------CCcEEEEECCCCceee
Q 003177 628 VWDTENPDYSLRTFTGHSTTVM-------------SLDFHP--SKEDLLCSCDN----------NSEIRYWSINNGSCAG 682 (842)
Q Consensus 628 IWDl~t~~~~i~~~~~h~~~V~-------------sl~fsp--dg~~llasgs~----------Dg~I~vwDl~t~~~i~ 682 (842)
-.|.++++.+. .+. ..+.|. .+.-.| .++ .++.++. +|.|+-+|+++|+.+.
T Consensus 274 ALDA~TGk~~W-~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCE-DFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEE-Eec-CCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 99999887542 221 111110 001111 123 3334432 6889999999999999
Q ss_pred EEeecCCeeEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003177 683 VFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 760 (842)
Q Consensus 683 ~~~~~~~i~~v~~sp~g~~l~~~s~dg-~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 760 (842)
.+........- ..+.+.....++... ....||.+.+....-.- ... ..+....+...... .+.|.-.|.+++
T Consensus 351 ~~~~g~p~~~~-~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptG-n~~----pd~~g~~r~~~~n~y~~slvALD~~TG 424 (764)
T TIGR03074 351 AWDPGNPDPTA-PPAPGETYTRNTPNSWSVASYDEKLGLVYLPMG-NQT----PDQWGGDRTPADEKYSSSLVALDATTG 424 (764)
T ss_pred EEecCCCCccc-CCCCCCEeccCCCCccCceEEcCCCCeEEEeCC-Ccc----ccccCCccccCcccccceEEEEeCCCC
Confidence 88753221110 011222222122111 33445555544322111 110 00100000000001 345555666665
Q ss_pred CCceeEEEeecCCC---------ceEEEEEeC-CC---CEEEEEEcCCeEEEEECCCCeEE
Q 003177 761 SKGECIHELSCTGN---------KFHSCVFHP-TF---PSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 761 ~~~~~i~~~~~~~~---------~I~sv~~sp-dg---~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
+ ..-.+..... ...-+.+.. +| +.++.++.+|.++++|.++|+.+
T Consensus 425 k---~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 425 K---ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred c---eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 2 2222221111 111122322 45 26888999999999999999887
No 411
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.34 E-value=1.4 Score=46.58 Aligned_cols=243 Identities=12% Similarity=-0.005 Sum_probs=150.6
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEee
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 642 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~ 642 (842)
-..|+-.+||..-+++...+.|--.|..+++....--+.......|..-||+...++-+.. .|.-.|-++.+.....+.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 4568888999988898888888889999998876666666677888899998877765443 455556555442222221
Q ss_pred --cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee--cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 643 --GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVET 718 (842)
Q Consensus 643 --~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t 718 (842)
..........|.+.|. +-+++. .|.---.|.. ...++++.. ......|+..|+|...++.-.++.|-..|..+
T Consensus 143 ~~~a~~nlet~vfD~~G~-lWFt~q-~G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 143 LEHADANLETAVFDPWGN-LWFTGQ-IGAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred cccCCCcccceeeCCCcc-EEEeec-cccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 1235677888999876 444554 2211111111 112222322 34577889999999999988899999988887
Q ss_pred CeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003177 719 QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 795 (842)
Q Consensus 719 ~~~~~~l~--~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg 795 (842)
+.....-. ........+--+|.|..-++.. .+.+..||-.... -....+.+....-.++.+...++.-++-...+
T Consensus 220 ~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grVW~sea~ag 297 (353)
T COG4257 220 GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVWLSEADAG 297 (353)
T ss_pred CCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcEEeeccccC
Confidence 63222111 1122344555567777777765 7788888765542 22334445555556666666665444444455
Q ss_pred eEEEEECCCCeEEEEc
Q 003177 796 TLELWNMTENKTLTLS 811 (842)
Q Consensus 796 ~I~Iwdl~~~~~~~~~ 811 (842)
.|.-||.++.....+.
T Consensus 298 ai~rfdpeta~ftv~p 313 (353)
T COG4257 298 AIGRFDPETARFTVLP 313 (353)
T ss_pred ceeecCcccceEEEec
Confidence 6777776666555444
No 412
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.27 E-value=0.24 Score=45.33 Aligned_cols=100 Identities=20% Similarity=0.186 Sum_probs=69.6
Q ss_pred eEEEEE---cCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003177 648 VMSLDF---HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 724 (842)
Q Consensus 648 V~sl~f---spdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~ 724 (842)
|+++++ ..+|..-|++|+.|..|++|+-. +.+..+.....+++++-... ..|+.+..+|+|-+|+-. ..+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee
Confidence 445544 45666778899999999999754 67778887888999888776 779999999999999863 33334
Q ss_pred EeCCCCCEEEEEEcC-CC---CEEEEEe-CCeEE
Q 003177 725 LQGHKNQVHSVCWNT-SG---EYLASVS-DELVR 753 (842)
Q Consensus 725 l~~h~~~V~sl~~sp-dg---~~Lasgs-Dg~I~ 753 (842)
.+. +..++++++.. ++ .-|++|- +|.|-
T Consensus 77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 442 33466665543 32 2455555 77764
No 413
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.26 E-value=1.6 Score=46.98 Aligned_cols=197 Identities=15% Similarity=0.134 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEecC-------CCeEEEEecc-----CCCCeEEEEEcCCCC------------EEE
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEE-----HTQWITDVRFSPSLS------------RLA 618 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd~~-------t~~~~~~l~~-----h~~~I~~l~fspdg~------------~La 618 (842)
-+.|+|+|.+.+-++....+...+||.. ...++.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4679999999887777778899999986 1223344432 234678888875332 367
Q ss_pred EEeCCCeEEEEEcCCCCc----eeeEeec-Cccce-EEEEEcC--CCCcEEEEEeCCCcEEEEECCCCceee--EEeec-
Q 003177 619 TSSADRTVRVWDTENPDY----SLRTFTG-HSTTV-MSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQ- 687 (842)
Q Consensus 619 tgs~Dg~I~IWDl~t~~~----~i~~~~~-h~~~V-~sl~fsp--dg~~llasgs~Dg~I~vwDl~t~~~i~--~~~~~- 687 (842)
.+++||+|.-|...-... ....+.. ....| ..+++.. .+..|.++--..++|.|||-.=.+... .+...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 888999999998532221 1122211 12333 3455543 345555555578899999865332211 11100
Q ss_pred --C-----Ce---------eEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcC------CCCE
Q 003177 688 --S-----GA---------TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNT------SGEY 743 (842)
Q Consensus 688 --~-----~i---------~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~--~h~~~V~sl~~sp------dg~~ 743 (842)
. .| +-..-.++...-+.+..-|.|.+||+.. ..+.++. +.-..-..|+..| .+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0 01 1111112222222333346899999874 4444442 2333445666655 4555
Q ss_pred EEEEe-CCeEEEEEcCCC
Q 003177 744 LASVS-DELVRVWSIGSG 760 (842)
Q Consensus 744 Lasgs-Dg~I~IwDl~s~ 760 (842)
|+.-- ||+|.+||..++
T Consensus 264 LVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSG 281 (336)
T ss_pred EEeecCCceeEEecCCCC
Confidence 55444 999999999887
No 414
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.16 E-value=3.2 Score=46.95 Aligned_cols=220 Identities=9% Similarity=0.055 Sum_probs=104.6
Q ss_pred CCCEEEEEe-CCCeEEEEEcCCCCc---eeeEeec---Cc----cceEEEEEcCCCCcEEEEE--e----CCCcEEEEEC
Q 003177 613 SLSRLATSS-ADRTVRVWDTENPDY---SLRTFTG---HS----TTVMSLDFHPSKEDLLCSC--D----NNSEIRYWSI 675 (842)
Q Consensus 613 dg~~Latgs-~Dg~I~IWDl~t~~~---~i~~~~~---h~----~~V~sl~fspdg~~llasg--s----~Dg~I~vwDl 675 (842)
+.++|+..+ ..+.|+|+|+.+... ..+.+.. +. .....+..-|+|..++ ++ + .-|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcC
Confidence 456777766 678999999984321 1222221 11 1223344457766444 43 2 2346888888
Q ss_pred CCCceeeEEeecCC----eeEEEEeCCCCEEEEEEc--------------------CCeEEEEECCCCeEEEEEeCCCC-
Q 003177 676 NNGSCAGVFKCQSG----ATQMRFQPRLGRILAAAI--------------------ENYISILDVETQVCRLKLQGHKN- 730 (842)
Q Consensus 676 ~t~~~i~~~~~~~~----i~~v~~sp~g~~l~~~s~--------------------dg~I~IwDl~t~~~~~~l~~h~~- 730 (842)
++.+.......... -..+-|.|..+.+++... ...+.+||+.+.+.+.++.--..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 88877777665332 456778888887777643 34799999999999988874332
Q ss_pred -CEEEEEEc--CCCCEEEEEe--CCeEEEEEcCCCCCc--eeEEEeecC-----------------CCceEEEEEeCCCC
Q 003177 731 -QVHSVCWN--TSGEYLASVS--DELVRVWSIGSGSKG--ECIHELSCT-----------------GNKFHSCVFHPTFP 786 (842)
Q Consensus 731 -~V~sl~~s--pdg~~Lasgs--Dg~I~IwDl~s~~~~--~~i~~~~~~-----------------~~~I~sv~~spdg~ 786 (842)
....|.|. |+..+=++++ .+.|..|--...... +.+..+... ..-|+.+.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 34456664 4555555544 666655544222211 122222111 24578999999999
Q ss_pred EEEEEEc-CCeEEEEECCCCe---EE-E-Ecc---------------CCCCeeEEEEeCCCCEEEEEe
Q 003177 787 SLLVIGC-YETLELWNMTENK---TL-T-LSA---------------HDKLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 787 ~L~sgs~-dg~I~Iwdl~~~~---~~-~-~~~---------------h~~~V~sla~spdg~~Lasgs 833 (842)
+|++++. .|.|+.||+.+.. ++ . ..+ -.+...-|..|.||+.|+..+
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9999886 6799999997643 22 1 111 112345678888998776543
No 415
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.10 E-value=2.2 Score=48.02 Aligned_cols=144 Identities=11% Similarity=0.116 Sum_probs=80.6
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCC-cEEEEecCC--Ce--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003177 561 SKVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR 624 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs-----------~Dg-~I~vwd~~t--~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 624 (842)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.......+.++|.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3467899999998877643 223 677776432 32 234444444557889999888 44444444
Q ss_pred eEEEEEcCCC-----C--ceeeEeec----CccceEEEEEcCCCCcEEEEEeC------------------CCcEEEEEC
Q 003177 625 TVRVWDTENP-----D--YSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSI 675 (842)
Q Consensus 625 ~I~IWDl~t~-----~--~~i~~~~~----h~~~V~sl~fspdg~~llasgs~------------------Dg~I~vwDl 675 (842)
.+++.|.+.. . ..+..+.. +......++|.|+|..++..++. .|.|..++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334454321 1 11111221 12447789999998755544421 144566666
Q ss_pred CCCceeeEEeecCCeeEEEEeCCCCEEEEEE
Q 003177 676 NNGSCAGVFKCQSGATQMRFQPRLGRILAAA 706 (842)
Q Consensus 676 ~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s 706 (842)
..++.............++|++++..+++-.
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 5544332222233457899999887765543
No 416
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.09 E-value=1.5 Score=46.79 Aligned_cols=140 Identities=18% Similarity=0.175 Sum_probs=87.7
Q ss_pred CeEEEEEcCCCCEEEEEe---CCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEE-CCCCc
Q 003177 604 WITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS-INNGS 679 (842)
Q Consensus 604 ~I~~l~fspdg~~Latgs---~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwD-l~t~~ 679 (842)
.+.+.++++++..++... ....++++...... ...+.+ ..+....|++++. +.+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~g--~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLTG--GSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeeccC--CccccccccCCCC-EEEEEcCCCceEEEEecCCCc
Confidence 688999999999887766 33456666544322 222232 3788889999955 554555555566663 33333
Q ss_pred eee-EEee--c-CCeeEEEEeCCCCEEEEEEc---CCeEEEEECC---CC------eEEEEEeCCCCCEEEEEEcCCCCE
Q 003177 680 CAG-VFKC--Q-SGATQMRFQPRLGRILAAAI---ENYISILDVE---TQ------VCRLKLQGHKNQVHSVCWNTSGEY 743 (842)
Q Consensus 680 ~i~-~~~~--~-~~i~~v~~sp~g~~l~~~s~---dg~I~IwDl~---t~------~~~~~l~~h~~~V~sl~~spdg~~ 743 (842)
... .... . ..|..+.++|||..++.... ++.|.+--+. .+ ..+.........++.+.|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 221 1111 1 27999999999999888773 4667665433 22 111222233468899999999998
Q ss_pred EEEEe
Q 003177 744 LASVS 748 (842)
Q Consensus 744 Lasgs 748 (842)
++.+.
T Consensus 180 ~V~~~ 184 (253)
T PF10647_consen 180 VVLGR 184 (253)
T ss_pred EEEeC
Confidence 88877
No 417
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.03 E-value=1.9 Score=49.15 Aligned_cols=72 Identities=13% Similarity=0.228 Sum_probs=49.6
Q ss_pred CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEE-EEE-cCC----------------CCEEEEEe--
Q 003177 689 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS-VCW-NTS----------------GEYLASVS-- 748 (842)
Q Consensus 689 ~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~s-l~~-spd----------------g~~Lasgs-- 748 (842)
.+.+++.+|.+.+.++...-|.|.++|+.++..++.+++..+.=.. +.. ... ..+|+.-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 3778999999887777666699999999999888888775542111 110 111 12344433
Q ss_pred CCeEEEEEcCCC
Q 003177 749 DELVRVWSIGSG 760 (842)
Q Consensus 749 Dg~I~IwDl~s~ 760 (842)
-|.|.||+++.+
T Consensus 389 Rg~lEvW~~~~g 400 (415)
T PF14655_consen 389 RGILEVWSMRQG 400 (415)
T ss_pred CCeEEEEecCCC
Confidence 789999999887
No 418
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.059 Score=65.42 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=70.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecC----
Q 003177 613 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS---- 688 (842)
Q Consensus 613 dg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~---- 688 (842)
-+..++.|+..|.|...|+...-.....-..-.++|++++|+.+|. +++.|-.+|.|.+||+..++.++.+....
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3457888989999999888754222222223357899999999977 66688889999999999999888877532
Q ss_pred CeeEEEEeCCCCEEEEEEcCCe
Q 003177 689 GATQMRFQPRLGRILAAAIENY 710 (842)
Q Consensus 689 ~i~~v~~sp~g~~l~~~s~dg~ 710 (842)
++..+.+..++..++++...|.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc
Confidence 3445555666666777777775
No 419
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=0.063 Score=65.43 Aligned_cols=140 Identities=11% Similarity=0.051 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCEEEEEEC--CCcEEEEecCCCeEEE-----Eec------cCCCCeEEEEEcCC-CCEEEEEeCCCeEEE
Q 003177 563 VESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKS-----TLE------EHTQWITDVRFSPS-LSRLATSSADRTVRV 628 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~--Dg~I~vwd~~t~~~~~-----~l~------~h~~~I~~l~fspd-g~~Latgs~Dg~I~I 628 (842)
|..+...+|++..++... +-.|.+||+++..... -|. .....+.++.|+|. -...+++..|+.|+|
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 455566667766554433 3378889987543221 111 22234568889885 334667778999999
Q ss_pred EEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-----cCCeeEEEEeCCCCEEE
Q 003177 629 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRIL 703 (842)
Q Consensus 629 WDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-----~~~i~~v~~sp~g~~l~ 703 (842)
..+......+.. ......++|++|+|.|..++ .|...|++.-|... .+....+.+ ...|.+|+|.....+++
T Consensus 183 ~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~-iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 183 KSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLF-IGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhcc-cCcccceeeEEeccccceee-EecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 887653332333 23457789999999988554 78889998888654 333333332 35689999988766655
Q ss_pred EE
Q 003177 704 AA 705 (842)
Q Consensus 704 ~~ 705 (842)
+-
T Consensus 260 vy 261 (1405)
T KOG3630|consen 260 VY 261 (1405)
T ss_pred Ee
Confidence 43
No 420
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.89 E-value=0.0098 Score=60.61 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=80.7
Q ss_pred EEEEEcCCeEEEEECCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE-E
Q 003177 702 ILAAAIENYISILDVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH-S 778 (842)
Q Consensus 702 l~~~s~dg~I~IwDl~t~~~~~~-l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~-s 778 (842)
+.+.+.++.|.-++++..+.... ..-|.....-+ .-+.-+++|+ +|.|++|...-.. .....+......|. .
