Query 003177
Match_columns 842
No_of_seqs 1225 out of 2931
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 16:04:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 1.4E-41 4.9E-46 374.3 46.5 289 549-842 44-340 (340)
2 1vyh_C Platelet-activating fac 100.0 3.7E-42 1.3E-46 389.5 41.8 284 554-842 102-408 (410)
3 3ow8_A WD repeat-containing pr 100.0 6.5E-41 2.2E-45 366.8 43.5 286 552-842 24-318 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 4.8E-40 1.6E-44 364.8 46.2 289 550-842 54-354 (354)
5 3iz6_a 40S ribosomal protein R 100.0 4.2E-41 1.4E-45 376.6 34.2 291 549-842 55-372 (380)
6 2ynn_A Coatomer subunit beta'; 100.0 2.5E-39 8.5E-44 350.7 42.5 284 551-839 4-297 (304)
7 1nr0_A Actin interacting prote 100.0 3.3E-39 1.1E-43 384.3 46.5 333 503-842 63-564 (611)
8 3frx_A Guanine nucleotide-bind 100.0 6.4E-39 2.2E-43 350.1 44.6 288 548-842 5-314 (319)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.9E-39 2E-43 354.4 43.1 292 550-842 5-332 (345)
10 1nr0_A Actin interacting prote 100.0 5.7E-39 2E-43 382.3 45.3 306 513-842 162-608 (611)
11 1erj_A Transcriptional repress 100.0 8E-39 2.7E-43 359.7 43.3 282 558-842 62-386 (393)
12 4ery_A WD repeat-containing pr 100.0 2E-38 6.7E-43 343.3 44.1 288 550-842 13-309 (312)
13 2xzm_R RACK1; ribosome, transl 100.0 3.5E-38 1.2E-42 347.4 43.2 287 549-842 10-337 (343)
14 2ymu_A WD-40 repeat protein; u 100.0 1.5E-37 5E-42 364.6 48.4 307 506-842 269-577 (577)
15 4gqb_B Methylosome protein 50; 100.0 2.3E-38 7.8E-43 350.6 36.9 279 558-842 28-328 (344)
16 2hes_X YDR267CP; beta-propelle 100.0 9.2E-38 3.1E-42 342.6 41.3 289 550-842 4-325 (330)
17 4g56_B MGC81050 protein; prote 100.0 2.4E-38 8.3E-43 351.6 34.8 281 557-842 39-340 (357)
18 3zwl_B Eukaryotic translation 100.0 5.2E-37 1.8E-41 336.1 44.4 284 552-842 24-343 (369)
19 3ow8_A WD repeat-containing pr 100.0 7.5E-37 2.6E-41 334.6 43.2 272 510-803 47-320 (321)
20 2ymu_A WD-40 repeat protein; u 100.0 2.7E-36 9.3E-41 353.8 50.1 306 507-842 229-536 (577)
21 1vyh_C Platelet-activating fac 100.0 2.7E-37 9.4E-42 349.5 39.5 268 512-803 121-410 (410)
22 4aow_A Guanine nucleotide-bind 100.0 2.9E-36 9.9E-41 327.7 45.6 287 549-842 27-334 (340)
23 1gxr_A ESG1, transducin-like e 100.0 1.4E-36 4.8E-41 328.9 42.4 279 557-842 48-334 (337)
24 1r5m_A SIR4-interacting protei 100.0 7.3E-37 2.5E-41 341.7 39.7 319 511-842 57-422 (425)
25 1sq9_A Antiviral protein SKI8; 100.0 9.1E-37 3.1E-41 339.9 38.6 286 551-842 7-392 (397)
26 2pm9_A Protein WEB1, protein t 100.0 3.7E-38 1.3E-42 353.0 27.3 311 512-842 26-411 (416)
27 2ynn_A Coatomer subunit beta'; 100.0 8.3E-36 2.8E-40 323.0 42.7 274 509-804 23-302 (304)
28 4gqb_B Methylosome protein 50; 100.0 1.6E-36 5.6E-41 335.7 36.2 244 558-807 80-334 (344)
29 1k8k_C P40, ARP2/3 complex 41 100.0 2.7E-36 9.2E-41 332.2 36.3 282 556-842 4-358 (372)
30 3vl1_A 26S proteasome regulato 100.0 4.8E-36 1.6E-40 337.0 37.2 313 505-842 62-416 (420)
31 3dm0_A Maltose-binding peripla 100.0 1.3E-35 4.3E-40 358.4 43.4 285 551-842 373-690 (694)
32 1got_B GT-beta; complex (GTP-b 100.0 5.9E-35 2E-39 321.4 43.3 265 512-801 68-340 (340)
33 3odt_A Protein DOA1; ubiquitin 100.0 7E-35 2.4E-39 312.5 42.0 280 549-842 7-293 (313)
34 3frx_A Guanine nucleotide-bind 100.0 8.7E-35 3E-39 317.4 43.3 275 511-805 30-318 (319)
35 3ei3_B DNA damage-binding prot 100.0 2.2E-35 7.6E-40 328.4 37.1 285 550-842 63-379 (383)
36 3k26_A Polycomb protein EED; W 100.0 4.7E-36 1.6E-40 328.6 31.0 286 554-842 12-363 (366)
37 3i2n_A WD repeat-containing pr 100.0 1.9E-35 6.6E-40 323.0 35.4 287 554-842 12-350 (357)
38 1r5m_A SIR4-interacting protei 100.0 4.3E-35 1.5E-39 327.3 37.5 278 557-842 42-358 (425)
39 4g56_B MGC81050 protein; prote 100.0 3.5E-35 1.2E-39 326.2 32.7 284 486-805 44-344 (357)
40 2xzm_R RACK1; ribosome, transl 100.0 3E-34 1E-38 316.0 39.8 279 510-805 38-341 (343)
41 2pbi_B Guanine nucleotide-bind 100.0 5.8E-34 2E-38 315.8 42.1 267 512-801 77-354 (354)
42 3dwl_C Actin-related protein 2 100.0 2.3E-36 8E-41 334.9 22.2 285 555-842 6-376 (377)
43 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.1E-33 3.7E-38 312.2 42.6 281 511-808 28-339 (345)
44 3gre_A Serine/threonine-protei 100.0 4.4E-35 1.5E-39 331.9 32.3 285 551-842 53-437 (437)
45 4ery_A WD repeat-containing pr 100.0 2.8E-33 9.5E-38 302.8 44.5 270 510-803 34-311 (312)
46 2j04_B YDR362CP, TAU91; beta p 100.0 1.6E-35 5.5E-40 345.9 27.9 312 510-842 172-514 (524)
47 3v7d_B Cell division control p 100.0 4.7E-33 1.6E-37 317.8 47.4 300 511-841 132-459 (464)
48 3sfz_A APAF-1, apoptotic pepti 100.0 4.8E-34 1.6E-38 365.8 43.0 312 510-842 626-1031(1249)
49 2pm9_A Protein WEB1, protein t 100.0 1.7E-35 5.7E-40 331.4 25.8 279 561-842 13-334 (416)
50 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.9E-33 1E-37 318.6 44.3 296 511-842 129-439 (445)
51 1gxr_A ESG1, transducin-like e 100.0 4.1E-34 1.4E-38 309.4 35.3 278 559-842 8-293 (337)
52 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-33 4.6E-38 350.5 44.7 191 510-723 28-247 (902)
53 3mkq_A Coatomer beta'-subunit; 100.0 1.9E-33 6.6E-38 343.4 44.9 309 511-842 25-383 (814)
54 1erj_A Transcriptional repress 100.0 2E-33 6.9E-38 315.7 41.5 292 507-805 72-390 (393)
55 2hes_X YDR267CP; beta-propelle 100.0 1E-33 3.5E-38 310.4 37.6 273 513-804 26-328 (330)
56 1pgu_A Actin interacting prote 100.0 1.9E-33 6.4E-38 330.9 42.7 305 510-842 29-363 (615)
57 3v7d_B Cell division control p 100.0 2.4E-33 8.3E-38 320.2 42.0 280 551-842 112-418 (464)
58 4aow_A Guanine nucleotide-bind 100.0 1E-32 3.4E-37 299.7 43.7 278 511-806 51-339 (340)
59 1pgu_A Actin interacting prote 100.0 2.1E-33 7.1E-38 330.6 41.3 302 513-842 175-611 (615)
60 3iz6_a 40S ribosomal protein R 100.0 2.2E-34 7.5E-39 322.1 31.1 283 486-806 68-377 (380)
61 3mmy_A MRNA export factor; mRN 100.0 1E-33 3.4E-38 309.9 35.5 288 549-841 28-342 (368)
62 1yfq_A Cell cycle arrest prote 100.0 3.5E-34 1.2E-38 312.0 31.4 278 552-837 3-315 (342)
63 4e54_B DNA damage-binding prot 100.0 6.4E-35 2.2E-39 332.2 26.0 282 554-842 113-427 (435)
64 3f3f_A Nucleoporin SEH1; struc 100.0 7E-34 2.4E-38 307.1 32.6 285 554-842 5-334 (351)
65 2pm7_B Protein transport prote 100.0 1.8E-33 6.1E-38 303.6 35.6 251 553-803 2-284 (297)
66 3dw8_B Serine/threonine-protei 100.0 6.8E-34 2.3E-38 321.8 33.4 278 558-841 26-442 (447)
67 4aez_A CDC20, WD repeat-contai 100.0 4.4E-33 1.5E-37 313.2 39.5 279 554-842 85-377 (401)
68 4h5i_A Guanine nucleotide-exch 100.0 5.9E-34 2E-38 317.4 32.1 279 561-842 15-340 (365)
69 4a11_B DNA excision repair pro 100.0 4.7E-33 1.6E-37 309.5 36.9 289 552-842 35-362 (408)
70 4gga_A P55CDC, cell division c 100.0 1.7E-32 5.7E-37 310.6 41.7 270 563-842 108-392 (420)
71 3mkq_A Coatomer beta'-subunit; 100.0 3.7E-33 1.3E-37 340.9 38.6 286 551-842 4-299 (814)
72 3sfz_A APAF-1, apoptotic pepti 100.0 1E-32 3.5E-37 353.4 43.2 285 554-842 609-910 (1249)
73 3vl1_A 26S proteasome regulato 100.0 4.5E-34 1.5E-38 320.9 26.8 273 563-842 59-362 (420)
74 3dm0_A Maltose-binding peripla 100.0 2E-32 6.9E-37 330.4 42.8 275 511-804 395-693 (694)
75 1sq9_A Antiviral protein SKI8; 100.0 7E-33 2.4E-37 308.4 34.5 276 512-806 27-397 (397)
76 4ggc_A P55CDC, cell division c 100.0 6.4E-32 2.2E-36 290.5 40.6 270 563-842 28-312 (318)
77 3zwl_B Eukaryotic translation 100.0 1.9E-31 6.5E-36 291.9 44.7 271 511-806 44-348 (369)
78 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-32 5.1E-37 312.3 36.4 271 553-842 126-411 (435)
79 3i2n_A WD repeat-containing pr 100.0 7.5E-33 2.6E-37 302.5 32.2 277 512-807 32-356 (357)
80 1k8k_C P40, ARP2/3 complex 41 100.0 4.8E-32 1.6E-36 298.2 36.8 279 510-806 19-363 (372)
81 4aez_A CDC20, WD repeat-contai 100.0 9.2E-32 3.1E-36 302.4 39.2 273 512-808 104-384 (401)
82 2oaj_A Protein SNI1; WD40 repe 100.0 2E-32 6.8E-37 339.9 37.0 330 503-842 102-658 (902)
83 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-31 6.1E-36 303.8 41.6 272 552-842 110-388 (445)
84 3bg1_A Protein SEC13 homolog; 100.0 5.8E-33 2E-37 302.5 27.7 249 555-803 8-292 (316)
85 2pm7_B Protein transport prote 100.0 4.1E-32 1.4E-36 292.9 33.5 247 596-842 3-282 (297)
86 3k26_A Polycomb protein EED; W 100.0 4.2E-32 1.4E-36 297.2 33.4 289 484-803 18-365 (366)
87 3odt_A Protein DOA1; ubiquitin 100.0 3E-31 1E-35 284.2 37.3 266 511-808 29-300 (313)
88 4gga_A P55CDC, cell division c 100.0 6E-31 2.1E-35 297.8 41.7 272 512-808 117-399 (420)
89 3jrp_A Fusion protein of prote 100.0 1.1E-31 3.6E-36 295.4 33.5 251 553-804 4-287 (379)
90 3ei3_B DNA damage-binding prot 100.0 1.3E-31 4.3E-36 298.1 33.8 267 512-804 87-382 (383)
91 2aq5_A Coronin-1A; WD40 repeat 100.0 6E-32 2E-36 303.6 30.5 278 562-842 36-339 (402)
92 4a11_B DNA excision repair pro 100.0 2.2E-30 7.4E-35 287.9 40.9 314 511-842 56-402 (408)
93 3dwl_C Actin-related protein 2 100.0 3.1E-32 1.1E-36 301.7 24.5 279 506-802 18-377 (377)
94 3bg1_A Protein SEC13 homolog; 100.0 2.8E-32 9.6E-37 297.1 23.7 246 597-842 8-290 (316)
95 3bws_A Protein LP49; two-domai 100.0 1.4E-30 4.7E-35 294.0 38.3 285 551-842 114-429 (433)
96 4e54_B DNA damage-binding prot 100.0 2.6E-31 8.9E-36 302.4 31.1 274 511-807 132-433 (435)
97 3jrp_A Fusion protein of prote 100.0 8.2E-31 2.8E-35 288.4 32.1 250 593-842 2-284 (379)
98 4ggc_A P55CDC, cell division c 100.0 1.8E-29 6E-34 271.4 39.9 270 512-806 37-317 (318)
99 1p22_A F-BOX/WD-repeat protein 100.0 4.8E-30 1.6E-34 291.6 34.3 281 511-823 143-433 (435)
100 3gre_A Serine/threonine-protei 100.0 3.8E-31 1.3E-35 299.6 25.0 264 567-842 34-356 (437)
101 3dw8_B Serine/threonine-protei 100.0 4E-30 1.4E-34 290.9 32.8 278 511-803 40-445 (447)
102 3vu4_A KMHSV2; beta-propeller 100.0 7.2E-30 2.4E-34 283.0 33.7 274 553-842 12-333 (355)
103 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.6E-29 8.7E-34 287.1 37.8 272 561-841 5-387 (450)
104 2aq5_A Coronin-1A; WD40 repeat 100.0 2.7E-30 9.2E-35 290.1 28.7 277 512-808 48-346 (402)
105 4h5i_A Guanine nucleotide-exch 100.0 2.4E-29 8.1E-34 280.2 33.1 277 511-805 26-344 (365)
106 2xyi_A Probable histone-bindin 100.0 2.1E-29 7.2E-34 286.3 32.8 245 596-842 122-407 (430)
107 3lrv_A PRE-mRNA-splicing facto 100.0 1.4E-30 4.6E-35 286.5 22.2 265 567-841 43-329 (343)
108 1yfq_A Cell cycle arrest prote 100.0 5.3E-29 1.8E-33 270.9 34.1 262 512-801 24-321 (342)
109 1l0q_A Surface layer protein; 100.0 7.8E-28 2.7E-32 267.7 42.9 275 512-814 3-286 (391)
110 1l0q_A Surface layer protein; 100.0 3.2E-28 1.1E-32 270.8 39.2 262 573-842 3-272 (391)
111 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-30 3.8E-35 304.9 19.5 256 569-829 170-458 (524)
112 2j04_A TAU60, YPL007P, hypothe 100.0 5.9E-30 2E-34 294.6 24.3 262 558-842 13-294 (588)
113 2xyi_A Probable histone-bindin 100.0 3.6E-29 1.2E-33 284.4 30.3 252 554-805 122-411 (430)
114 3f3f_A Nucleoporin SEH1; struc 100.0 2.9E-28 9.8E-33 263.0 34.0 278 512-808 24-341 (351)
115 3jro_A Fusion protein of prote 100.0 1.8E-29 6.3E-34 307.8 27.0 251 553-804 2-285 (753)
116 3mmy_A MRNA export factor; mRN 100.0 1.1E-27 3.8E-32 261.8 37.3 287 484-808 39-353 (368)
117 2j04_A TAU60, YPL007P, hypothe 100.0 3.3E-29 1.1E-33 288.4 22.7 245 558-834 83-350 (588)
118 4gq1_A NUP37; propeller, trans 100.0 1.2E-28 4E-33 277.1 25.0 261 557-838 86-383 (393)
119 3jro_A Fusion protein of prote 100.0 2E-28 7E-33 298.5 25.8 247 596-842 3-282 (753)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.9E-26 9.8E-31 261.8 39.1 246 555-803 97-390 (450)
121 1nir_A Nitrite reductase; hemo 100.0 7.9E-26 2.7E-30 265.4 39.5 310 510-842 148-511 (543)
122 3vu4_A KMHSV2; beta-propeller 100.0 8.9E-27 3E-31 258.1 28.4 245 586-842 3-268 (355)
123 3bws_A Protein LP49; two-domai 100.0 2.1E-25 7.1E-30 251.6 38.8 277 507-804 130-432 (433)
124 3lrv_A PRE-mRNA-splicing facto 99.9 3.6E-26 1.2E-30 251.2 26.4 264 508-805 45-334 (343)
125 2w18_A PALB2, fancn, partner a 99.9 6.2E-25 2.1E-29 238.8 33.2 284 549-842 24-354 (356)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.3E-25 1.1E-29 251.2 31.8 265 554-827 111-410 (415)
127 4gq1_A NUP37; propeller, trans 99.9 1.2E-25 4E-30 252.6 21.2 237 508-759 98-389 (393)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.9E-25 2E-29 249.1 26.3 274 560-842 62-384 (415)
129 3vgz_A Uncharacterized protein 99.9 6E-23 2.1E-27 224.0 38.2 268 561-835 41-334 (353)
130 2w18_A PALB2, fancn, partner a 99.9 2.3E-24 7.9E-29 234.3 26.0 253 542-802 68-355 (356)
131 3u4y_A Uncharacterized protein 99.9 4.3E-23 1.5E-27 223.8 35.1 274 566-842 3-301 (331)
132 1ri6_A Putative isomerase YBHE 99.9 4.8E-23 1.7E-27 223.2 32.2 266 574-842 7-305 (343)
133 1nir_A Nitrite reductase; hemo 99.9 5.1E-23 1.7E-27 241.5 33.0 268 567-842 144-455 (543)
134 2ecf_A Dipeptidyl peptidase IV 99.9 2.5E-23 8.7E-28 251.9 29.7 276 560-842 36-410 (741)
135 2ecf_A Dipeptidyl peptidase IV 99.9 9E-23 3.1E-27 247.0 31.6 272 562-841 110-455 (741)
136 2ojh_A Uncharacterized protein 99.9 7.2E-23 2.5E-27 215.8 26.8 253 577-836 17-293 (297)
137 1ri6_A Putative isomerase YBHE 99.9 7.1E-22 2.4E-26 214.0 34.8 295 513-827 7-335 (343)
138 3u4y_A Uncharacterized protein 99.9 1.1E-21 3.8E-26 212.7 34.8 292 511-826 10-326 (331)
139 1pby_B Quinohemoprotein amine 99.9 2.9E-22 9.8E-27 216.6 29.8 262 573-842 2-307 (337)
140 2ojh_A Uncharacterized protein 99.9 1.2E-22 4.2E-27 214.1 25.9 238 555-795 36-293 (297)
141 3o4h_A Acylamino-acid-releasin 99.9 4E-22 1.4E-26 235.1 28.7 267 560-842 21-312 (582)
142 1xfd_A DIP, dipeptidyl aminope 99.9 8.3E-23 2.9E-27 246.4 21.8 275 562-842 18-390 (723)
143 2z3z_A Dipeptidyl aminopeptida 99.9 2E-21 6.8E-26 234.1 31.3 275 559-842 80-432 (706)
144 1k32_A Tricorn protease; prote 99.9 1.1E-21 3.6E-26 247.7 28.4 278 553-842 196-499 (1045)
145 1xfd_A DIP, dipeptidyl aminope 99.9 1.4E-21 4.9E-26 235.7 27.6 298 512-833 29-428 (723)
146 3hfq_A Uncharacterized protein 99.9 3.1E-20 1.1E-24 203.3 34.1 260 581-841 15-313 (347)
147 1pby_B Quinohemoprotein amine 99.9 9E-21 3.1E-25 204.8 29.0 268 512-808 2-314 (337)
148 1k32_A Tricorn protease; prote 99.9 7.8E-21 2.7E-25 239.8 32.3 278 553-842 92-458 (1045)
149 1jmx_B Amine dehydrogenase; ox 99.9 1.2E-20 4.1E-25 205.1 28.5 270 565-842 4-322 (349)
150 3pe7_A Oligogalacturonate lyas 99.9 8.9E-21 3.1E-25 210.3 27.8 286 553-841 23-378 (388)
151 3hfq_A Uncharacterized protein 99.9 6.8E-20 2.3E-24 200.6 33.0 250 558-809 37-324 (347)
152 3scy_A Hypothetical bacterial 99.9 2.4E-19 8.1E-24 197.6 37.5 262 559-823 48-360 (361)
153 2z3z_A Dipeptidyl aminopeptida 99.9 5.2E-20 1.8E-24 221.7 30.0 244 555-806 115-437 (706)
154 3vgz_A Uncharacterized protein 99.9 2.8E-19 9.4E-24 194.9 32.6 236 601-842 39-300 (353)
155 3scy_A Hypothetical bacterial 99.9 5.7E-19 1.9E-23 194.6 34.1 267 572-841 13-333 (361)
156 2oit_A Nucleoporin 214KDA; NH2 99.8 1.3E-19 4.5E-24 206.5 27.6 240 560-802 36-331 (434)
157 1z68_A Fibroblast activation p 99.8 2E-20 6.7E-25 226.0 17.6 268 565-842 20-388 (719)
158 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.9E-18 6.3E-23 191.7 31.2 267 574-842 4-338 (365)
159 3c5m_A Oligogalacturonate lyas 99.8 2E-19 6.9E-24 199.2 21.6 272 563-841 38-378 (396)
160 1jmx_B Amine dehydrogenase; ox 99.8 2.6E-18 8.8E-23 186.6 29.7 274 507-809 7-330 (349)
161 1z68_A Fibroblast activation p 99.8 1.9E-19 6.6E-24 217.3 22.4 272 562-842 61-440 (719)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.3E-17 7.9E-22 182.8 34.0 246 559-806 38-343 (365)
163 3o4h_A Acylamino-acid-releasin 99.8 7.8E-19 2.7E-23 206.9 22.3 230 601-842 20-273 (582)
164 4a5s_A Dipeptidyl peptidase 4 99.8 6E-18 2.1E-22 205.6 26.5 265 561-833 17-381 (740)
165 2oit_A Nucleoporin 214KDA; NH2 99.8 8.1E-18 2.8E-22 191.7 24.3 212 582-805 23-279 (434)
166 3azo_A Aminopeptidase; POP fam 99.8 1.9E-17 6.5E-22 197.7 26.3 280 555-841 18-363 (662)
167 4a5s_A Dipeptidyl peptidase 4 99.8 7.1E-17 2.4E-21 196.1 30.2 295 512-834 29-435 (740)
168 2oiz_A Aromatic amine dehydrog 99.8 1.6E-16 5.5E-21 176.4 29.9 263 554-827 45-360 (361)
169 2oiz_A Aromatic amine dehydrog 99.8 1.8E-16 6.2E-21 176.0 28.8 263 571-842 14-331 (361)
170 2gop_A Trilobed protease; beta 99.7 4.9E-16 1.7E-20 169.4 30.2 252 562-841 16-327 (347)
171 3fvz_A Peptidyl-glycine alpha- 99.7 7.2E-16 2.5E-20 168.4 30.2 240 560-804 23-322 (329)
172 2dg1_A DRP35, lactonase; beta 99.7 6.2E-16 2.1E-20 168.0 29.0 268 561-835 6-300 (333)
173 1qks_A Cytochrome CD1 nitrite 99.7 1.7E-14 5.7E-19 169.5 40.6 308 512-842 168-535 (567)
174 1q7f_A NHL, brain tumor CG1071 99.7 4.6E-15 1.6E-19 157.6 32.1 237 558-805 27-281 (286)
175 3pe7_A Oligogalacturonate lyas 99.7 5.9E-16 2E-20 171.4 26.1 245 554-804 74-384 (388)
176 1q7f_A NHL, brain tumor CG1071 99.7 7.5E-15 2.6E-19 156.0 32.5 234 600-842 27-277 (286)
177 3azo_A Aminopeptidase; POP fam 99.7 6.5E-16 2.2E-20 184.4 25.7 240 565-810 81-375 (662)
178 2z2n_A Virginiamycin B lyase; 99.7 1E-13 3.6E-18 146.8 40.0 274 556-839 10-290 (299)
179 3fvz_A Peptidyl-glycine alpha- 99.7 5.5E-15 1.9E-19 161.4 28.6 234 602-842 23-319 (329)
180 2dg1_A DRP35, lactonase; beta 99.7 5.5E-14 1.9E-18 152.6 35.6 236 553-795 37-301 (333)
181 2xdw_A Prolyl endopeptidase; a 99.7 5E-15 1.7E-19 179.0 28.7 245 558-806 122-416 (710)
182 3e5z_A Putative gluconolactona 99.7 1.9E-14 6.5E-19 153.9 29.2 243 554-808 21-290 (296)
183 3dsm_A Uncharacterized protein 99.7 2.9E-14 1E-18 155.8 30.5 251 580-842 15-299 (328)
184 2gop_A Trilobed protease; beta 99.7 1.6E-14 5.3E-19 157.5 27.7 234 561-816 59-342 (347)
185 1qks_A Cytochrome CD1 nitrite 99.7 2.7E-13 9.1E-18 159.2 38.3 265 570-842 165-474 (567)
186 3e5z_A Putative gluconolactona 99.6 6.3E-14 2.2E-18 149.8 29.9 239 593-840 18-282 (296)
187 3c5m_A Oligogalacturonate lyas 99.6 7.7E-15 2.6E-19 162.2 22.4 237 563-808 83-388 (396)
188 2qc5_A Streptogramin B lactona 99.6 1.1E-12 3.8E-17 138.9 38.1 275 556-841 15-296 (300)
189 2bkl_A Prolyl endopeptidase; m 99.6 7.1E-15 2.4E-19 177.2 22.4 246 558-811 118-404 (695)
190 3dsm_A Uncharacterized protein 99.6 1.1E-13 3.6E-18 151.3 28.9 253 562-822 45-319 (328)
191 3sjl_D Methylamine dehydrogena 99.6 1.2E-13 4E-18 153.6 27.0 271 566-842 38-360 (386)
192 1rwi_B Serine/threonine-protei 99.6 1.4E-13 4.7E-18 144.4 25.8 238 562-806 25-266 (270)
193 2mad_H Methylamine dehydrogena 99.6 2.3E-12 7.8E-17 143.7 36.8 267 567-842 27-347 (373)
194 2xdw_A Prolyl endopeptidase; a 99.6 2.6E-13 8.8E-18 163.9 31.0 268 570-842 81-411 (710)
195 1rwi_B Serine/threonine-protei 99.6 1.7E-13 6E-18 143.6 24.8 232 604-842 25-261 (270)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.4E-12 8.3E-17 137.8 32.1 239 557-804 14-299 (314)
197 3no2_A Uncharacterized protein 99.6 1.1E-12 3.7E-17 140.1 28.8 241 571-821 4-272 (276)
198 2z2n_A Virginiamycin B lyase; 99.5 2.8E-11 9.7E-16 128.0 37.8 239 558-806 54-297 (299)
199 2bkl_A Prolyl endopeptidase; m 99.5 2.3E-13 7.9E-18 164.0 24.4 268 569-842 76-394 (695)
200 1yr2_A Prolyl oligopeptidase; 99.5 3.5E-13 1.2E-17 163.7 25.7 245 559-810 161-447 (741)
201 2mad_H Methylamine dehydrogena 99.5 4.4E-11 1.5E-15 133.3 39.7 244 554-810 61-356 (373)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 5.3E-12 1.8E-16 135.1 28.9 236 601-842 16-296 (314)
203 3c75_H MADH, methylamine dehyd 99.5 2.3E-12 7.8E-17 145.5 25.2 266 570-842 82-399 (426)
204 1yr2_A Prolyl oligopeptidase; 99.5 2.7E-12 9.3E-17 155.8 26.6 268 569-842 115-438 (741)
205 3no2_A Uncharacterized protein 99.5 2.2E-11 7.6E-16 129.8 29.6 215 510-750 4-233 (276)
206 3sjl_D Methylamine dehydrogena 99.5 6.1E-12 2.1E-16 139.7 25.5 252 565-825 82-384 (386)
207 2qc5_A Streptogramin B lactona 99.5 2.6E-10 8.8E-15 120.6 36.1 235 558-803 59-299 (300)
208 3g4e_A Regucalcin; six bladed 99.4 1.5E-10 5.3E-15 124.1 33.8 230 556-794 8-262 (297)
209 3g4e_A Regucalcin; six bladed 99.4 1.6E-10 5.4E-15 124.0 33.7 228 598-833 8-260 (297)
210 3iuj_A Prolyl endopeptidase; h 99.4 6.4E-12 2.2E-16 151.4 25.3 245 558-811 126-412 (693)
211 3hrp_A Uncharacterized protein 99.4 4.6E-11 1.6E-15 134.8 30.7 230 603-841 131-406 (409)
212 3hrp_A Uncharacterized protein 99.4 1.1E-10 3.7E-15 131.8 31.4 232 561-802 131-408 (409)
213 2ghs_A AGR_C_1268P; regucalcin 99.4 4.4E-10 1.5E-14 122.4 34.6 220 563-795 51-293 (326)
214 2qe8_A Uncharacterized protein 99.4 6.4E-12 2.2E-16 138.0 19.8 260 561-837 17-313 (343)
215 3c75_H MADH, methylamine dehyd 99.4 5.6E-11 1.9E-15 134.1 26.0 237 565-810 122-408 (426)
216 3dr2_A Exported gluconolactona 99.4 1E-10 3.4E-15 125.9 26.9 234 554-801 38-303 (305)
217 3dr2_A Exported gluconolactona 99.4 8.4E-11 2.9E-15 126.5 25.9 235 595-840 37-302 (305)
218 2ghs_A AGR_C_1268P; regucalcin 99.4 8.7E-10 3E-14 120.0 33.8 221 604-834 50-291 (326)
219 1xip_A Nucleoporin NUP159; bet 99.3 1.6E-11 5.5E-16 136.8 18.3 172 562-748 39-232 (388)
220 1mda_H Methylamine dehydrogena 99.3 2.3E-11 7.7E-16 135.0 17.3 254 553-824 59-366 (368)
221 3q7m_A Lipoprotein YFGL, BAMB; 99.3 4.1E-09 1.4E-13 116.4 35.5 255 571-842 102-375 (376)
222 1kb0_A Quinohemoprotein alcoho 99.2 1.1E-09 3.7E-14 131.5 28.3 263 572-842 77-504 (677)
223 1yiq_A Quinohemoprotein alcoho 99.2 5.9E-10 2E-14 134.1 25.8 266 572-842 70-502 (689)
224 2hz6_A Endoplasmic reticulum t 99.2 8E-14 2.7E-18 155.2 -7.5 223 571-806 8-238 (369)
225 3hxj_A Pyrrolo-quinoline quino 99.2 2.7E-10 9.3E-15 122.6 20.5 258 562-841 61-320 (330)
226 1mda_H Methylamine dehydrogena 99.2 1.6E-10 5.6E-15 128.1 18.3 246 583-842 47-343 (368)
227 3q7m_A Lipoprotein YFGL, BAMB; 99.2 5E-09 1.7E-13 115.8 29.6 254 572-842 53-334 (376)
228 3iuj_A Prolyl endopeptidase; h 99.2 5.8E-10 2E-14 134.3 23.9 236 600-842 126-402 (693)
229 1kb0_A Quinohemoprotein alcoho 99.2 2.3E-09 7.9E-14 128.7 28.0 254 571-831 127-536 (677)
230 1yiq_A Quinohemoprotein alcoho 99.2 4.4E-09 1.5E-13 126.5 29.8 256 572-833 121-537 (689)
231 1npe_A Nidogen, entactin; glyc 99.2 4.2E-08 1.4E-12 103.1 33.7 247 573-827 2-263 (267)
232 2ece_A 462AA long hypothetical 99.2 1.9E-08 6.4E-13 112.7 30.9 220 570-792 93-399 (462)
233 1xip_A Nucleoporin NUP159; bet 99.2 5E-10 1.7E-14 124.8 17.9 169 647-832 39-231 (388)
234 3hxj_A Pyrrolo-quinoline quino 99.1 7.2E-10 2.5E-14 119.3 14.7 257 565-842 24-281 (330)
235 2qe8_A Uncharacterized protein 99.1 2.5E-09 8.7E-14 117.1 18.7 220 603-842 17-275 (343)
236 1fwx_A Nitrous oxide reductase 99.1 4.3E-09 1.5E-13 121.7 21.0 257 575-834 18-407 (595)
237 2ece_A 462AA long hypothetical 99.0 8E-08 2.7E-12 107.6 29.0 222 609-833 88-399 (462)
238 1kv9_A Type II quinohemoprotei 99.0 3E-08 1E-12 118.8 27.4 264 572-842 66-485 (668)
239 1fwx_A Nitrous oxide reductase 99.0 1E-08 3.5E-13 118.6 20.9 234 571-808 100-435 (595)
240 1npe_A Nidogen, entactin; glyc 99.0 4.4E-07 1.5E-11 95.2 31.4 222 615-842 2-235 (267)
241 2hz6_A Endoplasmic reticulum t 99.0 2.7E-10 9.3E-15 126.6 5.5 201 613-827 8-216 (369)
242 2ad6_A Methanol dehydrogenase 99.0 1.4E-07 4.8E-12 110.8 27.9 263 572-842 62-491 (571)
243 2iwa_A Glutamine cyclotransfer 98.9 2.2E-07 7.4E-12 98.0 26.0 204 593-805 10-238 (266)
244 4a2l_A BT_4663, two-component 98.9 2.7E-06 9.4E-11 103.7 39.2 266 560-841 262-567 (795)
245 4a2l_A BT_4663, two-component 98.9 2.2E-06 7.4E-11 104.6 37.3 267 559-841 213-522 (795)
246 2fp8_A Strictosidine synthase; 98.9 1.1E-06 3.7E-11 94.9 30.0 234 561-805 19-314 (322)
247 1w6s_A Methanol dehydrogenase 98.9 3.1E-07 1.1E-11 108.2 27.0 265 572-842 62-500 (599)
248 2p4o_A Hypothetical protein; p 98.8 2.1E-06 7.1E-11 92.2 30.4 233 592-835 22-278 (306)
249 2fp8_A Strictosidine synthase; 98.8 1.3E-06 4.3E-11 94.4 28.2 232 603-842 19-310 (322)
250 3v9f_A Two-component system se 98.8 5.3E-06 1.8E-10 101.0 36.5 274 560-842 257-565 (781)
251 2iwa_A Glutamine cyclotransfer 98.8 7.2E-07 2.5E-11 93.9 24.1 186 647-840 22-232 (266)
252 1kv9_A Type II quinohemoprotei 98.8 6.5E-07 2.2E-11 107.2 25.7 255 572-833 117-520 (668)
253 3nol_A Glutamine cyclotransfer 98.8 7.9E-07 2.7E-11 92.8 22.5 192 593-794 32-245 (262)
254 2p4o_A Hypothetical protein; p 98.7 1.2E-05 4.1E-10 86.2 31.6 237 550-795 22-279 (306)
255 1k3i_A Galactose oxidase precu 98.7 2E-07 7E-12 111.3 19.0 266 565-834 190-530 (656)
256 1flg_A Protein (quinoprotein e 98.7 4.9E-06 1.7E-10 97.9 30.3 265 572-842 68-513 (582)
257 2ad6_A Methanol dehydrogenase 98.7 1.8E-06 6.1E-11 101.4 26.3 254 572-831 115-523 (571)
258 1ijq_A LDL receptor, low-densi 98.7 4.5E-05 1.5E-09 82.3 35.6 228 574-806 3-240 (316)
259 3v9f_A Two-component system se 98.7 1.8E-05 6.1E-10 96.3 35.4 269 560-841 210-520 (781)
260 3nol_A Glutamine cyclotransfer 98.7 2.6E-06 8.8E-11 89.0 23.3 179 646-834 43-244 (262)
261 3v64_C Agrin; beta propeller, 98.7 2.4E-05 8.2E-10 85.8 32.3 238 560-806 33-277 (349)
262 3nok_A Glutaminyl cyclase; bet 98.7 2.6E-06 9E-11 88.9 23.0 191 593-794 44-255 (268)
263 3mbr_X Glutamine cyclotransfer 98.6 7.5E-06 2.6E-10 84.7 24.6 191 593-794 10-224 (243)
264 1w6s_A Methanol dehydrogenase 98.6 1.1E-05 3.9E-10 94.9 29.2 251 575-832 124-534 (599)
265 3v65_B Low-density lipoprotein 98.6 2.2E-05 7.6E-10 87.3 30.2 236 563-807 79-321 (386)
266 3nok_A Glutaminyl cyclase; bet 98.6 3.7E-06 1.3E-10 87.9 21.6 177 646-833 55-253 (268)
267 3mbr_X Glutamine cyclotransfer 98.6 1.4E-05 4.8E-10 82.7 25.5 181 643-833 16-222 (243)
268 3tc9_A Hypothetical hydrolase; 98.6 8.8E-06 3E-10 92.1 26.1 233 604-841 138-426 (430)
269 2xbg_A YCF48-like protein; pho 98.6 7.1E-05 2.4E-09 81.2 32.3 276 547-842 24-319 (327)
270 1flg_A Protein (quinoprotein e 98.6 1.7E-05 5.7E-10 93.3 28.6 254 572-830 117-544 (582)
271 1ijq_A LDL receptor, low-densi 98.5 0.00016 5.5E-09 78.0 33.3 219 616-841 3-234 (316)
272 2xe4_A Oligopeptidase B; hydro 98.5 9E-06 3.1E-10 98.6 25.3 238 562-808 175-462 (751)
273 3v64_C Agrin; beta propeller, 98.5 0.00011 3.6E-09 80.7 31.5 227 606-840 37-270 (349)
274 3sov_A LRP-6, low-density lipo 98.5 5.3E-05 1.8E-09 82.0 28.6 221 581-807 12-241 (318)
275 3p5b_L Low density lipoprotein 98.5 0.00026 8.9E-09 79.1 34.8 229 574-807 85-323 (400)
276 3qqz_A Putative uncharacterize 98.5 4.1E-05 1.4E-09 80.0 25.8 199 640-841 21-249 (255)
277 3v65_B Low-density lipoprotein 98.5 8.2E-05 2.8E-09 82.7 29.8 227 607-841 81-314 (386)
278 3qqz_A Putative uncharacterize 98.4 0.00041 1.4E-08 72.5 31.8 202 554-757 20-251 (255)
279 3tc9_A Hypothetical hydrolase; 98.4 7.5E-05 2.6E-09 84.3 28.4 235 562-803 138-429 (430)
280 4hw6_A Hypothetical protein, I 98.4 6.6E-05 2.3E-09 84.9 27.2 234 603-841 139-429 (433)
281 3amr_A 3-phytase; beta-propell 98.4 6.8E-05 2.3E-09 81.4 25.9 185 571-758 39-262 (355)
282 2xe4_A Oligopeptidase B; hydro 98.4 2.9E-05 9.9E-10 94.2 25.4 192 604-802 175-398 (751)
283 3sov_A LRP-6, low-density lipo 98.4 0.00027 9.3E-09 76.4 30.2 221 616-841 6-234 (318)
284 3p5b_L Low density lipoprotein 98.4 0.0004 1.4E-08 77.6 32.4 219 616-841 85-316 (400)
285 3m0c_C LDL receptor, low-densi 98.3 0.00044 1.5E-08 83.9 33.6 238 564-807 388-635 (791)
286 4hw6_A Hypothetical protein, I 98.3 0.00026 8.9E-09 80.0 27.9 234 562-803 140-432 (433)
287 3kya_A Putative phosphatase; s 98.2 0.00035 1.2E-08 79.7 27.1 232 604-841 140-471 (496)
288 1k3i_A Galactose oxidase precu 98.1 6.5E-05 2.2E-09 89.6 20.4 228 607-835 190-476 (656)
289 3m0c_C LDL receptor, low-densi 98.1 0.0019 6.4E-08 78.4 32.8 216 616-839 397-626 (791)
290 3kya_A Putative phosphatase; s 98.1 0.00067 2.3E-08 77.5 27.2 240 563-808 141-479 (496)
291 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0025 8.5E-08 75.4 32.1 219 616-840 8-232 (628)
292 3s94_A LRP-6, low-density lipo 98.0 0.0014 4.8E-08 77.5 28.4 223 580-807 16-246 (619)
293 2ism_A Putative oxidoreductase 98.0 0.00091 3.1E-08 73.2 25.1 225 561-791 31-332 (352)
294 3s94_A LRP-6, low-density lipo 98.0 0.0057 2E-07 72.2 32.6 276 561-840 84-418 (619)
295 4a0p_A LRP6, LRP-6, low-densit 98.0 0.0076 2.6E-07 71.2 33.6 224 574-806 8-239 (628)
296 2xbg_A YCF48-like protein; pho 98.0 0.0016 5.5E-08 70.3 25.3 231 560-802 79-320 (327)
297 1n7d_A LDL receptor, low-densi 97.9 1.6E-05 5.5E-10 95.5 9.9 226 581-810 385-620 (699)
298 3a9g_A Putative uncharacterize 97.9 0.0051 1.8E-07 67.3 29.2 230 560-791 28-329 (354)
299 2xzh_A Clathrin heavy chain 1; 97.9 0.019 6.4E-07 61.4 31.1 233 566-808 72-336 (365)
300 2p9w_A MAL S 1 allergenic prot 97.9 0.0027 9.2E-08 68.3 25.2 198 560-759 12-265 (334)
301 3ott_A Two-component system se 97.9 0.019 6.6E-07 69.1 36.0 264 560-839 62-347 (758)
302 3sre_A PON1, serum paraoxonase 97.9 0.002 7E-08 70.4 24.4 195 604-802 51-296 (355)
303 2ism_A Putative oxidoreductase 97.9 0.0035 1.2E-07 68.6 26.5 225 602-833 30-333 (352)
304 2xzh_A Clathrin heavy chain 1; 97.9 0.027 9.2E-07 60.2 31.7 247 581-838 48-325 (365)
305 3ei3_A DNA damage-binding prot 97.8 0.065 2.2E-06 67.6 40.7 272 561-841 652-995 (1158)
306 3amr_A 3-phytase; beta-propell 97.8 0.0035 1.2E-07 68.1 24.8 179 660-842 42-260 (355)
307 3a9g_A Putative uncharacterize 97.8 0.0061 2.1E-07 66.7 27.0 226 602-833 28-330 (354)
308 2g8s_A Glucose/sorbosone dehyd 97.8 0.0042 1.4E-07 68.0 25.0 233 603-838 18-347 (353)
309 1bpo_A Protein (clathrin); cla 97.8 0.04 1.4E-06 61.1 31.8 234 565-808 70-335 (494)
310 3ott_A Two-component system se 97.8 0.066 2.2E-06 64.5 37.6 266 561-841 146-444 (758)
311 2p9w_A MAL S 1 allergenic prot 97.7 0.0071 2.4E-07 65.1 25.3 208 598-807 8-268 (334)
312 1bpo_A Protein (clathrin); cla 97.7 0.096 3.3E-06 58.0 36.8 246 581-838 47-324 (494)
313 2vpj_A Kelch-like protein 12; 97.7 0.0031 1E-07 66.7 21.5 228 571-809 14-283 (301)
314 3das_A Putative oxidoreductase 97.7 0.029 1E-06 61.0 29.5 233 597-833 26-326 (347)
315 2g8s_A Glucose/sorbosone dehyd 97.6 0.0079 2.7E-07 65.7 24.6 226 562-790 19-339 (353)
316 3ei3_A DNA damage-binding prot 97.6 0.064 2.2E-06 67.7 35.3 272 560-842 553-910 (1158)
317 1n7d_A LDL receptor, low-densi 97.6 0.00014 4.9E-09 87.3 10.0 213 623-841 385-610 (699)
318 3ii7_A Kelch-like protein 7; p 97.5 0.015 5.2E-07 61.5 23.8 226 573-808 13-276 (306)
319 3sre_A PON1, serum paraoxonase 97.5 0.17 5.8E-06 55.1 32.3 201 554-758 43-297 (355)
320 3das_A Putative oxidoreductase 97.4 0.067 2.3E-06 58.2 28.2 236 554-791 25-325 (347)
321 2xn4_A Kelch-like protein 2; s 97.4 0.012 4E-07 62.2 21.0 228 572-810 16-282 (302)
322 3sbq_A Nitrous-oxide reductase 97.4 0.02 7E-07 65.1 23.1 257 575-833 73-453 (638)
323 4b8c_D Glucose-repressible alc 97.3 2.8E-05 9.5E-10 93.9 -1.1 13 812-824 707-719 (727)
324 2vpj_A Kelch-like protein 12; 97.2 0.012 4.2E-07 61.9 19.2 215 613-836 14-264 (301)
325 3s25_A Hypothetical 7-bladed b 97.2 0.084 2.9E-06 56.3 25.4 214 570-810 23-261 (302)
326 1cru_A Protein (soluble quinop 97.2 0.11 3.7E-06 58.8 27.7 156 602-758 26-258 (454)
327 1zgk_A Kelch-like ECH-associat 97.2 0.012 4.1E-07 62.5 18.7 230 570-810 23-293 (308)
328 4asc_A Kelch repeat and BTB do 97.2 0.036 1.2E-06 58.9 22.3 224 574-810 7-283 (315)
329 3ii7_A Kelch-like protein 7; p 97.2 0.026 8.8E-07 59.7 20.8 210 615-835 13-257 (306)
330 2xn4_A Kelch-like protein 2; s 97.1 0.022 7.6E-07 60.0 19.8 212 615-836 17-262 (302)
331 4b8c_D Glucose-repressible alc 97.1 0.00016 5.4E-09 87.3 2.3 9 581-589 487-495 (727)
332 3s25_A Hypothetical 7-bladed b 97.0 0.094 3.2E-06 55.9 23.7 177 565-760 57-256 (302)
333 2woz_A Kelch repeat and BTB do 96.9 0.13 4.4E-06 54.6 23.4 226 574-810 18-293 (318)
334 2uvk_A YJHT; unknown function, 96.8 0.031 1.1E-06 60.4 17.7 230 571-809 19-347 (357)
335 4asc_A Kelch repeat and BTB do 96.8 0.12 4.1E-06 54.8 21.7 210 616-835 7-253 (315)
336 1cru_A Protein (soluble quinop 96.8 0.42 1.4E-05 53.9 27.2 105 561-665 27-163 (454)
337 2be1_A Serine/threonine-protei 96.7 0.0096 3.3E-07 64.6 12.7 185 573-760 11-232 (339)
338 3pbp_A Nucleoporin NUP82; beta 96.7 0.06 2.1E-06 59.6 18.9 132 708-839 40-206 (452)
339 2be1_A Serine/threonine-protei 96.7 0.02 6.8E-07 62.1 15.0 192 615-809 11-236 (339)
340 2woz_A Kelch repeat and BTB do 96.6 0.15 5.1E-06 54.1 21.3 203 625-835 25-263 (318)
341 3iot_A Maltose-binding protein 96.5 0.0024 8.3E-08 72.1 6.4 12 53-64 337-348 (449)
342 1xi4_A Clathrin heavy chain; a 96.4 0.059 2E-06 67.8 18.3 235 566-808 71-335 (1630)
343 1tl2_A L10, protein (tachylect 96.4 0.3 1E-05 49.3 20.2 173 658-839 4-204 (236)
344 1xi4_A Clathrin heavy chain; a 96.4 0.13 4.5E-06 64.7 20.9 218 581-808 47-293 (1630)
345 3b7f_A Glycosyl hydrolase, BNR 96.3 1.6 5.5E-05 47.6 27.9 256 560-823 54-391 (394)
346 1zgk_A Kelch-like ECH-associat 96.3 0.12 4E-06 54.7 17.8 214 613-836 24-273 (308)
347 2uvk_A YJHT; unknown function, 96.2 0.22 7.5E-06 53.6 19.9 185 571-761 65-344 (357)
348 3pbp_A Nucleoporin NUP82; beta 96.2 0.29 9.8E-06 54.2 20.4 143 654-800 29-208 (452)
349 1tl2_A L10, protein (tachylect 96.1 0.16 5.4E-06 51.4 16.3 176 613-798 3-204 (236)
350 2wg3_C Hedgehog-interacting pr 95.8 3.5 0.00012 46.4 29.6 231 562-792 15-354 (463)
351 2zwa_A Leucine carboxyl methyl 95.7 0.22 7.7E-06 59.3 18.4 221 613-834 397-674 (695)
352 2wg3_C Hedgehog-interacting pr 95.6 4.1 0.00014 45.9 29.0 229 603-833 14-354 (463)
353 3uc1_A DNA gyrase subunit A; D 95.2 3 0.0001 44.6 23.3 263 573-836 4-321 (327)
354 4hvt_A Ritya.17583.B, post-pro 95.1 1.4 4.8E-05 52.5 22.5 235 568-808 137-433 (711)
355 3b7f_A Glycosyl hydrolase, BNR 95.0 5.1 0.00017 43.5 29.0 259 573-840 23-367 (394)
356 3iot_A Maltose-binding protein 94.7 0.01 3.4E-07 67.0 2.0 13 55-67 335-347 (449)
357 2zwa_A Leucine carboxyl methyl 94.6 0.77 2.6E-05 54.7 18.5 151 571-722 451-639 (695)
358 3qhy_B Beta-lactamase inhibito 93.7 1.9 6.5E-05 45.1 17.2 217 603-841 24-242 (282)
359 1wp5_A Topoisomerase IV; broke 93.6 8.9 0.0003 40.8 22.5 233 570-804 3-277 (323)
360 3qhy_B Beta-lactamase inhibito 93.6 0.96 3.3E-05 47.4 14.6 240 562-826 25-265 (282)
361 3sbq_A Nitrous-oxide reductase 93.4 0.48 1.6E-05 54.0 12.4 129 645-775 322-493 (638)
362 3q6k_A 43.2 kDa salivary prote 93.3 11 0.00038 41.1 26.6 165 669-833 124-342 (381)
363 3kci_A Probable E3 ubiquitin-p 93.1 12 0.0004 40.8 28.4 229 604-841 54-341 (389)
364 1suu_A DNA gyrase subunit A; t 92.8 11 0.00039 39.7 27.9 229 570-802 6-281 (312)
365 3no0_A DNA gyrase subunit A; D 92.2 11 0.00039 39.0 20.4 197 603-804 24-246 (276)
366 1sqj_A OXG-RCBH, oligoxylogluc 92.0 21 0.00072 42.8 25.3 147 560-708 14-190 (789)
367 1zi0_A DNA gyrase subunit A; b 91.8 15 0.0005 38.8 26.4 232 570-804 1-277 (307)
368 3l6v_A GYRA, DNA gyrase subuni 91.6 18 0.0006 39.3 26.2 233 568-803 3-315 (370)
369 3mvd_K Regulator of chromosome 91.0 21 0.00072 39.0 35.5 226 604-841 76-370 (423)
370 3l6v_A GYRA, DNA gyrase subuni 90.9 21 0.0007 38.8 23.4 225 610-838 3-309 (370)
371 4hvt_A Ritya.17583.B, post-pro 89.7 13 0.00043 44.2 19.9 224 605-833 131-415 (711)
372 1sqj_A OXG-RCBH, oligoxylogluc 89.4 43 0.0015 40.2 25.3 144 602-748 14-188 (789)
373 3uc1_A DNA gyrase subunit A; D 89.4 25 0.00085 37.4 22.7 193 563-758 44-278 (327)
374 1zi0_A DNA gyrase subunit A; b 88.9 25 0.00087 36.9 23.3 223 612-838 1-270 (307)
375 3no0_A DNA gyrase subunit A; D 88.4 25 0.00087 36.3 21.2 194 561-758 24-245 (276)
376 3kci_A Probable E3 ubiquitin-p 87.0 37 0.0013 36.7 30.7 234 563-804 55-345 (389)
377 1suu_A DNA gyrase subunit A; t 85.8 38 0.0013 35.6 26.0 189 612-804 6-231 (312)
378 1wp5_A Topoisomerase IV; broke 84.7 44 0.0015 35.4 23.8 190 612-804 3-225 (323)
379 1uuj_A Platelet-activating fac 83.5 0.49 1.7E-05 40.1 2.1 32 10-41 11-42 (88)
380 2xtc_A F-box-like/WD repeat-co 80.4 1.3 4.4E-05 37.8 3.6 32 11-42 7-38 (90)
381 2cn3_A Xyloglucanase, beta-1,4 77.7 1.2E+02 0.0041 35.8 24.7 101 604-706 24-151 (737)
382 4gq2_M Nucleoporin NUP120; bet 77.0 1.4E+02 0.0049 36.4 23.3 37 690-726 238-274 (950)
383 3q6k_A 43.2 kDa salivary prote 76.7 89 0.0031 33.9 22.9 165 583-748 124-342 (381)
384 2cn3_A Xyloglucanase, beta-1,4 76.3 1.3E+02 0.0044 35.5 26.3 104 561-665 23-151 (737)
385 4gq2_M Nucleoporin NUP120; bet 72.0 1.3E+02 0.0045 36.8 19.9 35 774-808 236-270 (950)
386 4d9s_A UVB-resistance protein 72.0 1.1E+02 0.0039 32.9 35.1 267 561-841 16-353 (406)
387 2zux_A YESW protein; beta-prop 66.8 1.8E+02 0.0062 33.2 26.2 228 559-806 177-481 (591)
388 4d9s_A UVB-resistance protein 63.4 1.7E+02 0.0057 31.6 34.9 232 561-803 68-356 (406)
389 1a12_A RCC1, regulator of chro 62.0 1.8E+02 0.006 31.4 32.8 227 603-841 59-361 (413)
390 3zwu_A Alkaline phosphatase PH 55.2 88 0.003 36.0 13.0 59 690-748 478-549 (592)
391 4a9v_A PHOX; hydrolase, beta-p 51.4 1.7E+02 0.0058 33.6 14.2 59 690-748 478-549 (592)
392 1zvt_A Topoisomerase IV subuni 48.1 2E+02 0.007 29.0 13.2 142 574-718 4-163 (256)
393 3mez_B Mannose-specific lectin 47.7 1.2E+02 0.004 26.5 9.9 59 700-759 25-84 (113)
394 4h3o_A Lectin; cadmium, plant 46.6 1.1E+02 0.0039 26.2 9.5 25 734-759 54-78 (105)
395 3a0f_A Xyloglucanase; beta-pro 40.2 5.2E+02 0.018 30.4 30.7 149 559-709 19-203 (763)
396 4fhn_B Nucleoporin NUP120; pro 39.7 4.9E+02 0.017 32.3 17.4 37 690-726 240-276 (1139)
397 3zwu_A Alkaline phosphatase PH 37.8 79 0.0027 36.5 8.9 58 563-620 478-548 (592)
398 3of7_A Regulator of chromosome 36.6 4.6E+02 0.016 28.7 29.7 191 603-803 148-404 (473)
399 4a9v_A PHOX; hydrolase, beta-p 35.1 1.2E+02 0.004 34.9 9.5 60 562-621 477-549 (592)
400 3a0f_A Xyloglucanase; beta-pro 33.4 6.5E+02 0.022 29.5 26.0 147 601-750 19-203 (763)
401 3of7_A Regulator of chromosome 32.4 5.3E+02 0.018 28.2 26.8 147 646-802 148-339 (473)
402 1zvt_A Topoisomerase IV subuni 29.4 4.5E+02 0.015 26.4 16.9 142 615-759 3-163 (256)
403 4fhn_B Nucleoporin NUP120; pro 28.8 1.4E+02 0.0047 37.3 9.8 34 775-808 239-272 (1139)
404 3hx6_A Type 4 fimbrial biogene 28.7 6.9E+02 0.024 28.4 18.3 147 572-719 85-285 (570)
405 3mvd_K Regulator of chromosome 28.0 5.7E+02 0.02 27.2 36.9 190 561-759 127-374 (423)
406 3dzw_A Agglutinin; lectin, man 27.4 2.9E+02 0.0099 23.6 9.7 25 733-758 52-76 (109)
407 3f7f_A Nucleoporin NUP120; nuc 26.2 88 0.003 36.9 6.7 38 561-600 222-259 (729)
408 3f7f_A Nucleoporin NUP120; nuc 26.1 8.5E+02 0.029 28.5 15.4 37 647-686 223-259 (729)
409 1b2p_A Protein (lectin); manno 24.6 3.5E+02 0.012 23.6 11.3 24 734-758 64-87 (119)
410 2zux_A YESW protein; beta-prop 23.5 8.5E+02 0.029 27.7 20.6 153 644-808 177-404 (591)
411 3mez_A Mannose-specific lectin 21.2 1.2E+02 0.004 26.4 5.1 24 734-757 53-76 (111)
412 2d68_A FOP, FGFR1OP; alpha hel 21.2 87 0.003 26.0 3.9 32 10-41 19-50 (82)
413 4a9z_A Tumor protein 63; trans 20.4 74 0.0025 24.8 3.0 29 358-386 14-50 (61)
414 3a0c_A Mannose/sialic acid-bin 20.2 4.1E+02 0.014 22.7 10.7 24 734-758 54-77 (110)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.4e-41 Score=374.26 Aligned_cols=289 Identities=19% Similarity=0.367 Sum_probs=264.4
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003177 549 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 628 (842)
Q Consensus 549 ~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 628 (842)
.+.....+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++.+|++++.|+.|++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC---ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEE
Q 003177 629 WDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILA 704 (842)
Q Consensus 629 WDl~t~~---~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~ 704 (842)
||+.+.. .....+.+|...|.++.|++++. +++++.|+.|++||+++++++..+. +...|.+++|+|++..+++
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9998754 24567789999999999998753 6789999999999999999988887 4567999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--CCCceEEEEE
Q 003177 705 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVF 781 (842)
Q Consensus 705 ~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--~~~~I~sv~~ 781 (842)
++.|+.|++||++++.++..+.+|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+.. +...|.+++|
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~ 278 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEE
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEEEE
Confidence 99999999999999999999999999999999999999999999 999999999887 55555442 2357999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 782 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 782 spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+|++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++|+.||.|+|||
T Consensus 279 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999988776 7789999999999999999999999999999997
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.7e-42 Score=389.48 Aligned_cols=284 Identities=26% Similarity=0.486 Sum_probs=266.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003177 554 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 633 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t 633 (842)
..+.+|.+.|++++|+|++.+|++|+.||+|+|||+.+++.+.++.+|...|.+++|+|++++|++|+.|++|+|||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEE
Q 003177 634 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYIS 712 (842)
Q Consensus 634 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~ 712 (842)
.. ++..+.+|...|.+++|+|++. +|++++.|++|++||++++.++..+.. ...+.++.+++++..+++++.|+.|+
T Consensus 182 ~~-~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 FE-CIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp SC-EEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred Cc-eeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 55 5788899999999999999976 667999999999999999999988875 45699999999999999999999999
Q ss_pred EEECCCCeEEEEEeCCCCCEEEEEEcCC--------------------CCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003177 713 ILDVETQVCRLKLQGHKNQVHSVCWNTS--------------------GEYLASVS-DELVRVWSIGSGSKGECIHELSC 771 (842)
Q Consensus 713 IwDl~t~~~~~~l~~h~~~V~sl~~spd--------------------g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 771 (842)
+||++++.+...+.+|...|.+++|+|+ +.+|++++ |+.|++||++++ .++..+.+
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~~ 336 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVG 336 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEEC
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEEC
Confidence 9999999999999999999999999996 67899999 999999999988 78889999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 772 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 772 ~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|...|.+++|+|++.+|++++.|+.|++||+.+++++ .+.+|...|++++|+|++.+|++|+.||+|+||+
T Consensus 337 h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 9999999999999999999999999999999988766 7789999999999999999999999999999997
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.5e-41 Score=366.82 Aligned_cols=286 Identities=18% Similarity=0.324 Sum_probs=262.0
Q ss_pred EEEEecCCCCCeEEEEEcCC----CCEEEEEECCCcEEEEecCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003177 552 EFQLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT 625 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpd----g~~Lasgs~Dg~I~vwd~~t~~~--~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~ 625 (842)
.+..+.+|.+.|++|+|+++ +.+|++|+.|++|+|||+.+.+. ...+.+|...|.+++|++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 35667899999999999984 67999999999999999987654 4568899999999999999999999999999
Q ss_pred EEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEE
Q 003177 626 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA 704 (842)
Q Consensus 626 I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~ 704 (842)
|++||+.++. .+..+..|...+.+++|+|++. +|++++.||.|++||+++++....+.. ...+.+++|+|++++|++
T Consensus 104 i~lWd~~~~~-~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 104 IRLWDLENGK-QIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEEEETTTTE-EEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCCCC-EEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence 9999999865 4777888899999999999987 667999999999999999988877765 456999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003177 705 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 783 (842)
Q Consensus 705 ~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~sp 783 (842)
++.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++ |+.|+|||++++ ..+..+.+|...|.+++|+|
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCP 258 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECT
T ss_pred EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---ceeEEEcCCCCceEEEEECC
Confidence 99999999999999999999999999999999999999999999 999999999887 67888899999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 784 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 784 dg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++.+|++++.|+.|+|||+.+++++ .+.+|...|.+++|+|++++|++++.||.|+|||
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 9999999999999999999999887 6779999999999999999999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.8e-40 Score=364.80 Aligned_cols=289 Identities=17% Similarity=0.280 Sum_probs=261.6
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003177 550 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 629 (842)
Q Consensus 550 ~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 629 (842)
......+.+|.+.|+|++|+|++++||+|+.||+|+|||..+++....+..|...|.+++|+|++.+|++++.|+.|++|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCC-----ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeC--CCCE
Q 003177 630 DTENPD-----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP--RLGR 701 (842)
Q Consensus 630 Dl~t~~-----~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp--~g~~ 701 (842)
++.... .....+.+|...|.+++|+|++. .|++++.|++|++||+++++++..+.. ...+.++.|+| ++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 986432 23466778999999999999976 566999999999999999999988874 56789999987 4689
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC--CCceEE
Q 003177 702 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--GNKFHS 778 (842)
Q Consensus 702 l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~--~~~I~s 778 (842)
|++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |++|++||++.. ..+..+..+ ...+.+
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~ 289 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGASS 289 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCcccceeE
Confidence 99999999999999999999999999999999999999999999999 999999999886 455444433 357899
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 779 CVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 779 v~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++++|++|+.||+|+||+
T Consensus 290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999888776 7789999999999999999999999999999997
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.2e-41 Score=376.59 Aligned_cols=291 Identities=17% Similarity=0.337 Sum_probs=260.9
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003177 549 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 628 (842)
Q Consensus 549 ~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 628 (842)
.+....++.+|.+.|++++|+|++++|++|+.|++|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|+|
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC------ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe------ecCCeeEEEEe
Q 003177 629 WDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQ 696 (842)
Q Consensus 629 WDl~t~~------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~------~~~~i~~v~~s 696 (842)
||+.+.. .....+.+|...|.++.|+|++...|++|+.|++|++||+++++++..+. +...+.++.|+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9987532 13456789999999999999877788899999999999999999887763 34568999998
Q ss_pred C-CCCEEEEEEcCCeEEEEECC-CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC
Q 003177 697 P-RLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 773 (842)
Q Consensus 697 p-~g~~l~~~s~dg~I~IwDl~-t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~ 773 (842)
+ ++..+++++.|+.|++||++ ....+..+.+|...|.+++|+|++.+|++++ |++|+|||++++ .++..+..+.
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~ 291 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREP 291 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCCC
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecccc
Confidence 7 78899999999999999998 4577888999999999999999999999999 999999999987 5665554432
Q ss_pred -------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE----ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 774 -------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 774 -------~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~----~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
..|.+++|+|++.+|++++.|+.|++||+..++.+ .+ .+|.+.|++++|+|++.+|++|+.||+|+||
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 24889999999999999999999999999988876 33 5799999999999999999999999999999
Q ss_pred C
Q 003177 842 K 842 (842)
Q Consensus 842 d 842 (842)
+
T Consensus 372 ~ 372 (380)
T 3iz6_a 372 A 372 (380)
T ss_dssp E
T ss_pred e
Confidence 6
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.5e-39 Score=350.68 Aligned_cols=284 Identities=18% Similarity=0.312 Sum_probs=254.2
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 551 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
....++.+|.+.|++++|+|++++|++|+.||.|+|||+.++..+..+..|...|.+++|+|++++|++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce-eeEEe-ecCCeeEEEEeC-CCCEEEEEEc
Q 003177 631 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQP-RLGRILAAAI 707 (842)
Q Consensus 631 l~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~~-~~~~i~~v~~sp-~g~~l~~~s~ 707 (842)
+.++. .+..+.+|...|.+++|+|++. +|++|+.|++|++||++++.. ...+. +...|.+++|+| ++..|++++.
T Consensus 84 ~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGE-KVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCc-EEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 99876 4788899999999999999976 677999999999999988744 44444 456799999999 5789999999
Q ss_pred CCeEEEEECCCCeEEEEEe-CCCCCEEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003177 708 ENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 783 (842)
Q Consensus 708 dg~I~IwDl~t~~~~~~l~-~h~~~V~sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~sp 783 (842)
|+.|++||+++......+. +|...|..++|+| ++.+|++++ |+.|+|||++++ .++..+.+|...|.+++|+|
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECS
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEECC
Confidence 9999999998876655554 4668899999987 778999999 999999999987 88999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCC--EEEEEeCCCcEE
Q 003177 784 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVK 839 (842)
Q Consensus 784 dg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~--~Lasgs~DG~V~ 839 (842)
++.+|++++.|+.|++||+.+++++ .+..|...+.+++|+|++. +|++|+.||.+.
T Consensus 239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 9999999999999999999999887 6778899999999999885 688888777553
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.3e-39 Score=384.30 Aligned_cols=333 Identities=17% Similarity=0.276 Sum_probs=271.0
Q ss_pred cCCcccCCCceEEeccCCCceEEeecCCCCCCC------------------------------cccccccccCCCeeeeE
Q 003177 503 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPR------------------------------DRVGRSAEVGKGFTFTE 552 (842)
Q Consensus 503 ~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~------------------------------~~~~~~~~~~~g~~~~~ 552 (842)
....+.+...++++|+.|++|++|+........ +..+.++.+..+. .
T Consensus 63 ~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~---~ 139 (611)
T 1nr0_A 63 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT---S 139 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC---B
T ss_pred EEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC---C
Confidence 344455566899999999999999764321100 0011222222222 2
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003177 553 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 631 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSpdg~-~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 631 (842)
...+.+|.+.|++++|+|++. +|++|+.|++|++||..+++++.++.+|...|++++|+|++++|++++.|++|+|||+
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence 345789999999999999987 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEee-------cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-------------------
Q 003177 632 ENPDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------- 685 (842)
Q Consensus 632 ~t~~~~i~~~~-------~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~------------------- 685 (842)
.++.. +..+. +|...|.+++|+|++. +|++++.|++|++||+.+++++..+.
T Consensus 220 ~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (611)
T 1nr0_A 220 VDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297 (611)
T ss_dssp TTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred CCCcE-eeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence 87654 55553 7999999999999977 66799999999999999887665432
Q ss_pred -------------------------ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE-e-------------
Q 003177 686 -------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-Q------------- 726 (842)
Q Consensus 686 -------------------------~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l-~------------- 726 (842)
+...|.+++|+|++.+|++++.|+.|++||+.++.+...+ .
T Consensus 298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~ 377 (611)
T 1nr0_A 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 377 (611)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT
T ss_pred EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECC
Confidence 3456899999999999999999999999999876443221 0
Q ss_pred --------------------------------------------------------------------CCCCCEEEEEEc
Q 003177 727 --------------------------------------------------------------------GHKNQVHSVCWN 738 (842)
Q Consensus 727 --------------------------------------------------------------------~h~~~V~sl~~s 738 (842)
.|...+.+++|+
T Consensus 378 ~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~s 457 (611)
T 1nr0_A 378 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS 457 (611)
T ss_dssp TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred CCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEe
Confidence 123457889999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CeEEE---EccC
Q 003177 739 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-NKTLT---LSAH 813 (842)
Q Consensus 739 pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~-~~~~~---~~~h 813 (842)
|||++|++++ |+.|++||+.++.. ..+.. ..|...|.+++|+|++.+|++++.|++|++||+.+ ++++. +..|
T Consensus 458 pdg~~lasgs~D~~v~lwd~~~~~~-~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H 535 (611)
T 1nr0_A 458 NDKQFVAVGGQDSKVHVYKLSGASV-SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH 535 (611)
T ss_dssp TTSCEEEEEETTSEEEEEEEETTEE-EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC
T ss_pred CCCCEEEEeCCCCeEEEEEccCCce-eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec
Confidence 9999999999 99999999977521 22334 67889999999999999999999999999999987 55542 2349
Q ss_pred CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 814 DKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 814 ~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
...|++++|+||+++||+|+.|++|+|||
T Consensus 536 ~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 536 TAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 99999999999999999999999999996
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.4e-39 Score=350.13 Aligned_cols=288 Identities=19% Similarity=0.335 Sum_probs=251.5
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEecCC-----CeEEEEeccCCCCeEEEEEcCCCCEEEEEe
Q 003177 548 FTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSS 621 (842)
Q Consensus 548 ~~~~~i~~l~gH~~~V~sv~fSpdg-~~Lasgs~Dg~I~vwd~~t-----~~~~~~l~~h~~~I~~l~fspdg~~Latgs 621 (842)
..+....++.+|.+.|++++|+|++ ++|++|+.|++|++|++.. +..+..+.+|...|.+++|+|++.+|++++
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 4456678899999999999999965 8999999999999999863 345678899999999999999999999999
Q ss_pred CCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCC---
Q 003177 622 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR--- 698 (842)
Q Consensus 622 ~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~--- 698 (842)
.|++|+|||+.+++ .+..+.+|...|.+++|+|++. +|++++.|++|++||++.........+...+.++.|.|.
T Consensus 85 ~D~~v~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 85 WDKTLRLWDVATGE-TYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp TTSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC---
T ss_pred CCCEEEEEECCCCC-eeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCC
Confidence 99999999999865 4788899999999999999976 677999999999999985444334445677999999985
Q ss_pred ---CCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC
Q 003177 699 ---LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 774 (842)
Q Consensus 699 ---g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~ 774 (842)
+..+++++.|+.|++||+++.+....+.+|...|.+++|+|++.+|++++ |+.|+|||+.++ .++..+.. ..
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-~~ 238 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA-QD 238 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-CS
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC-CC
Confidence 44899999999999999999999999999999999999999999999999 999999999987 67777664 56
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-E--------ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 775 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 775 ~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~-~--------~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.|.+++|+|++.+|++++. +.|++|++.....+. + ..|...|.+++|+|||++|++|+.||.|+|||
T Consensus 239 ~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 8999999999998877765 469999998877652 2 23567899999999999999999999999996
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.9e-39 Score=354.35 Aligned_cols=292 Identities=25% Similarity=0.423 Sum_probs=250.2
Q ss_pred eeEEEEecCCCC-CeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEE---EeccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003177 550 FTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSPSLSRLATSSADRT 625 (842)
Q Consensus 550 ~~~i~~l~gH~~-~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~---~l~~h~~~I~~l~fspdg~~Latgs~Dg~ 625 (842)
+..+..+.+|.+ .|++++|+|+|++||+|+.|++|+|||+.++.... ...+|...|.+++|+|++++|++++.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 456788999998 99999999999999999999999999998876432 23689999999999999999999999999
Q ss_pred EEEEEcCCCC-ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce---eeEEe-ecCCeeEEEEeCCCC
Q 003177 626 VRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK-CQSGATQMRFQPRLG 700 (842)
Q Consensus 626 I~IWDl~t~~-~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~---i~~~~-~~~~i~~v~~sp~g~ 700 (842)
|+|||+.... ..+..+.+|...|.+++|+|++. +|++|+.|++|++||++++.. +..+. +...|.+++|+|++.
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 9999998765 34678889999999999999976 677999999999999987643 33443 356799999999999
Q ss_pred EEEEEEcCCeEEEEECCCCe--EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC------------cee
Q 003177 701 RILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------GEC 765 (842)
Q Consensus 701 ~l~~~s~dg~I~IwDl~t~~--~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~------------~~~ 765 (842)
+|++++.|+.|++||++++. +...+.+|...|.+++|+|++.+|++++ |++|+|||+..... ..+
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 99999999999999998874 5578889999999999999999999999 99999999743211 133
Q ss_pred EEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------EE--EEccCCCCeeEEEEeCCC-CEEEEEe
Q 003177 766 IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TL--TLSAHDKLVSSLAASTVN-GMVASAS 833 (842)
Q Consensus 766 i~~~~~-~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~--------~~--~~~~h~~~V~sla~spdg-~~Lasgs 833 (842)
+..+.. |...|.+++|++++..|++++.|+.|++|+...+. .. ...+|...|++++|+|++ .+||+|+
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 444544 77899999999999999999999999999987542 11 235899999999999998 4999999
Q ss_pred CCCcEEEcC
Q 003177 834 HDKCVKIWK 842 (842)
Q Consensus 834 ~DG~V~IWd 842 (842)
.||+|+||+
T Consensus 324 ~Dg~v~~W~ 332 (345)
T 3fm0_A 324 DDGEVAFWK 332 (345)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999999996
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.7e-39 Score=382.27 Aligned_cols=306 Identities=22% Similarity=0.339 Sum_probs=260.2
Q ss_pred eEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCC
Q 003177 513 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 592 (842)
Q Consensus 513 ~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~ 592 (842)
.+++|+.|++|++|.... ......+.+|.+.|++++|+|||++||+|+.|++|+|||+.++
T Consensus 162 ~l~s~s~D~~v~lwd~~~-------------------~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEGPP-------------------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp EEEEEETTSCEEEEETTT-------------------BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EEEEEeCCCeEEEEECCC-------------------CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence 589999999999995321 2345678999999999999999999999999999999999999
Q ss_pred eEEEEec-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-----------------------------
Q 003177 593 TVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----------------------------- 636 (842)
Q Consensus 593 ~~~~~l~-------~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~----------------------------- 636 (842)
+.+..+. +|.+.|.+++|+|++++|++++.|++|+|||+.++..
T Consensus 223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 302 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 302 (611)
T ss_dssp CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence 9988884 7999999999999999999999999999999986532
Q ss_pred -------------eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEE-------------------
Q 003177 637 -------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------------------- 684 (842)
Q Consensus 637 -------------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~------------------- 684 (842)
....+.+|...|.+++|+|++. +|++++.|++|++||+.++++...+
T Consensus 303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l 381 (611)
T 1nr0_A 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381 (611)
T ss_dssp TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence 1234457999999999999977 6679999999999999876543221
Q ss_pred ----------------------------------------------------------------eecCCeeEEEEeCCCC
Q 003177 685 ----------------------------------------------------------------KCQSGATQMRFQPRLG 700 (842)
Q Consensus 685 ----------------------------------------------------------------~~~~~i~~v~~sp~g~ 700 (842)
.+...+.+++|+|++.
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~ 461 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 461 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence 0113367899999999
Q ss_pred EEEEEEcCCeEEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE--eecCCCc
Q 003177 701 RILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE--LSCTGNK 775 (842)
Q Consensus 701 ~l~~~s~dg~I~IwDl~t~~~--~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~--~~~~~~~ 775 (842)
++++++.|+.|++||+.++.. +.. .+|...|++++|+|+|++|++++ |++|++||+.+.. +++.. +..|...
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~ 538 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAK 538 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSC
T ss_pred EEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeeeeeeeecccc
Confidence 999999999999999987653 333 67999999999999999999999 9999999998731 33332 3348899
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--E-EEEccC-CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 776 FHSCVFHPTFPSLLVIGCYETLELWNMTENK--T-LTLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 776 I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~--~-~~~~~h-~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|.+++|+|++++|++++.|++|+|||+.++. . ..+.+| ...|.+++|+|++. |++++.||+|+|||
T Consensus 539 V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 539 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred eeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence 9999999999999999999999999998764 2 355688 89999999999998 99999999999996
No 11
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8e-39 Score=359.73 Aligned_cols=282 Identities=28% Similarity=0.455 Sum_probs=251.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCC------------------CeEEEEEcCCCCEEEE
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------------------WITDVRFSPSLSRLAT 619 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~------------------~I~~l~fspdg~~Lat 619 (842)
+|.+.|+|++|+|||++||+|+ ++.++||++.+++.+..+..|.. .|++++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 68999999999998888765542 4999999999999999
Q ss_pred EeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeC-C
Q 003177 620 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-R 698 (842)
Q Consensus 620 gs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp-~ 698 (842)
|+.|++|+|||+.++. .+..+.+|...|.+++|+|++. +|++++.|++|++||++++++...+.....+.+++|+| +
T Consensus 141 ~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 9999999999999764 4778899999999999999987 56699999999999999999999998888999999999 8
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEE-------eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC--------
Q 003177 699 LGRILAAAIENYISILDVETQVCRLKL-------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-------- 762 (842)
Q Consensus 699 g~~l~~~s~dg~I~IwDl~t~~~~~~l-------~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-------- 762 (842)
+.++++++.|+.|++||++++..+..+ .+|...|.+++|+|++.+|++++ |+.|++||+++...
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 899999999999999999999887766 57899999999999999999999 99999999976421
Q ss_pred -ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeC------CCCEEEEEeC
Q 003177 763 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST------VNGMVASASH 834 (842)
Q Consensus 763 -~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~sp------dg~~Lasgs~ 834 (842)
..+...+.+|...|.+++|++++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|++ ++.+|++|+.