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g--~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEG--AHSDRVCSGEESIDLG 107 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccc--hHHHhhhcccccceec
Confidence 45556677777777664322111 01111111111 2234456666 9999999876221 11111111122222 2
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE-ccCC-CCeeEEEEeCCCCEEEEE--eCCCcEEEcC
Q 003177 779 CVFHPTFPSLLVIGCYETLELWNMTENKTLTL-SAHD-KLVSSLAASTVNGMVASA--SHDKCVKIWK 842 (842)
Q Consensus 779 v~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~-~~h~-~~V~sla~spdg~~Lasg--s~DG~V~IWd 842 (842)
+..-.++.+.++++.++.|+.|++.-++.+.. ..|. .++..+..+..+++|+++ |.|..++.|+
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence 23334556889999999999999999988844 4555 567777777778888888 8888888886
No 421
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.87 E-value=2.6 Score=43.49 Aligned_cols=215 Identities=12% Similarity=0.123 Sum_probs=118.2
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEE-EeccCCCCeEEEEEcCCC---CEEEEEeCCCeEEEEEcCCCCc-eeeEee----
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENPDY-SLRTFT---- 642 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~-~l~~h~~~I~~l~fspdg---~~Latgs~Dg~I~IWDl~t~~~-~i~~~~---- 642 (842)
+.++.+--..|.|.-||+...+..+ ++++. ++.++.|--.+ .+.+.++..-.|.-||...... ..+++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 4455555566778889987654432 23322 13333332222 2333333333445566432221 112211
Q ss_pred -cCccceEEEEEcCCCCcEEEEEeC--------CCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEc-CCeEE
Q 003177 643 -GHSTTVMSLDFHPSKEDLLCSCDN--------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYIS 712 (842)
Q Consensus 643 -~h~~~V~sl~fspdg~~llasgs~--------Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~-dg~I~ 712 (842)
......++-..+|+|+++.-+-.. .|.++.|-.. ++....+..-.-.+.++|+.+.+.++.... +-.|.
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 113456667778998864322221 2455555443 222223333333467888887777665544 55676
Q ss_pred EEE--CCCC-----eEEEEEeC----CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003177 713 ILD--VETQ-----VCRLKLQG----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 780 (842)
Q Consensus 713 IwD--l~t~-----~~~~~l~~----h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 780 (842)
-|| ..++ +.+..++. ..-....++++.+|.+.+++- .++|..+|..++ +.+.++......|++|+
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG---K~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG---KILLEIKLPTPQITSCC 260 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC---cEEEEEEcCCCceEEEE
Confidence 677 4444 33444432 111223556677888777776 789999999998 78888888889999999
Q ss_pred EeCC-CCEEEEEE
Q 003177 781 FHPT-FPSLLVIG 792 (842)
Q Consensus 781 ~spd-g~~L~sgs 792 (842)
|--. -..+++.+
T Consensus 261 FgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 261 FGGKNLDILYVTT 273 (310)
T ss_pred ecCCCccEEEEEe
Confidence 9654 33444443
No 422
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.087 Score=64.04 Aligned_cols=71 Identities=27% Similarity=0.389 Sum_probs=57.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEE---EcCCCCEEEEEeCCCeEEEEEc
Q 003177 559 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR---FSPSLSRLATSSADRTVRVWDT 631 (842)
Q Consensus 559 H~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~---fspdg~~Latgs~Dg~I~IWDl 631 (842)
-.++|++++|+.||++++.|-.+|.|.+||+..++..+.+..|..+.+.+- +..++..++++...|. +|.+
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 357899999999999999999999999999999999988887776655544 3445667888877776 5554
No 423
>PHA03098 kelch-like protein; Provisional
Probab=95.67 E-value=0.38 Score=57.08 Aligned_cols=156 Identities=10% Similarity=0.073 Sum_probs=74.6
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCceeeEEeecCC--eeEEEEeCCCCEEEEEEcC------CeEEEEECCCCeEEEE
Q 003177 658 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLK 724 (842)
Q Consensus 658 ~~llasgs~D-----g~I~vwDl~t~~~i~~~~~~~~--i~~v~~sp~g~~l~~~s~d------g~I~IwDl~t~~~~~~ 724 (842)
+.+++.|+.+ ..+..||..+.+-...-....+ -.+++ .-++..++.|+.+ +.+..||..+.+-...
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 4466677654 3577788876553322111111 11222 2344556666632 4688899887543221
Q ss_pred --EeCCCCCEEEEEEcCCCCEEEEEe-C--------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003177 725 --LQGHKNQVHSVCWNTSGEYLASVS-D--------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 793 (842)
Q Consensus 725 --l~~h~~~V~sl~~spdg~~Lasgs-D--------g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~ 793 (842)
+...... .+++. .++.+++.|+ + ..+.+||..+..- ..+............+.+ ++..+++|+.
T Consensus 422 ~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPISHYG-GCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCIF--NNKIYVVGGD 496 (534)
T ss_pred CCCCccccC-ceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCce-eeCCCCCcccccceEEEE--CCEEEEEcCC
Confidence 1111111 12222 3555555554 2 1388888876521 111111111111122222 5555566654
Q ss_pred C-----CeEEEEECCCCeEEEEccCCCCeeE
Q 003177 794 Y-----ETLELWNMTENKTLTLSAHDKLVSS 819 (842)
Q Consensus 794 d-----g~I~Iwdl~~~~~~~~~~h~~~V~s 819 (842)
+ ..|.+||..+.....+......+.+
T Consensus 497 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~ 527 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNTWTLFCKFPKVIGS 527 (534)
T ss_pred cCCcccceeEEEeCCCCEEEecCCCcccccc
Confidence 3 4789999988877655443333333
No 424
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=1.3 Score=49.56 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=85.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEE----EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 633 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t 633 (842)
...++|.++.||+|.+.||+--.|++|-+++....+.. .+.+..+..|...+|+.+ .-+|..+..| +-+|-+..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 34568999999999999999999999999987432222 223345566999999866 4566665555 77787776
Q ss_pred CCceeeEeecCccceEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCce
Q 003177 634 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSC 680 (842)
Q Consensus 634 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs-~Dg~I~vwDl~t~~~ 680 (842)
....++....|...|.-..|+++..-++.+.+ ..+++.=+-++++..
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeecee
Confidence 55567777888889999999998765554444 344454455554443
No 425
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.63 E-value=0.5 Score=54.53 Aligned_cols=170 Identities=12% Similarity=0.167 Sum_probs=103.8
Q ss_pred cceEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCceeeEEeecCCeeEEEEeCC----CCEEEEEEcCCeEEEEECCC-
Q 003177 646 TTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LGRILAAAIENYISILDVET- 718 (842)
Q Consensus 646 ~~V~sl~fspdg~~llasgs--~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~----g~~l~~~s~dg~I~IwDl~t- 718 (842)
.+|..++|. ||+.++.+.- .+|.+++=| .+.+..| ..|..+.|.|- ...+++.-....|.||-+.-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 467888886 5565655542 233333322 1223333 56888999884 34688888889999998752
Q ss_pred ----CeEEEEEeC-C--CCC--EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003177 719 ----QVCRLKLQG-H--KNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 788 (842)
Q Consensus 719 ----~~~~~~l~~-h--~~~--V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L 788 (842)
.+.+..-.. . .-+ -..+.|+|....|++-. .+.-.+++++... ..+..-....+.|.|.+|..||..|
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~--srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS--SRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC--ceEEEeccCCceEEEEEecCcCCEE
Confidence 222222111 1 112 24678999999998877 4444566766543 2232222457889999999999988
Q ss_pred EEEEcCC-eEEEEECCCCeEE-----EEccCCCCeeEEEEeC
Q 003177 789 LVIGCYE-TLELWNMTENKTL-----TLSAHDKLVSSLAAST 824 (842)
Q Consensus 789 ~sgs~dg-~I~Iwdl~~~~~~-----~~~~h~~~V~sla~sp 824 (842)
+++-... .-+|||-...... .+..-.+.|.+|.-.-
T Consensus 171 VVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~ 212 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATV 212 (671)
T ss_pred EEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEec
Confidence 8776665 7889986543322 3334455666665443
No 426
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.57 E-value=1.5 Score=54.02 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=47.0
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEEeecCCee-------------EEEEeC--CCCEEEEEEc----------CCeEEEE
Q 003177 660 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-------------QMRFQP--RLGRILAAAI----------ENYISIL 714 (842)
Q Consensus 660 llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~-------------~v~~sp--~g~~l~~~s~----------dg~I~Iw 714 (842)
.++.++.|+.|.-.|.++|+.+..+...+.+. .+.-.| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 45567779999999999999988775433221 111112 2456677643 5889999
Q ss_pred ECCCCeEEEEEe
Q 003177 715 DVETQVCRLKLQ 726 (842)
Q Consensus 715 Dl~t~~~~~~l~ 726 (842)
|.++++.+..+.
T Consensus 342 Da~TGkl~W~~~ 353 (764)
T TIGR03074 342 DVNTGALVWAWD 353 (764)
T ss_pred ECCCCcEeeEEe
Confidence 999999998876
No 427
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.56 E-value=9 Score=47.40 Aligned_cols=163 Identities=11% Similarity=0.120 Sum_probs=87.2
Q ss_pred EEEEECCCCceeeEEeecC-----CeeEEEEeCCCCE--EEEEEc-----------CCeEEEEECC-CCeEEEEEe--CC
Q 003177 670 IRYWSINNGSCAGVFKCQS-----GATQMRFQPRLGR--ILAAAI-----------ENYISILDVE-TQVCRLKLQ--GH 728 (842)
Q Consensus 670 I~vwDl~t~~~i~~~~~~~-----~i~~v~~sp~g~~--l~~~s~-----------dg~I~IwDl~-t~~~~~~l~--~h 728 (842)
|+++|..+++.+..+.... .+..+.|+..... ++++.. +|.++.|++- .++.+.-+. .-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 5666666666555554422 2445555543333 333332 3446677653 233222221 12
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee--cCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCC
Q 003177 729 KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTE 804 (842)
Q Consensus 729 ~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~--~~~~~I~sv~~spdg~~L~sgs~dg~I~I--wdl~~ 804 (842)
.+.|. +..|...++++|-...+++||+... +.++... .....|+.+.+ .+..|++|.....|.+ |+-.+
T Consensus 935 ~~~v~--Ai~~f~~~~LagvG~~l~~YdlG~K---~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 935 PGPVG--AICPFQGRVLAGVGRFLRLYDLGKK---KLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred Cccce--EEeccCCEEEEecccEEEEeeCChH---HHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCC
Confidence 23333 4557777888888899999999765 2222222 12344555554 3457888887775554 45555
Q ss_pred CeEEEEcc--CCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 805 NKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 805 ~~~~~~~~--h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
++++.+.. ....|+++.+- |...+|.+..=|.+.+
T Consensus 1008 n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1008 NQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAV 1044 (1205)
T ss_pred CeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEE
Confidence 66654442 23456666654 4445666666666554
No 428
>PRK13684 Ycf48-like protein; Provisional
Probab=95.53 E-value=1.4 Score=48.90 Aligned_cols=150 Identities=11% Similarity=0.050 Sum_probs=87.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceee-EeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce
Q 003177 602 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 680 (842)
Q Consensus 602 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~-~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~ 680 (842)
...+.++.+.+++.+++++ ..|.+..- .+.+..... ....-...++++.+.+++. +++.+ ..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence 4578899999988766665 45544432 122211121 2223346789999999876 44343 467665433444433
Q ss_pred eeEEee-----cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE---eCCCCCEEEEEEcCCCCEEEEEeCCeE
Q 003177 681 AGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELV 752 (842)
Q Consensus 681 i~~~~~-----~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l---~~h~~~V~sl~~spdg~~LasgsDg~I 752 (842)
-..... ...+..+.+.+++. +++++.+|.|.. ....++.-... ..-......+.|..+++.+++|..|.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 222221 13467888888755 555666676553 33433332222 122346788888888888888889988
Q ss_pred EEEEc
Q 003177 753 RVWSI 757 (842)
Q Consensus 753 ~IwDl 757 (842)
..|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 87763
No 429
>PLN02153 epithiospecifier protein
Probab=95.41 E-value=1.5 Score=48.84 Aligned_cols=176 Identities=8% Similarity=-0.037 Sum_probs=80.8
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCceeeEEee-----c-CCeeEEEEeCCCCEEEEEEcC-----------CeEEEEE
Q 003177 658 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKC-----Q-SGATQMRFQPRLGRILAAAIE-----------NYISILD 715 (842)
Q Consensus 658 ~~llasgs~D-----g~I~vwDl~t~~~i~~~~~-----~-~~i~~v~~sp~g~~l~~~s~d-----------g~I~IwD 715 (842)
+.+++.|+.+ ..+.+||+.+.+-...-.. . ......+...++..++.|+.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4466666643 3578889887554322111 1 111112222344556666643 2477889
Q ss_pred CCCCeEEEEEeCC-----CCCEEEEEEcCCCCEEEEEe-C-------------CeEEEEEcCCCCCceeEEEee-cCCCc
Q 003177 716 VETQVCRLKLQGH-----KNQVHSVCWNTSGEYLASVS-D-------------ELVRVWSIGSGSKGECIHELS-CTGNK 775 (842)
Q Consensus 716 l~t~~~~~~l~~h-----~~~V~sl~~spdg~~Lasgs-D-------------g~I~IwDl~s~~~~~~i~~~~-~~~~~ 775 (842)
.++.+-.. +... ...-.+++. -++++++.++ + ..|.+||+.+..= ..+.... .....
T Consensus 166 ~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W-~~~~~~g~~P~~r 242 (341)
T PLN02153 166 IADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW-TEVETTGAKPSAR 242 (341)
T ss_pred CCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcE-EeccccCCCCCCc
Confidence 88654321 1111 011112222 2455555433 2 3588888876521 1111110 01111
Q ss_pred eEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCeEEEEccC------CCC--eeEEEEeCCCCEEEEEe
Q 003177 776 FHSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTLSAH------DKL--VSSLAASTVNGMVASAS 833 (842)
Q Consensus 776 I~sv~~spdg~~L~sgs~d--------------g~I~Iwdl~~~~~~~~~~h------~~~--V~sla~spdg~~Lasgs 833 (842)
....+...++..+++|+.. ..|+.||+.+.....+... ... ..++.+..++++++.|+
T Consensus 243 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 243 SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322 (341)
T ss_pred ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence 1112223345566666641 2688899887765543211 111 22334444556777777
Q ss_pred CCC
Q 003177 834 HDK 836 (842)
Q Consensus 834 ~DG 836 (842)
.++
T Consensus 323 ~~~ 325 (341)
T PLN02153 323 KLP 325 (341)
T ss_pred cCC
Confidence 643
No 430
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=0.12 Score=63.07 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=95.1
Q ss_pred CeEEEEEcCCCCEEEEE--eCCCeEEEEEcCCCCcee----eEee------cCccceEEEEEcCCCCcEEEEEeCCCcEE
Q 003177 604 WITDVRFSPSLSRLATS--SADRTVRVWDTENPDYSL----RTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIR 671 (842)
Q Consensus 604 ~I~~l~fspdg~~Latg--s~Dg~I~IWDl~t~~~~i----~~~~------~h~~~V~sl~fspdg~~llasgs~Dg~I~ 671 (842)
.|..+...+|+...++. +.+-.|..||+++-.... .-+. .....+.++.|.|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 44555556676654443 344488999987532111 1111 12234568889987666677788899999
Q ss_pred EEECCCCc-eeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeC----CCCCEEEEEEcCCCCEEEE
Q 003177 672 YWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLAS 746 (842)
Q Consensus 672 vwDl~t~~-~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~----h~~~V~sl~~spdg~~Las 746 (842)
+..+..-. .+..+......++++|+|.|..+++|...|++.-|...-. ....+.. ....|.||+|...-.++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 98876432 2333455677899999999999999999999998876532 2222221 2468999999988888776
Q ss_pred Ee
Q 003177 747 VS 748 (842)
Q Consensus 747 gs 748 (842)
-+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 54
No 431
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.37 E-value=2.7 Score=44.42 Aligned_cols=208 Identities=12% Similarity=0.070 Sum_probs=128.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEE
Q 003177 605 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 684 (842)
Q Consensus 605 I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~ 684 (842)
-..|+-.+||...+++...+.|--.|..+++. ...-.+....-..|..-||+...| +....-|.-+|-++.+..+ |
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg~~Wi--td~~~aI~R~dpkt~evt~-f 139 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDGSAWI--TDTGLAIGRLDPKTLEVTR-F 139 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCce-EEEecCCCCCCceEEECCCCCeeE--ecCcceeEEecCcccceEE-e
Confidence 45677888998888888888888888888764 233334445566788888887555 3222256666766554332 2
Q ss_pred ee-----cCCeeEEEEeCCCCEEEEEEcC---------CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C
Q 003177 685 KC-----QSGATQMRFQPRLGRILAAAIE---------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 749 (842)
Q Consensus 685 ~~-----~~~i~~v~~sp~g~~l~~~s~d---------g~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D 749 (842)
.. ........|.+.|...+++... +.|++|+.- ....-..||..|||...++.- +
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccc
Confidence 21 3457788999999888887632 234444432 233457889999999887765 7
Q ss_pred CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEeCCCC
Q 003177 750 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNG 827 (842)
Q Consensus 750 g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~--~~~~h~~~V~sla~spdg~ 827 (842)
+.|-..|..++.. +.+..-.........+-.+|.+..-++....+.++.||....... .+.+....-.++.+...++
T Consensus 210 naiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 210 NAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred cceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 7777777766521 233222222344455666777776666666678888887655443 3334333444444444343
No 432
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.34 E-value=0.54 Score=52.99 Aligned_cols=146 Identities=11% Similarity=0.019 Sum_probs=82.6
Q ss_pred CCeeEEEEeCCCCEEEEEE-----------cCC-eEEEEECCC--Ce--EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCe
Q 003177 688 SGATQMRFQPRLGRILAAA-----------IEN-YISILDVET--QV--CRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 751 (842)
Q Consensus 688 ~~i~~v~~sp~g~~l~~~s-----------~dg-~I~IwDl~t--~~--~~~~l~~h~~~V~sl~~spdg~~LasgsDg~ 751 (842)
.....++|.++|+.+++-. ..+ .|.+++-.+ ++ ....+...-...+.+++.+++ +++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3456777888777665542 123 677776543 22 233443334456889999998 444 44334
Q ss_pred EE-EEEcCCCC----Cce-eEEEeecC----CCceEEEEEeCCCCEEEEEEcC-------------------CeEEEEEC
Q 003177 752 VR-VWSIGSGS----KGE-CIHELSCT----GNKFHSCVFHPTFPSLLVIGCY-------------------ETLELWNM 802 (842)
Q Consensus 752 I~-IwDl~s~~----~~~-~i~~~~~~----~~~I~sv~~spdg~~L~sgs~d-------------------g~I~Iwdl 802 (842)
|. +.|..... ..+ .+..+... ......++|.|||...++.+.. +.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 44 43543221 112 22223322 3447789999999765544421 35666666
Q ss_pred CCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCC
Q 003177 803 TENKTLTLSAHDKLVSSLAASTVNGMVASASHD 835 (842)
Q Consensus 803 ~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~D 835 (842)
.+++...+...-.....++|+++|+++++-..+
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 666554433333456789999999887764433
No 433
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.27 E-value=6.7 Score=44.15 Aligned_cols=187 Identities=5% Similarity=-0.046 Sum_probs=101.0
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeEeecC-ccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecC--Cee
Q 003177 615 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GAT 691 (842)
Q Consensus 615 ~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h-~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~--~i~ 691 (842)
..++++..+|.|.-.|.+++.......... ...+.+-.+..+|+ ++.++.++.++.+|.++|+.+..+.... .+.
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 345555788888888888766322111111 12233333333554 5567778899999999999998888766 111
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC---CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeE
Q 003177 692 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECI 766 (842)
Q Consensus 692 ~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~---~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i 766 (842)
...+. ....++..+.++.++..|..+++.+....... ..+..-....++..++... ++.+.-+|..++. .+
T Consensus 147 ~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~---~~ 222 (370)
T COG1520 147 SPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT---LK 222 (370)
T ss_pred cCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc---Ee
Confidence 11222 23445555578999999999998877654322 1111111122333333333 3456666666653 22
Q ss_pred EEee----cCCC------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 767 HELS----CTGN------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 767 ~~~~----~~~~------~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
...+ .... .+..-.+.-++ .++.++.++.+..+|..+++.+
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence 2210 0000 11111111122 2467777778888888888877
No 434
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.16 E-value=8.2 Score=47.99 Aligned_cols=177 Identities=16% Similarity=0.194 Sum_probs=98.2
Q ss_pred cCCCCeEEEEEc---C----CCCEEEEEeCCCeEEEEEcCCC------C--------ceeeEeec---CccceEEEEEcC
Q 003177 600 EHTQWITDVRFS---P----SLSRLATSSADRTVRVWDTENP------D--------YSLRTFTG---HSTTVMSLDFHP 655 (842)
Q Consensus 600 ~h~~~I~~l~fs---p----dg~~Latgs~Dg~I~IWDl~t~------~--------~~i~~~~~---h~~~V~sl~fsp 655 (842)
....+|..|+|. . ..++|++= ....+.|+...-. . .++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888887 2 12355544 4455666662110 0 11222221 124567788888
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEE
Q 003177 656 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV 735 (842)
Q Consensus 656 dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl 735 (842)
....-||..+..|...||++....... ... .-+.....|.| ++|... .+.-..|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~-----~~~----------~~~~~~~~gsi-~~d~~e----------~s~w~rI 209 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRK-----SSN----------LRLSRNISGSI-IFDPEE----------LSNWKRI 209 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccC-----Ccc----------eeeccCCCccc-cCCCcc----------cCcceee
Confidence 777788888888888888882111100 001 11111112333 233221 1345678
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 736 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 736 ~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
.|.++...|++++...+.++|+.+......+ ........|..+.-++.....+..-....|..+++..
T Consensus 210 ~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 210 LWVSDSNRLLVCNRSKLMLIDFESNWQTEYL-VTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred EecCCCCEEEEEcCCceEEEECCCCCccchh-ccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 8988888999999888999999887432221 1222456677887777732222222335677777766
No 435
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.10 E-value=1.3 Score=54.00 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEE
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVL 586 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~v 586 (842)
-.|..|.++++|++||..|..|.+.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 46889999999999999988664443
No 436
>PHA03098 kelch-like protein; Provisional
Probab=94.97 E-value=0.83 Score=54.17 Aligned_cols=182 Identities=9% Similarity=0.021 Sum_probs=87.3
Q ss_pred CCCEEEEEECCC------cEEEEecCCCeEEEEecc---CCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCc
Q 003177 571 DGKLLATGGHDK------KAVLWCTESFTVKSTLEE---HTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDY 636 (842)
Q Consensus 571 dg~~Lasgs~Dg------~I~vwd~~t~~~~~~l~~---h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~t~~~ 636 (842)
++.+++.|+.++ .+..||..+.+.. .+.. .......+.+ ++..++.|+.+ ..+.+||..+...
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 456667776542 5778887765543 2211 1111222222 56777778765 3577888876543
Q ss_pred eeeEeecCccceEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCceeeEEeecCC--eeEEEEeCCCCEEEEEEcC
Q 003177 637 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE 708 (842)
Q Consensus 637 ~i~~~~~h~~~V~sl~fspdg~~llasgs~D------g~I~vwDl~t~~~i~~~~~~~~--i~~v~~sp~g~~l~~~s~d 708 (842)
....-..+...-.+++.. ++.+++.|+.+ ..+..||+.+.+-...-....+ ..++ ...++..+++|+.+
T Consensus 371 ~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~ 447 (534)
T PHA03098 371 REEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGIS 447 (534)
T ss_pred eeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCcc
Confidence 211100111111122222 24466666632 4588899887654332221111 1122 22344555566542
Q ss_pred --------CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCC
Q 003177 709 --------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG 760 (842)
Q Consensus 709 --------g~I~IwDl~t~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~ 760 (842)
..+.+||..+.+-... +.........+.+ ++++++.|+ + +.|.+||..+.
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388899887643221 1111111112222 566666665 2 36777777654
No 437
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.94 E-value=4.6 Score=49.43 Aligned_cols=94 Identities=14% Similarity=0.160 Sum_probs=54.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceee
Q 003177 603 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 682 (842)
Q Consensus 603 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~ 682 (842)
-.|..|.++++|.+|+..|..| |.|-.+.........+.+....|.|=.+.-+ ..++ .
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-~~~~-~------------------- 142 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-ERFF-T------------------- 142 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-hhhc-c-------------------
Confidence 3588889999999999888766 4444443211001122222233333332211 1122 1
Q ss_pred EEeecCCeeEEEEeCC---CCEEEEEEcCCeEEEEECCCC
Q 003177 683 VFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQ 719 (842)
Q Consensus 683 ~~~~~~~i~~v~~sp~---g~~l~~~s~dg~I~IwDl~t~ 719 (842)
......|..+.|+|. +..|++-+.|+.|++||+...
T Consensus 143 -~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 -SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred -CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 111245677888885 578888888999999998653
No 438
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=94.75 E-value=8 Score=42.35 Aligned_cols=234 Identities=13% Similarity=0.006 Sum_probs=114.4
Q ss_pred CCCEEEEEECCCcEEEEecCC--CeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCc-----------
Q 003177 571 DGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY----------- 636 (842)
Q Consensus 571 dg~~Lasgs~Dg~I~vwd~~t--~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~t~~~----------- 636 (842)
++++|+.|+.+|.. +.++.. .+....+ +...|+++...+..+.|++-+. ...++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly-~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLY-VLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceE-EEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 34689999998854 444554 3344433 5668999999988777666543 34599999842111
Q ss_pred ---eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----ceeeEE-----eecCCeeEEEEeCC--CCEE
Q 003177 637 ---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVF-----KCQSGATQMRFQPR--LGRI 702 (842)
Q Consensus 637 ---~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~----~~i~~~-----~~~~~i~~v~~sp~--g~~l 702 (842)
.......|......+........+++++....+|.++..... ...+.+ ..+..+..+..++. ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 011222344433333333322223334444566666544322 112211 11223333333332 4456
Q ss_pred EEEEcCCeEEEEECCC--CeE-----EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCc
Q 003177 703 LAAAIENYISILDVET--QVC-----RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK 775 (842)
Q Consensus 703 ~~~s~dg~I~IwDl~t--~~~-----~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~ 775 (842)
++|+..+...++++.. ... ............++...+++.+|+ +-|....+.|...... .....+. -...
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Ll-c~~~~~v~Vn~~G~~~-~r~~~l~-w~~~ 245 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLL-CYDEFGVFVNLYGKRR-SRNPILH-WEFM 245 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEE-EECcEEEEEeCCCCcc-ccceEEE-cCCc
Confidence 6666653444444432 100 000111110233344444555555 4444455555543111 1111111 1334
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccC
Q 003177 776 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH 813 (842)
Q Consensus 776 I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h 813 (842)
..++++.. ++|++... ..|.|+++.+++.+....+
T Consensus 246 p~~~~~~~--pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 246 PESFAYHS--PYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred ccEEEEEC--CEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 56667764 56777654 4599999999987744443
No 439
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.57 E-value=11 Score=43.02 Aligned_cols=110 Identities=12% Similarity=0.007 Sum_probs=65.9
Q ss_pred cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe-----EEEEEeC--CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003177 687 QSGATQMRFQPRLGRILAAAIENYISILDVETQV-----CRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 759 (842)
Q Consensus 687 ~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~-----~~~~l~~--h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s 759 (842)
...+..+.+.+++..++++ ..|.+..- ...+. ....... ....+.++.|.+++..+++|..|.+.+.. ..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~ 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DG 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CC
Confidence 4567889998887766555 55655443 33332 1222221 12358899999999988888888766653 34
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003177 760 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 800 (842)
Q Consensus 760 ~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iw 800 (842)
++..........-...++.+.|.++++ .++.+.+|.|.-|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 422222221122345677888877654 6777777876655
No 440
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.43 E-value=18 Score=45.04 Aligned_cols=158 Identities=18% Similarity=0.189 Sum_probs=95.5
Q ss_pred CCCCCeEEEEEc---C----CCCEEEEEECCCcEEEEecC------C---------CeEEEEecc---CCCCeEEEEEcC
Q 003177 558 ASTSKVESCHFS---P----DGKLLATGGHDKKAVLWCTE------S---------FTVKSTLEE---HTQWITDVRFSP 612 (842)
Q Consensus 558 gH~~~V~sv~fS---p----dg~~Lasgs~Dg~I~vwd~~------t---------~~~~~~l~~---h~~~I~~l~fsp 612 (842)
.-..+|..|+|. . ..++|++= ....+.|+... . ..++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 355678888888 2 22355544 44567777611 1 123334432 234677899998
Q ss_pred -CCCEEEEEeCCCeEEEEEcCCCC----ceeeEeecCcc----------ceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 003177 613 -SLSRLATSSADRTVRVWDTENPD----YSLRTFTGHST----------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 677 (842)
Q Consensus 613 -dg~~Latgs~Dg~I~IWDl~t~~----~~i~~~~~h~~----------~V~sl~fspdg~~llasgs~Dg~I~vwDl~t 677 (842)
+...||+....|...||++.... ..+.....+.+ .-..|.|.++.+.+| .|+ ...+.++|+++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence 46689999999999999992111 11111111222 234788887766666 444 56799999998
Q ss_pred Cceee---EEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 678 GSCAG---VFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 718 (842)
Q Consensus 678 ~~~i~---~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t 718 (842)
..... .......|..+.-++.....+..-....|..+|+..
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 76533 222345688888888633333333447788888876
No 441
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.41 E-value=14 Score=43.60 Aligned_cols=244 Identities=12% Similarity=0.095 Sum_probs=120.3
Q ss_pred cCCCCEEEEEECCCcEEEEecCCCe---EEEEeccC-CCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeeEeec
Q 003177 569 SPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEH-TQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG 643 (842)
Q Consensus 569 Spdg~~Lasgs~Dg~I~vwd~~t~~---~~~~l~~h-~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~t~~~~i~~~~~ 643 (842)
..++..++.+..+|.++...+.... .+..+ +. .....++++..++ .+|+.||.-|.=.++.+......+.....
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence 4467788899999999888766433 12222 22 4556677777654 47777877554444444433322222223
Q ss_pred CccceEEEEEcCC---CC-------cEEEEEe--CCCcEEEEECCCCceee-----EEeecCCeeEEEEeCC----CCEE
Q 003177 644 HSTTVMSLDFHPS---KE-------DLLCSCD--NNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPR----LGRI 702 (842)
Q Consensus 644 h~~~V~sl~fspd---g~-------~llasgs--~Dg~I~vwDl~t~~~i~-----~~~~~~~i~~v~~sp~----g~~l 702 (842)
.-++|.++++.+. +. .++++++ .+|.+++..- |-... .....+ +..+-..+. ..++
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~l 374 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELASSELPG-VTGIWTLKLSSSDHSYL 374 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeeccCCCC-ceEEEEeeecCCCceEE
Confidence 4578888888532 12 4555544 4677877632 22222 222222 444332222 3455
Q ss_pred EEEEcCCeEEEEECC---CCeEEEEEe--CC---CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeec-CC
Q 003177 703 LAAAIENYISILDVE---TQVCRLKLQ--GH---KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC-TG 773 (842)
Q Consensus 703 ~~~s~dg~I~IwDl~---t~~~~~~l~--~h---~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~-~~ 773 (842)
+++.. ..-.++.+. ..+.+..+. +. ...+.+-.+. +..++=.....|++.+.... ........ .+
T Consensus 375 v~S~~-~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~ 448 (504)
T PF10433_consen 375 VLSFP-NETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAG 448 (504)
T ss_dssp EEEES-SEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS
T ss_pred EEEcC-CceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCC
Confidence 55554 444455442 233332221 11 1123222332 55565566667889887665 44444332 33
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEc-----cCCCCeeEEEEeC
Q 003177 774 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-----AHDKLVSSLAAST 824 (842)
Q Consensus 774 ~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~-----~h~~~V~sla~sp 824 (842)
..|.+.+.. +.+++++..++.+.++.+...... ... .....|.|+...|
T Consensus 449 ~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 449 SIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp ---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 444444443 357888888889999988877665 211 2567888888776
No 442
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.34 E-value=9.4 Score=41.47 Aligned_cols=165 Identities=9% Similarity=0.085 Sum_probs=95.5
Q ss_pred cEEEEECCCCceeeEEeecC-------CeeEEEEeCCC-----CEEEEEEc-CCeEEEEECCCCeEEEEEeCCC------
Q 003177 669 EIRYWSINNGSCAGVFKCQS-------GATQMRFQPRL-----GRILAAAI-ENYISILDVETQVCRLKLQGHK------ 729 (842)
Q Consensus 669 ~I~vwDl~t~~~i~~~~~~~-------~i~~v~~sp~g-----~~l~~~s~-dg~I~IwDl~t~~~~~~l~~h~------ 729 (842)
.|.+||+.+++.++.+..+. .+..+.+.... .+++.+.. .+.|.|||+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 67789999999888887643 35667777632 34444444 3689999999987766554321
Q ss_pred -------------CCEEEEEEcC---CCCEEEEEeCCeEEEEEcCC-----CCCc------eeEEEeecCCCceEEEEEe
Q 003177 730 -------------NQVHSVCWNT---SGEYLASVSDELVRVWSIGS-----GSKG------ECIHELSCTGNKFHSCVFH 782 (842)
Q Consensus 730 -------------~~V~sl~~sp---dg~~LasgsDg~I~IwDl~s-----~~~~------~~i~~~~~~~~~I~sv~~s 782 (842)
..+..++.+| +++.|+-..=...++|.+.+ .... ..+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 2355666655 66677766622233443322 1110 1122222223456678899
Q ss_pred CCCCEEEEEEcCCeEEEEECCC-----Ce-EEEEccC-CCCeeEEEEeC--CCCEEEEEe
Q 003177 783 PTFPSLLVIGCYETLELWNMTE-----NK-TLTLSAH-DKLVSSLAAST--VNGMVASAS 833 (842)
Q Consensus 783 pdg~~L~sgs~dg~I~Iwdl~~-----~~-~~~~~~h-~~~V~sla~sp--dg~~Lasgs 833 (842)
++|..+++--..+.|..|+..+ .- .+..... -..+.++.+.+ +|.+.+.+.
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 9988777777888999999886 21 2222222 35778999998 777666554
No 443
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.29 E-value=0.12 Score=39.82 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCe
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 593 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~ 593 (842)
...|.+++|+|...+||.|+.+|.|.||.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 443
No 444
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.26 E-value=1.6 Score=51.92 Aligned_cols=124 Identities=11% Similarity=0.111 Sum_probs=79.9
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEec-cCCCCeEEEEEc--CCCCEEEEEeCCCeE
Q 003177 550 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADRTV 626 (842)
Q Consensus 550 ~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~-~h~~~I~~l~fs--pdg~~Latgs~Dg~I 626 (842)
+.....+...-..+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|. |++..+++.+....|
T Consensus 19 w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v 98 (631)
T PF12234_consen 19 WLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHV 98 (631)
T ss_pred EEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEE
Confidence 33444444444556666666656555555555689999999887554332 456789999995 589999999999999
Q ss_pred EEEEcC-----CCC---ceeeE--eecCc-cceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 003177 627 RVWDTE-----NPD---YSLRT--FTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 676 (842)
Q Consensus 627 ~IWDl~-----t~~---~~i~~--~~~h~-~~V~sl~fspdg~~llasgs~Dg~I~vwDl~ 676 (842)
.+|.-. +.. ..++. +..|+ .+|.+..|.++|. ++ +++ ++.+.|+|-.