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC
Confidence 2456677889999999999999999999999999999999999877 6789999999999986 6789999999
Q ss_pred CCcEEEcC
Q 003177 835 DKCVKIWK 842 (842)
Q Consensus 835 DG~V~IWd 842 (842)
||+|+||+
T Consensus 379 Dg~i~iW~ 386 (393)
T 1erj_A 379 DCKARIWK 386 (393)
T ss_dssp TSEEEEEE
T ss_pred CCcEEECc
Confidence 99999996
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2e-38 Score=343.25 Aligned_cols=288 Identities=24% Similarity=0.456 Sum_probs=259.0
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003177 550 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 629 (842)
Q Consensus 550 ~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 629 (842)
+....++.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcC
Q 003177 630 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 708 (842)
Q Consensus 630 Dl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~d 708 (842)
|+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++++..+.. ...+.+++|+|++..+++++.|
T Consensus 93 d~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 93 DVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp ETTTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCc-EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 999865 4788899999999999999976 677999999999999999998888764 5679999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE---EEEEeC
Q 003177 709 NYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH---SCVFHP 783 (842)
Q Consensus 709 g~I~IwDl~t~~~~~~l~-~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~---sv~~sp 783 (842)
+.|++||+++++.+..+. .+...+.+++|+|++.+|++++ |+.|++||++++ .++..+..|...+. .....+
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEECS
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEeC
Confidence 999999999998877764 4667899999999999999999 999999999987 77777777765432 233346
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEe--CCCcEEEcC
Q 003177 784 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 842 (842)
Q Consensus 784 dg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs--~DG~V~IWd 842 (842)
++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++ .|+.|+||+
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 7889999999999999999999887 7789999999999999999999997 699999995
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.5e-38 Score=347.44 Aligned_cols=287 Identities=18% Similarity=0.355 Sum_probs=243.7
Q ss_pred eeeEEEEecCCCCCeEEEEE-----cC-CCCEEEEEECCCcEEEEecCC-------CeEEEEeccCCCCeEEEEEcCCCC
Q 003177 549 TFTEFQLIPASTSKVESCHF-----SP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLS 615 (842)
Q Consensus 549 ~~~~i~~l~gH~~~V~sv~f-----Sp-dg~~Lasgs~Dg~I~vwd~~t-------~~~~~~l~~h~~~I~~l~fspdg~ 615 (842)
.+....++.+|.+.|++++| ++ ++++|++|+.|++|+|||+.+ +.....+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 34567789999999999999 77 999999999999999999874 346678899999999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEE---eecCCeeE
Q 003177 616 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQ 692 (842)
Q Consensus 616 ~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~---~~~~~i~~ 692 (842)
+|++++.|++|+|||+.++. .+..+.+|...|.+++|+|++. +|++++.|++|++||+......... .+...+.+
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp EEEEEETTSEEEEEETTSSC-EEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred EEEEEcCCCcEEEEECCCCc-EEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence 99999999999999999865 4788899999999999999977 5668999999999999843332222 24566999
Q ss_pred EEEeCCC----------CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003177 693 MRFQPRL----------GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 761 (842)
Q Consensus 693 v~~sp~g----------~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~ 761 (842)
++|+|++ .++++++.|+.|++|| ........+.+|...|.+++|+|++++|++++ |+.|+|||+....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999986 6899999999999999 45677788899999999999999999999999 9999999995442
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE---EEc-----------cCCCCeeEEEEeCCCC
Q 003177 762 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLS-----------AHDKLVSSLAASTVNG 827 (842)
Q Consensus 762 ~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~---~~~-----------~h~~~V~sla~spdg~ 827 (842)
.....+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++.. .+. +|...|.+++|+|+++
T Consensus 247 --~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 247 --YPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp --SCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred --ccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 222233 2456799999999998665 556888999999876533 222 6788899999999999
Q ss_pred EEEEEeCCCcEEEcC
Q 003177 828 MVASASHDKCVKIWK 842 (842)
Q Consensus 828 ~Lasgs~DG~V~IWd 842 (842)
+|++|+.||.|+||+
T Consensus 323 ~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFS 337 (343)
T ss_dssp CEEEEETTSEEEEEE
T ss_pred eEEEecCCceEEEEE
Confidence 999999999999996
No 14
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.5e-37 Score=364.58 Aligned_cols=307 Identities=27% Similarity=0.444 Sum_probs=270.5
Q ss_pred cccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 003177 506 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 585 (842)
Q Consensus 506 ~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~ 585 (842)
.+.+....+++++.|+.+++|.... ..+..+.+|.+.|.+++|+|++++|++++.|+.|+
T Consensus 269 ~~~~d~~~l~~~~~d~~i~~w~~~~--------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~ 328 (577)
T 2ymu_A 269 AFRPDGQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 328 (577)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTS--------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEcCCCCEEEEEeCCCEEEEEeCCC--------------------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEE
Confidence 3444557888999999999995321 13456789999999999999999999999999999
Q ss_pred EEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEe
Q 003177 586 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 665 (842)
Q Consensus 586 vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 665 (842)
+||... ..+..+.+|...|.+++|+|++++|++++.|+.|++||... ..+..+.+|...|.+++|+|++. +|++++
T Consensus 329 ~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~ 404 (577)
T 2ymu_A 329 LWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQ-TIASAS 404 (577)
T ss_dssp EEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--CEEEEEECCSSCEEEEEECTTSS-CEEEEE
T ss_pred EEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--CEEEEecCCCCCeEEEEECCCCC-EEEEEe
Confidence 999765 45667889999999999999999999999999999999653 35778889999999999999987 566889
Q ss_pred CCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 003177 666 NNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 744 (842)
Q Consensus 666 ~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~L 744 (842)
.|+.|++||.. ++.+..+. +...|.+++|+|++.++++++.|+.|++||. +++.+..+.+|...|++++|+|++++|
T Consensus 405 ~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 405 DDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI 482 (577)
T ss_dssp TTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEE
T ss_pred CCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEE
Confidence 99999999965 55555554 4677999999999999999999999999996 567788889999999999999999999
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEe
Q 003177 745 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 823 (842)
Q Consensus 745 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~s 823 (842)
++++ |+.|+|||.. + +++..+..|...|++++|+|++++|++++.|+.|+|||.....+..+.+|.+.|++++|+
T Consensus 483 as~~~d~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs 558 (577)
T 2ymu_A 483 ASASDDKTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 558 (577)
T ss_dssp EEEETTSEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEEC
T ss_pred EEEeCCCEEEEEcCC-C---CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEc
Confidence 9999 9999999953 3 678889999999999999999999999999999999997655455888999999999999
Q ss_pred CCCCEEEEEeCCCcEEEcC
Q 003177 824 TVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 824 pdg~~Lasgs~DG~V~IWd 842 (842)
||+++|+|++.||+|+|||
T Consensus 559 ~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 559 PDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999998
No 15
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=350.65 Aligned_cols=279 Identities=15% Similarity=0.210 Sum_probs=235.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC-----------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 626 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t-----------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 626 (842)
.|...|.+++|+|||++|++++ |+++++||... .........|...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4677799999999999999887 67888886321 01111122466789999999985 78899999999
Q ss_pred EEEEcCCCCcee---eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCC-E
Q 003177 627 RVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-R 701 (842)
Q Consensus 627 ~IWDl~t~~~~i---~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~-~ 701 (842)
+|||+.+++... ....+|...|++++|+|++. +|++|+.|++|++||+++++++..+.. ...|.+++|++++. .
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 999999876432 23458999999999999977 677999999999999999999998874 66799999999875 6
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003177 702 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 777 (842)
Q Consensus 702 l~~~s~dg~I~IwDl~t~~~~~~l~--~h~~~V~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 777 (842)
|++++.|+.|++||++++++...+. .|...+.+++|+|+ +.+|++++ |+.|+|||++++ +++..+..|...|+
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---~~~~~~~~h~~~v~ 261 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---SCVLSSAVHSQCVT 261 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC---cEEEEEcCCCCCEE
Confidence 7889999999999999998877764 45667999999995 56888888 999999999987 77888999999999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEeCCCcEEEcC
Q 003177 778 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 842 (842)
Q Consensus 778 sv~~spdg-~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~-~Lasgs~DG~V~IWd 842 (842)
+++|+|++ .+|++++.|++|+|||+.+++++.+.+|.+.|++++|+|+++ +|++|+.||+|++|+
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 99999998 578899999999999999999999999999999999999986 678999999999995
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-38 Score=342.61 Aligned_cols=289 Identities=21% Similarity=0.335 Sum_probs=237.8
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCC--eEEEEe-cc-CCCCeEEEEEcCCCCEEEEEeCCCe
Q 003177 550 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTL-EE-HTQWITDVRFSPSLSRLATSSADRT 625 (842)
Q Consensus 550 ~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~--~~~~~l-~~-h~~~I~~l~fspdg~~Latgs~Dg~ 625 (842)
+..+..+.+|.+.|++++|+++ +||+|+.|++|+|||+.++ ..+..+ .. |...|.+++|+|++.+|++++.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 3457788999999999999987 9999999999999999874 455666 44 9999999999999999999999999
Q ss_pred EEEEEcCCC------CceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----ceeeEEe-ecCCeeEEE
Q 003177 626 VRVWDTENP------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGATQMR 694 (842)
Q Consensus 626 I~IWDl~t~------~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~----~~i~~~~-~~~~i~~v~ 694 (842)
|+|||+... ...+..+.+|...|.+++|+|++. +|++|+.|++|++||++.. +++..+. +...|.+++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999998532 134567889999999999999976 6779999999999999532 4555554 456799999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCC--eEEEEEeCCCCCEEEEEEcCC--CCEEEEEe-CCeEEEEEcCCCCCc-----e
Q 003177 695 FQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKG-----E 764 (842)
Q Consensus 695 ~sp~g~~l~~~s~dg~I~IwDl~t~--~~~~~l~~h~~~V~sl~~spd--g~~Lasgs-Dg~I~IwDl~s~~~~-----~ 764 (842)
|+|++..|++++.|+.|++||..++ +++..+.+|...|.+++|+|+ +.+|++++ |++|+|||+..+... .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 9999999999999999999999876 678889999999999999998 77899988 999999998754211 2
Q ss_pred eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EE-E-EccCCC-CeeEEEEeC--CCCEEEEEeCCC
Q 003177 765 CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--TL-T-LSAHDK-LVSSLAAST--VNGMVASASHDK 836 (842)
Q Consensus 765 ~i~~~~~-~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~--~~-~-~~~h~~-~V~sla~sp--dg~~Lasgs~DG 836 (842)
+...+.. |...|.+++|++++ +|++++.|+.|+|||..+++ .+ . ...|.. .|++++|+| ++.+|++|+.||
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 3444444 78899999999765 79999999999999998874 23 2 357877 899999999 688999999999
Q ss_pred cEEEcC
Q 003177 837 CVKIWK 842 (842)
Q Consensus 837 ~V~IWd 842 (842)
+|+|||
T Consensus 320 ~v~~W~ 325 (330)
T 2hes_X 320 IVNFWS 325 (330)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999996
No 17
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.4e-38 Score=351.64 Aligned_cols=281 Identities=13% Similarity=0.169 Sum_probs=237.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEEC------CCcEEEEecCCCeEE----EEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 003177 557 PASTSKVESCHFSPDGKLLATGGH------DKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTV 626 (842)
Q Consensus 557 ~gH~~~V~sv~fSpdg~~Lasgs~------Dg~I~vwd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 626 (842)
.+|.+.|++|+|||||++||+|+. |+.|++|+..++... .....|...|++++|+|++. +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 479999999999999999999997 778999998776543 23346889999999999975 5667889999
Q ss_pred EEEEcCCCCcee---eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCC-E
Q 003177 627 RVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-R 701 (842)
Q Consensus 627 ~IWDl~t~~~~i---~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~-~ 701 (842)
+|||+.+++... ....+|...|.+++|+|++. +|++++.|+.|++||+++++++..+.. ...|.+++|++++. .
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence 999998765321 24457999999999999977 667999999999999999999988874 56799999999875 6
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003177 702 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 777 (842)
Q Consensus 702 l~~~s~dg~I~IwDl~t~~~~~~l~--~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 777 (842)
+++++.|+.|++||++++++...+. .|...+.+++|+|++ .+|++++ |+.|++||++++ .++..+..|...|+
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v~ 273 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---DSAQTSAVHSQNIT 273 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---GGCEEECCCSSCEE
T ss_pred eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC---cEeEEEeccceeEE
Confidence 8899999999999999987665543 467789999999974 6788888 999999999987 67788889999999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeC-CCCEEEEEeCCCcEEEcC
Q 003177 778 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 842 (842)
Q Consensus 778 sv~~spdg-~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~sp-dg~~Lasgs~DG~V~IWd 842 (842)
+++|+|++ .+|++++.|++|+|||+.+++++...+|.+.|++|+|+| ++.+|++|+.||+|+|||
T Consensus 274 ~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 274 GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 99999987 578899999999999999999998889999999999998 789999999999999996
No 18
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-37 Score=336.15 Aligned_cols=284 Identities=17% Similarity=0.249 Sum_probs=254.9
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003177 552 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 631 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 631 (842)
....+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCceee-----------EEe-ecC--CeeE
Q 003177 632 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAG-----------VFK-CQS--GATQ 692 (842)
Q Consensus 632 ~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~~i~-----------~~~-~~~--~i~~ 692 (842)
.++.. +..+. |...|.+++|+|++. ++++++.+ +.|++||+....... .+. +.. .+.+
T Consensus 104 ~~~~~-~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 104 SNGQC-VATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp TTCCE-EEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CCCcE-EEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 98664 55555 888999999999987 55567777 999999998664322 222 122 7999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCC-CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee
Q 003177 693 MRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 770 (842)
Q Consensus 693 v~~sp~g~~l~~~s~dg~I~IwDl~t-~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~ 770 (842)
++|+|++..+++++.||.|++||+++ ...+..+..|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+.
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~ 257 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKYE 257 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---ceeeeec
Confidence 99999999999999999999999999 788999999999999999999999999998 999999999987 5566655
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCC--------------eEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCC
Q 003177 771 CTGNKFHSCVFHPTFPSLLVIGCYE--------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 835 (842)
Q Consensus 771 ~~~~~I~sv~~spdg~~L~sgs~dg--------------~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~D 835 (842)
+...+..++|+|++.++++++.++ .|++||+.+++.+ .+.+|...|++++|+|++++|++++.|
T Consensus 258 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 258 -TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp -CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred -CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence 678899999999999999999988 8999999999887 677899999999999999999999999
Q ss_pred CcEEEcC
Q 003177 836 KCVKIWK 842 (842)
Q Consensus 836 G~V~IWd 842 (842)
|.|+||+
T Consensus 337 g~v~iw~ 343 (369)
T 3zwl_B 337 GFIRLHH 343 (369)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 9999996
No 19
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.5e-37 Score=334.57 Aligned_cols=272 Identities=20% Similarity=0.287 Sum_probs=248.6
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEec
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~ 589 (842)
...++++|+.|++|++|...+. .......+.+|...|.+++|++++.++++++.|++|++||+
T Consensus 47 ~~~~l~tgs~D~~v~vW~~~~~-----------------~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 47 NSETVVTGSLDDLVKVWKWRDE-----------------RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109 (321)
T ss_dssp --CEEEEEETTSCEEEEEEETT-----------------EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEEcCCCCEEEEECCCC-----------------CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 3468999999999999965322 12334568999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCc
Q 003177 590 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 669 (842)
Q Consensus 590 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 669 (842)
.+++.+..+..|...+.+++|+|++++|++++.||.|++||+.++.. ...+..|...|.+++|+|++. +|++++.||.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~ 187 (321)
T 3ow8_A 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGK-YLASGAIDGI 187 (321)
T ss_dssp TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCC-EEEEEcCCCe
Confidence 99999999999999999999999999999999999999999998664 667788899999999999987 6779999999
Q ss_pred EEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 003177 670 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 748 (842)
Q Consensus 670 I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs 748 (842)
|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||++++..+..+.+|...|.+++|+|++.+|++++
T Consensus 188 i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s 267 (321)
T 3ow8_A 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS 267 (321)
T ss_dssp EEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 99999999999888874 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 749 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 749 -Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
|+.|+|||+.++ .++..+..|...|.+++|+|++.+|++++.|+.|+|||+.
T Consensus 268 ~D~~v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 268 SDKSVKVWDVGTR---TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCcEEEEeCCCC---EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999987 8899999999999999999999999999999999999963
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.7e-36 Score=353.82 Aligned_cols=306 Identities=26% Similarity=0.445 Sum_probs=271.2
Q ss_pred ccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003177 507 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 586 (842)
Q Consensus 507 l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~v 586 (842)
+.....++++|+.|+.+++|.... ..+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 229 ~s~dg~~l~~~~~d~~i~~w~~~~--------------------~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~ 288 (577)
T 2ymu_A 229 FSPDGQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288 (577)
T ss_dssp ECTTSSCEEEEETTSCEEEECTTS--------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCC--------------------CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 344456788999999999995311 235678899999999999999999999999999999
Q ss_pred EecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeC
Q 003177 587 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 666 (842)
Q Consensus 587 wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~ 666 (842)
||. +++.+..+.+|...|.+++|+|++.+|++++.|++|++||+... .+..+.+|...|.+++|+|++. ++++++.
T Consensus 289 w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~ 364 (577)
T 2ymu_A 289 WNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQ-TIASASD 364 (577)
T ss_dssp EET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred EeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eeEEEeCCCCCEEEEEECCCCC-EEEEEeC
Confidence 996 45778889999999999999999999999999999999998753 4677889999999999999987 6668999
Q ss_pred CCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEE
Q 003177 667 NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 745 (842)
Q Consensus 667 Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~La 745 (842)
|+.|++||.. ++.+..+. +...|.+++|+|++.+|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|+
T Consensus 365 dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 442 (577)
T 2ymu_A 365 DKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIA 442 (577)
T ss_dssp TSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEE
Confidence 9999999965 56666555 4677999999999999999999999999995 5677888899999999999999999999
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeC
Q 003177 746 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST 824 (842)
Q Consensus 746 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~sp 824 (842)
+++ |+.|++||+.. ..+..+..|...|.+++|+|++.+|++++.|+.|++||........+.+|...|++++|+|
T Consensus 443 ~~~~d~~v~~w~~~~----~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~ 518 (577)
T 2ymu_A 443 SASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 518 (577)
T ss_dssp EEETTSEEEEEETTS----CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECT
T ss_pred EEcCCCEEEEEECCC----CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcC
Confidence 999 99999999643 5778888999999999999999999999999999999976555558889999999999999
Q ss_pred CCCEEEEEeCCCcEEEcC
Q 003177 825 VNGMVASASHDKCVKIWK 842 (842)
Q Consensus 825 dg~~Lasgs~DG~V~IWd 842 (842)
++++|++++.||.|+|||
T Consensus 519 dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 519 DGQTIASASDDKTVKLWN 536 (577)
T ss_dssp TSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECcCEEEEEe
Confidence 999999999999999997
No 21
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-37 Score=349.55 Aligned_cols=268 Identities=24% Similarity=0.455 Sum_probs=245.8
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 591 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t 591 (842)
.++++|+.|++|++|+.... .....+.+|.+.|++++|+|++++|++|+.|++|+|||+.+
T Consensus 121 ~~l~s~s~Dg~i~vwd~~~~-------------------~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 121 SVMVSASEDATIKVWDYETG-------------------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp SEEEEEESSSCEEEEETTTC-------------------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred CEEEEEeCCCeEEEEECCCC-------------------cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 68999999999999976433 12467889999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEE
Q 003177 592 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 671 (842)
Q Consensus 592 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 671 (842)
++++.++.+|...|.+++|+|++.+|++|+.|++|++||+.++. ++..+.+|...|.+++|++++. +|++|+.|++|+
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVR 259 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEE
Confidence 99999999999999999999999999999999999999999865 5788999999999999999976 777999999999
Q ss_pred EEECCCCceeeEEee-cCCeeEEEEeCC--------------------CCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 003177 672 YWSINNGSCAGVFKC-QSGATQMRFQPR--------------------LGRILAAAIENYISILDVETQVCRLKLQGHKN 730 (842)
Q Consensus 672 vwDl~t~~~i~~~~~-~~~i~~v~~sp~--------------------g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~ 730 (842)
+||+.++++...+.. ...|.+++|+|+ +.++++++.|+.|++||++++.++..+.+|..
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence 999999998887754 567999999996 66899999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 731 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 731 ~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
.|++++|+|++.+|++++ |+.|+|||+.++ .++..+..|...|++++|+|++.+|++++.|++|+||+++
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999 999999999887 6778888999999999999999999999999999999863
No 22
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.9e-36 Score=327.71 Aligned_cols=287 Identities=19% Similarity=0.341 Sum_probs=247.2
Q ss_pred eeeEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEecCCC-----eEEEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 003177 549 TFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSPSLSRLATSSA 622 (842)
Q Consensus 549 ~~~~i~~l~gH~~~V~sv~fSpd-g~~Lasgs~Dg~I~vwd~~t~-----~~~~~l~~h~~~I~~l~fspdg~~Latgs~ 622 (842)
.+....+|+||++.|++|+|+|+ +++||||+.|++|+|||+.+. .+...+.+|...|.+++|+|++++|++++.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 34556789999999999999997 689999999999999998754 356788999999999999999999999999
Q ss_pred CCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe--ecCCeeEEEEeCCC-
Q 003177 623 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRL- 699 (842)
Q Consensus 623 Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~~v~~sp~g- 699 (842)
|+.|++|+..... .......+...+..+.+++++. +|++++.|+.+++||+.......... +...+..++|++++
T Consensus 107 d~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 107 DGTLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp TSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred cccceEEeecccc-eeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 9999999998755 3566677888899999999876 56689999999999998665443322 35678899998764
Q ss_pred -CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003177 700 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 777 (842)
Q Consensus 700 -~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 777 (842)
..+++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++++ |+.|++||+++. ..+..+.. ...+.
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 260 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG-GDIIN 260 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-SSCEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---ceeeeecC-CceEE
Confidence 4678889999999999999999999999999999999999999999999 999999999987 66666664 56899
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----------EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 778 SCVFHPTFPSLLVIGCYETLELWNMTENKTL----------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 778 sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~----------~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+++|+|++. +++++.|+.|++||++++..+ ....|...|++++|+|++++|++|+.||.|+|||
T Consensus 261 ~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 261 ALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 999999876 667778999999999988765 2346889999999999999999999999999997
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.4e-36 Score=328.89 Aligned_cols=279 Identities=18% Similarity=0.250 Sum_probs=251.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeE---EEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003177 557 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDT 631 (842)
Q Consensus 557 ~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~---~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 631 (842)
.+|.+.|++++|+|++++|++++ ||.|++||+.+++. +..+. .|...|.+++|+|++++|++++.|+.|++||+
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 47999999999999999999998 99999999987643 23333 79999999999999999999999999999999
Q ss_pred CCCCc-eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCC
Q 003177 632 ENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIEN 709 (842)
Q Consensus 632 ~t~~~-~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg 709 (842)
.++.. ....+..|...|.+++|+|++. ++++++.||.|++||+++++.+..+. +...+.+++|+|++..+++++.|+
T Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 205 (337)
T 1gxr_A 127 AAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCC
Confidence 87653 3556778999999999999876 66688899999999999999888887 466799999999999999999999
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003177 710 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 788 (842)
Q Consensus 710 ~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L 788 (842)
.|++||+++++.+..+. +...+.+++|+|++.+|++++ |+.|++||+.+.. ...+..|...|.+++|+|++.+|
T Consensus 206 ~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l 280 (337)
T 1gxr_A 206 TVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGKWF 280 (337)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSSEE
T ss_pred cEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCCEE
Confidence 99999999998888775 788999999999999999999 9999999998863 34567788999999999999999
Q ss_pred EEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 789 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 789 ~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++++.|+.|++||+.+++.+....|...|.+++|+|++++|++++.||.|+|||
T Consensus 281 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 281 VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 999999999999999999887778999999999999999999999999999996
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-37 Score=341.72 Aligned_cols=319 Identities=13% Similarity=0.166 Sum_probs=266.5
Q ss_pred Cc-eEEeccCCCceEEeec----CCCCCCCc--ccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCc
Q 003177 511 DR-FVDDGSLDDNVESFLS----PDDADPRD--RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 583 (842)
Q Consensus 511 ~~-~l~~Gs~d~~v~~~~s----~~~~~~~~--~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~ 583 (842)
.. ++++|+.|+.|++|.. ........ ...... ..+.......+|.+.|++++|+|++++|++|+.||.
T Consensus 57 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 131 (425)
T 1r5m_A 57 DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELR-----HPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGE 131 (425)
T ss_dssp CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEE-----CCCCCC------CBCEEEEEECTTSSEEEEEETTSC
T ss_pred CCcEEEEecCCceEEEEEEecccCCcccccccccccccc-----ccccccccccCCCCceEEEEEcCCCCEEEEEeCCCe
Confidence 35 8999999999999976 33211000 000000 000001122347889999999999999999999999
Q ss_pred EEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccc---------------e
Q 003177 584 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT---------------V 648 (842)
Q Consensus 584 I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~---------------V 648 (842)
|++|| .+++.+..+..|...|.+++|+|++.+|++++.|+.|++||+.++. .+..+..+... |
T Consensus 132 i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (425)
T 1r5m_A 132 LRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT-VMQHFELKETGGSSINAENHSGDGSLG 209 (425)
T ss_dssp EEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE-EEEEECCC---------------CCCB
T ss_pred EEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-EEEEeeccccCccceeeccccCCccee
Confidence 99999 6778888999999999999999999999999999999999998765 46666666666 9
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 003177 649 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 727 (842)
Q Consensus 649 ~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~ 727 (842)
.+++|++++ .+++++.||.|++||+++++.+..+. +...+.+++|+|++.+|++++.|+.|++||+++++.+..+..
T Consensus 210 ~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 287 (425)
T 1r5m_A 210 VDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG 287 (425)
T ss_dssp SCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECC
T ss_pred eEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecC
Confidence 999999874 46688899999999999998887775 456799999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003177 728 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 806 (842)
Q Consensus 728 h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~ 806 (842)
|...|.+++|+|++ +|++++ |+.|++||+.++ ..+..+..+...|.+++|+|++.+|++++.|+.|++||+.+++
T Consensus 288 ~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 288 HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 99999999999999 888888 999999999887 7888888899999999999999999999999999999998877
Q ss_pred --------------------EE-EEccCCC--CeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 807 --------------------TL-TLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 807 --------------------~~-~~~~h~~--~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.+ .+..|.. .|++++|+|++++|++++.||.|+|||
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 364 SKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp C--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred cceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence 55 6778866 999999999999999999999999996
No 25
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.1e-37 Score=339.90 Aligned_cols=286 Identities=14% Similarity=0.152 Sum_probs=255.4
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCe------EEEEeccCCCCeEEEEEcCC----C---CEE
Q 003177 551 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPS----L---SRL 617 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~------~~~~l~~h~~~I~~l~fspd----g---~~L 617 (842)
.....+.+|.+.|++|+|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|++++|+|+ + .+|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 45677899999999999998 799999999999999999887 67888899999999999999 9 999
Q ss_pred EEEeCCCeEEEEEcCCCCc----eeeEeecC-----ccceEEEEEc----CCCCcEEEEEeCCCcEEEEECCC------C
Q 003177 618 ATSSADRTVRVWDTENPDY----SLRTFTGH-----STTVMSLDFH----PSKEDLLCSCDNNSEIRYWSINN------G 678 (842)
Q Consensus 618 atgs~Dg~I~IWDl~t~~~----~i~~~~~h-----~~~V~sl~fs----pdg~~llasgs~Dg~I~vwDl~t------~ 678 (842)
++++.||.|++||+.++.. .+..+..| ...|.+++|+ |++..+|++++.||.|++||+++ +
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 9999999999999987653 15677778 5899999999 98875377999999999999998 6
Q ss_pred ceee-----EEe--------ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeC---C---CCCEEEEEEcC
Q 003177 679 SCAG-----VFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---H---KNQVHSVCWNT 739 (842)
Q Consensus 679 ~~i~-----~~~--------~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~---h---~~~V~sl~~sp 739 (842)
+.+. .+. +...+.+++|+|++ .+++++.|+.|++||+++++.+..+.. | ...|.+++|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence 6665 554 36779999999999 999999999999999999999999998 9 99999999999
Q ss_pred CCCEEEEEe-C---CeEEEEEcCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 740 SGEYLASVS-D---ELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNM 802 (842)
Q Consensus 740 dg~~Lasgs-D---g~I~IwDl~s~~~~~~i~~~~~-------------~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl 802 (842)
++.+|++++ | +.|++||++++ ..+..+.. |...|.+++|+|++.+|++++.|+.|++||+
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 999999998 8 89999999987 67778887 8999999999999999999999999999999
Q ss_pred CCCeEE-EEc------cC---------------CCCeeEEEEeCCC----------CEEEEEeCCCcEEEcC
Q 003177 803 TENKTL-TLS------AH---------------DKLVSSLAASTVN----------GMVASASHDKCVKIWK 842 (842)
Q Consensus 803 ~~~~~~-~~~------~h---------------~~~V~sla~spdg----------~~Lasgs~DG~V~IWd 842 (842)
.+++.+ .+. .| ...|++++|+|++ ++|++++.||.|+|||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 999887 555 67 8999999999998 7999999999999996
No 26
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-38 Score=353.01 Aligned_cols=311 Identities=16% Similarity=0.227 Sum_probs=267.4
Q ss_pred ceEEec----------cCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003177 512 RFVDDG----------SLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 581 (842)
Q Consensus 512 ~~l~~G----------s~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~D 581 (842)
.++++| +.|+.|++|........ ..+.. ..|...|++++|+|++++|++|+.|
T Consensus 26 ~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----------------~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d 88 (416)
T 2pm9_A 26 PLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----------------KPIAS-LQVDSKFNDLDWSHNNKIIAGALDN 88 (416)
T ss_dssp CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----------------SCSCC-CCCSSCEEEEEECSSSSCEEEEESS
T ss_pred CEEEEEecCcccccccCCCCeEEEEEccCCCCC----------------cEEEE-EecCCceEEEEECCCCCeEEEEccC
Confidence 377777 88889999966443110 11112 2588899999999999999999999
Q ss_pred CcEEEEecCC----CeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCC------ce--eeEeecCccce
Q 003177 582 KKAVLWCTES----FTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD------YS--LRTFTGHSTTV 648 (842)
Q Consensus 582 g~I~vwd~~t----~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~t~~------~~--i~~~~~h~~~V 648 (842)
|.|++||+.+ .+.+..+.+|...|++++|+|+ +.+|++++.|+.|++||+.+.. .. ...+..|...|
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 9999999987 4588889999999999999998 8999999999999999998765 22 22346789999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-------cCCeeEEEEeCCC-CEEEEEEcCC---eEEEEECC
Q 003177 649 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRL-GRILAAAIEN---YISILDVE 717 (842)
Q Consensus 649 ~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-------~~~i~~v~~sp~g-~~l~~~s~dg---~I~IwDl~ 717 (842)
.+++|+|++..+|++++.|+.|++||+++++++..+.. ...+.+++|+|++ ..+++++.|+ .|++||++
T Consensus 169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence 99999999777899999999999999999999888876 4679999999997 5888898888 99999999
Q ss_pred CC-eEEEEEe-CCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEE
Q 003177 718 TQ-VCRLKLQ-GHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIG 792 (842)
Q Consensus 718 t~-~~~~~l~-~h~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg-~~L~sgs 792 (842)
++ .++..+. +|...|.+++|+| ++.+|++++ |+.|++||++++ +++..+..|...|.+++|+|++ .+|++++
T Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---EQLSQFPARGNWCFKTKFAPEAPDLFACAS 325 (416)
T ss_dssp STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---CEEEEEECSSSCCCCEEECTTCTTEEEECC
T ss_pred CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---ccceeecCCCCceEEEEECCCCCCEEEEEe
Confidence 86 6677777 8999999999999 899999999 999999999987 7888888999999999999999 8999999
Q ss_pred cCCeEEEEECCCCeEE-EE-----------------------------------ccCCCCeeEEEEeCCCCEEEEEeCCC
Q 003177 793 CYETLELWNMTENKTL-TL-----------------------------------SAHDKLVSSLAASTVNGMVASASHDK 836 (842)
Q Consensus 793 ~dg~I~Iwdl~~~~~~-~~-----------------------------------~~h~~~V~sla~spdg~~Lasgs~DG 836 (842)
.|+.|++||+.+.... .. ..|...|.+++|+|+|++|++++.||
T Consensus 326 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~ 405 (416)
T 2pm9_A 326 FDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGK 405 (416)
T ss_dssp SSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSS
T ss_pred cCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCC
Confidence 9999999999876532 10 01667888999999999999999999
Q ss_pred cEEEcC
Q 003177 837 CVKIWK 842 (842)
Q Consensus 837 ~V~IWd 842 (842)
.|+||+
T Consensus 406 ~v~~w~ 411 (416)
T 2pm9_A 406 GVSITN 411 (416)
T ss_dssp CBCCBC
T ss_pred eEEEEE
Confidence 999997
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.3e-36 Score=322.96 Aligned_cols=274 Identities=19% Similarity=0.300 Sum_probs=242.7
Q ss_pred CCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003177 509 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 588 (842)
Q Consensus 509 ~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd 588 (842)
+...++++|+.|+.|++|..... ..+..+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus 23 p~~~~l~s~~~dg~v~lWd~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 23 PTEPWVLTTLYSGRVELWNYETQ-------------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp SSSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEcCCCcEEEEECCCC-------------------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 34478999999999999965432 24567889999999999999999999999999999999
Q ss_pred cCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCC
Q 003177 589 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 668 (842)
Q Consensus 589 ~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 668 (842)
+.+++.+..+.+|...|++++|+|++.+|++|+.|++|++||++++......+.+|...|.+++|+|.+..+|++|+.|+
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999876667788999999999999997667888999999
Q ss_pred cEEEEECCCCceeeEEee--cCCeeEEEEeC--CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 003177 669 EIRYWSINNGSCAGVFKC--QSGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 744 (842)
Q Consensus 669 ~I~vwDl~t~~~i~~~~~--~~~i~~v~~sp--~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~L 744 (842)
+|++||++++.....+.. ...+..+.|+| ++.++++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|
T Consensus 164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 243 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243 (304)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEE
T ss_pred eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEE
Confidence 999999988776665543 35688899987 67799999999999999999999999999999999999999999999
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCC
Q 003177 745 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTE 804 (842)
Q Consensus 745 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~-L~sgs~dg~I~Iwdl~~ 804 (842)
++++ |+.|+|||+.++ +++..+..+...+.+++|+|++.. +++++.++.+.+|++.+
T Consensus 244 ~s~s~Dg~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 244 ISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp EEEETTSCEEEEETTTC---CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred EEEcCCCeEEEEECCCC---ceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 9999 999999999987 788888888999999999998853 35555566688888765
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=335.74 Aligned_cols=244 Identities=17% Similarity=0.277 Sum_probs=212.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEE----EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 633 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~----~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t 633 (842)
.|...|.+++|++++ .|++|+.||+|+|||+.+++.+. .+.+|.+.|++|+|+|++++|++|+.|++|+|||+.+
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 466789999999986 78899999999999999876543 3458999999999999999999999999999999998
Q ss_pred CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee---cCCeeEEEEeCCC-CEEEEEEcCC
Q 003177 634 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIEN 709 (842)
Q Consensus 634 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~~v~~sp~g-~~l~~~s~dg 709 (842)
+. ++..+.+|...|.+++|++++..+|++|+.|++|++||++++++...+.. ...+.+++|+|++ .++++++.|+
T Consensus 159 ~~-~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 159 QV-VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TE-EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred Cc-EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 65 58889999999999999999988999999999999999999998877653 3458899999954 5678899999
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003177 710 YISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 787 (842)
Q Consensus 710 ~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~ 787 (842)
.|++||+++++++..+.+|...|++++|+|++ .+|++++ |++|+|||+.++ ++ ..+.+|...|++++|+|++..
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~~-~~~~~H~~~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---EL-FRSQAHRDFVRDATWSPLNHS 313 (344)
T ss_dssp EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---EE-EEECCCSSCEEEEEECSSSTT
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---cE-EEEcCCCCCEEEEEEeCCCCe
Confidence 99999999999999999999999999999998 5788888 999999999876 43 456789999999999999875
Q ss_pred -EEEEEcCCeEEEEECCCCeE
Q 003177 788 -LLVIGCYETLELWNMTENKT 807 (842)
Q Consensus 788 -L~sgs~dg~I~Iwdl~~~~~ 807 (842)
|++++.|++|++|++.+...
T Consensus 314 llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEEETTSCEEEEECCC---
T ss_pred EEEEEcCCCeEEEEECCCCCC
Confidence 56788999999999987543
No 29
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.7e-36 Score=332.19 Aligned_cols=282 Identities=15% Similarity=0.191 Sum_probs=247.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003177 556 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 633 (842)
Q Consensus 556 l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t 633 (842)
+..|.++|++++|+|++++|++++.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45699999999999999999999999999999999987 8888999999999999999999999999999999999987
Q ss_pred CCce-eeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce---eeEEe--ecCCeeEEEEeCCCCEEEEEEc
Q 003177 634 PDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK--CQSGATQMRFQPRLGRILAAAI 707 (842)
Q Consensus 634 ~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~---i~~~~--~~~~i~~v~~sp~g~~l~~~s~ 707 (842)
+... ...+..|...|.+++|+|++. +|++++.|+.|++||++.+.. ...+. +...|.+++|+|++..+++++.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 6532 334467899999999999976 677889999999999988763 22222 3567999999999999999999
Q ss_pred CCeEEEEEC------------------CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE
Q 003177 708 ENYISILDV------------------ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 768 (842)
Q Consensus 708 dg~I~IwDl------------------~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~ 768 (842)
|+.|++||+ ..++++..+..|...|.+++|+|++.+|++++ |+.|++||++++ .++..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~ 239 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVAT 239 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceeEE
Confidence 999999995 46788889989999999999999999999999 999999999987 67888
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--CeE---------------------------------------
Q 003177 769 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE--NKT--------------------------------------- 807 (842)
Q Consensus 769 ~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~--~~~--------------------------------------- 807 (842)
+..+...|.+++|+|++.+|+++ .|+.|++|++.+ ++.
T Consensus 240 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 1k8k_C 240 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 318 (372)
T ss_dssp EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence 88899999999999999877766 999999999987 531
Q ss_pred EEE-ccCCCCeeEEEEe-CCC---CEEEEEeCCCcEEEcC
Q 003177 808 LTL-SAHDKLVSSLAAS-TVN---GMVASASHDKCVKIWK 842 (842)
Q Consensus 808 ~~~-~~h~~~V~sla~s-pdg---~~Lasgs~DG~V~IWd 842 (842)
..+ .+|...|++++|+ ++| .+|++|+.||.|+|||
T Consensus 319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 222 3899999999976 666 8999999999999996
No 30
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.8e-36 Score=337.04 Aligned_cols=313 Identities=15% Similarity=0.223 Sum_probs=260.3
Q ss_pred CcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcE
Q 003177 505 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 584 (842)
Q Consensus 505 ~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I 584 (842)
..+.....++++|+.|+.+++|....... ...+..| ..+....|++++++|++|+.||.|
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~-------------------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i 121 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIRDG-------------------SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDI 121 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSEET-------------------TTTSCSC-CEEEEEEECSSSCEEEEEETTSCE
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecccce-------------------eeEEecC-CceEEEEEecCCCEEEEEECCCCE
Confidence 34455567889999999999997543311 1112234 345556789999999999999999
Q ss_pred EEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEE
Q 003177 585 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 664 (842)
Q Consensus 585 ~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasg 664 (842)
+|||+.+++....+.+|...|++++|+|++++|++++.|+.|++||+.++.. +..+.+|...|.+++|+|++. +|+++
T Consensus 122 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s~ 199 (420)
T 3vl1_A 122 KVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRGR-NVLSA 199 (420)
T ss_dssp EEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTTT-EEEEE
T ss_pred EEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCCC-EEEEE
Confidence 9999999999998899999999999999999999999999999999998664 678889999999999999976 66699
Q ss_pred eCCCcEEEEECCCCceeeEEee----c---------------------CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003177 665 DNNSEIRYWSINNGSCAGVFKC----Q---------------------SGATQMRFQPRLGRILAAAIENYISILDVETQ 719 (842)
Q Consensus 665 s~Dg~I~vwDl~t~~~i~~~~~----~---------------------~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~ 719 (842)
+.|+.|++||+++++++..+.. . ..+.+++|+|++.++++++.||.|++||++++
T Consensus 200 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 279 (420)
T 3vl1_A 200 SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK 279 (420)
T ss_dssp ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC
T ss_pred cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999999998888863 2 33444556788999999999999999999999
Q ss_pred eEEEEEe-CCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCC
Q 003177 720 VCRLKLQ-GHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYE 795 (842)
Q Consensus 720 ~~~~~l~-~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~sv~~spdg~~L~sgs~dg 795 (842)
+.+..+. .|...|.+++|+|++. +|++++ |+.|++||++++. ..+..+.. +...+.++.+ +++.+|++++.|+
T Consensus 280 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~ 356 (420)
T 3vl1_A 280 EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--CPVGEFLINEGTPINNVYF-AAGALFVSSGFDT 356 (420)
T ss_dssp CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEEESTTSCEEEEEE-ETTEEEEEETTTE
T ss_pred ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--CchhhhhccCCCCceEEEe-CCCCEEEEecCCc
Confidence 8777765 4888999999999998 999988 9999999999874 23455555 5667777755 5778999999999
Q ss_pred eEEEEECCCC----------eEEEEccCCCCeeEEEEeCCCC---EEEEEeCCCcEEEcC
Q 003177 796 TLELWNMTEN----------KTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 842 (842)
Q Consensus 796 ~I~Iwdl~~~----------~~~~~~~h~~~V~sla~spdg~---~Lasgs~DG~V~IWd 842 (842)
.|++||+... ....+..|...|.+++|+|++. .|++++.+|.+.+|+
T Consensus 357 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 357 SIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred cEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 9999998762 2335678899999999999999 788888899999995
No 31
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.3e-35 Score=358.41 Aligned_cols=285 Identities=21% Similarity=0.356 Sum_probs=244.9
Q ss_pred eEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEecCC-----CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003177 551 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 624 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fSpdg-~~Lasgs~Dg~I~vwd~~t-----~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 624 (842)
.....+++|.+.|+||+|++++ ++|++|+.|++|+|||+.+ +.....+.+|...|.+++|+|++++|++|+.||
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 3456789999999999999864 7999999999999999875 345678899999999999999999999999999
Q ss_pred eEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe----ecCCeeEEEEeCCC-
Q 003177 625 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRL- 699 (842)
Q Consensus 625 ~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~----~~~~i~~v~~sp~g- 699 (842)
+|+|||+.++. .+..+.+|...|.+++|+|++. +|++|+.|++|++||+.......... +...|.+++|+|++
T Consensus 453 ~v~vwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 453 ELRLWDLAAGV-STRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp EEEEEETTTTE-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred cEEEEECCCCc-ceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 99999999765 4778899999999999999977 56699999999999987554333322 34569999999986
Q ss_pred -CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003177 700 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 777 (842)
Q Consensus 700 -~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 777 (842)
..+++++.|+.|++||++++++...+.+|...|++++|+|++++|++++ |+.|+|||++++ .++..+.. ...|.
T Consensus 531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 606 (694)
T 3dm0_A 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSVIH 606 (694)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSCEE
T ss_pred cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEecC-CCcEE
Confidence 5799999999999999999999999999999999999999999999999 999999999987 66666654 56799
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-EccC-------------------CCCeeEEEEeCCCCEEEEEeCCCc
Q 003177 778 SCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAH-------------------DKLVSSLAASTVNGMVASASHDKC 837 (842)
Q Consensus 778 sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~-~~~h-------------------~~~V~sla~spdg~~Lasgs~DG~ 837 (842)
+++|+|++.+|+++ .++.|+|||+.+++.+. +..+ ...|++++|+|+|++|++|+.||+
T Consensus 607 ~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 607 ALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 99999998866654 56679999999988763 2211 123789999999999999999999
Q ss_pred EEEcC
Q 003177 838 VKIWK 842 (842)
Q Consensus 838 V~IWd 842 (842)
|+|||
T Consensus 686 i~iW~ 690 (694)
T 3dm0_A 686 IRVWG 690 (694)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 32
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.9e-35 Score=321.41 Aligned_cols=265 Identities=23% Similarity=0.370 Sum_probs=237.4
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 591 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t 591 (842)
.++++|+.|+.|++|..... ..+..+..|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 68 ~~l~s~s~Dg~v~iWd~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~ 128 (340)
T 1got_B 68 RLLLSASQDGKLIIWDSYTT-------------------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128 (340)
T ss_dssp SEEEEEETTTEEEEEETTTC-------------------CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred CEEEEEeCCCcEEEEECCCC-------------------CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence 68999999999999965432 23566788999999999999999999999999999999986
Q ss_pred C----eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC
Q 003177 592 F----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 667 (842)
Q Consensus 592 ~----~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 667 (842)
. .....+.+|...|.++.|++++ .|++++.|++|++||+.++. .+..+.+|...|.+++|+|++. ++++|+.|
T Consensus 129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d 205 (340)
T 1got_B 129 REGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLAPDTR-LFVSGACD 205 (340)
T ss_dssp CSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred CCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCc-EEEEEcCCCCceEEEEECCCCC-EEEEEeCC
Confidence 5 4567788999999999999876 48999999999999999865 4778889999999999999976 77799999
Q ss_pred CcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeC--CCCCEEEEEEcCCCCEE
Q 003177 668 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYL 744 (842)
Q Consensus 668 g~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~--h~~~V~sl~~spdg~~L 744 (842)
+.|++||+++++++..+.. ...|.+++|+|++..|++++.|+.|++||++++..+..+.. +...|++++|+|++.+|
T Consensus 206 ~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 285 (340)
T 1got_B 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285 (340)
T ss_dssp SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEE
Confidence 9999999999999888864 56799999999999999999999999999999988777653 33479999999999999
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 745 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 801 (842)
Q Consensus 745 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwd 801 (842)
++++ |+.|++||+.++ ..+..+.+|...|.+++|+|++.+|++++.|+.|+|||
T Consensus 286 ~~g~~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 286 LAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCeEEEEEcccC---cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999 999999999887 67888899999999999999999999999999999996
No 33
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-35 Score=312.52 Aligned_cols=280 Identities=15% Similarity=0.235 Sum_probs=249.1
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003177 549 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 628 (842)
Q Consensus 549 ~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 628 (842)
.+.....+.+|.+.|++++| +++++|++|+.||.|++||+.+++....+..|...|.+++|+|++.+|++++.||.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 34567889999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC--ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeC-CCCEEEE
Q 003177 629 WDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQP-RLGRILA 704 (842)
Q Consensus 629 WDl~t~~--~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp-~g~~l~~ 704 (842)
|++.... ..+..+.+|...|.+++|. ..++++++.|+.|++|| .++.+..+. +...+.++.|.| ++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9987643 3467788999999999994 33788999999999999 556666555 467799999988 8999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe
Q 003177 705 AAIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 782 (842)
Q Consensus 705 ~s~dg~I~IwDl~t~~~~~~l~~-h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~s 782 (842)
++.|+.|++|| .......+.. |...|.+++|+|++. +++++ |+.|++||++++ ..+..+..|...|.+++|+
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEC
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhhhcCCceEEEEEEe
Confidence 99999999999 4566777776 899999999999999 66666 999999999987 7888888999999999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 783 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 783 pdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+|+++ +++++.||.|+|||
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 999 5999999999999999999877 6778999999999999998 56799999999996
No 34
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.7e-35 Score=317.36 Aligned_cols=275 Identities=17% Similarity=0.270 Sum_probs=240.7
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~ 590 (842)
..++++|+.|++|++|...... ......+..+.+|...|.+++|+|++++|++|+.|++|+|||+.
T Consensus 30 ~~~l~s~s~D~~v~~W~~~~~~--------------~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~ 95 (319)
T 3frx_A 30 PNLLLSASRDKTLISWKLTGDD--------------QKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95 (319)
T ss_dssp TTEEEEEETTSEEEEEEEEEET--------------TEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccEEEEecCCccEEEecCCCCC--------------ccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 3789999999999999653221 11123567889999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCC-----CcEEEEEe
Q 003177 591 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-----EDLLCSCD 665 (842)
Q Consensus 591 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg-----~~llasgs 665 (842)
+++.+..+.+|...|.+++|+|++.+|++++.|++|++||++. ..+..+.+|...|.++.|+|.. ..++++++
T Consensus 96 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~ 173 (319)
T 3frx_A 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173 (319)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEEEEEE
T ss_pred CCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe
Confidence 9999999999999999999999999999999999999999974 3577888999999999999863 33788999
Q ss_pred CCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 003177 666 NNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 744 (842)
Q Consensus 666 ~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~L 744 (842)
.|+.|++||+++.+....+. +...|.+++|+|++.+|++++.|+.|++||+++++++..+.. ...|.+++|+|++.+|
T Consensus 174 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l 252 (319)
T 3frx_A 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWL 252 (319)
T ss_dssp TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEE
T ss_pred CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEE
Confidence 99999999999988877765 456799999999999999999999999999999999988885 4689999999999999
Q ss_pred EEEeCCeEEEEEcCCCCCceeEEEee--------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003177 745 ASVSDELVRVWSIGSGSKGECIHELS--------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 805 (842)
Q Consensus 745 asgsDg~I~IwDl~s~~~~~~i~~~~--------~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~ 805 (842)
+++.++.+++|++... ..+..+. .+...+.+++|+|+|++|++++.|+.|+|||+.++
T Consensus 253 a~~~~~~i~v~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 253 AAATATGIKVFSLDPQ---YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEETTEEEEEEETTE---EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEcCCCcEEEEeCcC---eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 9999888999999875 4444433 24567899999999999999999999999998654
No 35
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.2e-35 Score=328.44 Aligned_cols=285 Identities=16% Similarity=0.227 Sum_probs=237.7
Q ss_pred eeEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEecCCCeEEEEec--cCCCCeEEEEEcC-CCCEEEEEeCCCe
Q 003177 550 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSP-SLSRLATSSADRT 625 (842)
Q Consensus 550 ~~~i~~l~gH~~~V~sv~fSpdg-~~Lasgs~Dg~I~vwd~~t~~~~~~l~--~h~~~I~~l~fsp-dg~~Latgs~Dg~ 625 (842)
+..+..+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 45577889999999999999999 999999999999999999887776665 6999999999999 7899999999999
Q ss_pred EEEEEcCCCCceeeEeecC---ccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCC-
Q 003177 626 VRVWDTENPDYSLRTFTGH---STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG- 700 (842)
Q Consensus 626 I~IWDl~t~~~~i~~~~~h---~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~- 700 (842)
|++||+.+. .+..+..| ...|.+++|+|++. +|++++.|+.|++||++ ++.+..+. +...|.+++|+|++.
T Consensus 143 i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 143 TTLRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEEETTSC--EEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTT
T ss_pred EEEEECCCC--ceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCC
Confidence 999999852 34555444 48899999999977 67799999999999995 66666665 567799999999998
Q ss_pred EEEEEEcCCeEEEEECCC----CeEEEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEee----
Q 003177 701 RILAAAIENYISILDVET----QVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELS---- 770 (842)
Q Consensus 701 ~l~~~s~dg~I~IwDl~t----~~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~---- 770 (842)
.+++++.|+.|++||+++ +.++..+ +|...|.+++|+| ++.+|++++ |+.|++||++++.....+....
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 899999999999999997 6677666 5999999999999 999999999 9999999999875433332111
Q ss_pred cCC----------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEcc--CCCCeeEEEEeCCCCEEEEEeCCCc
Q 003177 771 CTG----------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA--HDKLVSSLAASTVNGMVASASHDKC 837 (842)
Q Consensus 771 ~~~----------~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~--h~~~V~sla~spdg~~Lasgs~DG~ 837 (842)
.+. ..+..++|+|++.+ +++.|+.|+|||+.+++.+ .+.. |...+.+++|+|++++|++|+ ||.
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 111 33444666666665 6678999999999999887 5554 567888889999999999997 999
Q ss_pred EEEcC
Q 003177 838 VKIWK 842 (842)
Q Consensus 838 V~IWd 842 (842)
|+|||
T Consensus 375 i~iw~ 379 (383)
T 3ei3_B 375 ILIWN 379 (383)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 36
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.7e-36 Score=328.63 Aligned_cols=286 Identities=15% Similarity=0.274 Sum_probs=246.2
Q ss_pred EEecCCCCCeEEEEEcCC----CCEEEEEECCCcEEEEecCCCeEEEEecc-----CCCCeEEEEEcCC----CCEEEEE
Q 003177 554 QLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPS----LSRLATS 620 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpd----g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~-----h~~~I~~l~fspd----g~~Latg 620 (842)
....+|.+.|++++|+|+ ..++++++.++.|+|||+.+++.+..+.. |...|++++|+|+ +.+|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 344589999999999984 45666777778999999998777666643 5678999999998 6799999
Q ss_pred eCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEE----eecCCeeEEEEe
Q 003177 621 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQ 696 (842)
Q Consensus 621 s~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~----~~~~~i~~v~~s 696 (842)
+.||.|++||+.++. .+..+.+|...|.+++|+|++..+|++++.||.|++||+++++.+..+ .+...|.+++|+
T Consensus 92 ~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 92 GSRGIIRIINPITMQ-CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp ETTCEEEEECTTTCC-EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred cCCCEEEEEEchhce-EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 999999999999865 477888999999999999944558889999999999999999998887 356789999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEEEE----------------------------EeCCCCCEEEEEEcCCCCEEEEEe
Q 003177 697 PRLGRILAAAIENYISILDVETQVCRLK----------------------------LQGHKNQVHSVCWNTSGEYLASVS 748 (842)
Q Consensus 697 p~g~~l~~~s~dg~I~IwDl~t~~~~~~----------------------------l~~h~~~V~sl~~spdg~~Lasgs 748 (842)
|++..+++++.|+.|++||+++++.... ...|...|.+++|+ +.+|++++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 9999999999999999999997654332 23489999999998 77899988
Q ss_pred -CCeEEEEEcCCCCC-----------ceeEEEeecCCCceEEEEEeCC--CCEEEEEEcCCeEEEEECCCCeE-----EE
Q 003177 749 -DELVRVWSIGSGSK-----------GECIHELSCTGNKFHSCVFHPT--FPSLLVIGCYETLELWNMTENKT-----LT 809 (842)
Q Consensus 749 -Dg~I~IwDl~s~~~-----------~~~i~~~~~~~~~I~sv~~spd--g~~L~sgs~dg~I~Iwdl~~~~~-----~~ 809 (842)
|+.|++||+.+... ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.+++. ..
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 99999999987632 1347778888999999999999 99999999999999999998742 25
Q ss_pred EccC--CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 810 LSAH--DKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 810 ~~~h--~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+..| ...|++++|+|++++|++++.||.|+|||
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 6666 79999999999999999999999999997
No 37
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=323.04 Aligned_cols=287 Identities=15% Similarity=0.200 Sum_probs=242.2
Q ss_pred EEecCCCCCeEEEEEcCCCCEE-EEEEC---CCcEEEEecCCCeEEEEe-ccCCCCeEEEEEcCC---CCEEEEEeCCCe
Q 003177 554 QLIPASTSKVESCHFSPDGKLL-ATGGH---DKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS---LSRLATSSADRT 625 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~L-asgs~---Dg~I~vwd~~t~~~~~~l-~~h~~~I~~l~fspd---g~~Latgs~Dg~ 625 (842)
..+.+|.+.|++++|+|++..| ++|+. |+.|+|||+.+++..... .+|...|.+++|+|+ +.+|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 4567899999999999999655 56655 899999999988776443 379999999999998 699999999999
Q ss_pred EEEEEcCCCCceeeEeecCccceEEEEE------cCCCCcEEEEEeCCCcEEEEECCCCc-eeeEEee-----cCCeeEE
Q 003177 626 VRVWDTENPDYSLRTFTGHSTTVMSLDF------HPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC-----QSGATQM 693 (842)
Q Consensus 626 I~IWDl~t~~~~i~~~~~h~~~V~sl~f------spdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~~-----~~~i~~v 693 (842)
|++||+.++...+..+.+|...|.+++| +|++. +|++++.||.|++||+++++ .+..+.. ...+.++
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 9999999877568888999999999965 56665 67799999999999999887 5666653 2268888
Q ss_pred E----EeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcC---CCCEEEEEe-CCeEEEEEcCCCCCcee
Q 003177 694 R----FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT---SGEYLASVS-DELVRVWSIGSGSKGEC 765 (842)
Q Consensus 694 ~----~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~sp---dg~~Lasgs-Dg~I~IwDl~s~~~~~~ 765 (842)
+ |++++..+++++.|+.|++||+++++.... ..|...|.+++|+| ++.+|++++ |+.|++||++++.....
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 8 678999999999999999999999987555 45889999999999 999999999 99999999987643222
Q ss_pred EE--EeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCe--------------------EEEEccCCCCeeEEEE
Q 003177 766 IH--ELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENK--------------------TLTLSAHDKLVSSLAA 822 (842)
Q Consensus 766 i~--~~~~~~~~I~sv~~spdg~-~L~sgs~dg~I~Iwdl~~~~--------------------~~~~~~h~~~V~sla~ 822 (842)
+. .+..|...|.+++|+|++. +|++++.|+.|++||+..+. ...+..|...|++++|
T Consensus 250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (357)
T 3i2n_A 250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW 329 (357)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence 22 4458899999999999998 89999999999999987532 2367789999999999
Q ss_pred eCCCCEEE-EEeCCCcEEEcC
Q 003177 823 STVNGMVA-SASHDKCVKIWK 842 (842)
Q Consensus 823 spdg~~La-sgs~DG~V~IWd 842 (842)
+|++++|+ +++.||.|+|||
T Consensus 330 s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 330 SPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp CSSSTTEEEEEETTSEEEEEE
T ss_pred cCCCCeEEEEecCCCcEEEEE
Confidence 99999888 899999999996
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-35 Score=327.34 Aligned_cols=278 Identities=17% Similarity=0.253 Sum_probs=246.0
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEec----CCCe------EEEEecc----------CCCCeEEEEEcCCCC
Q 003177 557 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT----ESFT------VKSTLEE----------HTQWITDVRFSPSLS 615 (842)
Q Consensus 557 ~gH~~~V~sv~fSpdg~-~Lasgs~Dg~I~vwd~----~t~~------~~~~l~~----------h~~~I~~l~fspdg~ 615 (842)
..|.+.|++++|+|+++ +||+|+.||.|++||+ .+++ ....+.. |...|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45679999999999999 9999999999999999 8887 4555544 688999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCC------
Q 003177 616 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG------ 689 (842)
Q Consensus 616 ~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~------ 689 (842)
+|++++.||.|++||.. ...+..+..|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+.....
T Consensus 122 ~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 122 SIVTGVENGELRLWNKT--GALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp EEEEEETTSCEEEEETT--SCEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred EEEEEeCCCeEEEEeCC--CCeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 99999999999999943 345778889999999999999977 566888999999999999998887775433
Q ss_pred ----------eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003177 690 ----------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 758 (842)
Q Consensus 690 ----------i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~ 758 (842)
+.+++|+++ +.+++++.++.|++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp -------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred eccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 889999987 6689999999999999999998889999999999999999999999999 9999999998
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCc
Q 003177 759 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKC 837 (842)
Q Consensus 759 s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~ 837 (842)
++ ..+..+..|...|.+++|+|++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++++|++++.||.
T Consensus 278 ~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 353 (425)
T 1r5m_A 278 NG---NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353 (425)
T ss_dssp SB---SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred CC---ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence 87 5667777889999999999999 9999999999999999999877 66788999999999999999999999999
Q ss_pred EEEcC
Q 003177 838 VKIWK 842 (842)
Q Consensus 838 V~IWd 842 (842)
|+|||
T Consensus 354 i~i~~ 358 (425)
T 1r5m_A 354 VNVYD 358 (425)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 39
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.5e-35 Score=326.19 Aligned_cols=284 Identities=14% Similarity=0.247 Sum_probs=227.9
Q ss_pred CeeEEEEecCCCCcccccCCcccCCCceEEeccC------CCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCC
Q 003177 486 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSL------DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 559 (842)
Q Consensus 486 ~~s~~~~~~~~~~~~~~~~~~l~~~~~~l~~Gs~------d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH 559 (842)
....+.|++|+ .++++|+. |+.+++|........ ........+|
T Consensus 44 ~V~~v~fSpDG---------------~~las~s~d~~~~wd~~v~~~~~~~~~~~---------------~~~~~~~~~~ 93 (357)
T 4g56_B 44 QIGAVRYRRDG---------------ALLLAASSLSSRTWGGSIWVFKDPEGAPN---------------ESLCTAGVQT 93 (357)
T ss_dssp EEEEEEECSSS---------------CEEEEEECSSSSSCCEEEEEESSCC---C---------------GGGCSEEEEC
T ss_pred CEEEEEECCCC---------------CEEEEEcCCCCccccCeEEEEECCCCCcc---------------eeEecccCCC
Confidence 46677788766 67777776 445555543322111 0112234578
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEE----EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 635 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~ 635 (842)
...|++++|+|++. +++++.||+|+|||+.+++.. ....+|...|++|+|+|++++|++++.|++|+|||+.++.
T Consensus 94 ~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~ 172 (357)
T 4g56_B 94 EAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA 172 (357)
T ss_dssp SSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 89999999999985 456788999999999887654 3345899999999999999999999999999999999865
Q ss_pred ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee---cCCeeEEEEeCCC-CEEEEEEcCCeE
Q 003177 636 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIENYI 711 (842)
Q Consensus 636 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~~v~~sp~g-~~l~~~s~dg~I 711 (842)
.+..+.+|...|.+++|++++..++++++.|+.|++||+++++++..+.. ...+.+++|+|++ .+|++++.|+.|
T Consensus 173 -~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i 251 (357)
T 4g56_B 173 -VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNV 251 (357)
T ss_dssp -EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred -EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccce
Confidence 57888999999999999999888888999999999999999887766543 4568999999975 567888999999
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-CCCEE
Q 003177 712 SILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSL 788 (842)
Q Consensus 712 ~IwDl~t~~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~sp-dg~~L 788 (842)
++||+++++++..+.+|...|++++|+|++ .+|++++ |++|+|||+.++ +++.. ..|...|++++|+| ++.+|
T Consensus 252 ~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---~~~~~-~~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 252 SLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---EVFRD-LSHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp EEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---EEEEE-CCCSSCEEEEEECSSSTTEE
T ss_pred eEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---cEeEE-CCCCCCEEEEEEeCCCCCEE
Confidence 999999999999999999999999999987 5788888 999999999887 55554 47899999999998 78999
Q ss_pred EEEEcCCeEEEEECCCC
Q 003177 789 LVIGCYETLELWNMTEN 805 (842)
Q Consensus 789 ~sgs~dg~I~Iwdl~~~ 805 (842)
++++.|++|++|++...
T Consensus 328 ~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEETTSCEEEEECC--
T ss_pred EEEcCCCeEEEEECCCC
Confidence 99999999999999654
No 40
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3e-34 Score=316.01 Aligned_cols=279 Identities=15% Similarity=0.231 Sum_probs=231.5
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEec
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~ 589 (842)
...++++|+.|++|++|........ +........+.+|...|.+++|+|++.+|++|+.|++|+|||+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~------------~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~ 105 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQN------------GYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDL 105 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCS------------SBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEET
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcc------------cccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 4578999999999999976543211 1112346678999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEe---ecCccceEEEEEcCCCC--------
Q 003177 590 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKE-------- 658 (842)
Q Consensus 590 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~---~~h~~~V~sl~fspdg~-------- 658 (842)
.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+... . .... .+|...|.+++|+|++.
T Consensus 106 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 183 (343)
T 2xzm_R 106 RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-C-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPF 183 (343)
T ss_dssp TSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-E-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSS
T ss_pred CCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-c-eeeeecccCCCceeeeeeeccccccccccCCC
Confidence 999999999999999999999999999999999999999999742 2 2222 26889999999999863
Q ss_pred -cEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC-CeEEEEEeCCCCCEEEE
Q 003177 659 -DLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSV 735 (842)
Q Consensus 659 -~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t-~~~~~~l~~h~~~V~sl 735 (842)
.+|++++.|+.|++||.. ......+. +...|.+++|+|++.+|++++.|+.|++||+.. ......+. +...|.++
T Consensus 184 ~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v 261 (343)
T 2xzm_R 184 APYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQI 261 (343)
T ss_dssp CCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEE
T ss_pred CCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEE
Confidence 478899999999999954 55555554 467799999999999999999999999999954 33444443 55679999
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee-----------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 736 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-----------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 736 ~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~-----------~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
+|+|++.+++++.|+.|++||+.+..... +..+. +|...+.+++|+|++.+|++++.|+.|++|++.+
T Consensus 262 ~~sp~~~~la~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 262 AFNPKLQWVAVGTDQGVKIFNLMTQSKAP-VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp EECSSSCEEEEEESSCEEEEESSSCCSCS-EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCCCc-eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 99999999988889999999998764322 22222 5677899999999999999999999999999865
Q ss_pred C
Q 003177 805 N 805 (842)
Q Consensus 805 ~ 805 (842)
+
T Consensus 341 g 341 (343)
T 2xzm_R 341 S 341 (343)
T ss_dssp E
T ss_pred c
Confidence 4
No 41
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.8e-34 Score=315.85 Aligned_cols=267 Identities=22% Similarity=0.353 Sum_probs=236.9
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 591 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t 591 (842)
.++++|+.|+.|++|..... .....+..|...|.+++|+|+|.+|++|+.|+.|++|++..
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~-------------------~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~ 137 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTT-------------------NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF 137 (354)
T ss_dssp SEEEEEETTSEEEEEETTTC-------------------CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred CEEEEEeCCCeEEEEECCCC-------------------CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence 68999999999999965332 22455678899999999999999999999999999999864
Q ss_pred C------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCC-CcEEEEE
Q 003177 592 F------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSC 664 (842)
Q Consensus 592 ~------~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg-~~llasg 664 (842)
. .....+..|...|.+++|+|++..|++++.|++|++||++++. .+..+.+|...|.+++|+|+. ..+|++|
T Consensus 138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~g~~l~sg 216 (354)
T 2pbi_B 138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-LLQSFHGHGADVLCLDLAPSETGNTFVSG 216 (354)
T ss_dssp CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECCCSSCCEEEEE
T ss_pred cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEcCCCCCeEEEEEEeCCCCCEEEEE
Confidence 3 2345677899999999999999999999999999999999865 478889999999999999863 3588899
Q ss_pred eCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC--CCCEEEEEEcCCC
Q 003177 665 DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSG 741 (842)
Q Consensus 665 s~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h--~~~V~sl~~spdg 741 (842)
+.||.|++||+++++++..+.. ...|.+++|+|++..|++++.|+.|++||++....+..+..+ ...+.+++|+|++
T Consensus 217 s~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g 296 (354)
T 2pbi_B 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG 296 (354)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred eCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC
Confidence 9999999999999999888864 567999999999999999999999999999999887777643 3478999999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 742 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 801 (842)
Q Consensus 742 ~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwd 801 (842)
.+|++++ |+.|+|||+.++ ..+..+.+|...|.+++|+|++.+|++++.|++|+||+
T Consensus 297 ~~l~~g~~d~~i~vwd~~~~---~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 297 RLLFAGYNDYTINVWDVLKG---SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SEEEEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CEEEEEECCCcEEEEECCCC---ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999 999999999887 67788889999999999999999999999999999996
No 42
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-36 Score=334.88 Aligned_cols=285 Identities=15% Similarity=0.193 Sum_probs=231.0
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCC--eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003177 555 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 632 (842)
Q Consensus 555 ~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 632 (842)
.+..|.+.|++++|+|++++||+|+.|+.|+|||+.++ +.+..+.+|...|++++|+|++++|++++.|++|+|||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34557789999999999999999999999999999988 7788899999999999999999999999999999999998
Q ss_pred CCC--ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc---eeeEEe--ecCCeeEEEEeCCCCEEEEE
Q 003177 633 NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFK--CQSGATQMRFQPRLGRILAA 705 (842)
Q Consensus 633 t~~--~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~---~i~~~~--~~~~i~~v~~sp~g~~l~~~ 705 (842)
++. .....+.+|...|.+++|+|++. +|++++.|+.|++||+++++ +...+. +...|.+++|+|++.+|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 765 23567778999999999999977 56688999999999999887 355555 56789999999999999999
Q ss_pred EcCCeEEEEECC------------------CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-ee
Q 003177 706 AIENYISILDVE------------------TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-EC 765 (842)
Q Consensus 706 s~dg~I~IwDl~------------------t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~-~~ 765 (842)
+.|+.|++||++ .++++..+ +|...|.+++|+|++++|++++ |+.|++||+.++... ..
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 999999999985 35566667 8999999999999999999999 999999999987431 12
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe---------------------------------------
Q 003177 766 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------------------------------------- 806 (842)
Q Consensus 766 i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~--------------------------------------- 806 (842)
+..+..|...|.+++|+|++.+|++++.++.+ +|+.....
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS 322 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence 67788899999999999999988777655554 77664211
Q ss_pred EE--------------EEccCCCCeeEEEEeCCC-C---EEEEEeCCCcEEEcC
Q 003177 807 TL--------------TLSAHDKLVSSLAASTVN-G---MVASASHDKCVKIWK 842 (842)
Q Consensus 807 ~~--------------~~~~h~~~V~sla~spdg-~---~Lasgs~DG~V~IWd 842 (842)
.. ....|.+.|+++++.+.. . .|+||+.||.|+|||
T Consensus 323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 00 001299999999976543 3 699999999999997
No 43
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=312.15 Aligned_cols=281 Identities=21% Similarity=0.348 Sum_probs=231.3
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~ 590 (842)
..++++|+.|+.|++|..... ..........+|.+.|.+++|+|++++||+|+.|+.|+|||+.
T Consensus 28 g~~las~~~D~~i~iw~~~~~----------------~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~ 91 (345)
T 3fm0_A 28 GTLLASCGGDRRIRIWGTEGD----------------SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN 91 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETT----------------EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEcCCC----------------cceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc
Confidence 378999999999999964322 1111223447899999999999999999999999999999988
Q ss_pred CC--eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeeEeecCccceEEEEEcCCCCcEEEEEeC
Q 003177 591 SF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 666 (842)
Q Consensus 591 t~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~--~i~~~~~h~~~V~sl~fspdg~~llasgs~ 666 (842)
.+ +++..+.+|...|.+++|+|++++|++++.|++|++||+.+... .+..+.+|...|.+++|+|++. +|++++.
T Consensus 92 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~ 170 (345)
T 3fm0_A 92 QDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASY 170 (345)
T ss_dssp CC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEET
T ss_pred CCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeC
Confidence 76 45788899999999999999999999999999999999987542 3567788999999999999977 6679999
Q ss_pred CCcEEEEECCCCcee--eEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC---------------CeEEEEEeC-
Q 003177 667 NSEIRYWSINNGSCA--GVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET---------------QVCRLKLQG- 727 (842)
Q Consensus 667 Dg~I~vwDl~t~~~i--~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t---------------~~~~~~l~~- 727 (842)
|+.|++||+++++.. ..+. +...|.+++|+|++.+|++++.|+.|++||... ..++..+.+
T Consensus 171 d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (345)
T 3fm0_A 171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF 250 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS
T ss_pred CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC
Confidence 999999999887533 3443 456799999999999999999999999999632 234555655
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc------eeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEE
Q 003177 728 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLEL 799 (842)
Q Consensus 728 h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~------~~i~~~~~~~~~I~sv~~spdg~-~L~sgs~dg~I~I 799 (842)
|...|.+++|++++.+|++++ |+.|++|++...... ...+....|...|.+++|+|++. +|++++.|+.|++
T Consensus 251 h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~ 330 (345)
T 3fm0_A 251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF 330 (345)
T ss_dssp CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEE
Confidence 888999999999999999998 999999998764321 11233457889999999999984 8999999999999
Q ss_pred EECCCCeEE
Q 003177 800 WNMTENKTL 808 (842)
Q Consensus 800 wdl~~~~~~ 808 (842)
|++.+++..
T Consensus 331 W~~~~~~~~ 339 (345)
T 3fm0_A 331 WKYQRPEGL 339 (345)
T ss_dssp EEECC----
T ss_pred EEecCCCCc
Confidence 999887754
No 44
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-35 Score=331.93 Aligned_cols=285 Identities=14% Similarity=0.240 Sum_probs=237.1
Q ss_pred eEEEEe-cCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEecCC---Ce---EEEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 003177 551 TEFQLI-PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES---FT---VKSTLEEHTQWITDVRFSPSLSRLATSSA 622 (842)
Q Consensus 551 ~~i~~l-~gH~~~V~sv~fSp-dg~~Lasgs~Dg~I~vwd~~t---~~---~~~~l~~h~~~I~~l~fspdg~~Latgs~ 622 (842)
..+..+ .+|.+.|++++|+| ++++||+|+.||.|+|||+.+ +. ....+ .|...|++++|+|++.+|++++.
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeC
Confidence 345667 89999999999999 999999999999999999876 33 23333 59999999999999999999999
Q ss_pred CCeEEEEEcC---CCCceeeEeec------------CccceEEEE--EcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe
Q 003177 623 DRTVRVWDTE---NPDYSLRTFTG------------HSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 685 (842)
Q Consensus 623 Dg~I~IWDl~---t~~~~i~~~~~------------h~~~V~sl~--fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~ 685 (842)
||+|++||++ ++. ....+.. +...+.++. +++++. +|++++.|+.|++||+++++++..+.
T Consensus 132 dg~i~vwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 132 DGQIIVLKVNHYQQES-EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp TSEEEEEEEEEEEETT-EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEEeccccCCc-eeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 9999999995 332 2332222 445566666 445644 77799999999999999999998887
Q ss_pred e---cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEe-CCCCCEEEEEEcC----CCCEEEEEe-CCeEEEEE
Q 003177 686 C---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT----SGEYLASVS-DELVRVWS 756 (842)
Q Consensus 686 ~---~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~-~h~~~V~sl~~sp----dg~~Lasgs-Dg~I~IwD 756 (842)
. ...|.+++|+|++.++++++.||.|++||+++++++..+. .|...|.+++|+| ++.+|++++ |+.|+|||
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 289 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence 4 5789999999999999999999999999999999999886 7888999996664 677999998 99999999
Q ss_pred cCCCCCceeEEEeec--------------------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-E
Q 003177 757 IGSGSKGECIHELSC--------------------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T 809 (842)
Q Consensus 757 l~s~~~~~~i~~~~~--------------------------~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~ 809 (842)
++++ .++..+.. |...|.+++|+ ++.+|++++.|+.|++||+.+++.. .
T Consensus 290 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 290 FVKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp TTTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred cCCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 9987 55555543 44568889999 7789999999999999999887644 2
Q ss_pred Ecc-------------------------------------CCCCeeEEEEeCC--CCEEEEEeCCCcEEEcC
Q 003177 810 LSA-------------------------------------HDKLVSSLAASTV--NGMVASASHDKCVKIWK 842 (842)
Q Consensus 810 ~~~-------------------------------------h~~~V~sla~spd--g~~Lasgs~DG~V~IWd 842 (842)
+.+ |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 366 VISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 222 8999999999998 77999999999999996
No 45
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.8e-33 Score=302.76 Aligned_cols=270 Identities=24% Similarity=0.410 Sum_probs=239.3
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEec
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~ 589 (842)
...++++|+.|+.+++|...+. .....+.+|...|.+++|+|++++|++|+.|+.|++||+
T Consensus 34 ~~~~l~s~~~dg~i~iw~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 34 NGEWLASSSADKLIKIWGAYDG-------------------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp TSSEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEeeCCCeEEEEeCCCc-------------------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 3478999999999999965432 134567899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCc
Q 003177 590 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 669 (842)
Q Consensus 590 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 669 (842)
.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+.++. .+..+..|...|.+++|+|++. +|++++.||.
T Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~ 172 (312)
T 4ery_A 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGL 172 (312)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEEecCCCCcEEEEEEcCCCC-EEEEEeCCCc
Confidence 9999999999999999999999999999999999999999999865 4778889999999999999977 6679999999
Q ss_pred EEEEECCCCceeeEEee--cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEE---EEEcCCCCEE
Q 003177 670 IRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS---VCWNTSGEYL 744 (842)
Q Consensus 670 I~vwDl~t~~~i~~~~~--~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~s---l~~spdg~~L 744 (842)
|++||+++++++..+.. ...+..++|+|++.++++++.|+.|++||+++++++..+.+|...+.+ ....+++.+|
T Consensus 173 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
T 4ery_A 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252 (312)
T ss_dssp EEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEE
T ss_pred EEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEE
Confidence 99999999988877643 456899999999999999999999999999999999999888765432 2334678899
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE--cCCeEEEEECC
Q 003177 745 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 803 (842)
Q Consensus 745 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs--~dg~I~Iwdl~ 803 (842)
++++ |+.|++||+.++ ..+..+..|...|.+++|+|++..|++++ .|+.|++|+.+
T Consensus 253 ~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 253 VSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EECCTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEECCCCEEEEEECCCc---hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9998 999999999887 78888999999999999999999999987 58999999864
No 46
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=345.85 Aligned_cols=312 Identities=8% Similarity=0.041 Sum_probs=234.8
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC------CCEEEEEECCCc
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD------GKLLATGGHDKK 583 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpd------g~~Lasgs~Dg~ 583 (842)
...++++++.|++|++|....... ......++.+|.+.|.+|+|+|+ +.+||+++.||+
T Consensus 172 ~~~~laS~s~D~tI~iWd~~~~~~---------------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgt 236 (524)
T 2j04_B 172 HLEMFDKEKHSSCIQIFKMNTSTL---------------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGT 236 (524)
T ss_dssp ----------CEEEEEEEEETTTC---------------CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSC
T ss_pred hhhhhccCCCCceEEEEEccCCCC---------------CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCe
Confidence 335678899999999996533210 11123456788999999999996 579999999999
Q ss_pred EEEEecCCCeE-----------EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEE-
Q 003177 584 AVLWCTESFTV-----------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL- 651 (842)
Q Consensus 584 I~vwd~~t~~~-----------~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl- 651 (842)
|+|||+.++.. ...+.+|...|++++|+++ ..|++|+.||+|++||+.++..+...+.+|...|.+|
T Consensus 237 vrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 237 INFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 99999986532 2467889999999999986 4899999999999999997766566788999999999
Q ss_pred -EEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecC---CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 003177 652 -DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 727 (842)
Q Consensus 652 -~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~---~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~ 727 (842)
+|++++..+|++|+.|++|+|||+++++++..+..+. .+.+++|+|++..+++++.|+.|++||++++.++..+.+
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g 395 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS 395 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec
Confidence 5677764689999999999999999988776665432 478999999999999999999999999999988888889
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 728 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWN 801 (842)
Q Consensus 728 h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-----~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwd 801 (842)
|.+.|++|+|+|++.+|++|+ |++|+|||+.... +..+. .+...+.+++|+|++..+. ...+-.+..|+
T Consensus 396 H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~----~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~ 470 (524)
T 2j04_B 396 RETTITAIGVSRLHPMVLAGSADGSLIITNAARRL----LHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLT 470 (524)
T ss_dssp CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST----TTCC------CCCCEEEECBCCSSSCEEE-ECCCCCCCC--
T ss_pred CCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh----ccccccCccceeeeEEEEeccCCCCCeEE-ccCCceecccc
Confidence 999999999999999999999 9999999986531 11111 1122577899999998442 22222233333
Q ss_pred CCCCeEEEEccCCCCeeEEEEeCCCC---EEEEEeCCCcEEEcC
Q 003177 802 MTENKTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 842 (842)
Q Consensus 802 l~~~~~~~~~~h~~~V~sla~spdg~---~Lasgs~DG~V~IWd 842 (842)
........+.+|...|.+|+|+|++. +||+|+.||.|+||+
T Consensus 471 ~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 471 VNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp -----------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred cCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 33444558889999999999999964 999999999999995
No 47
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.7e-33 Score=317.80 Aligned_cols=300 Identities=17% Similarity=0.262 Sum_probs=259.1
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~ 590 (842)
+.++++|+.|+.|++|..... ..+..+.+|.+.|++++|++++ +|++|+.||+|++||+.
T Consensus 132 ~~~l~sgs~dg~i~vwd~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 132 DNYVITGADDKMIRVYDSINK-------------------KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred CCEEEEEcCCCcEEEEECCCC-------------------cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 368999999999999965432 3466788999999999999988 99999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEc--CCCCEEEEEeCCCeEEEEEcCCCCce----------------------eeEeecCcc
Q 003177 591 SFTVKSTLEEHTQWITDVRFS--PSLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHST 646 (842)
Q Consensus 591 t~~~~~~l~~h~~~I~~l~fs--pdg~~Latgs~Dg~I~IWDl~t~~~~----------------------i~~~~~h~~ 646 (842)
+++.+..+.+|...|.+++|+ +++.+|++++.||+|++||+.+.... +..+.+|..
T Consensus 192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (464)
T 3v7d_B 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence 999999999999999999998 57899999999999999999875432 456778999
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003177 647 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 725 (842)
Q Consensus 647 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l 725 (842)
.|.++..+ +. ++++++.|+.|++||+++++++..+. +...|.+++|+|++..+++++.|+.|++||+++++++..+
T Consensus 272 ~v~~~~~~--~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 272 SVRTVSGH--GN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp CEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred eEEEEcCC--CC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 99888544 44 77799999999999999999988887 4567999999999999999999999999999999999999
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 726 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 726 ~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
.+|...|.+++|+ +.+|++++ |+.|++||+.+. ...... .+...+..++|++++.+|++++ |+.|++||+.+
T Consensus 349 ~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~---~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 349 QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDY---SRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC---CEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCC---ceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence 9999999999997 57888888 999999999986 333333 3567788899999999888888 89999999999
Q ss_pred CeEEE--EccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 805 NKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 805 ~~~~~--~~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
++.+. ...|...|.+++|+ +..++++++.||.+.+|
T Consensus 422 g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 422 GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 99884 56889999999997 44566666778776654
No 48
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.8e-34 Score=365.76 Aligned_cols=312 Identities=21% Similarity=0.374 Sum_probs=271.8
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEec
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~ 589 (842)
...++++|+.|+.|++|..... ..+..+.+|.+.|++++|+|++++||+|+.||.|+|||+
T Consensus 626 ~~~~l~s~~~d~~i~vw~~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 626 DGQRIASCGADKTLQVFKAETG-------------------EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp TSSEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEEeCCCeEEEEECCCC-------------------CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 3478999999999999966443 245678899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC
Q 003177 590 ESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 667 (842)
Q Consensus 590 ~t~~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 667 (842)
.+++.+..+.+|...|.+++|+| ++.++++++.|+.|++||+.++. .+..+.+|...|.+++|+|++. ++++++.|
T Consensus 687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~d 764 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDE-LLASCSAD 764 (1249)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EEEEECCCSSCEEEEEECSSTT-EEEEEESS
T ss_pred CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hhheecCCCCCEEEEEEecCCC-EEEEEECC
Confidence 99999999999999999999999 56689999999999999999865 4778889999999999999977 67799999
Q ss_pred CcEEEEECCCCceeeEEe--------------------------------------------------------ecCCee
Q 003177 668 SEIRYWSINNGSCAGVFK--------------------------------------------------------CQSGAT 691 (842)
Q Consensus 668 g~I~vwDl~t~~~i~~~~--------------------------------------------------------~~~~i~ 691 (842)
|.|++||+.+++....+. +...+.