T Consensus 99 ~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 99 LLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDKW 156 (631)
T ss_pred EEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECCC
Confidence 998532 111 11221 23344 5789999999975 33 232 4578887643
No 445
>PHA02790 Kelch-like protein; Provisional
Probab=93.90 E-value=1.4 Score=51.62 Aligned_cols=142 Identities=7% Similarity=-0.024 Sum_probs=66.4
Q ss_pred CCCEEEEEECCC-----cEEEEecCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEEcCCCCcee-eE
Q 003177 571 DGKLLATGGHDK-----KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSL-RT 640 (842)
Q Consensus 571 dg~~Lasgs~Dg-----~I~vwd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D--g~I~IWDl~t~~~~i-~~ 640 (842)
++.++++|+.++ .+..||..+.+-... +.........+. -++...+.|+.+ ..+..||..++.... ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 355666676543 467788776543321 111111122222 266777777754 357888876544311 11
Q ss_pred eecCccceEEEEEcCCCCcEEEEEeCCC---cEEEEECCCCceeeEEeecCCee-EEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 641 FTGHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENYISILDV 716 (842)
Q Consensus 641 ~~~h~~~V~sl~fspdg~~llasgs~Dg---~I~vwDl~t~~~i~~~~~~~~i~-~v~~sp~g~~l~~~s~dg~I~IwDl 716 (842)
+.........+.+ ++.+.+.|+.++ .+..||.++.+-...-....+.. ..+..-++..+++| |.+.+||.
T Consensus 349 l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp 422 (480)
T PHA02790 349 LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCE 422 (480)
T ss_pred CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecC
Confidence 1111111112222 244666766543 46778887654333211111111 11112233344444 45778888
Q ss_pred CCCe
Q 003177 717 ETQV 720 (842)
Q Consensus 717 ~t~~ 720 (842)
++.+
T Consensus 423 ~~~~ 426 (480)
T PHA02790 423 SSNT 426 (480)
T ss_pred CCCc
Confidence 7653
No 446
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=93.86 E-value=22 Score=44.90 Aligned_cols=168 Identities=14% Similarity=0.108 Sum_probs=92.5
Q ss_pred cEEEEECCCCceeeEEee--cCCeeEEEEeC---------CCCEEEEEEc---------CCeEEEEECCC-----CeE--
Q 003177 669 EIRYWSINNGSCAGVFKC--QSGATQMRFQP---------RLGRILAAAI---------ENYISILDVET-----QVC-- 721 (842)
Q Consensus 669 ~I~vwDl~t~~~i~~~~~--~~~i~~v~~sp---------~g~~l~~~s~---------dg~I~IwDl~t-----~~~-- 721 (842)
.|.+.+..+++.+..+.. ...+.++...- ...++++|.. .|.++|||+-. +++
T Consensus 1005 ~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t 1084 (1366)
T KOG1896|consen 1005 SIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFT 1084 (1366)
T ss_pred eeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcc
Confidence 455555555555544443 23344444321 1345666653 47899998742 211
Q ss_pred ---EEEE--eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003177 722 ---RLKL--QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 796 (842)
Q Consensus 722 ---~~~l--~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~ 796 (842)
++.+ +.-++.|..+|=. +| +|+++..-+|.||++........+.-+ .-++......--.++|++|.-...
T Consensus 1085 ~~KlKel~~eE~KGtVsavceV-~G-~l~~~~GqKI~v~~l~r~~~ligVaFi---D~~~yv~s~~~vknlIl~gDV~ks 1159 (1366)
T KOG1896|consen 1085 KNKLKELYIEEQKGTVSAVCEV-RG-HLLSSQGQKIIVRKLDRDSELIGVAFI---DLPLYVHSMKVVKNLILAGDVMKS 1159 (1366)
T ss_pred cceeeeeehhhcccceEEEEEe-cc-EEEEccCcEEEEEEeccCCcceeeEEe---ccceeEEehhhhhhheehhhhhhc
Confidence 1111 2345677766532 34 456666778999999544322222221 223333333444567777777777
Q ss_pred EEEEECCCC-eEEEEc---cCCCCeeEEEEeCCCC--EEEEEeCCCcEEEc
Q 003177 797 LELWNMTEN-KTLTLS---AHDKLVSSLAASTVNG--MVASASHDKCVKIW 841 (842)
Q Consensus 797 I~Iwdl~~~-~~~~~~---~h~~~V~sla~spdg~--~Lasgs~DG~V~IW 841 (842)
|.+.-.... ..+.+. ...-.+.++.|--||. .++++..|++|++|
T Consensus 1160 isfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1160 ISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred eEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEE
Confidence 776655432 222222 2233577778877776 67788899999886
No 447
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.81 E-value=0.036 Score=65.78 Aligned_cols=163 Identities=9% Similarity=0.094 Sum_probs=90.0
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEecC--CCeEE-----EEeccCCCCeEEEEEcC---CCCEEEEEeCC
Q 003177 555 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE--SFTVK-----STLEEHTQWITDVRFSP---SLSRLATSSAD 623 (842)
Q Consensus 555 ~l~gH~~~V~sv~fSp-dg~~Lasgs~Dg~I~vwd~~--t~~~~-----~~l~~h~~~I~~l~fsp---dg~~Latgs~D 623 (842)
.++|..+.|-.+.|-. +...++ -.-|.+.|||++ .|+.. ..+......+.-|.|.| +..++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 4567777888888854 222222 233678899876 34332 22222333445555554 66778888889
Q ss_pred CeEEEEEcCCCCceeeEeecCccceEEEE-----------EcCCCCcEEEEEeCCCcEEEEECC-----CCceeeEEeec
Q 003177 624 RTVRVWDTENPDYSLRTFTGHSTTVMSLD-----------FHPSKEDLLCSCDNNSEIRYWSIN-----NGSCAGVFKCQ 687 (842)
Q Consensus 624 g~I~IWDl~t~~~~i~~~~~h~~~V~sl~-----------fspdg~~llasgs~Dg~I~vwDl~-----t~~~i~~~~~~ 687 (842)
++|++.++++.. ...+.+|...+..++ ++|||. +|+....||.+++|.+- ...|....+.+
T Consensus 205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence 999998877543 245556777666554 467765 55566667777766542 22344444433
Q ss_pred CCeeEEEEeCCCC-----------EEEEEEc-CCeEEEEECCCCeEE
Q 003177 688 SGATQMRFQPRLG-----------RILAAAI-ENYISILDVETQVCR 722 (842)
Q Consensus 688 ~~i~~v~~sp~g~-----------~l~~~s~-dg~I~IwDl~t~~~~ 722 (842)
.+-..+||..+.. ++++++. +..+++|.....+|.
T Consensus 282 d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 282 DKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3322333322111 1233332 346777776665555
No 448
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.75 E-value=3.2 Score=47.98 Aligned_cols=268 Identities=14% Similarity=0.021 Sum_probs=130.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceee
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 639 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~ 639 (842)
.+|..+.+.-.| .|.+|+.|| +..||..+++.+..-.... ..|..+..+-.+ .|.+|+++| |++.+.+.....-.
T Consensus 165 ~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn~ 240 (671)
T COG3292 165 TPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASNW 240 (671)
T ss_pred ccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccccc
Confidence 458888888877 455677666 6778878877765543333 566666555554 466777776 77777665222111
Q ss_pred EeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec---CCeeEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 640 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDV 716 (842)
Q Consensus 640 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~---~~i~~v~~sp~g~~l~~~s~dg~I~IwDl 716 (842)
...-....|..+.-...|. +..|+.+|..+.---+.+-.+...+.+ +.|.++....+ +.+-+++.++.+.+-+.
T Consensus 241 ~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~d-GsLWv~t~~giv~~~~a 317 (671)
T COG3292 241 GPMLPSGNILLLVQDAQGE--LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTD-GSLWVGTYGGIVRYLTA 317 (671)
T ss_pred CCCCcchheeeeecccCCC--EEEeecccceeEecCCCCccccccccCCccccccceeeccC-CCEeeeccCceEEEecc
Confidence 1112234455555444443 445665554433222222222222221 23444444444 34556666666655443
Q ss_pred CCCeEEEEEeCCCCC-EEEEEEcC---CCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003177 717 ETQVCRLKLQGHKNQ-VHSVCWNT---SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 792 (842)
Q Consensus 717 ~t~~~~~~l~~h~~~-V~sl~~sp---dg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs 792 (842)
. ......+...++. +-.++..| +.......+-+.+.+-+-.++.....++.. ....|+.+++..++. +..++
T Consensus 318 ~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~--Rg~nit~~~~d~~g~-lWlgs 393 (671)
T COG3292 318 D-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQL--RGMNITTTLEDSRGR-LWLGS 393 (671)
T ss_pred h-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeec--cccccchhhhccCCc-EEEEe
Confidence 2 1111111111111 11111111 011111111222333333333211122222 234566666766554 66777
Q ss_pred cCCeEEEEECCC-CeEEEEc--cCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 793 CYETLELWNMTE-NKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 793 ~dg~I~Iwdl~~-~~~~~~~--~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
..+-+..|+..+ +..+... ...+.|..|--.|+++ |..|+.+|.++.
T Consensus 394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 765566777666 3333222 2356788888888888 777888887753
No 449
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.70 E-value=8.5 Score=42.36 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=48.5
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCcee---eEEe-ecCCe--eEEEEeCCCCEEEEEEc-----CCeEEEEECCCCeE
Q 003177 658 EDLLCSCDNN-----SEIRYWSINNGSCA---GVFK-CQSGA--TQMRFQPRLGRILAAAI-----ENYISILDVETQVC 721 (842)
Q Consensus 658 ~~llasgs~D-----g~I~vwDl~t~~~i---~~~~-~~~~i--~~v~~sp~g~~l~~~s~-----dg~I~IwDl~t~~~ 721 (842)
+.+++.|+.+ ..+..||+.+.+.. ..+. ..... .+++. -++..++.|+. ...+..||+.+.+-
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 4466666644 35677777765531 1111 11111 22222 24455555554 24688899886532
Q ss_pred E--EEEeCCCCCEEEEEEcCCCCEEEEEe-CC----eEEEEEcCCC
Q 003177 722 R--LKLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSG 760 (842)
Q Consensus 722 ~--~~l~~h~~~V~sl~~spdg~~Lasgs-Dg----~I~IwDl~s~ 760 (842)
. ..+... ......+..-++++++.|+ ++ .+.+||..+.
T Consensus 152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2 222211 1112222233566666665 43 3568888765
No 450
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=93.70 E-value=14 Score=44.27 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=67.7
Q ss_pred EEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEEEEeC-CCCCEEEEEEcC------CCCEEEEEe--CC-
Q 003177 683 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG-HKNQVHSVCWNT------SGEYLASVS--DE- 750 (842)
Q Consensus 683 ~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~--~~~~l~~-h~~~V~sl~~sp------dg~~Lasgs--Dg- 750 (842)
.++....+..+.|..++..+++....|.|.+||...+. .+..+.. +...+.--+|-+ ...++++.+ ++
T Consensus 125 ~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~ 204 (670)
T PF10395_consen 125 ELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNS 204 (670)
T ss_pred EEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCC
Confidence 44557889999999999999999999999999993321 1112211 222221112322 233444433 22
Q ss_pred --eEEEEEcCCCCCceeEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 751 --LVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 751 --~I~IwDl~s~~~~~~i~~~~---~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
.++++.+.... ..+..+. .+......+.|.-....|+.- .+++|.+|++..-+..
T Consensus 205 k~~ykL~~l~~~~--~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~ 264 (670)
T PF10395_consen 205 KLSYKLISLSNES--SSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQ 264 (670)
T ss_pred cEEEEEEEeccCC--cceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEE
Confidence 68888882211 2222222 222223333333323334444 6779999999877655
No 451
>PHA02790 Kelch-like protein; Provisional
Probab=93.52 E-value=3.7 Score=48.10 Aligned_cols=144 Identities=8% Similarity=-0.017 Sum_probs=68.4
Q ss_pred CcEEEEEeCC--CcEEEEECCCCceeeEEeecCCee-EEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEE--EeCCC
Q 003177 658 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIE---NYISILDVETQVCRLK--LQGHK 729 (842)
Q Consensus 658 ~~llasgs~D--g~I~vwDl~t~~~i~~~~~~~~i~-~v~~sp~g~~l~~~s~d---g~I~IwDl~t~~~~~~--l~~h~ 729 (842)
+.+.+.|+.+ ..+..||..+.+-...-....... .....-++..+++|+.+ ..+..||.++..-... +....
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r 398 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH 398 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence 4566677643 457888876654332222221211 12223345566666654 3477888876543221 11111
Q ss_pred CCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCC
Q 003177 730 NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTE 804 (842)
Q Consensus 730 ~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d-----g~I~Iwdl~~ 804 (842)
.. .+++ .-++++.+.| |.+.+||..+.. ...+..+.. .....-+..-++...++||.+ ..|..||..+
T Consensus 399 ~~-~~~~-~~~~~IYv~G--G~~e~ydp~~~~-W~~~~~m~~--~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 399 YK-SCAL-VFGRRLFLVG--RNAEFYCESSNT-WTLIDDPIY--PRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred cc-ceEE-EECCEEEEEC--CceEEecCCCCc-EeEcCCCCC--CccccEEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence 11 1222 2355555555 356778886641 122222211 111112223355555666543 3677888777
Q ss_pred CeEE
Q 003177 805 NKTL 808 (842)
Q Consensus 805 ~~~~ 808 (842)
++..
T Consensus 472 ~~W~ 475 (480)
T PHA02790 472 YSWN 475 (480)
T ss_pred CeEE
Confidence 6654
No 452
>PLN02153 epithiospecifier protein
Probab=93.47 E-value=15 Score=40.83 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=33.3
Q ss_pred CCCEEEEEECC-------CcEEEEecCCCeEEEEeccC----CC---CeEEEEEcCCCCEEEEEeCC-----CeEEEEEc
Q 003177 571 DGKLLATGGHD-------KKAVLWCTESFTVKSTLEEH----TQ---WITDVRFSPSLSRLATSSAD-----RTVRVWDT 631 (842)
Q Consensus 571 dg~~Lasgs~D-------g~I~vwd~~t~~~~~~l~~h----~~---~I~~l~fspdg~~Latgs~D-----g~I~IWDl 631 (842)
++++++.|+.+ ..+.+||+.+.+-.. +... .. ....+.+ ++++++.|+.+ ..|.+||+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSI-APANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEE-cCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 35566666653 357888887754332 2111 00 1222233 45677777753 35788888
Q ss_pred CCCC
Q 003177 632 ENPD 635 (842)
Q Consensus 632 ~t~~ 635 (842)
.+..
T Consensus 109 ~t~~ 112 (341)
T PLN02153 109 VKNE 112 (341)
T ss_pred CCCE
Confidence 7654
No 453
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.47 E-value=2.3 Score=40.24 Aligned_cols=118 Identities=12% Similarity=0.079 Sum_probs=77.5
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-------eeeEeecCccceEEEEEcC----CCCcEEEEEeCCCcEEEEE
Q 003177 606 TDVRFSPSLSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWS 674 (842)
Q Consensus 606 ~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~-------~i~~~~~h~~~V~sl~fsp----dg~~llasgs~Dg~I~vwD 674 (842)
..-+|......|+.++.-|.|.|++...... .+. +......|++|+-.+ ++..+|+.|+ ...|..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~-~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDIS-FLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCcee-EEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 3446666667888888999999998764321 122 333456778876544 2345666666 67899999
Q ss_pred CCCCceeeEEeecCCeeEEEEeCC---CCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003177 675 INNGSCAGVFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLKL 725 (842)
Q Consensus 675 l~t~~~i~~~~~~~~i~~v~~sp~---g~~l~~~s~dg~I~IwDl~t~~~~~~l 725 (842)
+....-+......+++.++.+-.- ..-++..+.+..|.-||.+..+...+.
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 998877766667788888877432 233555555667777777665555543
No 454
>PLN02193 nitrile-specifier protein
Probab=93.40 E-value=20 Score=41.91 Aligned_cols=171 Identities=8% Similarity=-0.009 Sum_probs=80.6
Q ss_pred CcEEEEEeCC-------CcEEEEECCCCceeeEEe---ecC--CeeEEEEeCCCCEEEEEEcC-----CeEEEEECCCCe
Q 003177 658 EDLLCSCDNN-------SEIRYWSINNGSCAGVFK---CQS--GATQMRFQPRLGRILAAAIE-----NYISILDVETQV 720 (842)
Q Consensus 658 ~~llasgs~D-------g~I~vwDl~t~~~i~~~~---~~~--~i~~v~~sp~g~~l~~~s~d-----g~I~IwDl~t~~ 720 (842)
+.+++.|+.+ ..+.+||+.+.+-...-. ... ........-++..++.|+.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4466666642 247788887754332111 011 01111122234455555543 468889988764
Q ss_pred EEEEEeC----CCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCceeEEEeecC----CCc-eEEEEEeCCC
Q 003177 721 CRLKLQG----HKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCT----GNK-FHSCVFHPTF 785 (842)
Q Consensus 721 ~~~~l~~----h~~~V~sl~~spdg~~Lasgs-Dg-----~I~IwDl~s~~~~~~i~~~~~~----~~~-I~sv~~spdg 785 (842)
-...-.. ....-.+++. -++++++.|+ ++ .+.+||+.+.. - ..+... ... -..++. -++
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~---W-~~~~~~~~~~~~R~~~~~~~-~~g 329 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK---W-FHCSTPGDSFSIRGGAGLEV-VQG 329 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE---E-EeCCCCCCCCCCCCCcEEEE-ECC
Confidence 3321110 1111122222 2455555554 32 46778877641 1 111110 001 112222 355
Q ss_pred CEEEEEEcC----CeEEEEECCCCeEEEEccC-----CCCeeEEEEeCCCCEEEEEeCC
Q 003177 786 PSLLVIGCY----ETLELWNMTENKTLTLSAH-----DKLVSSLAASTVNGMVASASHD 835 (842)
Q Consensus 786 ~~L~sgs~d----g~I~Iwdl~~~~~~~~~~h-----~~~V~sla~spdg~~Lasgs~D 835 (842)
+.+++++.+ ..|.+||+.+.+...+... .....++ ..-++++++.|+.+
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~ 387 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEI 387 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCcc
Confidence 666666654 3699999998877654322 1111222 23356777777753
No 455
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=6.3 Score=47.09 Aligned_cols=174 Identities=11% Similarity=0.037 Sum_probs=83.8
Q ss_pred CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceee--EeecCccceEEEEEcCCCCc
Q 003177 582 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKED 659 (842)
Q Consensus 582 g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~--~~~~h~~~V~sl~fspdg~~ 659 (842)
-.|+||++. |..+..+.-....+..+.|+.+.. |++...+|+++||++........ .+......|..+.|..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 458888854 455544433334788999997654 55666999999999874322110 011122234444443343
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEEee-c-CCe--eEEEEeCCCC---EEEEEEcCCeEEEEECCCC-eEEEEEeCCCCC
Q 003177 660 LLCSCDNNSEIRYWSINNGSCAGVFKC-Q-SGA--TQMRFQPRLG---RILAAAIENYISILDVETQ-VCRLKLQGHKNQ 731 (842)
Q Consensus 660 llasgs~Dg~I~vwDl~t~~~i~~~~~-~-~~i--~~v~~sp~g~---~l~~~s~dg~I~IwDl~t~-~~~~~l~~h~~~ 731 (842)
+++ -..+|.+.+.+-......+.... + ... .|-...+++. .++-....-...++-.+.. .....+......
T Consensus 140 Vav-lt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 140 VAV-LTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred eEE-EecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCce
Confidence 332 22344444433221211222211 0 111 2222222211 1111110001111111111 111122222356
Q ss_pred EEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003177 732 VHSVCWNTSGEYLASVS-DELVRVWSIGSG 760 (842)
Q Consensus 732 V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 760 (842)
+..+..||+.++|+--. +|.|.+-++...
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 78899999999999887 899988887765
No 456
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.35 E-value=1 Score=51.07 Aligned_cols=142 Identities=12% Similarity=0.121 Sum_probs=92.6
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCC-------EEEEEEcCCeEEEEECCC-CeEEE--EE
Q 003177 656 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-------RILAAAIENYISILDVET-QVCRL--KL 725 (842)
Q Consensus 656 dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~-------~l~~~s~dg~I~IwDl~t-~~~~~--~l 725 (842)
+...++..++....++-.|++.|+.+.....+..+ -+.|.|... .-++|-.+..|.-.|.+- +..+. ..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 33444555666778899999999999999987777 778888532 245666677777777663 22221 11
Q ss_pred eC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 726 QG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 802 (842)
Q Consensus 726 ~~--h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl 802 (842)
+. ......|..-. ..-|+++++ .|.|++||.-.. ..-..+.+.+..|..+..+.+|.+|++.+. ..|.+.|+
T Consensus 557 KdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~---rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 557 KDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGK---RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred hhccccccccccccc-cCceEEEecCCCceeeehhhcc---hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 11 12222333322 345777777 899999996443 233445667788999999999998776554 46777776
Q ss_pred C
Q 003177 803 T 803 (842)
Q Consensus 803 ~ 803 (842)
.
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 3
No 457
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.34 E-value=1.9 Score=51.45 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=46.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEc--CCCCcEEEEEeCCCcEEEEEC
Q 003177 603 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCDNNSEIRYWSI 675 (842)
Q Consensus 603 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fs--pdg~~llasgs~Dg~I~vwDl 675 (842)
..+.-+.-+.-++..++-+....+.|||...+...........+.|.+++|. |++..++++| ....|.+|.-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEc
Confidence 3444455554444444444556899999987664444333557889999996 6777666555 4677777754
No 458
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=3.1 Score=42.32 Aligned_cols=176 Identities=13% Similarity=0.071 Sum_probs=99.7
Q ss_pred CCCEEEEEeC--CCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCe
Q 003177 613 SLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 690 (842)
Q Consensus 613 dg~~Latgs~--Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i 690 (842)
++.++.+.+. ...|++||++++......-.. ...+..=-...-++.+....-.+|.-.++|.++.+++..+..++.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4556666554 347999999987653322221 1222221122224445555667889999999999999988877766
Q ss_pred eEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE----EEeC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003177 691 TQMRFQPRLGRILAAAIENYISILDVETQVCRL----KLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 764 (842)
Q Consensus 691 ~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~----~l~~-h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 764 (842)
..++. ++..++.+.....+..-|.++-.... ++.+ .-..++.+.|- +|.+++-.- +..|...|..+++...
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 65554 44557777766777777776543322 2222 11233344443 565555544 5555555666552211
Q ss_pred eE---------EEeecCCCceEEEEEeCCCCEEEEEE
Q 003177 765 CI---------HELSCTGNKFHSCVFHPTFPSLLVIG 792 (842)
Q Consensus 765 ~i---------~~~~~~~~~I~sv~~spdg~~L~sgs 792 (842)
.+ .....+.+..+.+++.|+...++..+
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 11 11122345677889999886555544
No 459
>PRK10350 hypothetical protein; Provisional
Probab=93.14 E-value=0.31 Score=44.65 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=13.3
Q ss_pred cccchhhhhh-hHHHHHHHHHHHHHHHH
Q 003177 69 EKHSESAASY-IESQVIKAREQQQQQQQ 95 (842)
Q Consensus 69 ~~~~~~~~~y-~~~~q~~~~~qQqqqqq 95 (842)
.........| +.+++..+.+.|.+|++
T Consensus 22 ~~NNPnqpGY~ipSQQRmQtqMQ~QQ~q 49 (145)
T PRK10350 22 TLNNPNQPGYQIPSQQRMQTQMQTQQIQ 49 (145)
T ss_pred ccCCCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 3344455567 55655544444444333
No 460
>PLN02193 nitrile-specifier protein
Probab=93.12 E-value=12 Score=43.62 Aligned_cols=192 Identities=6% Similarity=-0.022 Sum_probs=89.7
Q ss_pred CCCEEEEEeCC-------CeEEEEEcCCCCceeeEeec-Ccc--ce-EEEEEcCCCCcEEEEEeCC-----CcEEEEECC
Q 003177 613 SLSRLATSSAD-------RTVRVWDTENPDYSLRTFTG-HST--TV-MSLDFHPSKEDLLCSCDNN-----SEIRYWSIN 676 (842)
Q Consensus 613 dg~~Latgs~D-------g~I~IWDl~t~~~~i~~~~~-h~~--~V-~sl~fspdg~~llasgs~D-----g~I~vwDl~ 676 (842)
++.+++.|+.+ ..+.+||+.+.........+ ... .. .+++.. ++.+++.|+.+ ..+.+||+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECC
Confidence 34556666643 24778888765432211111 000 01 112222 34566666654 358889988
Q ss_pred CCceeeEEee---cCC--eeEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEEe-----CCCCCEEEEEEcCCC
Q 003177 677 NGSCAGVFKC---QSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSG 741 (842)
Q Consensus 677 t~~~i~~~~~---~~~--i~~v~~sp~g~~l~~~s~d-----g~I~IwDl~t~~~~~~l~-----~h~~~V~sl~~spdg 741 (842)
+.+-...... ..+ -.+++ .-++..++.|+.+ ..+..||+.+.+-...-. ..... .+++. -++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~-~~g 329 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV-VQG 329 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE-ECC
Confidence 7654332211 111 11222 2244555566543 346788887654321110 01111 12222 256
Q ss_pred CEEEEEe-C----CeEEEEEcCCCCCceeEEEee-cCCCceEEEEEeCCCCEEEEEEcC--------------CeEEEEE
Q 003177 742 EYLASVS-D----ELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTFPSLLVIGCY--------------ETLELWN 801 (842)
Q Consensus 742 ~~Lasgs-D----g~I~IwDl~s~~~~~~i~~~~-~~~~~I~sv~~spdg~~L~sgs~d--------------g~I~Iwd 801 (842)
++++.++ + ..|.+||+.+.. ...+.... .........+..-++..+++|+.. ..+.+||
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D 408 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD 408 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEE
Confidence 6666655 4 468999988752 11111110 011111122223345566666642 2488999
Q ss_pred CCCCeEEEE
Q 003177 802 MTENKTLTL 810 (842)
Q Consensus 802 l~~~~~~~~ 810 (842)
+.+.+...+
T Consensus 409 ~~t~~W~~~ 417 (470)
T PLN02193 409 TETLQWERL 417 (470)
T ss_pred cCcCEEEEc
Confidence 988876643
No 461
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.00 E-value=0.065 Score=63.77 Aligned_cols=97 Identities=13% Similarity=0.157 Sum_probs=55.1
Q ss_pred CCcEEEEecCCCeE-EEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC--CC----ceeeEeecCccceEEEE
Q 003177 581 DKKAVLWCTESFTV-KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN--PD----YSLRTFTGHSTTVMSLD 652 (842)
Q Consensus 581 Dg~I~vwd~~t~~~-~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~t--~~----~~i~~~~~h~~~V~sl~ 652 (842)
.+-|++-+..+.-. ...+++..+.|-.+.|-. +...++ -.-|.+.|||++- ++ ..++........+.-|.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 45677776554321 123467778888888854 222222 2346788998763 22 22333334445556666
Q ss_pred EcCC--CCcEEEEEeCCCcEEEEECCCCc
Q 003177 653 FHPS--KEDLLCSCDNNSEIRYWSINNGS 679 (842)
Q Consensus 653 fspd--g~~llasgs~Dg~I~vwDl~t~~ 679 (842)
|+|- .+-+++.+..+++|++..+.+..
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~ 216 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRAL 216 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHH
Confidence 6652 23466677778888887776543
No 462
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=92.96 E-value=27 Score=42.32 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=81.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCc----EEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC------CCe
Q 003177 556 IPASTSKVESCHFSPDGKLLATGGHDKK----AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA------DRT 625 (842)
Q Consensus 556 l~gH~~~V~sv~fSpdg~~Lasgs~Dg~----I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~------Dg~ 625 (842)
...+...+..+.|+|+|.+++..+.++. +++.+.. + .+..+...|....|++++..++.... |+.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~ 129 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGG 129 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccCCc
Confidence 3456677889999999999998874432 3333433 2 33445667888899998888776211 222
Q ss_pred -------EEEEEcCCC-Cc----------eeeEeecCccceEEEEEcCCCCcEEEEEeCC---C---cEEEEECCCCcee
Q 003177 626 -------VRVWDTENP-DY----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S---EIRYWSINNGSCA 681 (842)
Q Consensus 626 -------I~IWDl~t~-~~----------~i~~~~~h~~~V~sl~fspdg~~llasgs~D---g---~I~vwDl~t~~~i 681 (842)
+.+|....+ .. ...........+....+++++..++.+...+ . ...++...++...
T Consensus 130 ~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (620)
T COG1506 130 DHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELE 209 (620)
T ss_pred eeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceE
Confidence 333333222 11 1112223344566666666555443332222 1 2333333455555
Q ss_pred eEEeecCCeeEEEEeCCCCEEEEEEc
Q 003177 682 GVFKCQSGATQMRFQPRLGRILAAAI 707 (842)
Q Consensus 682 ~~~~~~~~i~~v~~sp~g~~l~~~s~ 707 (842)
........+..+.+.++++.++..+.
T Consensus 210 ~~~~~~~~~~~~~~~~~gk~~~~~~~ 235 (620)
T COG1506 210 SLTPGEGSISKLAFDADGKSIALLGT 235 (620)
T ss_pred EEcCCCceeeeeeeCCCCCeeEEecc
Confidence 55555566888889998886555443
No 463
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.86 E-value=11 Score=42.71 Aligned_cols=13 Identities=8% Similarity=0.135 Sum_probs=9.3
Q ss_pred cEEEEECCCCcee
Q 003177 669 EIRYWSINNGSCA 681 (842)
Q Consensus 669 ~I~vwDl~t~~~i 681 (842)
.|.+||..+.+-.
T Consensus 190 ~v~~YD~~t~~W~ 202 (376)
T PRK14131 190 EVLSYDPSTNQWK 202 (376)
T ss_pred eEEEEECCCCeee
Confidence 5888998776544
No 464
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.81 E-value=0.033 Score=62.38 Aligned_cols=148 Identities=12% Similarity=0.119 Sum_probs=105.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceee-
Q 003177 604 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG- 682 (842)
Q Consensus 604 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~- 682 (842)
......|.+.+.-++.++.+..|..||-.... ..-...++....++|..+++.+++.+...+.+.+||+.+...-.
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq~---~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQV---ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhcce---ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 34456677877778888889899999865422 12222445677889999998888888899999999998543211
Q ss_pred EEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEE
Q 003177 683 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV 754 (842)
Q Consensus 683 ~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~I 754 (842)
.+.....-.-+.|++....++.+...|.+.||...+.+.+.....|...+++++|.+.+..+..+.|..+.+
T Consensus 113 E~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v 184 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSV 184 (615)
T ss_pred hccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHH
Confidence 111111122267888888888998899999999988776666655889999999998887666554554443
No 465
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.75 E-value=5 Score=41.21 Aligned_cols=141 Identities=19% Similarity=0.224 Sum_probs=81.2
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC--C---cEEEE---ECC--CCceee--
Q 003177 615 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--S---EIRYW---SIN--NGSCAG-- 682 (842)
Q Consensus 615 ~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D--g---~I~vw---Dl~--t~~~i~-- 682 (842)
+.|+.+...+.|.+|++............--+.|..+.++..|++++..=.+. . .+|+| ... ....+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 45555566788999999854443333333448899999999988666433222 1 45554 222 111111
Q ss_pred ---------------------EEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE------EEEEe----CCCC-
Q 003177 683 ---------------------VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RLKLQ----GHKN- 730 (842)
Q Consensus 683 ---------------------~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~------~~~l~----~h~~- 730 (842)
.+.....+.+++..|-.+.|++|+. +.+.+|.+..... +..|. .|..
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 1112345678888887777777664 6778887654432 11111 1111
Q ss_pred -CEEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003177 731 -QVHSVCWNTSGEYLASVSDELVRVWSIG 758 (842)
Q Consensus 731 -~V~sl~~spdg~~LasgsDg~I~IwDl~ 758 (842)
....+++ -+.|+|..++..++++.+.
T Consensus 188 ~~p~~v~i--c~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 188 FKPTQVAI--CEGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred ceEEEEEE--EeeEEEEecCCEEEEEEEe
Confidence 2334444 3678888888888888753
No 466
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.74 E-value=16 Score=40.61 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=23.2
Q ss_pred eEEEEECCCCeEEEEccCCCCe-eEEEEeCCCCEEEEEeCCC
Q 003177 796 TLELWNMTENKTLTLSAHDKLV-SSLAASTVNGMVASASHDK 836 (842)
Q Consensus 796 ~I~Iwdl~~~~~~~~~~h~~~V-~sla~spdg~~Lasgs~DG 836 (842)
.+.+||..+.+........... ...+..-++++++.|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 4678888776654332222211 2223445788888888653
No 467
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.72 E-value=22 Score=40.67 Aligned_cols=269 Identities=10% Similarity=0.093 Sum_probs=131.9
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEc---C-CCCEEEEEECCCcEEE
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS---P-DGKLLATGGHDKKAVL 586 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fS---p-dg~~Lasgs~Dg~I~v 586 (842)
...+..||.+|.++++.+.......+ ..+.+ ..-..+|..+.+- + .....+..-+-.++.|
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~--~lllE-------------~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~v 101 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE--DLLLE-------------TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSV 101 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc--cEEEE-------------EecCCcEEEEEeccccCCCCcceEEEecCCEEEE
Confidence 35778899999999998744321111 00111 1122445555442 2 2222333356677888
Q ss_pred EecCC--Ce-------EEEEeccCC--CCeEEEEEcC----C-CCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEE
Q 003177 587 WCTES--FT-------VKSTLEEHT--QWITDVRFSP----S-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 650 (842)
Q Consensus 587 wd~~t--~~-------~~~~l~~h~--~~I~~l~fsp----d-g~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~s 650 (842)
|.+.. +. .+..+..|. .....+++-| . ..+|++-+.||.+.+|+-+.-. ...+....--...