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence 999999998776544332 234578
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-------
Q 003177 692 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG------- 763 (842)
Q Consensus 692 ~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~------- 763 (842)
+++|+|++..+++++.++.|++||+.++..+..+.+|...|.+++|+|++.+|++++ |+.|++||+.+....
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~ 924 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQ 924 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccc
Confidence 899999999999999999999999999999999999999999999999999999999 999999997531000
Q ss_pred -------------------eeEEE--------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCC
Q 003177 764 -------------------ECIHE--------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK 815 (842)
Q Consensus 764 -------------------~~i~~--------~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~ 815 (842)
..+.. .......+.+++|+|++.++++++.+|.|++||+.+++.+ .+.+|..
T Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~ 1004 (1249)
T 3sfz_A 925 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK 1004 (1249)
T ss_dssp EEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSS
T ss_pred eeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCC
Confidence 00000 1123467899999999999999999999999999998877 6678999
Q ss_pred CeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 816 LVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 816 ~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.|++++|+|++++|++++.||.|++||
T Consensus 1005 ~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 1005 AVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp CCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 999999999999999999999999996
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-35 Score=331.39 Aligned_cols=279 Identities=20% Similarity=0.307 Sum_probs=245.2
Q ss_pred CCeEEEEEcCCCC-EEEEE----------ECCCcEEEEecCCCe---EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 003177 561 SKVESCHFSPDGK-LLATG----------GHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 626 (842)
Q Consensus 561 ~~V~sv~fSpdg~-~Lasg----------s~Dg~I~vwd~~t~~---~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 626 (842)
..|.+++|+|+++ +|++| +.|+.|+|||+.++. .+..+ .|...|++++|+|++.+|++++.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 3588999999987 99999 889999999998875 33334 588999999999999999999999999
Q ss_pred EEEEcCC---CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc------eeeEE----eecCCeeEE
Q 003177 627 RVWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGVF----KCQSGATQM 693 (842)
Q Consensus 627 ~IWDl~t---~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~------~i~~~----~~~~~i~~v 693 (842)
++||+.+ +...+..+.+|...|.+++|+|++..+|++++.|+.|++||+.+++ ....+ .+...+.++
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 9999987 3346788889999999999999966688899999999999999876 33332 345679999
Q ss_pred EEeCC-CCEEEEEEcCCeEEEEECCCCeEEEEEeCC------CCCEEEEEEcCCC-CEEEEEe-CC---eEEEEEcCCCC
Q 003177 694 RFQPR-LGRILAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSG-EYLASVS-DE---LVRVWSIGSGS 761 (842)
Q Consensus 694 ~~sp~-g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h------~~~V~sl~~spdg-~~Lasgs-Dg---~I~IwDl~s~~ 761 (842)
+|+|+ +..+++++.|+.|++||+++++.+..+..| ...|.+++|+|++ .+|++++ |+ .|++||+++..
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 99999 788999999999999999999999988876 7899999999997 6888888 77 99999999863
Q ss_pred CceeEEEee-cCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCC-CEEEEEeCCCc
Q 003177 762 KGECIHELS-CTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKC 837 (842)
Q Consensus 762 ~~~~i~~~~-~~~~~I~sv~~sp-dg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg-~~Lasgs~DG~ 837 (842)
..+..+. .|...|.+++|+| ++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++ .+|++++.||.
T Consensus 252 --~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 252 --TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp --SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred --CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 3455666 7889999999999 8999999999999999999998877 677999999999999999 89999999999
Q ss_pred EEEcC
Q 003177 838 VKIWK 842 (842)
Q Consensus 838 V~IWd 842 (842)
|+|||
T Consensus 330 i~iw~ 334 (416)
T 2pm9_A 330 IEVQT 334 (416)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 50
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.9e-33 Score=318.56 Aligned_cols=296 Identities=20% Similarity=0.361 Sum_probs=262.1
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~ 590 (842)
+.++++|+.|+.|++|..... ..+..+.+|.+.|++++|+ +.+|++|+.||.|++||+.
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTG-------------------KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC-------------------CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred CCEEEEEECCCcEEEEECCCC-------------------cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 468899999999999976432 2356778999999999998 5699999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcE
Q 003177 591 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 670 (842)
Q Consensus 591 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 670 (842)
+++.+..+.+|...|.+++|+ +.+|++++.||+|++||+.++. .+..+.+|...|.+++| ++. ++++++.||.|
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i 261 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--DGR-RVVSGAYDFMV 261 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--CSS-CEEEEETTSCE
T ss_pred cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--CCC-EEEEEcCCCEE
Confidence 999999999999999999995 5689999999999999999865 47788899999999999 344 67799999999
Q ss_pred EEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 003177 671 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 748 (842)
Q Consensus 671 ~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 748 (842)
++||+++++++..+.. ...+.++.| ++..+++++.|+.|++||+++++++..+.+|...+.++.++ +.+|++++
T Consensus 262 ~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 337 (445)
T 2ovr_B 262 KVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNA 337 (445)
T ss_dssp EEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEET
T ss_pred EEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeC
Confidence 9999999999888874 567889988 78899999999999999999999999999999999988874 66888888
Q ss_pred CCeEEEEEcCCCCCceeEEEeec---CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-E-----ccCCCCeeE
Q 003177 749 DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L-----SAHDKLVSS 819 (842)
Q Consensus 749 Dg~I~IwDl~s~~~~~~i~~~~~---~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~-~-----~~h~~~V~s 819 (842)
|+.|++||++++ .++..+.. |...|.+++|+ +.+|++++.||.|++||+.+++.+. + ..|.+.|++
T Consensus 338 dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 412 (445)
T 2ovr_B 338 DSTVKIWDIKTG---QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 412 (445)
T ss_dssp TSCEEEEETTTC---CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred CCeEEEEECCCC---cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEE
Confidence 999999999887 66777765 77889999996 5799999999999999999998873 3 378899999
Q ss_pred EEEeCCCCEEEEEeCCCc----EEEcC
Q 003177 820 LAASTVNGMVASASHDKC----VKIWK 842 (842)
Q Consensus 820 la~spdg~~Lasgs~DG~----V~IWd 842 (842)
++|+|++.+|++|+.||+ |.|||
T Consensus 413 ~~~s~~~~~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 413 IRASNTKLVCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred EEecCCEEEEEEcccCCCCccEEEEEE
Confidence 999999999999999998 99986
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.1e-34 Score=309.44 Aligned_cols=278 Identities=17% Similarity=0.245 Sum_probs=243.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--
Q 003177 559 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-- 636 (842)
Q Consensus 559 H~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~-- 636 (842)
|.+.|.+++|+|||++++++..++.+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 456799999999999999998888887877665555555558999999999999999999998 99999999987543
Q ss_pred eeeEee--cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc--eeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeE
Q 003177 637 SLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 711 (842)
Q Consensus 637 ~i~~~~--~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~--~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I 711 (842)
.+..+. .|...|.+++|+|++. +|++++.|+.|++||+.+++ ....+. +...+.+++|+|++..+++++.|+.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 223333 7899999999999976 66688899999999999887 344443 35569999999999999999999999
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003177 712 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 790 (842)
Q Consensus 712 ~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~s 790 (842)
++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+. +...+.+++|+|++.+|++
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHD-FTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEE-CSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeeec-CCCceEEEEECCCCCEEEE
Confidence 9999999999999999999999999999999999998 999999999987 5555553 6778999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 791 IGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 791 gs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++.++.|++||+.+++...+..|...|.+++|+|++++|++++.||.|++||
T Consensus 242 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 9999999999999999989999999999999999999999999999999996
No 52
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=350.46 Aligned_cols=191 Identities=13% Similarity=0.130 Sum_probs=162.3
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEec
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~ 589 (842)
...++++|+.|+.|++|..... .... ...|...|.+++|+| |++|++++.|++|+|||+
T Consensus 28 dg~~lAsgs~Dg~I~lw~~~~~-------------------~~~~-~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~ 86 (902)
T 2oaj_A 28 TQNLLAIATVTGEVHIYGQQQV-------------------EVVI-KLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSL 86 (902)
T ss_dssp TTTEEEEEETTSEEEEECSTTC-------------------EEEE-ECSSCCCEEEEEEET-TTEEEEEETTCEEEEEET
T ss_pred CCCEEEEEeCCCEEEEEeCCCc-------------------EEEE-EcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEEC
Confidence 3478999999999999954221 1112 235788999999999 889999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee----------eEeecCccceEEEEEcCCCCc
Q 003177 590 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL----------RTFTGHSTTVMSLDFHPSKED 659 (842)
Q Consensus 590 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i----------~~~~~h~~~V~sl~fspdg~~ 659 (842)
.+++++..+. |...|++++|+|++++|++|+.||+|++||++++.... ..+.+|...|.+++|+|++..
T Consensus 87 ~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~ 165 (902)
T 2oaj_A 87 YSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG 165 (902)
T ss_dssp TTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred CCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC
Confidence 9999988885 77899999999999999999999999999998765311 234678899999999998666
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEEeec-------------------CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003177 660 LLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQMRFQPRLGRILAAAIENYISILDVETQV 720 (842)
Q Consensus 660 llasgs~Dg~I~vwDl~t~~~i~~~~~~-------------------~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~ 720 (842)
++++++.||.| +||+++++++..+..+ ..|.+++|+|++.+|++++.|+.|++||+++++
T Consensus 166 ~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 166 TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 88899999999 9999999988887654 569999999999999999999999999998766
Q ss_pred EEE
Q 003177 721 CRL 723 (842)
Q Consensus 721 ~~~ 723 (842)
++.
T Consensus 245 ~~~ 247 (902)
T 2oaj_A 245 MIM 247 (902)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 53
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.9e-33 Score=343.43 Aligned_cols=309 Identities=20% Similarity=0.293 Sum_probs=270.9
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~ 590 (842)
..++++|+.|+.|++|..... ..+..+.+|.+.|++++|+|++++|++|+.||.|+|||+.
T Consensus 25 ~~~la~~~~~g~v~iwd~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 25 EPWVLTTLYSGRVEIWNYETQ-------------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp SSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred CCEEEEEeCCCEEEEEECCCC-------------------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 378999999999999965332 2456778999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcE
Q 003177 591 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 670 (842)
Q Consensus 591 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 670 (842)
+++.+..+.+|...|++++|+|++.+|++++.||.|++||+.++......+.+|...|.+++|+|++..++++++.||.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 99999999999999999999999999999999999999999987667788899999999999999445578899999999
Q ss_pred EEEECCCCceeeEEeec--CCeeEEEEeC--CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 003177 671 RYWSINNGSCAGVFKCQ--SGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 746 (842)
Q Consensus 671 ~vwDl~t~~~i~~~~~~--~~i~~v~~sp--~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Las 746 (842)
++||+.++.....+... ..+.+++|+| ++..+++++.||.|++||+.+++++..+.+|...|.+++|+|++.+|++
T Consensus 166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 99999988877776643 6799999999 9999999999999999999999999999999999999999999999999
Q ss_pred Ee-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCe----------EEE-----
Q 003177 747 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK----------TLT----- 809 (842)
Q Consensus 747 gs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~-L~sgs~dg~I~Iwdl~~~~----------~~~----- 809 (842)
++ ||.|++||+.++ ..+..+..+...+.+++|+|++.. +++++.++.+.+|++.... .+.
T Consensus 246 ~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 322 (814)
T 3mkq_A 246 GSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKN 322 (814)
T ss_dssp EETTSCEEEEETTTC---SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTT
T ss_pred EeCCCeEEEEECCCC---cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECccc
Confidence 99 999999999987 778888888999999999999874 3666677788899875432 111
Q ss_pred -----------------------------EccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 810 -----------------------------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 810 -----------------------------~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
...+...+.+++|+|+|++|++++ ||.+.||+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 323 AAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp SCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred ccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEE
Confidence 123445688999999999999888 88999985
No 54
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2e-33 Score=315.68 Aligned_cols=292 Identities=21% Similarity=0.338 Sum_probs=232.6
Q ss_pred ccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003177 507 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 586 (842)
Q Consensus 507 l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~v 586 (842)
+.....++++|+ ++.+++|...+................... ........+...|++++|+|+|++||+|+.|+.|+|
T Consensus 72 fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~i 149 (393)
T 1erj_A 72 FSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN-LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRI 149 (393)
T ss_dssp ECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccccccc-ccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEE
Confidence 344457888886 688999976543211000000000000000 001112234556999999999999999999999999
Q ss_pred EecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeC
Q 003177 587 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 666 (842)
Q Consensus 587 wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~ 666 (842)
||+.+++.+..+.+|...|++++|+|++.+|++++.|++|++||+.++.. ...+. +...|.+++|+|....+|++++.
T Consensus 150 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~s~ 227 (393)
T 1erj_A 150 WDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGKYIAAGSL 227 (393)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCCEEEEEET
T ss_pred EECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEEE-cCCCcEEEEEECCCCCEEEEEcC
Confidence 99999999999999999999999999999999999999999999998653 34443 66789999999954558889999
Q ss_pred CCcEEEEECCCCceeeEEe--------ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC------------eEEEEEe
Q 003177 667 NSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQ------------VCRLKLQ 726 (842)
Q Consensus 667 Dg~I~vwDl~t~~~i~~~~--------~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~------------~~~~~l~ 726 (842)
|+.|++||+++++++..+. +...|.+++|+|++.+|++++.|+.|++||+++. .+...+.
T Consensus 228 d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~ 307 (393)
T 1erj_A 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307 (393)
T ss_dssp TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEE
T ss_pred CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEe
Confidence 9999999999998877662 3567999999999999999999999999999753 4566788
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC------CCCEEEEEEcCCeEEE
Q 003177 727 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP------TFPSLLVIGCYETLEL 799 (842)
Q Consensus 727 ~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~sp------dg~~L~sgs~dg~I~I 799 (842)
+|...|.+++|++++.+|++++ |+.|++||+.++ .++..+.+|...|.+++|++ ++.+|++++.|++|+|
T Consensus 308 ~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~i 384 (393)
T 1erj_A 308 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 384 (393)
T ss_dssp CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEE
Confidence 8999999999999999999999 999999999988 67888899999999999986 6789999999999999
Q ss_pred EECCCC
Q 003177 800 WNMTEN 805 (842)
Q Consensus 800 wdl~~~ 805 (842)
|++...
T Consensus 385 W~~~~~ 390 (393)
T 1erj_A 385 WKYKKI 390 (393)
T ss_dssp EEEEEC
T ss_pred Cccccc
Confidence 997643
No 55
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-33 Score=310.44 Aligned_cols=273 Identities=23% Similarity=0.414 Sum_probs=217.0
Q ss_pred eEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEe-cC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEecC
Q 003177 513 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 513 ~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l-~g-H~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~ 590 (842)
++++|+.|+.|++|...... +..+..+ .+ |.+.|.+++|+|++++||+|+.|++|+|||+.
T Consensus 26 ~las~~~D~~i~lw~~~~~~-----------------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDD-----------------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp EEEEEESSSCEEEEECSSSC-----------------CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred EEEEEcCCCEEEEEEecCCC-----------------eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence 89999999999999664321 1223344 34 99999999999999999999999999999984
Q ss_pred -------CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---ceeeEeecCccceEEEEEcCCCCcE
Q 003177 591 -------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDL 660 (842)
Q Consensus 591 -------t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~---~~i~~~~~h~~~V~sl~fspdg~~l 660 (842)
..+.+..+.+|...|.+++|+|++++|++|+.|++|+|||+.... .++..+.+|...|.+++|+|++. +
T Consensus 89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~ 167 (330)
T 2hes_X 89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-L 167 (330)
T ss_dssp ------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-E
T ss_pred cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-E
Confidence 345677889999999999999999999999999999999995332 34667889999999999999976 7
Q ss_pred EEEEeCCCcEEEEECCCC--ceeeEEe-ecCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCC--------eEEEEEeC
Q 003177 661 LCSCDNNSEIRYWSINNG--SCAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--------VCRLKLQG 727 (842)
Q Consensus 661 lasgs~Dg~I~vwDl~t~--~~i~~~~-~~~~i~~v~~sp~--g~~l~~~s~dg~I~IwDl~t~--------~~~~~l~~ 727 (842)
|++++.|++|++||+.++ +++..+. +...|.+++|+|+ +..+++++.|+.|++||++.+ .+...+..
T Consensus 168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 247 (330)
T 2hes_X 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD 247 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS
T ss_pred EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc
Confidence 779999999999999876 5666665 4567999999998 678999999999999998754 44555555
Q ss_pred -CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC-ceEEEEEeC--CCCEEEEEEcCCeEEEEEC
Q 003177 728 -HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN-KFHSCVFHP--TFPSLLVIGCYETLELWNM 802 (842)
Q Consensus 728 -h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~-~I~sv~~sp--dg~~L~sgs~dg~I~Iwdl 802 (842)
|...|.+++|++++ +|++++ |+.|+|||+.++...........|.. .|.+++|+| ++.+|++++.|+.|+|||+
T Consensus 248 ~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 248 VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 89999999999766 666666 99999999876521112233356766 899999999 6889999999999999998
Q ss_pred CC
Q 003177 803 TE 804 (842)
Q Consensus 803 ~~ 804 (842)
.+
T Consensus 327 ~~ 328 (330)
T 2hes_X 327 EK 328 (330)
T ss_dssp --
T ss_pred cc
Confidence 64
No 56
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.9e-33 Score=330.91 Aligned_cols=305 Identities=17% Similarity=0.284 Sum_probs=264.1
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCC-eEEEEEcC--CCCEEEEEECCCcEEE
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSP--DGKLLATGGHDKKAVL 586 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~-V~sv~fSp--dg~~Lasgs~Dg~I~v 586 (842)
...++++++ ++.+.+|...+... .......+.+|.+. |++++|+| ++++||+|+.||.|+|
T Consensus 29 dg~~l~~~~-~~~v~v~~~~~~~~---------------~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 29 TTNAIAYPC-GKSAFVRCLDDGDS---------------KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp TTTEEEEEE-TTEEEEEECCSSCC---------------SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CCCEEEEec-CCeEEEEECCCCCC---------------ccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 346777777 78899996643210 11246778999999 99999999 9999999999999999
Q ss_pred EecCCC--------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEEcCCCCceeeEeecCccceEEEEEc
Q 003177 587 WCTESF--------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 654 (842)
Q Consensus 587 wd~~t~--------~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g~I~IWDl~t~~~~i~~~~~h~~~V~sl~fs 654 (842)
||+.++ +.+..+..|...|.+++|+|++++|++++.+ +.|++||.. ..+..+.+|...|.+++|+
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~---~~~~~~~~~~~~v~~~~~~ 169 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGHSQRINACHLK 169 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC---CEEEECCSCSSCEEEEEEC
T ss_pred EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC---CcceeeecCCccEEEEEEC
Confidence 999754 6778888999999999999999999999988 789999832 3578888999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cC---CeeEEEEeCC-CCEEEEEEcCCeEEEEECCCCeEEEEE-e--
Q 003177 655 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QS---GATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKL-Q-- 726 (842)
Q Consensus 655 pdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~---~i~~v~~sp~-g~~l~~~s~dg~I~IwDl~t~~~~~~l-~-- 726 (842)
|++..++++++.|+.|++||+.+++++..+.. .. .|.+++|+|+ +.++++++.|+.|++||+++++.+..+ .
T Consensus 170 ~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 249 (615)
T 1pgu_A 170 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ 249 (615)
T ss_dssp SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT
T ss_pred CCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccc
Confidence 99987888999999999999999999888874 44 6999999999 999999999999999999999999998 6
Q ss_pred -CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC----CCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003177 727 -GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTFPSLLVIGCYETLELW 800 (842)
Q Consensus 727 -~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~----~~~I~sv~~spdg~~L~sgs~dg~I~Iw 800 (842)
.|...|.+++|+ ++.+|++++ |+.|++||++++ ..+..+..+ ...+.++.|. ++.++++++.++.|++|
T Consensus 250 ~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~ 324 (615)
T 1pgu_A 250 EPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFY 324 (615)
T ss_dssp BCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEE
T ss_pred cccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEE
Confidence 899999999999 999999999 999999999987 677777665 3667888886 88999999999999999
Q ss_pred ECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 801 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 801 dl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|+.+++.+ .+..|...|.+++| |+ |++++.||.|++||
T Consensus 325 d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 325 ELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWS 363 (615)
T ss_dssp ETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETT
T ss_pred ECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEE
Confidence 99988776 67788889999988 77 77777888888875
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.4e-33 Score=320.21 Aligned_cols=280 Identities=18% Similarity=0.302 Sum_probs=246.6
Q ss_pred eEEEEecCCCCCe-EEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003177 551 TEFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 629 (842)
Q Consensus 551 ~~i~~l~gH~~~V-~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 629 (842)
.....+.+|.+.| .|+.| ++++|++|+.||.|++||+.+++.+..+.+|...|++++|++++ +|++|+.||+|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3456889999885 66666 56799999999999999999999999999999999999999987 99999999999999
Q ss_pred EcCCCCceeeEeecCccceEEEEEcCC-CCcEEEEEeCCCcEEEEECCCCceee-----------------------EEe
Q 003177 630 DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAG-----------------------VFK 685 (842)
Q Consensus 630 Dl~t~~~~i~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vwDl~t~~~i~-----------------------~~~ 685 (842)
|+.++. .+..+.+|...|.+++|++. +..++++++.|+.|++||++++.... .+.
T Consensus 189 d~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 189 DIKKGC-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp ETTTTE-EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred ECCCCc-EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 999865 57888899999999999952 34578899999999999998876432 222
Q ss_pred -ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003177 686 -CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 763 (842)
Q Consensus 686 -~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~ 763 (842)
+...+.+ +++++..+++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |+.|++||++++
T Consensus 268 ~~~~~v~~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--- 342 (464)
T 3v7d_B 268 GHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG--- 342 (464)
T ss_dssp CCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---
T ss_pred CccceEEE--EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---
Confidence 2233444 467889999999999999999999999999999999999999999999999999 999999999987
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 764 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 764 ~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.++..+..|...|.++.|+ +.+|++++.|+.|++||+.++.......|...+..++|++++.+|++++ ||.|+|||
T Consensus 343 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 343 ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 7889999999999999998 4699999999999999999988776667888899999999999999998 89999996
No 58
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1e-32 Score=299.73 Aligned_cols=278 Identities=15% Similarity=0.251 Sum_probs=242.3
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~ 590 (842)
..++++|+.|++|++|....... ........+.+|...|.+++|+|++++|++++.|+.|++|+..
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~~--------------~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~ 116 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDET--------------NYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT 116 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSSS--------------CSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEcCCCeEEEEECCCCCc--------------ccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeec
Confidence 36899999999999997654321 1123467789999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCC-cEEEEEeCCCc
Q 003177 591 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSE 669 (842)
Q Consensus 591 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~-~llasgs~Dg~ 669 (842)
..........+...+..+.+++++.+|++++.|+.+++||+...........+|...|.+++|++++. .++++++.|+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~ 196 (340)
T 4aow_A 117 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL 196 (340)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE
Confidence 99999888889999999999999999999999999999999876655666778999999999998754 46788999999
Q ss_pred EEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 003177 670 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 748 (842)
Q Consensus 670 I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs 748 (842)
|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||+++.+++..+.. ...|.+++|+|++.+++++.
T Consensus 197 i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 275 (340)
T 4aow_A 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAAT 275 (340)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEEEEE
T ss_pred EEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCceeeccC
Confidence 99999999998888764 56799999999999999999999999999999999988874 46899999999999888878
Q ss_pred CCeEEEEEcCCCCCceeEEE---------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003177 749 DELVRVWSIGSGSKGECIHE---------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 806 (842)
Q Consensus 749 Dg~I~IwDl~s~~~~~~i~~---------~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~ 806 (842)
|+.|+|||+++. ..+.. ...|...|++++|+|++++|++++.|+.|+|||+.+|+
T Consensus 276 d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 276 GPSIKIWDLEGK---IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TTEEEEEETTTT---EEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCEEEEEECCCC---eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999999876 33333 34577899999999999999999999999999998875
No 59
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.1e-33 Score=330.56 Aligned_cols=302 Identities=18% Similarity=0.234 Sum_probs=251.5
Q ss_pred eEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCC---CeEEEEEcCC-CCEEEEEECCCcEEEEe
Q 003177 513 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPD-GKLLATGGHDKKAVLWC 588 (842)
Q Consensus 513 ~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~---~V~sv~fSpd-g~~Lasgs~Dg~I~vwd 588 (842)
++++|+.|+.+++|.... ...+..+.+|.+ .|++++|+|+ +++|++++.||.|++||
T Consensus 175 ~l~~~~~d~~v~vwd~~~-------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPP-------------------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp EEEEEETTTEEEEEETTT-------------------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred EEEEEeCCCcEEEEeCCC-------------------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 788999999999996422 234667889999 9999999999 99999999999999999
Q ss_pred cCCCeEEEEe-c---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce---------------------------
Q 003177 589 TESFTVKSTL-E---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--------------------------- 637 (842)
Q Consensus 589 ~~t~~~~~~l-~---~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~--------------------------- 637 (842)
+.+++.+..+ . .|...|.+++|+ ++.+|++++.|+.|++||+.++...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 314 (615)
T 1pgu_A 236 GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 314 (615)
T ss_dssp TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred CCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEE
Confidence 9999999999 6 899999999999 9999999999999999999854321
Q ss_pred -----------------eeEeecCccceEEEEEcCC---------------------------------CCcEEEEEeCC
Q 003177 638 -----------------LRTFTGHSTTVMSLDFHPS---------------------------------KEDLLCSCDNN 667 (842)
Q Consensus 638 -----------------i~~~~~h~~~V~sl~fspd---------------------------------g~~llasgs~D 667 (842)
+..+.+|...|.+++| |+ +. .+++++.|
T Consensus 315 ~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d 392 (615)
T 1pgu_A 315 LSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISWD 392 (615)
T ss_dssp EETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEETT
T ss_pred EECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCc-EEEEEeCC
Confidence 1122234444444444 32 23 34455666
Q ss_pred CcEEEEECC----------------------------------CCceeeEEeecCCeeEEEEeCCCCEEEEEEc-CCeEE
Q 003177 668 SEIRYWSIN----------------------------------NGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYIS 712 (842)
Q Consensus 668 g~I~vwDl~----------------------------------t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~-dg~I~ 712 (842)
+.|++||+. +++.+..+.+...+.+++|+ +.++++++. |+.|+
T Consensus 393 ~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 393 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQ 470 (615)
T ss_dssp TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEE
T ss_pred CCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEE
Confidence 666666554 34445555556678888888 789999999 99999
Q ss_pred EEECCCCeEE-EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeC------
Q 003177 713 ILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHP------ 783 (842)
Q Consensus 713 IwDl~t~~~~-~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~sv~~sp------ 783 (842)
+||+.++... ..+..|...|++++|+|++++|++++ |+.|++||+.++ +.+..+.. |...|++++|+|
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h~~~v~~~~~sp~~~~~~ 547 (615)
T 1pgu_A 471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGAN 547 (615)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC----
T ss_pred EEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---cceeEeecCCCCceeEEEEcCcccccc
Confidence 9999988665 66778999999999999999999999 999999999987 77777777 999999999999
Q ss_pred ----CCCEEEEEEcCCeEEEEECCCC-eEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 784 ----TFPSLLVIGCYETLELWNMTEN-KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 784 ----dg~~L~sgs~dg~I~Iwdl~~~-~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++.+|++++.|+.|++||+.++ +.+ .+.+|...|++++|+|++. |++++.||.|+|||
T Consensus 548 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred ccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 9999999999999999999987 444 6779999999999999999 99999999999996
No 60
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.2e-34 Score=322.06 Aligned_cols=283 Identities=19% Similarity=0.336 Sum_probs=241.0
Q ss_pred CeeEEEEecCCCCcccccCCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003177 486 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 565 (842)
Q Consensus 486 ~~s~~~~~~~~~~~~~~~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~s 565 (842)
....+.|++++ .++++|+.|++|++|..... .....+.+|...|.+
T Consensus 68 ~V~~~~~sp~~---------------~~l~s~s~D~~v~iWd~~~~-------------------~~~~~~~~h~~~v~~ 113 (380)
T 3iz6_a 68 KVYSLDWTPEK---------------NWIVSASQDGRLIVWNALTS-------------------QKTHAIKLHCPWVME 113 (380)
T ss_dssp CEEEEEECTTS---------------SCEEEEETTSEEEEEETTTT-------------------EEEEEEECCCTTCCC
T ss_pred EEEEEEEcCCC---------------CEEEEEeCCCeEEEEECCCC-------------------ccceEEecCCCCEEE
Confidence 45666666644 68899999999999965332 235677899999999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEecCCCe-------EEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCce
Q 003177 566 CHFSPDGKLLATGGHDKKAVLWCTESFT-------VKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYS 637 (842)
Q Consensus 566 v~fSpdg~~Lasgs~Dg~I~vwd~~t~~-------~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~t~~~~ 637 (842)
++|+|+|++||+|+.|+.|+|||+.+.. ....+.+|.+.|.++.|.|+ +..|++|+.|++|++||+.++..
T Consensus 114 ~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~- 192 (380)
T 3iz6_a 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR- 192 (380)
T ss_dssp CEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-
T ss_pred EEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-
Confidence 9999999999999999999999986532 34567899999999999996 55799999999999999998764
Q ss_pred eeEe-----ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCe
Q 003177 638 LRTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENY 710 (842)
Q Consensus 638 i~~~-----~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~ 710 (842)
+..+ .+|...|.+++|++.+..+|++|+.|++|++||++ ..+++..+. +...|.+++|+|++.+|++++.|+.
T Consensus 193 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~ 272 (380)
T 3iz6_a 193 ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT 272 (380)
T ss_dssp EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC
T ss_pred EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe
Confidence 4444 67899999999998666688899999999999998 456666665 4567999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCC-------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe----ecCCCceEE
Q 003177 711 ISILDVETQVCRLKLQGHKN-------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL----SCTGNKFHS 778 (842)
Q Consensus 711 I~IwDl~t~~~~~~l~~h~~-------~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~----~~~~~~I~s 778 (842)
|++||++++..+..+..+.. .|++++|+|+|.+|++++ |+.|+|||+..+ +.+..+ ..|...|.+
T Consensus 273 i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA---EMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC---CEEEEECCSCSSCCCCCCE
T ss_pred EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC---ceEEEEecccCCCCCceEE
Confidence 99999999998888765432 489999999999999999 999999999887 455554 578899999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003177 779 CVFHPTFPSLLVIGCYETLELWNMTENK 806 (842)
Q Consensus 779 v~~spdg~~L~sgs~dg~I~Iwdl~~~~ 806 (842)
++|+|++.+|++++.|+.|+||++...+
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999999999987654
No 61
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=309.92 Aligned_cols=288 Identities=17% Similarity=0.264 Sum_probs=243.8
Q ss_pred eeeEEEEecCCCCCeEEEEEcCC---CCEEEEEECCCcEEEEecCC-CeEE-EEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 003177 549 TFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSAD 623 (842)
Q Consensus 549 ~~~~i~~l~gH~~~V~sv~fSpd---g~~Lasgs~Dg~I~vwd~~t-~~~~-~~l~~h~~~I~~l~fspdg~~Latgs~D 623 (842)
.+..+..+.+|.+.|+|++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 34567788999999999999999 69999999999999999987 5554 7888999999999999999999999999
Q ss_pred CeEEEEEcCCCCceeeEeecCccceEEEEE--cCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCE
Q 003177 624 RTVRVWDTENPDYSLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 701 (842)
Q Consensus 624 g~I~IWDl~t~~~~i~~~~~h~~~V~sl~f--spdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~ 701 (842)
|.|++||+.++. ...+..|...|.+++| ++++. +|++++.||.|++||+++++++..+..+..+.++.+.+ ..
T Consensus 108 g~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~ 182 (368)
T 3mmy_A 108 KTAKMWDLSSNQ--AIQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PM 182 (368)
T ss_dssp SEEEEEETTTTE--EEEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TE
T ss_pred CcEEEEEcCCCC--ceeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--Ce
Confidence 999999999765 3446779999999999 77755 67799999999999999999999999888777777775 58
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCE----EEEEe-CCeEEEEEcCCCCCceeEEEeecCCC
Q 003177 702 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEY----LASVS-DELVRVWSIGSGSKGECIHELSCTGN 774 (842)
Q Consensus 702 l~~~s~dg~I~IwDl~t~~~~~~l~--~h~~~V~sl~~spdg~~----Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~ 774 (842)
+++++.++.+.+||++......... .+...+.++++.++... +++++ |+.|++||++.......+..+..|..
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 262 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS 262 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence 8999999999999999875443332 24456677777665543 77777 99999999988754345556666654
Q ss_pred ------------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 775 ------------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 775 ------------~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
.|.+++|+|++.+|++++.|+.|++||+.+++.+ .+..|...|++++|+|++++|++++.|+..+.|
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 7999999999999999999999999999999887 677899999999999999999999998865444
No 62
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.5e-34 Score=311.95 Aligned_cols=278 Identities=14% Similarity=0.139 Sum_probs=242.4
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCe---EEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEE
Q 003177 552 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVR 627 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~---~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~ 627 (842)
.+....+|.+.|++++|+|++++|++++.|+.|+|||+.+++ ....+..|...|++++|+|++. +|++++.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 345567899999999999999999999999999999998876 3445568999999999999999 999999999999
Q ss_pred EEEc-CCCCceeeEeec--CccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC---------CceeeEEeecCCeeEEEE
Q 003177 628 VWDT-ENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRF 695 (842)
Q Consensus 628 IWDl-~t~~~~i~~~~~--h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t---------~~~i~~~~~~~~i~~v~~ 695 (842)
+||+ .++. ...+.+ |...|.+++|+| +. ++++++.|+.|++||+++ ++++..+.+...+.+++|
T Consensus 83 ~wd~~~~~~--~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (342)
T 1yfq_A 83 KVDLIGSPS--FQALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp EECSSSSSS--EEECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred EEEeccCCc--eEeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence 9999 7654 477788 999999999999 44 777999999999999998 777777777888999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCC-Ce--EEEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCC---CceeEE
Q 003177 696 QPRLGRILAAAIENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGS---KGECIH 767 (842)
Q Consensus 696 sp~g~~l~~~s~dg~I~IwDl~t-~~--~~~~l~~h~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~---~~~~i~ 767 (842)
++++ +++++.++.|++||+++ +. .......|...|.+++|+| ++.+|++++ |+.|++|++.... ....+.
T Consensus 159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 9986 99999999999999998 43 3445556888999999999 999999999 9999999998751 013445
Q ss_pred EeecCCC---------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccC-CCCeeEEEEeCCCCEEEEEeCCC
Q 003177 768 ELSCTGN---------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDK 836 (842)
Q Consensus 768 ~~~~~~~---------~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h-~~~V~sla~spdg~~Lasgs~DG 836 (842)
.+..|.. .|.+++|+|++.+|++++.|+.|++||+.+++.+ .+..| ...|.+++ |++++|++|+.||
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 5566544 9999999999999999999999999999999877 66777 99999999 9999999999999
Q ss_pred c
Q 003177 837 C 837 (842)
Q Consensus 837 ~ 837 (842)
.
T Consensus 315 ~ 315 (342)
T 1yfq_A 315 T 315 (342)
T ss_dssp H
T ss_pred c
Confidence 8
No 63
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.4e-35 Score=332.22 Aligned_cols=282 Identities=19% Similarity=0.276 Sum_probs=224.6
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEecCCCeE--EEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEE
Q 003177 554 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 629 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSp-dg~~Lasgs~Dg~I~vwd~~t~~~--~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IW 629 (842)
....+|...|+||+|+| ++++||+|+.||.|+|||+.+++. ...+.+|.+.|++|+|+| ++.+|++++.||+|+||
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 44567999999999999 567999999999999999987654 445568999999999998 68999999999999999
Q ss_pred EcCCCCceeeEee---cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCC-EEEEE
Q 003177 630 DTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RILAA 705 (842)
Q Consensus 630 Dl~t~~~~i~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~-~l~~~ 705 (842)
|+++.. ...+. .+...+.+++|+|++. +|++|+.||.|++||++.........+...|.+++|+|++. .++++
T Consensus 193 d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 193 DFKGNI--LRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp ETTSCE--EEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred eccCCc--eeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEe
Confidence 998643 23332 2334678999999976 67799999999999997544333333567899999999876 57788
Q ss_pred EcCCeEEEEECCCCeEEE---EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC------c
Q 003177 706 AIENYISILDVETQVCRL---KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN------K 775 (842)
Q Consensus 706 s~dg~I~IwDl~t~~~~~---~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~------~ 775 (842)
+.|+.|+|||+++.+... ...+|...|++++|+|+|.+|++++ |+.|+|||+.++ .+...+..|.. .
T Consensus 270 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~ 346 (435)
T 4e54_B 270 SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW---DCPLGLIPHPHRHFQHLT 346 (435)
T ss_dssp ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS---SSEEEECCCCCCCCSSSC
T ss_pred cCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC---ccceEEecccccccccce
Confidence 899999999998765432 3356999999999999999999999 999999999987 44444433322 2
Q ss_pred eEEEEEeCCCCEEEEEEc------------CCeEEEEECCCCeEE-EE-ccCCCCeeEE-EEeCCCCEEEEEeCCCcEEE
Q 003177 776 FHSCVFHPTFPSLLVIGC------------YETLELWNMTENKTL-TL-SAHDKLVSSL-AASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 776 I~sv~~spdg~~L~sgs~------------dg~I~Iwdl~~~~~~-~~-~~h~~~V~sl-a~spdg~~Lasgs~DG~V~I 840 (842)
+..+.|++++..++++.. ++.|++||..+++.+ .+ .+|...|.++ +|+|+|.+|++|+ |+.|+|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i 425 (435)
T 4e54_B 347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI 425 (435)
T ss_dssp CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence 344567777777666643 247999999999887 33 4788889887 6999999999876 789999
Q ss_pred cC
Q 003177 841 WK 842 (842)
Q Consensus 841 Wd 842 (842)
||
T Consensus 426 W~ 427 (435)
T 4e54_B 426 WS 427 (435)
T ss_dssp CC
T ss_pred EE
Confidence 97
No 64
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=7e-34 Score=307.14 Aligned_cols=285 Identities=18% Similarity=0.217 Sum_probs=219.3
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCC----eEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 003177 554 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVR 627 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~----~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~ 627 (842)
..+.+|.+.|++++|+|++++||+|+.||.|+|||+.++ +....+.+|...|++++|+| ++.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 356899999999999999999999999999999999876 56778889999999999999 699999999999999
Q ss_pred EEEcCCCC--------ceeeEeecCccceEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCceeeEEe------------
Q 003177 628 VWDTENPD--------YSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK------------ 685 (842)
Q Consensus 628 IWDl~t~~--------~~i~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~i~~~~------------ 685 (842)
+||+.++. ..+..+..|...|.+++|+|+ +. +|++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99998754 346778889999999999998 65 67789999999999999887654432
Q ss_pred --ecCCeeEEEEeCC---CCEEEEEEcCCeEEEEECCCCeE--EEEEeCCCCCEEEEEEcCCC----CEEEEEe-CCeEE
Q 003177 686 --CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVR 753 (842)
Q Consensus 686 --~~~~i~~v~~sp~---g~~l~~~s~dg~I~IwDl~t~~~--~~~l~~h~~~V~sl~~spdg----~~Lasgs-Dg~I~ 753 (842)
+...+.+++|+|+ +..+++++.++.+.+|+...+.. +..+.+|...|++++|+|++ .+|++++ |+.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 3456899999997 89999999999998888887754 77788899999999999998 7899998 99999
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCE
Q 003177 754 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGM 828 (842)
Q Consensus 754 IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~----dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~ 828 (842)
+||++.+. ...........+......+....+..+.. ...+.+|+....+.+ .+.+|...|++++|+|++++
T Consensus 244 iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 244 IFKITEKL---SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp EEEEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred EEeCCCCc---CccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 99998763 22222222333333344444433333332 335556665555555 67789999999999999999
Q ss_pred EEEEeCCCcEEEcC
Q 003177 829 VASASHDKCVKIWK 842 (842)
Q Consensus 829 Lasgs~DG~V~IWd 842 (842)
|++|+.||.|+|||
T Consensus 321 l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 321 LSSAGDDGKVRLWK 334 (351)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEe
Confidence 99999999999996
No 65
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.8e-33 Score=303.57 Aligned_cols=251 Identities=19% Similarity=0.292 Sum_probs=213.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC--CeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEE
Q 003177 553 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 628 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t--~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~I 628 (842)
+..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ .+.+.++.+|.+.|++++|+++ +.+|++|+.|++|+|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 346789999999999999999999999999999999974 4677899999999999999864 899999999999999
Q ss_pred EEcCCCC-ceeeEeecCccceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCce--eeEE-eecCCeeEEEEeCC-----
Q 003177 629 WDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSC--AGVF-KCQSGATQMRFQPR----- 698 (842)
Q Consensus 629 WDl~t~~-~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~--i~~~-~~~~~i~~v~~sp~----- 698 (842)
||+.++. ..+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++++.. ...+ .+...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9998764 2456678899999999999972 34788999999999999987632 2223 34567999999997
Q ss_pred --------CCEEEEEEcCCeEEEEECCCCe----EEEEEeCCCCCEEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCC
Q 003177 699 --------LGRILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSK 762 (842)
Q Consensus 699 --------g~~l~~~s~dg~I~IwDl~t~~----~~~~l~~h~~~V~sl~~spdg---~~Lasgs-Dg~I~IwDl~s~~~ 762 (842)
+..|++++.|+.|++||++++. ....+.+|...|.+++|+|++ .+|++++ |++|+|||+.+...
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence 4689999999999999998764 667888999999999999985 7899998 99999999987532
Q ss_pred ceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 763 GECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 763 ~~~i~~~--~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
......+ ..+...|.+++|+|++.+|++++.|+.|+||+..
T Consensus 242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 1222233 4567889999999999999999999999999976
No 66
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.8e-34 Score=321.82 Aligned_cols=278 Identities=18% Similarity=0.343 Sum_probs=231.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCe-----------EEEEeccCC------------CCeEEEEEcCCC
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHT------------QWITDVRFSPSL 614 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~-----------~~~~l~~h~------------~~I~~l~fspdg 614 (842)
.|.+.|++|+|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999999876 577888998 889999999998
Q ss_pred --CEEEEEeCCCeEEEEEcCCCCce--------------------------------------eeE-eecCccceEEEEE
Q 003177 615 --SRLATSSADRTVRVWDTENPDYS--------------------------------------LRT-FTGHSTTVMSLDF 653 (842)
Q Consensus 615 --~~Latgs~Dg~I~IWDl~t~~~~--------------------------------------i~~-~~~h~~~V~sl~f 653 (842)
.+|++++.|++|++||+.+.... ... ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998753221 112 3679999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCC-CceeeEE--------eecCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE--
Q 003177 654 HPSKEDLLCSCDNNSEIRYWSINN-GSCAGVF--------KCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-- 721 (842)
Q Consensus 654 spdg~~llasgs~Dg~I~vwDl~t-~~~i~~~--------~~~~~i~~v~~sp~g-~~l~~~s~dg~I~IwDl~t~~~-- 721 (842)
+|++. +|++| .|+.|++||+++ ++++..+ .+...|.+++|+|++ ..|++++.||.|++||++++..
T Consensus 186 ~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99977 55577 799999999994 4455433 345679999999998 8999999999999999999876
Q ss_pred --EEEEeCCCC------------CEEEEEEcCCCCEEEEEeCCeEEEEEcCC-CCCceeEEEeecCCCc-----------
Q 003177 722 --RLKLQGHKN------------QVHSVCWNTSGEYLASVSDELVRVWSIGS-GSKGECIHELSCTGNK----------- 775 (842)
Q Consensus 722 --~~~l~~h~~------------~V~sl~~spdg~~LasgsDg~I~IwDl~s-~~~~~~i~~~~~~~~~----------- 775 (842)
+..+..|.. .|.+++|+|++.+|++++++.|+|||+++ + .++..+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence 678888876 89999999999999999899999999987 4 455555555421
Q ss_pred ----eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccC---------------------------------CCCee
Q 003177 776 ----FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH---------------------------------DKLVS 818 (842)
Q Consensus 776 ----I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h---------------------------------~~~V~ 818 (842)
+..++|+|++.+|++++.|+.|+|||+.+++.+.+..| ...|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 33489999999999999999999999999988765544 35688
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEc
Q 003177 819 SLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 819 sla~spdg~~Lasgs~DG~V~IW 841 (842)
+++|+|++.+||+++.++ ++||
T Consensus 421 ~~~~~p~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNN-LYIF 442 (447)
T ss_dssp EEEECSSSSEEEEECSSC-EEEE
T ss_pred EEEECCCCCEEEEEecce-eeee
Confidence 999999999999998876 6666
No 67
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-33 Score=313.18 Aligned_cols=279 Identities=19% Similarity=0.347 Sum_probs=241.3
Q ss_pred EEecCCCCCeE--EEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 554 QLIPASTSKVE--SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 554 ~~l~gH~~~V~--sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
....+|...+. +++|+ +..+++++.|+.|++||+.+++....+.. |...|++++|+|++.+|++++.||.|++||
T Consensus 85 ~~~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp EECTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeCCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence 34457776644 45555 45678888999999999999998877765 889999999999999999999999999999
Q ss_pred cCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcC
Q 003177 631 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE 708 (842)
Q Consensus 631 l~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~d 708 (842)
+.++. .+..+.+|...|.+++|++ .++++++.||.|++||++ ....+..+. +...|.+++|+|++..|++++.|
T Consensus 163 ~~~~~-~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 238 (401)
T 4aez_A 163 VESQT-KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND 238 (401)
T ss_dssp TTTCC-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcCCe-EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence 99865 4778889999999999963 488899999999999998 455555554 46779999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003177 709 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 784 (842)
Q Consensus 709 g~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg-~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spd 784 (842)
+.|++||++++.++..+..|...|.+++|+|++ .++++++ |+.|++||+.++ .++..+. +...|.+++|+|+
T Consensus 239 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~-~~~~v~~~~~s~~ 314 (401)
T 4aez_A 239 NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---ARVNTVD-AGSQVTSLIWSPH 314 (401)
T ss_dssp SCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---CEEEEEE-CSSCEEEEEECSS
T ss_pred CeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---CEEEEEe-CCCcEEEEEECCC
Confidence 999999999999999999999999999999976 5666654 899999999987 5666664 5678999999999
Q ss_pred CCEEEEEE--cCCeEEEEECCCCeEE---EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 785 FPSLLVIG--CYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 785 g~~L~sgs--~dg~I~Iwdl~~~~~~---~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+.+|++++ .|+.|++||+.+++.. .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 315 ~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred CCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 99999965 7999999999987655 4668999999999999999999999999999996
No 68
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.9e-34 Score=317.39 Aligned_cols=279 Identities=13% Similarity=0.102 Sum_probs=227.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCC-------cEEEEecCCCe----------EEEEeccCCCCeEEEEEcCCCCEEEEEe--
Q 003177 561 SKVESCHFSPDGKLLATGGHDK-------KAVLWCTESFT----------VKSTLEEHTQWITDVRFSPSLSRLATSS-- 621 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg-------~I~vwd~~t~~----------~~~~l~~h~~~I~~l~fspdg~~Latgs-- 621 (842)
-+|+|++|+||+++||+|+.|. .|++|++.... ....+..|...|.+++++ +..+++++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4799999999999999997643 59999987542 123567888899998875 45666654
Q ss_pred ---------CCCeEEEEEcCCCCceeeEe--------ecCccceEEEEEcCCCCcEE-EEEeCCCcEEEEECCCCceeeE
Q 003177 622 ---------ADRTVRVWDTENPDYSLRTF--------TGHSTTVMSLDFHPSKEDLL-CSCDNNSEIRYWSINNGSCAGV 683 (842)
Q Consensus 622 ---------~Dg~I~IWDl~t~~~~i~~~--------~~h~~~V~sl~fspdg~~ll-asgs~Dg~I~vwDl~t~~~i~~ 683 (842)
.|+.|++|++......+... ..+...+.+++|+|||..++ ++++.|++|+|||+++++++..
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 47789999988655433222 23445689999999998764 4566799999999999999999
Q ss_pred EeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEe-CC----eEEEEE
Q 003177 684 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWS 756 (842)
Q Consensus 684 ~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~--~l~~h~~~V~sl~~spdg~~Lasgs-Dg----~I~IwD 756 (842)
+.+...|.+++|+|++.++++++ ++.+.+|+..++..+. ....|...|.+++|+|++.++++++ |+ .+++|+
T Consensus 173 ~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 173 IETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred eCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 99889999999999999888877 5567777777765554 3446888999999999999999988 65 688899
Q ss_pred cCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE-ccCCCCeeEEEEeCCCCEEEEEe
Q 003177 757 IGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-SAHDKLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 757 l~s~~~-~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~-~~h~~~V~sla~spdg~~Lasgs 833 (842)
+..... ......+..|...|++++|+|+|++|++++.|++|+|||+.+++++ .+ .+|...|++|+|+|||++||+||
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S 331 (365)
T 4h5i_A 252 IKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS 331 (365)
T ss_dssp EETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred cccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence 876532 1234567788899999999999999999999999999999999987 43 68999999999999999999999
Q ss_pred CCCcEEEcC
Q 003177 834 HDKCVKIWK 842 (842)
Q Consensus 834 ~DG~V~IWd 842 (842)
.|++|+|||
T Consensus 332 ~D~tvrvw~ 340 (365)
T 4h5i_A 332 AANTIHIIK 340 (365)
T ss_dssp TTSEEEEEE
T ss_pred CCCeEEEEE
Confidence 999999996
No 69
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.7e-33 Score=309.50 Aligned_cols=289 Identities=19% Similarity=0.360 Sum_probs=238.1
Q ss_pred EEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEecCCCeEEEEe-------------ccCCCCeEEEEEcC-CCCE
Q 003177 552 EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------------EEHTQWITDVRFSP-SLSR 616 (842)
Q Consensus 552 ~i~~l~gH~~~V~sv~fSp-dg~~Lasgs~Dg~I~vwd~~t~~~~~~l-------------~~h~~~I~~l~fsp-dg~~ 616 (842)
....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.+++....+ .+|...|.+++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3567789999999999999 9999999999999999999876554333 25999999999999 7889
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCC--cEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEE
Q 003177 617 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQM 693 (842)
Q Consensus 617 Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~--~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v 693 (842)
|++++.||.|++||+.++.. ...+. +...+.++.|++.+. .++++++.|+.|++||+++++.+..+. +...|.++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQT-ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192 (408)
T ss_dssp EEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred EEEEeCCCeEEEeeCCCCcc-ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence 99999999999999997653 44443 778899999998643 378899999999999999998888887 46679999
Q ss_pred EEeCCCC-EEEEEEcCCeEEEEECCCCe-EEEEE---------------eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEE
Q 003177 694 RFQPRLG-RILAAAIENYISILDVETQV-CRLKL---------------QGHKNQVHSVCWNTSGEYLASVS-DELVRVW 755 (842)
Q Consensus 694 ~~sp~g~-~l~~~s~dg~I~IwDl~t~~-~~~~l---------------~~h~~~V~sl~~spdg~~Lasgs-Dg~I~Iw 755 (842)
+|+|++. .+++++.||.|++||++++. ++..+ ..|...|.+++|+|++.+|++++ |+.|++|
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 9999988 48899999999999998764 44444 46888999999999999999998 9999999
Q ss_pred EcCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEE
Q 003177 756 SIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 832 (842)
Q Consensus 756 Dl~s~~~~~~i~~~--~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasg 832 (842)
|+.++......... ......+........+..+++++.++.|++||+.+++.+ .+.+|...|++++|+|++++|+++
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 352 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG 352 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence 99987432211110 111122222333344566888899999999999999887 677899999999999999999999
Q ss_pred eCCCcEEEcC
Q 003177 833 SHDKCVKIWK 842 (842)
Q Consensus 833 s~DG~V~IWd 842 (842)
+.||.|+|||
T Consensus 353 ~~dg~i~iw~ 362 (408)
T 4a11_B 353 SRDCNILAWV 362 (408)
T ss_dssp ETTSCEEEEE
T ss_pred CCCCeEEEEe
Confidence 9999999996
No 70
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.7e-32 Score=310.61 Aligned_cols=270 Identities=22% Similarity=0.405 Sum_probs=233.3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeE
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~ 640 (842)
+..|+||++ ++||+|. |++|+|||+.+++++..+ .+|...|++|+|+|++++|++|+.||+|+|||+.+++ .+..
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-~~~~ 184 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 184 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-EEEE
Confidence 567999976 4888776 899999999999887665 4678889999999999999999999999999999865 5788
Q ss_pred eecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc-eeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 641 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 718 (842)
Q Consensus 641 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t 718 (842)
+.+|...|.+++|++ .++++|+.|+.+++||..... .+..+. +...+..+.++|++..+++++.|+.|++||..+
T Consensus 185 ~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 185 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 999999999999874 488899999999999998644 334444 456799999999999999999999999999987
Q ss_pred Ce----EEEEEeCCCCCEEEEEEcCCCC-EEEEE--e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003177 719 QV----CRLKLQGHKNQVHSVCWNTSGE-YLASV--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 790 (842)
Q Consensus 719 ~~----~~~~l~~h~~~V~sl~~spdg~-~Lasg--s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~s 790 (842)
++ .+.....|...|.+++|+|++. +++++ + |++|++||+.++ .++..+.. ...+.++.|++++..+++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~-~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDA-HSQVCSILWSPHYKELIS 337 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeecc-ccceeeeeecCCCCeEEE
Confidence 64 3556778999999999999764 55544 3 899999999988 66666654 567899999999999988
Q ss_pred EE--cCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 791 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 791 gs--~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++ .|+.|+|||+.+++++ .+.+|.+.|++++|+|||.+||||+.||+|+|||
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 5889999999999887 7889999999999999999999999999999997
No 71
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.7e-33 Score=340.89 Aligned_cols=286 Identities=17% Similarity=0.308 Sum_probs=255.5
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 551 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
.....+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|+|||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-ceeeEEe-ecCCeeEEEEeC-CCCEEEEEEc
Q 003177 631 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQP-RLGRILAAAI 707 (842)
Q Consensus 631 l~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-~~i~~~~-~~~~i~~v~~sp-~g~~l~~~s~ 707 (842)
+.++. .+..+.+|...|.+++|+|++. +|++++.||.|++||+.++ .+...+. +...+.+++|+| ++..+++++.
T Consensus 84 ~~~~~-~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGE-KVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCc-EEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 99866 4778889999999999999987 5668999999999999987 5555555 456799999999 7889999999
Q ss_pred CCeEEEEECCCCeEEEEEeCCC-CCEEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003177 708 ENYISILDVETQVCRLKLQGHK-NQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 783 (842)
Q Consensus 708 dg~I~IwDl~t~~~~~~l~~h~-~~V~sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~sp 783 (842)
||.|++||+.++.....+..+. ..|.+++|+| ++.+|++++ |+.|++||+.++ .++..+..|...|.+++|+|
T Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHP 238 (814)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEECS
T ss_pred CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcC
Confidence 9999999999887777766554 8899999999 999999999 999999999887 78888888999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCC--EEEEEeCCCcEEEcC
Q 003177 784 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVKIWK 842 (842)
Q Consensus 784 dg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~--~Lasgs~DG~V~IWd 842 (842)
++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++. ++++++ |+.+.+|+
T Consensus 239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 9999999999999999999998877 6778889999999999987 455555 55566663
No 72
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-32 Score=353.44 Aligned_cols=285 Identities=21% Similarity=0.355 Sum_probs=260.3
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003177 554 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 633 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t 633 (842)
..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||+|+|||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeeEeecCccceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeE
Q 003177 634 PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 711 (842)
Q Consensus 634 ~~~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I 711 (842)
+. .+..+.+|...|.+++|+|++ ..++++++.|+.|++||+++++++..+. +...|.+++|+|++..+++++.||.|
T Consensus 689 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 689 GK-LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp CC-EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred Cc-eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 65 578889999999999999963 4578899999999999999999888776 45679999999999999999999999
Q ss_pred EEEECCCCeEEEEEeC-------------CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee-cCCCceE
Q 003177 712 SILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-CTGNKFH 777 (842)
Q Consensus 712 ~IwDl~t~~~~~~l~~-------------h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~-~~~~~I~ 777 (842)
++||++++.....+.. +...+.+++|+|+|.++++++++.|.+||+.++ ..+..+. .|...|.
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS---GLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC---CEEEEEECSSSSCCC
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC---CceeEEcCCCCCceE
Confidence 9999999887766542 233788999999999999999999999999987 4444444 7889999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 778 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 778 sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+++|+|++.++++++.++.|++||+.++..+ .+.+|...|++++|+|++++|++++.||.|++||
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999999999999999999999999877 7789999999999999999999999999999996
No 73
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.5e-34 Score=320.93 Aligned_cols=273 Identities=16% Similarity=0.207 Sum_probs=234.2
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEee
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 642 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~ 642 (842)
+++++|+|++++|++++.|+.|++||+.+++....+..| ..+....|++++++|++++.||.|++||+.++. ....+.
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~ 136 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-QREIDQ 136 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-EEEETT
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-eeeecc
Confidence 457999999999999999999999999987776666666 455666889999999999999999999998754 466677
Q ss_pred cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 003177 643 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 721 (842)
Q Consensus 643 ~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~ 721 (842)
+|...|.+++|+|++. +|++++.|+.|++||+++++++..+. +...|.+++|+|++..|++++.|+.|++||+++++.
T Consensus 137 ~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215 (420)
T ss_dssp SSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred cccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence 9999999999999977 67799999999999999999888887 467799999999999999999999999999999999
Q ss_pred EEEEeC---CCCCEEEEE---------------------EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-ecCCCc
Q 003177 722 RLKLQG---HKNQVHSVC---------------------WNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNK 775 (842)
Q Consensus 722 ~~~l~~---h~~~V~sl~---------------------~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~-~~~~~~ 775 (842)
+..+.. |...|.+++ |+|++++|++++ |+.|++||++++ ..+..+ ..|...
T Consensus 216 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~ 292 (420)
T 3vl1_A 216 IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTCS 292 (420)
T ss_dssp EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSSC
T ss_pred eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCCC
Confidence 988875 344555554 578999999999 999999999987 444444 457889
Q ss_pred eEEEEEeCCCC-EEEEEEcCCeEEEEECCCCeE--EEEcc-CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 776 FHSCVFHPTFP-SLLVIGCYETLELWNMTENKT--LTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 776 I~sv~~spdg~-~L~sgs~dg~I~Iwdl~~~~~--~~~~~-h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|.+++|+|++. +|++++.|+.|++||+.+++. ..+.. |...|.++.| +++++|++++.||.|+|||
T Consensus 293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 99999999999 999999999999999998753 35554 7778888865 5788999999999999996
No 74
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2e-32 Score=330.36 Aligned_cols=275 Identities=16% Similarity=0.270 Sum_probs=234.9
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~ 590 (842)
..++++|+.|+.|++|........ .......+.+|.+.|.+++|+|++++|++|+.||+|+|||+.
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~~--------------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDKA--------------YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA 460 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTTC--------------SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEeCCCcEEEEEccCCCcc--------------cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 368999999999999976543211 012346788999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeE---eecCccceEEEEEcCCCC-cEEEEEeC
Q 003177 591 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKE-DLLCSCDN 666 (842)
Q Consensus 591 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~---~~~h~~~V~sl~fspdg~-~llasgs~ 666 (842)
++..+..+.+|...|.+++|+|++++|++++.|++|+|||+..... ... ..+|...|.+++|+|++. .++++++.
T Consensus 461 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 539 (694)
T 3dm0_A 461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW 539 (694)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC
Confidence 9999999999999999999999999999999999999999865321 222 246889999999999863 57889999
Q ss_pred CCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEE
Q 003177 667 NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 745 (842)
Q Consensus 667 Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~La 745 (842)
|++|++||++++++...+. +...|.+++|+|++.+|++++.|+.|++||+++++++..+. +...|.+++|+|++.+|+
T Consensus 540 d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEE
T ss_pred CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEE
Confidence 9999999999999888776 45679999999999999999999999999999999888776 456899999999999999
Q ss_pred EEeCCeEEEEEcCCCCCceeEEEeecC-------------------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 746 SVSDELVRVWSIGSGSKGECIHELSCT-------------------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 746 sgsDg~I~IwDl~s~~~~~~i~~~~~~-------------------~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
++.++.|+|||++++ .++..+..+ ...+++++|+|++.+|++++.||.|+||++..
T Consensus 619 ~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 619 AATEHGIKIWDLESK---SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEETTEEEEEETTTT---EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEcCCCEEEEECCCC---CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 988999999999987 555444321 12368899999999999999999999999853
No 75
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7e-33 Score=308.44 Aligned_cols=276 Identities=17% Similarity=0.145 Sum_probs=241.9
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC----C---CEEEEEECCCcE
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD----G---KLLATGGHDKKA 584 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpd----g---~~Lasgs~Dg~I 584 (842)
.++++|+.|+.|++|........ ..+..+..+.+|...|++++|+|+ + ++|++++.||.|
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i 93 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNE-------------NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 93 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTC-------------CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred CeEEEEcCCCEEEEEECCCcccc-------------cCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence 68899999999999976554211 112345677799999999999999 9 999999999999
Q ss_pred EEEecCCCeE-----EEEeccC-----CCCeEEEEEc----CCCCE-EEEEeCCCeEEEEEcCC------CCceee----
Q 003177 585 VLWCTESFTV-----KSTLEEH-----TQWITDVRFS----PSLSR-LATSSADRTVRVWDTEN------PDYSLR---- 639 (842)
Q Consensus 585 ~vwd~~t~~~-----~~~l~~h-----~~~I~~l~fs----pdg~~-Latgs~Dg~I~IWDl~t------~~~~i~---- 639 (842)
++||+.+++. +..+..| ...|.+++|+ |++.+ |++++.||.|++||+.+ ... +.
T Consensus 94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~ 172 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPT 172 (397)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCE
T ss_pred EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCc
Confidence 9999988776 7888888 5999999999 99999 99999999999999987 443 33
Q ss_pred -Ee-------ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-------cCCeeEEEEeCCCCEEEE
Q 003177 640 -TF-------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILA 704 (842)
Q Consensus 640 -~~-------~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-------~~~i~~v~~sp~g~~l~~ 704 (842)
.+ ..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+.. ...+.+++|+|++.+|++
T Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~ 250 (397)
T 1sq9_A 173 LELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 250 (397)
T ss_dssp EEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred ceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence 55 4488999999999997 788999999999999999999988886 778999999999999999
Q ss_pred EEcC---CeEEEEECCCCeEEEEEeC-------------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE
Q 003177 705 AAIE---NYISILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 767 (842)
Q Consensus 705 ~s~d---g~I~IwDl~t~~~~~~l~~-------------h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~ 767 (842)
++.| +.|++||+++++.+..+.. |...|.+++|+|++.+|++++ |+.|+|||+.++ .++.
T Consensus 251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~ 327 (397)
T 1sq9_A 251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERIT 327 (397)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEE
T ss_pred EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeE
Confidence 9999 9999999999999999998 999999999999999999999 999999999987 7788
Q ss_pred Eee------cC---------------CCceEEEEEeCCC----------CEEEEEEcCCeEEEEECCCCe
Q 003177 768 ELS------CT---------------GNKFHSCVFHPTF----------PSLLVIGCYETLELWNMTENK 806 (842)
Q Consensus 768 ~~~------~~---------------~~~I~sv~~spdg----------~~L~sgs~dg~I~Iwdl~~~~ 806 (842)
.+. .| ...|.+++|+|++ .+|++++.|+.|++||+.+++
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 887 77 8999999999998 799999999999999998764
No 76
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.4e-32 Score=290.52 Aligned_cols=270 Identities=21% Similarity=0.391 Sum_probs=229.3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeE
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~ 640 (842)
+.+|+||+++ +||+|. |++|+|||+.+++++..+ .+|...|++++|+|++++|++|+.||+|++||+.+++ .+..
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 104 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-eEEE
Confidence 4779999886 777765 899999999999988766 4678889999999999999999999999999999865 5788
Q ss_pred eecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce-eeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 641 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 718 (842)
Q Consensus 641 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t 718 (842)
+.+|...+.++.+.+ .++++++.++.+++|+...... +..+. +...+..+.+.+++..+++++.|+.|++||+++
T Consensus 105 ~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 105 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 899999998888764 3888999999999999987643 33333 466799999999999999999999999999987
Q ss_pred Ce----EEEEEeCCCCCEEEEEEcCCCCEE-E--EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003177 719 QV----CRLKLQGHKNQVHSVCWNTSGEYL-A--SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 790 (842)
Q Consensus 719 ~~----~~~~l~~h~~~V~sl~~spdg~~L-a--sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~s 790 (842)
++ .......|...|.++++++++..+ . +++ ++.|++||.... ... ....+...+..+.|++++..+++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACL-SAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---CEE-EEEECSSCEEEEEEETTTTEEEE
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---ccc-ccccceeeeeeeeecccccceEE
Confidence 64 345566688899999999976533 3 333 789999999876 333 33446778999999999999888
Q ss_pred EE--cCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 791 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 791 gs--~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++ .|+.|+|||+.+++++ .+.+|.+.|++++|+|++++||||+.||+|+|||
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6889999999999887 7889999999999999999999999999999997
No 77
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-31 Score=291.89 Aligned_cols=271 Identities=14% Similarity=0.166 Sum_probs=241.0
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~ 590 (842)
..++++|+.|+.|++|...+. ..+..+.+|.+.|.+++|+|++++|++++.||.|++||+.
T Consensus 44 ~~~l~~~~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 44 GDLLFSCSKDSSASVWYSLNG-------------------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp SCEEEEEESSSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred CCEEEEEeCCCEEEEEeCCCc-------------------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 368999999999999965432 2456788999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCc----------eeeEeecCcc--ceEEEEE
Q 003177 591 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDY----------SLRTFTGHST--TVMSLDF 653 (842)
Q Consensus 591 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~t~~~----------~i~~~~~h~~--~V~sl~f 653 (842)
+++.+..+. |...|.+++|+|++.+|++++.+ +.|++||+..... .+..+..|.. .|.+++|
T Consensus 105 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 105 NGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp TCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred CCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 999998887 88999999999999999999999 9999999986542 3345556666 8999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCC-CceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCC
Q 003177 654 HPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 731 (842)
Q Consensus 654 spdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~ 731 (842)
+|++. +|++++.||.|++||+++ .+.+..+. +...|.+++|+|++.+|++++.|+.|++||+++++.+..+. +...
T Consensus 184 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~ 261 (369)
T 3zwl_B 184 STKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCP 261 (369)
T ss_dssp CGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred cCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCC
Confidence 99977 566889999999999998 67777776 46679999999999999999999999999999999988887 7889
Q ss_pred EEEEEEcCCCCEEEEEe-CC--------------eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003177 732 VHSVCWNTSGEYLASVS-DE--------------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 796 (842)
Q Consensus 732 V~sl~~spdg~~Lasgs-Dg--------------~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~ 796 (842)
+.+++|+|++.++++++ ++ .|++||+.++ ..+..+..|...|.+++|+|++.+|++++.|+.
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 338 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGF 338 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCCe
Confidence 99999999999999988 66 8999999888 778888899999999999999999999999999
Q ss_pred EEEEECCCCe
Q 003177 797 LELWNMTENK 806 (842)
Q Consensus 797 I~Iwdl~~~~ 806 (842)
|+||++..+.
T Consensus 339 v~iw~~~~~~ 348 (369)
T 3zwl_B 339 IRLHHFEKSY 348 (369)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECcccc
Confidence 9999997654
No 78
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.5e-32 Score=312.25 Aligned_cols=271 Identities=22% Similarity=0.401 Sum_probs=242.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003177 553 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 632 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 632 (842)
+....+|...|+|+.| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|+.||+|++||+.
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 4445678888999988 7899999999999999999999999999999999999999 78899999999999999999
Q ss_pred CCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceee---EEe-ecCCeeEEEEeCCCCEEEEEEcC
Q 003177 633 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG---VFK-CQSGATQMRFQPRLGRILAAAIE 708 (842)
Q Consensus 633 t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~---~~~-~~~~i~~v~~sp~g~~l~~~s~d 708 (842)
++. .+..+.+|...|.+++|+++ ++++|+.||.|++||+.++.... .+. +...|.++.| ++..+++++.|
T Consensus 202 ~~~-~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 202 TGE-MLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp SCC-EEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCc-EEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence 876 47888899999999999743 78899999999999999877652 232 4567888888 67899999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003177 709 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 787 (842)
Q Consensus 709 g~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~ 787 (842)
|.|++||+++++.+..+.+|...|.++.| ++.+|++++ |+.|++||++++ .++..+..|...|.+++| ++.+
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKR 348 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEC--CSSE
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC---CEEEEEeCCcCcEEEEEe--cCCE
Confidence 99999999999999999999999999999 467899888 999999999987 788889999999999999 7789
Q ss_pred EEEEEcCCeEEEEECCCCe---------EE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 788 LLVIGCYETLELWNMTENK---------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 788 L~sgs~dg~I~Iwdl~~~~---------~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|++++.||.|++||+.++. .+ .+.+|.+.|.+++| ++.+|++|+.||.|+|||
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 9999999999999987654 34 78899999999999 788999999999999997
No 79
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.5e-33 Score=302.49 Aligned_cols=277 Identities=15% Similarity=0.276 Sum_probs=232.3
Q ss_pred ceEEeccC---CCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC---CCEEEEEECCCcEE
Q 003177 512 RFVDDGSL---DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAV 585 (842)
Q Consensus 512 ~~l~~Gs~---d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpd---g~~Lasgs~Dg~I~ 585 (842)
.++++|+. |+.|++|...... .. .....+|...|.+++|+|+ +.+|++|+.||.|+
T Consensus 32 ~l~~~~s~~~~d~~v~iw~~~~~~-----------------~~-~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 93 (357)
T 3i2n_A 32 KFVTMGNFARGTGVIQLYEIQHGD-----------------LK-LLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93 (357)
T ss_dssp EEEEEEC--CCCEEEEEEEECSSS-----------------EE-EEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred eEEEecCccCCCcEEEEEeCCCCc-----------------cc-ceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence 57788887 8999999664321 01 1122378999999999998 69999999999999
Q ss_pred EEecCCCe-EEEEeccCCCCeEEEEE------cCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCcc----ceEEEE--
Q 003177 586 LWCTESFT-VKSTLEEHTQWITDVRF------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST----TVMSLD-- 652 (842)
Q Consensus 586 vwd~~t~~-~~~~l~~h~~~I~~l~f------spdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~----~V~sl~-- 652 (842)
+||+.+++ .+..+.+|...|.+++| ++++++|++++.||.|++||+.++...+..+..|.. .|.+++
T Consensus 94 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (357)
T 3i2n_A 94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFG 173 (357)
T ss_dssp EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEE
T ss_pred EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEE
Confidence 99999888 88899999999999955 678999999999999999999987755677766554 899998
Q ss_pred --EcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeC---CCCEEEEEEcCCeEEEEECCCCeEEEEE--
Q 003177 653 --FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKL-- 725 (842)
Q Consensus 653 --fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp---~g~~l~~~s~dg~I~IwDl~t~~~~~~l-- 725 (842)
|+|++. ++++++.||.|++||+++++......+...+.+++|+| ++..+++++.||.|++||+++++....+
T Consensus 174 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 252 (357)
T 3i2n_A 174 NAYNQEER-VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS 252 (357)
T ss_dssp CCCC-CCC-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred eccCCCCC-EEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee
Confidence 677766 67789999999999999999888888888999999999 8999999999999999999876544333
Q ss_pred ---eCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCc----------------eeEEEeecCCCceEEEEEeCC
Q 003177 726 ---QGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKG----------------ECIHELSCTGNKFHSCVFHPT 784 (842)
Q Consensus 726 ---~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~----------------~~i~~~~~~~~~I~sv~~spd 784 (842)
.+|...|++++|+|++. +|++++ |+.|++||++..... ..+..+..|...|.+++|+|+
T Consensus 253 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 332 (357)
T 3i2n_A 253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD 332 (357)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS
T ss_pred eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC
Confidence 48999999999999998 788888 999999999865433 467788889999999999999
Q ss_pred CCEEE-EEEcCCeEEEEECCCCeE
Q 003177 785 FPSLL-VIGCYETLELWNMTENKT 807 (842)
Q Consensus 785 g~~L~-sgs~dg~I~Iwdl~~~~~ 807 (842)
+.+|+ +++.|+.|+|||+.+.+.
T Consensus 333 ~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 333 KRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp STTEEEEEETTSEEEEEEECC---
T ss_pred CCeEEEEecCCCcEEEEECCCccc
Confidence 99998 799999999999987654
No 80
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.8e-32 Score=298.22 Aligned_cols=279 Identities=17% Similarity=0.226 Sum_probs=235.7
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEec
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~ 589 (842)
...++++|+.|+.|++|..... .+..+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 19 ~~~~l~~~~~d~~v~i~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 19 DRTQIAICPNNHEVHIYEKSGN-----------------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp TSSEEEEECSSSEEEEEEEETT-----------------EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEeCCCEEEEEeCCCC-----------------cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 3478899999999999965322 23457788899999999999999999999999999999999
Q ss_pred CCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc---eeeEeecCccceEEEEEcCCCCcEEEEE
Q 003177 590 ESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSC 664 (842)
Q Consensus 590 ~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~---~i~~~~~h~~~V~sl~fspdg~~llasg 664 (842)
.+++.... +..|...|.+++|+|++++|++++.|+.|++||++.... .......|...|.+++|+|++. +|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 160 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAG 160 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEE
Confidence 98875544 467999999999999999999999999999999997653 2334467899999999999876 67789
Q ss_pred eCCCcEEEEECC------------------CCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003177 665 DNNSEIRYWSIN------------------NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 725 (842)
Q Consensus 665 s~Dg~I~vwDl~------------------t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l 725 (842)
+.||.|++||++ .++++..+. +...+.+++|+|++.+|++++.|+.|++||+++++++..+
T Consensus 161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 999999999954 567777774 4567999999999999999999999999999999999999
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC--CC-----------------------------CceeE------EE
Q 003177 726 QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS--GS-----------------------------KGECI------HE 768 (842)
Q Consensus 726 ~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s--~~-----------------------------~~~~i------~~ 768 (842)
..|...|.+++|+|++.+|+++.|+.|++|++.+ +. ..... ..
T Consensus 241 ~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (372)
T 1k8k_C 241 ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG 320 (372)
T ss_dssp ECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CC
T ss_pred ccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccc
Confidence 9999999999999999999988899999999987 31 00111 22
Q ss_pred e-ecCCCceEEEEEe-CCC---CEEEEEEcCCeEEEEECCCCe
Q 003177 769 L-SCTGNKFHSCVFH-PTF---PSLLVIGCYETLELWNMTENK 806 (842)
Q Consensus 769 ~-~~~~~~I~sv~~s-pdg---~~L~sgs~dg~I~Iwdl~~~~ 806 (842)
+ .+|...|++++|+ +++ .+|++++.||.|++||+.+++
T Consensus 321 ~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 321 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 2 4788999999866 666 899999999999999987643
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.2e-32 Score=302.39 Aligned_cols=273 Identities=18% Similarity=0.253 Sum_probs=233.3
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~-gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~ 590 (842)
..+++++.|+.|++|...... ....+. .|.+.|++++|+|++++|++|+.||.|++||+.
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~-------------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGS-------------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCC-------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEECCCeEEEeeCCCCc-------------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 456778899999999764321 122222 389999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcE
Q 003177 591 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 670 (842)
Q Consensus 591 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 670 (842)
+++.+..+.+|...|.+++| ++.+|++++.||.|++||+......+..+.+|...|.+++|+|++. +|++++.|+.|
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v 241 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVV 241 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred CCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeE
Confidence 99999999999999999999 5679999999999999999976677888999999999999999866 67799999999
Q ss_pred EEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEE---cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 003177 671 RYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA---IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 746 (842)
Q Consensus 671 ~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s---~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Las 746 (842)
++||+++++++..+. +...|.+++|+|++..+++.+ .|+.|++||+++++++..+. +...|.+++|+|++.+|++
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEE
Confidence 999999998888775 567799999999876655544 59999999999999988886 6778999999999999998
Q ss_pred E--e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 747 V--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 747 g--s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
+ . |+.|+|||+.++.. .....+..|...|.+++|+|++.+|++++.|+.|++||+.+++.+
T Consensus 321 ~~g~~dg~i~v~~~~~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 321 THGFPDNNLSIWSYSSSGL-TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EECTTTCEEEEEEEETTEE-EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EeecCCCcEEEEecCCccc-eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 4 3 99999999988522 344456788999999999999999999999999999999998876
No 82
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-32 Score=339.94 Aligned_cols=330 Identities=11% Similarity=0.038 Sum_probs=245.7
Q ss_pred cCCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC-CCEEEEEECC
Q 003177 503 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHD 581 (842)
Q Consensus 503 ~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpd-g~~Lasgs~D 581 (842)
....+.....++++|+.|+.|++|+..........+...+. ....+.+|.+.|++++|+|+ +.+|++|+.|
T Consensus 102 ~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~--------~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d 173 (902)
T 2oaj_A 102 TSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK--------SSFFPAARLSPIVSIQWNPRDIGTVLISYEY 173 (902)
T ss_dssp EEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHH--------HHTCSSSCCCCCCEEEEETTEEEEEEEECSS
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccc--------cccccccCCCCeEEEEEccCCCCEEEEEeCC
Confidence 34445666789999999999999976543110000000000 00234789999999999996 5789999999
Q ss_pred CcEEEEecCCCeEEEEeccC------------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceee-Ee-
Q 003177 582 KKAVLWCTESFTVKSTLEEH------------------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TF- 641 (842)
Q Consensus 582 g~I~vwd~~t~~~~~~l~~h------------------~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~-~~- 641 (842)
|.| +||+.+++.+..+..| ...|++++|+|++.+|++++.||+|++||+.+++.... .+
T Consensus 174 g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~ 252 (902)
T 2oaj_A 174 VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVF 252 (902)
T ss_dssp CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSS
T ss_pred CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeec
Confidence 999 9999999999888766 57799999999999999999999999999988654221 12
Q ss_pred --ec-------------CccceEEEEEc----CCCCcEEEEEeCC-----------------------------------
Q 003177 642 --TG-------------HSTTVMSLDFH----PSKEDLLCSCDNN----------------------------------- 667 (842)
Q Consensus 642 --~~-------------h~~~V~sl~fs----pdg~~llasgs~D----------------------------------- 667 (842)
.. |...|.+++|+ |++..++++|+.|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~ 332 (902)
T 2oaj_A 253 ETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPK 332 (902)
T ss_dssp CSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCS
T ss_pred ccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCcc
Confidence 11 34578999995 3333556565433
Q ss_pred -----------------------------------------CcEEEEECCCCceeeE-------E-eecCCe--------
Q 003177 668 -----------------------------------------SEIRYWSINNGSCAGV-------F-KCQSGA-------- 690 (842)
Q Consensus 668 -----------------------------------------g~I~vwDl~t~~~i~~-------~-~~~~~i-------- 690 (842)
+.|++||+.++..... + .++..|
T Consensus 333 ~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~ 412 (902)
T 2oaj_A 333 QMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV 412 (902)
T ss_dssp EEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE
T ss_pred ceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEc
Confidence 3344444433321110 0 001122
Q ss_pred --------------------------eEEEEeCCCCEEEEEEcCCeEEEEECCCCeE----EEE--Ee-----CCCCCEE
Q 003177 691 --------------------------TQMRFQPRLGRILAAAIENYISILDVETQVC----RLK--LQ-----GHKNQVH 733 (842)
Q Consensus 691 --------------------------~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~----~~~--l~-----~h~~~V~ 733 (842)
..++|+|+++.+++++.|+.|++||+.++.. ... +. +|...|.
T Consensus 413 ~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~ 492 (902)
T 2oaj_A 413 PNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVD 492 (902)
T ss_dssp EHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEE
T ss_pred CHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCcee
Confidence 2345578889999999999999999987632 111 11 7889999
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCC------------------------------------------ceeEEEee
Q 003177 734 SVCWNTSGEYLASVS-DELVRVWSIGSGSK------------------------------------------GECIHELS 770 (842)
Q Consensus 734 sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~------------------------------------------~~~i~~~~ 770 (842)
+++|+||+++|++++ |++|+|||+.++.. ..++..+.