T Consensus 102 Y~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~~llPgP 179 (418)
T PF14727_consen 102 YSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPDFLLPGP 179 (418)
T ss_pred EEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCCCCCCcC
Confidence 87621 11 112222232 2223333322 2 4678899999999999977522 2222222223345
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCC--------------------Cc---eeeEEeecCCeeEEEEeC---CCCEEEE
Q 003177 651 LDFHPSKEDLLCSCDNNSEIRYWSINN--------------------GS---CAGVFKCQSGATQMRFQP---RLGRILA 704 (842)
Q Consensus 651 l~fspdg~~llasgs~Dg~I~vwDl~t--------------------~~---~i~~~~~~~~i~~v~~sp---~g~~l~~ 704 (842)
++|.+..+ .|++++.+..|..|.... ++ ..+++.....+..+.... ....+++
T Consensus 180 l~Y~~~tD-sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~Ivv 258 (418)
T PF14727_consen 180 LCYCPRTD-SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVV 258 (418)
T ss_pred eEEeecCC-EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEE
Confidence 67777655 455777777777775421 11 123333444444444332 3333444
Q ss_pred EEcCCeEEEEECCCCeEEEEEeCCCCCEEEEE-E----cCCCC----EEEEEeCCeEEEEEcCCCCCceeEEEeecCCCc
Q 003177 705 AAIENYISILDVETQVCRLKLQGHKNQVHSVC-W----NTSGE----YLASVSDELVRVWSIGSGSKGECIHELSCTGNK 775 (842)
Q Consensus 705 ~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~-~----spdg~----~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~ 775 (842)
-+ +..+.+++.. |......+ ......|++ | ..++. +++++.++.+.||.=. ..+........+
T Consensus 259 Lg-er~Lf~l~~~-G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~-----~L~WsA~l~~~P 330 (418)
T PF14727_consen 259 LG-ERSLFCLKDN-GSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT-----TLVWSAQLPHVP 330 (418)
T ss_pred Ee-cceEEEEcCC-CeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC-----eEEEecCCCCCC
Confidence 33 4556666553 44443333 222222222 2 11222 4444448999988632 222222222222
Q ss_pred e--EEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003177 776 F--HSCVFHPTFPSLLVIGCYETLELWNMTEN 805 (842)
Q Consensus 776 I--~sv~~spdg~~L~sgs~dg~I~Iwdl~~~ 805 (842)
| ....|..-...|++-+.+|.|.+-=+-+.
T Consensus 331 Val~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 331 VALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 2 22233333456777788888777665443
No 468
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.58 E-value=3.4 Score=49.77 Aligned_cols=101 Identities=9% Similarity=0.147 Sum_probs=66.6
Q ss_pred CCcEEEEEeCCCcEEEEECCC-------C-------------ceeeEEeecCCeeEEEEe--CCCCEEEEEEcCCeEEEE
Q 003177 657 KEDLLCSCDNNSEIRYWSINN-------G-------------SCAGVFKCQSGATQMRFQ--PRLGRILAAAIENYISIL 714 (842)
Q Consensus 657 g~~llasgs~Dg~I~vwDl~t-------~-------------~~i~~~~~~~~i~~v~~s--p~g~~l~~~s~dg~I~Iw 714 (842)
+..+|+.|.+||.|.+|.+++ . ++...+..+..+..++++ ...+.|++++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 456888999999999997621 0 122334445667888888 666777777777777776
Q ss_pred ECCCC--e-EEEEEeCCCCCEEEEEEcCCC---C---EEEEEe-CCeEEEEEc
Q 003177 715 DVETQ--V-CRLKLQGHKNQVHSVCWNTSG---E---YLASVS-DELVRVWSI 757 (842)
Q Consensus 715 Dl~t~--~-~~~~l~~h~~~V~sl~~spdg---~---~Lasgs-Dg~I~IwDl 757 (842)
-.... + ....-..|...|.+|+|.++. . .|++++ .|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 54431 1 111111256688999997643 2 666777 998888887
No 469
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=92.53 E-value=22 Score=43.17 Aligned_cols=146 Identities=12% Similarity=0.154 Sum_probs=79.6
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCe--EEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEE-----eCCCc-
Q 003177 598 LEEHTQWITDVRFSPSLSRLATSSADRT--VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-----DNNSE- 669 (842)
Q Consensus 598 l~~h~~~I~~l~fspdg~~Latgs~Dg~--I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasg-----s~Dg~- 669 (842)
...+...+..+.|+|++..++..+.++. ..+|-+.... .+..+...|....|++.+..+++.. ..++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~ 130 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGD 130 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEEEecccccccCCce
Confidence 3456777889999999999998874432 3444443321 2334556678888888887666511 11222
Q ss_pred ------EEEEECCCC-ceee------------EEeecCCeeEEEEeCCCCEEEEEEcCC-------eEEEEECCCCeEEE
Q 003177 670 ------IRYWSINNG-SCAG------------VFKCQSGATQMRFQPRLGRILAAAIEN-------YISILDVETQVCRL 723 (842)
Q Consensus 670 ------I~vwDl~t~-~~i~------------~~~~~~~i~~v~~sp~g~~l~~~s~dg-------~I~IwDl~t~~~~~ 723 (842)
+.+|....+ +... .......+....+.+++..++....+. ...++...++ .+.
T Consensus 131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 209 (620)
T COG1506 131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-ELE 209 (620)
T ss_pred eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-ceE
Confidence 333333322 1111 111123355556666556655554433 1233333233 333
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEe
Q 003177 724 KLQGHKNQVHSVCWNTSGEYLASVS 748 (842)
Q Consensus 724 ~l~~h~~~V~sl~~spdg~~Lasgs 748 (842)
.+......+..+.|.++++.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~gk~~~~~~ 234 (620)
T COG1506 210 SLTPGEGSISKLAFDADGKSIALLG 234 (620)
T ss_pred EEcCCCceeeeeeeCCCCCeeEEec
Confidence 4444556688899999998555543
No 470
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.51 E-value=18 Score=39.15 Aligned_cols=194 Identities=9% Similarity=0.068 Sum_probs=108.2
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEECC------CC-ceeeEEee------cCCeeEEEEeCCCC------------E
Q 003177 647 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------NG-SCAGVFKC------QSGATQMRFQPRLG------------R 701 (842)
Q Consensus 647 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~------t~-~~i~~~~~------~~~i~~v~~sp~g~------------~ 701 (842)
.-+.|+++|.+. +.++....+...+||.. .. ..+..+.. ....+.+.|+.... .
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 357899999875 55566667889999987 12 22223321 23456666664332 3
Q ss_pred EEEEEcCCeEEEEECCCCeE-----EEEEeC-CCCC-EEEEEEcC--CCCEEEEEe--CCeEEEEEcCCCCCceeEEEee
Q 003177 702 ILAAAIENYISILDVETQVC-----RLKLQG-HKNQ-VHSVCWNT--SGEYLASVS--DELVRVWSIGSGSKGECIHELS 770 (842)
Q Consensus 702 l~~~s~dg~I~IwDl~t~~~-----~~~l~~-h~~~-V~sl~~sp--dg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~ 770 (842)
++.+++||+|.-|...-... ...+.. .... ...+++.. .+.+|+.+. .++|.|||-.-.... .-..+.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~-~~g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP-LPGSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc-CCCCcc
Confidence 67888999999998543221 122221 1223 34555543 467888777 889999985432100 000000
Q ss_pred -----cCCCc-----------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE--ccCCCCeeEEEEeC------CC
Q 003177 771 -----CTGNK-----------FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL--SAHDKLVSSLAAST------VN 826 (842)
Q Consensus 771 -----~~~~~-----------I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~--~~h~~~V~sla~sp------dg 826 (842)
..-.+ |+-..-.++...=+.+..-|.|-+||....-+.++ .+.-...+.|+..| .+
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 00011 11111122222233344556899999876655444 23445567777755 35
Q ss_pred CEEEEEeCCCcEEEcC
Q 003177 827 GMVASASHDKCVKIWK 842 (842)
Q Consensus 827 ~~Lasgs~DG~V~IWd 842 (842)
.+|+---.||+|.+||
T Consensus 262 ~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 262 ALLVGNFGDGTINAYD 277 (336)
T ss_pred CeEEeecCCceeEEec
Confidence 5676666799999886
No 471
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=92.51 E-value=0.036 Score=59.06 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=0.0
Q ss_pred hhhhccccCCCCC
Q 003177 122 QQQRRDSTQHLND 134 (842)
Q Consensus 122 q~q~~~~~~~~~~ 134 (842)
|+++..+++++||
T Consensus 372 Q~qQ~qQq~qmng 384 (468)
T PF11498_consen 372 QQQQQQQQHQMNG 384 (468)
T ss_dssp -------------
T ss_pred HHHhhhhhhhccc
Confidence 3444444555675
No 472
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.51 E-value=1.6 Score=48.90 Aligned_cols=104 Identities=11% Similarity=0.149 Sum_probs=72.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC--C
Q 003177 728 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM--T 803 (842)
Q Consensus 728 h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl--~ 803 (842)
..++|.++.|++|.+.|++-. |++|.+++...... ....++.......|..++|+.. .-++.....| +.+|.+ .
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 567999999999999999987 99999999844321 1222333334556888999887 4466666665 555544 3
Q ss_pred CCeEEEEccCCCCeeEEEEeCCCCEEEEEe
Q 003177 804 ENKTLTLSAHDKLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 804 ~~~~~~~~~h~~~V~sla~spdg~~Lasgs 833 (842)
...+.....|...|+-..|+++.+.+..++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeec
Confidence 333445667888899999999888655443
No 473
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=92.50 E-value=36 Score=42.53 Aligned_cols=261 Identities=11% Similarity=0.065 Sum_probs=134.7
Q ss_pred EEEcCCCCEEEEEECCCcEEEEecCCCeE---------EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC---C
Q 003177 566 CHFSPDGKLLATGGHDKKAVLWCTESFTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---N 633 (842)
Q Consensus 566 v~fSpdg~~Lasgs~Dg~I~vwd~~t~~~---------~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---t 633 (842)
-.+-++...+++-+.+|.|+-.+..+... ...++. .+.+..+........|+..+.+|.+...+.. .
T Consensus 490 edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~ 568 (800)
T TIGR01063 490 EDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPE 568 (800)
T ss_pred hhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcC
Confidence 34455666788888899888876544321 111222 2345555555556667777778877666542 1
Q ss_pred CC-----cee---eEeecCccceEEEEEcC-CCCcEEEEEeCCCcEEEEECCCCce-------eeEEeecCCeeEEEEeC
Q 003177 634 PD-----YSL---RTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGSC-------AGVFKCQSGATQMRFQP 697 (842)
Q Consensus 634 ~~-----~~i---~~~~~h~~~V~sl~fsp-dg~~llasgs~Dg~I~vwDl~t~~~-------i~~~~~~~~i~~v~~sp 697 (842)
.. ..+ ..+.....-|.++.+.. +...+++..+.+|.++-.++..... ...+...+.+..+....
T Consensus 569 ~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~~ 648 (800)
T TIGR01063 569 ASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTS 648 (800)
T ss_pred CCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEeC
Confidence 11 011 11222223344455332 1233566788899999887754221 12222334455555555
Q ss_pred CCCEEEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------
Q 003177 698 RLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------ 761 (842)
Q Consensus 698 ~g~~l~~~s~dg~I~IwDl~t---------~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~------ 761 (842)
....++..+..|.+..+.+.. |.....+. ....|.++....++.+++..+ .|.++...+..-.
T Consensus 649 ~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~ 727 (800)
T TIGR01063 649 GDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG 727 (800)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC
Confidence 556788888888777665432 22222232 233455554444454555555 8877777654211
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEE
Q 003177 762 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 831 (842)
Q Consensus 762 ~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Las 831 (842)
.......+......+..+....+...++..+.+|.+..++...-.. .......|..+.... +..++.
T Consensus 728 kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~--~gR~a~GVk~i~L~~-~D~vv~ 794 (800)
T TIGR01063 728 KGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSE--QGRNTQGVRLIRLDE-DDKLVS 794 (800)
T ss_pred cceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCc--cccCCCCeeeeeeCC-CCEEEE
Confidence 1122222333334454544444455678888888777777654221 112233466666643 334443
No 474
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.27 E-value=0.41 Score=36.85 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003177 602 TQWITDVRFSPSLSRLATSSADRTVRVWDTE 632 (842)
Q Consensus 602 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 632 (842)
...|.+++|+|...+||.++.||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
No 475
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.05 E-value=34 Score=41.20 Aligned_cols=158 Identities=11% Similarity=0.115 Sum_probs=90.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee--eEeecCcc------ceEEEEEcCCCCcEEEEEe-C--CCc
Q 003177 601 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHST------TVMSLDFHPSKEDLLCSCD-N--NSE 669 (842)
Q Consensus 601 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i--~~~~~h~~------~V~sl~fspdg~~llasgs-~--Dg~ 669 (842)
-.+.|..|.|..+++.+++....|.|.+||...+.... ..-..+.. .|.....-...+.+++.+. . .-.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 36779999999999999999999999999993322111 11111222 2222221112233444444 1 235
Q ss_pred EEEEEC--CCCceeeEE---eecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC-----C-CCEEEEEEc
Q 003177 670 IRYWSI--NNGSCAGVF---KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-----K-NQVHSVCWN 738 (842)
Q Consensus 670 I~vwDl--~t~~~i~~~---~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h-----~-~~V~sl~~s 738 (842)
++++.+ +...+...- ..........|....+.++.- .++.|.+|++...+...++.-. . ..+.++. .
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~-~ 285 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK-P 285 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee-c
Confidence 677777 333333221 122233444455445555555 7789999999877655544321 1 2344443 2
Q ss_pred CCCCEEEEEeCCeEEEEEcCCC
Q 003177 739 TSGEYLASVSDELVRVWSIGSG 760 (842)
Q Consensus 739 pdg~~LasgsDg~I~IwDl~s~ 760 (842)
|..+.++.+.++.|++.|+.-.
T Consensus 286 ~s~nRvLLs~~nkIyLld~~~~ 307 (670)
T PF10395_consen 286 PSPNRVLLSVNNKIYLLDLKFE 307 (670)
T ss_pred CCCCeEEEEcCCEEEEEeehhh
Confidence 4556666677889999998754
No 476
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.02 E-value=23 Score=39.21 Aligned_cols=189 Identities=9% Similarity=0.075 Sum_probs=0.0
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCc------EEEEECCC----------CceeeEEeecCCee--------EEEEeCCCCE
Q 003177 646 TTVMSLDFHPSKEDLLCSCDNNSE------IRYWSINN----------GSCAGVFKCQSGAT--------QMRFQPRLGR 701 (842)
Q Consensus 646 ~~V~sl~fspdg~~llasgs~Dg~------I~vwDl~t----------~~~i~~~~~~~~i~--------~v~~sp~g~~ 701 (842)
+.+..|.+.+++..++ +.+++|. +..+++.. ...+......+... .+++.+++.+
T Consensus 20 GGlSgl~~~~~~~~~~-avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFY-AVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEE-EEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Q ss_pred EEEEEcC------CeEEEEECCCCeEEEEE---------------eCCCCCEEEEEEcCCCCEEEEEeCCe---------
Q 003177 702 ILAAAIE------NYISILDVETQVCRLKL---------------QGHKNQVHSVCWNTSGEYLASVSDEL--------- 751 (842)
Q Consensus 702 l~~~s~d------g~I~IwDl~t~~~~~~l---------------~~h~~~V~sl~~spdg~~LasgsDg~--------- 751 (842)
+++.-.+ ..|..++.. +.....+ ......+.+++++|+|..|+++.++.
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Q ss_pred ------EEEEEcCCCC----CceeEEEeec-----CCCceEEEEEeCCCCEEEEEEc-----CCeEEEEECCCCeEEEEc
Q 003177 752 ------VRVWSIGSGS----KGECIHELSC-----TGNKFHSCVFHPTFPSLLVIGC-----YETLELWNMTENKTLTLS 811 (842)
Q Consensus 752 ------I~IwDl~s~~----~~~~i~~~~~-----~~~~I~sv~~spdg~~L~sgs~-----dg~I~Iwdl~~~~~~~~~ 811 (842)
++|+.+.... .......+.. ....+..+.+.+++.+|+.==. ...++||.+.-.......
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~at~~~ 257 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSDATDVP 257 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEcccccccc
Q ss_pred cC-------------------------CCCeeEEEEeC--CCCE-EEEEeCCC
Q 003177 812 AH-------------------------DKLVSSLAAST--VNGM-VASASHDK 836 (842)
Q Consensus 812 ~h-------------------------~~~V~sla~sp--dg~~-Lasgs~DG 836 (842)
.. ...+..|+|.| +|+. |+..++|.
T Consensus 258 ~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnN 310 (326)
T PF13449_consen 258 GIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNN 310 (326)
T ss_pred cccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCC
No 477
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.02 E-value=11 Score=41.39 Aligned_cols=107 Identities=8% Similarity=0.090 Sum_probs=52.3
Q ss_pred CCCEEEEEECC-----CcEEEEecCCCeE---EEEeccCCCCe--EEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCC
Q 003177 571 DGKLLATGGHD-----KKAVLWCTESFTV---KSTLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTENPD 635 (842)
Q Consensus 571 dg~~Lasgs~D-----g~I~vwd~~t~~~---~~~l~~h~~~I--~~l~fspdg~~Latgs~-----Dg~I~IWDl~t~~ 635 (842)
++.+++.|+.+ ..+..||+.+.+. ...+..-..+. .+++.. ++++.+.|+. ...+.+||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 56677777764 3566777766543 12221111111 122222 4566666664 2468888988765
Q ss_pred ceeeE-eecCccceEEEEEcCCCCcEEEEEeCCC----cEEEEECCCCce
Q 003177 636 YSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSC 680 (842)
Q Consensus 636 ~~i~~-~~~h~~~V~sl~fspdg~~llasgs~Dg----~I~vwDl~t~~~ 680 (842)
..... +.... .....+...+ +.+++.|+.++ .+.+||+.+.+-
T Consensus 151 W~~~~~~p~~~-r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPGEP-RVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCCCC-CCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCee
Confidence 42211 11111 1111222223 44666776553 356888887654
No 478
>PRK05560 DNA gyrase subunit A; Validated
Probab=91.91 E-value=42 Score=42.00 Aligned_cols=256 Identities=11% Similarity=0.056 Sum_probs=132.5
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCCeE---------EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC---CC
Q 003177 567 HFSPDGKLLATGGHDKKAVLWCTESFTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NP 634 (842)
Q Consensus 567 ~fSpdg~~Lasgs~Dg~I~vwd~~t~~~---------~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---t~ 634 (842)
.+-++...+++-+.+|.|+--.+.+... ...++.. +.+..+........|+..+..|.+....+. ..