T Consensus 493 svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 572 (902)
T 2oaj_A 493 KISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH 572 (902)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE
Confidence 999999999999999 99999999976521 13467788
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE------E-ccCCCCeeEEEEe-----CCC---CEEEEEeCC
Q 003177 771 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT------L-SAHDKLVSSLAAS-----TVN---GMVASASHD 835 (842)
Q Consensus 771 ~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~------~-~~h~~~V~sla~s-----pdg---~~Lasgs~D 835 (842)
.|...|++++|+|+| +|++++.|++|+|||+.+..++. + .+|.+.|++|+|+ ||| .+|++|+.|
T Consensus 573 ~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D 651 (902)
T 2oaj_A 573 ANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM 651 (902)
T ss_dssp CCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT
T ss_pred cCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecC
Confidence 899999999999999 99999999999999998887752 2 2789999999999 886 799999999
Q ss_pred CcEEEcC
Q 003177 836 KCVKIWK 842 (842)
Q Consensus 836 G~V~IWd 842 (842)
|+|++||
T Consensus 652 ~tv~~wd 658 (902)
T 2oaj_A 652 GEVITYK 658 (902)
T ss_dssp SEEEEEE
T ss_pred CcEEEEE
Confidence 9999996
No 83
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-31 Score=303.84 Aligned_cols=272 Identities=25% Similarity=0.466 Sum_probs=242.7
Q ss_pred EEEEecCCCCCe-EEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 552 EFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 552 ~i~~l~gH~~~V-~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
....+.+|.+.| .|+ ++++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +.+|++++.||+|++||
T Consensus 110 ~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred eeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 356788999876 554 4468999999999999999999999999999999999999997 56999999999999999
Q ss_pred cCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCC
Q 003177 631 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN 709 (842)
Q Consensus 631 l~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg 709 (842)
+.++. .+..+.+|...|.+++|++ ..+++++.||.|++||+.+++++..+.. ...+.++.+ ++..+++++.|+
T Consensus 186 ~~~~~-~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 186 AETGE-CIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp TTTTE-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred CCcCc-EEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence 99865 5788889999999999974 3688999999999999999998888764 567888888 678999999999
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003177 710 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 788 (842)
Q Consensus 710 ~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L 788 (842)
.|++||+++++++..+.+|...|.+++| ++.++++++ |+.|++||++++ .++..+..|...+.++.++ +.+|
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~l 332 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DNIL 332 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TTEE
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEEe--CCEE
Confidence 9999999999999999999999999999 788999998 999999999988 7888888898889888775 5699
Q ss_pred EEEEcCCeEEEEECCCCeEE-EEcc---CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 789 LVIGCYETLELWNMTENKTL-TLSA---HDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 789 ~sgs~dg~I~Iwdl~~~~~~-~~~~---h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++++.|+.|++||+.+++.+ .+.. |...|++++|+ +++|++|+.||.|+|||
T Consensus 333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 99999999999999998877 4444 88999999995 68999999999999996
No 84
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.8e-33 Score=302.52 Aligned_cols=249 Identities=20% Similarity=0.271 Sum_probs=205.9
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCe--EEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 003177 555 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 630 (842)
Q Consensus 555 ~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~--~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWD 630 (842)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|...|++++|++ ++.+|++|+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 467999999999999999999999999999999998775 4678899999999999986 489999999999999999
Q ss_pred cCCCC-ceeeEeecCccceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCcee---eEE-eecCCeeEEEEeCC------
Q 003177 631 TENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVF-KCQSGATQMRFQPR------ 698 (842)
Q Consensus 631 l~t~~-~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~i---~~~-~~~~~i~~v~~sp~------ 698 (842)
+.++. .....+.+|...|.+++|+|++ ..+|++++.|+.|++||++.+... ..+ .+...+.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 98764 3456778899999999999983 457889999999999999876322 222 23456889999987
Q ss_pred -----------CCEEEEEEcCCeEEEEECCCC---eEEEEEeCCCCCEEEEEEcCCC----CEEEEEe-CCeEEEEEcCC
Q 003177 699 -----------LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGS 759 (842)
Q Consensus 699 -----------g~~l~~~s~dg~I~IwDl~t~---~~~~~l~~h~~~V~sl~~spdg----~~Lasgs-Dg~I~IwDl~s 759 (842)
+.+|++++.|+.|++||++.. .++..+.+|...|.+++|+|++ .+|++++ |++|+|||+.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 368999999999999999855 5677888999999999999986 7899999 99999999986
Q ss_pred CCCc-eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 760 GSKG-ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 760 ~~~~-~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
.... .....+..|...|.+++|+|++.+|++++.|+.|+||+..
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 3211 1222345678899999999999999999999999999975
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.1e-32 Score=292.87 Aligned_cols=247 Identities=19% Similarity=0.359 Sum_probs=210.6
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-CceeeEeecCccceEEEEEcCC-CCcEEEEEeCCCcEEEE
Q 003177 596 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-DYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYW 673 (842)
Q Consensus 596 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~-~~~i~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vw 673 (842)
..+.+|...|++++|+|++++|++|+.|++|+|||+... ...+..+.+|...|.+++|+++ ...+|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 457789999999999999999999999999999999753 2456788999999999999864 24588899999999999
Q ss_pred ECCCCc--eeeEEe-ecCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCCe--EEEEEeCCCCCEEEEEEcCC------
Q 003177 674 SINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTS------ 740 (842)
Q Consensus 674 Dl~t~~--~i~~~~-~~~~i~~v~~sp~--g~~l~~~s~dg~I~IwDl~t~~--~~~~l~~h~~~V~sl~~spd------ 740 (842)
|+++++ .+..+. +...|.+++|+|+ +..|++++.|+.|++||++++. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 999874 334443 4567999999997 7899999999999999998753 24567789999999999997
Q ss_pred -------CCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCe--
Q 003177 741 -------GEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK-- 806 (842)
Q Consensus 741 -------g~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~~spdg---~~L~sgs~dg~I~Iwdl~~~~-- 806 (842)
+.+|++++ |+.|+|||++++.. ......+.+|...|.+++|+|++ .+|++++.|++|+|||+.+..
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 57899998 99999999987632 12566788999999999999985 789999999999999997742
Q ss_pred --EEEE--ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 807 --TLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 807 --~~~~--~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
...+ ..|...|.+++|+|++++||+++.||.|+||+
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 1223 46888999999999999999999999999995
No 86
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.2e-32 Score=297.22 Aligned_cols=289 Identities=17% Similarity=0.230 Sum_probs=237.5
Q ss_pred CCCeeEEEEecCCCCcccccCCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEe--cCCCC
Q 003177 484 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI--PASTS 561 (842)
Q Consensus 484 s~~~s~~~~~~~~~~~~~~~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l--~gH~~ 561 (842)
......+.|+++. .+.+..+++++.++.|++|..... .....+..+ ..|..
T Consensus 18 ~~~v~~i~~~p~~-----------~~~~~~~~~~~~~~~v~vw~~~~~----------------~~~~~~~~~~~~~~~~ 70 (366)
T 3k26_A 18 NQPLFGVQFNWHS-----------KEGDPLVFATVGSNRVTLYECHSQ----------------GEIRLLQSYVDADADE 70 (366)
T ss_dssp CSCEEEEEECTTC-----------CTTSCEEEEEEETTEEEEEEECGG----------------GCEEEEEEEECSCTTC
T ss_pred CCceEEEEEeccc-----------CCCCceEEEECCCCEEEEEEcCCC----------------cEEEeeeeccccCCCC
Confidence 3456666777642 122344555566679999966432 111222222 24889
Q ss_pred CeEEEEEcCC----CCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc
Q 003177 562 KVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY 636 (842)
Q Consensus 562 ~V~sv~fSpd----g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~t~~~ 636 (842)
.|++++|+|+ +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.++.
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~- 149 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT- 149 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-
T ss_pred cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-
Confidence 9999999998 67999999999999999999999999999999999999999 89999999999999999999765
Q ss_pred eeeEe---ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe----------------------------
Q 003177 637 SLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------------------------- 685 (842)
Q Consensus 637 ~i~~~---~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---------------------------- 685 (842)
.+..+ .+|...|.+++|+|++. +|++++.||.|++||+++++....+.
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 150 LVAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp EEEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred EEEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 35555 68999999999999876 66688999999999999876554332
Q ss_pred -ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC--------------eEEEEEeCCCCCEEEEEEcCC--CCEEEEEe
Q 003177 686 -CQSGATQMRFQPRLGRILAAAIENYISILDVETQ--------------VCRLKLQGHKNQVHSVCWNTS--GEYLASVS 748 (842)
Q Consensus 686 -~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~--------------~~~~~l~~h~~~V~sl~~spd--g~~Lasgs 748 (842)
+...|.+++|+ +.++++++.|+.|++||+++. ..+..+..|...|.+++|+|+ +.+|++++
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~ 306 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN 306 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence 56779999999 679999999999999999876 347788899999999999999 99999999
Q ss_pred -CCeEEEEEcCCCCCce-eEEEeecC--CCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 749 -DELVRVWSIGSGSKGE-CIHELSCT--GNKFHSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 749 -Dg~I~IwDl~s~~~~~-~i~~~~~~--~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
|+.|++||+.++.... .+..+..| ...|.+++|+|++.+|++++.|+.|++||+.
T Consensus 307 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 307 QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999875433 55566666 7899999999999999999999999999985
No 87
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-31 Score=284.22 Aligned_cols=266 Identities=16% Similarity=0.208 Sum_probs=230.8
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~ 590 (842)
+.++++|+.|+.|++|..... .....+..|.+.|.+++|+|++++|++++.||.|++|++.
T Consensus 29 ~~~l~s~~~dg~v~vw~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 89 (313)
T 3odt_A 29 DSKVASVSRDGTVRLWSKDDQ-------------------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF 89 (313)
T ss_dssp TTEEEEEETTSEEEEEEESSS-------------------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred CCEEEEEEcCCcEEEEECCCC-------------------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence 467899999999999965322 2356677899999999999999999999999999999986
Q ss_pred CC---eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC
Q 003177 591 SF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 667 (842)
Q Consensus 591 t~---~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 667 (842)
.. +.+..+..|...|.+++| ++.+|++++.||.|++|| .......+..|...|.+++|+|....++++++.|
T Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 90 ATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp CCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred ecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence 53 567788899999999999 677999999999999999 2345778888999999999998445578899999
Q ss_pred CcEEEEECCCCceeeEEe--ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEE
Q 003177 668 SEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 745 (842)
Q Consensus 668 g~I~vwDl~t~~~i~~~~--~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~La 745 (842)
|.|++||. .+....+. +...+.+++|+|++. +++++.|+.|++||+++++.+..+..|...|++++|+|++. |+
T Consensus 165 ~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~ 240 (313)
T 3odt_A 165 KTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IV 240 (313)
T ss_dssp SCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EE
T ss_pred CCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EE
Confidence 99999994 44555554 567799999999977 99999999999999999999999999999999999999995 55
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 746 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 746 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
+++ |+.|++||+.++ ..+..+..+...|.+++|+|++. +++++.|+.|++||+.+++.+
T Consensus 241 ~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 241 SCGEDRTVRIWSKENG---SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EEETTSEEEEECTTTC---CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred EEecCCEEEEEECCCC---ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 666 999999999988 67888888999999999999998 778999999999999988765
No 88
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6e-31 Score=297.77 Aligned_cols=272 Identities=19% Similarity=0.302 Sum_probs=233.1
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 591 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t 591 (842)
+++++| .|++|++|+.... . ......+.+|...|+||+|+|+|++||+|+.||.|+|||+.+
T Consensus 117 n~lAvg-ld~tV~lWd~~tg----------------~-~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~ 178 (420)
T 4gga_A 117 NVLAVA-LDNSVYLWSASSG----------------D-ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 178 (420)
T ss_dssp SEEEEE-ETTEEEEEETTTC----------------C-EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CEEEEE-eCCEEEEEECCCC----------------C-EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC
Confidence 567776 5899999965432 1 122344568899999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEE
Q 003177 592 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 671 (842)
Q Consensus 592 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 671 (842)
++.+..+.+|...|.++.|+ +.+|++|+.|+.+++||.......+..+.+|...+.++.|+|++. ++++++.|+.|+
T Consensus 179 ~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~ 255 (420)
T 4gga_A 179 QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVN 255 (420)
T ss_dssp TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccce
Confidence 99999999999999999885 679999999999999999988877889999999999999999977 667999999999
Q ss_pred EEECCCCcee----e-EEeecCCeeEEEEeCCCCEEE-EEE--cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 003177 672 YWSINNGSCA----G-VFKCQSGATQMRFQPRLGRIL-AAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 743 (842)
Q Consensus 672 vwDl~t~~~i----~-~~~~~~~i~~v~~sp~g~~l~-~~s--~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~ 743 (842)
+|++.+++.. . ...+...|.+++|+|.+..++ +++ .|+.|++||+.++.+...+..| ..+.++.|++++..
T Consensus 256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKE 334 (420)
T ss_dssp EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTE
T ss_pred EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCe
Confidence 9999876532 2 223466799999999766544 433 5899999999999999888854 57899999999998
Q ss_pred EEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 744 LASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 744 Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
+++++ |+.|+|||+.++ .++..+.+|...|++++|+|+|.+|++++.|++|+|||+.+....
T Consensus 335 lv~~sg~~d~~I~iwd~~~~---~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp EEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred EEEEEecCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 88764 889999999988 788999999999999999999999999999999999999775543
No 89
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=295.44 Aligned_cols=251 Identities=21% Similarity=0.308 Sum_probs=217.4
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC--CCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEE
Q 003177 553 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 628 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~--t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~I 628 (842)
+..+.+|.+.|++++|+|++++||+|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 45678999999999999999999999999999999998 66777889999999999999987 999999999999999
Q ss_pred EEcCCCCc-eeeEeecCccceEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCceee---EEeecCCeeEEEEeC-----
Q 003177 629 WDTENPDY-SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAG---VFKCQSGATQMRFQP----- 697 (842)
Q Consensus 629 WDl~t~~~-~i~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~i~---~~~~~~~i~~v~~sp----- 697 (842)
||+.++.. .+..+..|...|.+++|+|+ +. +|++++.|+.|++||++++.... ...+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99998652 46677889999999999998 55 77799999999999999874332 223567799999999
Q ss_pred --------CCCEEEEEEcCCeEEEEECCCC----eEEEEEeCCCCCEEEEEEcCC---CCEEEEEe-CCeEEEEEcCCCC
Q 003177 698 --------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGS 761 (842)
Q Consensus 698 --------~g~~l~~~s~dg~I~IwDl~t~----~~~~~l~~h~~~V~sl~~spd---g~~Lasgs-Dg~I~IwDl~s~~ 761 (842)
++..+++++.|+.|++||++++ .....+.+|...|.+++|+|+ +.+|++++ |+.|+|||++++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 6899999999999999999865 355678889999999999999 89999999 9999999999864
Q ss_pred CceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 762 KGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 762 ~~~~i~~~--~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
.......+ ..+...|.+++|+|++.+|++++.|+.|++|++..
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred ccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 32233333 33778899999999999999999999999999873
No 90
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.3e-31 Score=298.09 Aligned_cols=267 Identities=15% Similarity=0.166 Sum_probs=222.5
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEecC
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSp-dg~~Lasgs~Dg~I~vwd~~ 590 (842)
.++++|+.|+.|++|...... ......+.+|.+.|.+++|+| ++.+|++++.|+.|++||+.
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQN-----------------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTT-----------------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred CEEEEEcCCCeEEEEeCCCcc-----------------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence 689999999999999765331 111223357999999999999 78999999999999999998
Q ss_pred CCeEEEEecc---CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC
Q 003177 591 SFTVKSTLEE---HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 667 (842)
Q Consensus 591 t~~~~~~l~~---h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 667 (842)
+ ..+..+.. |...|.+++|+|++.+|++++.|+.|++||++ ...+..+.+|...|.+++|+|++..+|++++.|
T Consensus 150 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 226 (383)
T 3ei3_B 150 G-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226 (383)
T ss_dssp S-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred C-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence 6 45555543 44889999999999999999999999999995 345788889999999999999988788899999
Q ss_pred CcEEEEECCC----CceeeEEeecCCeeEEEEeC-CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-------------
Q 003177 668 SEIRYWSINN----GSCAGVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHK------------- 729 (842)
Q Consensus 668 g~I~vwDl~t----~~~i~~~~~~~~i~~v~~sp-~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~------------- 729 (842)
+.|++||+++ +.++..+.+...|.+++|+| ++.+|++++.|+.|++||+++++....+..|.
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (383)
T 3ei3_B 227 ATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT 306 (383)
T ss_dssp SEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred CEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence 9999999998 67788888888999999999 99999999999999999999876655555442
Q ss_pred ----CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 730 ----NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNM 802 (842)
Q Consensus 730 ----~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl 802 (842)
..+..++|+|++++ +++ |+.|+|||+.++ .++..+.. +...+..++|+|++.+|++++ |+.|+|||+
T Consensus 307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~---~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG---GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC---CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC---ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 33445666666666 444 999999999988 67777776 456778889999999999996 999999998
Q ss_pred CC
Q 003177 803 TE 804 (842)
Q Consensus 803 ~~ 804 (842)
++
T Consensus 381 ~~ 382 (383)
T 3ei3_B 381 ED 382 (383)
T ss_dssp C-
T ss_pred CC
Confidence 75
No 91
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6e-32 Score=303.55 Aligned_cols=278 Identities=14% Similarity=0.227 Sum_probs=235.4
Q ss_pred CeEEEEEcCCCCEE-EEEECCCcEEEEecCCCe----EEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCC
Q 003177 562 KVESCHFSPDGKLL-ATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD 635 (842)
Q Consensus 562 ~V~sv~fSpdg~~L-asgs~Dg~I~vwd~~t~~----~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~t~~ 635 (842)
....++++|+...+ ++++.||.|+||++.... .+..+.+|...|++++|+| ++.+|++++.||+|+|||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 45568899876544 457889999999986543 2345678999999999999 89999999999999999998763
Q ss_pred ------ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEE--e-ecCCeeEEEEeCCCCEEEEEE
Q 003177 636 ------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--K-CQSGATQMRFQPRLGRILAAA 706 (842)
Q Consensus 636 ------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~--~-~~~~i~~v~~sp~g~~l~~~s 706 (842)
..+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++++..+ . +...|.+++|+|++..|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 3567888999999999999998778999999999999999999998888 3 567799999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEE-eCCCCC-EEEEEEcCCCCEEEEE---e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003177 707 IENYISILDVETQVCRLKL-QGHKNQ-VHSVCWNTSGEYLASV---S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 780 (842)
Q Consensus 707 ~dg~I~IwDl~t~~~~~~l-~~h~~~-V~sl~~spdg~~Lasg---s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 780 (842)
.|+.|++||+++++.+..+ ..|.+. +.+++|+|++.+|+++ + |+.|++||+++......... ..+...+.+++
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~ 274 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-LDTSSGVLLPF 274 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-CCCCSSCEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe-ccCCCceeEEE
Confidence 9999999999999999988 678776 8999999999999998 5 99999999998753222222 24567899999
Q ss_pred EeCCCCEEEEEE-cCCeEEEEECCCCe--EEEE--ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 781 FHPTFPSLLVIG-CYETLELWNMTENK--TLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 781 ~spdg~~L~sgs-~dg~I~Iwdl~~~~--~~~~--~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
|+|++.+|++++ .|+.|++||+.+++ ...+ ..|...|.+++|+|++.++++ .|+.+++|+
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 999999997665 69999999999887 3333 346699999999999988764 567899985
No 92
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.2e-30 Score=287.94 Aligned_cols=314 Identities=15% Similarity=0.256 Sum_probs=227.1
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEE-----EecCCCCCeEEEEEcC-CCCEEEEEECCCcE
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ-----LIPASTSKVESCHFSP-DGKLLATGGHDKKA 584 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~-----~l~gH~~~V~sv~fSp-dg~~Lasgs~Dg~I 584 (842)
..++++|+.|+.|++|........... ...... ...+|...|.+++|+| ++.+|++++.||.|
T Consensus 56 ~~~l~~~~~dg~i~iw~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 124 (408)
T 4a11_B 56 GRYMLSGGSDGVIVLYDLENSSRQSYY-----------TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL 124 (408)
T ss_dssp CCEEEEEETTSCEEEEECCCCSSSSCE-----------EECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcccceE-----------eccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeE
Confidence 378999999999999977654322111 111111 1246999999999999 78899999999999
Q ss_pred EEEecCCCeEEEEeccCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEE
Q 003177 585 VLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 661 (842)
Q Consensus 585 ~vwd~~t~~~~~~l~~h~~~I~~l~fspd---g~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~ll 661 (842)
++||+.+++.+..+. +...+.++.|++. +.+|++++.|+.|++||+.++. .+..+..|...|.+++|+|++..++
T Consensus 125 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ll 202 (408)
T 4a11_B 125 KVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-CSHILQGHRQEILAVSWSPRYDYIL 202 (408)
T ss_dssp EEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-CCEEECCCCSCEEEEEECSSCTTEE
T ss_pred EEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-eeeeecCCCCcEEEEEECCCCCcEE
Confidence 999999999888875 7788999999984 4599999999999999999765 4778888999999999999999889
Q ss_pred EEEeCCCcEEEEECCCCc-eeeEE----------------eecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003177 662 CSCDNNSEIRYWSINNGS-CAGVF----------------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 724 (842)
Q Consensus 662 asgs~Dg~I~vwDl~t~~-~i~~~----------------~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~ 724 (842)
++++.||.|++||++++. ++..+ .+...|.+++|+|++.++++++.|+.|++||+++++....
T Consensus 203 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 282 (408)
T 4a11_B 203 ATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLV 282 (408)
T ss_dssp EEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCC
T ss_pred EEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcccee
Confidence 899999999999998765 33333 2456799999999999999999999999999998876544
Q ss_pred EeCCC------CCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003177 725 LQGHK------NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 798 (842)
Q Consensus 725 l~~h~------~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~ 798 (842)
+..+. .....+.......+++++.|+.|++||+.++ ..+..+..|...|.+++|+|++.+|++++.||.|+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 359 (408)
T 4a11_B 283 NYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL 359 (408)
T ss_dssp CCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEE
Confidence 43221 1222233334555666666999999999987 78888999999999999999999999999999999
Q ss_pred EEECCCCeEEEEccCCCCeeEEEEeC-CCCEEEEEeCCCcEEEcC
Q 003177 799 LWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 842 (842)
Q Consensus 799 Iwdl~~~~~~~~~~h~~~V~sla~sp-dg~~Lasgs~DG~V~IWd 842 (842)
+||+.+++.+......... ..+.+ ....+.+++.|+.|++|+
T Consensus 360 iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 360 AWVPSLYEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp EEEECC---------------------------------------
T ss_pred EEeCCCCCccCCCCceEec--cccccccceeecccCccCceeecC
Confidence 9999998877432222222 22333 334566778899999995
No 93
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-32 Score=301.74 Aligned_cols=279 Identities=14% Similarity=0.163 Sum_probs=219.9
Q ss_pred cccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 003177 506 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 585 (842)
Q Consensus 506 ~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~ 585 (842)
.+.....++++|+.|+.|++|..... .+..+..+.+|.+.|++++|+|++++|++++.|+.|+
T Consensus 18 ~~s~~g~~l~~~~~d~~i~iw~~~~~-----------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~ 80 (377)
T 3dwl_C 18 AFNSQRTEFVTTTATNQVELYEQDGN-----------------GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAY 80 (377)
T ss_dssp EECSSSSEEECCCSSSCBCEEEEETT-----------------EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEE
T ss_pred EECCCCCEEEEecCCCEEEEEEccCC-----------------ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEE
Confidence 34445578999999999999965422 1234566789999999999999999999999999999
Q ss_pred EEecCCCe---EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeeEeec-CccceEEEEEcCCCCc
Q 003177 586 LWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTG-HSTTVMSLDFHPSKED 659 (842)
Q Consensus 586 vwd~~t~~---~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~--~i~~~~~-h~~~V~sl~fspdg~~ 659 (842)
|||+.+++ ....+..|...|.+++|+|++++|++++.|+.|++||++++.. ....+.. |...|.+++|+|++.
T Consensus 81 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~- 159 (377)
T 3dwl_C 81 VYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV- 159 (377)
T ss_dssp EC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-
T ss_pred EEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-
Confidence 99999876 6677889999999999999999999999999999999987652 3566666 999999999999976
Q ss_pred EEEEEeCCCcEEEEECC------------------CCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 003177 660 LLCSCDNNSEIRYWSIN------------------NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 721 (842)
Q Consensus 660 llasgs~Dg~I~vwDl~------------------t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~ 721 (842)
+|++++.|+.|++||+. .++++..+.+...|.+++|+|++.+|++++.|+.|++||+++++.
T Consensus 160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 67799999999999985 244555555567799999999999999999999999999998876
Q ss_pred ----EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC---------------------------ceeE----
Q 003177 722 ----RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK---------------------------GECI---- 766 (842)
Q Consensus 722 ----~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~---------------------------~~~i---- 766 (842)
+..+.+|...|.+++|+|++.+|++++++.+.+|+...... ...+
T Consensus 240 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (377)
T 3dwl_C 240 PPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTA 319 (377)
T ss_dssp CEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--------
T ss_pred cceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeeccccccccccccccccccccccccccccc
Confidence 77888999999999999999999999977677887762210 0000
Q ss_pred --EE----------------eecCCCceEEEEEeCCCC----EEEEEEcCCeEEEEEC
Q 003177 767 --HE----------------LSCTGNKFHSCVFHPTFP----SLLVIGCYETLELWNM 802 (842)
Q Consensus 767 --~~----------------~~~~~~~I~sv~~spdg~----~L~sgs~dg~I~Iwdl 802 (842)
.. ...|...|+++.+.+... .|++++.||.|+|||+
T Consensus 320 ~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 320 LRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 01 112788999999766543 5999999999999985
No 94
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.8e-32 Score=297.06 Aligned_cols=246 Identities=19% Similarity=0.325 Sum_probs=204.8
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-eeeEeecCccceEEEEEcCC-CCcEEEEEeCCCcEEEEE
Q 003177 597 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWS 674 (842)
Q Consensus 597 ~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~-~i~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vwD 674 (842)
.+.+|.+.|++++|+|++++|++|+.|++|+|||+.++.. .+..+.+|...|.+++|+++ ...+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 4568999999999999999999999999999999987643 46778899999999999863 244778999999999999
Q ss_pred CCCCc--eeeEEe-ecCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCCe---EEEEEeCCCCCEEEEEEcCC------
Q 003177 675 INNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTS------ 740 (842)
Q Consensus 675 l~t~~--~i~~~~-~~~~i~~v~~sp~--g~~l~~~s~dg~I~IwDl~t~~---~~~~l~~h~~~V~sl~~spd------ 740 (842)
+++++ .+..+. +...|.+++|+|+ +.+|++++.|+.|++||++.+. ....+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 99874 444443 4567999999998 7789999999999999998752 23455679999999999997
Q ss_pred -----------CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCC
Q 003177 741 -----------GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 741 -----------g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg----~~L~sgs~dg~I~Iwdl~~ 804 (842)
+.+|++++ |+.|+|||++......++..+..|...|.+++|+|++ .+|++++.|++|+|||+.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 46888888 9999999997654335677888999999999999987 7899999999999999876
Q ss_pred C---e--EEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 805 N---K--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 805 ~---~--~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
. . ...+..|...|.+++|+|++++||+++.||.|+||+
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 2 1 124567899999999999999999999999999996
No 95
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.4e-30 Score=294.02 Aligned_cols=285 Identities=9% Similarity=0.043 Sum_probs=244.9
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEE-----EeccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003177 551 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSPSLSRLATSSADRT 625 (842)
Q Consensus 551 ~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~-----~l~~h~~~I~~l~fspdg~~Latgs~Dg~ 625 (842)
..+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++.+. .+.+|...|.+++|++++.++++++.|+.
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 4455565554 46699999988788888889999999999998887 34578899999999999999999999999
Q ss_pred EEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEE
Q 003177 626 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 705 (842)
Q Consensus 626 I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~ 705 (842)
|++||++++. .+..+..|...+.+++|+|++..++++++.|+.|++||+++++.+..+.....+.+++|+|+++.++++
T Consensus 193 v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 193 VHVFDLKTLA-YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTCC-EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCce-EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEE
Confidence 9999998765 467777889999999999999988888878999999999999998888887789999999999999998
Q ss_pred E--------cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE-e-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003177 706 A--------IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGECIHELSCTGNK 775 (842)
Q Consensus 706 s--------~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasg-s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 775 (842)
+ .|+.|++||+++++.+..+. |...+.+++|+|++++++++ + |+.|++||+.++ +.+..+. +...
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---~~~~~~~-~~~~ 346 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---KVQKSIP-VFDK 346 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSS
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---cEEEEec-CCCC
Confidence 8 47899999999998777663 56689999999999866554 5 999999999876 5555554 5678
Q ss_pred eEEEEEeCCCCEEEEEEc---------------CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeC-CCcEE
Q 003177 776 FHSCVFHPTFPSLLVIGC---------------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-DKCVK 839 (842)
Q Consensus 776 I~sv~~spdg~~L~sgs~---------------dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~-DG~V~ 839 (842)
+.+++|+|++++|++++. ||.|++||+.+++.+....+...+.+++|+|++++|++++. |+.|+
T Consensus 347 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~ 426 (433)
T 3bws_A 347 PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIR 426 (433)
T ss_dssp EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEE
T ss_pred CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEE
Confidence 999999999999998887 46999999999998865556678999999999999988875 99999
Q ss_pred EcC
Q 003177 840 IWK 842 (842)
Q Consensus 840 IWd 842 (842)
||+
T Consensus 427 v~~ 429 (433)
T 3bws_A 427 VYR 429 (433)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 96
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.6e-31 Score=302.39 Aligned_cols=274 Identities=15% Similarity=0.205 Sum_probs=219.8
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEec
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSp-dg~~Lasgs~Dg~I~vwd~ 589 (842)
+.++++|+.|++|++|+...... ..+..+.+|.+.|++|+|+| ++.+|++|+.||+|+|||+
T Consensus 132 ~~~lasGs~dg~i~lWd~~~~~~-----------------~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 132 PSTVAVGSKGGDIMLWNFGIKDK-----------------PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp TTCEEEEETTSCEEEECSSCCSC-----------------CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCEEEEEeCCCEEEEEECCCCCc-----------------eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 36899999999999996543211 12345678999999999998 7899999999999999999
Q ss_pred CCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC
Q 003177 590 ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 667 (842)
Q Consensus 590 ~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 667 (842)
++......... +...+.+++|++++.+|++|+.||.|++||++.. .+..+.+|...|.+++|+|++..+|++++.|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 87655444433 3456789999999999999999999999999753 4677889999999999999999999999999
Q ss_pred CcEEEEECCCCceeeEE----eecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC------CEEEEEE
Q 003177 668 SEIRYWSINNGSCAGVF----KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN------QVHSVCW 737 (842)
Q Consensus 668 g~I~vwDl~t~~~i~~~----~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~------~V~sl~~ 737 (842)
+.|++||+++.+....+ .+...|.+++|+|++.+|++++.|+.|+|||+.++.+...+..|.. .+..+.|
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 352 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEE
Confidence 99999999887654433 3467799999999999999999999999999999888777766543 2334567
Q ss_pred cCCCCEEEEEe-------------CCeEEEEEcCCCCCceeEEEe-ecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEEC
Q 003177 738 NTSGEYLASVS-------------DELVRVWSIGSGSKGECIHEL-SCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNM 802 (842)
Q Consensus 738 spdg~~Lasgs-------------Dg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv-~~spdg~~L~sgs~dg~I~Iwdl 802 (842)
+|++.+++++. ++.|++||+.++ ..+..+ ..|...|.++ +|+|+|.+|++++ |+.|+|||+
T Consensus 353 ~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 353 HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---KMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---CEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---cEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 77777776653 247999999988 555554 4567778777 6999999887764 889999999
Q ss_pred CCCeE
Q 003177 803 TENKT 807 (842)
Q Consensus 803 ~~~~~ 807 (842)
++++.
T Consensus 429 ~~gk~ 433 (435)
T 4e54_B 429 QEART 433 (435)
T ss_dssp C----
T ss_pred CcCee
Confidence 98865
No 97
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-31 Score=288.36 Aligned_cols=250 Identities=20% Similarity=0.363 Sum_probs=214.4
Q ss_pred eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ceeeEeecCccceEEEEEcCCC-CcEEEEEeCCCcE
Q 003177 593 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEI 670 (842)
Q Consensus 593 ~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~-~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I 670 (842)
+.+..+.+|...|++++|+|++++|++++.||.|+|||+.... ..+..+.+|...|++++|+++. ..+|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4566788999999999999999999999999999999998432 3456788999999999998762 3477899999999
Q ss_pred EEEECCCCc--eeeEEe-ecCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCC--eEEEEEeCCCCCEEEEEEcC----
Q 003177 671 RYWSINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT---- 739 (842)
Q Consensus 671 ~vwDl~t~~--~i~~~~-~~~~i~~v~~sp~--g~~l~~~s~dg~I~IwDl~t~--~~~~~l~~h~~~V~sl~~sp---- 739 (842)
++||+.+++ .+..+. +...|.+++|+|+ +..+++++.|+.|++||+++. .....+..|...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999986 444444 4677999999999 899999999999999999987 44556778999999999999
Q ss_pred ---------CCCEEEEEe-CCeEEEEEcCCCCCc-eeEEEeecCCCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCC
Q 003177 740 ---------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTEN 805 (842)
Q Consensus 740 ---------dg~~Lasgs-Dg~I~IwDl~s~~~~-~~i~~~~~~~~~I~sv~~spd---g~~L~sgs~dg~I~Iwdl~~~ 805 (842)
++.+|++++ |+.|++||++++... ..+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 699999999 999999999876432 356678889999999999999 899999999999999999887
Q ss_pred e----EE--EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 806 K----TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 806 ~----~~--~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
. .. ....|...|++++|+|++++|++++.||.|+|||
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 3 22 2334889999999999999999999999999996
No 98
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=1.8e-29 Score=271.42 Aligned_cols=270 Identities=19% Similarity=0.292 Sum_probs=228.1
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 591 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t 591 (842)
+++++| .|++|++|+.... .. .....+.+|...|++++|+|++++||+|+.||+|+|||+.+
T Consensus 37 ~~lAvg-~D~tV~iWd~~tg----------------~~-~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~ 98 (318)
T 4ggc_A 37 NVLAVA-LDNSVYLWSASSG----------------DI-LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 98 (318)
T ss_dssp SEEEEE-ETTEEEEEETTTC----------------CE-EEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CEEEEE-eCCEEEEEECCCC----------------CE-EEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC
Confidence 366766 5899999965432 11 12234568899999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEE
Q 003177 592 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 671 (842)
Q Consensus 592 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 671 (842)
++.+..+.+|...+.++.+ ++..+++++.++.+++|+.......+..+.+|...+.++.|++++. ++++++.|+.|+
T Consensus 99 ~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~ 175 (318)
T 4ggc_A 99 QKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVN 175 (318)
T ss_dssp TEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred ceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCccee
Confidence 9999999999999888766 4679999999999999999988888888999999999999999977 666999999999
Q ss_pred EEECCCCceee-----EEeecCCeeEEEEeCCCCEEE---EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 003177 672 YWSINNGSCAG-----VFKCQSGATQMRFQPRLGRIL---AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 743 (842)
Q Consensus 672 vwDl~t~~~i~-----~~~~~~~i~~v~~sp~g~~l~---~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~ 743 (842)
+||+++++... .......+.++.+++.+..++ +++.++.|++||.+......... +...+..++|++++..
T Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 254 (318)
T 4ggc_A 176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKE 254 (318)
T ss_dssp EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTE
T ss_pred EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccc
Confidence 99998875432 222356789999999776544 33457899999999987776655 6778999999999998
Q ss_pred EEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003177 744 LASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 806 (842)
Q Consensus 744 Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~ 806 (842)
+++++ |+.|+|||++++ +++..+.+|...|++++|+|++.+|++++.|++|+|||+.+..
T Consensus 255 ~~~~sg~~d~~i~iwd~~~~---~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 255 LISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred eEEEEEcCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 87754 889999999988 7889999999999999999999999999999999999987653
No 99
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=4.8e-30 Score=291.58 Aligned_cols=281 Identities=18% Similarity=0.365 Sum_probs=227.8
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~ 590 (842)
+.++++|+.|+.|++|+.... ..+..+.+|.+.|.+++| ++++|++|+.||.|++||+.
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNTL-------------------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSC-------------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred CCEEEEEeCCCeEEEEeCCCC-------------------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 478899999999999965322 235678899999999999 78899999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce--eeEeecCccceEEEEEcCCCCcEEEEEeCCC
Q 003177 591 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 668 (842)
Q Consensus 591 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~--i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 668 (842)
+++.+..+.+|...|.+++|++ .+|++++.||.|++||+.++... ...+.+|...|.+++|. + .++++++.||
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg 276 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--D-KYIVSASGDR 276 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--T-TEEEEEETTS
T ss_pred CCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--C-CEEEEEeCCC
Confidence 9999999999999999999974 59999999999999999876542 26778899999999994 3 4778999999
Q ss_pred cEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003177 669 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 747 (842)
Q Consensus 669 ~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasg 747 (842)
.|++||+++++++..+.. ...+.++.++ +..+++++.||.|++||+++++++..+.+|...|.+++| ++.+|+++
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred eEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 999999999999988874 5668888884 679999999999999999999999999999999999999 78899999
Q ss_pred e-CCeEEEEEcCCCCC------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEE
Q 003177 748 S-DELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSL 820 (842)
Q Consensus 748 s-Dg~I~IwDl~s~~~------~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sl 820 (842)
+ ||.|++||+.++.. ..++..+..|...|.+++| ++.+|++++.||.|++||+.+...........++.++
T Consensus 353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 430 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTY 430 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------------------
T ss_pred eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccce
Confidence 9 99999999976531 1278888999999999999 6788999999999999999887766444444555555
Q ss_pred EEe
Q 003177 821 AAS 823 (842)
Q Consensus 821 a~s 823 (842)
.|.
T Consensus 431 ~~~ 433 (435)
T 1p22_A 431 TYI 433 (435)
T ss_dssp ---
T ss_pred eee
Confidence 554
No 100
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.8e-31 Score=299.58 Aligned_cols=264 Identities=15% Similarity=0.208 Sum_probs=219.2
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCCeEEEEe-ccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC---CCce-eeE
Q 003177 567 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN---PDYS-LRT 640 (842)
Q Consensus 567 ~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l-~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~t---~~~~-i~~ 640 (842)
.|+|++..+++++ +|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|+|||+.+ +... ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 3677777777654 487 556788888 89999999999999 999999999999999999876 3211 122
Q ss_pred eecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECC---CCceeeEEe-------------ecCCeeEEE--EeCCCCEE
Q 003177 641 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFK-------------CQSGATQMR--FQPRLGRI 702 (842)
Q Consensus 641 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~---t~~~i~~~~-------------~~~~i~~v~--~sp~g~~l 702 (842)
...|...|.+++|+|++. +|++++.||.|++||++ +++.+..+. ....+.++. +++++..+
T Consensus 107 ~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 107 TYDCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp EEECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred eccCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 225999999999999866 67799999999999995 555544333 233455665 55788999
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEeC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-cCCCceEE
Q 003177 703 LAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHS 778 (842)
Q Consensus 703 ~~~s~dg~I~IwDl~t~~~~~~l~~--h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-~~~~~I~s 778 (842)
++++.|+.|++||+++++++..+.. |...|++++|+|++.+|++++ |+.|++||++++ .++..+. .+...|.+
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~ 262 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPITH 262 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceEE
Confidence 9999999999999999999999988 899999999999999999999 999999999987 7777775 67778999
Q ss_pred EEEeC----CCCEEEEEEcCCeEEEEECCCCeEE-EEcc--------------------------CCCCeeEEEEeCCCC
Q 003177 779 CVFHP----TFPSLLVIGCYETLELWNMTENKTL-TLSA--------------------------HDKLVSSLAASTVNG 827 (842)
Q Consensus 779 v~~sp----dg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~--------------------------h~~~V~sla~spdg~ 827 (842)
++|+| ++.+|++++.|+.|++||+.+++.+ .+.+ |...|++++|+ +++
T Consensus 263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~ 341 (437)
T 3gre_A 263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK 341 (437)
T ss_dssp EEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred EEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence 96664 5779999999999999999998866 3322 66679999999 789
Q ss_pred EEEEEeCCCcEEEcC
Q 003177 828 MVASASHDKCVKIWK 842 (842)
Q Consensus 828 ~Lasgs~DG~V~IWd 842 (842)
+|++|+.||.|+|||
T Consensus 342 ~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 342 ILLTDEATSSIVMFS 356 (437)
T ss_dssp EEEEEGGGTEEEEEE
T ss_pred EEEecCCCCeEEEEE
Confidence 999999999999996
No 101
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=4e-30 Score=290.87 Aligned_cols=278 Identities=14% Similarity=0.262 Sum_probs=223.6
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCC------------CCeEEEEEcCCC--CEEE
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST------------SKVESCHFSPDG--KLLA 576 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~------------~~V~sv~fSpdg--~~La 576 (842)
..++++|+.|+.|++|......... ......+..+..+.+|. +.|++++|+|++ .+|+
T Consensus 40 g~~la~g~~dg~v~iw~~~~~~~~~--------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~ 111 (447)
T 3dw8_B 40 GELLATGDKGGRVVIFQQEQENKIQ--------SHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111 (447)
T ss_dssp SSEEEEEETTSEEEEEEECC-------------CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEE
T ss_pred CCEEEEEcCCCeEEEEEecCCCCCC--------cccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEE
Confidence 3789999999999999776543110 11123345677888998 889999999998 7999
Q ss_pred EEECCCcEEEEecCCCeEE---------------------------------------EE-eccCCCCeEEEEEcCCCCE
Q 003177 577 TGGHDKKAVLWCTESFTVK---------------------------------------ST-LEEHTQWITDVRFSPSLSR 616 (842)
Q Consensus 577 sgs~Dg~I~vwd~~t~~~~---------------------------------------~~-l~~h~~~I~~l~fspdg~~ 616 (842)
+++.|+.|++||+.++... .. ..+|...|++++|+|++++
T Consensus 112 s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 191 (447)
T 3dw8_B 112 LSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYET 191 (447)
T ss_dssp EEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSE
T ss_pred EeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCE
Confidence 9999999999998764432 12 3689999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCceee-------EeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce----eeEEe
Q 003177 617 LATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFK 685 (842)
Q Consensus 617 Latgs~Dg~I~IWDl~t~~~~i~-------~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~----i~~~~ 685 (842)
|++| .|+.|+|||+.+....+. .+.+|...|.+++|+|++..+|++++.||.|++||+++++. +..+.
T Consensus 192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 270 (447)
T 3dw8_B 192 YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE 270 (447)
T ss_dssp EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC
T ss_pred EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec
Confidence 9998 899999999985444343 35689999999999999856888999999999999999886 56666
Q ss_pred ecC-------------CeeEEEEeCCCCEEEEEEcCCeEEEEECCC-CeEEEEEeCCCCC---------------EEEEE
Q 003177 686 CQS-------------GATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQ---------------VHSVC 736 (842)
Q Consensus 686 ~~~-------------~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t-~~~~~~l~~h~~~---------------V~sl~ 736 (842)
.+. .|.+++|+|++.+|++++. +.|++||+++ ++++..+.+|... +..++
T Consensus 271 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 349 (447)
T 3dw8_B 271 EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECC 349 (447)
T ss_dssp CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEE
T ss_pred cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEE
Confidence 543 7999999999999999998 9999999997 7888888877532 33499
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee---------------------------------cCCCceEEEEEe
Q 003177 737 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS---------------------------------CTGNKFHSCVFH 782 (842)
Q Consensus 737 ~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~---------------------------------~~~~~I~sv~~s 782 (842)
|+|++.+|++++ |+.|+|||+.++. .+. +. .....|..++|+
T Consensus 350 ~s~~~~~l~s~s~dg~v~iwd~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 425 (447)
T 3dw8_B 350 WNGSDSVVMTGSYNNFFRMFDRNTKR---DIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWH 425 (447)
T ss_dssp ECTTSSEEEEECSTTEEEEEETTTCC---EEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEEC
T ss_pred ECCCCCEEEEeccCCEEEEEEcCCCc---cee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEEC
Confidence 999999999999 9999999999873 221 11 223568899999
Q ss_pred CCCCEEEEEEcCCeEEEEECC
Q 003177 783 PTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 783 pdg~~L~sgs~dg~I~Iwdl~ 803 (842)
|++.+|++++.++ +++|..+
T Consensus 426 p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 426 PKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp SSSSEEEEECSSC-EEEEECC
T ss_pred CCCCEEEEEecce-eeeeccc
Confidence 9999888887765 8888643
No 102
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=7.2e-30 Score=283.02 Aligned_cols=274 Identities=14% Similarity=0.161 Sum_probs=216.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEc
Q 003177 553 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDT 631 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl 631 (842)
+..+.+|.+.|+|++|+|||++||+|+.++ ++|||+.+++....... ..+..++|.++++.+ ++++.|++|+|||+
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 445688999999999999999999998765 78999998877655432 258888999988887 56778899999999
Q ss_pred CCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-ceeeEEeecCCeeEEEEeCCCCEEEE--EEcC
Q 003177 632 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILA--AAIE 708 (842)
Q Consensus 632 ~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-~~i~~~~~~~~i~~v~~sp~g~~l~~--~s~d 708 (842)
.++.. +..+. |...|.+++|+++ .++++. |+.|++||+.++ +.+..+.. ....+++++ ..+++ ++.+
T Consensus 89 ~~~~~-~~~~~-~~~~v~~v~~~~~---~~~~~~-~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~ 158 (355)
T 3vu4_A 89 VKKQD-VSRIK-VDAPVKDLFLSRE---FIVVSY-GDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNL 158 (355)
T ss_dssp TTTEE-EEEEE-CSSCEEEEEECSS---EEEEEE-TTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCT
T ss_pred CCCcE-EEEEE-CCCceEEEEEcCC---EEEEEE-cCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcC
Confidence 98654 55554 6779999999976 233333 789999999988 77766665 444566677 56666 4678
Q ss_pred CeEEEEECCCCe---------------E-EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCe-EEEEEcCCCCCceeEEEee
Q 003177 709 NYISILDVETQV---------------C-RLKLQGHKNQVHSVCWNTSGEYLASVS-DEL-VRVWSIGSGSKGECIHELS 770 (842)
Q Consensus 709 g~I~IwDl~t~~---------------~-~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~-I~IwDl~s~~~~~~i~~~~ 770 (842)
|.|++||++++. + +..+.+|...|++++|+|+|.+|++++ |++ |+|||++++ .++..+.
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~ 235 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFR 235 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---CEEEEEE
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEE
Confidence 999999999865 2 678889999999999999999999999 998 999999988 7788887
Q ss_pred -c-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE---EE--------------------c-cCCCCeeEEEEeC
Q 003177 771 -C-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TL--------------------S-AHDKLVSSLAAST 824 (842)
Q Consensus 771 -~-~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~---~~--------------------~-~h~~~V~sla~sp 824 (842)
+ |...|.+++|+|++.+|++++.|++|+|||+..+... .+ . .+......++|++
T Consensus 236 ~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 315 (355)
T 3vu4_A 236 RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS 315 (355)
T ss_dssp CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS
T ss_pred cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC
Confidence 4 8999999999999999999999999999999765311 10 0 1122347799999
Q ss_pred CCCEEEEEeCCCcEEEcC
Q 003177 825 VNGMVASASHDKCVKIWK 842 (842)
Q Consensus 825 dg~~Lasgs~DG~V~IWd 842 (842)
++++|++++.||.+++|+
T Consensus 316 d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 316 ESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEE
Confidence 999999999999999985
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-29 Score=287.05 Aligned_cols=272 Identities=16% Similarity=0.179 Sum_probs=222.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEecCCCe---EEEEecc-------------------------------------
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEE------------------------------------- 600 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~---~~~~l~~------------------------------------- 600 (842)
.+|.|++|+++|++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468999999999977666 57899999999888 5555543
Q ss_pred -----------------CCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcC--CCCceeeEee--cCccceEEEEEcCCCC
Q 003177 601 -----------------HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTE--NPDYSLRTFT--GHSTTVMSLDFHPSKE 658 (842)
Q Consensus 601 -----------------h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~--t~~~~i~~~~--~h~~~V~sl~fspdg~ 658 (842)
|...|++++|+|++++| ++++.||.|+|||+. ++. .+..+. .|...|.+++|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-VLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-CEEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-eeeeeecccCCCCceEEEEcCCCC
Confidence 33379999999999996 899999999999998 554 355554 5678999999999977
Q ss_pred cEEEEEeCCCcEEEEECCCCceee----EEe-ecCCeeEEEEeCC---CCEEEEEEcCCeEEEEECCCCeEEEE-EeCCC
Q 003177 659 DLLCSCDNNSEIRYWSINNGSCAG----VFK-CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLK-LQGHK 729 (842)
Q Consensus 659 ~llasgs~Dg~I~vwDl~t~~~i~----~~~-~~~~i~~v~~sp~---g~~l~~~s~dg~I~IwDl~t~~~~~~-l~~h~ 729 (842)
+|++++.+|.|++|++.+++... .+. +...|.+++|+|+ +.+|++++.|+.|++||++++.++.. +.+|.
T Consensus 163 -~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 163 -TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp -EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred -EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 56688889999999998877553 333 4678999999999 88999999999999999999887777 55899
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-------------------------cCCCceEEEEEeC
Q 003177 730 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------------------------CTGNKFHSCVFHP 783 (842)
Q Consensus 730 ~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-------------------------~~~~~I~sv~~sp 783 (842)
..|.+++|+ ++.+|++++ |+.|+|||+.++ .++..+. .....|..++|+|
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 999999999 999999999 999999999988 4555544 2345789999999
Q ss_pred CCCEEEEEE-cCCeEEEEEC--CCC---eEE-EEccCCCCeeEEEEeCCCCEEEEEeC-------CCcEEEc
Q 003177 784 TFPSLLVIG-CYETLELWNM--TEN---KTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIW 841 (842)
Q Consensus 784 dg~~L~sgs-~dg~I~Iwdl--~~~---~~~-~~~~h~~~V~sla~spdg~~Lasgs~-------DG~V~IW 841 (842)
++.+|++++ .++.|+||++ ..+ +.+ .+..| ..|.+++|+|++ ++++++. +..|.||
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence 999999999 8999999999 554 444 45566 889999999954 4554432 4457777
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=2.7e-30 Score=290.05 Aligned_cols=277 Identities=16% Similarity=0.197 Sum_probs=226.4
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEecC
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 590 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSp-dg~~Lasgs~Dg~I~vwd~~ 590 (842)
.++++|+.|+.|.+|...... .....+..+.+|.+.|++++|+| ++++|++|+.||.|+|||+.
T Consensus 48 ~~~~~~~~~g~i~v~~~~~~~---------------~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 48 ALICEASGGGAFLVLPLGKTG---------------RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp EEEBCCSSSCCEEEEETTCCE---------------ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred EEEEEEcCCCEEEEEECccCC---------------CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 355568889999999664321 11122445789999999999999 99999999999999999999
Q ss_pred CC-------eEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeeEe--ecCccceEEEEEcCCCCcE
Q 003177 591 SF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDL 660 (842)
Q Consensus 591 t~-------~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~t~~~~i~~~--~~h~~~V~sl~fspdg~~l 660 (842)
++ +.+..+.+|...|++++|+|++ .+|++++.|+.|+|||+.++. .+..+ ..|...|.+++|+|++. +
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~ 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGA-L 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCSCEEEEEECTTSS-C
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCCceEEEEECCCCC-E
Confidence 87 5678889999999999999998 699999999999999999865 46666 78999999999999877 5
Q ss_pred EEEEeCCCcEEEEECCCCceeeEE-eecC--CeeEEEEeCCCCEEEEE---EcCCeEEEEECCCCeE-EEEE-eCCCCCE
Q 003177 661 LCSCDNNSEIRYWSINNGSCAGVF-KCQS--GATQMRFQPRLGRILAA---AIENYISILDVETQVC-RLKL-QGHKNQV 732 (842)
Q Consensus 661 lasgs~Dg~I~vwDl~t~~~i~~~-~~~~--~i~~v~~sp~g~~l~~~---s~dg~I~IwDl~t~~~-~~~l-~~h~~~V 732 (842)
|++++.|+.|++||+++++.+..+ ..+. .+.++.|+|++.+++++ +.|+.|++||++++.. +... ..|...|
T Consensus 191 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 270 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270 (402)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence 668889999999999999998887 3333 37999999998888888 5899999999998643 2222 2477889
Q ss_pred EEEEEcCCCCEEEE-Ee-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 733 HSVCWNTSGEYLAS-VS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 733 ~sl~~spdg~~Las-gs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
.+++|+|++.+|++ ++ |+.|++||+.++.. ...+..+. +...|.+++|+|++.++++ .++.+++|++.++++.
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 99999999999865 54 99999999998753 22333333 5689999999999987654 5669999999887654
No 105
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=2.4e-29 Score=280.18 Aligned_cols=277 Identities=12% Similarity=0.133 Sum_probs=211.0
Q ss_pred CceEEeccCCC-------ceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEE----
Q 003177 511 DRFVDDGSLDD-------NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG---- 579 (842)
Q Consensus 511 ~~~l~~Gs~d~-------~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs---- 579 (842)
..++++|+-+. .|++|.......... ..........+.+|...|.|++++ +..+++|+
T Consensus 26 g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~---------~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~ 94 (365)
T 4h5i_A 26 DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK---------EQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENS 94 (365)
T ss_dssp TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHH---------HHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCH
T ss_pred CcEEEEECCCccccCCCCEEEEEEEcCCCccee---------eeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCc
Confidence 36788876443 488886654422100 001112234578999999999876 45676654
Q ss_pred -------CCCcEEEEecCCCeE----EEEe-----ccCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCCceeeEe
Q 003177 580 -------HDKKAVLWCTESFTV----KSTL-----EEHTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTF 641 (842)
Q Consensus 580 -------~Dg~I~vwd~~t~~~----~~~l-----~~h~~~I~~l~fspdg~~Latgs--~Dg~I~IWDl~t~~~~i~~~ 641 (842)
.|+.|++|++.+... .... ..+...+.+++|+|||++|++++ .|++|+|||+.+... +..+
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~-~~~~ 173 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE-KFEI 173 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE-EEEE
T ss_pred cEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE-EEEe
Confidence 467899998765421 1111 23556799999999999987655 689999999998654 4444
Q ss_pred ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe---ecCCeeEEEEeCCCCEEEEEEcCC----eEEEE
Q 003177 642 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN----YISIL 714 (842)
Q Consensus 642 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---~~~~i~~v~~sp~g~~l~~~s~dg----~I~Iw 714 (842)
.|...|.+++|+|++. ++++++ ++.+++|+..+++.+.... +...+.+++|+|++..+++++.++ .+.+|
T Consensus 174 -~~~~~V~~v~fspdg~-~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 174 -ETRGEVKDLHFSTDGK-VVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp -ECSSCCCEEEECTTSS-EEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred -CCCCceEEEEEccCCc-eEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence 4778899999999987 565776 5567788887777665433 234589999999999999999887 68889
Q ss_pred ECCCCeE----EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCEE
Q 003177 715 DVETQVC----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSL 788 (842)
Q Consensus 715 Dl~t~~~----~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv~~spdg~~L 788 (842)
|+..... ...+.+|...|++++|+|||++|++++ |+.|+|||+.++ +++..+ .+|...|++++|+|||++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~---~~~~~~~~gH~~~V~~v~fSpdg~~l 327 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL---SMSKIFKQAHSFAITEVTISPDSTYV 327 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEETTSSSSCEEEEEECTTSCEE
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC---cEEEEecCcccCCEEEEEECCCCCEE
Confidence 9876643 356778999999999999999999999 999999999987 777764 6899999999999999999
Q ss_pred EEEEcCCeEEEEECCCC
Q 003177 789 LVIGCYETLELWNMTEN 805 (842)
Q Consensus 789 ~sgs~dg~I~Iwdl~~~ 805 (842)
++++.|++|+|||+...
T Consensus 328 aS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 328 ASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSEEEEEECCTT
T ss_pred EEEeCCCeEEEEEcCCC
Confidence 99999999999999643
No 106
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.1e-29 Score=286.35 Aligned_cols=245 Identities=18% Similarity=0.320 Sum_probs=210.7
Q ss_pred EEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCC---------CceeeEeecCccceEEEEEcCCCCcEEEEEe
Q 003177 596 STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP---------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 665 (842)
Q Consensus 596 ~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~t~---------~~~i~~~~~h~~~V~sl~fspdg~~llasgs 665 (842)
.....|.+.|++++|+|+ +.+|++++.||.|+|||+.+. ...+..+.+|...|.+++|+|++..+|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 344579999999999997 789999999999999999862 3456788899999999999999887888999
Q ss_pred CCCcEEEEECCCCce-------eeEE-eecCCeeEEEEeC-CCCEEEEEEcCCeEEEEECCCC---eEEEEEeCCCCCEE
Q 003177 666 NNSEIRYWSINNGSC-------AGVF-KCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 733 (842)
Q Consensus 666 ~Dg~I~vwDl~t~~~-------i~~~-~~~~~i~~v~~sp-~g~~l~~~s~dg~I~IwDl~t~---~~~~~l~~h~~~V~ 733 (842)
.||.|++||+.++.. ...+ .+...|.+++|+| ++..|++++.|+.|++||++++ ..+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987432 2233 3456799999999 6778889999999999999987 57777888999999
Q ss_pred EEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC------
Q 003177 734 SVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE------ 804 (842)
Q Consensus 734 sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~-~L~sgs~dg~I~Iwdl~~------ 804 (842)
+++|+|++. +|++++ |+.|++||++... ..+..+..|...|.+++|+|++. .|++++.|+.|+|||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 999999987 677888 9999999999743 56777888999999999999995 688899999999999987
Q ss_pred --------CeEE-EEccCCCCeeEEEEeCCCC-EEEEEeCCCcEEEcC
Q 003177 805 --------NKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 842 (842)
Q Consensus 805 --------~~~~-~~~~h~~~V~sla~spdg~-~Lasgs~DG~V~IWd 842 (842)
..++ ...+|...|++++|+|++. +|++++.||.|+||+
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 2333 6678999999999999999 999999999999996
No 107
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-30 Score=286.52 Aligned_cols=265 Identities=9% Similarity=0.025 Sum_probs=211.6
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC---------CCCce
Q 003177 567 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---------NPDYS 637 (842)
Q Consensus 567 ~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---------t~~~~ 637 (842)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 344578899999999999999999998888776 567888899988 9999999999999766 33222
Q ss_pred eeEeecCccceEEEEEcC--CCCcEEEEEeCCCcEEEEECCCCceeeEEe--ecCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 003177 638 LRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISI 713 (842)
Q Consensus 638 i~~~~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~~v~~sp~g~~l~~~s~dg~I~I 713 (842)
.....+|...|.+++|+| ++. ++++++.||.|++||+++++++..+. +...+.+++|+|++.++++|+.||.|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 233346778999999999 866 67799999999999999999876653 2446999999999999999999999999
Q ss_pred EECCCCeEE-EEEeC-CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCce--EEEEEeCCCCEEE
Q 003177 714 LDVETQVCR-LKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPTFPSLL 789 (842)
Q Consensus 714 wDl~t~~~~-~~l~~-h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I--~sv~~spdg~~L~ 789 (842)
||+++++.+ ..+.. |...|++++|+|++.+|++++|+.|++||+++......+..+..+...+ .+++|+|++.+|+
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 999999877 77887 9999999999999999999997799999999875433333332233333 4699999999999
Q ss_pred EEEc-CCeEEEEECCCCeEE-EEccCCCCeeEEEEeC---CCCEEEEEeCCCcEEEc
Q 003177 790 VIGC-YETLELWNMTENKTL-TLSAHDKLVSSLAAST---VNGMVASASHDKCVKIW 841 (842)
Q Consensus 790 sgs~-dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~sp---dg~~Lasgs~DG~V~IW 841 (842)
+++. ++.|+||++...... .. ..+..++|.+ +...|++++.||.+.++
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 9998 999999998655322 22 5567777877 77788888888888765
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=5.3e-29 Score=270.89 Aligned_cols=262 Identities=13% Similarity=0.127 Sum_probs=223.0
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEec-
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT- 589 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~-~Lasgs~Dg~I~vwd~- 589 (842)
.++++|+.|+.|++|...... .......+.+|...|++++|+|+++ +|++|+.||.|++||+
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 87 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQA----------------KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp TEEEEEETTSEEEEEEEETTT----------------TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred CEEEEEcCCCeEEEEEeCCCC----------------ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence 688999999999999654331 1122344558999999999999999 9999999999999999
Q ss_pred CCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------CCceeeEeecCccceEEEEEcCCCC
Q 003177 590 ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKE 658 (842)
Q Consensus 590 ~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t---------~~~~i~~~~~h~~~V~sl~fspdg~ 658 (842)
.+++. ..+.+ |...|.+++|+| +.+|++++.|+.|++||+.+ .. ++..+. |...|.+++|++++
T Consensus 88 ~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 88 GSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-NSNNTK-VKNKIFTMDTNSSR- 162 (342)
T ss_dssp SSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES-CSSSSS-SCCCEEEEEECSSE-
T ss_pred cCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC-eeeEEe-eCCceEEEEecCCc-
Confidence 87765 67788 999999999999 99999999999999999986 43 244444 88999999999875
Q ss_pred cEEEEEeCCCcEEEEECCC-Ccee---eEEeecCCeeEEEEeC-CCCEEEEEEcCCeEEEEECCCC------eEEEEEeC
Q 003177 659 DLLCSCDNNSEIRYWSINN-GSCA---GVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ------VCRLKLQG 727 (842)
Q Consensus 659 ~llasgs~Dg~I~vwDl~t-~~~i---~~~~~~~~i~~v~~sp-~g~~l~~~s~dg~I~IwDl~t~------~~~~~l~~ 727 (842)
+++++.|+.|++||+++ +... ....+...+.+++|+| ++..+++++.||.|++||++.. +....+..
T Consensus 163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred --EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence 77889999999999998 5532 2223466799999999 9999999999999999999876 77778887
Q ss_pred CCC---------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcCCe
Q 003177 728 HKN---------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYET 796 (842)
Q Consensus 728 h~~---------~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~~spdg~~L~sgs~dg~ 796 (842)
|.. .|.+++|+|++.+|++++ ||.|++||+.++ ..+..+..| ...|.+++ |++.+|++++.|+.
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH---hHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 765 999999999999999999 999999999987 788888888 99999999 99999999999998
Q ss_pred -EEEEE
Q 003177 797 -LELWN 801 (842)
Q Consensus 797 -I~Iwd 801 (842)
.+.|.
T Consensus 316 ~~~~~~ 321 (342)
T 1yfq_A 316 FKTNAA 321 (342)
T ss_dssp HHHCSS
T ss_pred cccccc
Confidence 44444
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=7.8e-28 Score=267.66 Aligned_cols=275 Identities=14% Similarity=0.154 Sum_probs=226.7
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEecC
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 590 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~L-asgs~Dg~I~vwd~~ 590 (842)
.++++++.|+.|++|..... ..+..+..|. .+.+++|+|++++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~-------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN-------------------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT-------------------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCC-------------------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 46788899999999965332 2344556665 48999999999977 566789999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCc
Q 003177 591 SFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 669 (842)
Q Consensus 591 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 669 (842)
+++.+..+..+. .|.+++|+|++++|++++ .++.|++||+.++.. +..+. +...+.+++|+|+++.++++++.++.
T Consensus 63 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 63 TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKT 139 (391)
T ss_dssp TTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred CCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEe-CCCCcceEEECCCCCEEEEEeCCCCE
Confidence 999998887665 899999999999886554 679999999998653 44554 44578999999999988789999999
Q ss_pred EEEEECCCCceeeEEeecCCeeEEEEeCCCCEEE-EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 003177 670 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 748 (842)
Q Consensus 670 I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~-~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs 748 (842)
|++||+.+++.+..+..+..+.+++|+|+++.++ +++.++.|++||+++++.+..+. +...+.+++|+|++++|++++
T Consensus 140 v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 140 VSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEe
Confidence 9999999999999998888899999999999885 55567999999999998887776 566899999999999888775
Q ss_pred ----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCeEE-EEccCC
Q 003177 749 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKTL-TLSAHD 814 (842)
Q Consensus 749 ----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~-sgs~dg~I~Iwdl~~~~~~-~~~~h~ 814 (842)
++.|++||+.++ ..+..+..+ ..+.+++|+|++++|+ +++.++.|++||+.+++.+ .+..|.
T Consensus 219 ~~~~~~~v~~~d~~~~---~~~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 219 VDKYFNTVSMIDTGTN---KITARIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK 286 (391)
T ss_dssp ECSSCCEEEEEETTTT---EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred cCcCCCcEEEEECCCC---eEEEEEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence 689999999887 666666654 4578999999999885 4567889999999999877 444443
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=3.2e-28 Score=270.80 Aligned_cols=262 Identities=11% Similarity=0.122 Sum_probs=223.5
Q ss_pred CEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCceeeEeecCccceEEE
Q 003177 573 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 651 (842)
Q Consensus 573 ~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl 651 (842)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++. +..+..+. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCC-Cccce
Confidence 467888999999999999999999888775 48999999999987 6677899999999987654 55555444 89999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEE-EEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 003177 652 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGHKN 730 (842)
Q Consensus 652 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l-~~~s~dg~I~IwDl~t~~~~~~l~~h~~ 730 (842)
+|+|+++.++++++.++.|++||+.+++.+..+..+..+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+ .
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 999999988888888899999999999999999888889999999999988 45666899999999999998888765 5
Q ss_pred CEEEEEEcCCCCEEE-EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE---cCCeEEEEECCCC
Q 003177 731 QVHSVCWNTSGEYLA-SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG---CYETLELWNMTEN 805 (842)
Q Consensus 731 ~V~sl~~spdg~~La-sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs---~dg~I~Iwdl~~~ 805 (842)
.+.+++|+|++++|+ +++ ++.|++||++++ .++..+. +...+.+++|+|++.+|++++ .++.|++||+.++
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 679999999999885 445 889999999887 5555554 456789999999999999998 6889999999999
Q ss_pred eEEEEccCCCCeeEEEEeCCCCEE-EEEeCCCcEEEcC
Q 003177 806 KTLTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK 842 (842)
Q Consensus 806 ~~~~~~~h~~~V~sla~spdg~~L-asgs~DG~V~IWd 842 (842)
+.+........+.+++|+|++++| ++++.|+.|++||
T Consensus 235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 887544444568999999999877 6778899999996
No 111
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-30 Score=304.95 Aligned_cols=256 Identities=9% Similarity=0.055 Sum_probs=199.3
Q ss_pred cCCCCEEEEEECCCcEEEEecCCCeE----EEEeccCCCCeEEEEEcCC------CCEEEEEeCCCeEEEEEcCCCCc--
Q 003177 569 SPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRFSPS------LSRLATSSADRTVRVWDTENPDY-- 636 (842)
Q Consensus 569 Spdg~~Lasgs~Dg~I~vwd~~t~~~----~~~l~~h~~~I~~l~fspd------g~~Latgs~Dg~I~IWDl~t~~~-- 636 (842)
+|++++|++++.|++|+|||+.+++. ..++.+|.+.|.+|+|+|+ +.+||+++.||+|+|||+.++..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 34444555567889999999987654 2446678899999999996 57999999999999999986532
Q ss_pred --------eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce-eeEEe-ecCCeeEE--EEeCCC-CEEE
Q 003177 637 --------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQM--RFQPRL-GRIL 703 (842)
Q Consensus 637 --------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~~-~~~~i~~v--~~sp~g-~~l~ 703 (842)
+...+.+|...|++++|++++ .|++|+.||+|++||++++.. ...+. +...|.++ .|++++ ..|+
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 134678899999999999863 688999999999999997643 34444 46779998 567777 7899
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003177 704 AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 780 (842)
Q Consensus 704 ~~s~dg~I~IwDl~t~~~~~~l~~h~~--~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 780 (842)
+++.|+.|+|||+++++++..+.+|.. .|.+++|+|++..|++++ |++|++||++++ .++..+.+|...|++++
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRETTITAIG 404 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---TCCEEEEECSSCEEEEE
T ss_pred EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---ccceeeecCCCceEEEE
Confidence 999999999999998877666666653 588999999999999888 889999999987 56677788999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEEEEc-----cCCCCeeEEEEeCCCCEE
Q 003177 781 FHPTFPSLLVIGCYETLELWNMTENKTLTLS-----AHDKLVSSLAASTVNGMV 829 (842)
Q Consensus 781 ~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~-----~h~~~V~sla~spdg~~L 829 (842)
|+|++++|++|+.|++|++||+..+...... .+...|.+++|+|++..+
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred eCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 9999999999999999999998664211111 112257899999999855
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.9e-30 Score=294.64 Aligned_cols=262 Identities=9% Similarity=0.077 Sum_probs=212.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 637 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~ 637 (842)
.-...|.+++|+|||++||+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-- 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-- 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce--
Confidence 3456799999999999999999999999 765554 447999999999999998 45555555543211
Q ss_pred eeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecC-----CeeEEEEeCCCCEEEEEEcCCeEE
Q 003177 638 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-----GATQMRFQPRLGRILAAAIENYIS 712 (842)
Q Consensus 638 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-----~i~~v~~sp~g~~l~~~s~dg~I~ 712 (842)
...+ .|...|.+++|+|+|. .|++++.||.|++||... ++..+.++. .+.+++|+|+|.+|++++.||.|+
T Consensus 79 ~~~~-~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 79 LLNS-QPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SSTT-SCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred Eeec-CCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 1222 5688999999999987 566899999999999654 666555332 499999999999999999999999
Q ss_pred EEECCCCe-------EEEEE----eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-ecCCCceEEEE
Q 003177 713 ILDVETQV-------CRLKL----QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCV 780 (842)
Q Consensus 713 IwDl~t~~-------~~~~l----~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv~ 780 (842)
|||+.++. .+.++ .+|...|.+++|+||| +++++.|+.|++||+..+........+ ..|...|.+++
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 99999874 35666 5678899999999999 444444999999999887432234555 36778999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEEE-EccCCCCeeEEEE--eCCCCEEEEEeCCCcEEEcC
Q 003177 781 FHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 781 ~spdg~~L~sgs~dg~I~Iwdl~~~~~~~-~~~h~~~V~sla~--spdg~~Lasgs~DG~V~IWd 842 (842)
|+ +..|++++ ++.|++||+.+++... ..+|.+.|.+++| +|++..|++++.||+ +||.
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 99 57788776 6999999999999854 4489999999999 999999999999999 8884
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=3.6e-29 Score=284.43 Aligned_cols=252 Identities=19% Similarity=0.367 Sum_probs=219.2
Q ss_pred EEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEecCC----------CeEEEEeccCCCCeEEEEEcCCCC-EEEEEe
Q 003177 554 QLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLS-RLATSS 621 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpd-g~~Lasgs~Dg~I~vwd~~t----------~~~~~~l~~h~~~I~~l~fspdg~-~Latgs 621 (842)
.....|.+.|++++|+|+ +.+||+++.||.|+|||+.+ ...+..+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997 77999999999999999986 677788899999999999999988 999999
Q ss_pred CCCeEEEEEcCCCCc------eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---ceeeEEe-ecCCee
Q 003177 622 ADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFK-CQSGAT 691 (842)
Q Consensus 622 ~Dg~I~IWDl~t~~~------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~---~~i~~~~-~~~~i~ 691 (842)
.||.|++||+.+... ....+.+|...|.+++|+|++..+|++++.||.|++||++++ +.+..+. +...|.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987432 135667899999999999977889999999999999999987 4555553 567899
Q ss_pred EEEEeCCCC-EEEEEEcCCeEEEEECCC-CeEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCC-----
Q 003177 692 QMRFQPRLG-RILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK----- 762 (842)
Q Consensus 692 ~v~~sp~g~-~l~~~s~dg~I~IwDl~t-~~~~~~l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~----- 762 (842)
+++|+|++. .+++++.||.|++||+++ ..++..+..|...|.+++|+|++. +|++++ |+.|+|||+.....
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999887 688999999999999998 567888889999999999999985 677777 99999999987321
Q ss_pred ------ceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCC
Q 003177 763 ------GECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN 805 (842)
Q Consensus 763 ------~~~i~~~~~~~~~I~sv~~spdg~-~L~sgs~dg~I~Iwdl~~~ 805 (842)
...+..+.+|...|.+++|+|+++ +|++++.|+.|+||++...
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 256777888899999999999999 8999999999999998654
No 114
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.9e-28 Score=263.03 Aligned_cols=278 Identities=19% Similarity=0.248 Sum_probs=205.8
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcEEEEec
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSp--dg~~Lasgs~Dg~I~vwd~ 589 (842)
.++++|+.|+.|++|...... ..+.....+.+|.+.|++++|+| |+.+|++|+.||.|++||+
T Consensus 24 ~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 24 RHVATCSSDQHIKVFKLDKDT---------------SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp SEEEEEETTSEEEEEEECSSS---------------CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred CEEEEeeCCCeEEEEECCCCC---------------CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 689999999999999765431 12345677889999999999999 6999999999999999999
Q ss_pred CCC---------eEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCceeeEe-------------ecCc
Q 003177 590 ESF---------TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTF-------------TGHS 645 (842)
Q Consensus 590 ~t~---------~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~t~~~~i~~~-------------~~h~ 645 (842)
.++ +.+..+..|...|.+++|+|+ +.+|++++.||.|++||+.++.. +..+ ..|.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 167 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD-LRSWTLTSEMKVLSIPPANHL 167 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC-TTCCEEEEEEESCSCCCSSCS
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH-hccccccccccccccccCCcc
Confidence 887 668888999999999999999 99999999999999999987653 2111 2578
Q ss_pred cceEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCce--eeEEe-ecCCeeEEEEeCCC----CEEEEEEcCCeEEEEEC
Q 003177 646 TTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSC--AGVFK-CQSGATQMRFQPRL----GRILAAAIENYISILDV 716 (842)
Q Consensus 646 ~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~--i~~~~-~~~~i~~v~~sp~g----~~l~~~s~dg~I~IwDl 716 (842)
..|.+++|+|+ ...++++++.|+.+.+|+...++. +..+. +...|.+++|+|++ .+|++++.||.|++||+
T Consensus 168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~ 247 (351)
T 3f3f_A 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247 (351)
T ss_dssp CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEE
T ss_pred cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeC
Confidence 89999999997 345777899999998888887765 33333 45679999999998 78999999999999999
Q ss_pred CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003177 717 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 791 (842)
Q Consensus 717 ~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sg 791 (842)
+++........+...+....+.+....+..+. ...+.+|+... ...+..+..|...|++++|+|++.+|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 248 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ---VELLSEHDDHNGEVWSVSWNLTGTILSSA 324 (351)
T ss_dssp EECC---------------------------------------CCSEE---EEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred CCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc---ccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence 98765555544444555555555555555544 22344444433 37788888999999999999999999999
Q ss_pred EcCCeEEEEECCCCeEE
Q 003177 792 GCYETLELWNMTENKTL 808 (842)
Q Consensus 792 s~dg~I~Iwdl~~~~~~ 808 (842)
+.|+.|+|||+.+++.+
T Consensus 325 ~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 325 GDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ETTSCEEEEEECTTSCE
T ss_pred cCCCcEEEEecCcCcch
Confidence 99999999999887544
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-29 Score=307.77 Aligned_cols=251 Identities=20% Similarity=0.312 Sum_probs=214.3
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC--CCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEE
Q 003177 553 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 628 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~--t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~I 628 (842)
+.++.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35678999999999999999999999999999999998 56777889999999999999988 999999999999999
Q ss_pred EEcCCCCc-eeeEeecCccceEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCcee---eEEeecCCeeEEEEeC-----
Q 003177 629 WDTENPDY-SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCA---GVFKCQSGATQMRFQP----- 697 (842)
Q Consensus 629 WDl~t~~~-~i~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~i---~~~~~~~~i~~v~~sp----- 697 (842)
||+.++.. .+..+.+|...|.+++|+|+ +. ++++++.||.|++||++++... ....+...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99998642 46677889999999999998 55 7779999999999999887432 2233567899999999
Q ss_pred --------CCCEEEEEEcCCeEEEEECCCC----eEEEEEeCCCCCEEEEEEcCC---CCEEEEEe-CCeEEEEEcCCCC
Q 003177 698 --------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGS 761 (842)
Q Consensus 698 --------~g~~l~~~s~dg~I~IwDl~t~----~~~~~l~~h~~~V~sl~~spd---g~~Lasgs-Dg~I~IwDl~s~~ 761 (842)
++..+++++.||.|++||++++ .+...+.+|...|++++|+|+ +.+|++++ ||.|++||+.++.
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 5889999999999999999876 667788899999999999999 89999999 9999999998863
Q ss_pred Cc--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 762 KG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 762 ~~--~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
.. ..+.....+...|++++|+|++.+|++++.||.|++||+..
T Consensus 241 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 21 12333445778899999999999999999999999999874
No 116
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.1e-27 Score=261.81 Aligned_cols=287 Identities=16% Similarity=0.228 Sum_probs=231.4
Q ss_pred CCCeeEEEEecCCCCcccccCCcccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCe
Q 003177 484 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 563 (842)
Q Consensus 484 s~~~s~~~~~~~~~~~~~~~~~~l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V 563 (842)
......+.|+++.. ...++++|+.|+.|++|...... . .....+.+|.+.|
T Consensus 39 ~~~v~~~~~~~~~~------------~g~~l~~~~~dg~i~iw~~~~~~---------------~--~~~~~~~~h~~~v 89 (368)
T 3mmy_A 39 DDSIGCLSFSPPTL------------PGNFLIAGSWANDVRCWEVQDSG---------------Q--TIPKAQQMHTGPV 89 (368)
T ss_dssp SSCEEEEEECCTTS------------SSEEEEEEETTSEEEEEEECTTS---------------C--EEEEEEEECSSCE
T ss_pred CCceEEEEEcCCCC------------CceEEEEECCCCcEEEEEcCCCC---------------c--eeEEEeccccCCE
Confidence 34667777776531 13688999999999999765421 1 1235678899999
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEE--cCCCCEEEEEeCCCeEEEEEcCCCCceeeEe
Q 003177 564 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--SPSLSRLATSSADRTVRVWDTENPDYSLRTF 641 (842)
Q Consensus 564 ~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~f--spdg~~Latgs~Dg~I~IWDl~t~~~~i~~~ 641 (842)
++++|+|++++|++++.||.|++||+.+++.+. +..|...|++++| ++++.+|++++.||.|++||+.++.. +..+
T Consensus 90 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~ 167 (368)
T 3mmy_A 90 LDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMVL 167 (368)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEEE
T ss_pred EEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEEE
Confidence 999999999999999999999999999988776 5579999999999 89999999999999999999998654 5666
Q ss_pred ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe---ecCCeeEEEEeCCCCE----EEEEEcCCeEEEE
Q 003177 642 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGR----ILAAAIENYISIL 714 (842)
Q Consensus 642 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---~~~~i~~v~~sp~g~~----l~~~s~dg~I~Iw 714 (842)
..+. .+.++.+.++ .+++++.++.+++|+++......... ....+.++.+.++... +++++.|+.|++|
T Consensus 168 ~~~~-~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 168 QLPE-RCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp ECSS-CEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred ecCC-CceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 6554 6777877754 56678889999999998765443322 2345667777665544 9999999999999
Q ss_pred ECCCC---eEEEEEeCCCC------------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003177 715 DVETQ---VCRLKLQGHKN------------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 778 (842)
Q Consensus 715 Dl~t~---~~~~~l~~h~~------------~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~s 778 (842)
|++.. ..+..+..|.. .|++++|+|++.+|++++ |+.|+|||+.++ .++..+..|...|.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~ 320 (368)
T 3mmy_A 244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---TKLKTSEQLDQPISA 320 (368)
T ss_dssp ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCCCSSCEEE
T ss_pred ecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---cEEEEecCCCCCceE
Confidence 99987 55667777766 799999999999999998 999999999987 788899999999999
Q ss_pred EEEeCCCCEEEEEEcCCeEE---EEECCCCeEE
Q 003177 779 CVFHPTFPSLLVIGCYETLE---LWNMTENKTL 808 (842)
Q Consensus 779 v~~spdg~~L~sgs~dg~I~---Iwdl~~~~~~ 808 (842)
++|+|++.+|++++.|+..+ +|+......+
T Consensus 321 ~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i 353 (368)
T 3mmy_A 321 CCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYI 353 (368)
T ss_dssp EEECTTSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred EEECCCCCeEEEEecccccccccccCCCcccee
Confidence 99999999999999988444 4445544444
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.3e-29 Score=288.40 Aligned_cols=245 Identities=10% Similarity=0.109 Sum_probs=205.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCC-----CeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSADRTVRVWDTE 632 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~-----~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 632 (842)
.|...|.+|+|||||++||+++.||.|+|||... ++..+. |.. .|.+++|+|||++||+|+.||+|+|||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 5688999999999999999999999999999654 666777 765 49999999999999999999999999999
Q ss_pred CCCc------eeeEe----ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcee---eEEe--ecCCeeEEEEeC
Q 003177 633 NPDY------SLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK--CQSGATQMRFQP 697 (842)
Q Consensus 633 t~~~------~i~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i---~~~~--~~~~i~~v~~sp 697 (842)
++.. .+..+ .+|...|.+++|+|+| +++++.|++|++||+..++.. .++. +...|.+++|+
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence 8642 35565 6778899999999997 557788999999999887742 3453 34679999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEE--cCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC
Q 003177 698 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW--NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 774 (842)
Q Consensus 698 ~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~--spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~ 774 (842)
+..+++++ ++.|++||+.++.......+|...|..++| +|++..|+++. ||+ ++|...
T Consensus 236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------- 296 (588)
T 2j04_A 236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------- 296 (588)
T ss_dssp -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------
T ss_pred -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------
Confidence 57787776 699999999998885545479999999999 99999999999 889 999975
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeC
Q 003177 775 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 834 (842)
Q Consensus 775 ~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~ 834 (842)
.+.++|++..+++. |++|++|+...+... ...+...|.+++|+|||..+|+++.
T Consensus 297 ---~~~~spd~~l~a~~--d~~v~lW~~~g~~l~-~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ---ELHVTADNIIAPYL--EKKFKKWSTIWNEFN-NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ---SEEEECCCSSHHHH--HHHHHHTTTTTTSSS-SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred ---cEEECCCceEEEEc--CCEEEEEECCCCcee-eeccceEEEEEEECCCCCEEEEEEe
Confidence 15699999866664 899999998766533 3344677999999999999999874
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.2e-28 Score=277.12 Aligned_cols=261 Identities=15% Similarity=0.145 Sum_probs=177.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEE-----EeccCCCCeEEEEEcC--------CCCEEEEEeCC
Q 003177 557 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSP--------SLSRLATSSAD 623 (842)
Q Consensus 557 ~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~-----~l~~h~~~I~~l~fsp--------dg~~Latgs~D 623 (842)
..|...+....+++++.+||+++.|++|+|||+.++.... .+.+|.+.|++|+|+| |+++||+++.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 3455666666667788899999999999999999876543 3578999999999997 78999999999
Q ss_pred CeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCC-eeEEEEeCCCCEE
Q 003177 624 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRI 702 (842)
Q Consensus 624 g~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-i~~v~~sp~g~~l 702 (842)
++|+|||+.++.. +..+..|...|.+++|+|++..+|++++.|++|++||+++++.......... .... .
T Consensus 166 ~tv~~Wd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~--------~ 236 (393)
T 4gq1_A 166 CTLIIWRLTDEGP-ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW--------L 236 (393)
T ss_dssp SEEEEEEEETTEE-EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC--------S
T ss_pred CeEEEEECCCCce-eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce--------E
Confidence 9999999987654 6667778899999999999888899999999999999998876554432111 1000 0
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc-CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE---
Q 003177 703 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN-TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH--- 777 (842)
Q Consensus 703 ~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~s-pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~--- 777 (842)
+. ++...........+|...|.++.|+ +++..|++++ |+.+++||+..+.. ...+..+...+.
T Consensus 237 ~s---------~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~---~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 237 LT---------LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND---YNEISDSTMKLGPKN 304 (393)
T ss_dssp EE---------EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------C
T ss_pred Ee---------cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC---CceEeeecCccccEE
Confidence 11 1111111122334688899999987 7999999999 99999999987632 222222222222
Q ss_pred ---------------EEEEeC-CC-CEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 003177 778 ---------------SCVFHP-TF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 838 (842)
Q Consensus 778 ---------------sv~~sp-dg-~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V 838 (842)
.+.+++ .+ .++++++.|+.|+|||+.++... ....|...|.+++|+|||++||++++||.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 223333 23 34566677999999999988765 667899999999999999999999988853
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-28 Score=298.55 Aligned_cols=247 Identities=21% Similarity=0.370 Sum_probs=211.2
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ceeeEeecCccceEEEEEcCCC-CcEEEEEeCCCcEEEE
Q 003177 596 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYW 673 (842)
Q Consensus 596 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~-~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vw 673 (842)
..+.+|.+.|++++|+|++++|++|+.||.|+|||+..+. ..+..+.+|...|++++|+++. ..+|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4678999999999999999999999999999999998432 3467788999999999999872 3477799999999999
Q ss_pred ECCCCc--eeeEEe-ecCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCC--eEEEEEeCCCCCEEEEEEcC-------
Q 003177 674 SINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT------- 739 (842)
Q Consensus 674 Dl~t~~--~i~~~~-~~~~i~~v~~sp~--g~~l~~~s~dg~I~IwDl~t~--~~~~~l~~h~~~V~sl~~sp------- 739 (842)
|+.+++ .+..+. +...|.+++|+|+ +..+++++.||.|++||++++ .....+.+|...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999886 444443 4678999999999 999999999999999999877 34556778999999999999
Q ss_pred ------CCCEEEEEe-CCeEEEEEcCCCCCc-eeEEEeecCCCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCCe--
Q 003177 740 ------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTENK-- 806 (842)
Q Consensus 740 ------dg~~Lasgs-Dg~I~IwDl~s~~~~-~~i~~~~~~~~~I~sv~~spd---g~~L~sgs~dg~I~Iwdl~~~~-- 806 (842)
++.+|++++ ||.|++||++++... .++..+..|...|.+++|+|+ +.+|++++.|+.|++||+.++.
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 588999988 999999999876432 456678889999999999999 8999999999999999998873
Q ss_pred ----EEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 807 ----TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 807 ----~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
......|...|++++|+|++.+|++|+.||.|+|||
T Consensus 243 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 224456889999999999999999999999999996
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.9e-26 Score=261.78 Aligned_cols=246 Identities=10% Similarity=0.041 Sum_probs=204.2
Q ss_pred EecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEecC--CCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003177 555 LIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE--SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVW 629 (842)
Q Consensus 555 ~l~gH~~~V~sv~fSpdg~~L-asgs~Dg~I~vwd~~--t~~~~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 629 (842)
..++|.+.|++++|+|++++| ++|+.||.|+|||+. +++.+..+. .|...|++++|+|++.+|++++.||.|++|
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 345788899999999999996 899999999999999 888887776 577899999999999999999999999999
Q ss_pred EcCCCCc---eeeEeecCccceEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCceeeEEe--ecCCeeEEEEeCCCCEE
Q 003177 630 DTENPDY---SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRI 702 (842)
Q Consensus 630 Dl~t~~~---~i~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~~v~~sp~g~~l 702 (842)
++.+... ....+.+|...|.+++|+|+ +..+|++++.|+.|++||+.+++++..+. +...|.+++|+ ++.+|
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence 9987553 23367789999999999998 23477799999999999999998887643 56789999999 99999
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEeC-------------------------CCCCEEEEEEcCCCCEEEEEe--CCeEEEE
Q 003177 703 LAAAIENYISILDVETQVCRLKLQG-------------------------HKNQVHSVCWNTSGEYLASVS--DELVRVW 755 (842)
Q Consensus 703 ~~~s~dg~I~IwDl~t~~~~~~l~~-------------------------h~~~V~sl~~spdg~~Lasgs--Dg~I~Iw 755 (842)
++++.|+.|++||+++++++..+.. ....|.+++|+|++.+|++++ |+.|+||
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 9999999999999999998887763 345799999999999999887 8899999
Q ss_pred Ec--CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-------CCeEEEEECC
Q 003177 756 SI--GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-------YETLELWNMT 803 (842)
Q Consensus 756 Dl--~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~-------dg~I~Iwdl~ 803 (842)
++ ..+.....+..+..+ ..|.+++|+|++ .+++.+. +..|.+|.+.
T Consensus 336 ~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 336 EMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence 99 544444667777776 889999999954 4444433 3457777653
No 121
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=7.9e-26 Score=265.36 Aligned_cols=310 Identities=10% Similarity=0.061 Sum_probs=249.1
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEec
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 589 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~ 589 (842)
...++++++.|+.|.+|+.... ..+.++..+.. +.+++|+|||++|++++.|+.|++||+
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~-------------------~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~ 207 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSK-------------------KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDL 207 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTC-------------------CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred CCEEEEEEcCCCeEEEEECCCc-------------------eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEEC
Confidence 3467788888999999954322 22445553323 899999999999999999999999999
Q ss_pred --CCCeEEEEeccCCCCeEEEEEcC----CCCEEEEEeC-CCeEEEEEcCCCCceeeEeec----------Cc-cceEEE
Q 003177 590 --ESFTVKSTLEEHTQWITDVRFSP----SLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HS-TTVMSL 651 (842)
Q Consensus 590 --~t~~~~~~l~~h~~~I~~l~fsp----dg~~Latgs~-Dg~I~IWDl~t~~~~i~~~~~----------h~-~~V~sl 651 (842)
.+++++.++. +...+..++|+| |+++|++++. +++|.|||..+.+. +..+.. |. ..+.++
T Consensus 208 ~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i 285 (543)
T 1nir_A 208 WAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAI 285 (543)
T ss_dssp TSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEE
T ss_pred cCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEE
Confidence 8899988887 445689999999 9999999885 89999999988654 555443 22 378999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCceee--EEeecCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEeC-
Q 003177 652 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG- 727 (842)
Q Consensus 652 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~--~~~~~~~i~~v~~sp~g~~l~~~s~-dg~I~IwDl~t~~~~~~l~~- 727 (842)
.++|++..++++...++.|.+||+.+.+.+. .+.....+..+.|+|+++++++++. ++.|.+||+.+++++..+..
T Consensus 286 ~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g 365 (543)
T 1nir_A 286 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG 365 (543)
T ss_dssp EECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred EECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence 9999999999999999999999998876554 4555566889999999998887765 78999999999999888874
Q ss_pred ---CCCCEEEEEEcCC-CCEEEEEe--CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEE-----
Q 003177 728 ---HKNQVHSVCWNTS-GEYLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIG----- 792 (842)
Q Consensus 728 ---h~~~V~sl~~spd-g~~Lasgs--Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~sv~~spdg~~L~sgs----- 792 (842)
|.+....+ ++|+ +.+++++. |++|.|||+.+... .+++..+..+...+..+.++|++++|++++
T Consensus 366 ~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~ 444 (543)
T 1nir_A 366 KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD 444 (543)
T ss_dssp SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSS
T ss_pred CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCC
Confidence 55444444 4676 66677764 78999999987321 478999999988889999999999999987
Q ss_pred --cCCeEEEEECCCCeEE-EE---------ccCCCCeeEEEEeCCCCEEEEEe-----CCCcEEEcC
Q 003177 793 --CYETLELWNMTENKTL-TL---------SAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK 842 (842)
Q Consensus 793 --~dg~I~Iwdl~~~~~~-~~---------~~h~~~V~sla~spdg~~Lasgs-----~DG~V~IWd 842 (842)
.+++|.|||+.+++.. .. ..+...+..+.|+|+|+.|+++. .|+.|.|||
T Consensus 445 ~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 445 ARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp HHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred cccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 3679999999988765 32 35678899999999999888763 479999997
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=8.9e-27 Score=258.10 Aligned_cols=245 Identities=9% Similarity=0.029 Sum_probs=188.0
Q ss_pred EEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEe
Q 003177 586 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 665 (842)
Q Consensus 586 vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 665 (842)
||++.+...+..+..|...|++++|+||+++|++|+.++ ++|||+.+... ... .+...+..+++.++++.++++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-IMS--QEMRHLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-EEE--EECSCCCEEEECTTSSEEEEECS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-eee--eecCCeEEEEEcCCCCEEEEEEC
Confidence 566677777777889999999999999999999998775 78999986443 222 22235788889988887777888
Q ss_pred CCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEE
Q 003177 666 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYL 744 (842)
Q Consensus 666 ~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~-~~~~~l~~h~~~V~sl~~spdg~~L 744 (842)
.|++|++||+.+++++..+.+...|.++.++++ .++ .+.++.|++||+.+. +.+..+.. ....+++++ .++
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~-~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIV-VSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp STTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEE-EEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred CccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEE-EEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 899999999999999999998899999999886 333 345899999999987 55554443 444566777 666
Q ss_pred EEE--e-CCeEEEEEcCCCCCc------------e-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCe-EEEEECCCCeE
Q 003177 745 ASV--S-DELVRVWSIGSGSKG------------E-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYET-LELWNMTENKT 807 (842)
Q Consensus 745 asg--s-Dg~I~IwDl~s~~~~------------~-~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~-I~Iwdl~~~~~ 807 (842)
+++ + ||.|++||+.++... . ++..+.+|...|.+++|+|++.+|++++.|++ |+|||+.+++.
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 664 4 999999999875310 1 26778899999999999999999999999998 99999999988
Q ss_pred E-EEc-c-CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 808 L-TLS-A-HDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 808 ~-~~~-~-h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+ .+. + |...|.+++|+|++++|++++.|++|+|||
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 7 554 4 999999999999999999999999999996
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=2.1e-25 Score=251.59 Aligned_cols=277 Identities=10% Similarity=0.111 Sum_probs=226.5
Q ss_pred ccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003177 507 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 586 (842)
Q Consensus 507 l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~v 586 (842)
+.....++++++.++.|.+|........ .......+.+|.+.|.+++|++++.++++++.|+.|++
T Consensus 130 ~s~~~~~~~~~~~~~~i~~~d~~~g~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~ 195 (433)
T 3bws_A 130 FIDNTRLAIPLLEDEGMDVLDINSGQTV--------------RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHV 195 (433)
T ss_dssp ESSSSEEEEEBTTSSSEEEEETTTCCEE--------------EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEE
T ss_pred EeCCCeEEEEeCCCCeEEEEECCCCeEe--------------eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEE
Confidence 3444567888888889999965432100 00011135689999999999999999999999999999
Q ss_pred EecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEe
Q 003177 587 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 665 (842)
Q Consensus 587 wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 665 (842)
||+.+++.+..+..|...+.+++|+|+++++++++ .|+.|++||+.++.. +..+.. ...+.+++|+|++..+++++.
T Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~g~~l~~~~~ 273 (433)
T 3bws_A 196 FDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-IGLPRGLLLSKDGKELYIAQF 273 (433)
T ss_dssp EETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCC-CSEEEEEEECTTSSEEEEEEE
T ss_pred EECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecC-CCCceEEEEcCCCCEEEEEEC
Confidence 99999999999989999999999999999886554 799999999987643 455544 456999999999886665443
Q ss_pred -------CCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEE-EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEE
Q 003177 666 -------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQGHKNQVHSVCW 737 (842)
Q Consensus 666 -------~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~-s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~ 737 (842)
.|+.|++||+.+++.+..+.+...+.+++|+|+++.++++ +.++.|++||+.+++.+..+. +...+.+++|
T Consensus 274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~ 352 (433)
T 3bws_A 274 SASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIAL 352 (433)
T ss_dssp ESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEE
T ss_pred CCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEE
Confidence 5889999999999988888777789999999999876554 678999999999998888776 7788999999
Q ss_pred cCCCCEEEEEe-C---------------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEE
Q 003177 738 NTSGEYLASVS-D---------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELW 800 (842)
Q Consensus 738 spdg~~Lasgs-D---------------g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~-dg~I~Iw 800 (842)
+|++++|++++ + |.|++||+.++ +.+..+.. ...+.+++|+|++++|++++. |+.|++|
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVY 428 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEE
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEE
Confidence 99999888876 2 49999999887 66666665 567899999999999998886 9999999
Q ss_pred ECCC
Q 003177 801 NMTE 804 (842)
Q Consensus 801 dl~~ 804 (842)
++..
T Consensus 429 ~~~~ 432 (433)
T 3bws_A 429 RRDG 432 (433)
T ss_dssp EETT
T ss_pred EecC
Confidence 9864
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.6e-26 Score=251.19 Aligned_cols=264 Identities=11% Similarity=0.091 Sum_probs=201.8
Q ss_pred cCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003177 508 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 587 (842)
Q Consensus 508 ~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vw 587 (842)
...+.++++|+.|+.|++|...+.. . +..+. ...|.++.|+|+ +++++.|++|++|
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~----------------~---~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w 100 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSK----------------T---ITTIT--TPNPRTGGEHPA---IISRGPCNRLLLL 100 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSS----------------C---EEEEE--EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCc----------------E---EEEEe--cCCceeeeeCCc---eEEecCCCeEEEE
Confidence 3456789999999999999765431 1 11111 355778888888 9999999999999
Q ss_pred ecC---------CCeEEEEec-cCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCceeeEe-ecCccceEEEEEc
Q 003177 588 CTE---------SFTVKSTLE-EHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFH 654 (842)
Q Consensus 588 d~~---------t~~~~~~l~-~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~t~~~~i~~~-~~h~~~V~sl~fs 654 (842)
+.. +++.+..+. .|.+.|.+++|+| ++.+|++++.||+|++||++++.. +... ..|...|.+++|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~ 179 (343)
T 3lrv_A 101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLH 179 (343)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEEC
T ss_pred EccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEEC
Confidence 665 455444443 6778999999999 999999999999999999998765 4444 4456689999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCcee-eEEee--cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeC---C
Q 003177 655 PSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---H 728 (842)
Q Consensus 655 pdg~~llasgs~Dg~I~vwDl~t~~~i-~~~~~--~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~---h 728 (842)
|++. +|++|+.||.|++||+++++.+ ..+.. ...|.+++|+|++.+|++++ ++.|++||+++.+.+..+.. |
T Consensus 180 pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~ 257 (343)
T 3lrv_A 180 KDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIP 257 (343)
T ss_dssp TTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-
T ss_pred CCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccc
Confidence 9976 7779999999999999999877 56654 67899999999999999999 55999999998866544432 3
Q ss_pred CCCE--EEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC---CCCEEEEEEcCCeEEEEE
Q 003177 729 KNQV--HSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP---TFPSLLVIGCYETLELWN 801 (842)
Q Consensus 729 ~~~V--~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~sp---dg~~L~sgs~dg~I~Iwd 801 (842)
...+ .+++|+|++++|++++ |+.|+||++...... ... .++..++|.+ +...+++++.|+.+.++-
T Consensus 258 ~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 258 EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--WTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp ----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS--EEE-----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred cccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc--eEe-----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 3334 3699999999999966 889999999765321 111 4567788888 888999999999888876
Q ss_pred CCCC
Q 003177 802 MTEN 805 (842)
Q Consensus 802 l~~~ 805 (842)
....
T Consensus 331 ~~~~ 334 (343)
T 3lrv_A 331 KTND 334 (343)
T ss_dssp ECSS
T ss_pred ecCC
Confidence 4433
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=6.2e-25 Score=238.84 Aligned_cols=284 Identities=13% Similarity=0.120 Sum_probs=198.2
Q ss_pred eeeEEEEecCCCCC----eEEEEEcCCCC---EEEEEECCCcEEEEecCCC---eEEEEeccCCCCeEEEEEcCCCCEEE
Q 003177 549 TFTEFQLIPASTSK----VESCHFSPDGK---LLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLA 618 (842)
Q Consensus 549 ~~~~i~~l~gH~~~----V~sv~fSpdg~---~Lasgs~Dg~I~vwd~~t~---~~~~~l~~h~~~I~~l~fspdg~~La 618 (842)
.+..+..|+...+. |.++-|-..|- .|+++++ ..|++|+..++ ++++++.+|..+|..|.|.||..-|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 24 NLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCE
T ss_pred eeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCccccee
Confidence 34455555544432 45565644332 5677765 68999999988 89999999999999999999744333
Q ss_pred E-EeCC---CeEEEEEcCCC--C-ceeeEeecCccceEEEEEcCCCCcEEEEEe--CCCcEEEEEC-CCCceeeEEee-c
Q 003177 619 T-SSAD---RTVRVWDTENP--D-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSI-NNGSCAGVFKC-Q 687 (842)
Q Consensus 619 t-gs~D---g~I~IWDl~t~--~-~~i~~~~~h~~~V~sl~fspdg~~llasgs--~Dg~I~vwDl-~t~~~i~~~~~-~ 687 (842)
. +-.. +.|+..-+... . .......+|...|.++ ++ ..++.+++ .|+.|++|++ .+++.+..+.. .
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~-g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TK-RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TT-TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CC-CcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 2 2111 11211111111 0 1122223455555554 44 44665543 5999999999 44777666554 5
Q ss_pred CCeeEEEEeC---CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC---CCEEEEEEcCCCCEE------------EEEe-
Q 003177 688 SGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYL------------ASVS- 748 (842)
Q Consensus 688 ~~i~~v~~sp---~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~---~~V~sl~~spdg~~L------------asgs- 748 (842)
..+..++|++ ++..|++++.|++|+|||+++++++.++.+|. ..+.+++|+|+|.++ ++|+
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence 5688889998 77999999999999999999999999998754 367788999999987 4456
Q ss_pred CCeEEEEEcCCCCCceeEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCee-EEE
Q 003177 749 DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS-SLA 821 (842)
Q Consensus 749 Dg~I~IwDl~s~~~~~~i~~~-----~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~-sla 821 (842)
|++|++||..++ .++..+ .+|...+.+..++ +.++++++.|++|+|||+.+++++ ++.+|...+. .++
T Consensus 259 D~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~va 333 (356)
T 2w18_A 259 VFQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK 333 (356)
T ss_dssp CEEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEE
T ss_pred CcEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence 889999999887 555443 2444444444444 778999999999999999999988 6677877655 689
Q ss_pred EeCCCCEEEEEeCCCcEEEcC
Q 003177 822 ASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 822 ~spdg~~Lasgs~DG~V~IWd 842 (842)
|+|||++|++|+.|++|+|||
T Consensus 334 fSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 334 WSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp ECSSSSEEEEECTTSCEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEec
Confidence 999999999999999999997
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=3.3e-25 Score=251.16 Aligned_cols=265 Identities=13% Similarity=0.078 Sum_probs=217.5
Q ss_pred EEecCCCCCeEEEEEcC--------------CCCEEEEEECC------CcEEEEecCCCeEEEEeccCCCCeEEEEEcCC
Q 003177 554 QLIPASTSKVESCHFSP--------------DGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 613 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSp--------------dg~~Lasgs~D------g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspd 613 (842)
..+.+|...|.++++++ .+..|+.++.+ +.|++||++. .....+..|...|.+++|+||
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence 45678888888887775 15566666654 7999999975 446677789999999999999
Q ss_pred CCEEEEEeCCC---eEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCceeeEEeecC
Q 003177 614 LSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQS 688 (842)
Q Consensus 614 g~~Latgs~Dg---~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~--I~vwDl~t~~~i~~~~~~~ 688 (842)
+++|++++.++ .|++||+.++.. ..+..|...+.+++|+|+|..++++++.++. |++||+.++++.....+..
T Consensus 190 g~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~ 267 (415)
T 2hqs_A 190 GSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS 267 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS
T ss_pred CCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC
Confidence 99999999885 999999998653 4567788899999999999988878876665 9999999988765555567
Q ss_pred CeeEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C---CeEEEEEcCCCC
Q 003177 689 GATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGS 761 (842)
Q Consensus 689 ~i~~v~~sp~g~~l~~~s~d-g--~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D---g~I~IwDl~s~~ 761 (842)
.+.+++|+|++..|++++.+ + .|++||+.+++. ..+..+...+.+++|+|+|++|++++ + ..|++||+.++.
T Consensus 268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 79999999999999988864 4 788889988764 34455777899999999999999877 4 489999998873
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEEccCCCCeeEEEEeCCCC
Q 003177 762 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNG 827 (842)
Q Consensus 762 ~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg---~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~ 827 (842)
. ..+..+. .+.+++|+|+|++|++++.++ .|++||+.++....+..|.+.|.+++|+|...
T Consensus 347 ---~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 347 ---V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ---E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred ---E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence 3 3344443 899999999999999998877 89999999888888999999999999999654
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=1.2e-25 Score=252.60 Aligned_cols=237 Identities=11% Similarity=0.110 Sum_probs=178.6
Q ss_pred cCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--------CCCEEEEEE
Q 003177 508 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--------DGKLLATGG 579 (842)
Q Consensus 508 ~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSp--------dg~~Lasgs 579 (842)
.....++++|+.|++|++|...... ......+..+.+|.+.|.+|+|+| |+++||+|+
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~--------------~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNET--------------IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTE--------------EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCc--------------cceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 3445689999999999999654321 112234556789999999999998 889999999
Q ss_pred CCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCcee--------------------
Q 003177 580 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSL-------------------- 638 (842)
Q Consensus 580 ~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~t~~~~i-------------------- 638 (842)
.|++|+|||+.++..+..+..|...|.+++|+|++ .+|++++.|++|++||+.++....
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 99999999999988888888899999999999987 479999999999999998754311
Q ss_pred ----eEeecCccceEEEEEc-CCCCcEEEEEeCCCcEEEEECCCCceeeEEeec-------------------CCeeEEE
Q 003177 639 ----RTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQMR 694 (842)
Q Consensus 639 ----~~~~~h~~~V~sl~fs-pdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-------------------~~i~~v~ 694 (842)
....+|...|.++.|+ +++. .+++++.|+++++||+..++....+... .......
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC 322 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCE
T ss_pred ceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEE
Confidence 1124677889999997 5655 6779999999999999877654443211 1122233
Q ss_pred EeC-CCCE-EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003177 695 FQP-RLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 759 (842)
Q Consensus 695 ~sp-~g~~-l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s 759 (842)
+++ .++. +++++.||.|++||+.++.+...+..|...|.+++|+|||++|++++++.+.+|.+..
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~g 389 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLMG 389 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEGG
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEeC
Confidence 444 3444 4556679999999999998888888899999999999999999999988888887643
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=5.9e-25 Score=249.12 Aligned_cols=274 Identities=15% Similarity=0.168 Sum_probs=220.2
Q ss_pred CCCeEEEEEcCCCC-EEEEEE----CCC----cEEEEec--CCCeEE--EEeccCCCCeEEEEEcC--------------
Q 003177 560 TSKVESCHFSPDGK-LLATGG----HDK----KAVLWCT--ESFTVK--STLEEHTQWITDVRFSP-------------- 612 (842)
Q Consensus 560 ~~~V~sv~fSpdg~-~Lasgs----~Dg----~I~vwd~--~t~~~~--~~l~~h~~~I~~l~fsp-------------- 612 (842)
...|...+|++.|. ++++|+ .|| .|+|||+ .+++.+ ..+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 34677888888775 666776 467 8999999 888877 55888988888877764
Q ss_pred CCCEEEEEeCC------CeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCceeeE
Q 003177 613 SLSRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGV 683 (842)
Q Consensus 613 dg~~Latgs~D------g~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D---g~I~vwDl~t~~~i~~ 683 (842)
.+..|++++.+ +.|++||++... ...+.+|...|.+++|+|+|+.++ +++.+ ..|++||+.++++...
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~--~~~l~~~~~~v~~~~~Spdg~~la-~~s~~~~~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYN--QFVVHRSPQPLMSPAWSPDGSKLA-YVTFESGRSALVIQTLANGAVRQV 218 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCS--CEEEEEESSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCC--CEEEeCCCCcceeeEEcCCCCEEE-EEEecCCCcEEEEEECCCCcEEEe
Confidence 25667666654 799999998533 577788999999999999988555 55555 4999999999988766
Q ss_pred EeecCCeeEEEEeCCCCEEEE-EEcCC--eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEE
Q 003177 684 FKCQSGATQMRFQPRLGRILA-AAIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWS 756 (842)
Q Consensus 684 ~~~~~~i~~v~~sp~g~~l~~-~s~dg--~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwD 756 (842)
..+...+.+++|+|++..|+. ++.++ .|++||+.+++. ..+..|...+.+++|+|||++|++++ ++ .|++||
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d 297 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 297 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence 666778999999999998884 44454 599999998876 56677888999999999999988877 34 788889
Q ss_pred cCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEe
Q 003177 757 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 757 l~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d---g~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs 833 (842)
+.++. ...+..+...+.+++|+|+|++|++++.+ ..|++||+.+++...+..|. .+.+++|+|||++|++++
T Consensus 298 ~~~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s 372 (415)
T 2hqs_A 298 INGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSS 372 (415)
T ss_dssp TTSSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEE
T ss_pred CCCCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEE
Confidence 88763 23444566788999999999999998875 48999999999887777665 899999999999999888
Q ss_pred CCC---cEEEcC
Q 003177 834 HDK---CVKIWK 842 (842)
Q Consensus 834 ~DG---~V~IWd 842 (842)
.|+ .|++||
T Consensus 373 ~~~~~~~l~~~d 384 (415)
T 2hqs_A 373 SQGMGSVLNLVS 384 (415)
T ss_dssp EETTEEEEEEEE
T ss_pred cCCCccEEEEEE
Confidence 777 688875
No 129
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=6e-23 Score=224.02 Aligned_cols=268 Identities=10% Similarity=0.029 Sum_probs=217.6
Q ss_pred CCeEEEEEcCCCCEEEEEEC-------CCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcC
Q 003177 561 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE 632 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~-------Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~ 632 (842)
..+..++|+|++++|++++. ++.|.+||..+++.+..+... ..+.+++|++++++++++ ..++.|.+||+.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 45889999999999888874 568999999999988887643 457899999999966555 557999999999
Q ss_pred CCCceeeEeecCcc---------ceEEEEEcCCCCcEEEEE-eCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCE
Q 003177 633 NPDYSLRTFTGHST---------TVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGR 701 (842)
Q Consensus 633 t~~~~i~~~~~h~~---------~V~sl~fspdg~~llasg-s~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ 701 (842)
+++. +..+..+.. .+.+++|+|+++.+++++ +.++.|.+||+.+++.+..+. ....+..++|+|+++.
T Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 8764 444444332 278999999998777666 458899999999999988887 4555889999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeC----CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003177 702 ILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNK 775 (842)
Q Consensus 702 l~~~s~dg~I~IwDl~t~~~~~~l~~----h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 775 (842)
+++++.++.|.+||+.+++.+..+.. +...+.+++|+|+++++++++ ++.|.+||+.++ +.+..+....
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~-- 273 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE-- 273 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS--
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC--
Confidence 99999999999999999988877764 555788999999999887776 589999999887 4555554433
Q ss_pred eEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCC
Q 003177 776 FHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 835 (842)
Q Consensus 776 I~sv~~spdg~~L~sgs-~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~D 835 (842)
...++|+|+++++++++ .++.|.+||+.+++.+........+.+++|+|++++|+++..+
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 25689999999887777 5789999999999988655556688999999999977766654
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=2.3e-24 Score=234.33 Aligned_cols=253 Identities=10% Similarity=0.044 Sum_probs=179.6
Q ss_pred cccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEE-EECCC---cEEEEecCCC----eEEEEeccCCCCeEEEEEcCC
Q 003177 542 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT-GGHDK---KAVLWCTESF----TVKSTLEEHTQWITDVRFSPS 613 (842)
Q Consensus 542 ~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Las-gs~Dg---~I~vwd~~t~----~~~~~l~~h~~~I~~l~fspd 613 (842)
|+..++..++.+.++.+|..+|..+.|.||-.-|++ +-..= .|+..-+... .....-.+|...|.++ ++
T Consensus 68 w~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~ 144 (356)
T 2w18_A 68 WKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TK 144 (356)
T ss_dssp EEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TT
T ss_pred cccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CC
Confidence 344445566778888888888888888886443222 21111 1111111111 1111113344444443 45
Q ss_pred CCEEEEEe--CCCeEEEEEcCCCCceeeEeecCccceEEEEEcC--CCCcEEEEEeCCCcEEEEECCCCceeeEEeec--
Q 003177 614 LSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-- 687 (842)
Q Consensus 614 g~~Latgs--~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-- 687 (842)
++++.+++ .|+.|++|++......+..+.+|...+..++|++ ....+|++++.|++|+|||+++++++.++..+
T Consensus 145 g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~ 224 (356)
T 2w18_A 145 RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS 224 (356)
T ss_dssp TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-
T ss_pred CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc
Confidence 55555543 5899999999654555777888999999999998 22458889999999999999999999999742
Q ss_pred --CCeeEEEEeCCCCEE------------EEEEcCCeEEEEECCCCeEEEEE-----eCCCCCEEEEEEcCCCCEEEEEe
Q 003177 688 --SGATQMRFQPRLGRI------------LAAAIENYISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGEYLASVS 748 (842)
Q Consensus 688 --~~i~~v~~sp~g~~l------------~~~s~dg~I~IwDl~t~~~~~~l-----~~h~~~V~sl~~spdg~~Lasgs 748 (842)
..+.+++|+|++..+ ++++.|++|++||..+++.+..+ .+|...+.+..++ +.++++++
T Consensus 225 ~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS 302 (356)
T 2w18_A 225 YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAIL 302 (356)
T ss_dssp --CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEE
T ss_pred ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEc
Confidence 347788999998876 45677899999999999887765 3676666555554 88899998
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecCCCceE-EEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 749 -DELVRVWSIGSGSKGECIHELSCTGNKFH-SCVFHPTFPSLLVIGCYETLELWNM 802 (842)
Q Consensus 749 -Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~-sv~~spdg~~L~sgs~dg~I~Iwdl 802 (842)
|++|+|||+.++ +++.++.+|...+. .++|+|+|++|++|+.|++|+|||+
T Consensus 303 ~DgTIkIWDl~tG---k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 303 TSGTIAIWDLLLG---QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTSCEEEEETTTC---SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCcEEEEECCCC---cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999999998 78999988877655 5899999999999999999999995
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=4.3e-23 Score=223.84 Aligned_cols=274 Identities=7% Similarity=0.129 Sum_probs=206.5
Q ss_pred EEEcCCCCE-EEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeeEeec
Q 003177 566 CHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG 643 (842)
Q Consensus 566 v~fSpdg~~-Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~t~~~~i~~~~~ 643 (842)
..|.+++.+ +++++.++.|.+||+.+++.+..+..+...+ +++|+|++++|++++. ++.|++||+.++......+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345665555 6777889999999999999988887777777 9999999997777666 889999999987653556666
Q ss_pred CccceEEEEEcCCCCcEEEEEeCC-C--cEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEc-CCe-EEEEECCC
Q 003177 644 HSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY-ISILDVET 718 (842)
Q Consensus 644 h~~~V~sl~fspdg~~llasgs~D-g--~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~-dg~-I~IwDl~t 718 (842)
+...+.+++|+|+++.++ ++..+ + .|.+||+.+++.+..+.......+++|+|+++++++++. ++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 666666699999988666 54444 3 899999999999988888788899999999987666654 578 99999875
Q ss_pred CeEE----EEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003177 719 QVCR----LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 792 (842)
Q Consensus 719 ~~~~----~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs 792 (842)
...+ .........+.+++|+|+|++++++. ++.|++||+.++.....+..+.. ...+..++|+|+|++|++++
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEEC
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEE
Confidence 3222 12223456689999999999776655 78999999988743222555553 46678899999999887776
Q ss_pred c-CCeEEEEECCCCeEE---EEccC----CC---CeeEEEEeCCCCEEEEEe-CCCcEEEcC
Q 003177 793 C-YETLELWNMTENKTL---TLSAH----DK---LVSSLAASTVNGMVASAS-HDKCVKIWK 842 (842)
Q Consensus 793 ~-dg~I~Iwdl~~~~~~---~~~~h----~~---~V~sla~spdg~~Lasgs-~DG~V~IWd 842 (842)
. ++.|.+||+.+++.. .+..+ .. .+..++|+||+++|++++ .++.|.|||
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 4 568999999998873 11111 22 235689999999886655 466999996
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=4.8e-23 Score=223.24 Aligned_cols=266 Identities=9% Similarity=0.133 Sum_probs=197.0
Q ss_pred EEEEEECCCcEEEEecC-CC--eEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEEcC--CCCc-eeeEeecCcc
Q 003177 574 LLATGGHDKKAVLWCTE-SF--TVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTE--NPDY-SLRTFTGHST 646 (842)
Q Consensus 574 ~Lasgs~Dg~I~vwd~~-t~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-g~I~IWDl~--t~~~-~i~~~~~h~~ 646 (842)
++++++.|+.|++||+. ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|+++ ++.. .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34444779999999985 33 333333 577789999999999999998887 999999998 4442 223344333
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEECC---CCceeeEEeecCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCC-CeE
Q 003177 647 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVET-QVC 721 (842)
Q Consensus 647 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~---t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s-~dg~I~IwDl~t-~~~ 721 (842)
.+.+++|+|++..+++++..++.|.+||+. ..+.+..+.....+.+++|+|+++++++++ .++.|.+||+.+ ++.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 789999999999777777778999999994 444555555666789999999999998888 789999999987 644
Q ss_pred EE----EEeC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC-CceeEEEee---cC---CCceEEEEEeCCCCE
Q 003177 722 RL----KLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELS---CT---GNKFHSCVFHPTFPS 787 (842)
Q Consensus 722 ~~----~l~~-h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~-~~~~i~~~~---~~---~~~I~sv~~spdg~~ 787 (842)
.. .+.. ....+.+++|+|++++|++++ ++.|.+|++.... .......+. .. ...+..++|+|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 32 2232 345788999999999776655 8899999996421 112222222 11 235678999999998
Q ss_pred EEEEE-cCCeEEEEECC--CC--eEE-EEccCCCCeeEEEEeCCCCEEEEEe-CCCcEEEcC
Q 003177 788 LLVIG-CYETLELWNMT--EN--KTL-TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 842 (842)
Q Consensus 788 L~sgs-~dg~I~Iwdl~--~~--~~~-~~~~h~~~V~sla~spdg~~Lasgs-~DG~V~IWd 842 (842)
|+++. .++.|.+||+. ++ +.+ .+..+. .+.+++|+|++++|++++ .|+.|.||+
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 88666 67899999998 33 333 333343 489999999999888887 689999993
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=5.1e-23 Score=241.46 Aligned_cols=268 Identities=9% Similarity=0.063 Sum_probs=215.2
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--CCCCceeeEeecC
Q 003177 567 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT--ENPDYSLRTFTGH 644 (842)
Q Consensus 567 ~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl--~t~~~~i~~~~~h 644 (842)
+|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+||+++|++++.|++|++||+ .+.. ++..+. +
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-~~~~i~-~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-KVAEIK-I 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-EEEEEE-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-EEEEEe-c
Confidence 3788999999999999999999999999999874433 899999999999999999999999999 6644 355555 4
Q ss_pred ccceEEEEEcC----CCCcEEEEEeCCCcEEEEECCCCceeeEEeec------------CCeeEEEEeCCCCEEEEEE-c
Q 003177 645 STTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAA-I 707 (842)
Q Consensus 645 ~~~V~sl~fsp----dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~------------~~i~~v~~sp~g~~l~~~s-~ 707 (842)
...+..++|+| +|+.+++++..+++|.+||..+++++..+... ..+..+.++|++..++++. .
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 55689999999 99877766667999999999999998887642 2578999999887766555 5
Q ss_pred CCeEEEEECCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec----CCCceEEE
Q 003177 708 ENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSC 779 (842)
Q Consensus 708 dg~I~IwDl~t~~~~~--~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~----~~~~I~sv 779 (842)
++.|.+||+.+.+.+. .+. +...+.+++|+|+|++|++++ +++|.+||+.++ +++..+.. |.+....+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE
T ss_pred CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc
Confidence 7999999998764332 443 566788999999999877665 889999999988 66666654 33333333
Q ss_pred EEeCCCCEEEEEE--cCCeEEEEECCC-------CeEE-EEccCCCCeeEEEEeCCCCEEEEEe-------CCCcEEEcC
Q 003177 780 VFHPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASAS-------HDKCVKIWK 842 (842)
Q Consensus 780 ~~spdg~~L~sgs--~dg~I~Iwdl~~-------~~~~-~~~~h~~~V~sla~spdg~~Lasgs-------~DG~V~IWd 842 (842)
++|++..+++++ .+++|.+||+.+ .+++ ++..|...+..|+|+|++++|++++ .+++|.|||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 578754455444 478999999988 7776 7778888899999999999999987 377999997
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2.5e-23 Score=251.89 Aligned_cols=276 Identities=14% Similarity=0.097 Sum_probs=213.7
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CC-----cEEEEecCCCeEEEEeccCCC------------------------CeEEEE
Q 003177 560 TSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLEEHTQ------------------------WITDVR 609 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~-Dg-----~I~vwd~~t~~~~~~l~~h~~------------------------~I~~l~ 609 (842)
...|.+++|||||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456999999999999999998 88 899999999988777765543 388999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCC-ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecC
Q 003177 610 FSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 688 (842)
Q Consensus 610 fspdg~~Latgs~Dg~I~IWDl~t~~-~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~ 688 (842)
|+|||++|++++. +.|++||+.++. .....+..|...+.+++|+|||+.++ .++ ++.|++||+.+++.........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la-~~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVS-FIR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEE-EEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEE-EEe-CCcEEEEecCCCCEEEeccCCc
Confidence 9999999999986 999999998762 01455677888899999999998655 444 5699999999887765544322
Q ss_pred C-----------------eeEEEEeCCCCEEEEEEcCC---------------------------------eEEEEECCC
Q 003177 689 G-----------------ATQMRFQPRLGRILAAAIEN---------------------------------YISILDVET 718 (842)
Q Consensus 689 ~-----------------i~~v~~sp~g~~l~~~s~dg---------------------------------~I~IwDl~t 718 (842)
. +..+.|+|++++|++++.|+ .|.+||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 2 47899999999999988765 789999998
Q ss_pred -CeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe------CCeEEEEEcCCCCCceeEEEeecCCC----ceEEEEEeCCC
Q 003177 719 -QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGECIHELSCTGN----KFHSCVFHPTF 785 (842)
Q Consensus 719 -~~~~~~l~--~h~~~V~sl~~spdg~~Lasgs------Dg~I~IwDl~s~~~~~~i~~~~~~~~----~I~sv~~spdg 785 (842)
++...... .|...+.+++| |||++|+++. +..|++||+.++. +...+..+.. .+..++|+|+|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---QRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---EEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---eEEEEEcCCCCcCCcCCceEECCCC
Confidence 77654433 37778999999 9999988764 3479999999873 4443333332 44678999999
Q ss_pred CEEEEEEcCCeEEEEECC-CCeEEEEccCCCCeeEE-EEeCCCCEEE-EEeCCC--cEEEcC
Q 003177 786 PSLLVIGCYETLELWNMT-ENKTLTLSAHDKLVSSL-AASTVNGMVA-SASHDK--CVKIWK 842 (842)
Q Consensus 786 ~~L~sgs~dg~I~Iwdl~-~~~~~~~~~h~~~V~sl-a~spdg~~La-sgs~DG--~V~IWd 842 (842)
+++++++.++.++||.+. ++....+..|...|..+ .|+|+++.|+ +++.|+ .++||+
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred eEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 988888888866666554 23355777888888887 5999998775 455555 888884
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=9e-23 Score=247.03 Aligned_cols=272 Identities=11% Similarity=0.066 Sum_probs=204.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEecCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceee
Q 003177 562 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 639 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~ 639 (842)
.|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|++||+.++.. ..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EE
Confidence 4889999999999999986 999999999873 3445677888999999999999999987 46899999987543 33
Q ss_pred EeecCccc----------------eEEEEEcCCCCcEEEEEeCCC--------------------------------cEE
Q 003177 640 TFTGHSTT----------------VMSLDFHPSKEDLLCSCDNNS--------------------------------EIR 671 (842)
Q Consensus 640 ~~~~h~~~----------------V~sl~fspdg~~llasgs~Dg--------------------------------~I~ 671 (842)
....+... +.+++|+|||+.++++...++ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 33333322 478999999987775544321 789
Q ss_pred EEECCC-CceeeEEe---ecCCeeEEEEeCCCCEEEEEEc-----CCeEEEEECCCCeEEEEEeCCCC----CEEEEEEc
Q 003177 672 YWSINN-GSCAGVFK---CQSGATQMRFQPRLGRILAAAI-----ENYISILDVETQVCRLKLQGHKN----QVHSVCWN 738 (842)
Q Consensus 672 vwDl~t-~~~i~~~~---~~~~i~~v~~sp~g~~l~~~s~-----dg~I~IwDl~t~~~~~~l~~h~~----~V~sl~~s 738 (842)
+||+.+ ++...... +...+..++| |+++.|++++. +..|++||+.++++...+..+.. .+.+++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999998 77655432 2345889999 99999998775 46799999999987777665543 45689999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCC---eEEEEECCC-Ce-EEEEc
Q 003177 739 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE---TLELWNMTE-NK-TLTLS 811 (842)
Q Consensus 739 pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv-~~spdg~~L~sgs~dg---~I~Iwdl~~-~~-~~~~~ 811 (842)
|||+++++++ |+.++||.+.... . ...+..+...+..+ .|+|+++.|++.+.++ .++||++.. +. ...+.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred CCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 9999888877 8888888776322 3 56677777788887 5999999887666544 788998753 44 33444
Q ss_pred cCCCCeeEEEEeCCCCEEEEEeCC----CcEEEc
Q 003177 812 AHDKLVSSLAASTVNGMVASASHD----KCVKIW 841 (842)
Q Consensus 812 ~h~~~V~sla~spdg~~Lasgs~D----G~V~IW 841 (842)
. ...+.+++|+||+++|+....+ ..+.+|
T Consensus 423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 3 6778999999999988766443 345554
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=7.2e-23 Score=215.84 Aligned_cols=253 Identities=11% Similarity=0.092 Sum_probs=195.7
Q ss_pred EEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CCceeeEeecC-ccceEEEEEc
Q 003177 577 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGH-STTVMSLDFH 654 (842)
Q Consensus 577 sgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t-~~~~i~~~~~h-~~~V~sl~fs 654 (842)
.++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|++||+.+ +.. ......+ ...|.+++|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-EKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-EECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-eEeccccccccccceEEC
Confidence 3467899999999998876 4456889999999999999999986 78999999998 553 4444444 4678999999
Q ss_pred CCCCcEEEEEe-CC--CcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEE-EEEcCCeEEEEECC--CCeEEEEEeCC
Q 003177 655 PSKEDLLCSCD-NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDVE--TQVCRLKLQGH 728 (842)
Q Consensus 655 pdg~~llasgs-~D--g~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~-~~s~dg~I~IwDl~--t~~~~~~l~~h 728 (842)
|++..+++++. .+ ..|.+|++.+++ ...+.....+..++|+|++..++ ++..++.+.||+++ ++. ...+..+
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 171 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHG 171 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCS
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccC
Confidence 99886654442 23 455555555554 34444455688999999999887 67788988888853 443 4556668
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----------C
Q 003177 729 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----------E 795 (842)
Q Consensus 729 ~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d-----------g 795 (842)
...+.+++|+|++++|++++ ++.++||++.... ..+..+..+...+..++|+|++++|++++.+ .
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred CCccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 88999999999999887665 7889999886321 3456666677788999999999999988876 4
Q ss_pred eEEEEECCCCeEE---EEccCCCCeeEEEEeCCCCEEEEEeCCC
Q 003177 796 TLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDK 836 (842)
Q Consensus 796 ~I~Iwdl~~~~~~---~~~~h~~~V~sla~spdg~~Lasgs~DG 836 (842)
.|++||+.+++.. .+..|...|.+++|+|++++|++++.|.
T Consensus 250 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 250 RVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 6999999988654 3447888999999999999998887664
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=7.1e-22 Score=214.03 Aligned_cols=295 Identities=11% Similarity=0.074 Sum_probs=207.2
Q ss_pred eEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECC-CcEEEEecC-
Q 003177 513 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTE- 590 (842)
Q Consensus 513 ~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~D-g~I~vwd~~- 590 (842)
++++++.|+.|.+|...... ....+.. ..|...+.+++|+|+|++|++++.+ +.|.+|++.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~----------------~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~ 69 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEG----------------ALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 69 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTS----------------CEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEeCCCCCeEEEEEECCCC----------------cEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecC
Confidence 34444678899999654311 1112222 2466789999999999999988887 999999997
Q ss_pred -CCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCC--ceeeEeecCccceEEEEEcCCCCcEEEEE
Q 003177 591 -SFT--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSC 664 (842)
Q Consensus 591 -t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~t~~--~~i~~~~~h~~~V~sl~fspdg~~llasg 664 (842)
+++ .+..+..+. .+.+++|+|++++|++++. ++.|.+||+..+. ..+..+. ....+.+++|+|+++.+++++
T Consensus 70 ~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~ 147 (343)
T 1ri6_A 70 DDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPA 147 (343)
T ss_dssp TTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEE
T ss_pred CCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEec
Confidence 544 344554444 7899999999998877765 8899999995221 1233333 334688999999998777666
Q ss_pred eCCCcEEEEECCC-CceeeE----Ee--ecCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCC--CeE--EEEEeC---C-
Q 003177 665 DNNSEIRYWSINN-GSCAGV----FK--CQSGATQMRFQPRLGRILAAA-IENYISILDVET--QVC--RLKLQG---H- 728 (842)
Q Consensus 665 s~Dg~I~vwDl~t-~~~i~~----~~--~~~~i~~v~~sp~g~~l~~~s-~dg~I~IwDl~t--~~~--~~~l~~---h- 728 (842)
..++.|++||+.+ ++.... +. ....+..++|+|+++++++++ .++.|.+||+.. ++. ...+.. .
T Consensus 148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 5899999999987 654332 22 234688899999999887776 689999999953 322 223321 1
Q ss_pred --CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--
Q 003177 729 --KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW-- 800 (842)
Q Consensus 729 --~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs-~dg~I~Iw-- 800 (842)
...+.+++|+|++++|+++. ++.|++||+... .....+..+..+.. +..++|+|++++|++++ .++.|.+|
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 23577899999999887554 889999999832 12245555554444 88999999999999888 57899999
Q ss_pred ECCCCeEE--EEccCCCCeeEEEEeCCCC
Q 003177 801 NMTENKTL--TLSAHDKLVSSLAASTVNG 827 (842)
Q Consensus 801 dl~~~~~~--~~~~h~~~V~sla~spdg~ 827 (842)
|..+++.. ..........+++|.++.+
T Consensus 307 d~~~g~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 307 VGEQGLLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp ETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred cCCCceeeEccccccCCCCeeEEEEcccC
Confidence 55566543 2222335677888887654
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.1e-21 Score=212.68 Aligned_cols=292 Identities=11% Similarity=0.083 Sum_probs=211.5
Q ss_pred CceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEec
Q 003177 511 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCT 589 (842)
Q Consensus 511 ~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~-Dg~I~vwd~ 589 (842)
..++++.+.++.|.+|+.... . ....+..+...+ +++|+|+|++|++++. ++.|++||+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~----------------~---~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~ 69 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTL----------------E---ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET 69 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTC----------------C---EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred CEEEEEecCCCeEEEEeCccc----------------c---eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence 355677778888998865332 1 123334455566 9999999997776665 889999999
Q ss_pred CCCeE-EEEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEe
Q 003177 590 ESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 665 (842)
Q Consensus 590 ~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg---~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 665 (842)
.+++. ...+..+..++.+++|+|++++|+++..++ .|.+||+.+++. +..+. +...+.+++|+|+++.+++++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~-~~~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 70 QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIP-IPYDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-EEEEE-CCTTEEEEEECTTSSCEEEEEE
T ss_pred CCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-EEEEE-CCCCccceEECCCCCEEEEEec
Confidence 99887 777777777666699999999999555553 899999987653 44444 3455799999999988888878
Q ss_pred CCCc-EEEEECCCCcee-----eEEeecCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeE---EEEEeCCCCCEEEE
Q 003177 666 NNSE-IRYWSINNGSCA-----GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC---RLKLQGHKNQVHSV 735 (842)
Q Consensus 666 ~Dg~-I~vwDl~t~~~i-----~~~~~~~~i~~v~~sp~g~~l~~~s-~dg~I~IwDl~t~~~---~~~l~~h~~~V~sl 735 (842)
.++. |.+|++.....+ ..+........++|+|+++++++++ .++.|.+||+.+++. +..+.. ...+.++
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~ 226 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTI 226 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCE
T ss_pred CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceE
Confidence 7788 999999864432 2223345688999999999877766 478999999998876 767764 4667899
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecC----CC---ceEEEEEeCCCCEEEEEEcC-CeEEEEECCCC
Q 003177 736 CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT----GN---KFHSCVFHPTFPSLLVIGCY-ETLELWNMTEN 805 (842)
Q Consensus 736 ~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~----~~---~I~sv~~spdg~~L~sgs~d-g~I~Iwdl~~~ 805 (842)
+|+|+|++|+++. ++.|.+||+.++.. ..+..+... .. ....++|+|++++|++++.+ +.|.+||+.+.
T Consensus 227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 9999999887765 67899999988732 113333322 11 22458999999999877765 59999999887
Q ss_pred eEEEEccCCCCeeEEEEeCCC
Q 003177 806 KTLTLSAHDKLVSSLAASTVN 826 (842)
Q Consensus 806 ~~~~~~~h~~~V~sla~spdg 826 (842)
..-.....+..-....++|++
T Consensus 306 ~~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 306 VVGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp EEEECTTCCCBSCEEECCCC-
T ss_pred cccceecccccCCeEEECCcc
Confidence 665554444333333344443
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=2.9e-22 Score=216.56 Aligned_cols=262 Identities=11% Similarity=0.067 Sum_probs=207.0
Q ss_pred CEEEEEECCCcEEEEecCCCeEEEEeccCCC--CeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeeEee-cC----
Q 003177 573 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT-GH---- 644 (842)
Q Consensus 573 ~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~--~I~~l~fspdg~~La-tgs~Dg~I~IWDl~t~~~~i~~~~-~h---- 644 (842)
.+|++++.++.|++||+.+++.+..+..... .+.+++|+|++++++ +++.++.|.+||+.+++. +..+. ++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCcccc
Confidence 4789999999999999999998887753322 588999999998765 555678999999988664 33333 22
Q ss_pred ccceEEEEEcCCCCcEEEEEe-----------CCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 003177 645 STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 713 (842)
Q Consensus 645 ~~~V~sl~fspdg~~llasgs-----------~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~I 713 (842)
...+.+++|+|+++.++++.. .++.|.+||+.+++.+..+.....+.+++|+|++++++++ ++.|++
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 226778999999886665531 4799999999999988888877778899999999988887 789999
Q ss_pred EECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC-----------------------eEEEEEcCCCCCceeEEE
Q 003177 714 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE-----------------------LVRVWSIGSGSKGECIHE 768 (842)
Q Consensus 714 wDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg-----------------------~I~IwDl~s~~~~~~i~~ 768 (842)
||+.+++.+..+..+.. ...+.|+|++.+|+... ++ .|.+||+.++... ...
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--Eee
Confidence 99999988877765431 11337899998776554 22 4689999887432 334
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 769 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 769 ~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+..+...+..++|+|++++|+++ ++.|++||+.+++.+........+.+++|+|++++|++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 45566778899999999998888 6899999999998875555556789999999999999999999999996
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1.2e-22 Score=214.07 Aligned_cols=238 Identities=14% Similarity=0.111 Sum_probs=187.0
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC-CeEEEEeccC-CCCeEEEEEcCCCCEEEEEe--CCCeEEEEE
Q 003177 555 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEH-TQWITDVRFSPSLSRLATSS--ADRTVRVWD 630 (842)
Q Consensus 555 ~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t-~~~~~~l~~h-~~~I~~l~fspdg~~Latgs--~Dg~I~IWD 630 (842)
.+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++....+..| ...|.+++|+|++++|++++ .++.+.||.
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence 4456788999999999999999987 78999999999 8777666565 47789999999999999998 345556655
Q ss_pred cCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEEC--CCCceeeEEeecCCeeEEEEeCCCCEEEEEEc-
Q 003177 631 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAI- 707 (842)
Q Consensus 631 l~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl--~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~- 707 (842)
++........+..+. .+.+++|+|++..++++++.++.+++|++ .+++..........+.+++|+|++..+++++.
T Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 193 (297)
T 2ojh_A 115 LPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR 193 (297)
T ss_dssp EETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT
T ss_pred EECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC
Confidence 543222244444443 48999999999988878888999999985 44555444445667999999999998887774
Q ss_pred CCeEEEEECC-CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C-----------CeEEEEEcCCCCCceeEEEeecCCC
Q 003177 708 ENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-----------ELVRVWSIGSGSKGECIHELSCTGN 774 (842)
Q Consensus 708 dg~I~IwDl~-t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D-----------g~I~IwDl~s~~~~~~i~~~~~~~~ 774 (842)
++.+.+|++. .+..+..+..|...+.+++|+|++++|++++ + +.|++||+.++.. ..+..+..+..
T Consensus 194 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~ 272 (297)
T 2ojh_A 194 TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-ETLFDLFGGQG 272 (297)
T ss_dssp TSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-EEEEEEEESTT
T ss_pred CCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc-eeeeccCCCCc
Confidence 8889999876 4555667777888899999999999998877 4 4699999987642 44555557788
Q ss_pred ceEEEEEeCCCCEEEEEEcCC
Q 003177 775 KFHSCVFHPTFPSLLVIGCYE 795 (842)
Q Consensus 775 ~I~sv~~spdg~~L~sgs~dg 795 (842)
.+..++|+|++++|++++.+.
T Consensus 273 ~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 273 TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TSCSCCBCTTSSEEEEEEECC
T ss_pred ccccceECCCCCEEEEEEecc
Confidence 899999999999999888764
No 141
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=4e-22 Score=235.07 Aligned_cols=267 Identities=9% Similarity=0.051 Sum_probs=206.7
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CCcEEEEecCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCC-
Q 003177 560 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA---DRTVRVWDTEN- 633 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~-Dg~I~vwd~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~t- 633 (842)
..+|++++|+|||++||+++. ||++.||++++++... +..|. ..|.+++|+|| +++++++. +....||.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 456999999999999999887 9999999997776654 44454 68999999999 77777765 45566665543
Q ss_pred -CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcC----
Q 003177 634 -PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---- 708 (842)
Q Consensus 634 -~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~d---- 708 (842)
..... .+..+ ..+...+|+|+++.++++++.++.+.+||+.++++........ .+++|+|+|+.+++++.+
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTE
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCC
Confidence 22222 33322 2345678999987766666666667799999988776666544 899999999999988876
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC--eEEEEEcCCCCCceeEEEeecCCCceEEEE-----
Q 003177 709 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCV----- 780 (842)
Q Consensus 709 g~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~----- 780 (842)
+.|++||+.+++.. .+..|...+..++|+|||++|+++. ++ .|++||+.++ ... .+..+...+..++
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~ 249 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAIT 249 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhcccc
Confidence 78999999988765 5677888999999999999999766 77 8999999887 344 5566666666666
Q ss_pred ---EeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCc---EEEcC
Q 003177 781 ---FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC---VKIWK 842 (842)
Q Consensus 781 ---~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~---V~IWd 842 (842)
|+|||..+++++.++.+++|++ ++... .+.+.|.+++|+ +++++++++.+.. |++||
T Consensus 250 ~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 250 WLGYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEEECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred ceeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999988888889999999999 66554 345778999999 9999998887754 55554
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=8.3e-23 Score=246.45 Aligned_cols=275 Identities=13% Similarity=0.147 Sum_probs=206.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCC---CeEEEEEcCCCCEEEEEeCC---------CeEEEE
Q 003177 562 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSAD---------RTVRVW 629 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~---~I~~l~fspdg~~Latgs~D---------g~I~IW 629 (842)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999998776 7899999999999988888877765 49999999999999999874 788999
Q ss_pred EcCCCCce-eeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCe-----------------
Q 003177 630 DTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA----------------- 690 (842)
Q Consensus 630 Dl~t~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i----------------- 690 (842)
|+.++... +....+|...+.+++|+|+|+.++++ + ++.|++||+.+++....... ...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~-~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI-F-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE-E-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEE-E-CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 99986531 11222344558899999999866644 4 47999999998887665543 2222
Q ss_pred -eEEEEeCCCCEEEEEEcCC----------------------------------eEEEEECCCCeEEEEEeCC------C
Q 003177 691 -TQMRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCRLKLQGH------K 729 (842)
Q Consensus 691 -~~v~~sp~g~~l~~~s~dg----------------------------------~I~IwDl~t~~~~~~l~~h------~ 729 (842)
.+++|+|+++.|++++.++ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 7899999999999887653 7999999988765556544 5
Q ss_pred CCEEEEEEcCCCCEEEEEe-C----CeEEEEEcCCCCCceeEEEeec-CCCce----EEEEEeCCCCEEEEE--EcCC--
Q 003177 730 NQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSGSKGECIHELSC-TGNKF----HSCVFHPTFPSLLVI--GCYE-- 795 (842)
Q Consensus 730 ~~V~sl~~spdg~~Lasgs-D----g~I~IwDl~s~~~~~~i~~~~~-~~~~I----~sv~~spdg~~L~sg--s~dg-- 795 (842)
..+.+++|+|||++|++.. . ..|++||+.++ .+...+.. +...+ ..++|+|||+.|++. ..++
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 331 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG---VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC---CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC---cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence 6789999999999887764 2 47999999887 33333322 22333 378999999987764 3455
Q ss_pred ----eEEEEE-CCCCe---EEEEccCCCCeeE-EEEeCCCCEEEEEeCC---CcEEEcC
Q 003177 796 ----TLELWN-MTENK---TLTLSAHDKLVSS-LAASTVNGMVASASHD---KCVKIWK 842 (842)
Q Consensus 796 ----~I~Iwd-l~~~~---~~~~~~h~~~V~s-la~spdg~~Lasgs~D---G~V~IWd 842 (842)
.|++|| ..++. ...+..+...+.. ++|+|||+.|+..+.+ +.++||+
T Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 577788 45555 4455444455554 6999999998766655 7888884
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2e-21 Score=234.09 Aligned_cols=275 Identities=12% Similarity=0.089 Sum_probs=207.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-----
Q 003177 559 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN----- 633 (842)
Q Consensus 559 H~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t----- 633 (842)
+...|.+++|||| +.++.+. ++.|++||+.+++.... ..+...+.+++|+|||++|+++ .|+.|++||+.+
T Consensus 80 ~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 80 DAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp --CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred cccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence 3467999999999 6666654 59999999998876544 4567779999999999999995 689999999987
Q ss_pred CCceeeEeecCccc--------------eEEEEEcCCCCcEEEEEe--------------------------------CC
Q 003177 634 PDYSLRTFTGHSTT--------------VMSLDFHPSKEDLLCSCD--------------------------------NN 667 (842)
Q Consensus 634 ~~~~i~~~~~h~~~--------------V~sl~fspdg~~llasgs--------------------------------~D 667 (842)
+.. ......+... +.+++|+|||+.+++++. .+
T Consensus 156 g~~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 156 SRA-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp CCC-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred CCc-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 553 3323333332 489999999987665541 34
Q ss_pred CcEEEEECCCCceeeEEe---ecCCeeEEEEeCCCCEEEEEEcCC-----eEEEEECCCC-eEEEEEeC-CCC---CEEE
Q 003177 668 SEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN-----YISILDVETQ-VCRLKLQG-HKN---QVHS 734 (842)
Q Consensus 668 g~I~vwDl~t~~~i~~~~---~~~~i~~v~~sp~g~~l~~~s~dg-----~I~IwDl~t~-~~~~~l~~-h~~---~V~s 734 (842)
..|++||+.+++...... +...+.+++|+|+++.|++++.++ .|++||+.++ ........ +.. .+.+
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP 314 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence 679999999888655442 234588999999999999988775 8999999998 44333322 222 2467
Q ss_pred EEEcC--CCCEEEEEe-CCeEEEEEcC-CCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCC-----eEEEEECCC
Q 003177 735 VCWNT--SGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYE-----TLELWNMTE 804 (842)
Q Consensus 735 l~~sp--dg~~Lasgs-Dg~I~IwDl~-s~~~~~~i~~~~~~~~~I~s-v~~spdg~~L~sgs~dg-----~I~Iwdl~~ 804 (842)
++|+| ||++|+++. |+.++||++. ++ ..+..+..+...+.. ++|+|+++.|++++.++ .|+.||+.+
T Consensus 315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 315 LTFLPGSNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp CEECTTCSSEEEEEECTTSSCEEEEEETTS---CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred ceeecCCCCEEEEEEccCCccEEEEEECCC---CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 89999 999998888 8888898876 33 456667767777776 79999999888777653 677888888
Q ss_pred CeEEEEccCCCCeeEEEEeCCCCEEEEEeCC----CcEEEcC
Q 003177 805 NKTLTLSAHDKLVSSLAASTVNGMVASASHD----KCVKIWK 842 (842)
Q Consensus 805 ~~~~~~~~h~~~V~sla~spdg~~Lasgs~D----G~V~IWd 842 (842)
++...+ .|...+.+++|+|||++|+.++.+ +.|++||
T Consensus 392 ~~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 392 GKTKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp CCCEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred CCceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 775444 477789999999999988876544 4588885
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=1.1e-21 Score=247.73 Aligned_cols=278 Identities=8% Similarity=-0.008 Sum_probs=226.6
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003177 553 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 631 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 631 (842)
...+.+|.+.|.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+.+++|+|||++|+++ .++.|++||+
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~ 272 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNP 272 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecC
Confidence 4455899999999999988 6777888889999997653 44455666665 46778999999999988 4899999999
Q ss_pred CCCCceeeEeec-----------CccceEEEEEc-CCCCcEEEEEeCCCcEEEEECCCCceeeEEeecC-CeeEEEEeCC
Q 003177 632 ENPDYSLRTFTG-----------HSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPR 698 (842)
Q Consensus 632 ~t~~~~i~~~~~-----------h~~~V~sl~fs-pdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-~i~~v~~sp~ 698 (842)
.... +..+.. |...|.+++|+ |+|..+++++ ++.|++|++..++......+.. .+..++|+ +
T Consensus 273 ~~~~--l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-d 347 (1045)
T 1k32_A 273 DTEK--IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-T 347 (1045)
T ss_dssp TTCC--EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEECSCCSCEEEEEECSS-S
T ss_pred CceE--eeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEccCCCcceEEeeeEc-C
Confidence 4432 334443 34578999999 9988666544 8899999999887655444445 68899999 9
Q ss_pred CCEEEEEEcCCeEE-EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCce
Q 003177 699 LGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF 776 (842)
Q Consensus 699 g~~l~~~s~dg~I~-IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I 776 (842)
+..+++++.++.|. +||+.+++.... .+|...+.+++|+|||++|++++ ++.|++||+.++ ........+...+
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg---~~~~~~~~~~~~v 423 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG---KPTVIERSREAMI 423 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCC
T ss_pred CCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC---ceEEeccCCCCCc
Confidence 99999999888899 999988765543 37888999999999999999988 889999999987 4555555788889
Q ss_pred EEEEEeCCCCEEEEEEcCC----------eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 777 HSCVFHPTFPSLLVIGCYE----------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 777 ~sv~~spdg~~L~sgs~dg----------~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
..++|+|||++|++++.++ .|++||+.+++...+..|...+.+++|+|||++|++++.++...+|+
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 9999999999999887754 89999999999778888999999999999999999999888777764
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=1.4e-21 Score=235.66 Aligned_cols=298 Identities=11% Similarity=0.074 Sum_probs=207.8
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCC---CeEEEEEcCCCCEEEEEECC-------
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGHD------- 581 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~---~V~sv~fSpdg~~Lasgs~D------- 581 (842)
.++++ +.|+++.+|..... . ....+.+|.. .|.+++|||||++|++++.+
T Consensus 29 ~~~~~-~~dg~i~~~d~~~g----------------~---~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 29 EFIYR-EQKGTVRLWNVETN----------------T---STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88 (723)
T ss_dssp CBCCC-CSSSCEEEBCGGGC----------------C---CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred cEEEE-eCCCCEEEEECCCC----------------c---EEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence 34444 56777888744322 1 1234455654 49999999999999999875
Q ss_pred --CcEEEEecCCCeEEEEec---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccc---------
Q 003177 582 --KKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT--------- 647 (842)
Q Consensus 582 --g~I~vwd~~t~~~~~~l~---~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~--------- 647 (842)
+.|++||+.+++. ..+. .|...+.+++|+|||++|++++. +.|++||+.++.. ......+...
T Consensus 89 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~ 165 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDW 165 (723)
T ss_dssp CCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCH
T ss_pred ceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccce
Confidence 7888999998876 3343 45556899999999999999986 7999999987654 3333333332
Q ss_pred ---------eEEEEEcCCCCcEEEEEeCC---------------------------------CcEEEEECCCCceeeEEe
Q 003177 648 ---------VMSLDFHPSKEDLLCSCDNN---------------------------------SEIRYWSINNGSCAGVFK 685 (842)
Q Consensus 648 ---------V~sl~fspdg~~llasgs~D---------------------------------g~I~vwDl~t~~~i~~~~ 685 (842)
+.+++|+|||+.++++...+ ..|++||+.++++...+.
T Consensus 166 v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence 37899999998766554322 279999999887655554
Q ss_pred e-------cCCeeEEEEeCCCCEEEEEEcC----CeEEEEECCCCeEEEEEeC-CCCCE----EEEEEcCCCCEEEEE-e
Q 003177 686 C-------QSGATQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKLQG-HKNQV----HSVCWNTSGEYLASV-S 748 (842)
Q Consensus 686 ~-------~~~i~~v~~sp~g~~l~~~s~d----g~I~IwDl~t~~~~~~l~~-h~~~V----~sl~~spdg~~Lasg-s 748 (842)
. ...+..++|+|+++.+++.... ..|++||+.++++...+.. +...+ ..++|+|||+.|+.. +
T Consensus 246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe
Confidence 3 2357889999999988766543 5799999999887666543 33443 378999999977654 3
Q ss_pred --CC------eEEEEEc-CCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcC---CeEEEEECCCC---eEEEEcc
Q 003177 749 --DE------LVRVWSI-GSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY---ETLELWNMTEN---KTLTLSA 812 (842)
Q Consensus 749 --Dg------~I~IwDl-~s~~~~~~i~~~~~~~~~I~s-v~~spdg~~L~sgs~d---g~I~Iwdl~~~---~~~~~~~ 812 (842)
++ .|++||+ ..+. ..+...+......+.. ++|+|+++.|++.+.+ +.++||++... +...+..
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~-~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 404 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSS-NDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC 404 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSS-SCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSST
T ss_pred cccCCCcceeEEEEEeccCCCC-ccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecc
Confidence 66 4666773 3331 0013333333344544 6999999999887766 68899987642 2233333
Q ss_pred ---CCCCeeEEEEeCCCCEEEEEe
Q 003177 813 ---HDKLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 813 ---h~~~V~sla~spdg~~Lasgs 833 (842)
|...+..++|+|||++|+...
T Consensus 405 ~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 405 DLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp TSSSSCCCCEEEECTTSSEEEEEC
T ss_pred cccCCCCeEEEEECCCCCEEEEEc
Confidence 677799999999999887653
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=3.1e-20 Score=203.32 Aligned_cols=260 Identities=11% Similarity=0.098 Sum_probs=182.4
Q ss_pred CCcEEEEec--CCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCc-eeeEeecCccceEEEEE
Q 003177 581 DKKAVLWCT--ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDY-SLRTFTGHSTTVMSLDF 653 (842)
Q Consensus 581 Dg~I~vwd~--~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~t~~~-~i~~~~~h~~~V~sl~f 653 (842)
++.|.+|++ .+++... ....+...+..++|+||++ |++++. ++.|++||+.++.. .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 455767655 4565543 3334567788999999999 555554 68999999976543 23344556778899999
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCC-Cc--eeeEEeec----------CCeeEEEEeCCCCEEEEEEcCCeEEEEECC-CC
Q 003177 654 HPSKEDLLCSCDNNSEIRYWSINN-GS--CAGVFKCQ----------SGATQMRFQPRLGRILAAAIENYISILDVE-TQ 719 (842)
Q Consensus 654 spdg~~llasgs~Dg~I~vwDl~t-~~--~i~~~~~~----------~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~-t~ 719 (842)
+|+++.+++++..++.|.+|++.. +. .+..+... ..+.+++|+|+++.+++...++.|.+||+. ++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 999987776666889999999963 33 23333221 137789999999944444457899999998 55
Q ss_pred eEE--EEEeC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecCC------CceEEEEEeCCCCE
Q 003177 720 VCR--LKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCTG------NKFHSCVFHPTFPS 787 (842)
Q Consensus 720 ~~~--~~l~~-h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~~------~~I~sv~~spdg~~ 787 (842)
+.. ..+.. ....+..++|+|||++|++++ ++.|.+|++... .....+..+.... ..+..++|+|+|++
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 432 22232 234678899999999777765 789999998752 1112233333222 45888999999998
Q ss_pred EEEEE-cCCeEEEEECCC-C--eEE-EEccCCCCeeEEEEeCCCCEEEEEeCC-CcEEEc
Q 003177 788 LLVIG-CYETLELWNMTE-N--KTL-TLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 841 (842)
Q Consensus 788 L~sgs-~dg~I~Iwdl~~-~--~~~-~~~~h~~~V~sla~spdg~~Lasgs~D-G~V~IW 841 (842)
|++++ .++.|.+|++.. + +.+ .+..+...+.+++|+|||++|++++.+ +.|.+|
T Consensus 254 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 254 LYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 86655 578999999973 2 233 445566778999999999988888754 899999
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=9e-21 Score=204.76 Aligned_cols=268 Identities=12% Similarity=0.087 Sum_probs=203.0
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEec-CCCC-CeEEEEEcCCCCEEE-EEECCCcEEEEe
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTS-KVESCHFSPDGKLLA-TGGHDKKAVLWC 588 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~-gH~~-~V~sv~fSpdg~~La-sgs~Dg~I~vwd 588 (842)
.++++++.++.|.+|+.... ..+..+. ++.. .+.+++|+|+|++|+ ++..++.|.+||
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 62 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC-------------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEE
Confidence 46778888999999865332 1122232 2222 478899999998765 455678999999
Q ss_pred cCCCeEEEEeccC-----CCCeEEEEEcCCCCEEEEEe------------CCCeEEEEEcCCCCceeeEeecCccceEEE
Q 003177 589 TESFTVKSTLEEH-----TQWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSL 651 (842)
Q Consensus 589 ~~t~~~~~~l~~h-----~~~I~~l~fspdg~~Latgs------------~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl 651 (842)
+.+++.+..+... ...+.+++|+|++++|++++ .++.|.+||+.++.. +..+.. ...+.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITML 140 (337)
T ss_dssp TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCE
T ss_pred CCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCccee
Confidence 9999888766532 22677899999999999886 579999999987543 444443 4567889
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCC----------------------
Q 003177 652 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN---------------------- 709 (842)
Q Consensus 652 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg---------------------- 709 (842)
+|+|+++.++++ ++.|++||+.+++.+..+........+.|+|++..+++.+..+
T Consensus 141 ~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T 1pby_B 141 AWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp EECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred EECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence 999999876655 6899999999999887776544223447888888765554332
Q ss_pred --eEEEEECCCCeEE-EEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003177 710 --YISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 786 (842)
Q Consensus 710 --~I~IwDl~t~~~~-~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~ 786 (842)
.|.+||+.+++.. ..+..+...+.+++|+|++++|+++ ++.|++||+.++ +.+..+.. ...+.+++|+|+++
T Consensus 218 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~ 292 (337)
T 1pby_B 218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVPL-PHSYYSVNVSTDGS 292 (337)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECTTSC
T ss_pred ccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCC---cCcceecC-CCceeeEEECCCCC
Confidence 4789999988664 3344566788999999999999888 799999999887 55555543 35678999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEE
Q 003177 787 SLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 787 ~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
+|++++.++.|++||+.+++.+
T Consensus 293 ~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 293 TVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEESBSSEEEEEETTTCCEE
T ss_pred EEEEEcCCCcEEEEECcCCcEE
Confidence 9999988999999999999877
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=7.8e-21 Score=239.80 Aligned_cols=278 Identities=9% Similarity=0.078 Sum_probs=217.5
Q ss_pred EEEecCCCCCe-------EEEEEcCCCCEEEEEECC------CcEEEEecCCCeEE------------------------
Q 003177 553 FQLIPASTSKV-------ESCHFSPDGKLLATGGHD------KKAVLWCTESFTVK------------------------ 595 (842)
Q Consensus 553 i~~l~gH~~~V-------~sv~fSpdg~~Lasgs~D------g~I~vwd~~t~~~~------------------------ 595 (842)
...+..|...+ .+++|+|||+++++++.+ ..|++|++.+++..
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~ 171 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF 171 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence 45677888888 999999999977777754 35788887655432
Q ss_pred -------------------------EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEE
Q 003177 596 -------------------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 650 (842)
Q Consensus 596 -------------------------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~s 650 (842)
..+.+|...+.++.|+++ .++++++.|+.+.||.++........+..|. .+..
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~ 249 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYP 249 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCE
T ss_pred CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccce
Confidence 123457778889999988 6677788889999998765333355566555 4677
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec------------CCeeEEEEe-CCCCEEEEEEcCCeEEEEECC
Q 003177 651 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQ-PRLGRILAAAIENYISILDVE 717 (842)
Q Consensus 651 l~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~------------~~i~~v~~s-p~g~~l~~~s~dg~I~IwDl~ 717 (842)
++|+|+|..++++ .++.|++||+..... ..+... ..+.+++|+ |++..+++++ ++.|.+|++.
T Consensus 250 ~~~SpDG~~la~~--~~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~ 325 (1045)
T 1k32_A 250 RHLNTDGRRILFS--KGGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS 325 (1045)
T ss_dssp EEEEESSSCEEEE--ETTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT
T ss_pred eeEcCCCCEEEEE--eCCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC
Confidence 8999999876654 489999999954433 333321 258999999 9999888887 8899999999
Q ss_pred CCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe-CCeEE-EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003177 718 TQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVR-VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 794 (842)
Q Consensus 718 t~~~~~~l~~h~~-~V~sl~~spdg~~Lasgs-Dg~I~-IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d 794 (842)
++.... +..|.. .+.+++|+ ||+.|+.++ +..|. +||+.++ .. ..+..+...+..++|+|+|++|++++.+
T Consensus 326 ~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~---~~-~~l~~~~~~~~~~~~SpDG~~la~~~~~ 399 (1045)
T 1k32_A 326 GTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG---KA-EKFEENLGNVFAMGVDRNGKFAVVANDR 399 (1045)
T ss_dssp SSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC---CE-EECCCCCCSEEEEEECTTSSEEEEEETT
T ss_pred CCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC---Cc-eEecCCccceeeeEECCCCCEEEEECCC
Confidence 876543 566777 89999999 999999888 66788 8898775 22 3344677889999999999999999999
Q ss_pred CeEEEEECCCCeEEEEc-cCCCCeeEEEEeCCCCEEEEEeCCC----------cEEEcC
Q 003177 795 ETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDK----------CVKIWK 842 (842)
Q Consensus 795 g~I~Iwdl~~~~~~~~~-~h~~~V~sla~spdg~~Lasgs~DG----------~V~IWd 842 (842)
+.|++||+.+++...+. .|...|.+++|+|||++|++++.++ .|++||
T Consensus 400 ~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 400 FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred CeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 99999999999887554 8999999999999999999887654 899996
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=1.2e-20 Score=205.15 Aligned_cols=270 Identities=9% Similarity=0.039 Sum_probs=194.6
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCC-CCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeeEee
Q 003177 565 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT 642 (842)
Q Consensus 565 sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~-~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~t~~~~i~~~~ 642 (842)
.+++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++. +..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEE
Confidence 45678889999999999999999999999888876543 2578999999998665 455689999999987654 33333
Q ss_pred -cC-----ccceEEEEEcCCCCcEEEEEeC-----------CCcEEEEECCCCc---eeeEEeecCCeeEEEEeCCCCEE
Q 003177 643 -GH-----STTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRI 702 (842)
Q Consensus 643 -~h-----~~~V~sl~fspdg~~llasgs~-----------Dg~I~vwDl~t~~---~i~~~~~~~~i~~v~~sp~g~~l 702 (842)
.+ ...+.+++|+|+++.++++... ++.|.+||+.+++ .+..+.....+.+++|+|+++ +
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 22 2347889999999866655533 4899999998844 344555566788999999999 6
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEeCCCC------------------------CEEEEEEcCCCCEEEEEe--CCeEEEEE
Q 003177 703 LAAAIENYISILDVETQVCRLKLQGHKN------------------------QVHSVCWNTSGEYLASVS--DELVRVWS 756 (842)
Q Consensus 703 ~~~s~dg~I~IwDl~t~~~~~~l~~h~~------------------------~V~sl~~spdg~~Lasgs--Dg~I~IwD 756 (842)
+++ ++.|.+||+.+++.+..+..+.. ...++++++++....... ...+..+|
T Consensus 162 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 664 34599999999988777654320 234566666543221111 11222355
Q ss_pred cCCCCCceeEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCC
Q 003177 757 IGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 835 (842)
Q Consensus 757 l~s~~~~~~i~~~~~~~~~I~sv~~sp-dg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~D 835 (842)
..++. .....+......+..++|+| ++++++++ ++.|++||+.+++.+........+.+++|+|++++|++++.+
T Consensus 240 ~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred ccCCc--EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCC
Confidence 55442 12222333566788999999 99998888 889999999999987555555668899999999988888889
Q ss_pred CcEEEcC
Q 003177 836 KCVKIWK 842 (842)
Q Consensus 836 G~V~IWd 842 (842)
+.|++||
T Consensus 316 ~~v~v~d 322 (349)
T 1jmx_B 316 NDLAVFN 322 (349)
T ss_dssp SEEEEEE
T ss_pred CeEEEEe
Confidence 9999996
No 150
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=8.9e-21 Score=210.33 Aligned_cols=286 Identities=12% Similarity=0.070 Sum_probs=208.0
Q ss_pred EEEecCCCCCeEE-----EEEcCCCCEEEEEEC-CC--cEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003177 553 FQLIPASTSKVES-----CHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 624 (842)
Q Consensus 553 i~~l~gH~~~V~s-----v~fSpdg~~Lasgs~-Dg--~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 624 (842)
+..+..|...+.. .+|||||++|++++. ++ .|++||+.+++......++...+.+++|+||++.|++++.++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 4556677766666 899999999999887 66 488899999988877777776666788999999999999999
Q ss_pred eEEEEEcCCCCceeeEeecCccceEEEE--EcCCCCcEEEEE---------------------eCCCcEEEEECCCCcee
Q 003177 625 TVRVWDTENPDYSLRTFTGHSTTVMSLD--FHPSKEDLLCSC---------------------DNNSEIRYWSINNGSCA 681 (842)
Q Consensus 625 ~I~IWDl~t~~~~i~~~~~h~~~V~sl~--fspdg~~llasg---------------------s~Dg~I~vwDl~t~~~i 681 (842)
.|++||+.+++. ...+..+...+.... +++++..+++.. ..+..|++||+.+++..