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~ 571 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA 571 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence 3455667888888899888876544221 1112222 344444444556667777777877665442 21
Q ss_pred C-----cee---eEeecCccceEEEEEcCC-CCcEEEEEeCCCcEEEEECCCC-------ceeeEEeecCCeeEEEEeCC
Q 003177 635 D-----YSL---RTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPR 698 (842)
Q Consensus 635 ~-----~~i---~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vwDl~t~-------~~i~~~~~~~~i~~v~~sp~ 698 (842)
. ..+ ..+.....-|.++.+... ....++..+.+|.++..++... .....+...+.+..+.....
T Consensus 572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~ 651 (805)
T PRK05560 572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDG 651 (805)
T ss_pred CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCC
Confidence 1 111 112222233445555421 2335667888999988776432 22223333444555555555
Q ss_pred CCEEEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEEE-EEcCCCCEEEEEe-CCeEEEEEcCCC---C---
Q 003177 699 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSV-CWNTSGEYLASVS-DELVRVWSIGSG---S--- 761 (842)
Q Consensus 699 g~~l~~~s~dg~I~IwDl~t---------~~~~~~l~~h~~~V~sl-~~spdg~~Lasgs-Dg~I~IwDl~s~---~--- 761 (842)
...+++.+..|.+..+.+.. |.....+. ....|.++ .+.+++.+++..+ .|.++...+..- .
T Consensus 652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~ 730 (805)
T PRK05560 652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLR-EGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG 730 (805)
T ss_pred CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCC-CCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence 67788888888877766532 22222332 22334443 4444433555555 888777765321 1
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCC
Q 003177 762 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVN 826 (842)
Q Consensus 762 ~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg 826 (842)
.......+......+..+........+++.+.+|.+..++...-.. .......|..+.+..++
T Consensus 731 kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~~--~gR~a~GVk~I~L~~~D 793 (805)
T PRK05560 731 KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEISI--TGRNTQGVRLIRLDEGD 793 (805)
T ss_pred CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCCc--cccCCCCeeeEecCCCC
Confidence 1122222333234444443334445577778888777777654221 12233456666664433
No 479
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=91.91 E-value=33 Score=40.88 Aligned_cols=200 Identities=13% Similarity=0.068 Sum_probs=111.1
Q ss_pred CeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCC----cEEEEE
Q 003177 604 WITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWS 674 (842)
Q Consensus 604 ~I~~l~fspdg~~Latgs~-----Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg----~I~vwD 674 (842)
.+-.++.+||.+++|-+-+ --++++-|+.++......+. +...+++|..++..++++...++ .|....
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 3557788999988876533 33789999998775333332 34678999999998888877655 233333
Q ss_pred CCC--CceeeEEeecCC--eeEEEEeCCCCEEEEEEcC---CeEEEEECCCCe--EEEEEeCCCCCEEEEEEcCCCCEEE
Q 003177 675 INN--GSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE---NYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLA 745 (842)
Q Consensus 675 l~t--~~~i~~~~~~~~--i~~v~~sp~g~~l~~~s~d---g~I~IwDl~t~~--~~~~l~~h~~~V~sl~~spdg~~La 745 (842)
+.+ ..-...+..... ..++.-+....+|+....+ +.+++.+..... +........+.-..+. ..+.+++
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~e--h~~d~f~ 284 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVE--HGGDRFY 284 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeee--ecCcEEE
Confidence 333 222223332233 3334444455666665533 567777776542 2222221112112222 1233333
Q ss_pred E-Ee-CC-eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEE
Q 003177 746 S-VS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTL 808 (842)
Q Consensus 746 s-gs-Dg-~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg---~I~Iwdl~~~~~~ 808 (842)
. .. +| ..+|+..........-..+..|...+.--.++--..+|+....++ .|++++..++...
T Consensus 285 i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 285 ILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred EEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 3 33 55 556665544111123334555666666666666667777776655 7888888766544
No 480
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=91.89 E-value=4.7 Score=48.16 Aligned_cols=101 Identities=14% Similarity=0.232 Sum_probs=60.8
Q ss_pred eEEEEeCCCCEEEEEEcCC-----eEEEEECCC---CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC
Q 003177 691 TQMRFQPRLGRILAAAIEN-----YISILDVET---QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 762 (842)
Q Consensus 691 ~~v~~sp~g~~l~~~s~dg-----~I~IwDl~t---~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~ 762 (842)
..+.|-|.|..+++...|| .|.++..+. |+.-.. .+....+..++|+-....++.+..+.|.+|-..+-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy-- 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY-- 326 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHhhcceEEEEEccce--
Confidence 3488999999999887655 344444321 211111 12344567788887777777777889999987654
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003177 763 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 795 (842)
Q Consensus 763 ~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg 795 (842)
...-.....-..+.-+.|+|....-+.-...+
T Consensus 327 -hWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~ 358 (1243)
T COG5290 327 -HWYLKVERQIPGISYVKWHPEEKNTLLFRDGE 358 (1243)
T ss_pred -EEEEEEeecCCCcceeeeccccCcEEEEecCC
Confidence 33333333345566778888765433333333
No 481
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=4.9 Score=40.92 Aligned_cols=170 Identities=8% Similarity=-0.029 Sum_probs=89.8
Q ss_pred CcEEEEEeC--CCcEEEEECCCCceeeEEeec-CCeeEEEEeCCCCEEEEE-EcCCeEEEEECCCCeEEEEEeCCCCCEE
Q 003177 658 EDLLCSCDN--NSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQGHKNQVH 733 (842)
Q Consensus 658 ~~llasgs~--Dg~I~vwDl~t~~~i~~~~~~-~~i~~v~~sp~g~~l~~~-s~dg~I~IwDl~t~~~~~~l~~h~~~V~ 733 (842)
.+++.+.+. ...|++||+.+++.+...... ..+..--+..-+..+..- -.+|.-.+||.++.+++..+. ..+.-.
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGW 134 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGW 134 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcce
Confidence 356666553 447999999999888766654 223222222334444444 457888999999887776654 334445
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCce---EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003177 734 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF---HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 809 (842)
Q Consensus 734 sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I---~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~ 809 (842)
.++. |++-|..++ ..+++.-|-.+......+..- ..+.+| +.+.|- +|...+-.=.+..|...|..+|+++.
T Consensus 135 gLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT-~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 135 GLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVT-DDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeec--CCcceEeeCCceEEEecCHHHhhhcceEEEE-ECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 5553 444455444 556666665543221211111 111111 222222 22222222223345555555555542
Q ss_pred E-------------ccCCCCeeEEEEeCCC-CEEEEE
Q 003177 810 L-------------SAHDKLVSSLAASTVN-GMVASA 832 (842)
Q Consensus 810 ~-------------~~h~~~V~sla~spdg-~~Lasg 832 (842)
. ..|....+.|++.|++ ++++||
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 1 2345678899999987 556665
No 482
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=91.70 E-value=33 Score=40.38 Aligned_cols=226 Identities=13% Similarity=0.124 Sum_probs=110.7
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCc-eeeEeecC-ccceEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCceeeEEee
Q 003177 611 SPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGH-STTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKC 686 (842)
Q Consensus 611 spdg~~Latgs~Dg~I~IWDl~t~~~-~i~~~~~h-~~~V~sl~fspdg~~llasgs~--Dg~I~vwDl~t~~~i~~~~~ 686 (842)
..++..++.+..+|.++...+..... ......+. .....++++..++..+++.|+. |+.+..|....-+.+..+..
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 44677899999999999888775431 12222222 4456677777766345556654 55666667555666777777
Q ss_pred cCCeeEEEEeCC----CC------EEEEEEc---CCeEEEEECCCCeE--EEEEeCCCC--CEEEEEEcC-CCCEEEEEe
Q 003177 687 QSGATQMRFQPR----LG------RILAAAI---ENYISILDVETQVC--RLKLQGHKN--QVHSVCWNT-SGEYLASVS 748 (842)
Q Consensus 687 ~~~i~~v~~sp~----g~------~l~~~s~---dg~I~IwDl~t~~~--~~~l~~h~~--~V~sl~~sp-dg~~Lasgs 748 (842)
-++|.++++.+. .. .+++++. +|.++++.-.-+-. ........+ .++.+.... ++.||+.+.
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 788998888642 22 5666653 57888874332211 222222222 233333222 256777777
Q ss_pred CCeEEEEEcCCCCCceeEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-E-ccCCCCeeEEE
Q 003177 749 DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L-SAHDKLVSSLA 821 (842)
Q Consensus 749 Dg~I~IwDl~s~~~~~~i~~~-----~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~-~-~~h~~~V~sla 821 (842)
...-+|+.+......+.+... ......+.+..+. +..++=.+.. .|++.+...++... + ......|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 666667776421111222111 1111222222222 3334444433 58888877776662 2 23445555555
Q ss_pred EeCCCCEEEEEeCCCcEEEc
Q 003177 822 ASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 822 ~spdg~~Lasgs~DG~V~IW 841 (842)
+. +.+++.+-.++.+.++
T Consensus 456 ~~--~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 IN--DPQVLVALSGGELVYF 473 (504)
T ss_dssp ES--SSEEEEEE-TTEEEEE
T ss_pred EC--CCEEEEEEeCCcEEEE
Confidence 53 3455555566666544
No 483
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=91.52 E-value=0.15 Score=62.03 Aligned_cols=6 Identities=33% Similarity=0.296 Sum_probs=3.2
Q ss_pred cccccc
Q 003177 280 QQQKSL 285 (842)
Q Consensus 280 ~~~~~~ 285 (842)
+|.+||
T Consensus 2018 ~q~~~~ 2023 (2131)
T KOG4369|consen 2018 AQQSFM 2023 (2131)
T ss_pred cCCCCC
Confidence 345566
No 484
>PRK05560 DNA gyrase subunit A; Validated
Probab=91.49 E-value=36 Score=42.51 Aligned_cols=226 Identities=9% Similarity=0.027 Sum_probs=109.0
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCc--------eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEEC---CCC-
Q 003177 611 SPSLSRLATSSADRTVRVWDTENPDY--------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NNG- 678 (842)
Q Consensus 611 spdg~~Latgs~Dg~I~IWDl~t~~~--------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl---~t~- 678 (842)
-++...+++-+.+|.|+.-.+.+-.. ....+.. ...+..+........+++.. ..|.+....+ ...
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfT-s~Grv~~l~v~~iP~~~ 572 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFT-NRGRVYRLKVYEIPEAS 572 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEe-cCCeEEEEEhhhCcCCC
Confidence 34566788888888888776543110 0111121 23344444444445455444 4566555543 322
Q ss_pred -----ceee---EEeecCC-eeEEEEe--CCCCEEEEEEcCCeEEEEECCC-------CeEEEEEeCCCCCEEEEEEcCC
Q 003177 679 -----SCAG---VFKCQSG-ATQMRFQ--PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTS 740 (842)
Q Consensus 679 -----~~i~---~~~~~~~-i~~v~~s--p~g~~l~~~s~dg~I~IwDl~t-------~~~~~~l~~h~~~V~sl~~spd 740 (842)
..+. .+..... +..+.+. ++...++..+.+|.++-.++.. +.....+... ..+..+.....
T Consensus 573 ~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~-D~lv~v~~~~~ 651 (805)
T PRK05560 573 RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEG-DELIGVRLTDG 651 (805)
T ss_pred cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCC-CEEEEEEEeCC
Confidence 2221 1122223 3344444 2567899999999988776543 2233344433 33433333333
Q ss_pred -CCEEEEEeCCeEEEEEcCCCC------CceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEECCCC-------
Q 003177 741 -GEYLASVSDELVRVWSIGSGS------KGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNMTEN------- 805 (842)
Q Consensus 741 -g~~LasgsDg~I~IwDl~s~~------~~~~i~~~~~~~~~I~sv-~~spdg~~L~sgs~dg~I~Iwdl~~~------- 805 (842)
..+++..+.|.+..+.+..-. .+..+..+.. +..|..+ .+.++..+++..+..|.++...+..-
T Consensus 652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~ 730 (805)
T PRK05560 652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG 730 (805)
T ss_pred CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence 344444557766665543210 1122222322 3334443 44444447888899998877764321
Q ss_pred e-EE--EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 806 K-TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 806 ~-~~--~~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
+ .. .+....+.+..+........++..+.+|.+..
T Consensus 731 kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lr 768 (805)
T PRK05560 731 KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIR 768 (805)
T ss_pred CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEE
Confidence 1 11 22232334444333333344555666776543
No 485
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.33 E-value=4.4 Score=51.52 Aligned_cols=228 Identities=12% Similarity=0.093 Sum_probs=110.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCC-CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeE
Q 003177 562 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~-~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~ 640 (842)
....++|+|.-.++|.++.+|.|.+|-...-+.......-.. .+..+.|......+.....+..+.+|.......
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~---- 112 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG---- 112 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce----
Confidence 456689999999999999999999997654333322211110 122222222222333344455566665543221
Q ss_pred eecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe--ecCCeeEE-EEeCCCCEEEEEEcCCeEEEEECC
Q 003177 641 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQM-RFQPRLGRILAAAIENYISILDVE 717 (842)
Q Consensus 641 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~~v-~~sp~g~~l~~~s~dg~I~IwDl~ 717 (842)
.-+...+++....+--. .+.+ ..+.+++||..-.......- ........ .+.+..-.+..--.+-.-.++-+.
T Consensus 113 -~~~~~~~~~~~~~~~~~--~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 188 (993)
T KOG1983|consen 113 -VFLKQEITSFVTDPPPD--WLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISLP 188 (993)
T ss_pred -eecCCcceeccCCCCcc--hhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeecc
Confidence 11223344433332211 2234 77888888875322111110 00000000 000000000000000000111111
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003177 718 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 797 (842)
Q Consensus 718 t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I 797 (842)
... ..+.-+...+.+..+......+.....+.+.+|+.... ...+.+... ...+..++..++++..||.+
T Consensus 189 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~v~~h~Dgs~ 258 (993)
T KOG1983|consen 189 DAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASK---YVQSAYLPN-----GQLESRDGSHFVSYHTDGSY 258 (993)
T ss_pred ccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccc---cchhhcccc-----cccCccCCceEEEEEecCCE
Confidence 001 22223555666776666666666666777777776544 222222211 11227888999999999999
Q ss_pred EEEECCCCeE
Q 003177 798 ELWNMTENKT 807 (842)
Q Consensus 798 ~Iwdl~~~~~ 807 (842)
.+||...++.
T Consensus 259 ~fWd~s~g~~ 268 (993)
T KOG1983|consen 259 AFWDVSSGKL 268 (993)
T ss_pred EeeecCCCce
Confidence 9999988754
No 486
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.23 E-value=5.9 Score=47.29 Aligned_cols=167 Identities=10% Similarity=0.146 Sum_probs=82.9
Q ss_pred CcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE---EeCCCCCEEEEEEcCCCCE
Q 003177 668 SEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK---LQGHKNQVHSVCWNTSGEY 743 (842)
Q Consensus 668 g~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~---l~~h~~~V~sl~~spdg~~ 743 (842)
-.|+||++. |..+..+. .+..+..+.|+.+ ..|++...+|.+++|++-....... +......|..+.+..+|-.
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence 457777765 44443333 2457888899876 6788899999999999864322211 1112234555555456655
Q ss_pred EEEEeCCeEEEEEcCCCCCceeEEEeec---CCCceEEEEE-eCCCCEEEEEEcCC--eEEEEEC--CCCeEEEEccCCC
Q 003177 744 LASVSDELVRVWSIGSGSKGECIHELSC---TGNKFHSCVF-HPTFPSLLVIGCYE--TLELWNM--TENKTLTLSAHDK 815 (842)
Q Consensus 744 LasgsDg~I~IwDl~s~~~~~~i~~~~~---~~~~I~sv~~-spdg~~L~sgs~dg--~I~Iwdl--~~~~~~~~~~h~~ 815 (842)
+.+.++..+.+.++... .+..+.. ....-.+-.. .|.....+...-+- ...++-. .......+.....
T Consensus 142 vlt~~g~v~~i~~~~~~----~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 142 VLTVSGQVILINGVEEP----KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred EEecCCcEEEEcCCCcc----hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence 55555555555554432 1111111 1111111111 12111111111110 0111111 2222223333345
Q ss_pred CeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 816 LVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 816 ~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
.+..+.+||+.++|+.-..+|.|.+
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEE
Confidence 6777888888888888778887754
No 487
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.23 E-value=15 Score=41.49 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=20.5
Q ss_pred EEEEECCCCeEEEEccCC-CCeeEEEEeCCCCEEEEEeCC
Q 003177 797 LELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHD 835 (842)
Q Consensus 797 I~Iwdl~~~~~~~~~~h~-~~V~sla~spdg~~Lasgs~D 835 (842)
+.+||..+.+...+..-. ..-...+..-+++++++|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 567888877654222111 111122344467788888753
No 488
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.17 E-value=28 Score=38.59 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=15.6
Q ss_pred CCCEEEEEeCC-----------CeEEEEEcCCCCc
Q 003177 613 SLSRLATSSAD-----------RTVRVWDTENPDY 636 (842)
Q Consensus 613 dg~~Latgs~D-----------g~I~IWDl~t~~~ 636 (842)
++++.+.|+.+ ..+..||..+...
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W 97 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSW 97 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEE
Confidence 56777777753 2477788876543
No 489
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.13 E-value=0.023 Score=63.48 Aligned_cols=141 Identities=15% Similarity=0.276 Sum_probs=99.7
Q ss_pred eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEE
Q 003177 690 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH 767 (842)
Q Consensus 690 i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~ 767 (842)
.....|.+.+..+++++.+..+..||-...... ... ..+....++|+.++..++... .+.+++||+.+... .
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~l-e~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt----q 110 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVIL-ELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT----Q 110 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceec-ccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH----H
Confidence 345567788888999999999999986543222 222 345566789998888766654 88999999987522 1
Q ss_pred EeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc-CCCCeeEEEEeCCCCEEEEEeCCCc
Q 003177 768 ELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-HDKLVSSLAASTVNGMVASASHDKC 837 (842)
Q Consensus 768 ~~~~~-~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~-h~~~V~sla~spdg~~Lasgs~DG~ 837 (842)
.++.. ...-.-+.|++.+..++.+...+.+.||+..+.+.+...+ |...+++++|.+.+ +.+.++.|..
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence 11111 1111226899999999999999999999998877765555 99999999999876 4555655543
No 490
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.81 E-value=6.5 Score=37.33 Aligned_cols=111 Identities=9% Similarity=0.101 Sum_probs=71.5
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCe--------EEEEEeCCCCCEEEEEEcC-----CCCEEEEEeCCeEEEEEcCC
Q 003177 693 MRFQPRLGRILAAAIENYISILDVETQV--------CRLKLQGHKNQVHSVCWNT-----SGEYLASVSDELVRVWSIGS 759 (842)
Q Consensus 693 v~~sp~g~~l~~~s~dg~I~IwDl~t~~--------~~~~l~~h~~~V~sl~~sp-----dg~~LasgsDg~I~IwDl~s 759 (842)
-.|......|++++..|.|.|++..... .+..+. -...|++++--+ +...|+.|+...|..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 3455555678888899999999876432 233333 456777776433 45688999999999999987
Q ss_pred CCCceeEEEeecCCCceEEEEEe---CCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 760 GSKGECIHELSCTGNKFHSCVFH---PTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 760 ~~~~~~i~~~~~~~~~I~sv~~s---pdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
... +. ++.-...+.++.+- ....-++..+.+..|.-||....+..
T Consensus 83 N~d---~F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 83 NSD---LF-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred Cch---hh-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 632 11 12223556666553 22234666677778888887776655
No 491
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.71 E-value=18 Score=37.32 Aligned_cols=102 Identities=7% Similarity=0.146 Sum_probs=66.8
Q ss_pred CcEEEEEeCCCcEEEEECC--CCceeeEEeecCCeeEEEEeCCCCEEEEEEcCC------eEEEE-ECCC----CeEEE-
Q 003177 658 EDLLCSCDNNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN------YISIL-DVET----QVCRL- 723 (842)
Q Consensus 658 ~~llasgs~Dg~I~vwDl~--t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg------~I~Iw-Dl~t----~~~~~- 723 (842)
+.+|++ ...+.|.+|++. .......|..-+.|..+.++..|+++++--.+. .+++| +++. ..++.
T Consensus 29 d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVA-ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEE-cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 334443 557789999998 345667777778999999999999999977642 45554 2221 11111
Q ss_pred EEeCC---------------------CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003177 724 KLQGH---------------------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 760 (842)
Q Consensus 724 ~l~~h---------------------~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~ 760 (842)
.+-+| ...+.+++..|-.--|+.|+++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 22222 23566777777555566678888999987643
No 492
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.30 E-value=6.3 Score=44.97 Aligned_cols=142 Identities=11% Similarity=0.112 Sum_probs=91.3
Q ss_pred CCCEEE-EEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCC-------cEEEEEeCCCcEEEEECCC-CceeeE
Q 003177 613 SLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-------DLLCSCDNNSEIRYWSINN-GSCAGV 683 (842)
Q Consensus 613 dg~~La-tgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~-------~llasgs~Dg~I~vwDl~t-~~~i~~ 683 (842)
|.++|+ .+.....++--|++.++ .+..+.-|... -+.|.|..+ .-| .|-.+..|.-.|.+- |..+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGk-vveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGK-VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccce-eeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 444444 34445567777777765 36666666554 466666532 123 344466666666653 322222
Q ss_pred Eeec-----CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003177 684 FKCQ-----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 758 (842)
Q Consensus 684 ~~~~-----~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~ 758 (842)
.... ....+.. ....+++++++..|.|++||--.......+.+....|..|..+.+|++|++.+...+.+.|++
T Consensus 554 ~esKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 554 VESKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eeehhccccccccccc-cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 2221 1222222 234689999999999999997655555566777789999999999999999888899999886
Q ss_pred C
Q 003177 759 S 759 (842)
Q Consensus 759 s 759 (842)
-
T Consensus 633 i 633 (776)
T COG5167 633 I 633 (776)
T ss_pred c
Confidence 3
No 493
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.01 E-value=1.7 Score=45.19 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=53.2
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEEEEE-------e-------CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003177 695 FQPRLGRILAAAIENYISILDVETQVCRLKL-------Q-------GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 760 (842)
Q Consensus 695 ~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l-------~-------~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~ 760 (842)
+...+.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-++|..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4456789999999999999999998765432 1 2456788899999999999888899999987654
No 494
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.95 E-value=38 Score=38.15 Aligned_cols=180 Identities=13% Similarity=0.179 Sum_probs=103.4
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeC----CCCE--EEEEEc-C---CeEEEEECC--CCeEEEEEe
Q 003177 659 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP----RLGR--ILAAAI-E---NYISILDVE--TQVCRLKLQ 726 (842)
Q Consensus 659 ~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp----~g~~--l~~~s~-d---g~I~IwDl~--t~~~~~~l~ 726 (842)
.+++....++-+.+||+. |+.+..+.. +..+.+.+-. .+.. |++++. + +.|++|.+. ++.. ..+.
T Consensus 69 SlIigTdK~~GL~VYdL~-Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L-~~v~ 145 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLD-GKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL-TDVT 145 (381)
T ss_dssp -EEEEEETTTEEEEEETT-S-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE-EE-C
T ss_pred ceEEEEeCCCCEEEEcCC-CcEEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc-eEcC
Confidence 366677788899999998 666665542 4444443321 2333 444443 2 468888665 4432 2222
Q ss_pred C-------CCCCEEEEEEc--C-CCCEEEE-Ee-CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003177 727 G-------HKNQVHSVCWN--T-SGEYLAS-VS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLV 790 (842)
Q Consensus 727 ~-------h~~~V~sl~~s--p-dg~~Las-gs-Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~sv~~spdg~~L~s 790 (842)
. ....+..+|+- + +|.+.+. .. +|.+..|.+..... .+.++.+.. ...+..|+......+|++
T Consensus 146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYv 224 (381)
T PF02333_consen 146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYV 224 (381)
T ss_dssp BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEE
T ss_pred CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEE
Confidence 1 12346777763 3 4665444 44 88888888753222 245666664 558999999999999999
Q ss_pred EEcCCeEEEEECCC-----CeEEEEc---cCCCCeeEEEEeC--CC-CEEEEEe-CCCcEEEcC
Q 003177 791 IGCYETLELWNMTE-----NKTLTLS---AHDKLVSSLAAST--VN-GMVASAS-HDKCVKIWK 842 (842)
Q Consensus 791 gs~dg~I~Iwdl~~-----~~~~~~~---~h~~~V~sla~sp--dg-~~Lasgs-~DG~V~IWd 842 (842)
+-.+.-|.-|+.+. +..+... .....|..|++-. ++ .||+.++ .+++..||+
T Consensus 225 gEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 225 GEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred ecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 99998898888752 2223221 2345788888753 44 3555544 566777774
No 495
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.90 E-value=44 Score=38.74 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=38.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeE--EEEec-----cCCCCeEEEEEcCCC
Q 003177 559 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE-----EHTQWITDVRFSPSL 614 (842)
Q Consensus 559 H~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~--~~~l~-----~h~~~I~~l~fspdg 614 (842)
.-..-+.|+|.|||++|++--..|.|++++..++.. +..+. ........|+|+|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 344578899999998777665469999998655432 21121 135668999999874
No 496
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.85 E-value=46 Score=38.94 Aligned_cols=144 Identities=12% Similarity=0.053 Sum_probs=75.3
Q ss_pred CCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCcc---ceEEEEEcCC
Q 003177 580 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST---TVMSLDFHPS 656 (842)
Q Consensus 580 ~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~---~V~sl~fspd 656 (842)
....+.++|. .|..+..+.........+.+.++|.+++... ..++.+|+.. + .+..+.-... .-.++.+.|+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G-~-v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLG-K-VIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCC-C-EEEeeecCCcccccccccEECCC
Confidence 4456677774 4455544432222222267788898887665 7788888864 2 2333322221 1345677788
Q ss_pred CCcEEEEEe-------C-----CCcEEEEECCCCceeeEEee--------c--------------------CCeeEEEEe
Q 003177 657 KEDLLCSCD-------N-----NSEIRYWSINNGSCAGVFKC--------Q--------------------SGATQMRFQ 696 (842)
Q Consensus 657 g~~llasgs-------~-----Dg~I~vwDl~t~~~i~~~~~--------~--------------------~~i~~v~~s 696 (842)
|+.++++.. . .-.|..+| .+|+.+..+.. . -++.++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 876655541 0 12355666 66766655432 0 137889999
Q ss_pred CCCCEEEEEEcC-CeEEEEECCCCeEEEEEeCCC
Q 003177 697 PRLGRILAAAIE-NYISILDVETQVCRLKLQGHK 729 (842)
Q Consensus 697 p~g~~l~~~s~d-g~I~IwDl~t~~~~~~l~~h~ 729 (842)
+..+.|++.+.. ..|..+|.++++....+..+.
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 977777777775 589999999998888876553
No 497
>PRK13613 lipoprotein LpqB; Provisional
Probab=89.75 E-value=50 Score=39.78 Aligned_cols=190 Identities=9% Similarity=0.025 Sum_probs=104.0
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce----eeEEeecCCeeEEEEeCCCCEEEEEEc--CC--eEEEEECCC
Q 003177 647 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKCQSGATQMRFQPRLGRILAAAI--EN--YISILDVET 718 (842)
Q Consensus 647 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~----i~~~~~~~~i~~v~~sp~g~~l~~~s~--dg--~I~IwDl~t 718 (842)
.+.+++.++++..+.+.......+++..+..+.. .........++.-.|.+++ .+.++.. ++ .++++.- +
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~ 441 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-D 441 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-C
Confidence 6788999999876555544334666666543332 1122223456677777776 4444422 12 2555543 3
Q ss_pred CeEEE-EEeCCCC-CEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCce-eEE---EeecCCCceEEEEEeCCCCEE
Q 003177 719 QVCRL-KLQGHKN-QVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGE-CIH---ELSCTGNKFHSCVFHPTFPSL 788 (842)
Q Consensus 719 ~~~~~-~l~~h~~-~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~-~i~---~~~~~~~~I~sv~~spdg~~L 788 (842)
++... ......+ .|+.+..|+||..++... .+.|+|--+....... .+. .+......+.+++|..++..+
T Consensus 442 G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~ 521 (599)
T PRK13613 442 GEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQLV 521 (599)
T ss_pred CcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCEEE
Confidence 43321 1112333 799999999998777644 2566666554322221 121 222233458999999999866
Q ss_pred EEEEc-C--CeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCC-EEEEEeCCCcE
Q 003177 789 LVIGC-Y--ETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCV 838 (842)
Q Consensus 789 ~sgs~-d--g~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~-~Lasgs~DG~V 838 (842)
+.+.. . ..+++.++...... .....-..+..|+...+.+ .|+.+..++.|
T Consensus 522 Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 522 VLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred EEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 64532 2 34555566544332 2223455667777776665 55553445444
No 498
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.64 E-value=7.1 Score=47.16 Aligned_cols=158 Identities=11% Similarity=0.051 Sum_probs=0.0
Q ss_pred eEEeccCCCceEEeecCCCCCCCc----ccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcEEE
Q 003177 513 FVDDGSLDDNVESFLSPDDADPRD----RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVL 586 (842)
Q Consensus 513 ~l~~Gs~d~~v~~~~s~~~~~~~~----~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSp--dg~~Lasgs~Dg~I~v 586 (842)
|+| ....|.+|....-..... ................+.+.+ -...|+-|.... +...|+.+..||.|.+
T Consensus 53 FiA---~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 53 FIA---YQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred EEE---ECCEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCCeeEEEEEecCCeEEE
Q ss_pred Eec--------------------CCCeEEEEeccCCCCeEEEEEc--CCCCEEEEEeCCCeEEEEEcCC--CCceeeEee
Q 003177 587 WCT--------------------ESFTVKSTLEEHTQWITDVRFS--PSLSRLATSSADRTVRVWDTEN--PDYSLRTFT 642 (842)
Q Consensus 587 wd~--------------------~t~~~~~~l~~h~~~I~~l~fs--pdg~~Latgs~Dg~I~IWDl~t--~~~~i~~~~ 642 (842)
|.+ ..-++...+.... .+++++++ ...++||+++....|.||-+.. .+.....-.
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~-SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGA-SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEeecCC-ceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Q ss_pred cCccceEEEEEcCCC--Cc---EEEEEeCCCcEEEEEC
Q 003177 643 GHSTTVMSLDFHPSK--ED---LLCSCDNNSEIRYWSI 675 (842)
Q Consensus 643 ~h~~~V~sl~fspdg--~~---llasgs~Dg~I~vwDl 675 (842)
.|...|-+|+|.++. .. .+++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
No 499
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.40 E-value=39 Score=37.40 Aligned_cols=191 Identities=14% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCe------EEEEEcCC--------CCceeeEeecCccceE--------EEEEcCCCCcE
Q 003177 603 QWITDVRFSPSLSRLATSSADRT------VRVWDTEN--------PDYSLRTFTGHSTTVM--------SLDFHPSKEDL 660 (842)
Q Consensus 603 ~~I~~l~fspdg~~Latgs~Dg~------I~IWDl~t--------~~~~i~~~~~h~~~V~--------sl~fspdg~~l 660 (842)
+.+..|.+.+++..+++.+++|. +..+++.. .......+....+... +|++ +.+..+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecCCCE
Q ss_pred EEEEeCC------CcEEEEECCCCceeeEE----------------eecCCeeEEEEeCCCCEEEEEEcCC---------
Q 003177 661 LCSCDNN------SEIRYWSINNGSCAGVF----------------KCQSGATQMRFQPRLGRILAAAIEN--------- 709 (842)
Q Consensus 661 lasgs~D------g~I~vwDl~t~~~i~~~----------------~~~~~i~~v~~sp~g~~l~~~s~dg--------- 709 (842)
+++.-.+ ..|+.++.. |+.+..+ ..+.+...++++|++..|+++....
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Q ss_pred -------eEEEEECC-----CCeEEEEEeC-----CCCCEEEEEEcCCCCEEEEEeC-----C---eEEEEEcCCC----
Q 003177 710 -------YISILDVE-----TQVCRLKLQG-----HKNQVHSVCWNTSGEYLASVSD-----E---LVRVWSIGSG---- 760 (842)
Q Consensus 710 -------~I~IwDl~-----t~~~~~~l~~-----h~~~V~sl~~spdg~~LasgsD-----g---~I~IwDl~s~---- 760 (842)
.|..||.. .....+.+.. ....|..+.+.+++++|+.--+ + .|+..++...
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~at~~~ 257 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSDATDVP 257 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEcccccccc
Q ss_pred ------------CCceeEEEeecC---CCceEEEEEeC--CCCEEEEEEcCC
Q 003177 761 ------------SKGECIHELSCT---GNKFHSCVFHP--TFPSLLVIGCYE 795 (842)
Q Consensus 761 ------------~~~~~i~~~~~~---~~~I~sv~~sp--dg~~L~sgs~dg 795 (842)
-....+..+... ...+..++|.| +|...++..+|+
T Consensus 258 ~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDn 309 (326)
T PF13449_consen 258 GIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDN 309 (326)
T ss_pred cccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECC
No 500
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.37 E-value=6.6 Score=41.46 Aligned_cols=172 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 003177 667 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 746 (842)
Q Consensus 667 Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Las 746 (842)
.++|.++|-..-......-..+. +...+........+ --.-.+||+.+++..-..........+-.+.+||++|.+
T Consensus 8 ~~~v~~~d~t~~g~s~~~~~~~~---c~~~~~~~~~~~d~-~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~t 83 (243)
T PF07250_consen 8 NNKVIMFDRTNFGPSNISLPDGR---CRDNPEDNALKFDG-PAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQT 83 (243)
T ss_pred CCEEEEEeCCCcccccccCCCCc---cccCccccccccCc-eEEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEe
Q ss_pred Ee--CC--eEEEEEcCC---CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC--CCCeEEEE------
Q 003177 747 VS--DE--LVRVWSIGS---GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM--TENKTLTL------ 810 (842)
Q Consensus 747 gs--Dg--~I~IwDl~s---~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg-~I~Iwdl--~~~~~~~~------ 810 (842)
|+ +| .+++|+... ..........-......-+...-+||+.|++|+... +..+|.- .......+
T Consensus 84 GG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~ 163 (243)
T PF07250_consen 84 GGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQT 163 (243)
T ss_pred CCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhh
Q ss_pred --ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 811 --SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 811 --~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
......--.+...|+|++|+.+..+..|.=|+
T Consensus 164 ~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~ 197 (243)
T PF07250_consen 164 SDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYK 197 (243)
T ss_pred hccCccccCceEEEcCCCCEEEEEcCCcEEEeCC
Done!