T Consensus 103 ~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 103 NLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp EEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred eEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 999999998664 444455555554444 488887554321 23468999999999877
Q ss_pred eEEeecCCeeEEEEeC-CCCEEEEEEcC------CeEEEEECCCCeEEEEEeCCC--CCEEEEEEcCCCCEEEEEe--CC
Q 003177 682 GVFKCQSGATQMRFQP-RLGRILAAAIE------NYISILDVETQVCRLKLQGHK--NQVHSVCWNTSGEYLASVS--DE 750 (842)
Q Consensus 682 ~~~~~~~~i~~v~~sp-~g~~l~~~s~d------g~I~IwDl~t~~~~~~l~~h~--~~V~sl~~spdg~~Lasgs--Dg 750 (842)
........+..+.|+| +++.|+.+..+ ..|.++|+..+... .+..+. ..+..++|+|||+.|+..+ ++
T Consensus 182 ~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (388)
T 3pe7_A 182 VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKG 260 (388)
T ss_dssp EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCC
Confidence 7777777799999999 99988887763 37888888766443 333333 3578899999999776544 23
Q ss_pred ----eEEEEEcCCCCCceeEEEeecCCCc---eEEEEEeCCCCEEEEE---------EcCCeEEEEECCCCeEEEEccCC
Q 003177 751 ----LVRVWSIGSGSKGECIHELSCTGNK---FHSCVFHPTFPSLLVI---------GCYETLELWNMTENKTLTLSAHD 814 (842)
Q Consensus 751 ----~I~IwDl~s~~~~~~i~~~~~~~~~---I~sv~~spdg~~L~sg---------s~dg~I~Iwdl~~~~~~~~~~h~ 814 (842)
.|++||+.++.. ..+..+..+... ...++|+|+|+.|++. ..+..|++||+.+++...+..|.
T Consensus 261 ~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 339 (388)
T 3pe7_A 261 SPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHD 339 (388)
T ss_dssp CCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECC
T ss_pred CCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecccc
Confidence 399999998743 233333221000 1113799999988865 34558999999999887777776
Q ss_pred C-----------CeeEEEEeCCCCEEEEEe-CCCcEEEc
Q 003177 815 K-----------LVSSLAASTVNGMVASAS-HDKCVKIW 841 (842)
Q Consensus 815 ~-----------~V~sla~spdg~~Lasgs-~DG~V~IW 841 (842)
. .+.+++|+|||+.|+.++ .+|...||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 340 TSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred CcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 6 688899999999877665 57777776
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=6.8e-20 Score=200.64 Aligned_cols=250 Identities=14% Similarity=0.147 Sum_probs=184.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEecCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEc
Q 003177 558 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT 631 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~---Dg~I~vwd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl 631 (842)
.+...+..++|+|||+ |++++. ++.|++|++.+++ .+..+..+...+..++|+|++++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 3446688899999999 555544 6899999998766 3445456778899999999999998888 6799999999
Q ss_pred CCCCc--eeeEeec---------CccceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCceeeEE--e--ecCCeeEEEE
Q 003177 632 ENPDY--SLRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVF--K--CQSGATQMRF 695 (842)
Q Consensus 632 ~t~~~--~i~~~~~---------h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~~--~--~~~~i~~v~~ 695 (842)
..... .+..+.. +...+.+++|+|+++ ++++...++.|++|++. +++..... . ....+..++|
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 64322 1222211 123488999999998 88788788999999998 55443222 2 2336788999
Q ss_pred eCCCCEEEEEE-cCCeEEEEECCC--CeE--EEEEeCCC------CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC
Q 003177 696 QPRLGRILAAA-IENYISILDVET--QVC--RLKLQGHK------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK 762 (842)
Q Consensus 696 sp~g~~l~~~s-~dg~I~IwDl~t--~~~--~~~l~~h~------~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~ 762 (842)
+|+++++++++ .++.|.+|++.. ++. +..+.... ..+..++|+|||++|+++. ++.|.+|++.....
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH 274 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence 99999777765 568999999874 543 33333332 3588999999999885544 88999999974323
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEE--ECCCCeEEE
Q 003177 763 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW--NMTENKTLT 809 (842)
Q Consensus 763 ~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d-g~I~Iw--dl~~~~~~~ 809 (842)
...+..+..+...+..++|+|++++|++++.+ +.|.+| |..++++..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 275 LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 35666666666778899999999999998875 799999 556677653
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=2.4e-19 Score=197.59 Aligned_cols=262 Identities=12% Similarity=0.087 Sum_probs=190.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECC----CcEEEEecCC--CeE--EEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEE
Q 003177 559 STSKVESCHFSPDGKLLATGGHD----KKAVLWCTES--FTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW 629 (842)
Q Consensus 559 H~~~V~sv~fSpdg~~Lasgs~D----g~I~vwd~~t--~~~--~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IW 629 (842)
|...+..++|+|||++|++++.+ +.|.+|++.. ++. +..+..+...+..+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 67778889999999999999886 7999998765 443 3444445667888888 888887776 57899999
Q ss_pred EcCCCCcee--eE---eec--------CccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce--------------ee
Q 003177 630 DTENPDYSL--RT---FTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--------------AG 682 (842)
Q Consensus 630 Dl~t~~~~i--~~---~~~--------h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~--------------i~ 682 (842)
++....... .. ..+ +...+.+++|+|+++.+++++..++.|++|++..... ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 997543211 11 111 1234588999999998887777789999999875431 11
Q ss_pred EEeecCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeE--EEEEe---CCCCCEEEEEEcCCCCEEEEEe-C--CeEE
Q 003177 683 VFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC--RLKLQ---GHKNQVHSVCWNTSGEYLASVS-D--ELVR 753 (842)
Q Consensus 683 ~~~~~~~i~~v~~sp~g~~l~~~s-~dg~I~IwDl~t~~~--~~~l~---~h~~~V~sl~~spdg~~Lasgs-D--g~I~ 753 (842)
.......+..++|+|+++++++++ .++.|.+||+.++.. +..+. .+...+.+++|+|||++|+++. + +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 222345688999999999988888 589999999987754 33332 2345578999999999987766 5 6899
Q ss_pred EEEcCC-CCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--ECCCCeEEEEc--cCCCCeeEEEEe
Q 003177 754 VWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW--NMTENKTLTLS--AHDKLVSSLAAS 823 (842)
Q Consensus 754 IwDl~s-~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs-~dg~I~Iw--dl~~~~~~~~~--~h~~~V~sla~s 823 (842)
+|++.. ......+..+.. ...+..++|+|+|++|++++ .++.|.+| |..++++..+. .+...+.||.|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 999962 122234555554 56788999999999999988 56789886 55577766443 345678899886
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=5.2e-20 Score=221.67 Aligned_cols=244 Identities=14% Similarity=0.133 Sum_probs=184.4
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCC-----CeEEEEeccCCCC--------------eEEEEEcCCCC
Q 003177 555 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQW--------------ITDVRFSPSLS 615 (842)
Q Consensus 555 ~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t-----~~~~~~l~~h~~~--------------I~~l~fspdg~ 615 (842)
.+..|...|.+++|||||++||++ .|+.|++||+.+ ++.......+... +.+++|+|||+
T Consensus 115 ~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~ 193 (706)
T 2z3z_A 115 YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS 193 (706)
T ss_dssp EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS
T ss_pred EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC
Confidence 344567779999999999999985 679999999998 7766544444443 48999999999
Q ss_pred EEEEEe---------------------------------CCCeEEEEEcCCCCceeeEe--ecCccceEEEEEcCCCCcE
Q 003177 616 RLATSS---------------------------------ADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDL 660 (842)
Q Consensus 616 ~Latgs---------------------------------~Dg~I~IWDl~t~~~~i~~~--~~h~~~V~sl~fspdg~~l 660 (842)
+|++++ .+..|++||+.++.. .... ..|...+.+++|+|+++.+
T Consensus 194 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l 272 (706)
T 2z3z_A 194 CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-VYLQTGEPKEKFLTNLSWSPDENIL 272 (706)
T ss_dssp EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-EECCCCSCTTCEEEEEEECTTSSEE
T ss_pred EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-EeeccCCCCceeEeeEEEECCCCEE
Confidence 999998 446899999987653 2222 2466789999999999866
Q ss_pred EEEEeCCC-----cEEEEECCCC-ceeeEEeecC-----CeeEEEEeC--CCCEEEEEEcCCeEEEEECC-CCeEEEEEe
Q 003177 661 LCSCDNNS-----EIRYWSINNG-SCAGVFKCQS-----GATQMRFQP--RLGRILAAAIENYISILDVE-TQVCRLKLQ 726 (842)
Q Consensus 661 lasgs~Dg-----~I~vwDl~t~-~~i~~~~~~~-----~i~~v~~sp--~g~~l~~~s~dg~I~IwDl~-t~~~~~~l~ 726 (842)
++++ .++ .|++||+.++ .......... .+..++|+| ++++++++..++.+.||++. ++..+..+.
T Consensus 273 ~~~~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~ 351 (706)
T 2z3z_A 273 YVAE-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT 351 (706)
T ss_dssp EEEE-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC
T ss_pred EEEE-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC
Confidence 6444 344 8999999998 4333332211 246789999 99888888888988888876 567777787
Q ss_pred CCCCCEEE-EEEcCCCCEEEEEe--CC----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC----C
Q 003177 727 GHKNQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----E 795 (842)
Q Consensus 727 ~h~~~V~s-l~~spdg~~Lasgs--Dg----~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d----g 795 (842)
.|...+.+ ++|+|+++.|+.++ ++ .|+.||+.++. ...+. +...+.+++|+|++++|++++.+ +
T Consensus 352 ~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~ 426 (706)
T 2z3z_A 352 KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPR 426 (706)
T ss_dssp CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSC
T ss_pred CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----ceecc-CCCceEEEEECCCCCEEEEEecCCCCCc
Confidence 78878877 79999999887665 44 67777776652 22333 46678999999999998887654 3
Q ss_pred eEEEEECCCCe
Q 003177 796 TLELWNMTENK 806 (842)
Q Consensus 796 ~I~Iwdl~~~~ 806 (842)
.|++||+.+++
T Consensus 427 ~i~l~d~~~~~ 437 (706)
T 2z3z_A 427 KVTVTNIGKGS 437 (706)
T ss_dssp EEEEEESSSCE
T ss_pred EEEEEECCCCe
Confidence 69999999887
No 154
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=2.8e-19 Score=194.91 Aligned_cols=236 Identities=9% Similarity=0.083 Sum_probs=191.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC-------CCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEE
Q 003177 601 HTQWITDVRFSPSLSRLATSSA-------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 673 (842)
Q Consensus 601 h~~~I~~l~fspdg~~Latgs~-------Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vw 673 (842)
....+..++|+|++++|++++. ++.|.+||..+++. +..+.. ...+.+++|+|+++.+++++..++.|.+|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 3456889999999999888874 56899999998664 444443 34578899999999888888888999999
Q ss_pred ECCCCceeeEEeecC----------CeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC
Q 003177 674 SINNGSCAGVFKCQS----------GATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 741 (842)
Q Consensus 674 Dl~t~~~i~~~~~~~----------~i~~v~~sp~g~~l~~~s~--dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg 741 (842)
|+.+++.+..+.... .+.+++|+|+++.+++++. ++.|.+||+.+++.+..+..+...+.+++|+|++
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 999999888877633 1688999999998888773 7889999999999998887666678899999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCCCceeEEEeec----CCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEccCCC
Q 003177 742 EYLASVS-DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDK 815 (842)
Q Consensus 742 ~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~----~~~~I~sv~~spdg~~L~sgs~d-g~I~Iwdl~~~~~~~~~~h~~ 815 (842)
++|++++ ++.|.+||+.++ +.+..+.. +...+..++|+|++++|++++.+ +.|.+||+.+++.+.......
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 273 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE 273 (353)
T ss_dssp TEEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred CEEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence 9999888 899999999987 55555443 45567889999999988888765 799999999998874333222
Q ss_pred CeeEEEEeCCCCEEEEEe-CCCcEEEcC
Q 003177 816 LVSSLAASTVNGMVASAS-HDKCVKIWK 842 (842)
Q Consensus 816 ~V~sla~spdg~~Lasgs-~DG~V~IWd 842 (842)
..+++|+|+++++++++ .++.|.+||
T Consensus 274 -~~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 274 -SLAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp -CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred -CceEEECCCCCEEEEEECCCCeEEEEE
Confidence 35799999999665555 689999996
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=5.7e-19 Score=194.57 Aligned_cols=267 Identities=9% Similarity=0.071 Sum_probs=188.1
Q ss_pred CCEEEEEEC----CCcEEEEec--CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEEcCCC--Cc-ee
Q 003177 572 GKLLATGGH----DKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENP--DY-SL 638 (842)
Q Consensus 572 g~~Lasgs~----Dg~I~vwd~--~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g~I~IWDl~t~--~~-~i 638 (842)
..++++|+. ++.|++|++ .+++.......+...+..++|+||+++|++++.+ +.|.+|+++.. .. .+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 345566643 568888865 4555443222277778899999999999999886 79999998764 21 22
Q ss_pred eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeE----Eee-----------cCCeeEEEEeCCCCEEE
Q 003177 639 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKC-----------QSGATQMRFQPRLGRIL 703 (842)
Q Consensus 639 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~----~~~-----------~~~i~~v~~sp~g~~l~ 703 (842)
.....+...+..+++ +++.++++...++.|.+|++.....+.. +.. ...+.+++|+|++++++
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 233335566778888 7777776666789999999975433221 111 12347899999999887
Q ss_pred EEEc-CCeEEEEECCCCe-------E------EEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEE
Q 003177 704 AAAI-ENYISILDVETQV-------C------RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH 767 (842)
Q Consensus 704 ~~s~-dg~I~IwDl~t~~-------~------~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~ 767 (842)
+++. ++.|.+|++.... . ......+...+.+++|+|||++|++++ ++.|.+||+.++.. ..+.
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~~ 249 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEIQ 249 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEeE
Confidence 7775 7899999887432 1 122233556788999999999887776 78999999986521 2233
Q ss_pred Eee---cCCCceEEEEEeCCCCEEEEEEcC--CeEEEEECC--CCeEE--EEccCCCCeeEEEEeCCCCEEEEEe-CCCc
Q 003177 768 ELS---CTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNMT--ENKTL--TLSAHDKLVSSLAASTVNGMVASAS-HDKC 837 (842)
Q Consensus 768 ~~~---~~~~~I~sv~~spdg~~L~sgs~d--g~I~Iwdl~--~~~~~--~~~~h~~~V~sla~spdg~~Lasgs-~DG~ 837 (842)
.+. .+......++|+|+|++|+++..+ +.|.+|++. +++.. ........+.+++|+|||++|++++ .++.
T Consensus 250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~ 329 (361)
T 3scy_A 250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNV 329 (361)
T ss_dssp EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTE
T ss_pred EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCC
Confidence 322 233557899999999999887765 799999985 45532 2222256788999999999888887 6789
Q ss_pred EEEc
Q 003177 838 VKIW 841 (842)
Q Consensus 838 V~IW 841 (842)
|.+|
T Consensus 330 v~v~ 333 (361)
T 3scy_A 330 IQIF 333 (361)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=1.3e-19 Score=206.54 Aligned_cols=240 Identities=10% Similarity=0.090 Sum_probs=177.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCC-----------eEE-----EEeccCCCCeEEEEEcCCCCEEE----E
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVK-----STLEEHTQWITDVRFSPSLSRLA----T 619 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~-----------~~~-----~~l~~h~~~I~~l~fspdg~~La----t 619 (842)
...+.++++++++.+|++++.|+ |+||+.... ... ..+ .|...|++++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence 34588999999999999999888 888864311 111 112 3567899999999999999 7
Q ss_pred EeCCCeEEEEEcCCC-----Cc-----eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecC
Q 003177 620 SSADRTVRVWDTENP-----DY-----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQS 688 (842)
Q Consensus 620 gs~Dg~I~IWDl~t~-----~~-----~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~ 688 (842)
++.|+.|+|||+.+. .. .+..+.+|...|.+++|+|++..+|++++.||+|++||++++..+.... +..
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~ 193 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV 193 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence 888999999998753 11 2455677999999999999977789999999999999999886654443 456
Q ss_pred CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-------CCEEEEEEcCCCCEEEEEe--CC------eEE
Q 003177 689 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-------NQVHSVCWNTSGEYLASVS--DE------LVR 753 (842)
Q Consensus 689 ~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~-------~~V~sl~~spdg~~Lasgs--Dg------~I~ 753 (842)
.+.+++|+|++.+|++++.||.|++||++ +.....+..|. ..|.+++|++++.++++.+ || .++
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~ 272 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV 272 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence 89999999999999999999999999998 55555554432 3799999999998887655 53 399
Q ss_pred EEEcCCCCC--ceeEEEee-------cCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC
Q 003177 754 VWSIGSGSK--GECIHELS-------CTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM 802 (842)
Q Consensus 754 IwDl~s~~~--~~~i~~~~-------~~~~~I~sv~~spdg~~L~sgs~dg-~I~Iwdl 802 (842)
+|+++.... ......+. ....+...+.+.++.+.+++++... .|.|+..
T Consensus 273 i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 273 MALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 999986532 12222221 1122333444557777777776644 4555554
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=226.00 Aligned_cols=268 Identities=12% Similarity=0.089 Sum_probs=198.9
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCC---CeEEEEEcCCCCEEEEEeC---------CCeEEEEEcC
Q 003177 565 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSA---------DRTVRVWDTE 632 (842)
Q Consensus 565 sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~---~I~~l~fspdg~~Latgs~---------Dg~I~IWDl~ 632 (842)
+++|+|||+++++ +.|+.|++||+.+++....+..|.. .|.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6899999965554 5699999999999998877766644 4899999999999999876 7899999998
Q ss_pred CCCcee-eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec--C-----------------CeeE
Q 003177 633 NPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--S-----------------GATQ 692 (842)
Q Consensus 633 t~~~~i-~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~--~-----------------~i~~ 692 (842)
++.... ..+ ...+.+++|+|||+.++++ . ++.|++||+.++++....... . ...+
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccceec---CcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 764300 222 2568899999999876644 3 789999999988765433211 1 1148
Q ss_pred EEEeCCCCEEEEEEcCC----------------------------------eEEEEECCCCeEE--EE------EeCCCC
Q 003177 693 MRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCR--LK------LQGHKN 730 (842)
Q Consensus 693 v~~sp~g~~l~~~s~dg----------------------------------~I~IwDl~t~~~~--~~------l~~h~~ 730 (842)
++|+|||+.|++++.|. .|++||+.+++.. .. +.+|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999988652 7889999987642 11 235778
Q ss_pred CEEEEEEcCCCCEEEEEe-C----CeEEEEE----cCCCCCceeEEEe----ecCCCceE-----EEEEeCCCCEEEEE-
Q 003177 731 QVHSVCWNTSGEYLASVS-D----ELVRVWS----IGSGSKGECIHEL----SCTGNKFH-----SCVFHPTFPSLLVI- 791 (842)
Q Consensus 731 ~V~sl~~spdg~~Lasgs-D----g~I~IwD----l~s~~~~~~i~~~----~~~~~~I~-----sv~~spdg~~L~sg- 791 (842)
.+.+++|+||++++++.. . ..|.+|| +.++. +...+ ..+...+. .+.|+|+|+.|+..
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD---CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE---CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc---eEEEEecccccCCceEccccCCccEECCCCCeEEEEE
Confidence 899999999988777754 2 2588899 76653 22222 34555555 78999999976653
Q ss_pred -EcCC--eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCC-----CcEEEcC
Q 003177 792 -GCYE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-----KCVKIWK 842 (842)
Q Consensus 792 -s~dg--~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~D-----G~V~IWd 842 (842)
..++ .|++||+.+++...+..+...|..+.++ +++.|+..+.+ +.++||+
T Consensus 331 ~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 331 SDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp ECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred EccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 3344 7888899888877777777778888888 88877766654 7788873
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=1.9e-18 Score=191.66 Aligned_cols=267 Identities=10% Similarity=0.053 Sum_probs=186.7
Q ss_pred EEEEEECC--CcEEEEec--CCCeEEE--Eec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-CCCceeeEeec-C
Q 003177 574 LLATGGHD--KKAVLWCT--ESFTVKS--TLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPDYSLRTFTG-H 644 (842)
Q Consensus 574 ~Lasgs~D--g~I~vwd~--~t~~~~~--~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~-t~~~~i~~~~~-h 644 (842)
+|++|+.. +.|.+|++ .+++... ... .+...+..++|+|++++|++++.+ .|.+|++. ++.. ...... .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-VHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-EEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-EEeeEeec
Confidence 45666653 46877764 4565432 221 234468899999999999999888 99999997 5432 222211 1
Q ss_pred ccceEEEEEcCCCCc-EEEEEe-------------CCCcEEEEECC-CCceeeEEe-----ecCCeeEEEEeCCCCEEEE
Q 003177 645 STTVMSLDFHPSKED-LLCSCD-------------NNSEIRYWSIN-NGSCAGVFK-----CQSGATQMRFQPRLGRILA 704 (842)
Q Consensus 645 ~~~V~sl~fspdg~~-llasgs-------------~Dg~I~vwDl~-t~~~i~~~~-----~~~~i~~v~~sp~g~~l~~ 704 (842)
.+.+.+++|+|+++. ++++++ .++.+.+|++. .++....+. ....+.+++|+|+++++++
T Consensus 82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 123566899999886 344543 68999999997 466554443 2456899999999998887
Q ss_pred EEc-CCeEEEEECC-CCeEE--EEEe--CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCC--CCCce---eEEEeec
Q 003177 705 AAI-ENYISILDVE-TQVCR--LKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS--GSKGE---CIHELSC 771 (842)
Q Consensus 705 ~s~-dg~I~IwDl~-t~~~~--~~l~--~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s--~~~~~---~i~~~~~ 771 (842)
+.. ++.|++||+. +++.. ..+. .|...+..++|+|||++|++++ ++.|.+|++.. +.... .+..+..
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 775 6899999998 67543 3343 2456799999999999988876 67999998763 32110 1112221
Q ss_pred C----CC------ceEEEE-EeCCCCEEEEEEcCC------eEEEEECC-CCeEEE----EccCCCCeeEEEEeC---CC
Q 003177 772 T----GN------KFHSCV-FHPTFPSLLVIGCYE------TLELWNMT-ENKTLT----LSAHDKLVSSLAAST---VN 826 (842)
Q Consensus 772 ~----~~------~I~sv~-~spdg~~L~sgs~dg------~I~Iwdl~-~~~~~~----~~~h~~~V~sla~sp---dg 826 (842)
. .. .+..++ |+|+|++|++++.+. .|.+|++. ++++.. ...+...+..++|+| ||
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 1 11 478899 999999988876533 89999996 566543 223556678899999 89
Q ss_pred CEEEEEeCC-CcEEEcC
Q 003177 827 GMVASASHD-KCVKIWK 842 (842)
Q Consensus 827 ~~Lasgs~D-G~V~IWd 842 (842)
++|++++.+ +.|.||+
T Consensus 322 ~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TEEEEECSSSCEEEEEE
T ss_pred CEEEEEEcCCCeEEEEE
Confidence 999998864 8999995
No 159
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.82 E-value=2e-19 Score=199.24 Aligned_cols=272 Identities=12% Similarity=0.026 Sum_probs=192.3
Q ss_pred eEEEEEcCCCCEEEEEECC---CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceee
Q 003177 563 VESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 639 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~D---g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~ 639 (842)
+.+++|+|||++|+.+..+ ..|++||+.+++.......+...+..+.|+||+++|++++.++.|++||+.++.. ..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-QV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-EE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-EE
Confidence 7788999999998877553 3788999998876544433333333488999999999999999999999987653 33
Q ss_pred EeecCccceEE-------------------EEEcCCCCcEEEEE----eCCCcEEEEECCCCceeeEEeecCCeeEEEEe
Q 003177 640 TFTGHSTTVMS-------------------LDFHPSKEDLLCSC----DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 696 (842)
Q Consensus 640 ~~~~h~~~V~s-------------------l~fspdg~~llasg----s~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~s 696 (842)
....+...... ++|+|+++.+++.. ..+..|++||+.+++..........+..+.|+
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s 196 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR 196 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence 33333332222 35677777555433 45678999999998887777767779999999
Q ss_pred C-CCCEEEEEEcC------CeEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCC
Q 003177 697 P-RLGRILAAAIE------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSK 762 (842)
Q Consensus 697 p-~g~~l~~~s~d------g~I~IwDl~t~~~~~~l~~h-~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~ 762 (842)
| ++..|+.++.+ ..|.+||+..++........ ...+..++|+|||++|+.++ + +.|++||+.++..
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 9 77777776653 36889998766533322211 23578899999999777665 3 3499999987632
Q ss_pred ceeEEEeecCCCceEEEEEeC-CCCEEEEEE----------------cCCeEEEEECCCCeEEEEccCCC----------
Q 003177 763 GECIHELSCTGNKFHSCVFHP-TFPSLLVIG----------------CYETLELWNMTENKTLTLSAHDK---------- 815 (842)
Q Consensus 763 ~~~i~~~~~~~~~I~sv~~sp-dg~~L~sgs----------------~dg~I~Iwdl~~~~~~~~~~h~~---------- 815 (842)
..+..+. ... +.|+| ++++|++++ .+..|++||+.+++...+..+..
T Consensus 277 -~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 350 (396)
T 3c5m_A 277 -EEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQ 350 (396)
T ss_dssp -EEEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSS
T ss_pred -EEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccccc
Confidence 2222221 233 89999 999887755 23689999999887666665554
Q ss_pred -CeeEEEEeCCCCEEEEEeC-CCcEEEc
Q 003177 816 -LVSSLAASTVNGMVASASH-DKCVKIW 841 (842)
Q Consensus 816 -~V~sla~spdg~~Lasgs~-DG~V~IW 841 (842)
.+..++|+|||+.|+.++. ++...||
T Consensus 351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 351 ITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred CCCCCceEccCCCeEEEEecCCCCceEE
Confidence 2567899999998877664 5666665
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=2.6e-18 Score=186.63 Aligned_cols=274 Identities=10% Similarity=0.059 Sum_probs=189.9
Q ss_pred ccCCCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCC-CCeEEEEEcCCCCEEE-EEECCCcE
Q 003177 507 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLA-TGGHDKKA 584 (842)
Q Consensus 507 l~~~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~-~~V~sv~fSpdg~~La-sgs~Dg~I 584 (842)
+.....++++++.++.|.+|+.... . .+..+..+. ..+.+++|+|+|++++ ++..++.|
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~~~~----------------~---~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i 67 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDVASD----------------T---VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI 67 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTT----------------E---EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred ccCCCEEEEEeCCCCeEEEEECCCC----------------c---EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcE
Confidence 3445677888888999999965332 1 122333222 2578899999998665 44568999
Q ss_pred EEEecCCCeEEEEeccCC------CCeEEEEEcCCCCEEEEEeCC------------CeEEEEEcCCCCc--eeeEeecC
Q 003177 585 VLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSAD------------RTVRVWDTENPDY--SLRTFTGH 644 (842)
Q Consensus 585 ~vwd~~t~~~~~~l~~h~------~~I~~l~fspdg~~Latgs~D------------g~I~IWDl~t~~~--~i~~~~~h 644 (842)
.+||+.+++.+..+..+. ..+.+++|+|++++|++++.+ +.|.+||+.++.. .+..+. +
T Consensus 68 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~ 146 (349)
T 1jmx_B 68 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-M 146 (349)
T ss_dssp EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-C
T ss_pred EEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-C
Confidence 999999998887775332 337899999999999999865 8999999987432 123333 3
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecC-------------------------CeeEEEEeCCC
Q 003177 645 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------------------------GATQMRFQPRL 699 (842)
Q Consensus 645 ~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-------------------------~i~~v~~sp~g 699 (842)
...+.+++|+|++. +++ ++ +.|++||+.+++.+..+.... ....+++++++
T Consensus 147 ~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 222 (349)
T 1jmx_B 147 PRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 222 (349)
T ss_dssp CSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred CCcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence 44688999999998 654 43 449999999998887765432 22345555443
Q ss_pred CEEEEEEcC-CeEEEEECCCCeE-EEEEeCCCCCEEEEEEcC-CCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCce
Q 003177 700 GRILAAAIE-NYISILDVETQVC-RLKLQGHKNQVHSVCWNT-SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 776 (842)
Q Consensus 700 ~~l~~~s~d-g~I~IwDl~t~~~-~~~l~~h~~~V~sl~~sp-dg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I 776 (842)
......... ..+..+|..+++. ...+..+...+.+++|+| ++++++++ ++.|++||+.++ +.+..+.. ...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~ 297 (349)
T 1jmx_B 223 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR---KLIKAANL-DHTY 297 (349)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCC
T ss_pred cCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccC---eEEEEEcC-CCCc
Confidence 211111111 1222355555532 222334666889999999 99999988 899999999887 55555543 3457
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003177 777 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 809 (842)
Q Consensus 777 ~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~ 809 (842)
..++|+|++++|++++.++.|++||+.+++.+.
T Consensus 298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 298 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred cceEECCCCCEEEEecCCCeEEEEeccccceee
Confidence 789999999999998888999999999998773
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=217.28 Aligned_cols=272 Identities=11% Similarity=0.028 Sum_probs=189.7
Q ss_pred CeEEEEEcCCCCEEEEEEC---------CCcEEEEecCCCeEE--EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 562 KVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~---------Dg~I~vwd~~t~~~~--~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
.|.+++|||||++||+++. ++.|++||+.+++.+ ..+ ...+.+++|+|||++|+++. ++.|++||
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~ 136 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ 136 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence 4899999999999999876 789999999998773 222 35688999999999999985 78999999
Q ss_pred cCCCCceeeEeecCccce-----------------EEEEEcCCCCcEEEEEeCCC-------------------------
Q 003177 631 TENPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSCDNNS------------------------- 668 (842)
Q Consensus 631 l~t~~~~i~~~~~h~~~V-----------------~sl~fspdg~~llasgs~Dg------------------------- 668 (842)
+.++.....+..++...| .+++|+|||+.++++...++
T Consensus 137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 987654222223333322 48999999987665443322
Q ss_pred --------cEEEEECCCCcee--eEEe-------ecCCeeEEEEeCCCCEEEEEEcC----CeEEEEE----CCCCeEEE
Q 003177 669 --------EIRYWSINNGSCA--GVFK-------CQSGATQMRFQPRLGRILAAAIE----NYISILD----VETQVCRL 723 (842)
Q Consensus 669 --------~I~vwDl~t~~~i--~~~~-------~~~~i~~v~~sp~g~~l~~~s~d----g~I~IwD----l~t~~~~~ 723 (842)
.|++||+.+++.. ..+. +...+..++|+|++..+++.... ..|.+|| +.++++..
T Consensus 217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence 7889999987753 1111 23347899999996655554432 2488999 88776654
Q ss_pred EE----eCCCCCEE-----EEEEcCCCCEEEE--Ee-CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003177 724 KL----QGHKNQVH-----SVCWNTSGEYLAS--VS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 789 (842)
Q Consensus 724 ~l----~~h~~~V~-----sl~~spdg~~Las--gs-Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~ 789 (842)
.+ ..|...+. .+.|+|||+.|+. .. ++ .|++||+.++. ...+..+...+..+.++ ++..|+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d~~~i~ 371 (719)
T 1z68_A 297 TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV-TQDSLF 371 (719)
T ss_dssp GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE-CSSEEE
T ss_pred EEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE-eCCEEE
Confidence 44 46777676 8899999996554 33 45 67778876652 33445555667787777 888888
Q ss_pred EEEcC-----CeEEEEECC--CC--eEEEEc----cCCCCeeEEEEeCCCCEEEE-EeCC--CcEEEcC
Q 003177 790 VIGCY-----ETLELWNMT--EN--KTLTLS----AHDKLVSSLAASTVNGMVAS-ASHD--KCVKIWK 842 (842)
Q Consensus 790 sgs~d-----g~I~Iwdl~--~~--~~~~~~----~h~~~V~sla~spdg~~Las-gs~D--G~V~IWd 842 (842)
+.+.+ +.+++|.+. ++ +...+. +|...+..+.|+|++++|+. ++.+ ..+.+||
T Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp EEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred EEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 88876 677777764 34 223332 26677889999999987664 4333 3456664
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=2.3e-17 Score=182.82 Aligned_cols=246 Identities=12% Similarity=0.081 Sum_probs=175.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEecC-CCeEEEEeccC-CCCeEEEEEcCCCCE--EEEEe-------------
Q 003177 559 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEH-TQWITDVRFSPSLSR--LATSS------------- 621 (842)
Q Consensus 559 H~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~-t~~~~~~l~~h-~~~I~~l~fspdg~~--Latgs------------- 621 (842)
+...+..++|+|||++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 44568899999999999999888 99999997 77765433211 123567899999994 45553
Q ss_pred CCCeEEEEEcCCCCceeeEee----cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCceee--EEee---cCCee
Q 003177 622 ADRTVRVWDTENPDYSLRTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAG--VFKC---QSGAT 691 (842)
Q Consensus 622 ~Dg~I~IWDl~t~~~~i~~~~----~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~--~~~~---~~~i~ 691 (842)
.++.+.+|+++........+. .+...+.+++|+|+|+.++++...++.|++||+. +++... .+.. ...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999974333222222 2456799999999998766555457899999998 676532 3331 35689
Q ss_pred EEEEeCCCCEEEEEEc-CCeEEEEECC--CCeEE---EEEeC-------CCC------CEEEEE-EcCCCCEEEEEe--C
Q 003177 692 QMRFQPRLGRILAAAI-ENYISILDVE--TQVCR---LKLQG-------HKN------QVHSVC-WNTSGEYLASVS--D 749 (842)
Q Consensus 692 ~v~~sp~g~~l~~~s~-dg~I~IwDl~--t~~~~---~~l~~-------h~~------~V~sl~-~spdg~~Lasgs--D 749 (842)
.++|+|+++++++++. ++.|.+|+++ +++.. ..+.. |.. .+..++ |+|||++|+++. +
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999999988876 6899999765 45442 12221 122 488999 999999888765 3
Q ss_pred C-----eEEEEEcC-CCCCceeEE-EeecCCCceEEEEEeC---CCCEEEEEEcC-CeEEEEECCCCe
Q 003177 750 E-----LVRVWSIG-SGSKGECIH-ELSCTGNKFHSCVFHP---TFPSLLVIGCY-ETLELWNMTENK 806 (842)
Q Consensus 750 g-----~I~IwDl~-s~~~~~~i~-~~~~~~~~I~sv~~sp---dg~~L~sgs~d-g~I~Iwdl~~~~ 806 (842)
+ .|.+|++. ++. ...+. ....+...+..++|+| +|++|++++.+ +.|.+|++....
T Consensus 277 ~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp STTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 3 89999996 442 11111 2333445567789999 89999999875 799999987763
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=7.8e-19 Score=206.86 Aligned_cols=230 Identities=10% Similarity=0.058 Sum_probs=178.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeeEeecCc-cceEEEEEcCCCCcEEEEEeC---CCcEEEEEC
Q 003177 601 HTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN---NSEIRYWSI 675 (842)
Q Consensus 601 h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~t~~~~i~~~~~h~-~~V~sl~fspdg~~llasgs~---Dg~I~vwDl 675 (842)
+..+|++++|+|||++||+++. ||++.||+++++. ...+..|. ..|.+++|+|+ .++++++. +....+|.+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEE
Confidence 3567999999999999999887 9999999996543 45555555 68999999998 47777664 454556544
Q ss_pred CC---CceeeEEeecCCeeEEEEeCCCCE-EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C-
Q 003177 676 NN---GSCAGVFKCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D- 749 (842)
Q Consensus 676 ~t---~~~i~~~~~~~~i~~v~~sp~g~~-l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D- 749 (842)
.. +... .+.....+...+|+|+++. +++.+.++.+.+||+.+++.......+. .+++|+|||++|++++ +
T Consensus 96 ~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp ETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEE
T ss_pred eccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcC
Confidence 32 2222 3333445667799998865 4455556667799999987765554333 7899999999999776 5
Q ss_pred ---CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEEccCCCCeeEEE---
Q 003177 750 ---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKLVSSLA--- 821 (842)
Q Consensus 750 ---g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg--~I~Iwdl~~~~~~~~~~h~~~V~sla--- 821 (842)
..|++||+.++. . ..+..+...+..++|+|||+.|+++..++ .|++||+.+++...+..|...+..++
T Consensus 172 ~~~~~i~~~d~~~g~---~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGG---L-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTA 247 (582)
T ss_dssp TTEEEEEEEETTTCC---C-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSE
T ss_pred CCCeEEEEEcCCCCC---c-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhcc
Confidence 689999998873 2 35566778899999999999999888888 89999999998876667777777777
Q ss_pred -----EeCCCCEEEEEeCCCcEEEcC
Q 003177 822 -----ASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 822 -----~spdg~~Lasgs~DG~V~IWd 842 (842)
|+|||.++++++.||.++||+
T Consensus 248 ~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 248 ITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred ccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 999999999999999999995
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=6e-18 Score=205.59 Aligned_cols=265 Identities=13% Similarity=0.074 Sum_probs=192.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCC-----eEEEEEcCCCCEEEEEeCC---------CeE
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---------RTV 626 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~-----I~~l~fspdg~~Latgs~D---------g~I 626 (842)
....++.|+|||++|+++ |+.|++||+.++++...+.+|... ...+.|+|||++|++++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999999886 899999999999988888777643 2347899999999999876 566
Q ss_pred EEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec-------------------
Q 003177 627 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------------- 687 (842)
Q Consensus 627 ~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~------------------- 687 (842)
.+||+.++. ...+..|...+..++|+|||+.++++ .++.|++||+.+++........
T Consensus 95 ~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 95 DIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 799999865 44566778889999999999977654 3789999999987755432211
Q ss_pred CCeeEEEEeCCCCEEEEEEcCC------------------------------------eEEEEECCC---Ce--EEEEEe
Q 003177 688 SGATQMRFQPRLGRILAAAIEN------------------------------------YISILDVET---QV--CRLKLQ 726 (842)
Q Consensus 688 ~~i~~v~~sp~g~~l~~~s~dg------------------------------------~I~IwDl~t---~~--~~~~l~ 726 (842)
.....+.|+|||+.|+.+..|. .|++||+.+ +. ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 1123489999999998876321 588899988 72 222333
Q ss_pred ------CCCCCEEEEEEcCCCCEEEEEe--C---CeEEEEEcCCCCC------ceeEEEeecCCCce-----EEEEEeCC
Q 003177 727 ------GHKNQVHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSK------GECIHELSCTGNKF-----HSCVFHPT 784 (842)
Q Consensus 727 ------~h~~~V~sl~~spdg~~Lasgs--D---g~I~IwDl~s~~~------~~~i~~~~~~~~~I-----~sv~~spd 784 (842)
+|...+..++|+|||++++... + ..|++||+.++.. ...+. -..+...+ ..++|+||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-EMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-EECSSSCSSSSSCCCCEECTT
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-eccCCceEccCcCCCceEcCC
Confidence 3777899999999999766654 2 2799999988741 11111 12334333 36789999
Q ss_pred CCEEE-EEEc-CC--eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEe
Q 003177 785 FPSLL-VIGC-YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 785 g~~L~-sgs~-dg--~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs 833 (842)
|+.|+ ..+. +| .|++||+.+++...+......|..+.+ +|++.|+..+
T Consensus 330 G~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~ 381 (740)
T 4a5s_A 330 GNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYIS 381 (740)
T ss_dssp SSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEE
T ss_pred CCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEE
Confidence 99877 5654 33 799999999888877766667776653 4466554433
No 165
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=8.1e-18 Score=191.75 Aligned_cols=212 Identities=14% Similarity=0.152 Sum_probs=160.1
Q ss_pred CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---------ceee-----EeecCccc
Q 003177 582 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---------YSLR-----TFTGHSTT 647 (842)
Q Consensus 582 g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~---------~~i~-----~~~~h~~~ 647 (842)
+.|++|+.... .+...++.+++++++.+|++++.|+ |+||+..... ..+. ....+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 46888764321 2345688999999999999999888 8998754210 0011 11235667
Q ss_pred eEEEEEcCCCCcEEE---EEeCCCcEEEEECCCC--------ceeeEEe----ecCCeeEEEEeCC-CCEEEEEEcCCeE
Q 003177 648 VMSLDFHPSKEDLLC---SCDNNSEIRYWSINNG--------SCAGVFK----CQSGATQMRFQPR-LGRILAAAIENYI 711 (842)
Q Consensus 648 V~sl~fspdg~~lla---sgs~Dg~I~vwDl~t~--------~~i~~~~----~~~~i~~v~~sp~-g~~l~~~s~dg~I 711 (842)
|.+++|+|++..+++ +++.|+.|++||+.++ +.+..+. +...|.+++|+|+ +..|++++.||.|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 999999999886665 7888999999998754 2222222 3567999999998 7889999999999
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------CCceEEEEEeC
Q 003177 712 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHP 783 (842)
Q Consensus 712 ~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------~~~I~sv~~sp 783 (842)
++||++++..+....+|...|.+++|+|+|++|++++ |+.|++||++ + .....+..+ ...+.+++|++
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L---QEKKVIPCPPFYESDHPVRVLDVLWIG 250 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C---CEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C---cccccccCCcccCCCCceeEEEEEEec
Confidence 9999999987777778999999999999999999999 9999999998 3 233333322 23789999999
Q ss_pred CCCEEEEEE-cCC------eEEEEECCCC
Q 003177 784 TFPSLLVIG-CYE------TLELWNMTEN 805 (842)
Q Consensus 784 dg~~L~sgs-~dg------~I~Iwdl~~~ 805 (842)
++.++++.+ .+| .+++|++...
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccC
Confidence 988776544 333 4999999764
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=1.9e-17 Score=197.74 Aligned_cols=280 Identities=10% Similarity=0.054 Sum_probs=198.1
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEE--ECCCcEEEEecCCCeEEEEeccCCCCeE---------EEEEc--CCCCE-EEEE
Q 003177 555 LIPASTSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWIT---------DVRFS--PSLSR-LATS 620 (842)
Q Consensus 555 ~l~gH~~~V~sv~fSpdg~~Lasg--s~Dg~I~vwd~~t~~~~~~l~~h~~~I~---------~l~fs--pdg~~-Latg 620 (842)
.+.+|...|.+++|++++-++++. +.++...||....+.....+..|...+. .+.|+ ||+++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 456788999999999886666666 4578899998655555667777776666 66665 99998 7766
Q ss_pred eC-CCeEEEEEcC--C-CCceeeEeec-----CccceEEEEEcCCCCcEEEEEeCC----------CcEEEEECCC----
Q 003177 621 SA-DRTVRVWDTE--N-PDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNN----------SEIRYWSINN---- 677 (842)
Q Consensus 621 s~-Dg~I~IWDl~--t-~~~~i~~~~~-----h~~~V~sl~fspdg~~llasgs~D----------g~I~vwDl~t---- 677 (842)
+. +..|++|++. . +. ...+.. |...+.+++|+|||+.++++.. + ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAE-EFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEE-EECSSSTTCEEEEEEEEETTSTTTT
T ss_pred ECCCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEe-cccCCCCCCceeEEEEEECCCCccc
Confidence 54 4566666665 2 22 344555 6778899999999987665543 4 5899999988
Q ss_pred --CceeeEE-eecCCeeEEEEeCCCCEEEEEEcC--------CeEEEEECC-CC---eEEEEEeCCCCCEEEEEEcCCCC
Q 003177 678 --GSCAGVF-KCQSGATQMRFQPRLGRILAAAIE--------NYISILDVE-TQ---VCRLKLQGHKNQVHSVCWNTSGE 742 (842)
Q Consensus 678 --~~~i~~~-~~~~~i~~v~~sp~g~~l~~~s~d--------g~I~IwDl~-t~---~~~~~l~~h~~~V~sl~~spdg~ 742 (842)
++..... .....+..++|+|+|++|+.++.+ ..|++||+. ++ +.......|...+..++|+|||+
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS 254 (662)
T ss_dssp CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence 6654444 444567789999999999988865 379999999 56 44444455678899999999999
Q ss_pred EEEEEe-CC--eEEEEEcCCCCCceeEEEeecCCCc--------eEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEE
Q 003177 743 YLASVS-DE--LVRVWSIGSGSKGECIHELSCTGNK--------FHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLT 809 (842)
Q Consensus 743 ~Lasgs-Dg--~I~IwDl~s~~~~~~i~~~~~~~~~--------I~sv~~spdg~~L~sgs~dg~I~Iw--dl~~~~~~~ 809 (842)
+++++. ++ .|++||+.++ ........+... +..++|++++..++++.. +.++|| |+.+++...
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~ 330 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATG---AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVD 330 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTC---CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEE
T ss_pred EEEEECCCCCeEEEEEECCCC---ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEE
Confidence 777776 77 6667776555 222222222111 457899999998888888 887777 777788777
Q ss_pred EccCCCCeeEE-EEeCCCCEEEEEeCCCcEEEc
Q 003177 810 LSAHDKLVSSL-AASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 810 ~~~h~~~V~sl-a~spdg~~Lasgs~DG~V~IW 841 (842)
+..|...+..+ +++.+.-++++++.+....||
T Consensus 331 l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 331 AAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp CCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred ecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 77888888877 554433344455566555554
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=7.1e-17 Score=196.15 Aligned_cols=295 Identities=14% Similarity=0.092 Sum_probs=197.7
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCC-----eEEEEEcCCCCEEEEEECC-----
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-----VESCHFSPDGKLLATGGHD----- 581 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~-----V~sv~fSpdg~~Lasgs~D----- 581 (842)
.+++++ |++|.+|...... +...+.+|... ...++|||||++|++++.+
T Consensus 29 ~~~~~~--~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 29 EYLYKQ--ENNILVFNAEYGN-------------------SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR 87 (740)
T ss_dssp EEEEEE--TTEEEEEETTTCC-------------------EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred cEEEEc--CCcEEEEECCCCc-------------------eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence 566665 7888888654331 12334555432 3458899999999998876
Q ss_pred ----CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccce---------
Q 003177 582 ----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--------- 648 (842)
Q Consensus 582 ----g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V--------- 648 (842)
+.+++||+.+++.. .+..|...+..++|+|||+.||.++ |+.|++||+.++.....+..++...+
T Consensus 88 ~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp SCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred EccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence 56779999998765 4667888899999999999999984 78999999987664322333333323
Q ss_pred --------EEEEEcCCCCcEEEEEeCCC-----------------------------------cEEEEECCC---Cc---
Q 003177 649 --------MSLDFHPSKEDLLCSCDNNS-----------------------------------EIRYWSINN---GS--- 679 (842)
Q Consensus 649 --------~sl~fspdg~~llasgs~Dg-----------------------------------~I~vwDl~t---~~--- 679 (842)
..+.|+|||+.+++...+++ .|++||+.+ ++
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence 34899999997765543222 588899988 73
Q ss_pred eeeEEe------ecCCeeEEEEeCCCCEEEEEEcC----CeEEEEECCCCe----EEE--EE--eCCCCCEE-----EEE
Q 003177 680 CAGVFK------CQSGATQMRFQPRLGRILAAAIE----NYISILDVETQV----CRL--KL--QGHKNQVH-----SVC 736 (842)
Q Consensus 680 ~i~~~~------~~~~i~~v~~sp~g~~l~~~s~d----g~I~IwDl~t~~----~~~--~l--~~h~~~V~-----sl~ 736 (842)
...... +...+..++|+|+++.++..... ..|.+||+.+++ +.. .+ ..|...|. .+.
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~ 325 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH 325 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCE
T ss_pred EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCce
Confidence 322221 22347889999999866665443 379999998876 221 11 34655554 789
Q ss_pred EcCCCCEEE-EEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-------CeEEEEECCC
Q 003177 737 WNTSGEYLA-SVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-------ETLELWNMTE 804 (842)
Q Consensus 737 ~spdg~~La-sgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d-------g~I~Iwdl~~ 804 (842)
|+|||+.|+ ..+ +| .|++||+.++ .+ ..+......+..+.. ++++.|+..+.. ..|+..++.+
T Consensus 326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~---~~-~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g 400 (740)
T 4a5s_A 326 FTLDGNSFYKIISNEEGYRHICYFQIDKK---DC-TFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLID 400 (740)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEETTCS---SC-EESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred EcCCCCEEEEEEEcCCCceEEEEEECCCC---ce-EecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence 999999877 565 44 7889998765 22 233334555655443 447777776654 2566666666
Q ss_pred CeEE-EEcc----CCCCeeEEEEeCCCCEEEEEeC
Q 003177 805 NKTL-TLSA----HDKLVSSLAASTVNGMVASASH 834 (842)
Q Consensus 805 ~~~~-~~~~----h~~~V~sla~spdg~~Lasgs~ 834 (842)
+... .+.. ....+..+.|+|++++++....
T Consensus 401 ~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s 435 (740)
T 4a5s_A 401 YTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS 435 (740)
T ss_dssp EEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred CCcceeeccccCCCCCceEEEEECCCCCEEEEEeC
Confidence 5543 3321 2467889999999997765543
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=1.6e-16 Score=176.41 Aligned_cols=263 Identities=10% Similarity=0.100 Sum_probs=193.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEEC----------CCcEEEEecCCCeEEEEeccC------CCCeEEEEEcCCCCEE
Q 003177 554 QLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRL 617 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~Lasgs~----------Dg~I~vwd~~t~~~~~~l~~h------~~~I~~l~fspdg~~L 617 (842)
..++.+..+ .++|+|||++|+++.. ++.|.+||..+++.+.++... ......++|+|||++|
T Consensus 45 ~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l 122 (361)
T 2oiz_A 45 GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFI 122 (361)
T ss_dssp EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEE
T ss_pred EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEE
Confidence 344555544 8999999999998863 578999999999988877532 3456789999999999
Q ss_pred EEEeC--CCeEEEEEcCCCCceeeE-eecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CceeeEE------eec
Q 003177 618 ATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVF------KCQ 687 (842)
Q Consensus 618 atgs~--Dg~I~IWDl~t~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~------~~~ 687 (842)
+++.. +++|.+||+.+.+. +.. +. +. ....+.+.|++...+++.+.||.+.+|++.. ++..... ...
T Consensus 123 ~v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~ 199 (361)
T 2oiz_A 123 VLQNASPATSIGIVDVAKGDY-VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVK 199 (361)
T ss_dssp EEEEESSSEEEEEEETTTTEE-EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTT
T ss_pred EEECCCCCCeEEEEECCCCcE-EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCC
Confidence 99874 58999999998643 444 33 22 2334667888767777888999999999865 5544222 111
Q ss_pred CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEEEEeCC------C----CCEEEEEEcCCCCEEEEEe-------
Q 003177 688 SGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQGH------K----NQVHSVCWNTSGEYLASVS------- 748 (842)
Q Consensus 688 ~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~--~~~~l~~h------~----~~V~sl~~spdg~~Lasgs------- 748 (842)
.....+.+++++..++..+.++.|+++|+.... ....+... . .....++|+|++..++++.
T Consensus 200 ~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~ 279 (361)
T 2oiz_A 200 DDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEG 279 (361)
T ss_dssp TSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTT
T ss_pred CCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcc
Confidence 222233446777788888889999999997543 22222210 1 1111378999988777653
Q ss_pred -----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC--eEEEE-ccCCCCeeEE
Q 003177 749 -----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN--KTLTL-SAHDKLVSSL 820 (842)
Q Consensus 749 -----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~--~~~~~-~~h~~~V~sl 820 (842)
.+.|.+||+.+. +.+..+..+. +..++|+|+|++|++++. +.|.+||..++ +++.. ..+......+
T Consensus 280 ~~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~ 353 (361)
T 2oiz_A 280 THKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQV 353 (361)
T ss_dssp CTTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEE
T ss_pred cccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEE
Confidence 237999999988 7888887766 999999999999988886 99999999999 88855 5788889999
Q ss_pred EEeCCCC
Q 003177 821 AASTVNG 827 (842)
Q Consensus 821 a~spdg~ 827 (842)
+++|+|+
T Consensus 354 ~~~p~G~ 360 (361)
T 2oiz_A 354 QFHPVGG 360 (361)
T ss_dssp EECCCSC
T ss_pred EecCCCC
Confidence 9999985
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=1.8e-16 Score=176.00 Aligned_cols=263 Identities=8% Similarity=0.051 Sum_probs=188.9
Q ss_pred CCCEEEEEE------CCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCC
Q 003177 571 DGKLLATGG------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENP 634 (842)
Q Consensus 571 dg~~Lasgs------~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~----------Dg~I~IWDl~t~ 634 (842)
+++++++.. .|+.|++||..+++.+..+..+..+ .++|+||+++|++++. ++.|.+||+.+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 556666553 3679999999999998888776655 8999999999999873 678999999876
Q ss_pred CceeeEeec------CccceEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCceeeE-EeecCCeeEEEEeCCC-CEEEEE
Q 003177 635 DYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GRILAA 705 (842)
Q Consensus 635 ~~~i~~~~~------h~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~-~~~~~~i~~v~~sp~g-~~l~~~ 705 (842)
+. +..+.. +......++|+|+|++++++... ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.
T Consensus 92 ~~-~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TF-EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CE-EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TEEEEEECTTSSSEEEEE
T ss_pred cE-EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-CcceeEEcCCCCeeEEEE
Confidence 53 444432 22456789999999977766554 68999999999988877 5543 33335677765 577888
Q ss_pred EcCCeEEEEECCC-CeEEEEE------eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC----
Q 003177 706 AIENYISILDVET-QVCRLKL------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---- 773 (842)
Q Consensus 706 s~dg~I~IwDl~t-~~~~~~l------~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~---- 773 (842)
+.||.+.+|++.. ++..... ..+..++ .+.+++++..++..+ ++.|+++|+..... ..+..+....
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDK 247 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc-eecccccccCcccc
Confidence 8999999999865 5444221 1122222 334467777777767 88999999976431 2222221110
Q ss_pred ------CceEEEEEeCCCCEEEEEEc-----------CCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCC
Q 003177 774 ------NKFHSCVFHPTFPSLLVIGC-----------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 835 (842)
Q Consensus 774 ------~~I~sv~~spdg~~L~sgs~-----------dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~D 835 (842)
.....++|+|++..++++.. .+.|.+||+.+++.+ ++..+. +.+|+|+|||++|++++.
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-
Confidence 11123689999998888764 348999999999988 455554 999999999999998887
Q ss_pred CcEEEcC
Q 003177 836 KCVKIWK 842 (842)
Q Consensus 836 G~V~IWd 842 (842)
+.|.|||
T Consensus 325 ~~v~v~D 331 (361)
T 2oiz_A 325 GNVNVYD 331 (361)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 9999996
No 170
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=4.9e-16 Score=169.45 Aligned_cols=252 Identities=11% Similarity=0.101 Sum_probs=179.2
Q ss_pred CeEEEEEcCCCCEEEEEE---------CCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---C--eEE
Q 003177 562 KVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R--TVR 627 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs---------~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g--~I~ 627 (842)
.|..+.| ||++|+... .++.|++||+.+++... + ..+.+++|+|||++|++++.+ + .|+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 3667777 888887653 25689999999877543 3 568899999999999988754 3 377
Q ss_pred EEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeC--------------------------CCcEEEEECCCCcee
Q 003177 628 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------------------------NSEIRYWSINNGSCA 681 (842)
Q Consensus 628 IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~--------------------------Dg~I~vwDl~t~~~i 681 (842)
+||+.++. ...+..+.. +.+++|+|+++.+++++.. ...|++||+.+++.+
T Consensus 89 ~~~~~~g~--~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 89 VADLETLS--SKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEETTTTE--EEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEECCCCc--eEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 77887644 233333334 9999999999877766532 357999999988874
Q ss_pred eEEeecCCeeEEEEeCCCCEEEEEEcCC---------eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C--
Q 003177 682 GVFKCQSGATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-- 749 (842)
Q Consensus 682 ~~~~~~~~i~~v~~sp~g~~l~~~s~dg---------~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D-- 749 (842)
..+... .+..+.|+|++ .++++..++ .|.++| +++.. .+..+ ..+..+ +|||++|+.++ +
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~ 237 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFEK-VSFYAV--DSDGERILLYGKPEK 237 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE-ESEEEE--EECSSCEEEEECCSS
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-EeccC-cceeeE--CCCCCEEEEEEcccc
Confidence 444444 88899999998 666665432 455556 55543 33334 455544 99999887766 3
Q ss_pred ------CeEEEEEcCCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEE
Q 003177 750 ------ELVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA 822 (842)
Q Consensus 750 ------g~I~IwDl~s~~~~~~i~~~~~~~~~I~s-v~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~ 822 (842)
..|++|| ++ ........+...+.. +.|+ ++ .+++++.++.++|| +.+++...+..+...|.+++|
T Consensus 238 ~~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~ 309 (347)
T 2gop_A 238 KYMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDV 309 (347)
T ss_dssp SCCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEE
T ss_pred CCccccceEEEEC--CC---ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeee
Confidence 2677777 33 333333445667776 8999 88 88888899999999 877777666677888999999
Q ss_pred eCCCCEEEEEeCCCcE-EEc
Q 003177 823 STVNGMVASASHDKCV-KIW 841 (842)
Q Consensus 823 spdg~~Lasgs~DG~V-~IW 841 (842)
++ .++++++.++.. .||
T Consensus 310 s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 310 DE--IVVYLKETATRLRELF 327 (347)
T ss_dssp SS--SEEEEEECSSSCCEEE
T ss_pred eC--cEEEEEcCCCChHHhe
Confidence 99 677777777654 555
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.74 E-value=7.2e-16 Score=168.42 Aligned_cols=240 Identities=15% Similarity=0.114 Sum_probs=182.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECC------------------------CcEEEEecCCCeEEEEec-cCCCCeEEEEEcCCC
Q 003177 560 TSKVESCHFSPDGKLLATGGHD------------------------KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSL 614 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~D------------------------g~I~vwd~~t~~~~~~l~-~h~~~I~~l~fspdg 614 (842)
-+.|.+|+++++|+++++...+ +.|.+||..+++.+..+. .+-..+..|++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3569999999999999888777 479999999898877664 455679999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeEe---------ecCccceEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCceeeEE
Q 003177 615 SRLATSSADRTVRVWDTENPDYSLRTF---------TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVF 684 (842)
Q Consensus 615 ~~Latgs~Dg~I~IWDl~t~~~~i~~~---------~~h~~~V~sl~fspdg~~llasgs-~Dg~I~vwDl~t~~~i~~~ 684 (842)
+++++...++.|++||.+.....+..+ .++......|+++|++..++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999987543234444 234457899999994455776775 689999999 557777666
Q ss_pred eec-----------CCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEE---
Q 003177 685 KCQ-----------SGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV--- 747 (842)
Q Consensus 685 ~~~-----------~~i~~v~~sp~g~~l~~~s-~dg~I~IwDl~t~~~~~~l~--~h~~~V~sl~~spdg~~Lasg--- 747 (842)
... .....++++|+++.++++. .++.|.+||..+++.+..+. .+...+.+++|+| +..+++.
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 432 2278999999955555554 57899999999888888774 3566889999999 4333332
Q ss_pred ----e-CCeEEEEEcCCCCCceeEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 748 ----S-DELVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 748 ----s-Dg~I~IwDl~s~~~~~~i~~~---~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
. +..|++||+.++ ..+..+ ..+...+..++++++|..+++...++.|++|++..
T Consensus 261 ~v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CTTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EeccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 2 348999999887 566665 35566789999999996666666678999999754
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.74 E-value=6.2e-16 Score=168.01 Aligned_cols=268 Identities=8% Similarity=0.032 Sum_probs=191.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeE
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~ 640 (842)
..|.+++|++++..++..+.++.+++| .++....+..+...+.+++|++++++++++..++.|.+||..++.. ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-EEE
Confidence 447888999988888777888999999 4456667777778889999999999888888899999999987653 233
Q ss_pred eecCccceEEEEEcCCCCcEEEEEeCC----CcEEEEECCCCceeeEEe---ecCCeeEEEEeCCCCEEEEEEc------
Q 003177 641 FTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAI------ 707 (842)
Q Consensus 641 ~~~h~~~V~sl~fspdg~~llasgs~D----g~I~vwDl~t~~~i~~~~---~~~~i~~v~~sp~g~~l~~~s~------ 707 (842)
...+...+.+++|++++. ++++...+ +.|.+||..+++....+. ....+..++++|++..+++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 335667899999999986 55555555 689999998877653332 2345889999999876665543
Q ss_pred CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCC-CCCceeE-----EEeecCCCceEEE
Q 003177 708 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS-GSKGECI-----HELSCTGNKFHSC 779 (842)
Q Consensus 708 dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s-~~~~~~i-----~~~~~~~~~I~sv 779 (842)
.+.|..||..+++..... .+...+.+++|+|++++|+.+. ++.|++||+.+ +.....+ ..+.. ...+..+
T Consensus 161 ~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i 238 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSC 238 (333)
T ss_dssp CEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEE
T ss_pred CceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCce
Confidence 356777887765443322 2334578999999998665554 78999999964 2211111 11111 2467889
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCC------CeeEEEEeCCCCEEEEEeCC
Q 003177 780 VFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDK------LVSSLAASTVNGMVASASHD 835 (842)
Q Consensus 780 ~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~------~V~sla~spdg~~Lasgs~D 835 (842)
+++++|..+++...++.|.+||........+..+.. .+.+++|++|++.|+.++.+
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999999876666677899999985433334433332 68999999998777666555
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.73 E-value=1.7e-14 Score=169.46 Aligned_cols=308 Identities=10% Similarity=0.019 Sum_probs=220.7
Q ss_pred ceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecC-
Q 003177 512 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE- 590 (842)
Q Consensus 512 ~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~- 590 (842)
.++++...++.|.+++.... ..+..+... ..+.++.|+|||++|++++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~-------------------~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTY-------------------EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp EEEEEETTTTEEEEEETTTC-------------------CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred eEEEEeCCCCeEEEEECCCC-------------------eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 45555666677777754322 112233322 246789999999999999999999999996
Q ss_pred -CCeEEEEeccCCCCeEEEEEc----CCCCEEEEEeC-CCeEEEEEcCCCCceeeEeec----------Cc-cceEEEEE
Q 003177 591 -SFTVKSTLEEHTQWITDVRFS----PSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HS-TTVMSLDF 653 (842)
Q Consensus 591 -t~~~~~~l~~h~~~I~~l~fs----pdg~~Latgs~-Dg~I~IWDl~t~~~~i~~~~~----------h~-~~V~sl~f 653 (842)
+++.+..+.... ....++|+ |||+++++++. ++.|.|+|..+.+. +..+.. |. ..+..+.+
T Consensus 228 ~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 228 KEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp SSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred CCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEEE
Confidence 888888886544 46799999 69999887776 58999999887653 443321 21 26788999
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCceee--EEeecCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEeC---
Q 003177 654 HPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG--- 727 (842)
Q Consensus 654 spdg~~llasgs~Dg~I~vwDl~t~~~i~--~~~~~~~i~~v~~sp~g~~l~~~s~-dg~I~IwDl~t~~~~~~l~~--- 727 (842)
++++..+++....+|.|.++|....+... .+........+.|+|+++++++++. ++.|.++|+.+++.+..+..
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~ 385 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 385 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence 99988888888888999999998765333 3334456778999999999988774 68999999999988776653
Q ss_pred --CCCCEEEEEEcCCCC-EEEEEe--CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEEc-----
Q 003177 728 --HKNQVHSVCWNTSGE-YLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGC----- 793 (842)
Q Consensus 728 --h~~~V~sl~~spdg~-~Lasgs--Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~----- 793 (842)
|.+.-..+ ++|++. +++++. ++.|.++|..+... .+.+..+......-..+.++|+++++++...
T Consensus 386 ~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~ 464 (567)
T 1qks_A 386 TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA 464 (567)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc
Confidence 33222222 578744 445554 68999999987322 3567777665444455778999999998773
Q ss_pred --CCeEEEEECCCC-----e-E-EEEc--------cCCCCeeEEEEeCCCCEEEEEeC-----CCcEEEcC
Q 003177 794 --YETLELWNMTEN-----K-T-LTLS--------AHDKLVSSLAASTVNGMVASASH-----DKCVKIWK 842 (842)
Q Consensus 794 --dg~I~Iwdl~~~-----~-~-~~~~--------~h~~~V~sla~spdg~~Lasgs~-----DG~V~IWd 842 (842)
.+.|.+||+.+. . . ..+. .....+..+.|+++|+.+..+.. ++.|.|+|
T Consensus 465 ~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 465 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 359999999876 2 1 1221 12457899999999997776643 68888875
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=4.6e-15 Score=157.60 Aligned_cols=237 Identities=10% Similarity=0.153 Sum_probs=175.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEec------cCCCCeEEEEE-cCCCCEEEEEeC-CCeEEEE
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQWITDVRF-SPSLSRLATSSA-DRTVRVW 629 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~------~h~~~I~~l~f-spdg~~Latgs~-Dg~I~IW 629 (842)
+|-..+.+++++++++++++...++.|.+||.. ++.+..+. +|...+.++++ .+++.++++... ++.|++|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999977 56666653 24467899999 467766666543 8899999
Q ss_pred EcCCCCceeeEee-cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee---cCCeeEEEEeCCCCEEEEE
Q 003177 630 DTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAA 705 (842)
Q Consensus 630 Dl~t~~~~i~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~~v~~sp~g~~l~~~ 705 (842)
|.+ +.. +..+. .+...+.++++++++. ++++...++.|.+||.. ++.+..+.. ...+..+++++++..+++.
T Consensus 106 d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 106 NQY-GQF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp CTT-SCE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred CCC-CcE-EEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 943 343 44443 3446789999999986 66677778999999965 566666543 2358899999998766666
Q ss_pred EcCCeEEEEECCCCeEEEEEeCC--CCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeecCC--CceEEE
Q 003177 706 AIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTG--NKFHSC 779 (842)
Q Consensus 706 s~dg~I~IwDl~t~~~~~~l~~h--~~~V~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~~~--~~I~sv 779 (842)
..++.|++||.. +..+..+..+ ...+.+++++++|.++++.. ++ .|.+||.. + ..+..+..+. ..+..+
T Consensus 182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDV 256 (286)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEE
T ss_pred CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C---CEEEEEcccCCCCcceeE
Confidence 668999999985 4555556433 36789999999999888877 65 99999954 3 3445554433 347899
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCC
Q 003177 780 VFHPTFPSLLVIGCYETLELWNMTEN 805 (842)
Q Consensus 780 ~~spdg~~L~sgs~dg~I~Iwdl~~~ 805 (842)
+++|+|..++ ++.++.|++|++...
T Consensus 257 ~~~~~g~l~v-s~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 257 ALMDDGSVVL-ASKDYRLYIYRYVQL 281 (286)
T ss_dssp EEETTTEEEE-EETTTEEEEEECSCC
T ss_pred EECCCCcEEE-ECCCCeEEEEEcccc
Confidence 9999997444 477899999998653
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.72 E-value=5.9e-16 Score=171.36 Aligned_cols=245 Identities=12% Similarity=0.108 Sum_probs=169.2
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEE--EcCCCCEEEEEe----------
Q 003177 554 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR--FSPSLSRLATSS---------- 621 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~--fspdg~~Latgs---------- 621 (842)
....+|...+.+++|+|||+.|++++.++.|++||+.+++....+..+...+.... +++++++++...
T Consensus 74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~ 153 (388)
T 3pe7_A 74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT 153 (388)
T ss_dssp ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccc
Confidence 33455666666788999999999999999999999999988777766666665444 489999887532
Q ss_pred ------------CCCeEEEEEcCCCCceeeEeecCccceEEEEEcC-CCCcEEEEEeC-----CCcEEEEECCCCceeeE
Q 003177 622 ------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN-----NSEIRYWSINNGSCAGV 683 (842)
Q Consensus 622 ------------~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fsp-dg~~llasgs~-----Dg~I~vwDl~t~~~i~~ 683 (842)
.+..|++||+.++. ...+..+...+..+.|+| ++..++++... ...|.++|+..+.....
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (388)
T 3pe7_A 154 DWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV 231 (388)
T ss_dssp SHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES
T ss_pred ccchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe
Confidence 34689999998865 455556777899999999 88766655542 34788889876654443
Q ss_pred EeecC--CeeEEEEeCCCCEEEEEEc-CC----eEEEEECCCCeEE--EEEeCCCCC---EEEEEEcCCCCEEEEE----
Q 003177 684 FKCQS--GATQMRFQPRLGRILAAAI-EN----YISILDVETQVCR--LKLQGHKNQ---VHSVCWNTSGEYLASV---- 747 (842)
Q Consensus 684 ~~~~~--~i~~v~~sp~g~~l~~~s~-dg----~I~IwDl~t~~~~--~~l~~h~~~---V~sl~~spdg~~Lasg---- 747 (842)
..... .+..+.|+|+++.|+..+. ++ .|++||+.+++.. ..+.++... ...++|+|||+.|+..
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 311 (388)
T 3pe7_A 232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD 311 (388)
T ss_dssp CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence 33332 3678899999998766554 22 3999999988643 333321000 1123799999987753
Q ss_pred -----e-CCeEEEEEcCCCCCceeEEEeecCCC-----------ceEEEEEeCCCCEEEEEEc-CC--eEEEEECCC
Q 003177 748 -----S-DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVIGC-YE--TLELWNMTE 804 (842)
Q Consensus 748 -----s-Dg~I~IwDl~s~~~~~~i~~~~~~~~-----------~I~sv~~spdg~~L~sgs~-dg--~I~Iwdl~~ 804 (842)
. +..|++||+.++ . +..+..+.. .+..++|+|||+.|++++. ++ .|+++++..
T Consensus 312 ~~~~~~~~~~i~~~d~~~~---~-~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 312 SGYKIENDPFLYVFNMKNG---T-QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp -----CCCCEEEEEETTTT---E-EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred cccccCCCCEEEEEeccCC---c-eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 3 568999999886 2 233444444 4778899999998888775 44 455555543
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=7.5e-15 Score=155.97 Aligned_cols=234 Identities=12% Similarity=0.113 Sum_probs=172.8
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEee------cCccceEEEEEcCCCCcEEEEEeC-CCcEEE
Q 003177 600 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDLLCSCDN-NSEIRY 672 (842)
Q Consensus 600 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~------~h~~~V~sl~fspdg~~llasgs~-Dg~I~v 672 (842)
++-..+.++++++++.++++...++.|.+||... . .+..+. ++...+.++++.+.+..++++... ++.|++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~-~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-R-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-C-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-c-EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4556799999999999888888899999999873 3 244442 234578999995333446655533 789999
Q ss_pred EECCCCceeeEEee--cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe
Q 003177 673 WSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS 748 (842)
Q Consensus 673 wDl~t~~~i~~~~~--~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~--~h~~~V~sl~~spdg~~Lasgs 748 (842)
|| .+++.+..+.. ...+..+++++++..+++...++.|.+||.. ++.+..+. .+...+.+++++++|+++++..
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 99 56777666643 2458899999998866666678899999965 45555553 3456789999999999877776
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEEccCC--CCeeEEEE
Q 003177 749 -DELVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHD--KLVSSLAA 822 (842)
Q Consensus 749 -Dg~I~IwDl~s~~~~~~i~~~~~~--~~~I~sv~~spdg~~L~sgs~dg-~I~Iwdl~~~~~~~~~~h~--~~V~sla~ 822 (842)
++.|++||... ..+..+... ...+..++++++|..+++...++ .|.+||........+..+. ..+.++++
T Consensus 183 ~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 183 RAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp GGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEE
T ss_pred CCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEE
Confidence 88999999743 345555433 35789999999998777666675 9999997544444444433 34789999
Q ss_pred eCCCCEEEEEeCCCcEEEcC
Q 003177 823 STVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 823 spdg~~Lasgs~DG~V~IWd 842 (842)
+|+|+++++ +.|++|+||+
T Consensus 259 ~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 259 MDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp ETTTEEEEE-ETTTEEEEEE
T ss_pred CCCCcEEEE-CCCCeEEEEE
Confidence 999987777 6799999995
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=6.5e-16 Score=184.40 Aligned_cols=240 Identities=10% Similarity=0.069 Sum_probs=165.9
Q ss_pred EEEEc--CCCCE-EEEEEC-CCcEEEEecC--C-CeEEEEecc-----CCCCeEEEEEcCCCCEEEEEeCC---------
Q 003177 565 SCHFS--PDGKL-LATGGH-DKKAVLWCTE--S-FTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD--------- 623 (842)
Q Consensus 565 sv~fS--pdg~~-Lasgs~-Dg~I~vwd~~--t-~~~~~~l~~-----h~~~I~~l~fspdg~~Latgs~D--------- 623 (842)
...|+ |||++ |+.++. +..|++|++. . + ....+.. |...+.+++|+|||+.|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA-VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC-CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC-CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 55565 99998 776654 5667777765 2 3 3445555 67789999999999999999877
Q ss_pred -CeEEEEEcCCCC----ceeeEee-cCccceEEEEEcCCCCcEEEEEeCC-------CcEEEEECC-CC---ceeeEEee
Q 003177 624 -RTVRVWDTENPD----YSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSIN-NG---SCAGVFKC 686 (842)
Q Consensus 624 -g~I~IWDl~t~~----~~i~~~~-~h~~~V~sl~fspdg~~llasgs~D-------g~I~vwDl~-t~---~~i~~~~~ 686 (842)
..|++||+.+.. .....+. .+...+..++|+|||+.+++++... ..|++||+. ++ +.......
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 589999998721 1244555 5667888999999998776555432 479999999 56 44444443
Q ss_pred -cCCeeEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEEEeCCCCC--------EEEEEEcCCCCEEEEEeCCeEEEE
Q 003177 687 -QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQGHKNQ--------VHSVCWNTSGEYLASVSDELVRVW 755 (842)
Q Consensus 687 -~~~i~~v~~sp~g~~l~~~s~dg--~I~IwDl~t~~~~~~l~~h~~~--------V~sl~~spdg~~LasgsDg~I~Iw 755 (842)
...+..+.|+|+++.++++..++ .|++||+.+++.......+... +.+++|++++.+++++.++.++||
T Consensus 240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (662)
T 3azo_A 240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLG 319 (662)
T ss_dssp TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEE
T ss_pred CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEE
Confidence 46789999999999666666677 6777787777655443333222 567899999999888776777788
Q ss_pred --EcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE--EEcCC--eEEEEECCCCeEEEE
Q 003177 756 --SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV--IGCYE--TLELWNMTENKTLTL 810 (842)
Q Consensus 756 --Dl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~s--gs~dg--~I~Iwdl~~~~~~~~ 810 (842)
|+.++ .+..+..+...+..+. ++++..++. ++.+. .|++||+.+++...+
T Consensus 320 ~~d~~~~----~~~~l~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 320 ILDPESG----ELVDAAGPWTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp EEETTTT----EEEECCSSCCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred EEECCCC----cEEEecCCCCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 55444 3566666767777661 444444333 33333 677778888876654
No 178
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.71 E-value=1e-13 Score=146.84 Aligned_cols=274 Identities=8% Similarity=-0.036 Sum_probs=195.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003177 556 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 634 (842)
Q Consensus 556 l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~ 634 (842)
+..+...+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|..||.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 45566789999999999987776667899999988 55443 223355779999999999988887778899999986 3
Q ss_pred CceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe--ecCCeeEEEEeCCCCEEEEEEcCCeEE
Q 003177 635 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYIS 712 (842)
Q Consensus 635 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~~v~~sp~g~~l~~~s~dg~I~ 712 (842)
......+......+.++++.+++. ++++...++.|.+||. +++...... ....+..+++.+++..+++...++.|.
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 321222222456789999999875 6656666789999998 555443221 134588999999987666665678999
Q ss_pred EEECCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003177 713 ILDVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 790 (842)
Q Consensus 713 IwDl~t~~~~~~-l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~s 790 (842)
+||. +++.... +..+...+.+++++++|.++++.. ++.|.+||. ++. ............+..++++++|..+++
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE--ITEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc--EEEEECCCCCCCceeEEECCCCCEEEe
Confidence 9999 6654432 333456788999999999777665 789999998 552 111223334567899999999984444
Q ss_pred EEcCCeEEEEECCCCeEEEE--ccCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 003177 791 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVK 839 (842)
Q Consensus 791 gs~dg~I~Iwdl~~~~~~~~--~~h~~~V~sla~spdg~~Lasgs~DG~V~ 839 (842)
...++.|.+||. ++....+ ..+...+.++++ +++.++++.+.++.++
T Consensus 242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGK 290 (299)
T ss_dssp ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence 446789999998 4554433 345578999999 8888777765444443
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=5.5e-15 Score=161.37 Aligned_cols=234 Identities=10% Similarity=0.068 Sum_probs=173.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC------------------------CeEEEEEcCCCCceeeEee-cCccceEEEEEcCC
Q 003177 602 TQWITDVRFSPSLSRLATSSAD------------------------RTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPS 656 (842)
Q Consensus 602 ~~~I~~l~fspdg~~Latgs~D------------------------g~I~IWDl~t~~~~i~~~~-~h~~~V~sl~fspd 656 (842)
-+.|.+|+++++|+++++.+.+ ++|.+||..++.. +..+. ++-..+..++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-LQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-EEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-EeccCCCccCCceEEEECCC
Confidence 3569999999999999888777 4799999987664 33332 44467899999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCc-eeeEEee----------cCCeeEEEEeC-CCCEEEEEE-cCCeEEEEECCCCeEEE
Q 003177 657 KEDLLCSCDNNSEIRYWSINNGS-CAGVFKC----------QSGATQMRFQP-RLGRILAAA-IENYISILDVETQVCRL 723 (842)
Q Consensus 657 g~~llasgs~Dg~I~vwDl~t~~-~i~~~~~----------~~~i~~v~~sp-~g~~l~~~s-~dg~I~IwDl~t~~~~~ 723 (842)
+. ++++...++.|++||..... .+..+.. ......++++| ++..+++.+ .++.|++|| .++..+.
T Consensus 102 g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 102 GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 87 77777788999999986442 4444421 12478999999 666666654 589999999 5566666
Q ss_pred EEeCC----------CCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEee--cCCCceEEEEEeCCCCEEE
Q 003177 724 KLQGH----------KNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLL 789 (842)
Q Consensus 724 ~l~~h----------~~~V~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~--~~~~~I~sv~~spdg~~L~ 789 (842)
.+... -.....++++|+ +.++++.. ++.|++||..++ +.+..+. .+...+..++++| +..++
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-CEEEE
Confidence 66422 234889999999 55555555 889999999866 5555553 3456788999999 32222
Q ss_pred EE-------EcCCeEEEEECCCCeEEEE----ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 790 VI-------GCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 790 sg-------s~dg~I~Iwdl~~~~~~~~----~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
+. ..+..|++||+.+++.+.. ..+...+.+|+++|+|.++++...+++|++|+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 22 2234899999999998854 35677899999999998888888899999985
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.69 E-value=5.5e-14 Score=152.58 Aligned_cols=236 Identities=12% Similarity=0.128 Sum_probs=172.4
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEE
Q 003177 553 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRV 628 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g~I~I 628 (842)
+..+..+...+.+++|+++|++++++..++.|++||..+++....+..+...+.+++|+++++++++...+ +.|.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence 45566777788999999999988888889999999998887765554567789999999999988877666 68999
Q ss_pred EEcCCCCceeeEee--cCccceEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCceeeEEeecCCeeEEEEeCCCC
Q 003177 629 WDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 700 (842)
Q Consensus 629 WDl~t~~~~i~~~~--~h~~~V~sl~fspdg~~llasgs~------Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~ 700 (842)
||.+++... ..+. .+...+.+++++|++. ++++... .+.|..||..+++..........+..++|+|+++
T Consensus 117 ~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 117 ATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp ECTTSCSCE-EEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred EeCCCCEEE-EEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence 998876532 1222 2446789999999986 4444442 3567777776655554444445678999999998
Q ss_pred EEEEEE-cCCeEEEEECCC-CeEEE--------EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe
Q 003177 701 RILAAA-IENYISILDVET-QVCRL--------KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 769 (842)
Q Consensus 701 ~l~~~s-~dg~I~IwDl~t-~~~~~--------~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~ 769 (842)
.++++. .++.|.+||+.+ +..+. .+.++ ..+..++++++|+++++.. ++.|.+||.. + ..+..+
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~~ 269 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQI 269 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEEE
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEEE
Confidence 776665 478999999963 22111 11222 4678899999999888776 7899999984 3 344454
Q ss_pred ecCCC------ceEEEEEeCCCCEEEEEEcCC
Q 003177 770 SCTGN------KFHSCVFHPTFPSLLVIGCYE 795 (842)
Q Consensus 770 ~~~~~------~I~sv~~spdg~~L~sgs~dg 795 (842)
..... .+.+++|++++..|++++.++
T Consensus 270 ~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 270 LIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp ECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 43332 688999999988888777764
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.68 E-value=5e-15 Score=178.99 Aligned_cols=245 Identities=8% Similarity=-0.021 Sum_probs=176.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCC-----cEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe-------
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT------- 625 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg-----~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~------- 625 (842)
+|...+.+++|||||++||.+..++ .|++||+.+++.+.....+ ..+.+++|+||++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3444688999999999998876544 8999999999877543222 23678999999999999988766
Q ss_pred ---------EEEEEcCCCCce-eeEee--cCccceEEEEEcCCCCcEEEEEeC----CCcEEEEECCC------Cc-eee
Q 003177 626 ---------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN------GS-CAG 682 (842)
Q Consensus 626 ---------I~IWDl~t~~~~-i~~~~--~h~~~V~sl~fspdg~~llasgs~----Dg~I~vwDl~t------~~-~i~ 682 (842)
|++|++.++... ...+. .|...+..+.|+|+|+.++++... +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999876532 22222 245668899999999987766642 56899999986 43 234
Q ss_pred EEeecCCeeEEEEeCCCCEEEEEEcC----CeEEEEECCCCe--EEEEEeCCCC--CEEEEEEcCCCCEEEEEe-CC--e
Q 003177 683 VFKCQSGATQMRFQPRLGRILAAAIE----NYISILDVETQV--CRLKLQGHKN--QVHSVCWNTSGEYLASVS-DE--L 751 (842)
Q Consensus 683 ~~~~~~~i~~v~~sp~g~~l~~~s~d----g~I~IwDl~t~~--~~~~l~~h~~--~V~sl~~spdg~~Lasgs-Dg--~ 751 (842)
.+..........|+++++.|+..+.. +.|.+||+.++. ....+..|.. .+..++|++++.++++.. ++ .
T Consensus 281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT 360 (710)
T ss_dssp EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence 44332222233588999988887764 369999998764 1233444543 688899997777777777 77 5
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCe
Q 003177 752 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENK 806 (842)
Q Consensus 752 I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d----g~I~Iwdl~~~~ 806 (842)
|++||+.++ ..+..+..+...+..+.++|++..|++...+ +.|++||+.+++
T Consensus 361 l~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 361 LQLHDLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCCC---CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 677787666 4556666667778889999999877655433 589999998877
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.67 E-value=1.9e-14 Score=153.94 Aligned_cols=243 Identities=9% Similarity=0.060 Sum_probs=178.9
Q ss_pred EEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003177 554 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 632 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~-~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 632 (842)
..+..+.....+++|+|+|+ +++++..++.|.+||..++ ...+..+...+.+++|+++++++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 44456667789999999998 7888888999999999887 55666677889999999999988877777899999997
Q ss_pred CCCceeeEeecC----ccceEEEEEcCCCCcEEEE----Ee-------------CCCcEEEEECCCCceeeEEeecCCee
Q 003177 633 NPDYSLRTFTGH----STTVMSLDFHPSKEDLLCS----CD-------------NNSEIRYWSINNGSCAGVFKCQSGAT 691 (842)
Q Consensus 633 t~~~~i~~~~~h----~~~V~sl~fspdg~~llas----gs-------------~Dg~I~vwDl~t~~~i~~~~~~~~i~ 691 (842)
++... ...... ...+.+++++|+|. ++++ +. ..+.|..++.. ++............
T Consensus 99 ~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~ 175 (296)
T 3e5z_A 99 GGEWE-SIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPN 175 (296)
T ss_dssp TCCEE-EEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEE
T ss_pred CCcEE-EEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCc
Confidence 66532 211111 23467899999987 5555 22 13466666665 55444444445678
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECC-CCeE---EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEE
Q 003177 692 QMRFQPRLGRILAAAIENYISILDVE-TQVC---RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIH 767 (842)
Q Consensus 692 ~v~~sp~g~~l~~~s~dg~I~IwDl~-t~~~---~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~ 767 (842)
.++|+|+++.+++.+.++.|.+||+. ++.. ...+..+...+.+++++++|+++++. ++.|.+||.. + ..+.
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g---~~~~ 250 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G---DELG 250 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S---CEEE
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C---CEEE
Confidence 99999999998555567899999987 4544 33333355667789999999977777 8899999986 3 4666
Q ss_pred EeecCCCceEEEEE-eCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 768 ELSCTGNKFHSCVF-HPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 768 ~~~~~~~~I~sv~~-spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
.+..+.. +.+++| .+++..|++++.+ .|..++..+.++.
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 6666666 889999 5888888888875 5667777766543
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.67 E-value=2.9e-14 Score=155.79 Aligned_cols=251 Identities=10% Similarity=0.019 Sum_probs=188.4
Q ss_pred CCCcEEEEecCCCeEEEEec------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEE
Q 003177 580 HDKKAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 653 (842)
Q Consensus 580 ~Dg~I~vwd~~t~~~~~~l~------~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~f 653 (842)
.++.|.+||.++++....+. .......++.+. +++.+++...++.|.+||..+.+. +..+. .......+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-VGRIT-GFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-EEEEE-CCSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-EEEcC-CCCCCcEEEE
Confidence 37899999999998775542 122446778874 345556666689999999998764 45554 3467889999
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecC------CeeEEEEeCCCCEEEEEE--cCCeEEEEECCCCeEEEEE
Q 003177 654 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKL 725 (842)
Q Consensus 654 spdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~------~i~~v~~sp~g~~l~~~s--~dg~I~IwDl~t~~~~~~l 725 (842)
++++ .++++...++.|.+||..+++....+.... ....+++ +++.++++. .++.|.+||+.+++.+..+
T Consensus 92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 8887 566566578999999999999888887655 5667777 456777766 3789999999999888877
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEe-C----------CeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEc
Q 003177 726 QGHKNQVHSVCWNTSGEYLASVS-D----------ELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGC 793 (842)
Q Consensus 726 ~~h~~~V~sl~~spdg~~Lasgs-D----------g~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~~spdg~~L~sgs~ 793 (842)
... .....++++++|++++++. + +.|.+||..++ +....+... ......++++|++++|+++..
T Consensus 169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 643 3457889999999777766 4 68999999887 455444432 346899999999999888765
Q ss_pred CCeEEEEECCCCeEEE--Ec-cCCCCeeEEEEeC-CCCEEEEE----eCCCcEEEcC
Q 003177 794 YETLELWNMTENKTLT--LS-AHDKLVSSLAAST-VNGMVASA----SHDKCVKIWK 842 (842)
Q Consensus 794 dg~I~Iwdl~~~~~~~--~~-~h~~~V~sla~sp-dg~~Lasg----s~DG~V~IWd 842 (842)
.|.+||..+++... +. .+......++++| ++.++++. ..++.|.+||
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 89999999887642 11 2246789999999 55566665 5688999986
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.66 E-value=1.6e-14 Score=157.52 Aligned_cols=234 Identities=17% Similarity=0.162 Sum_probs=163.0
Q ss_pred CCeEEEEEcCCCCEEEEEECC---C--cEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC------------
Q 003177 561 SKVESCHFSPDGKLLATGGHD---K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------------ 623 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~D---g--~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D------------ 623 (842)
..+.+++|||||++||.++.+ + .|++||+.+++.......+ . +.+++|+||++.|++++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 458899999999999987754 2 4888899888766555433 4 9999999999999888743
Q ss_pred ---------------CeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCC-------cEEEEECCCCcee
Q 003177 624 ---------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-------EIRYWSINNGSCA 681 (842)
Q Consensus 624 ---------------g~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg-------~I~vwDl~t~~~i 681 (842)
..|++||+.++.. +..+.. . .+..++|+|++ +++++..+. ...+|.+.+++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEE 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceE
Confidence 5799999987553 234443 3 78899999998 665665432 3344443355544
Q ss_pred eEEeecCCeeEEEEeCCCCEEEEEEcC--------CeEEEEECCCCeEEEEEeCCCCCEEE-EEEcCCCCEEEEEe-CCe
Q 003177 682 GVFKCQSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHS-VCWNTSGEYLASVS-DEL 751 (842)
Q Consensus 682 ~~~~~~~~i~~v~~sp~g~~l~~~s~d--------g~I~IwDl~t~~~~~~l~~h~~~V~s-l~~spdg~~Lasgs-Dg~ 751 (842)
..... ..+. .++|+|+.|++++.+ ..|.+|| +++.......+...+.. +.|+ ++ ++++++ ++.
T Consensus 212 ~l~~~-~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~ 284 (347)
T 2gop_A 212 KMFEK-VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS 284 (347)
T ss_dssp EEEEE-ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE
T ss_pred EeccC-ccee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc
Confidence 44433 3343 349999998887754 3688888 56555444556777886 9999 88 777777 889
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE-EEEECCCCeEEEEccCCCC
Q 003177 752 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL-ELWNMTENKTLTLSAHDKL 816 (842)
Q Consensus 752 I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I-~Iwdl~~~~~~~~~~h~~~ 816 (842)
++|| +.++ .. ..+..+...|.+++|++ ..+++++.++.. .||.+. ++...+..|...
T Consensus 285 ~~l~-~~~g---~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~lt~~n~~ 342 (347)
T 2gop_A 285 VNLY-IWDG---EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEKQLTDYNDP 342 (347)
T ss_dssp EEEE-EESS---SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEEECCCTTST
T ss_pred EEEE-EcCC---ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEEEeccccHh
Confidence 9999 8743 33 33334477899999999 667777777654 666665 666666666543
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=2.7e-13 Score=159.25 Aligned_cols=265 Identities=11% Similarity=0.064 Sum_probs=194.9
Q ss_pred CCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC--CCCceeeEeecCccc
Q 003177 570 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NPDYSLRTFTGHSTT 647 (842)
Q Consensus 570 pdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~--t~~~~i~~~~~h~~~ 647 (842)
+.+.++++...++.|.+||..+++.+.++... ..+.++.|+||++++++++.|+.|.+||+. +.. .+..+... ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-~v~~i~~G-~~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-TVAEIKIG-SE 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-EEEEEECC-SE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-EeEEEecC-CC
Confidence 34456677778899999999999999888644 357799999999999999999999999995 544 34444433 34
Q ss_pred eEEEEEc----CCCCcEEEEEeCCCcEEEEECCCCceeeEEeec------------CCeeEEEEeCCCCEEEEEEc-CCe
Q 003177 648 VMSLDFH----PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAAI-ENY 710 (842)
Q Consensus 648 V~sl~fs----pdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~------------~~i~~v~~sp~g~~l~~~s~-dg~ 710 (842)
...++|+ |+|++++++...++.|.++|..+.+.+..+... ..+..+..++++..+++... +|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 6799999 699989888888999999999999988877642 14678888888777665554 589
Q ss_pred EEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec-----CCCceEEEEE
Q 003177 711 ISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVF 781 (842)
Q Consensus 711 I~IwDl~t~~~--~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~-----~~~~I~sv~~ 781 (842)
|.++|..+.+. +..+ .......++.|+|++++++++. ++.|.++|+.++ +.+..+.. |.+.-.. .+
T Consensus 322 v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~-~~ 396 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGAN-FV 396 (567)
T ss_dssp EEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEE-EE
T ss_pred EEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCcccee-eE
Confidence 99999987532 2233 2445678899999999988877 789999999987 44444433 2211212 26
Q ss_pred eCCCCEEEEEE--cCCeEEEEECCC-------CeEE-EEccCCCCeeEEEEeCCCCEEEEEeC-------CCcEEEcC
Q 003177 782 HPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIWK 842 (842)
Q Consensus 782 spdg~~L~sgs--~dg~I~Iwdl~~-------~~~~-~~~~h~~~V~sla~spdg~~Lasgs~-------DG~V~IWd 842 (842)
+|++..+++.+ .++.|.++|..+ .+.+ ++......-..|.++|++++|.+... ...|.|+|
T Consensus 397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 88866666555 457999999987 4555 44433333355778999998888663 34777765
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.65 E-value=6.3e-14 Score=149.85 Aligned_cols=239 Identities=9% Similarity=0.071 Sum_probs=173.0
Q ss_pred eEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEE
Q 003177 593 TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 671 (842)
Q Consensus 593 ~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 671 (842)
..+..+..+.....+++|+|+++ +++++..++.|.+||..++ ...+..+...+.++++++++. ++++...++.|.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~ 93 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLE 93 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCc-EEEEecCCCeEE
Confidence 33445556667789999999998 7788888999999999875 455666778899999999987 565666678999
Q ss_pred EEECCCCceeeEEee-----cCCeeEEEEeCCCCEEEEE----E-------------cCCeEEEEECCCCeEEEEEeCCC
Q 003177 672 YWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAA----A-------------IENYISILDVETQVCRLKLQGHK 729 (842)
Q Consensus 672 vwDl~t~~~i~~~~~-----~~~i~~v~~sp~g~~l~~~----s-------------~dg~I~IwDl~t~~~~~~l~~h~ 729 (842)
+||..+++....... ...+..++++|+|..+++. + ..+.|..||.. ++. ..+..+.
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~ 171 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDR 171 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCC
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCC
Confidence 999988876544332 2346789999999877763 2 13567777766 443 3344566
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcC-CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 003177 730 NQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT 807 (842)
Q Consensus 730 ~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~-s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~ 807 (842)
.....++|+|++++|++.+ ++.|++|++. ++........+..+...+..++++++|..+ +++ ++.|.+||......
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~-v~~-~~~v~~~~~~g~~~ 249 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIW-ASA-GDGVHVLTPDGDEL 249 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEE-EEE-TTEEEEECTTSCEE
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEE-EEc-CCeEEEECCCCCEE
Confidence 7789999999999985555 7899999997 332101122223345566789999999844 444 78999999874433
Q ss_pred EEEccCCCCeeEEEE-eCCCCEEEEEeCCCcEEE
Q 003177 808 LTLSAHDKLVSSLAA-STVNGMVASASHDKCVKI 840 (842)
Q Consensus 808 ~~~~~h~~~V~sla~-spdg~~Lasgs~DG~V~I 840 (842)
..+..+.. +++++| .++++.|++++.++.+++
T Consensus 250 ~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 250 GRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 45666666 999999 589998998888875554
No 187
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.64 E-value=7.7e-15 Score=162.24 Aligned_cols=237 Identities=10% Similarity=0.060 Sum_probs=164.0
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEE-------------------EEEcCCCCEEEEE---
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-------------------VRFSPSLSRLATS--- 620 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~-------------------l~fspdg~~Latg--- 620 (842)
+.++.|+|||++|+.++.++.|++||+.+++....+..+...... +.|+|+++.++.+
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 162 (396)
T 3c5m_A 83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY 162 (396)
T ss_dssp TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence 334889999999999999999999999988776665545443333 3567788777654
Q ss_pred --eCCCeEEEEEcCCCCceeeEeecCccceEEEEEcC-CCCcEEEEEeCC-----CcEEEEECCCCceeeEEeec--CCe
Q 003177 621 --SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQ--SGA 690 (842)
Q Consensus 621 --s~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fsp-dg~~llasgs~D-----g~I~vwDl~t~~~i~~~~~~--~~i 690 (842)
..+..|++||+.++.. ..+..+...+..+.|+| ++..++++.... ..|.+||+..++........ ..+
T Consensus 163 ~~~~~~~l~~~d~~~g~~--~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (396)
T 3c5m_A 163 HTNPTCRLIKVDIETGEL--EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESC 240 (396)
T ss_dssp HTCCCEEEEEEETTTCCE--EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEE
T ss_pred cCCCcceEEEEECCCCcE--EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccc
Confidence 3567899999987653 33345677899999999 666555544322 46999998766543333321 236
Q ss_pred eEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEEeCCCCCEEEEEEcC-CCCEEEEEe----------------
Q 003177 691 TQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS---------------- 748 (842)
Q Consensus 691 ~~v~~sp~g~~l~~~s~d-----g~I~IwDl~t~~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs---------------- 748 (842)
..+.|+|+++.|++++.+ +.|++||+.+++...... .. ... +.|+| ||++|++++
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~ 317 (396)
T 3c5m_A 241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIE 317 (396)
T ss_dssp EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCC
T ss_pred cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccC
Confidence 778999999988777654 449999999886544332 12 233 89999 999888743
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecCCC-----------ceEEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEE
Q 003177 749 -DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVIGCY-E--TLELWNMTENKTL 808 (842)
Q Consensus 749 -Dg~I~IwDl~s~~~~~~i~~~~~~~~-----------~I~sv~~spdg~~L~sgs~d-g--~I~Iwdl~~~~~~ 808 (842)
+..|++||+.++.. . .+..+.. .+..++|+|+|+.|++++.+ + .|+++++.++...
T Consensus 318 ~~~~i~~~d~~~~~~-~---~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 318 NDPFLYVLNTKAKSA-Q---KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp CCCEEEEEETTTTBC-C---EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred CCCcEEEEecccCce-E---EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 36899999987632 2 2222332 25667899999998888764 3 5666677666554
No 188
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.64 E-value=1.1e-12 Score=138.92 Aligned_cols=275 Identities=8% Similarity=-0.033 Sum_probs=193.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003177 556 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 634 (842)
Q Consensus 556 l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~ 634 (842)
+......+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|.+||.. +
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34556679999999999988877778999999988 55443 233344679999999999888877778899999987 4
Q ss_pred CceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEE-e-ecCCeeEEEEeCCCCEEEEEEcCCeEE
Q 003177 635 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-K-CQSGATQMRFQPRLGRILAAAIENYIS 712 (842)
Q Consensus 635 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~-~-~~~~i~~v~~sp~g~~l~~~s~dg~I~ 712 (842)
.............+.++++.+++. ++++...++.|..||.. ++..... . ....+..+++.++++.+++...++.|.
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 432222222346789999999876 55566667899999987 5544221 1 234688999999988555555578999
Q ss_pred EEECCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003177 713 ILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 790 (842)
Q Consensus 713 IwDl~t~~~~~-~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~s 790 (842)
+||. +++... ....+...+.+++++++|.++++.. .+.|.+||. ++. ............+..+++++++..+++
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE--ISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc--EEEEECCCCCCCceEEEECCCCCEEEe
Confidence 9998 444333 2233456789999999998777766 678999998 332 122223334567889999999984444
Q ss_pred EEcCCeEEEEECCCCeEEEE--ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 791 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 791 gs~dg~I~Iwdl~~~~~~~~--~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
...++.|.+||. +++...+ ......+.+++++++|.++++.. . .|..+
T Consensus 247 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 247 EWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp ETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred ccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 445689999998 4554433 33456789999999998766654 4 55444
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.63 E-value=7.1e-15 Score=177.23 Aligned_cols=246 Identities=10% Similarity=0.010 Sum_probs=171.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEE-----ECCCcEEEEecCCCeEEEEeccCCCCe--EEEEEcCCCCEEEEEeCCCe-----
Q 003177 558 ASTSKVESCHFSPDGKLLATG-----GHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT----- 625 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasg-----s~Dg~I~vwd~~t~~~~~~l~~h~~~I--~~l~fspdg~~Latgs~Dg~----- 625 (842)
+|...+.+++|||||++||.+ +.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 456668999999999999843 345689999999987641 1122222 68999999999999998876
Q ss_pred --------EEEEEcCCCCc---eeeEeecCccceEEEEEcCCCCcEEEEEeCC-C--cEEEEECCCCceeeEEeecCCee
Q 003177 626 --------VRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGAT 691 (842)
Q Consensus 626 --------I~IWDl~t~~~---~i~~~~~h~~~V~sl~fspdg~~llasgs~D-g--~I~vwDl~t~~~i~~~~~~~~i~ 691 (842)
|++|++.++.. .+.....|...+.++.|+|+|+.++++...+ + .|++||..+++..........+.
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 99999987653 2223334556789999999999877666543 2 67777776666555555555566
Q ss_pred EEEEeCCCCEEEEEEc----CCeEEEEECCCCeE---EEEEeCC-CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC-CCC
Q 003177 692 QMRFQPRLGRILAAAI----ENYISILDVETQVC---RLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGS 761 (842)
Q Consensus 692 ~v~~sp~g~~l~~~s~----dg~I~IwDl~t~~~---~~~l~~h-~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~-s~~ 761 (842)
...+ ++++ +++.+. ++.|.+||+.++.. ...+..+ ...+..++|+ ++.++++.. |+..+||.+. .+
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 351 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG- 351 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC-
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 6666 5666 555554 57899999987642 3333333 4567888988 666777766 8877777654 23
Q ss_pred CceeEEEeecC-CCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeEEEEc
Q 003177 762 KGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS 811 (842)
Q Consensus 762 ~~~~i~~~~~~-~~~I~sv~~spdg~~L~sgs~d----g~I~Iwdl~~~~~~~~~ 811 (842)
..+..+..+ ...+..+.+++++..|++...+ +.|++||+.+++...+.
T Consensus 352 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 352 --KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp --CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred --CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 344555544 5567778899999877755433 58999999988765443
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.63 E-value=1.1e-13 Score=151.35 Aligned_cols=253 Identities=8% Similarity=-0.020 Sum_probs=182.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEe
Q 003177 562 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 641 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~ 641 (842)
...++++. +++++++...++.|.+||..+++.+.++. ....+..++++++++.+++...++.|.+||..+... ...+
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i 121 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI-TGYI 121 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE-EEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE-EEEE
Confidence 35677774 34555666667999999999999988885 446789999988885444444899999999987653 3333
Q ss_pred ecCc-----cceEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcC-------
Q 003177 642 TGHS-----TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE------- 708 (842)
Q Consensus 642 ~~h~-----~~V~sl~fspdg~~llasgs-~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~d------- 708 (842)
.... .....+++ +++.++++.. .++.|.+||+.+++.+..+........++++++++.++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYG 199 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccc
Confidence 3222 14556777 3555665654 4889999999999998888877778889999998766665544
Q ss_pred ---CeEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003177 709 ---NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 784 (842)
Q Consensus 709 ---g~I~IwDl~t~~~~~~l~~h-~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spd 784 (842)
+.|.+||..+++....+... ......++|+|++++|+++.. .|.+||..++.... ...+.........++++|+
T Consensus 200 ~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~ 277 (328)
T 3dsm_A 200 YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPN 277 (328)
T ss_dssp BCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTT
T ss_pred cCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceee-eeeecCCCCceEEEEEcCC
Confidence 78999999999887766532 346899999999998887655 89999998764211 1111212467889999996
Q ss_pred CCEEEEEE-----cCCeEEEEECCCCeEEEEccCCCCeeEEEE
Q 003177 785 FPSLLVIG-----CYETLELWNMTENKTLTLSAHDKLVSSLAA 822 (842)
Q Consensus 785 g~~L~sgs-----~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~ 822 (842)
+..|+++. .++.|.+||.. ++.+....-......++|
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred CCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 66666665 56799999998 776643333444566665
No 191
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.61 E-value=1.2e-13 Score=153.58 Aligned_cols=271 Identities=10% Similarity=0.069 Sum_probs=193.4
Q ss_pred EEEcCCCCEEEEEEC-----CCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEE
Q 003177 566 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD 630 (842)
Q Consensus 566 v~fSpdg~~Lasgs~-----Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWD 630 (842)
....|+++.+++... ++.|.++|..+++.+.++.....+ . ++++||++++++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445789998888865 679999999999999998766665 4 99999999988876 367899999
Q ss_pred cCCCCceeeEee-cC------ccceEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEE
Q 003177 631 TENPDYSLRTFT-GH------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 702 (842)
Q Consensus 631 l~t~~~~i~~~~-~h------~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l 702 (842)
..+.+. +..+. +. ......+.|+|+|++++++... ++.|.++|+.+++.+..+...+. ...+......+
T Consensus 116 ~~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTF 192 (386)
T ss_dssp TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEE
T ss_pred CCCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCcee
Confidence 998664 44432 21 1245679999999987766643 78999999999999998876432 22333345677
Q ss_pred EEEEcCCeEEEEECCC-CeEEEEEeCC----CCCEE-EEEEc-CCCCEEEEEeCCeEEEEEcCCCCCceeEEEee---c-
Q 003177 703 LAAAIENYISILDVET-QVCRLKLQGH----KNQVH-SVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELS---C- 771 (842)
Q Consensus 703 ~~~s~dg~I~IwDl~t-~~~~~~l~~h----~~~V~-sl~~s-pdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~---~- 771 (842)
++.+.||.+.++++.+ ++.......+ ...+. ...|. ++|++++++.++.|+++|+.+... ..+..+. .
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~ 271 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEA 271 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeecceeccccc
Confidence 8889999999999986 5543322111 12221 24564 688777766689999999976532 2222221 0
Q ss_pred ------CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEe-
Q 003177 772 ------TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS- 833 (842)
Q Consensus 772 ------~~~~I~sv~~spdg~~L~sgs~----------dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~-~Lasgs- 833 (842)
.......+++++++..+++... .+.|.++|+.+++.+....-...++.|++++|++ +|+++.
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence 0123345778999999998764 2479999999999985544445789999999997 666654
Q ss_pred CCCcEEEcC
Q 003177 834 HDKCVKIWK 842 (842)
Q Consensus 834 ~DG~V~IWd 842 (842)
.++.|.|+|
T Consensus 352 ~~~~VsViD 360 (386)
T 3sjl_D 352 GDKTLYIHD 360 (386)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEE
Confidence 588999876
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.60 E-value=1.4e-13 Score=144.35 Aligned_cols=238 Identities=8% Similarity=-0.042 Sum_probs=168.3
Q ss_pred CeEEEEEcCCCCEEE-EEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeE
Q 003177 562 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 562 ~V~sv~fSpdg~~La-sgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~ 640 (842)
...+++++++|++++ +.+.++.|.+||..+.........+...+.++++.++++++++.. ++.|.+||...... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--ee
Confidence 578899999999777 446788999999766543322233445688999999998666655 88999999876432 22
Q ss_pred ee-cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 641 FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 718 (842)
Q Consensus 641 ~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t 718 (842)
+. .....+.++++++++. ++++...++.|.+|+..+........ ....+..+++++++..+++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 22 2335789999999876 66666678899999876554332221 123578899999988665555678999999987
Q ss_pred CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003177 719 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 797 (842)
Q Consensus 719 ~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I 797 (842)
.........+...+.+++++++|.++++.. ++.|.+||..... .......+...+..++++++|..+++...++.|
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 765544333446789999999997777666 7899999986642 222222233568999999999866777778899
Q ss_pred EEEECCCCe
Q 003177 798 ELWNMTENK 806 (842)
Q Consensus 798 ~Iwdl~~~~ 806 (842)
++|++...+
T Consensus 258 ~~~~~~~~~ 266 (270)
T 1rwi_B 258 VKLTSLEHH 266 (270)
T ss_dssp EEECCCGGG
T ss_pred EEEcCCCcc
Confidence 999987654
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.60 E-value=2.3e-12 Score=143.69 Aligned_cols=267 Identities=9% Similarity=0.005 Sum_probs=185.5
Q ss_pred EEcCCCCEEEEEEC--CC---cEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEEc
Q 003177 567 HFSPDGKLLATGGH--DK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDT 631 (842)
Q Consensus 567 ~fSpdg~~Lasgs~--Dg---~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWDl 631 (842)
...|+++++++... .. .|.+||..+++.+.++.....+ .++|+||+++|+++. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 34467777766653 22 8899999999998888755444 999999999999886 3678999999
Q ss_pred CCCCceeeEeecC-------ccceEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCceeeE-EeecCCeeEEEEeCCC-CE
Q 003177 632 ENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GR 701 (842)
Q Consensus 632 ~t~~~~i~~~~~h-------~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~-~~~~~~i~~v~~sp~g-~~ 701 (842)
.+.+. +..+.-. ......+.|+|+|++++++... ++.|.++| .+++.+.. +..... +.+.|++ ..
T Consensus 105 ~t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~ 179 (373)
T 2mad_H 105 VTFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPST 179 (373)
T ss_pred CCCcE-EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCce
Confidence 87553 3333211 1234589999999987766644 68899999 99998877 655332 4455654 44
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEe-----CCCCCE-EEEEEcCCCCEEEE-EeCCeEEEEEcCCCCCceeEEEeecC--
Q 003177 702 ILAAAIENYISILDVETQVCRLKLQ-----GHKNQV-HSVCWNTSGEYLAS-VSDELVRVWSIGSGSKGECIHELSCT-- 772 (842)
Q Consensus 702 l~~~s~dg~I~IwDl~t~~~~~~l~-----~h~~~V-~sl~~spdg~~Las-gsDg~I~IwDl~s~~~~~~i~~~~~~-- 772 (842)
+++.+.||.+.++|. +++.+.... ....++ ....+.+++..++. ..++.|.+.|+..... ..+..+...
T Consensus 180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~ 257 (373)
T 2mad_H 180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSG 257 (373)
T ss_pred EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCC
Confidence 566778999999999 776653321 111221 23456666554444 3478999999976421 222222211
Q ss_pred --------CCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEe
Q 003177 773 --------GNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS 833 (842)
Q Consensus 773 --------~~~I~sv~~spdg~~L~sgs~----------dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~-~Lasgs 833 (842)
......++++++++.++++.. .+.|.++|..+++.+..........+++|+|||+ +++++.
T Consensus 258 ~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEc
Confidence 122445789999998888764 3579999999999885445555789999999999 777777
Q ss_pred -CCCcEEEcC
Q 003177 834 -HDKCVKIWK 842 (842)
Q Consensus 834 -~DG~V~IWd 842 (842)
.++.|.|||
T Consensus 338 ~~~~~V~ViD 347 (373)
T 2mad_H 338 AGTEVLHIYD 347 (373)
T ss_pred CCCCeEEEEE
Confidence 589999986
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=2.6e-13 Score=163.93 Aligned_cols=268 Identities=8% Similarity=-0.015 Sum_probs=182.2
Q ss_pred CCCCEEEEEECCC-----cEEEEecCCCeEEEEe------ccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEEcCC
Q 003177 570 PDGKLLATGGHDK-----KAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTEN 633 (842)
Q Consensus 570 pdg~~Lasgs~Dg-----~I~vwd~~t~~~~~~l------~~h~~~I~~l~fspdg~~Latgs~Dg-----~I~IWDl~t 633 (842)
|+|++++....++ .|++.+...++....+ .+|...+..++|+|||++|+.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 7898877665432 3455554444433222 13445688999999999999876643 899999998
Q ss_pred CCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCc----------------EEEEECCCCcee--eEEee---cCCeeE
Q 003177 634 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE----------------IRYWSINNGSCA--GVFKC---QSGATQ 692 (842)
Q Consensus 634 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~----------------I~vwDl~t~~~i--~~~~~---~~~i~~ 692 (842)
+......+. ...+.+++|+|||+.++++.. ++. |++|++.++... ..+.. ...+..
T Consensus 161 g~~~~~~~~--~~~~~~~~wspDg~~l~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 161 AKELPDVLE--RVKFSCMAWTHDGKGMFYNAY-PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TEEEEEEEE--EECSCCEEECTTSSEEEEEEC-CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCccccc--CcccceEEEEeCCCEEEEEEE-CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 764222222 223678999999987775554 443 999999887632 22232 233678
Q ss_pred EEEeCCCCEEEEEEc-----CCeEEEEECCC------Ce-EEEEEeCCCCCEEEEEEcCCCCEEEEEe--C---CeEEEE
Q 003177 693 MRFQPRLGRILAAAI-----ENYISILDVET------QV-CRLKLQGHKNQVHSVCWNTSGEYLASVS--D---ELVRVW 755 (842)
Q Consensus 693 v~~sp~g~~l~~~s~-----dg~I~IwDl~t------~~-~~~~l~~h~~~V~sl~~spdg~~Lasgs--D---g~I~Iw 755 (842)
+.|+|++++|+.++. +..|++||+.+ +. ....+..+...+.. .|+++|..|+..+ + ..|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 999999999988876 56899999986 42 34556666666655 4888998777665 2 269999
Q ss_pred EcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEE
Q 003177 756 SIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA 830 (842)
Q Consensus 756 Dl~s~~~~~~i~~~~~~~~--~I~sv~~spdg~~L~sgs~dg--~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~La 830 (842)
|+.++... ....+..+.. .+..++|++++..+++...++ .|++|++.+++.+ .+..+.+.|..++++|++..|+
T Consensus 317 d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 317 DFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp ETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred eCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 99876321 2233333333 678899997777777777787 5777888677654 6666778889999999987655
Q ss_pred EE-e---CCCcEEEcC
Q 003177 831 SA-S---HDKCVKIWK 842 (842)
Q Consensus 831 sg-s---~DG~V~IWd 842 (842)
.. + ..+.|++||
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 33 3 246777774
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=1.7e-13 Score=143.57 Aligned_cols=232 Identities=8% Similarity=-0.070 Sum_probs=165.1
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceee
Q 003177 604 WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 682 (842)
Q Consensus 604 ~I~~l~fspdg~~La-tgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~ 682 (842)
...++++++++++++ +.+.++.|.+||..+... ......+...+.++++++++. ++++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~- 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQT- 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCE-
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEe-
Confidence 688999999998777 446788999999765432 111123335688999999877 555555 889999998765433
Q ss_pred EEee--cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 003177 683 VFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 759 (842)
Q Consensus 683 ~~~~--~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s 759 (842)
.+.. ...+..+++++++..+++...++.|.+||..+.............+.+++++++|+++++.. ++.|.+||...
T Consensus 101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 2221 24688999999988666666678999998766544332223334678999999999777766 78999999876
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc-cCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 003177 760 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCV 838 (842)
Q Consensus 760 ~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~-~h~~~V~sla~spdg~~Lasgs~DG~V 838 (842)
. ............+..++++++|..+++...++.|.+||..+....... .+...+.+++++++|+++++...+++|
T Consensus 181 ~---~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 181 N---NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp C---CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred C---ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 5 222222233367889999999965555555779999999776554433 334678999999999988888899999
Q ss_pred EEcC
Q 003177 839 KIWK 842 (842)
Q Consensus 839 ~IWd 842 (842)
++|+
T Consensus 258 ~~~~ 261 (270)
T 1rwi_B 258 VKLT 261 (270)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9985
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.57 E-value=2.4e-12 Score=137.81 Aligned_cols=239 Identities=10% Similarity=0.094 Sum_probs=170.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEE-------EECCCcEEEEecCCCeEEEEec----cCCCCeEEEEEcCC-CCEEEEEeCCC
Q 003177 557 PASTSKVESCHFSPDGKLLAT-------GGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADR 624 (842)
Q Consensus 557 ~gH~~~V~sv~fSpdg~~Las-------gs~Dg~I~vwd~~t~~~~~~l~----~h~~~I~~l~fspd-g~~Latgs~Dg 624 (842)
...-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++. .++
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCC
Confidence 344455789999999988887 5778999999988877653322 25567999999999 6655544 455
Q ss_pred eEEEEEcCCCCceeeEe-ec-----CccceEEEEEcCCCCcEEEEEeCC---------------CcEEEEECCCCceeeE
Q 003177 625 TVRVWDTENPDYSLRTF-TG-----HSTTVMSLDFHPSKEDLLCSCDNN---------------SEIRYWSINNGSCAGV 683 (842)
Q Consensus 625 ~I~IWDl~t~~~~i~~~-~~-----h~~~V~sl~fspdg~~llasgs~D---------------g~I~vwDl~t~~~i~~ 683 (842)
.|.+||.+ +.. ..+ .. ....+.++++++++. ++++...+ +.|..||.. ++....
T Consensus 93 ~l~~~d~~-g~~--~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 93 GLLVVQTD-GTF--EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp EEEEEETT-SCE--EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred CEEEEeCC-CCE--EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 79999988 442 222 11 124588999999986 44455444 568888876 665544
Q ss_pred EeecCCeeEEEEe----CCCCEEEEEE-cCCeEEEEECC-CCe-----EEEEEeCCC-CCEEEEEEcCCCCEEEEEe-CC
Q 003177 684 FKCQSGATQMRFQ----PRLGRILAAA-IENYISILDVE-TQV-----CRLKLQGHK-NQVHSVCWNTSGEYLASVS-DE 750 (842)
Q Consensus 684 ~~~~~~i~~v~~s----p~g~~l~~~s-~dg~I~IwDl~-t~~-----~~~~l~~h~-~~V~sl~~spdg~~Lasgs-Dg 750 (842)
.........++++ ++++.++++. .++.|.+||+. ++. ....+..+. ..+..++++++|.++++.. ++
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 4444567889999 9987776665 56899999986 443 223333343 5688999999999888876 88
Q ss_pred eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCC
Q 003177 751 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTE 804 (842)
Q Consensus 751 ~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~-dg~I~Iwdl~~ 804 (842)
.|.+||..++ ..+..+..+...+.++++++++..|++++. ++.|..|++..
T Consensus 248 ~i~~~d~~~g---~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 248 HIEVFGPDGG---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEECTTCB---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEcCCCC---cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9999998765 333444555578999999999997776654 56899999864
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=1.1e-12 Score=140.06 Aligned_cols=241 Identities=10% Similarity=0.056 Sum_probs=179.1
Q ss_pred CCCEEEEEECCCcEEEEecCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecC-ccce
Q 003177 571 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTV 648 (842)
Q Consensus 571 dg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h-~~~V 648 (842)
.+++|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+|++|+ +.++.|..||. +++ .+..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-ELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-EEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-EEEEEcCCCCccc
Confidence 46789999999999999999999999998776 5789999999999888 45788999999 555 45666654 3578
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecC-------CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 003177 649 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------GATQMRFQPRLGRILAAAIENYISILDVETQVC 721 (842)
Q Consensus 649 ~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-------~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~ 721 (842)
.++.+.++|..+++.++.++.|..+|. +++.+..+.... ....+++.++++++++...++.|.+||.+ ++.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 899999998865543333778888886 688777776422 24456788999999988889999999998 999
Q ss_pred EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC------CceEEEEEeCCCCEEEEEEcC
Q 003177 722 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG------NKFHSCVFHPTFPSLLVIGCY 794 (842)
Q Consensus 722 ~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~------~~I~sv~~spdg~~L~sgs~d 794 (842)
+.++... ..+.++.+.++|.+++++. ++.|..+|..++ +.+..+.... ..+..+...++|..+++....
T Consensus 158 ~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 158 LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence 9888754 4566788889999999888 668999999888 5666654322 237888889999866665311
Q ss_pred --------CeEEEEEC-CCCeEE-EEccC--CCCeeEEE
Q 003177 795 --------ETLELWNM-TENKTL-TLSAH--DKLVSSLA 821 (842)
Q Consensus 795 --------g~I~Iwdl-~~~~~~-~~~~h--~~~V~sla 821 (842)
+..+++++ .+++++ .+..+ -+.|.+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 234 HDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp TCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred ccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 23456665 466665 33322 24455543
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=2.8e-11 Score=127.96 Aligned_cols=239 Identities=10% Similarity=0.030 Sum_probs=167.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeE-EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 636 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~ 636 (842)
.+...+.+++++++|.++++...++.|..||.. ++. ...+......+.++++.+++.++++...++.|.+||. ++..
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI 131 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence 345679999999999988877768899999976 333 2223334567999999999988888777889999998 4443
Q ss_pred eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeE-Ee-ecCCeeEEEEeCCCCEEEEEEcCCeEEEE
Q 003177 637 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISIL 714 (842)
Q Consensus 637 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~-~~-~~~~i~~v~~sp~g~~l~~~s~dg~I~Iw 714 (842)
.......+...+.++++.+++. ++++...++.|.+||. +++.... .. ....+..+++.+++..+++...++.|.+|
T Consensus 132 ~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 132 REYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 2222333456789999999875 5656666789999999 6665442 11 13457889999998866555567899999
Q ss_pred ECCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003177 715 DVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 792 (842)
Q Consensus 715 Dl~t~~~~~-~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs 792 (842)
|. ++.... .+..+...+.+++++++|.++++.. ++.|.+||. ++. .....+..+...+.++++ +++. |++++
T Consensus 210 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~--~~~~~~~~~~~~~~~i~~-~~g~-l~v~~ 283 (299)
T 2z2n_A 210 TT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI--IEEYPIQIKSAEPHGICF-DGET-IWFAM 283 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE--EEEEECSSSSCCEEEEEE-CSSC-EEEEE
T ss_pred CC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc--eEEEeCCCCCCccceEEe-cCCC-EEEEe
Confidence 99 665433 2333556789999999999777664 789999998 331 111123344567889999 7776 55555
Q ss_pred cCCeEEEEECCCCe
Q 003177 793 CYETLELWNMTENK 806 (842)
Q Consensus 793 ~dg~I~Iwdl~~~~ 806 (842)
..+.|..++..+++
T Consensus 284 ~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 284 ECDKIGKLTLIKDN 297 (299)
T ss_dssp TTTEEEEEEEC---
T ss_pred cCCcEEEEEcCccc
Confidence 56788888876654
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.55 E-value=2.3e-13 Score=163.99 Aligned_cols=268 Identities=11% Similarity=-0.016 Sum_probs=172.8
Q ss_pred cCCCCEEEEEECCC-----cEEEEecCCCeEEEEec------cCCCCeEEEEEcCCCCEEEEE-----eCCCeEEEEEcC
Q 003177 569 SPDGKLLATGGHDK-----KAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATS-----SADRTVRVWDTE 632 (842)
Q Consensus 569 Spdg~~Lasgs~Dg-----~I~vwd~~t~~~~~~l~------~h~~~I~~l~fspdg~~Latg-----s~Dg~I~IWDl~ 632 (842)
+|+|++++....++ .|++.+...++....+. +|...+.+++|+|||++||.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 37899888776554 24444544554333332 455679999999999999844 345689999999
Q ss_pred CCCce-eeEeecCccceEEEEEcCCCCcEEEEEeCCCc-------------EEEEECCCCce--eeEEee---cCCeeEE
Q 003177 633 NPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-------------IRYWSINNGSC--AGVFKC---QSGATQM 693 (842)
Q Consensus 633 t~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~-------------I~vwDl~t~~~--i~~~~~---~~~i~~v 693 (842)
++... ...+.. .....++|+|||+.++++ +.|.. |++|++.++.. ...+.. ...+..+
T Consensus 156 tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~-~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 156 SGEWSKVDVIEG--GKYATPKWTPDSKGFYYE-WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp TCCBCSSCCBSC--CTTCCCEECTTSSEEEEE-ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCCcCCcccCc--ccccceEEecCCCEEEEE-EecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 87642 111111 112689999999866654 44544 99999998763 223322 2357899
Q ss_pred EEeCCCCEEEEEEcCC----eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCcee
Q 003177 694 RFQPRLGRILAAAIEN----YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGEC 765 (842)
Q Consensus 694 ~~sp~g~~l~~~s~dg----~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~ 765 (842)
.|+|+|++|++++.++ .|+++|..++... .+..+...+....| ++|.+++.+. ++.|.+||+.++.....
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 310 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW 310 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence 9999999998887766 7777877655433 33345555666667 5565444443 36899999987632112
Q ss_pred EEEeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEEEccC-CCCeeEEEEeCCCCEEEEEe----CCCc
Q 003177 766 IHELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSAH-DKLVSSLAASTVNGMVASAS----HDKC 837 (842)
Q Consensus 766 i~~~~~~-~~~I~sv~~spdg~~L~sgs~dg~I~Iw--dl~~~~~~~~~~h-~~~V~sla~spdg~~Lasgs----~DG~ 837 (842)
...+..+ ...+..++|+ ++..+++...++..+|| ++..+....+..+ .+.|..++++|+++.|+... ..+.
T Consensus 311 ~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 311 KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 2223323 4567888888 66677777888866666 4443333344444 66788889999997666332 3467
Q ss_pred EEEcC
Q 003177 838 VKIWK 842 (842)
Q Consensus 838 V~IWd 842 (842)
|++||
T Consensus 390 v~~~d 394 (695)
T 2bkl_A 390 IYKTS 394 (695)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88775
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.54 E-value=3.5e-13 Score=163.69 Aligned_cols=245 Identities=12% Similarity=0.039 Sum_probs=166.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECC-----CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe--------
Q 003177 559 STSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 625 (842)
Q Consensus 559 H~~~V~sv~fSpdg~~Lasgs~D-----g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~-------- 625 (842)
|...+.+++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 34468899999999999887654 36999999999876432 12222357899999 99998887654
Q ss_pred ------EEEEEcCCCCce-eeEee--cCccceEEEEEcCCCCcEEEEEeC----CCcEEEEECCCC--ceeeEEe-ecCC
Q 003177 626 ------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNG--SCAGVFK-CQSG 689 (842)
Q Consensus 626 ------I~IWDl~t~~~~-i~~~~--~h~~~V~sl~fspdg~~llasgs~----Dg~I~vwDl~t~--~~i~~~~-~~~~ 689 (842)
|++|++.++... ...+. .+...+..+.|+|+|+.+++++.. ...|++||+.++ ++...+. ....
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 899999765421 22222 233458899999999977766643 348999999877 4133333 3333
Q ss_pred eeEEEEeCCCCEEEEEEcC----CeEEEEECCCC--eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC-CCC
Q 003177 690 ATQMRFQPRLGRILAAAIE----NYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGS 761 (842)
Q Consensus 690 i~~v~~sp~g~~l~~~s~d----g~I~IwDl~t~--~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~-s~~ 761 (842)
+... ++|+++.|+..+.+ +.|.+||+.++ .....+..+...+..++|+ ++.++++.. |+..+||.+. ++
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 395 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG- 395 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS-
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 4444 45889998888764 45999999874 4444445455566778887 555666666 8876666554 23
Q ss_pred CceeEEEeec-CCCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCeEEEE
Q 003177 762 KGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTLTL 810 (842)
Q Consensus 762 ~~~~i~~~~~-~~~~I~sv~~spdg~~L~sgs~----dg~I~Iwdl~~~~~~~~ 810 (842)
..+..+.. ....+..+.++|++..|+.... .++|++||+.+++...+
T Consensus 396 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 396 --KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp --CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred --CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 34455543 3567888999999886664433 25899999998875544
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.54 E-value=4.4e-11 Score=133.28 Aligned_cols=244 Identities=11% Similarity=0.057 Sum_probs=173.1
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEecCCCeEEEEeccC-------CCCeEEEEEcCCCCE
Q 003177 554 QLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSR 616 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~Lasgs----------~Dg~I~vwd~~t~~~~~~l~~h-------~~~I~~l~fspdg~~ 616 (842)
..++....+ .++|+|||++|+++. .++.|.+||..+++.+..+... ......+.|+|||++
T Consensus 61 ~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~ 138 (373)
T 2mad_H 61 GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD 138 (373)
T ss_pred EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCE
Confidence 344433333 899999999999886 3678999999998888776432 133568999999999
Q ss_pred EEEEeC--CCeEEEEEcCCCCceeeE-eecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-----e-c
Q 003177 617 LATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----C-Q 687 (842)
Q Consensus 617 Latgs~--Dg~I~IWDl~t~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-----~-~ 687 (842)
|++++. ++.|.++| .+++. +.. +. .. .|+.+.|++...+++.+.||.+.+||. +++...... . .
T Consensus 139 l~v~n~~~~~~v~viD-~t~~~-~~~~i~-~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~ 211 (373)
T 2mad_H 139 LLFFQFAAGPAVGLVV-QGGSS-DDQLLS-SP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAA 211 (373)
T ss_pred EEEEecCCCCeEEEEE-CCCCE-EeEEcC-CC---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCC
Confidence 999874 57899999 87653 444 32 11 235566777777778888999999999 887764332 1 1
Q ss_pred CC-eeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEEEEeC----------CCCCEEEEEEcCCCCEEEEEe------
Q 003177 688 SG-ATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG----------HKNQVHSVCWNTSGEYLASVS------ 748 (842)
Q Consensus 688 ~~-i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~--~~~~l~~----------h~~~V~sl~~spdg~~Lasgs------ 748 (842)
.. .....+.++++.++..+.++.+.++|+.... .+..+.. .......+.+++++..+++..
T Consensus 212 ~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~ 291 (373)
T 2mad_H 212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred cceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcc
Confidence 11 1234567777776666678999999997652 2222221 112344578899998877754
Q ss_pred -----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCeEEEE
Q 003177 749 -----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL 810 (842)
Q Consensus 749 -----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~-~L~sgs-~dg~I~Iwdl~~~~~~~~ 810 (842)
++.|.++|+.+. +.+..+.. ......++|+|||+ .++++. .++.|.+||+.+++.+..
T Consensus 292 ~~~~~~~~V~VID~~t~---~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 292 KLHAAAKEVTSVTGLVG---QTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cccCCCCeEEEEECCCC---EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 247999999887 66666643 44689999999999 677766 478999999999998854
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.51 E-value=5.3e-12 Score=135.12 Aligned_cols=236 Identities=8% Similarity=-0.023 Sum_probs=163.5
Q ss_pred CCCCeEEEEEcCCCCEEEE-------EeCCCeEEEEEcCCCCceeeEeec-----CccceEEEEEcCCCCcEEEEEeCCC
Q 003177 601 HTQWITDVRFSPSLSRLAT-------SSADRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNNS 668 (842)
Q Consensus 601 h~~~I~~l~fspdg~~Lat-------gs~Dg~I~IWDl~t~~~~i~~~~~-----h~~~V~sl~fspdg~~llasgs~Dg 668 (842)
.-....+++|++++.++++ +..++.|.+||..++.. ..+.. +...+.++++++++..++++.. ++
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~ 92 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK--TVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL 92 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE--EEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE--EEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence 3456789999999988877 57789999999877653 22222 4567899999998333554443 45
Q ss_pred cEEEEECCCCceeeE-Eee-----cCCeeEEEEeCCCCEEEEEEcC---------------CeEEEEECCCCeEEEEEeC
Q 003177 669 EIRYWSINNGSCAGV-FKC-----QSGATQMRFQPRLGRILAAAIE---------------NYISILDVETQVCRLKLQG 727 (842)
Q Consensus 669 ~I~vwDl~t~~~i~~-~~~-----~~~i~~v~~sp~g~~l~~~s~d---------------g~I~IwDl~t~~~~~~l~~ 727 (842)
.|.+||.. ++.... ... ...+.++++++++..+++...+ +.|..||.. ++..... .
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~ 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-T 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-E
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-c
Confidence 79999998 765433 221 1347899999998877666554 578888876 5443332 2
Q ss_pred CCCCEEEEEEc----CCCCEEEEEe--CCeEEEEEcC-CCCC--ceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeE
Q 003177 728 HKNQVHSVCWN----TSGEYLASVS--DELVRVWSIG-SGSK--GECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETL 797 (842)
Q Consensus 728 h~~~V~sl~~s----pdg~~Lasgs--Dg~I~IwDl~-s~~~--~~~i~~~~~~~-~~I~sv~~spdg~~L~sgs~dg~I 797 (842)
+......++|+ ++++.|+++. ++.|.+||+. ++.. ...+..+..+. ..+..++++++|..+++...++.|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 33456889999 9997666554 7899999986 3311 01222333333 567889999999877776678899
Q ss_pred EEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEE-EEeCCCcEEEcC
Q 003177 798 ELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA-SASHDKCVKIWK 842 (842)
Q Consensus 798 ~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~La-sgs~DG~V~IWd 842 (842)
.+||..+++.+ .+..+...+.+++|+++++.|+ +...++.|..|+
T Consensus 250 ~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 99999866544 4455667899999999999554 444567777764
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.49 E-value=2.3e-12 Score=145.48 Aligned_cols=266 Identities=8% Similarity=0.044 Sum_probs=187.8
Q ss_pred CCCCEEEEEECC-----CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEEcCCC
Q 003177 570 PDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENP 634 (842)
Q Consensus 570 pdg~~Lasgs~D-----g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWDl~t~ 634 (842)
++++.+++.... +.|.++|..+++.+.++.....+ .++++||+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466766665542 69999999999999999766665 899999999998886 3678999999987
Q ss_pred CceeeEee-c------CccceEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCceeeEEeecCCeeEEEEeCCC-CEEEEE
Q 003177 635 DYSLRTFT-G------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAA 705 (842)
Q Consensus 635 ~~~i~~~~-~------h~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g-~~l~~~ 705 (842)
+. +..+. + .......+.|+|+|++++++... ++.|.++|+.+.+.+..+..... ....|++ ..+++.
T Consensus 160 ~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN 235 (426)
T ss_dssp CE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred cE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence 64 44332 2 11234578999999987766543 68999999999999988876432 3334433 566777
Q ss_pred EcCCeEEEEECCCCeEEEEE----eCCCCCE-EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------
Q 003177 706 AIENYISILDVETQVCRLKL----QGHKNQV-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT------- 772 (842)
Q Consensus 706 s~dg~I~IwDl~t~~~~~~l----~~h~~~V-~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~------- 772 (842)
+.||.+.+.++.+++..... .....++ ..+.|.+++..++..+ .+.|.+.|+..... ..+..+...
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERAD 314 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGG
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeecccccccc
Confidence 78898888888666544321 1111121 2356789988777767 88999999876421 111111100
Q ss_pred ---CCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEe-CCCc
Q 003177 773 ---GNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKC 837 (842)
Q Consensus 773 ---~~~I~sv~~spdg~~L~sgs~----------dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~-~Lasgs-~DG~ 837 (842)
......+++++++..+++... .+.|.++|..+.+.+....-......|+|+||++ +++++. .++.
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~ 394 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQT 394 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCe
Confidence 111223689999998888753 3479999999999884444444689999999999 888888 5899
Q ss_pred EEEcC
Q 003177 838 VKIWK 842 (842)
Q Consensus 838 V~IWd 842 (842)
|.|+|
T Consensus 395 VsVID 399 (426)
T 3c75_H 395 LHIYD 399 (426)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99886
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.48 E-value=2.7e-12 Score=155.82 Aligned_cols=268 Identities=12% Similarity=0.022 Sum_probs=171.2
Q ss_pred cCCCCEEEEEECCCc---EEEE--ecC---CCeEEEEe------ccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEE
Q 003177 569 SPDGKLLATGGHDKK---AVLW--CTE---SFTVKSTL------EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVW 629 (842)
Q Consensus 569 Spdg~~Lasgs~Dg~---I~vw--d~~---t~~~~~~l------~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IW 629 (842)
+|+|++++....++. ..+| +.. .++....+ .+|...+..++|+|||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 388998887665433 4445 443 33332221 2344468899999999999887654 469999
Q ss_pred EcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCC-------------cEEEEECCCCce--eeEEeecC---Cee
Q 003177 630 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-------------EIRYWSINNGSC--AGVFKCQS---GAT 691 (842)
Q Consensus 630 Dl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg-------------~I~vwDl~t~~~--i~~~~~~~---~i~ 691 (842)
|+.+++. +.. ..+...+..++|+|| +.++++...+. .|++|++.++.. ...+.... .+.
T Consensus 195 dl~tg~~-~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~ 271 (741)
T 1yr2_A 195 GVADGKP-LAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH 271 (741)
T ss_dssp ETTTCCE-EEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred ECCCCCC-CCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence 9998764 222 222223467899999 77776554322 399999987763 22333222 478
Q ss_pred EEEEeCCCCEEEEEEcCC-----eEEEEECCCC--eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C----CeEEEEEcCC
Q 003177 692 QMRFQPRLGRILAAAIEN-----YISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D----ELVRVWSIGS 759 (842)
Q Consensus 692 ~v~~sp~g~~l~~~s~dg-----~I~IwDl~t~--~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D----g~I~IwDl~s 759 (842)
.+.|+|+|++|+..+.++ .|++||+.++ .+...+..+...+.... +|+|..|+..+ + +.|.+||+.+
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 999999999998887654 8999999877 31445555555555554 48888887766 2 3599999877
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEEEcc-CCCCeeEEEEeCCCCEEE-EEe--
Q 003177 760 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSA-HDKLVSSLAASTVNGMVA-SAS-- 833 (842)
Q Consensus 760 ~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iw--dl~~~~~~~~~~-h~~~V~sla~spdg~~La-sgs-- 833 (842)
+. ......+..+...+..+.++ ++..+++...++..+|| ++..+....+.. +.+.|..++++|+++.|+ +.+
T Consensus 351 ~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 428 (741)
T 1yr2_A 351 ST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSF 428 (741)
T ss_dssp SS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEET
T ss_pred Cc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 42 12333334444556677777 55566777778865555 554443434443 467788999999987554 322
Q ss_pred -CCCcEEEcC
Q 003177 834 -HDKCVKIWK 842 (842)
Q Consensus 834 -~DG~V~IWd 842 (842)
..++|++||
T Consensus 429 ~~P~~i~~~d 438 (741)
T 1yr2_A 429 TQPATVLALD 438 (741)
T ss_dssp TEEEEEEEEE
T ss_pred CCCCEEEEEE
Confidence 346777775
No 205
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.47 E-value=2.2e-11 Score=129.83 Aligned_cols=215 Identities=12% Similarity=0.038 Sum_probs=166.1
Q ss_pred CCceEEeccCCCceEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003177 510 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWC 588 (842)
Q Consensus 510 ~~~~l~~Gs~d~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~-~~V~sv~fSpdg~~Lasgs~Dg~I~vwd 588 (842)
.++++++++.++.|.+|+..+. . .+..+..|. ..+.++.++|+|++|+ +.++.|..||
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG----------------~---~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d 62 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK----------------E---IVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMIT 62 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT----------------E---EEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCC----------------e---EEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEEC
Confidence 3578889999999999854332 1 233344444 4688999999999988 4578899999
Q ss_pred cCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeeEee------cCccceEEEEEcCCCCcE
Q 003177 589 TESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDL 660 (842)
Q Consensus 589 ~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~t~~~~i~~~~------~h~~~V~sl~fspdg~~l 660 (842)
. +++.+..+..+. ..+.++.+.++|++|++.+. ++.|..+|.+ ++ .+..+. .+......+++.++|+ +
T Consensus 63 ~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk-~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~ 138 (276)
T 3no2_A 63 R-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GE-VLSKTEFETGIERPHAQFRQINKNKKGN-Y 138 (276)
T ss_dssp T-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SC-EEEEEEECCSCSSGGGSCSCCEECTTSC-E
T ss_pred C-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CC-EEEEEeccCCCCcccccccCceECCCCC-E
Confidence 8 899998887653 57889999999999999887 7778777763 33 343332 1222445567888877 5
Q ss_pred EEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC------CCEEE
Q 003177 661 LCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHS 734 (842)
Q Consensus 661 lasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~------~~V~s 734 (842)
+++...++.|.+||.. ++.+..+........+.+.++++.++++..++.|..||..+++.+..+..+. ..+..
T Consensus 139 lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~ 217 (276)
T 3no2_A 139 LVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQ 217 (276)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEE
T ss_pred EEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccccc
Confidence 6688889999999998 9999999877778888899999999888888899999999999999886432 23788
Q ss_pred EEEcCCCCEEEEEeCC
Q 003177 735 VCWNTSGEYLASVSDE 750 (842)
Q Consensus 735 l~~spdg~~LasgsDg 750 (842)
+...++|.++++...|
T Consensus 218 ~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 218 LFPLQNGGLYICNWQG 233 (276)
T ss_dssp EEECTTSCEEEEEECT
T ss_pred ceEcCCCCEEEEeccC
Confidence 8899999998887533
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.47 E-value=6.1e-12 Score=139.72 Aligned_cols=252 Identities=12% Similarity=0.129 Sum_probs=175.1
Q ss_pred EEEEcCCCCEEEEEE----------CCCcEEEEecCCCeEEEEeccCC-------CCeEEEEEcCCCCEEEEEeC--CCe
Q 003177 565 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLSRLATSSA--DRT 625 (842)
Q Consensus 565 sv~fSpdg~~Lasgs----------~Dg~I~vwd~~t~~~~~~l~~h~-------~~I~~l~fspdg~~Latgs~--Dg~ 625 (842)
.++++|||++|+++. .++.|.+||..+++.+.++.... .....++|+|||++++++.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 399999999887775 36789999999999988875321 24567999999999998874 689
Q ss_pred EEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CceeeEEee-----cCCe-eEEEEeCC
Q 003177 626 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGA-TQMRFQPR 698 (842)
Q Consensus 626 I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~-----~~~i-~~v~~sp~ 698 (842)
|.++|+.+.+. +..+.-.. |..+.|.+...+++.+.||.+.++++.+ ++....... ...+ ....|.+.
T Consensus 162 VsVID~~t~~v-v~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~ 236 (386)
T 3sjl_D 162 VGVVDLEGKAF-KRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK 236 (386)
T ss_dssp EEEEETTTTEE-EEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT
T ss_pred EEEEECCCCcE-EEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcC
Confidence 99999998654 44443211 1223455555666777799999999976 554321111 0112 12466543
Q ss_pred CCEEEEEEcCCeEEEEECCCCe--EEEEEe---------C-CCCCEEEEEEcCCCCEEEEEe--C---------CeEEEE
Q 003177 699 LGRILAAAIENYISILDVETQV--CRLKLQ---------G-HKNQVHSVCWNTSGEYLASVS--D---------ELVRVW 755 (842)
Q Consensus 699 g~~l~~~s~dg~I~IwDl~t~~--~~~~l~---------~-h~~~V~sl~~spdg~~Lasgs--D---------g~I~Iw 755 (842)
.+.++..+.+|.|+++|+.+.. ....+. + ....+..+++++++..++... + +.|.++
T Consensus 237 dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~vi 316 (386)
T 3sjl_D 237 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL 316 (386)
T ss_dssp TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred CCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEE
Confidence 4455557778999999997653 332222 0 112334577789998887764 1 479999
Q ss_pred EcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEc-CCeEEEEECCCCeEEEEccCCCCeeEEEEeCC
Q 003177 756 SIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGC-YETLELWNMTENKTLTLSAHDKLVSSLAASTV 825 (842)
Q Consensus 756 Dl~s~~~~~~i~~~~~~~~~I~sv~~spdg~-~L~sgs~-dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spd 825 (842)
|+.+. +.+..+.. ...+..|++++|++ .|+++.. ++.|.++|..+++.+......+..+.|.+++|
T Consensus 317 D~~t~---kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 317 DAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp ETTTC---CEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred ECCCC---eEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 99998 56666553 34788999999996 6777654 78999999999999866666666677777776
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.45 E-value=2.6e-10 Score=120.58 Aligned_cols=235 Identities=9% Similarity=-0.009 Sum_probs=165.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEE-EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003177 558 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 636 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~-~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~ 636 (842)
.+...+.+++++++|.++++...++.|.+||.. ++.. ..+......+.++++.+++.++++...++.|..||.. +..
T Consensus 59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI 136 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence 445679999999999887777667899999987 5543 2233344679999999999888887778899999987 443
Q ss_pred eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee---cCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 003177 637 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISI 713 (842)
Q Consensus 637 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~~v~~sp~g~~l~~~s~dg~I~I 713 (842)
....+......+.++++.+++. ++++...++.|.+||. +++... +.. ...+..+++.+++..+++....+.|.+
T Consensus 137 ~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 213 (300)
T 2qc5_A 137 YEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR 213 (300)
T ss_dssp EEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred EEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence 2222333456789999999877 6656666788999998 555443 322 235789999998876655555678999
Q ss_pred EECCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003177 714 LDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 791 (842)
Q Consensus 714 wDl~t~~~~~-~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sg 791 (842)
||. ++.... .+..+...+.+++++++|.++++.. ++.|.+||.. +. .....+......+.+++++++|. |+++
T Consensus 214 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~~~~~~~~i~~~~~g~-l~v~ 288 (300)
T 2qc5_A 214 ITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NT--IQEYQLQTENAEPHGITFGKDGS-VWFA 288 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC--EEEEECCSTTCCCCCEEECTTSC-EEEE
T ss_pred EcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc--EEEEECCccCCccceeEeCCCCC-EEEE
Confidence 998 444332 3334556789999999999776665 7899999983 31 12222333346688899999987 5555
Q ss_pred EcCCeEEEEECC
Q 003177 792 GCYETLELWNMT 803 (842)
Q Consensus 792 s~dg~I~Iwdl~ 803 (842)
+.. .|..+|.+
T Consensus 289 ~~~-~i~~~~p~ 299 (300)
T 2qc5_A 289 LKC-KIGKLNLN 299 (300)
T ss_dssp CSS-EEEEEEEC
T ss_pred ccC-ceEEeCCC
Confidence 544 77777753
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.44 E-value=1.5e-10 Score=124.06 Aligned_cols=230 Identities=13% Similarity=0.115 Sum_probs=159.7
Q ss_pred ecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003177 556 IPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 634 (842)
Q Consensus 556 l~gH~~~V~sv~fSpdg-~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~ 634 (842)
+..+..-..+..|++++ .++++...++.|+.||..+++.. .+ .....+.+++++++++++++ . ++.|.+||.+++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 34444556789999954 45666667899999999887653 33 24567999999999995554 3 567999999875
Q ss_pred CceeeEeec-----CccceEEEEEcCCCCcEEEEEeC--------CCcEEEEECCC-CceeeEEeecCCeeEEEEeCCCC
Q 003177 635 DYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDN--------NSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLG 700 (842)
Q Consensus 635 ~~~i~~~~~-----h~~~V~sl~fspdg~~llasgs~--------Dg~I~vwDl~t-~~~i~~~~~~~~i~~v~~sp~g~ 700 (842)
.. ..+.. ....+.+++++|+|..++.+... .....+|.+.. ++.............++|+|+++
T Consensus 84 ~~--~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 84 SA--VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHK 161 (297)
T ss_dssp EE--EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSC
T ss_pred cE--EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCC
Confidence 43 22221 12458899999998844433221 12234444432 44444444445578899999999
Q ss_pred EEEEEEc-CCeEEEEEC--CCCeE-----EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003177 701 RILAAAI-ENYISILDV--ETQVC-----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 771 (842)
Q Consensus 701 ~l~~~s~-dg~I~IwDl--~t~~~-----~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 771 (842)
.++++.. ++.|.+||+ .++.. ...+..+...+..++++++|+++++.. .+.|.+||..++ +.+..+..
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---~~~~~i~~ 238 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---KRLQTVKL 238 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---CEEEEEEC
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---eEEEEEEC
Confidence 8776655 689999987 45532 223333446788999999998887776 778999999877 66777776
Q ss_pred CCCceEEEEEe-CCCCEEEEEEcC
Q 003177 772 TGNKFHSCVFH-PTFPSLLVIGCY 794 (842)
Q Consensus 772 ~~~~I~sv~~s-pdg~~L~sgs~d 794 (842)
....+++|+|. |+++.|++++..
T Consensus 239 p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 239 PVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp SSSBEEEEEEESGGGCEEEEEEBC
T ss_pred CCCCceEEEEeCCCCCEEEEEcCC
Confidence 67789999998 898888877754
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.44 E-value=1.6e-10 Score=123.98 Aligned_cols=228 Identities=10% Similarity=0.036 Sum_probs=156.0
Q ss_pred eccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 003177 598 LEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 676 (842)
Q Consensus 598 l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~ 676 (842)
+..+..-..+..|++++ .++++...++.|+.||..++.. ..+ .....+.++++++++. ++++ . ++.|.+||..
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~ 81 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNWK 81 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEECC
Confidence 44455567789999964 4555666688999999987553 222 2456799999999988 4433 3 5689999999
Q ss_pred CCceeeEEeec-----CCeeEEEEeCCCCEEEEEEcC-----------CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 003177 677 NGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAIE-----------NYISILDVETQVCRLKLQGHKNQVHSVCWNTS 740 (842)
Q Consensus 677 t~~~i~~~~~~-----~~i~~v~~sp~g~~l~~~s~d-----------g~I~IwDl~t~~~~~~l~~h~~~V~sl~~spd 740 (842)
+++........ ..+..++++|+++.+++.... +.|+.+|.. ++... +..+......++|+|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCC
Confidence 88765444321 236789999998866654332 345555544 33322 2223345689999999
Q ss_pred CCEEEEEe--CCeEEEEEcC--CCCCc--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccC
Q 003177 741 GEYLASVS--DELVRVWSIG--SGSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 813 (842)
Q Consensus 741 g~~Lasgs--Dg~I~IwDl~--s~~~~--~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h 813 (842)
++.|+.+. ++.|.+||+. ++... ..+..+......+..++++++|...++....+.|.+||..+++.+ .+..+
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 99776655 7899999984 44211 122333334456789999999976666666778999999988877 55556
Q ss_pred CCCeeEEEEe-CCCCEEEEEe
Q 003177 814 DKLVSSLAAS-TVNGMVASAS 833 (842)
Q Consensus 814 ~~~V~sla~s-pdg~~Lasgs 833 (842)
...+++++|. |+++.|+.++
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEE
T ss_pred CCCceEEEEeCCCCCEEEEEc
Confidence 6789999998 8887665544
No 210
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.44 E-value=6.4e-12 Score=151.43 Aligned_cols=245 Identities=13% Similarity=0.041 Sum_probs=168.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEE-----CCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe-------
Q 003177 558 ASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT------- 625 (842)
Q Consensus 558 gH~~~V~sv~fSpdg~~Lasgs-----~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~------- 625 (842)
+|...|..++|||||++||.+. ....|+|||+.+++.+... .+......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 3555688899999999988543 2357999999999865431 111113578899 9999999988743
Q ss_pred ------EEEEEcCCCCc---eeeEeec-CccceEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCc-eeeEEee-cCCe
Q 003177 626 ------VRVWDTENPDY---SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGS-CAGVFKC-QSGA 690 (842)
Q Consensus 626 ------I~IWDl~t~~~---~i~~~~~-h~~~V~sl~fspdg~~llasgs~D---g~I~vwDl~t~~-~i~~~~~-~~~i 690 (842)
|++|++.++.. .+..... |...+.++.|+|+|+.++++.+.+ ..|+++|+.++. ....+.. ....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 99999987543 2222223 445578899999999887776533 589999998763 3333333 3333
Q ss_pred eEEEEeCCCCEEEEEEcC----CeEEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCC
Q 003177 691 TQMRFQPRLGRILAAAIE----NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSG 760 (842)
Q Consensus 691 ~~v~~sp~g~~l~~~s~d----g~I~IwDl~t~~~--~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~ 760 (842)
... ++++++.|+..+.. +.|.++|+.++.. ...+..|...+. .|++++++|+... ++ .|++||+..+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 333 77777877766653 5799999987643 234555666665 8899999888776 54 7899998753
Q ss_pred CCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeEEEEc
Q 003177 761 SKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS 811 (842)
Q Consensus 761 ~~~~~i~~~~~-~~~~I~sv~~spdg~~L~sgs~d----g~I~Iwdl~~~~~~~~~ 811 (842)
....+.. ....+..+.+++++..|+....+ +.|+.||+.+++...+.
T Consensus 361 ----~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 361 ----RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp ----EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred ----eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 3333332 34567777888888877777665 68999999888755443
No 211
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.44 E-value=4.6e-11 Score=134.77 Aligned_cols=230 Identities=10% Similarity=0.020 Sum_probs=161.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCce
Q 003177 603 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSC 680 (842)
Q Consensus 603 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~ 680 (842)
.....|+|+++++++++...++.|++||..++.. ..+........ ++|++++..++ +++.++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~--~~~~~~~~~~~-ia~~~~g~~l~-~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV--TTVHPGFKGGK-PAVTKDKQRVY-SIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE--EEEEETCCBCB-CEECTTSSEEE-EEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE--EEeeccCCCCc-eeEecCCCcEE-EEecCCCceEEEEEcCCCce
Confidence 4688999999999777777789999999986543 33322233334 99999988555 454444 899999876655
Q ss_pred eeEE----e-ecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE----EeCCCCCE--EEEEEcCCCCEEEEEe-
Q 003177 681 AGVF----K-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK----LQGHKNQV--HSVCWNTSGEYLASVS- 748 (842)
Q Consensus 681 i~~~----~-~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~----l~~h~~~V--~sl~~spdg~~Lasgs- 748 (842)
...+ . ....+.+++++|+++.|+++..++.|+.||..++..... ..++.... ..++|+|++..|+.+.
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 4444 2 235578899999777777777788999999987754332 22222222 3999999655454444
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecC---------------CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEc
Q 003177 749 -DELVRVWSIGSGSKGECIHELSCT---------------GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLS 811 (842)
Q Consensus 749 -Dg~I~IwDl~s~~~~~~i~~~~~~---------------~~~I~sv~~spdg~~L~sgs-~dg~I~Iwdl~~~~~~~~~ 811 (842)
++.|+.|+.... +..+.++ -.....++++++|..+++-. .++.|+.|++.++....+.
T Consensus 287 ~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 287 NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 779999987643 2222222 13478899999999555545 5679999998888877665
Q ss_pred cC---------------CCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 812 AH---------------DKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 812 ~h---------------~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
++ -.....|++++++.++++-..+++|+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 55 2468999999998888887788888765
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.41 E-value=1.1e-10 Score=131.76 Aligned_cols=232 Identities=9% Similarity=0.040 Sum_probs=163.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCcee
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSL 638 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~t~~~~i 638 (842)
.....|+|+++++++++...++.|++||..++........... .. ++|++++..|+++..++ .|.+|+...... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence 4688999999999877777789999999998877665544333 33 99999999999998866 799999876543 2
Q ss_pred eEe----ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeE----EeecCCe--e-EEEEeCCCCEEEEEEc
Q 003177 639 RTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGA--T-QMRFQPRLGRILAAAI 707 (842)
Q Consensus 639 ~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~----~~~~~~i--~-~v~~sp~g~~l~~~s~ 707 (842)
..+ ......+.+++++|++..+++ +..++.|+.||..++..... ....... . .++|+|+++.++++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 232 214466789999996565665 66788999999987764332 1111222 2 9999997666666654
Q ss_pred -CCeEEEEECCCCeEEEEEeCCC---------------CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEe
Q 003177 708 -ENYISILDVETQVCRLKLQGHK---------------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHEL 769 (842)
Q Consensus 708 -dg~I~IwDl~t~~~~~~l~~h~---------------~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~ 769 (842)
.+.|+.||.... +..+.++. .....++++++|.++++-. ++.|++|++.++ . +..+
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G---~-v~~~ 360 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG---Y-VSTV 360 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT---E-EEEE
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC---E-EEEE
Confidence 689999998754 22333322 3578999999999776654 569999998766 2 3333
Q ss_pred ecC---------------CCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 770 SCT---------------GNKFHSCVFHPTFPSLLVIGCYETLELWNM 802 (842)
Q Consensus 770 ~~~---------------~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl 802 (842)
.++ -.....+++++++..+++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 332 245788999999765555555668887765
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.41 E-value=4.4e-10 Score=122.41 Aligned_cols=220 Identities=15% Similarity=0.086 Sum_probs=154.4
Q ss_pred eEEEEEcCCCC-EEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEe
Q 003177 563 VESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 641 (842)
Q Consensus 563 V~sv~fSpdg~-~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~ 641 (842)
..+++|++++. ++++...++.|.+||..+++.. .+. ....|.+++|+++++++++. .+ .|.+||..++.. ..+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~--~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL--TLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE--EEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE--EEE
Confidence 56789999754 5666667889999999887654 232 34679999999999877754 44 499999887653 222
Q ss_pred ecC-----ccceEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEc-CC
Q 003177 642 TGH-----STTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN 709 (842)
Q Consensus 642 ~~h-----~~~V~sl~fspdg~~llasgs~------Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~-dg 709 (842)
... ...+.+++++|+|..++ +... .+.|..++ +++.............++|+|+++.++++.. ++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v-~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWI-GTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEE-EEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEE-EeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 211 24688999999987444 4332 24566666 4554443333355778999999988776654 68
Q ss_pred eEEEEECC--CC-e-----EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003177 710 YISILDVE--TQ-V-----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 780 (842)
Q Consensus 710 ~I~IwDl~--t~-~-----~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 780 (842)
.|.+||+. ++ . ....+......+.+++++++|.++++.. ++.|.+||. ++ ..+..+......+++++
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g---~~~~~i~~~~~~~~~~a 277 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPA 277 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEE
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC---CEEEEEECCCCCcEEEE
Confidence 99999986 55 2 2333333445678999999999877766 689999998 44 45556666667799999
Q ss_pred Ee-CCCCEEEEEEcCC
Q 003177 781 FH-PTFPSLLVIGCYE 795 (842)
Q Consensus 781 ~s-pdg~~L~sgs~dg 795 (842)
|. +++..|++++..+
T Consensus 278 f~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 278 FIGPDASRLLVTSARE 293 (326)
T ss_dssp EESTTSCEEEEEEBCT
T ss_pred EecCCCCEEEEEecCC
Confidence 98 8888887776544
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.40 E-value=6.4e-12 Score=137.99 Aligned_cols=260 Identities=9% Similarity=-0.002 Sum_probs=170.5
Q ss_pred CCeEEEEEcCCCCEEEEEE--CCCcEEEEecCCCeEEEEe-------ccCCCCeEEEEEcCCCCEEEEEeC-----CCeE
Q 003177 561 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSA-----DRTV 626 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs--~Dg~I~vwd~~t~~~~~~l-------~~h~~~I~~l~fspdg~~Latgs~-----Dg~I 626 (842)
..+..|+++++|+++++.. .++.++||.+.+++.. .+ ..|...+.+++|+++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6799999999999988864 2343555555455433 22 234567999999999876665543 5789
Q ss_pred EEEEcCCCCceeeEeec------CccceEEEEEcCCCCcEEEEEe---CCCcEEEEECCCCceeeEEeecCCee--EEEE
Q 003177 627 RVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKCQSGAT--QMRF 695 (842)
Q Consensus 627 ~IWDl~t~~~~i~~~~~------h~~~V~sl~fspdg~~llasgs---~Dg~I~vwDl~t~~~i~~~~~~~~i~--~v~~ 695 (842)
.+||+.+++. +..+.. +...+..+++++++..++++.. .++.|.+||+.+++..+.+..+.... ...+
T Consensus 96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 9999987653 333332 2245689999987666666665 68899999999888766553211110 1334
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcC---CCCC--ce---e
Q 003177 696 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIG---SGSK--GE---C 765 (842)
Q Consensus 696 sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg-~I~IwDl~---s~~~--~~---~ 765 (842)
.+++..+.+...++.+..|. ..+..|+|+|+++.|+++. ++ .|..++.. .+.. .. .
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 44555555556666665442 2467899999999888877 44 56655532 1100 00 0
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc--CCCCeeEEEEeCCCCEEEEEeCCCc
Q 003177 766 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKC 837 (842)
Q Consensus 766 i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~--h~~~V~sla~spdg~~Lasgs~DG~ 837 (842)
+.. .++......++++++|..+++...++.|.+||..+++...+.. +...+.+++|.+++.++++.+..+.
T Consensus 241 ~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 241 IER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHH 313 (343)
T ss_dssp CEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred eEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccc
Confidence 111 1223355678999999877777778899999986666554332 3456899999999988888765443
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.38 E-value=5.6e-11 Score=134.12 Aligned_cols=237 Identities=14% Similarity=0.181 Sum_probs=169.9
Q ss_pred EEEEcCCCCEEEEEE----------CCCcEEEEecCCCeEEEEeccC-------CCCeEEEEEcCCCCEEEEEeC--CCe
Q 003177 565 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSA--DRT 625 (842)
Q Consensus 565 sv~fSpdg~~Lasgs----------~Dg~I~vwd~~t~~~~~~l~~h-------~~~I~~l~fspdg~~Latgs~--Dg~ 625 (842)
.++++|||++|+++. .++.|.++|..+++.+.++.-. ......+.|+||+++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999888876 3678999999999998877532 234567899999999999875 578
Q ss_pred EEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeE----EeecC-C-eeEEEEeCCC
Q 003177 626 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQS-G-ATQMRFQPRL 699 (842)
Q Consensus 626 I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~----~~~~~-~-i~~v~~sp~g 699 (842)
|.+.|+.+.+. +..+.-.. +....|++...+++.+.||.+.+.++.+++.... +.... . ...+.+.+++
T Consensus 202 VsVID~~t~kv-v~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg 276 (426)
T 3c75_H 202 VGVVDLEGKTF-DRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS 276 (426)
T ss_dssp EEEEETTTTEE-EEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred EEEEECCCCeE-EEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence 99999998664 44443211 1344566666777777899999999866665532 11111 1 1245678999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEE--EEeC----------CCCCEEEEEEcCCCCEEEEEe-----------CCeEEEEE
Q 003177 700 GRILAAAIENYISILDVETQVCRL--KLQG----------HKNQVHSVCWNTSGEYLASVS-----------DELVRVWS 756 (842)
Q Consensus 700 ~~l~~~s~dg~I~IwDl~t~~~~~--~l~~----------h~~~V~sl~~spdg~~Lasgs-----------Dg~I~IwD 756 (842)
..++.....+.|++.|+....... .+.. .......+++++++..+++.. ++.|.++|
T Consensus 277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID 356 (426)
T 3c75_H 277 GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN 356 (426)
T ss_dssp CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence 988888888999999997654321 1110 011112368999988777653 24799999
Q ss_pred cCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCeEEEE
Q 003177 757 IGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL 810 (842)
Q Consensus 757 l~s~~~~~~i~~~~~~~~~I~sv~~spdg~-~L~sgs-~dg~I~Iwdl~~~~~~~~ 810 (842)
+.+. +.+..+.. ......+.|+|+++ +++++. .++.|.++|+.+++.+..
T Consensus 357 ~~T~---kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 357 AETG---ERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp TTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CCCC---eEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 9998 56666543 23588899999999 888888 488999999999998844
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.38 E-value=1e-10 Score=125.93 Aligned_cols=234 Identities=11% Similarity=0.115 Sum_probs=162.0
Q ss_pred EEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003177 554 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 632 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~-~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 632 (842)
..+..+........|+++|+ +++++..++.|..|+. +++ ...+..+...+.+++++++|+++++...++.|.+|+.+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 33445556678899999998 5667777899999997 444 34555567789999999999977666666889999986
Q ss_pred CCCceeeEeecC-----ccceEEEEEcCCCCcEEEE----EeC-------------CCcEEEEECCCCceeeEEeecCCe
Q 003177 633 NPDYSLRTFTGH-----STTVMSLDFHPSKEDLLCS----CDN-------------NSEIRYWSINNGSCAGVFKCQSGA 690 (842)
Q Consensus 633 t~~~~i~~~~~h-----~~~V~sl~fspdg~~llas----gs~-------------Dg~I~vwDl~t~~~i~~~~~~~~i 690 (842)
+. +..+..+ ...+.+++++++|. ++++ +.. .+.|+.||..+++..... .....
T Consensus 116 -g~--~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p 190 (305)
T 3dr2_A 116 -GQ--AHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP 190 (305)
T ss_dssp -SC--EEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE
T ss_pred -CC--EEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC
Confidence 33 2222211 13467899999987 4544 221 256888888777665544 44567
Q ss_pred eEEEEeCCCCEEEEEEcC------CeEEEEECCCCeE--EEEE-eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCC
Q 003177 691 TQMRFQPRLGRILAAAIE------NYISILDVETQVC--RLKL-QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS 761 (842)
Q Consensus 691 ~~v~~sp~g~~l~~~s~d------g~I~IwDl~t~~~--~~~l-~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~ 761 (842)
..++|+|+++.++++... +.|.+||+..+.. ...+ .........++++++|+++++. .+.|.+|+.. +
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~-g- 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD-G- 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECTT-S-
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECCC-C-
Confidence 889999999988888775 7899999876531 1111 1123445678999999955544 4459999974 3
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 762 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 801 (842)
Q Consensus 762 ~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwd 801 (842)
+.+..+.... .+..++|.++++.|++++.++ |+.++
T Consensus 268 --~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 268 --QLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp --CEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred --CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 4555555444 588899999999888888764 44444
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.37 E-value=8.4e-11 Score=126.53 Aligned_cols=235 Identities=6% Similarity=-0.005 Sum_probs=160.0
Q ss_pred EEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEE
Q 003177 595 KSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 673 (842)
Q Consensus 595 ~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vw 673 (842)
+..+..+........|+++++ ++++...++.|..|+.. +. ...+..+...+..++++++|. ++++...++.|.+|
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~--~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT--VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRS 112 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC--EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC--EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEE
Confidence 334444556778999999998 55666678899999984 33 445555677899999999987 55555556789999
Q ss_pred ECCCCceeeEEee-----cCCeeEEEEeCCCCEEEE----EEc-------------CCeEEEEECCCCeEEEEEeCCCCC
Q 003177 674 SINNGSCAGVFKC-----QSGATQMRFQPRLGRILA----AAI-------------ENYISILDVETQVCRLKLQGHKNQ 731 (842)
Q Consensus 674 Dl~t~~~i~~~~~-----~~~i~~v~~sp~g~~l~~----~s~-------------dg~I~IwDl~t~~~~~~l~~h~~~ 731 (842)
+.. ++....... ...+..+++.++|..+++ +.. .+.|+.||..+++..... ....
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 986 554333222 134678999999987775 221 256888888766544332 3346
Q ss_pred EEEEEEcCCCCEEEEEe-C------CeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 732 VHSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 732 V~sl~~spdg~~Lasgs-D------g~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
...++|+||++.|+++. . +.|++|++.... ......+ .........++++++|+ |++++.+ .|.+|+..
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~ 266 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSD 266 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECTT
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECCC
Confidence 78899999999877766 4 689999987542 1111111 11234456789999998 5555544 59999985
Q ss_pred CCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 804 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 804 ~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
......+..+. .+.+++|+++++.|+.++.++..++
T Consensus 267 g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 267 GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp SCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 44333444443 6899999999988888888776554
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.37 E-value=8.7e-10 Score=120.02 Aligned_cols=221 Identities=9% Similarity=0.004 Sum_probs=150.3
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceee
Q 003177 604 WITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 682 (842)
Q Consensus 604 ~I~~l~fspdg~-~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~ 682 (842)
...+++|++++. ++++...++.|.+||..++.. ..+. ....+.+++|++++. +++++ . ..|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~~-~~~~v~~i~~~~dg~-l~v~~-~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--TVHA-LPFMGSALAKISDSK-QLIAS-D-DGLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEEE-CSSCEEEEEEEETTE-EEEEE-T-TEEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--EEEE-CCCcceEEEEeCCCe-EEEEE-C-CCEEEEECCCCcEEE
Confidence 456788999754 556666788999999987542 3332 346799999999976 44333 3 459999998887654
Q ss_pred EEeec-----CCeeEEEEeCCCCEEEEEEc------CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C
Q 003177 683 VFKCQ-----SGATQMRFQPRLGRILAAAI------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D 749 (842)
Q Consensus 683 ~~~~~-----~~i~~v~~sp~g~~l~~~s~------dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D 749 (842)
..... ..+..++++++++.+++... .+.|+.+| +++.... ..+......++|+|+++.|+.+. +
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~-~~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL-FADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE-EEEESSEEEEEECTTSCEEEEEETTT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe-eCCCcccCCeEEcCCCCEEEEEECCC
Confidence 33321 24788999999986665443 25677777 4544332 22334578999999999776665 6
Q ss_pred CeEEEEEcC--CC-CC--ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEe
Q 003177 750 ELVRVWSIG--SG-SK--GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 823 (842)
Q Consensus 750 g~I~IwDl~--s~-~~--~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~s 823 (842)
+.|.+||+. ++ .. ...+..+......+..++++++|.++++...++.|.+||.. ++.+ .+..+...+++++|+
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEEe
Confidence 799999986 44 21 12233333334567889999999866665567899999984 5544 555566679999998
Q ss_pred -CCCCEEEEEeC
Q 003177 824 -TVNGMVASASH 834 (842)
Q Consensus 824 -pdg~~Lasgs~ 834 (842)
++++.|++++.
T Consensus 280 g~d~~~L~vt~~ 291 (326)
T 2ghs_A 280 GPDASRLLVTSA 291 (326)
T ss_dssp STTSCEEEEEEB
T ss_pred cCCCCEEEEEec
Confidence 88876655543
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.34 E-value=1.6e-11 Score=136.75 Aligned_cols=172 Identities=14% Similarity=0.122 Sum_probs=138.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEecCCCe-----------EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 562 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~-----------~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
.+..+++++...+|++|+.+ .+++|++++.+ ....+ .+.. |+.|+| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 58999999999999999987 46669865433 11222 3566 999999 89999999 889999999
Q ss_pred cCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCe
Q 003177 631 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 710 (842)
Q Consensus 631 l~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~ 710 (842)
+.+... ......|...|.++.+.+.. ++++..||.|.+||+.++.... ....|.|++|+|+| ++++..||.
T Consensus 113 v~sl~~-~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 113 LEELSE-FRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp SSSTTC-EEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSC
T ss_pred chhhhc-cCccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCc
Confidence 987553 45566677888888877542 6678899999999999887653 34689999999998 788999999
Q ss_pred EEEEECCCCeE--EEEE------e---CCCCCEEEEEEcCCCCEEEEEe
Q 003177 711 ISILDVETQVC--RLKL------Q---GHKNQVHSVCWNTSGEYLASVS 748 (842)
Q Consensus 711 I~IwDl~t~~~--~~~l------~---~h~~~V~sl~~spdg~~Lasgs 748 (842)
|++|+...... ..++ . +|...|.+|+|.+++.++++-.
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999988875 5566 2 3778999999999999998754
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.31 E-value=2.3e-11 Score=135.01 Aligned_cols=254 Identities=11% Similarity=0.051 Sum_probs=172.8
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEecCCCeEEEEeccC-------CCCeEEEEEcCCCC
Q 003177 553 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLS 615 (842)
Q Consensus 553 i~~l~gH~~~V~sv~fSpdg~~Lasgs----------~Dg~I~vwd~~t~~~~~~l~~h-------~~~I~~l~fspdg~ 615 (842)
+..+..-..+ .+.|+||+++|+++. .++.|.+||+.+++.+.++..+ ......++|+|||+
T Consensus 59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk 136 (368)
T 1mda_H 59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136 (368)
T ss_dssp EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC
Confidence 3444433345 799999999988886 3688999999999999888643 13466899999999
Q ss_pred EEEEEeC--CCeEEE--EEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-----Cceee----
Q 003177 616 RLATSSA--DRTVRV--WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAG---- 682 (842)
Q Consensus 616 ~Latgs~--Dg~I~I--WDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-----~~~i~---- 682 (842)
+++++.. +..|.+ +|+.+ +..+.-. . |+.+.|++...+++.+.|+.+.+.|+.+ ++.+.
T Consensus 137 ~lyVan~~~~~~v~V~~iD~~t----v~~i~v~-~---~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~ 208 (368)
T 1mda_H 137 CLLFFLFGSSAAAGLSVPGASD----DQLTKSA-S---CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208 (368)
T ss_dssp CEEEEECSSSCEEEEEETTTEE----EEEEECS-S---CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT
T ss_pred EEEEEccCCCCeEEEEEEchhh----ceEEECC-C---ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeee
Confidence 9999875 457888 88876 2333211 1 1234566776777777899999999986 44331
Q ss_pred EEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC--eEEEEEeCC----------CCCEEEEEEcCCCCEEEEEe--
Q 003177 683 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGH----------KNQVHSVCWNTSGEYLASVS-- 748 (842)
Q Consensus 683 ~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~--~~~~~l~~h----------~~~V~sl~~spdg~~Lasgs-- 748 (842)
.+....... . .++++.++..+. +.|.+.|+.+. +.+..+.-. ......+++++|++.++++.
T Consensus 209 ~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~ 284 (368)
T 1mda_H 209 AQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284 (368)
T ss_dssp TSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred eeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence 111111111 3 777777777777 99999999754 222222110 01112268999998877643
Q ss_pred C--------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE--cCCeEEEEECCCCeEEEEccCCCCee
Q 003177 749 D--------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG--CYETLELWNMTENKTLTLSAHDKLVS 818 (842)
Q Consensus 749 D--------g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs--~dg~I~Iwdl~~~~~~~~~~h~~~V~ 818 (842)
. +.+.++|+.+. +.+..+.... ....++|++++++++++. .++.|.++|+.+++.+....-.....
T Consensus 285 ~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~ 360 (368)
T 1mda_H 285 HSRSCLAAAENTSSVTASVG---QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE 360 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSC---CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred ccCcccccCCCEEEEECCCC---eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCC
Confidence 2 36779999988 5566555432 688999999998655554 48999999999999996655556666
Q ss_pred EEEEeC
Q 003177 819 SLAAST 824 (842)
Q Consensus 819 sla~sp 824 (842)
.+++.+
T Consensus 361 ~i~~~~ 366 (368)
T 1mda_H 361 SLSVQN 366 (368)
T ss_dssp EEECCC
T ss_pred EEEeec
Confidence 777654
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.31 E-value=4.1e-09 Score=116.42 Aligned_cols=255 Identities=13% Similarity=0.077 Sum_probs=165.9
Q ss_pred CCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccce--
Q 003177 571 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-- 648 (842)
Q Consensus 571 dg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V-- 648 (842)
++..|++++.++.|+.+|..+++.+..+............. +..+++++.++.|..+|..+++. +..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~-~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAV-KWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCE-EEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcE-EEEEeCCCCceee
Confidence 35578888899999999999999887665443222222222 45788888999999999988764 33333221110
Q ss_pred ---EEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCee--------EEEEeC--CCCEEEEEEcCCeEEEEE
Q 003177 649 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT--------QMRFQP--RLGRILAAAIENYISILD 715 (842)
Q Consensus 649 ---~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~--------~v~~sp--~g~~l~~~s~dg~I~IwD 715 (842)
...... +. .++.+..++.|..+|..+++.+..+....... .+...| .++.+++++.++.|..+|
T Consensus 179 ~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 179 RGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred cCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 122222 23 45567789999999999999888776432100 011111 357788888899999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEc
Q 003177 716 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC 793 (842)
Q Consensus 716 l~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~sv~~spdg~~L~sgs~ 793 (842)
.++++.+..... .....+.. ++..|++++ ++.|..+|..++ +.+..... ....+....+. +..|++++.
T Consensus 256 ~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~ 326 (376)
T 3q7m_A 256 LRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGG---VTLWTQSDLLHRLLTSPVLY--NGNLVVGDS 326 (376)
T ss_dssp TTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTC---CEEEEECTTTTSCCCCCEEE--TTEEEEECT
T ss_pred CCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCC---cEEEeecccCCCcccCCEEE--CCEEEEEeC
Confidence 999988877652 33444444 345555555 889999999988 44444432 12223333332 457999999
Q ss_pred CCeEEEEECCCCeEEE-EccCCCCeeE-EEEeCCCCEEEEEeCCCcEEEcC
Q 003177 794 YETLELWNMTENKTLT-LSAHDKLVSS-LAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 794 dg~I~Iwdl~~~~~~~-~~~h~~~V~s-la~spdg~~Lasgs~DG~V~IWd 842 (842)
+|.|+++|..+++.+. .......+.. .... +..|+.++.||.|+.||
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence 9999999999999873 3332333332 2222 45778889999999875
No 222
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.25 E-value=1.1e-09 Score=131.51 Aligned_cols=263 Identities=12% Similarity=0.088 Sum_probs=181.1
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEeccCCC-----------CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeE
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----------WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~-----------~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~ 640 (842)
+..|++++.++.|+.+|..+++.+..+..... ....+++ ++..|++++.|+.|..+|..+++. +..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~-~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKE-VWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE-EEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCE-Eee
Confidence 45677777889999999999999977754321 0112333 456888899999999999998875 444
Q ss_pred eecC-c----cceEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCceeeEEeecCCe-------------------
Q 003177 641 FTGH-S----TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA------------------- 690 (842)
Q Consensus 641 ~~~h-~----~~V~s-l~fspdg~~llasgs-----~Dg~I~vwDl~t~~~i~~~~~~~~i------------------- 690 (842)
+..+ . ..+.+ ..+. +..+++.++ .++.|+.||..+|+.+..+......
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred ecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 4333 1 11211 1111 243443332 2689999999999999887652211
Q ss_pred --------------eEEEEeCCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEeC--CC------
Q 003177 691 --------------TQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK------ 729 (842)
Q Consensus 691 --------------~~v~~sp~g~~l~~~s~dg-------------------~I~IwDl~t~~~~~~l~~--h~------ 729 (842)
..++++++++.++++..++ .|..+|.++++.+..+.. |.
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 3578899999998887654 599999999999988764 21
Q ss_pred -CCEEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-----------Cce-----------------
Q 003177 730 -NQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCTG-----------NKF----------------- 776 (842)
Q Consensus 730 -~~V~sl~~spdg---~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-----------~~I----------------- 776 (842)
.....+....+| ..|+.++ +|.|+++|..+++ .+..+.... ..+
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK---FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC---EeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 122233344477 5777777 9999999999984 443332111 111
Q ss_pred -------EEEEEeCCCCEEEEEEcC-------------------------------------------CeEEEEECCCCe
Q 003177 777 -------HSCVFHPTFPSLLVIGCY-------------------------------------------ETLELWNMTENK 806 (842)
Q Consensus 777 -------~sv~~spdg~~L~sgs~d-------------------------------------------g~I~Iwdl~~~~ 806 (842)
..++++|+...+++...+ +.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 146889998888876542 689999999999
Q ss_pred EEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 807 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 807 ~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.+....+...+....+..++.++++++.||.|++||
T Consensus 469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 885545555666666777888999999999999986
No 223
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.24 E-value=5.9e-10 Score=134.07 Aligned_cols=266 Identities=11% Similarity=0.096 Sum_probs=175.9
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEeccCCCC----------e-EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeE
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~----------I-~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~ 640 (842)
+..|++++.++.|+.+|..+|+.+-.+..+... + ..+.+ ++..|++++.|+.|+.+|..+++.....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557777888899999999999999877543221 0 11222 3568888999999999999998764333
Q ss_pred eec-CccceEEEEEcC--CCCcEEEEEe-----CCCcEEEEECCCCceeeEEeecC------------------------
Q 003177 641 FTG-HSTTVMSLDFHP--SKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQS------------------------ 688 (842)
Q Consensus 641 ~~~-h~~~V~sl~fsp--dg~~llasgs-----~Dg~I~vwDl~t~~~i~~~~~~~------------------------ 688 (842)
... +......+..+| .+..+++.++ .++.|+.||.++|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 222 111111111111 1233443332 36899999999999988776310
Q ss_pred --------CeeEEEEeCCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEeC--CC-------CCE
Q 003177 689 --------GATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------NQV 732 (842)
Q Consensus 689 --------~i~~v~~sp~g~~l~~~s~dg-------------------~I~IwDl~t~~~~~~l~~--h~-------~~V 732 (842)
....++++|+.+.++++..++ .|..||.++++.+..+.. |. ..+
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 012578899889999888775 399999999999988764 22 122
Q ss_pred EEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-----------------------------------
Q 003177 733 HSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG----------------------------------- 773 (842)
Q Consensus 733 ~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~----------------------------------- 773 (842)
.......+|+ +|+.++ +|.|+++|..+++ .+.......
T Consensus 308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~ 384 (689)
T 1yiq_A 308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE---LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA 384 (689)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred EEEeeccCCcEEEEEEEECCCCeEEEEECCCCC---EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence 2223333565 677777 9999999999984 332111100
Q ss_pred ----CceEEEEEeCCCCEEEEEEc---------------------------------------------CCeEEEEECCC
Q 003177 774 ----NKFHSCVFHPTFPSLLVIGC---------------------------------------------YETLELWNMTE 804 (842)
Q Consensus 774 ----~~I~sv~~spdg~~L~sgs~---------------------------------------------dg~I~Iwdl~~ 804 (842)
.....++|+|+...+++... ++.|+.||+.+
T Consensus 385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence 00122688998887777632 36799999999
Q ss_pred CeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 805 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 805 ~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++.+-...+...+..-.+...+.+|++++.||.|++||
T Consensus 465 G~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 465 QQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp TEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEE
Confidence 99884433444444446667788999999999999986
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.24 E-value=8e-14 Score=155.15 Aligned_cols=223 Identities=14% Similarity=0.040 Sum_probs=121.2
Q ss_pred CCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCcc-ceE
Q 003177 571 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM 649 (842)
Q Consensus 571 dg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~-~V~ 649 (842)
++.+|++++.||.|+.||..+++.+..+.. +.+.+..+..++..+++++.||.|+.||..+++. +..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCccccc
Confidence 577899999999999999999999988765 4565666667787888888999999999987664 333332211 111
Q ss_pred -EEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 003177 650 -SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH 728 (842)
Q Consensus 650 -sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h 728 (842)
+..+. .+. .+++++.|+.|+.||..+|+.+..+.... ...++|+++.+++++.++.|+.||.++++.+..+..+
T Consensus 85 ~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 85 ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 11111 223 45677789999999999999988776543 2345678888999999999999999998776555421
Q ss_pred CCCEEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE--EEcCCeEEEEEC
Q 003177 729 KNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV--IGCYETLELWNM 802 (842)
Q Consensus 729 ~~~V~sl~~spdg---~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~s--gs~dg~I~Iwdl 802 (842)
. ....+++.+. ..+++++ |+.|+.||..++ +.+.........+...++++++...+. ...++.++.+|.
T Consensus 160 ~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~ 234 (369)
T 2hz6_A 160 D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTF 234 (369)
T ss_dssp E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHH
T ss_pred c--ccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEecCCCceEEEEEecCCceEeccceeecccceeeeeh
Confidence 1 1222333331 3344455 999999999988 455555433332333445555542110 011334556665
Q ss_pred CCCe
Q 003177 803 TENK 806 (842)
Q Consensus 803 ~~~~ 806 (842)
.+|+
T Consensus 235 ~tG~ 238 (369)
T 2hz6_A 235 MSGE 238 (369)
T ss_dssp HHHH
T ss_pred hcCC
Confidence 5554
No 225
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.24 E-value=2.7e-10 Score=122.63 Aligned_cols=258 Identities=9% Similarity=-0.003 Sum_probs=170.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEe
Q 003177 562 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 641 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~ 641 (842)
.+.++.+.++|. |.+++.+ |..||. +++.+..+......+....+. +..|++++.++.|..+|.. +.. ...+
T Consensus 61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~-~~~~ 132 (330)
T 3hxj_A 61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE-KWRF 132 (330)
T ss_dssp EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE-EEEE
T ss_pred cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE-EEEE
Confidence 356777777775 4445444 888885 555443333222222233333 5567888889999999988 443 4444
Q ss_pred ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003177 642 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQV 720 (842)
Q Consensus 642 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~ 720 (842)
..+...+.++...+++. ++.++.++.|..||.. ++....+... ..+.++.+.+++..+ +++ +.|..|| .+++
T Consensus 133 ~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 133 KTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGT 205 (330)
T ss_dssp ECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSC
T ss_pred cCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCc
Confidence 44555566777776665 4456778999999999 8777666643 345666776776644 444 8899999 7777
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003177 721 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 800 (842)
Q Consensus 721 ~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iw 800 (842)
.+..+......+.++..+++|.++++..++.|..+|. ++ ..+..+......+..+.+.+++ .|++++.++.|..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 206 EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAI 280 (330)
T ss_dssp EEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEE
T ss_pred EEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEE
Confidence 7777766667788889998887777665888888874 33 3444444444444455666555 58888888899999
Q ss_pred ECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 801 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 801 dl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
|. +++.+ .+......+.++...+++.+ ..++.+|.|++.
T Consensus 281 d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~~ 320 (330)
T 3hxj_A 281 NP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNGKFYAL 320 (330)
T ss_dssp CT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTSCEEEE
T ss_pred CC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCCeEEEE
Confidence 96 56555 44445566778888777764 557889988764
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.23 E-value=1.6e-10 Score=128.10 Aligned_cols=246 Identities=11% Similarity=0.006 Sum_probs=164.8
Q ss_pred cEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEEcCCCCceeeEeecC-------c
Q 003177 583 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENPDYSLRTFTGH-------S 645 (842)
Q Consensus 583 ~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWDl~t~~~~i~~~~~h-------~ 645 (842)
.|.++|..+++.+.++.....+ .+.|+||+++++++. .++.|.+||+.+.+. +..+..+ .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCccccccC
Confidence 8889999999999999766666 799999999999886 368999999998765 5554322 1
Q ss_pred cceEEEEEcCCCCcEEEEEeC-CCcEEE--EECCCCceeeEEeecCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCC---
Q 003177 646 TTVMSLDFHPSKEDLLCSCDN-NSEIRY--WSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVET--- 718 (842)
Q Consensus 646 ~~V~sl~fspdg~~llasgs~-Dg~I~v--wDl~t~~~i~~~~~~~~i~~v~~sp~g-~~l~~~s~dg~I~IwDl~t--- 718 (842)
.....+.|+|||++++++... +..|.+ +|+.+ +..+..... +.+.|++ ..+++.+.||.+.+.|+++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 235689999999988766544 467888 99877 455543322 2233443 3455666788888899887
Q ss_pred --CeEEEE----EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecC-------C---CceEEEEEe
Q 003177 719 --QVCRLK----LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-------G---NKFHSCVFH 782 (842)
Q Consensus 719 --~~~~~~----l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~-------~---~~I~sv~~s 782 (842)
++.... +.....+. .+..++.++++.. +.|.+.|+.+... ..+..+... . .....++++
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEEc
Confidence 433211 11112233 3333444455555 8999999865321 222222111 0 111226899
Q ss_pred CCCCEEEEEEc-C--------CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEe-CCCcEEEcC
Q 003177 783 PTFPSLLVIGC-Y--------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 842 (842)
Q Consensus 783 pdg~~L~sgs~-d--------g~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~-~Lasgs-~DG~V~IWd 842 (842)
++++.++++.. . +.+.++|+.+.+.+....-......|+|++||+ +++++. .++.|.|+|
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 99999988754 2 367799999999884443334689999999998 566666 589999986
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.22 E-value=5e-09 Score=115.75 Aligned_cols=254 Identities=8% Similarity=0.039 Sum_probs=164.9
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEeccC---------CCCeEE-EEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEe
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEEH---------TQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 641 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h---------~~~I~~-l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~ 641 (842)
+..|++++.++.|+.||..+++.+..+... ...+.+ +.. ++..|++++.++.|..+|..+++. +..+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~ 129 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTV-AWQT 129 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCE-EEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCE-EEEE
Confidence 567888888999999999999988665432 122322 222 456788888999999999998775 3333
Q ss_pred ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCee------EEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 642 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT------QMRFQPRLGRILAAAIENYISILD 715 (842)
Q Consensus 642 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~------~v~~sp~g~~l~~~s~dg~I~IwD 715 (842)
............. + . .++.++.++.|..+|..+++.+..+.....+. ...+. ++.+++++.++.|..+|
T Consensus 130 ~~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 130 KVAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp ECSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred eCCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 3222211122222 2 3 55577789999999999999988877644331 22222 46788888899999999
Q ss_pred CCCCeEEEEEeCCCCC----EE---EEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003177 716 VETQVCRLKLQGHKNQ----VH---SVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 785 (842)
Q Consensus 716 l~t~~~~~~l~~h~~~----V~---sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg 785 (842)
..+++.+......... +. .+...| .+..+++++ ++.|..+|..++ +.+.... ......+.. ++
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG---~~~w~~~--~~~~~~~~~--~~ 277 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG---QIMWKRE--LGSVNDFIV--DG 277 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC---CEEEEEC--CCCEEEEEE--ET
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC---cEEeecc--CCCCCCceE--EC
Confidence 9999888776532110 00 010111 244556666 899999999988 4444433 223444444 35
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEcc--CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 786 PSLLVIGCYETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 786 ~~L~sgs~dg~I~Iwdl~~~~~~~~~~--h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
..|++++.++.|+.+|..+++.+.... ....+..+... +..|+.++.+|.|.+||
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence 678999999999999999998873322 22233333333 56788888888888775
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.22 E-value=5.8e-10 Score=134.31 Aligned_cols=236 Identities=13% Similarity=0.107 Sum_probs=157.8
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC-------
Q 003177 600 EHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------- 667 (842)
Q Consensus 600 ~h~~~I~~l~fspdg~~Latgs~-----Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D------- 667 (842)
+|...+..++|+|||++||.+.. ...|++||+.+++.....+. ......++|+ |++.++++...+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK--DVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE--EEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC--CceeccEEEe-CCCEEEEEEecCccccccc
Confidence 45567889999999999885432 35799999998764222222 1123578899 988777665432
Q ss_pred -----CcEEEEECCCCce--eeEEeec----CCeeEEEEeCCCCEEEEEEcC----CeEEEEECCCCe-EEEEEeCCCCC
Q 003177 668 -----SEIRYWSINNGSC--AGVFKCQ----SGATQMRFQPRLGRILAAAIE----NYISILDVETQV-CRLKLQGHKNQ 731 (842)
Q Consensus 668 -----g~I~vwDl~t~~~--i~~~~~~----~~i~~v~~sp~g~~l~~~s~d----g~I~IwDl~t~~-~~~~l~~h~~~ 731 (842)
..|++|++.++.. ...+... .....+.|+|++++|+..... +.|+++|+.++. ....+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 2499999987653 2333322 236789999999998766542 489999998763 34455556666
Q ss_pred EEEEEEcCCCCEEEEEe--C---CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECC
Q 003177 732 VHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT 803 (842)
Q Consensus 732 V~sl~~spdg~~Lasgs--D---g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg---~I~Iwdl~ 803 (842)
.... |+++|..|+..+ + +.|.++|+.++... ....+..+...+. .|++++.+|++...++ .|++||+.
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 5555 666666555444 3 47999999876321 1234444555554 8999999888777655 79999998
Q ss_pred CCeEEEEc-cCCCCeeEEEEeCCCCEEEEEeCC----CcEEEcC
Q 003177 804 ENKTLTLS-AHDKLVSSLAASTVNGMVASASHD----KCVKIWK 842 (842)
Q Consensus 804 ~~~~~~~~-~h~~~V~sla~spdg~~Lasgs~D----G~V~IWd 842 (842)
++....+. .+.+.+..+.++++++.|+....+ +.|+.||
T Consensus 359 g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 359 GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 77655443 345567788888888766554443 6677765
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.20 E-value=2.3e-09 Score=128.66 Aligned_cols=254 Identities=10% Similarity=0.043 Sum_probs=169.9
Q ss_pred CCCEEEEEECCCcEEEEecCCCeEEEEeccC-C----CCeEE-EEEcCCCCEEEEEeC------CCeEEEEEcCCCCcee
Q 003177 571 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH-T----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSL 638 (842)
Q Consensus 571 dg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h-~----~~I~~-l~fspdg~~Latgs~------Dg~I~IWDl~t~~~~i 638 (842)
++..|++++.|+.|+.+|..+++.+..+..+ . ..+.+ ... .+..+++++. ++.|+.||..+++...
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 3568888899999999999999999877654 1 11211 111 2345555543 7999999999887533
Q ss_pred eEeecCc-------------------------------cceEEEEEcCCCCcEEEEEeCCC-------------------
Q 003177 639 RTFTGHS-------------------------------TTVMSLDFHPSKEDLLCSCDNNS------------------- 668 (842)
Q Consensus 639 ~~~~~h~-------------------------------~~V~sl~fspdg~~llasgs~Dg------------------- 668 (842)
....... .....++++++++.++ .+..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy-~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMY-VGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEE-EECCCCccccCCCCCccCCCCeeeE
Confidence 3222110 1113577888876444 554443
Q ss_pred cEEEEECCCCceeeEEeecC----------CeeEEEEeCCC---CEEEEEEcCCeEEEEECCCCeEEEEEeCCCC-----
Q 003177 669 EIRYWSINNGSCAGVFKCQS----------GATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKN----- 730 (842)
Q Consensus 669 ~I~vwDl~t~~~i~~~~~~~----------~i~~v~~sp~g---~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~----- 730 (842)
.|..+|.++++.+..+.... ....+....+| ..+++++.+|.|+++|.++++.+..+.....
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 59999999999998877421 12223333466 5688888999999999999998877653210
Q ss_pred ------CE------------------------EEEEEcCCCCEEEEEe-C------------------------------
Q 003177 731 ------QV------------------------HSVCWNTSGEYLASVS-D------------------------------ 749 (842)
Q Consensus 731 ------~V------------------------~sl~~spdg~~Lasgs-D------------------------------ 749 (842)
.+ ..++|+|++.++++.. +
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 11 1468889888877653 2
Q ss_pred -------------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEc-cCC
Q 003177 750 -------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHD 814 (842)
Q Consensus 750 -------------g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~-~h~ 814 (842)
+.|..||+.++ +.+..+.. ..++....+...+..+++++.++.|++||..+++++ .+. .+.
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 519 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccccccCCCCCccEEEEEeCCCC---cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence 67999999988 55555543 334445567778888999999999999999999988 333 333
Q ss_pred CCeeEEEEeCCCCEEEE
Q 003177 815 KLVSSLAASTVNGMVAS 831 (842)
Q Consensus 815 ~~V~sla~spdg~~Las 831 (842)
....-+.|..+|+.+++
T Consensus 520 ~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 520 VVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cccCCEEEEeCCEEEEE
Confidence 33345566788875443
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.19 E-value=4.4e-09 Score=126.47 Aligned_cols=256 Identities=11% Similarity=0.061 Sum_probs=165.6
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEeccC--CCCeEEEEEcC---CCCEEEEEe------CCCeEEEEEcCCCCceeeE
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSP---SLSRLATSS------ADRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h--~~~I~~l~fsp---dg~~Latgs------~Dg~I~IWDl~t~~~~i~~ 640 (842)
+..|++++.|+.|+.+|..+|+.+..+... ......+..+| ++ .+++++ .+|.|+.||..+++.....
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 557888999999999999999998766532 11111111122 44 444443 3789999999998753332
Q ss_pred eecC------------------------------ccceEEEEEcCCCCcEEEEEeCCC-------------------cEE
Q 003177 641 FTGH------------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EIR 671 (842)
Q Consensus 641 ~~~h------------------------------~~~V~sl~fspdg~~llasgs~Dg-------------------~I~ 671 (842)
.... ......++++|+.+ +++.+..++ .|.
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 2110 01112577888766 555666565 399
Q ss_pred EEECCCCceeeEEeecC----------CeeEEEEeCCCC---EEEEEEcCCeEEEEECCCCeEEEEEeCCC-CC------
Q 003177 672 YWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK-NQ------ 731 (842)
Q Consensus 672 vwDl~t~~~i~~~~~~~----------~i~~v~~sp~g~---~l~~~s~dg~I~IwDl~t~~~~~~l~~h~-~~------ 731 (842)
.||.++|+.+..+.... ......+..++. .+++++.+|.|+++|.++++.+....... ..
T Consensus 279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~ 358 (689)
T 1yiq_A 279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM 358 (689)
T ss_dssp EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence 99999999998887421 111222223444 67788889999999999998875433211 00
Q ss_pred --------------------------------EEEEEEcCCCCEEEEEe-------------------------------
Q 003177 732 --------------------------------VHSVCWNTSGEYLASVS------------------------------- 748 (842)
Q Consensus 732 --------------------------------V~sl~~spdg~~Lasgs------------------------------- 748 (842)
-..++|+|+..++++..
T Consensus 359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (689)
T 1yiq_A 359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM 438 (689)
T ss_dssp TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence 01267888887777652
Q ss_pred ---------------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEcc
Q 003177 749 ---------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA 812 (842)
Q Consensus 749 ---------------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~ 812 (842)
+|.|+.||+.++ +.+..+..+. .+....+...+..+++++.|+.|+.||.++|+.+ .+..
T Consensus 439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 439 MPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp CCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 267999999988 5555554433 2333456667888999999999999999999998 4433
Q ss_pred C-CCCeeEEEEeCCCC-EEEEEe
Q 003177 813 H-DKLVSSLAASTVNG-MVASAS 833 (842)
Q Consensus 813 h-~~~V~sla~spdg~-~Lasgs 833 (842)
. .....-+.|..+|+ |+++.+
T Consensus 515 ~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 515 ASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp SSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCcccCceEEEECCEEEEEEEe
Confidence 3 22234567778887 444443
No 231
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.19 E-value=4.2e-08 Score=103.07 Aligned_cols=247 Identities=9% Similarity=0.003 Sum_probs=161.0
Q ss_pred CEEEEEECCCcEEEEecCCCeE-----EEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeeEeecCcc
Q 003177 573 KLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHST 646 (842)
Q Consensus 573 ~~Lasgs~Dg~I~vwd~~t~~~-----~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~t~~~~i~~~~~h~~ 646 (842)
.+|+.+.. +.|+.++++.... ...+......+.+++|++++..|+.+. .++.|.+++++.... .........
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECCCC
Confidence 34555543 4788888775432 112222234578999999766665554 568999999976442 222222235
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec-CCeeEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEE
Q 003177 647 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCR 722 (842)
Q Consensus 647 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~~v~~sp~g~~l~~~s~d---g~I~IwDl~t~~~~ 722 (842)
....+++++++..++++....+.|.++++............ .....++++|+++.++++... +.|..+++......
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 67899999987778877777889999999754332222222 457899999987887777653 68888888644322
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEE
Q 003177 723 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLEL 799 (842)
Q Consensus 723 ~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~-dg~I~I 799 (842)
............+++++++..|+.+. .+.|.++|+... .....+. .......+++. +..|+++.. .+.|.+
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEE
Confidence 22222334678999999888777666 679999998754 2222222 23344566654 556777765 469999
Q ss_pred EECCCCeEEEE-ccCC-CCeeEEEEeCCCC
Q 003177 800 WNMTENKTLTL-SAHD-KLVSSLAASTVNG 827 (842)
Q Consensus 800 wdl~~~~~~~~-~~h~-~~V~sla~spdg~ 827 (842)
+|..+++.+.. .... .....|++.|++.
T Consensus 234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEEccccccccceeeecCccC
Confidence 99999987743 3222 2477888888764
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.16 E-value=1.9e-08 Score=112.72 Aligned_cols=220 Identities=12% Similarity=0.084 Sum_probs=154.7
Q ss_pred CCCCEEEE-EECCCcEEEEecCCC----eEEEEec-------cCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEc
Q 003177 570 PDGKLLAT-GGHDKKAVLWCTESF----TVKSTLE-------EHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT 631 (842)
Q Consensus 570 pdg~~Las-gs~Dg~I~vwd~~t~----~~~~~l~-------~h~~~I~~l~fspdg~~Latgs~D------g~I~IWDl 631 (842)
.++++|++ +..++.|+|+|+.+. +.+.+++ ........+..+|++ +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77887665 556789999999755 6777773 112245677889999 77766655 78999999
Q ss_pred CCCCceeeEeecC--c-cceEEEEEcCCCCcEEEEEe-------------------CCCcEEEEECCCCceeeEEeec--
Q 003177 632 ENPDYSLRTFTGH--S-TTVMSLDFHPSKEDLLCSCD-------------------NNSEIRYWSINNGSCAGVFKCQ-- 687 (842)
Q Consensus 632 ~t~~~~i~~~~~h--~-~~V~sl~fspdg~~llasgs-------------------~Dg~I~vwDl~t~~~i~~~~~~-- 687 (842)
.+.+. +..+... . ..-+.+.|+|+++.++ +.. .+.+|.+||+.+++.+.++...
T Consensus 172 ~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 172 YSFEP-LGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp TTCCE-EEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred CCCeE-EEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 98664 5555422 1 2244688899988544 543 3689999999999888888764
Q ss_pred -CCeeEEEE--eCCCCEEEEEEc------CCeEEEEECCCCeE--EEE--EeCC----------------CCCEEEEEEc
Q 003177 688 -SGATQMRF--QPRLGRILAAAI------ENYISILDVETQVC--RLK--LQGH----------------KNQVHSVCWN 738 (842)
Q Consensus 688 -~~i~~v~~--sp~g~~l~~~s~------dg~I~IwDl~t~~~--~~~--l~~h----------------~~~V~sl~~s 738 (842)
.....+.| +|+++++++++. ++.|.+|..+.+.. ... +... ......|.++
T Consensus 250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 23455656 999999888875 46887766554421 111 1110 2456789999
Q ss_pred CCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCC--------------ceEEEEEeCCCCEEEEEE
Q 003177 739 TSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGN--------------KFHSCVFHPTFPSLLVIG 792 (842)
Q Consensus 739 pdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~--------------~I~sv~~spdg~~L~sgs 792 (842)
+||++|+++. .+.|.+||+......+.+..+...+. ....+.++|||++|+++.
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999999988 78999999975444456655554321 357899999999999998
No 233
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.16 E-value=5e-10 Score=124.75 Aligned_cols=169 Identities=11% Similarity=0.056 Sum_probs=130.5
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc-----------eeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEE
Q 003177 647 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 715 (842)
Q Consensus 647 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-----------~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwD 715 (842)
.+..+++++..+ ++++|+.+ .+.+|++.... ......... |..++| ++..++++ .++.|++||
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999876 56677766 56669875433 223445556 999999 88888888 889999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003177 716 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 794 (842)
Q Consensus 716 l~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d 794 (842)
+.+.........|...+.++.+.+.. ++++. ||.|.+||+.++. ... +...|++++|+|+| ++++..|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~---~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS---TKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC---EEE----EEESEEEEEECSSE--EEEEETT
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc---ccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 98776555666678889888877653 55555 9999999999773 222 34579999999999 7889999
Q ss_pred CeEEEEECCCCeE--E-EE------c---cCCCCeeEEEEeCCCCEEEEE
Q 003177 795 ETLELWNMTENKT--L-TL------S---AHDKLVSSLAASTVNGMVASA 832 (842)
Q Consensus 795 g~I~Iwdl~~~~~--~-~~------~---~h~~~V~sla~spdg~~Lasg 832 (842)
|.|++|+...+.. . ++ . +|...|.+|.|.+++.+|++=
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999999988774 2 34 2 378899999999999888763
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.09 E-value=7.2e-10 Score=119.28 Aligned_cols=257 Identities=11% Similarity=0.054 Sum_probs=168.8
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecC
Q 003177 565 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 644 (842)
Q Consensus 565 sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h 644 (842)
++.+..++ .|.+++.++.|..|| .+++.+..+..+...+.++...+++. |+.++.+ |..||. +++. +..+...
T Consensus 24 ~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~-~~~~~~~ 96 (330)
T 3hxj_A 24 SPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE-KWRFDTK 96 (330)
T ss_dssp CCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG-GGGSCC-
T ss_pred CceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcE-EEEEECC
Confidence 34455555 456677788999999 88888766665555667788877765 4445444 888886 3332 2222222
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCC-eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003177 645 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRL 723 (842)
Q Consensus 645 ~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~ 723 (842)
...+....+. + . .++.++.++.|..+|.. ++....+..... +.++...+++. +++++.++.|..||.. ++.+.
T Consensus 97 ~~~~~~~~~~-~-~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~ 170 (330)
T 3hxj_A 97 KAIVSDFTIF-E-D-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKW 170 (330)
T ss_dssp ----CCEEEE-T-T-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEE
T ss_pred CCcccCceEE-C-C-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeE
Confidence 2222233333 3 3 45567778999999998 777766654333 45566666654 6677788999999999 87777
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 724 KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 724 ~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
.+......+.++.+.+++.+++++ +.|..|| .++ ..+.........+.++++.+++. |++++.++.|..+|..
T Consensus 171 ~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~ 243 (330)
T 3hxj_A 171 RFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD 243 (330)
T ss_dssp EEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT
T ss_pred EEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC
Confidence 776666677788888888866655 8899999 555 44555555556678888888875 7778888889999854
Q ss_pred CCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 804 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 804 ~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
......+......+.++.+.+++ .|..++.+|.|..+|
T Consensus 244 g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 244 GTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred CCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence 44333444444445556665555 455677777777765
No 235
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.08 E-value=2.5e-09 Score=117.13 Aligned_cols=220 Identities=9% Similarity=0.034 Sum_probs=151.0
Q ss_pred CCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCceeeEe-------ecCccceEEEEEcCCCCcEEEEEeC-----CC
Q 003177 603 QWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTF-------TGHSTTVMSLDFHPSKEDLLCSCDN-----NS 668 (842)
Q Consensus 603 ~~I~~l~fspdg~~Latgs~--Dg~I~IWDl~t~~~~i~~~-------~~h~~~V~sl~fspdg~~llasgs~-----Dg 668 (842)
..+..|+++++++++++... ++.++||.++++. +..+ ..|...+.++++++++. ++++-.. +.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence 67999999999999888642 3436666665332 3322 23456799999999965 4444332 57
Q ss_pred cEEEEECCCCceeeEEeec-------CCeeEEEEeCCCCEEEEEE----cCCeEEEEECCCCeEEEEEeCCCCCEE-EEE
Q 003177 669 EIRYWSINNGSCAGVFKCQ-------SGATQMRFQPRLGRILAAA----IENYISILDVETQVCRLKLQGHKNQVH-SVC 736 (842)
Q Consensus 669 ~I~vwDl~t~~~i~~~~~~-------~~i~~v~~sp~g~~l~~~s----~dg~I~IwDl~t~~~~~~l~~h~~~V~-sl~ 736 (842)
.|.+||+.+++.+..+... ..+..++++++++.++++. .++.|.+||+.+++....+.+|..... ...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 8999999999887777643 2358899998767766655 468999999998887776655432111 133
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECC---CCe-----
Q 003177 737 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT---ENK----- 806 (842)
Q Consensus 737 ~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg-~I~Iwdl~---~~~----- 806 (842)
+.++|..+.+.+ ++.++.|. ..+..++|+|+++.|+++...+ .|+.++.. .+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp CEETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred eeECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 445666666555 77665553 1356799999999999988776 66666532 111
Q ss_pred ---EEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 807 ---TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 807 ---~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.+...++......++++++|.++++...++.|.+||
T Consensus 237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 012223445677899999999999888889999986
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.07 E-value=4.3e-09 Score=121.67 Aligned_cols=257 Identities=9% Similarity=0.014 Sum_probs=177.9
Q ss_pred EEEEECCCcEEEEecCCCeEEEEecc---------------------------------CC------CCeEEEEEcC---
Q 003177 575 LATGGHDKKAVLWCTESFTVKSTLEE---------------------------------HT------QWITDVRFSP--- 612 (842)
Q Consensus 575 Lasgs~Dg~I~vwd~~t~~~~~~l~~---------------------------------h~------~~I~~l~fsp--- 612 (842)
+.+|+..|.|+|+-+.+++.+..+.. +. +....+..|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 66788889999998888887766520 01 1122344444
Q ss_pred --CCCEEEEEeC-CCeEEEEEcCCCCceeeEee-cCccceEEEEE-c-CCCCcEEEEE-----------------eCCCc
Q 003177 613 --SLSRLATSSA-DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDF-H-PSKEDLLCSC-----------------DNNSE 669 (842)
Q Consensus 613 --dg~~Latgs~-Dg~I~IWDl~t~~~~i~~~~-~h~~~V~sl~f-s-pdg~~llasg-----------------s~Dg~ 669 (842)
||++++++.. +..|.+.|+++.+. ...+. .....+..+++ . |+++++++++ ..++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~-~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKC-DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEE-EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceE-eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 7888877665 55799999998653 44332 12345788887 4 8988877664 33568
Q ss_pred EEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCC--------------------------------------eE
Q 003177 670 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--------------------------------------YI 711 (842)
Q Consensus 670 I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg--------------------------------------~I 711 (842)
+.++|..+.+.+..+........++++|+++++++++.+. .|
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999999999999998766778899999999999988653 36
Q ss_pred EEEECCC--CeE-EEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC--------CceeEEEeecCCCceEE
Q 003177 712 SILDVET--QVC-RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS--------KGECIHELSCTGNKFHS 778 (842)
Q Consensus 712 ~IwDl~t--~~~-~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~--------~~~~i~~~~~~~~~I~s 778 (842)
.|.|.++ ++. +..+.. .....++.++|||+++++++ +++|.++|+.+.. ....+..-..-+.....
T Consensus 257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h 335 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 335 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence 7777776 433 333332 23457899999999999988 8899999998541 01122222234567889
Q ss_pred EEEeCCCCEEEEEE-cCCeEEEEECCC----------CeEE-EEccCCCCe-----eEEEEeCCCCEEEEEeC
Q 003177 779 CVFHPTFPSLLVIG-CYETLELWNMTE----------NKTL-TLSAHDKLV-----SSLAASTVNGMVASASH 834 (842)
Q Consensus 779 v~~spdg~~L~sgs-~dg~I~Iwdl~~----------~~~~-~~~~h~~~V-----~sla~spdg~~Lasgs~ 834 (842)
++|+++| ++++.. -++.|.+||+.. ...+ ++..|-.+- .++.++|||++|+++..
T Consensus 336 ~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 336 TAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9999999 665554 477999999976 4444 444443321 22355799999998763
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.04 E-value=8e-08 Score=107.63 Aligned_cols=222 Identities=9% Similarity=-0.018 Sum_probs=149.6
Q ss_pred EEc--CCCCEEEEE-eCCCeEEEEEcCCCC---ceeeEee------c-CccceEEEEEcCCCCcEEEEEeCC------Cc
Q 003177 609 RFS--PSLSRLATS-SADRTVRVWDTENPD---YSLRTFT------G-HSTTVMSLDFHPSKEDLLCSCDNN------SE 669 (842)
Q Consensus 609 ~fs--pdg~~Latg-s~Dg~I~IWDl~t~~---~~i~~~~------~-h~~~V~sl~fspdg~~llasgs~D------g~ 669 (842)
.++ .+.++|++. ..+++|+|+|+.+.. ...+++. . ....-..+.+.|+| +++++..+ +.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCe
Confidence 346 777777654 457899999996431 1233331 0 11244567888998 55566555 78
Q ss_pred EEEEECCCCceeeEEeecCC----eeEEEEeCCCCEEEEEE-------------------cCCeEEEEECCCCeEEEEEe
Q 003177 670 IRYWSINNGSCAGVFKCQSG----ATQMRFQPRLGRILAAA-------------------IENYISILDVETQVCRLKLQ 726 (842)
Q Consensus 670 I~vwDl~t~~~i~~~~~~~~----i~~v~~sp~g~~l~~~s-------------------~dg~I~IwDl~t~~~~~~l~ 726 (842)
|.++|..+.+.+..+..... ...+.|+|+++.+++.. .++.|.+||+.+++.+.++.
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 99999999999998874322 34588899999888774 36899999999998887776
Q ss_pred CCC--CCEEEEEE--cCCCCEEEEEeC-------CeEEEEEcCCCCCceeEEEe--ec----------------CCCceE
Q 003177 727 GHK--NQVHSVCW--NTSGEYLASVSD-------ELVRVWSIGSGSKGECIHEL--SC----------------TGNKFH 777 (842)
Q Consensus 727 ~h~--~~V~sl~~--spdg~~LasgsD-------g~I~IwDl~s~~~~~~i~~~--~~----------------~~~~I~ 777 (842)
... .....+.| +|++++++++.. ++|.+|....+. ...+..+ .. ......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCcee
Confidence 421 23445655 999998776543 477777665431 1222211 11 024567
Q ss_pred EEEEeCCCCEEEEEEcC-CeEEEEECCC---CeEEEEccCC---------------CCeeEEEEeCCCCEEEEEe
Q 003177 778 SCVFHPTFPSLLVIGCY-ETLELWNMTE---NKTLTLSAHD---------------KLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 778 sv~~spdg~~L~sgs~d-g~I~Iwdl~~---~~~~~~~~h~---------------~~V~sla~spdg~~Lasgs 833 (842)
.+.+++|+++|+++... +.|.+||+.. .+++....-. +....++++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 89999999999998874 5999999863 2444222111 1368899999999998887
No 238
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.04 E-value=3e-08 Score=118.81 Aligned_cols=264 Identities=13% Similarity=0.082 Sum_probs=171.8
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEeccCCCC----------e-EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeE
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~----------I-~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~ 640 (842)
+..|++++.++.|+.+|..+++.+..+...... + ..+.+ ++..|++++.|+.|..+|..+++.....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 457777888899999999999998777533211 0 11222 3567888889999999999998764333
Q ss_pred eecCc---cceEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCceeeEEeecC--C--------------------
Q 003177 641 FTGHS---TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQS--G-------------------- 689 (842)
Q Consensus 641 ~~~h~---~~V~s-l~fspdg~~llasgs-----~Dg~I~vwDl~t~~~i~~~~~~~--~-------------------- 689 (842)
..... ..+.+ ..+. +..+++.++ .+|.|+.+|.++|+.+..+.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 22111 11111 1111 233443332 25899999999999998876311 0
Q ss_pred ----------eeEEEEeCCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEeC--CC-------CC
Q 003177 690 ----------ATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------NQ 731 (842)
Q Consensus 690 ----------i~~v~~sp~g~~l~~~s~dg-------------------~I~IwDl~t~~~~~~l~~--h~-------~~ 731 (842)
...+++.++.+.+++++.++ .|..+|.++++.+..+.. |. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 12468888888888887765 499999999999988764 22 23
Q ss_pred EEEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC------------Cc--------------------
Q 003177 732 VHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG------------NK-------------------- 775 (842)
Q Consensus 732 V~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~------------~~-------------------- 775 (842)
+....+..+|+ +|+.++ +|.++++|..+++ .+....... .+
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~ 378 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK---LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC---EeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence 33333334665 567777 9999999999984 332211110 00
Q ss_pred ----eEEEEEeCCCCEEEEEE------------------------------------cCCeEEEEECCCCeEEEEccCCC
Q 003177 776 ----FHSCVFHPTFPSLLVIG------------------------------------CYETLELWNMTENKTLTLSAHDK 815 (842)
Q Consensus 776 ----I~sv~~spdg~~L~sgs------------------------------------~dg~I~Iwdl~~~~~~~~~~h~~ 815 (842)
-..++++|+...+++.. .++.|+.||+.+++.+-...+..
T Consensus 379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (668)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence 11267888777666532 23789999999999884333334
Q ss_pred CeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 816 LVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 816 ~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.+....+...+.+|++++.||.|++||
T Consensus 459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 459 HWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCcCceeEeCCCEEEEECCcccchhhh
Confidence 444445556788899999999999886
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.01 E-value=1e-08 Score=118.56 Aligned_cols=234 Identities=12% Similarity=0.121 Sum_probs=168.2
Q ss_pred CCCEEEEEECC-CcEEEEecCCCeEEEEeccC-CCCeEEEEE-c-CCCCEEEEEe------------------CCCeEEE
Q 003177 571 DGKLLATGGHD-KKAVLWCTESFTVKSTLEEH-TQWITDVRF-S-PSLSRLATSS------------------ADRTVRV 628 (842)
Q Consensus 571 dg~~Lasgs~D-g~I~vwd~~t~~~~~~l~~h-~~~I~~l~f-s-pdg~~Latgs------------------~Dg~I~I 628 (842)
||++|++...+ +.|.+.|+++.++...+.-- ...+..+++ . |+++++++++ .++.|.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 88888877664 56999999999988855322 245889998 5 8999999885 3468999
Q ss_pred EEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC-------------------------------------CcEE
Q 003177 629 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------------------------------SEIR 671 (842)
Q Consensus 629 WDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D-------------------------------------g~I~ 671 (842)
+|.++.+.......+. ....++++|+|+++++++... +.|.
T Consensus 180 ID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 9999865433333322 346678999998877776433 2488
Q ss_pred EEECCC--Cce-eeEEeecCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCe------------EEEEEeCCCCCEEEE
Q 003177 672 YWSINN--GSC-AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQV------------CRLKLQGHKNQVHSV 735 (842)
Q Consensus 672 vwDl~t--~~~-i~~~~~~~~i~~v~~sp~g~~l~~~s~-dg~I~IwDl~t~~------------~~~~l~~h~~~V~sl 735 (842)
|.|..+ ++. +..+.......++.++|||+++++++. ++.|.++|+.+.+ .+..+. -......+
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~ 336 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT 336 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence 888887 555 667777778899999999999888775 6899999999653 333333 34567889
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCCC-------CCceeEEEeecCCCceE-----EEEEeCCCCEEEEEEcCC--eE--
Q 003177 736 CWNTSGEYLASVS--DELVRVWSIGSG-------SKGECIHELSCTGNKFH-----SCVFHPTFPSLLVIGCYE--TL-- 797 (842)
Q Consensus 736 ~~spdg~~Lasgs--Dg~I~IwDl~s~-------~~~~~i~~~~~~~~~I~-----sv~~spdg~~L~sgs~dg--~I-- 797 (842)
+|+++| ++++.. |+.|.+||+.+. .....+..+..+..+-. .+.++|||++|++...-. .+
T Consensus 337 aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred EECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 999999 666655 999999999762 11356777776654321 124589999999987532 34
Q ss_pred ---------EEEECCCCeEE
Q 003177 798 ---------ELWNMTENKTL 808 (842)
Q Consensus 798 ---------~Iwdl~~~~~~ 808 (842)
.++|+.+++..
T Consensus 416 ~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CCSSCCEEEEEEECSSSSCE
T ss_pred CCCCCCCcceEEEcCCCcEE
Confidence 88999766543
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.00 E-value=4.4e-07 Score=95.19 Aligned_cols=222 Identities=7% Similarity=0.007 Sum_probs=143.7
Q ss_pred CEEEEEeCCCeEEEEEcCCCCce----eeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCC
Q 003177 615 SRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSG 689 (842)
Q Consensus 615 ~~Latgs~Dg~I~IWDl~t~~~~----i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~ 689 (842)
.+|+.+.. +.|+.++++..... ...+......+.+++|++++..++++...++.|.++++........+.. ...
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 35555553 47888988764321 1112222345789999998887887877789999999986654433332 246
Q ss_pred eeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C---CeEEEEEcCCCCCce
Q 003177 690 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGE 764 (842)
Q Consensus 690 i~~v~~sp~g~~l~~~s~-dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D---g~I~IwDl~s~~~~~ 764 (842)
...++++++++.++++.. .+.|.++++..................++++|++..|+.+. . +.|.++++..... .
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E
Confidence 789999998777777665 57999999875432222322235678999999766655555 3 5888888764321 2
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEe-CCCcEEEcC
Q 003177 765 CIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 842 (842)
Q Consensus 765 ~i~~~~~~~~~I~sv~~spdg~~L~sgs~d-g~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs-~DG~V~IWd 842 (842)
.+ ..........+++++++..|+++... +.|.++|+.......+.........+++. +..|+.+. ..+.|.++|
T Consensus 160 ~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 160 IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEe
Confidence 22 11233467889999998888777764 59999999876554433333445677764 44444444 456776653
No 241
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.97 E-value=2.7e-10 Score=126.56 Aligned_cols=201 Identities=9% Similarity=-0.002 Sum_probs=111.1
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCC--e
Q 003177 613 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--A 690 (842)
Q Consensus 613 dg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~--i 690 (842)
++..|++++.||.|+.||..+++. +..+.. ..+.+..+..++. ++++++.|+.|+.||..+++.+..+..... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~-~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI-KWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE-EEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-EEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 577899999999999999998875 444443 4455555555554 555677899999999999988766543211 1
Q ss_pred e-EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE
Q 003177 691 T-QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 768 (842)
Q Consensus 691 ~-~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~ 768 (842)
. ...+ ..++.+++++.++.|+.||.++++.+..+..+. .+.++|++..|++++ |+.|+.||.++++. +..
T Consensus 84 ~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~---~W~ 155 (369)
T 2hz6_A 84 QASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL---RWN 155 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSC---CCE
T ss_pred ccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCE---EEe
Confidence 1 1111 135678888889999999999999888776543 234566777788777 89999999998843 222
Q ss_pred eecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeE-EEEeCCCC
Q 003177 769 LSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSS-LAASTVNG 827 (842)
Q Consensus 769 ~~~~~~~I~sv~~spdg---~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V~s-la~spdg~ 827 (842)
+... .....++..+. ..+++++.++.|+.||..+++.+.......++.. ..+++++.
T Consensus 156 ~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 156 ATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp EEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred Eecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 2111 11222333332 5688899999999999999998844444555543 34445553
No 242
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.95 E-value=1.4e-07 Score=110.83 Aligned_cols=263 Identities=11% Similarity=0.098 Sum_probs=166.6
Q ss_pred CCEEEEEEC-CCcEEEEec-CCCeEEEEeccCCC-C----------eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003177 572 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQ-W----------ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 638 (842)
Q Consensus 572 g~~Lasgs~-Dg~I~vwd~-~t~~~~~~l~~h~~-~----------I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i 638 (842)
+..|++++. ++.|+.+|. .+++.+-.+..... . ...+++ ++..|++++.|+.|..+|..+++...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 446666777 899999999 89998877643221 0 011222 35678888899999999999887533
Q ss_pred eEee-cCc--cceE-EEEEcCCCCcEEEEEeC-----CCcEEEEECCCCceeeEEeecCCe-------------------
Q 003177 639 RTFT-GHS--TTVM-SLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQSGA------------------- 690 (842)
Q Consensus 639 ~~~~-~h~--~~V~-sl~fspdg~~llasgs~-----Dg~I~vwDl~t~~~i~~~~~~~~i------------------- 690 (842)
..-. .+. ..+. ..... +..+++.+.. ++.|+.+|.++++.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 3222 111 0111 11111 2334433332 789999999999999887753321
Q ss_pred --------------------eEEEEeCCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEeCC--C---
Q 003177 691 --------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGH--K--- 729 (842)
Q Consensus 691 --------------------~~v~~sp~g~~l~~~s~d----------------g~I~IwDl~t~~~~~~l~~h--~--- 729 (842)
..+++.++.+.++++..+ +.|..+|.++++.+..+... .
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 235677777788777642 35999999999998887632 1
Q ss_pred -----CCEEEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-------------Cce-----------
Q 003177 730 -----NQVHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NKF----------- 776 (842)
Q Consensus 730 -----~~V~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-------------~~I----------- 776 (842)
.++. +....+|+ +++.++ +|.++++|..++ +.+..+.... .++
T Consensus 298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG---~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 373 (571)
T 2ad6_A 298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENG---NLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH 373 (571)
T ss_dssp CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTC---CEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCC---CEEeeecccCCccccccccccCCceecccccCCCCCC
Confidence 1221 22224674 566666 889999999988 3443332111 111
Q ss_pred ---------------EEEEEeCCCCEEEEEEc-------------------------------------CCeEEEEECCC
Q 003177 777 ---------------HSCVFHPTFPSLLVIGC-------------------------------------YETLELWNMTE 804 (842)
Q Consensus 777 ---------------~sv~~spdg~~L~sgs~-------------------------------------dg~I~Iwdl~~ 804 (842)
..++++|+...|++.+. ++.|+.||+.+
T Consensus 374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT 453 (571)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence 23578888877777643 46899999999
Q ss_pred CeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 805 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 805 ~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
++.+....+...+....+...+.+++.++.||.|++||
T Consensus 454 G~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 454 GKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp CCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred CCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 99874333333343333344566777789999999876
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.94 E-value=2.2e-07 Score=97.97 Aligned_cols=204 Identities=11% Similarity=0.022 Sum_probs=143.6
Q ss_pred eEEEEeccCCC--CeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCceeeEee-cCccceEEEEEcCCCCcEEEEEeCC
Q 003177 593 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN 667 (842)
Q Consensus 593 ~~~~~l~~h~~--~I~~l~fspdg~~Latgs~--Dg~I~IWDl~t~~~~i~~~~-~h~~~V~sl~fspdg~~llasgs~D 667 (842)
+.+.++. |.. ....+.|++++.++++.+. ++.|+++|+.+++. +..+. +.......+++. ++.++++.-.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v-~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV-ENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE-EEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 4555663 443 4689999998654444443 57999999999775 44432 222233455555 56677777789
Q ss_pred CcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-----CCEEEEEEcCCCC
Q 003177 668 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGE 742 (842)
Q Consensus 668 g~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~-----~~V~sl~~spdg~ 742 (842)
+.|.++|..+.+.+..+... .-....++++++.++++..++.|.++|..+.+.+..+.-.. ..+..+.|. ++.
T Consensus 86 ~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 99999999999999988765 12234466788888887778999999999988877766321 246788888 775
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 003177 743 YLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 805 (842)
Q Consensus 743 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------------~~~I~sv~~spdg~~L~sgs~-dg~I~Iwdl~~~ 805 (842)
+++... ++.|.+.|..++ +.+..+... ......++|+|+++.+++++. .+.|++.++...
T Consensus 164 lyvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 555554 789999999998 455555431 135689999999987777764 568888887543
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.93 E-value=2.7e-06 Score=103.73 Aligned_cols=266 Identities=7% Similarity=0.038 Sum_probs=181.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEecc-------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 632 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~-------h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 632 (842)
...|.++...++|.+.+ |+.+ -|.+||..++........ ....|.++...++|. |..|+.++-|.+|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 45699999998887554 5555 589999887765543221 235799999998886 4556677778999876
Q ss_pred CCCceeeEeec-------CccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe---------ecCCeeEEEEe
Q 003177 633 NPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------CQSGATQMRFQ 696 (842)
Q Consensus 633 t~~~~i~~~~~-------h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---------~~~~i~~v~~s 696 (842)
+... ..+.. ....|.++...++|. |..|+.++-|..||..+++...... ....|.++...
T Consensus 339 ~~~~--~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 339 RNRF--KNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp GGSS--EEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred cccc--eEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence 5442 22211 235699999888765 4457777789999988776543321 12458888888
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEEEEEe----CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee--
Q 003177 697 PRLGRILAAAIENYISILDVETQVCRLKLQ----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-- 770 (842)
Q Consensus 697 p~g~~l~~~s~dg~I~IwDl~t~~~~~~l~----~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~-- 770 (842)
+++..|.+|+.++.|.+||..+++...... .....|.++..+++|.+.+++. +.|.+||..++ .......
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~---~~~~~~~~~ 490 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR---SFTTIEKEK 490 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT---EEEECCBCT
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC---eEEEccccc
Confidence 887757778888889999998876443321 1345799999999998777665 55889998765 2222111
Q ss_pred ----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc-------cCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 003177 771 ----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-------AHDKLVSSLAASTVNGMVASASHDKCVK 839 (842)
Q Consensus 771 ----~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~-------~h~~~V~sla~spdg~~Lasgs~DG~V~ 839 (842)
.....|.++...+++. |.+++. +.|.+||..+++. .+. .....|.++...++|.+.++. .+| |.
T Consensus 491 ~~~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G-l~ 565 (795)
T 4a2l_A 491 DGTPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-REG-FY 565 (795)
T ss_dssp TCCBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SSC-EE
T ss_pred cccccCCceEEEEEECCCCC-EEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CCC-ce
Confidence 1236788999998887 555555 5688999887766 332 124578999998888866644 345 44
Q ss_pred Ec
Q 003177 840 IW 841 (842)
Q Consensus 840 IW 841 (842)
.|
T Consensus 566 ~~ 567 (795)
T 4a2l_A 566 CF 567 (795)
T ss_dssp EE
T ss_pred eE
Confidence 44
No 245
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.91 E-value=2.2e-06 Score=104.64 Aligned_cols=267 Identities=7% Similarity=0.083 Sum_probs=178.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEecc-------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003177 559 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDT 631 (842)
Q Consensus 559 H~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~-------h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 631 (842)
+...|.++...+++.+. .|+.++-|.+||..+++....... ....|.++...+++.+.+ |+.+ -|.+||.
T Consensus 213 ~~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~ 289 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHE 289 (795)
T ss_dssp -CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEET
T ss_pred CCCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcC
Confidence 34678999988887654 455555599999887765543222 235699999998887555 4455 4889998
Q ss_pred CCCCceeeEee--------cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-------ecCCeeEEEEe
Q 003177 632 ENPDYSLRTFT--------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGATQMRFQ 696 (842)
Q Consensus 632 ~t~~~~i~~~~--------~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-------~~~~i~~v~~s 696 (842)
.+.. ...+. -....|.++...++|. +..|+.++-|.+|+..+........ ....|.++...
T Consensus 290 ~~~~--~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 290 GTDS--FASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp TTTE--EEEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred CCCe--EEEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 7644 22222 1235799999998876 4456777789999876554322211 12348888888
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEEEEEeC--------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE
Q 003177 697 PRLGRILAAAIENYISILDVETQVCRLKLQG--------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 767 (842)
Q Consensus 697 p~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~--------h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~ 767 (842)
+++. +.+|+.++.|..||..++........ ....|.+++.++++.+|.+|+ ++.|.+||..++. . .
T Consensus 366 ~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~---~-~ 440 (795)
T 4a2l_A 366 KDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ---V-E 440 (795)
T ss_dssp TTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC---E-E
T ss_pred CCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc---E-E
Confidence 7755 66678888899999987654432211 235799999999999444555 6789999988762 2 2
Q ss_pred Eee-----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc-------CCCCeeEEEEeCCCCEEEEEeCC
Q 003177 768 ELS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHD 835 (842)
Q Consensus 768 ~~~-----~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~-------h~~~V~sla~spdg~~Lasgs~D 835 (842)
.+. .....|.++...+++. |.+++. +.|.+||..+++...+.. ....|.++...++|.+.+... +
T Consensus 441 ~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~ 517 (795)
T 4a2l_A 441 NFNQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E 517 (795)
T ss_dssp EECTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S
T ss_pred EeecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C
Confidence 222 2345788999888887 555555 569999998887664432 236789999998888766544 5
Q ss_pred CcEEEc
Q 003177 836 KCVKIW 841 (842)
Q Consensus 836 G~V~IW 841 (842)
| |.+|
T Consensus 518 G-l~~~ 522 (795)
T 4a2l_A 518 G-LSVF 522 (795)
T ss_dssp C-EEEE
T ss_pred c-eEEE
Confidence 5 5444
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.89 E-value=1.1e-06 Score=94.90 Aligned_cols=234 Identities=10% Similarity=0.030 Sum_probs=147.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEec-c------------------CCCCeEEEEEcCCCCEEEEEe
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-E------------------HTQWITDVRFSPSLSRLATSS 621 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~-~------------------h~~~I~~l~fspdg~~Latgs 621 (842)
....+++|+++|++++++..++.|..||..+++...... . ....+.++++.++...|+++.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 345678999999878888889999999987654432110 0 113578999997333455555
Q ss_pred CCCeEEEEEcCCCCceeeEeec-----CccceEEEEEcC-CCCcEEEEEeC-----------------CCcEEEEECCCC
Q 003177 622 ADRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHP-SKEDLLCSCDN-----------------NSEIRYWSINNG 678 (842)
Q Consensus 622 ~Dg~I~IWDl~t~~~~i~~~~~-----h~~~V~sl~fsp-dg~~llasgs~-----------------Dg~I~vwDl~t~ 678 (842)
..+.|.++|..++. +..+.. .......+++.+ +|. ++++... ++.|..||..++
T Consensus 99 ~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 99 CYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp TTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred CCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 55668888876533 222211 113468899999 876 4444321 367999998877
Q ss_pred ceeeEEeecCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCC---eEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-----
Q 003177 679 SCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVSD----- 749 (842)
Q Consensus 679 ~~i~~~~~~~~i~~v~~sp~g~~l~~~s~-dg~I~IwDl~t~---~~~~~l~~h~~~V~sl~~spdg~~LasgsD----- 749 (842)
+.............++++++++.++++.. .+.|.+|++... ... .+....+ ...++++++|+++++...
T Consensus 176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence 65444443355678999999997777754 589999998742 211 1111223 788999999987776543
Q ss_pred ------CeEEEEEcCCCCCceeEEEeecCC----CceEEEEEeCCCCEEEEEE-cCCeEEEEECCCC
Q 003177 750 ------ELVRVWSIGSGSKGECIHELSCTG----NKFHSCVFHPTFPSLLVIG-CYETLELWNMTEN 805 (842)
Q Consensus 750 ------g~I~IwDl~s~~~~~~i~~~~~~~----~~I~sv~~spdg~~L~sgs-~dg~I~Iwdl~~~ 805 (842)
+.|.++|.. + +.+..+.... ..+..+++. ++ .|++++ ..+.|.++++...
T Consensus 254 ~~~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 254 MHGRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TTSCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEEC---
T ss_pred ccCCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEecccc
Confidence 467777753 3 4444444332 345666663 44 455554 4568888887643
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.87 E-value=3.1e-07 Score=108.23 Aligned_cols=265 Identities=9% Similarity=0.039 Sum_probs=166.0
Q ss_pred CCEEEEEEC-CCcEEEEec-CCCeEEEEeccCCCC-----------eEEEEEcCCCCE----EEEEeCCCeEEEEEcCCC
Q 003177 572 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQW-----------ITDVRFSPSLSR----LATSSADRTVRVWDTENP 634 (842)
Q Consensus 572 g~~Lasgs~-Dg~I~vwd~-~t~~~~~~l~~h~~~-----------I~~l~fspdg~~----Latgs~Dg~I~IWDl~t~ 634 (842)
+..|++++. ++.|+.+|. .+++.+-.+...... ...+++.|.+.. |++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446666777 889999999 899998776532210 123455443344 888889999999999998
Q ss_pred CceeeEeecC-c--cceEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCceeeEEeecCCe---------------
Q 003177 635 DYSLRTFTGH-S--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA--------------- 690 (842)
Q Consensus 635 ~~~i~~~~~h-~--~~V~s-l~fspdg~~llasgs-----~Dg~I~vwDl~t~~~i~~~~~~~~i--------------- 690 (842)
+.....-... . ..+.+ ..+. + ..+++.++ .++.|+.+|.++|+.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 7643322211 0 01111 1111 2 33443332 3799999999999999888754322
Q ss_pred ------------------------eEEEEeCCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEeCCCC
Q 003177 691 ------------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGHKN 730 (842)
Q Consensus 691 ------------------------~~v~~sp~g~~l~~~s~d----------------g~I~IwDl~t~~~~~~l~~h~~ 730 (842)
..+++.+..+.++++..+ +.|..+|.++++.+..+.....
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 135677788888887765 3899999999999888764221
Q ss_pred ----------CEEEEEEc-CCC---CEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------------CCce------
Q 003177 731 ----------QVHSVCWN-TSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKF------ 776 (842)
Q Consensus 731 ----------~V~sl~~s-pdg---~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------------~~~I------ 776 (842)
++. +... .+| ..++.++ +|.|+++|..+++ .+...... ..++
T Consensus 300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 375 (599)
T 1w6s_A 300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA---LVSANKLDDTVNVFKSVDLKTGQPVRDPEYG 375 (599)
T ss_dssp CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCCEEECGGGC
T ss_pred ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC---EeecccccCCcccccccccCCCceeeccccC
Confidence 121 2222 567 4566666 9999999999884 33332211 0111
Q ss_pred --------------------EEEEEeCCCCEEEEEE---------------------------------------cCCeE
Q 003177 777 --------------------HSCVFHPTFPSLLVIG---------------------------------------CYETL 797 (842)
Q Consensus 777 --------------------~sv~~spdg~~L~sgs---------------------------------------~dg~I 797 (842)
..++++|+...+++.. ..+.|
T Consensus 376 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l 455 (599)
T 1w6s_A 376 TRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQI 455 (599)
T ss_dssp CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEE
T ss_pred CCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeE
Confidence 2356777666555432 23689
Q ss_pred EEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 798 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 798 ~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
..||+.+++.+-...+..++..-.+...+.+|+.++.||.|+.||
T Consensus 456 ~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 456 KAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp EEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred EEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence 999999998873332222222222233567777889999998875
No 248
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.85 E-value=2.1e-06 Score=92.19 Aligned_cols=233 Identities=9% Similarity=0.017 Sum_probs=145.2
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEe-CCC-c
Q 003177 592 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNS-E 669 (842)
Q Consensus 592 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs-~Dg-~ 669 (842)
.+.+..+... ....+++|+++++++++-..++.|..||.+.. . ...+ .....+..+++.+++. ++++.. .++ .
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~-~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~~ 96 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-Q-QIHA-TVEGKVSGLAFTSNGD-LVATGWNADSIP 96 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-E-EEEE-ECSSEEEEEEECTTSC-EEEEEECTTSCE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-e-EEEE-eCCCCceeEEEcCCCc-EEEEeccCCcce
Confidence 3455555433 56789999999987777667899999998753 2 2222 2345688999999987 444443 222 4
Q ss_pred EEEEECCCCceeeEEeec--CCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeE-EEEEe---------CCCCCEEEEE
Q 003177 670 IRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQ---------GHKNQVHSVC 736 (842)
Q Consensus 670 I~vwDl~t~~~i~~~~~~--~~i~~v~~sp~g~~l~~~s-~dg~I~IwDl~t~~~-~~~l~---------~h~~~V~sl~ 736 (842)
|..+|..+++........ .....++..++ ..++++. .++.|+++|..++.. +.... ..-.....+
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 777888877765443321 22344454444 4555555 478999999886532 22111 111234555
Q ss_pred EcCCCCEEEEEe--CCeEEEEEcCC-CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE---E
Q 003177 737 WNTSGEYLASVS--DELVRVWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT---L 810 (842)
Q Consensus 737 ~spdg~~Lasgs--Dg~I~IwDl~s-~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~---~ 810 (842)
++++.+|+.+. .+.|.+|++.. +.. .....+.. ......++++++|..+++....+.|.+||.. ++... +
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~ 250 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA 250 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence 78888777766 77999999875 221 11111111 1345678999999765555556799999976 55532 2
Q ss_pred ccCCCCeeEEEEe---CCCCEEEEEeCC
Q 003177 811 SAHDKLVSSLAAS---TVNGMVASASHD 835 (842)
Q Consensus 811 ~~h~~~V~sla~s---pdg~~Lasgs~D 835 (842)
......+++++|. ++++.|+.++..
T Consensus 251 ~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 251 EQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccccCCceEEEEecccCCCCEEEEECCC
Confidence 2233568999998 888777666543
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.83 E-value=1.3e-06 Score=94.41 Aligned_cols=232 Identities=9% Similarity=0.006 Sum_probs=145.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeec--------------------CccceEEEEEcCCCCcEEE
Q 003177 603 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--------------------HSTTVMSLDFHPSKEDLLC 662 (842)
Q Consensus 603 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~--------------------h~~~V~sl~fspdg~~lla 662 (842)
....+++|.+++++++++..++.|..||..++.. ..+.. ....+..+++.+++..++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~- 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF--VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY- 95 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE--EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce--EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-
Confidence 3467788999998888888899999998876442 22211 113578899997334455
Q ss_pred EEeCCCcEEEEECCCCceeeEEee-----cCCeeEEEEeC-CCCEEEEEEc-----------------CCeEEEEECCCC
Q 003177 663 SCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQP-RLGRILAAAI-----------------ENYISILDVETQ 719 (842)
Q Consensus 663 sgs~Dg~I~vwDl~t~~~i~~~~~-----~~~i~~v~~sp-~g~~l~~~s~-----------------dg~I~IwDl~t~ 719 (842)
.++..+.|..+|..+++....... ......+++.+ ++..+++... ++.|..||..++
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 344445588888775543222111 12467899999 8765555322 367999998877
Q ss_pred eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc----
Q 003177 720 VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---- 793 (842)
Q Consensus 720 ~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~---- 793 (842)
+....... ......|+|++++++|+++. .+.|.+|++....... ...+..... ...++++++|..+++...
T Consensus 176 ~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 176 ETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp EEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred EEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence 64433221 22346799999999776665 6799999987532111 111111223 788999999985555444
Q ss_pred ------CCeEEEEECCCCeEE-EEccC----CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 794 ------YETLELWNMTENKTL-TLSAH----DKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 794 ------dg~I~Iwdl~~~~~~-~~~~h----~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.+.|..+|.. ++.+ .+... ...++++++ .++.++++...++.|.+++
T Consensus 253 ~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp STTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred cccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 3578888875 5544 33322 245777776 3566666655667777653
No 250
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=5.3e-06 Score=100.99 Aligned_cols=274 Identities=8% Similarity=-0.060 Sum_probs=176.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEec--------------cCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------------EHTQWITDVRFSPSLSRLATSSADRT 625 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~--------------~h~~~I~~l~fspdg~~Latgs~Dg~ 625 (842)
...|.++...++|. |..|+..+-|.++|..+........ -....|.++...+++. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 45699999988885 5556665678999987765432211 1345799999988876 555666777
Q ss_pred EEEEEcCCCCceeeEe--------ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe----ecCCeeEE
Q 003177 626 VRVWDTENPDYSLRTF--------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQM 693 (842)
Q Consensus 626 I~IWDl~t~~~~i~~~--------~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~----~~~~i~~v 693 (842)
|..|+..+........ ......|.+++..+++. |..|+.++-|.+||..++....... ....|.++
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 8899887654321111 01235689999888765 3356656679999987654332111 12457788
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee-
Q 003177 694 RFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS- 770 (842)
Q Consensus 694 ~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~--~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~- 770 (842)
...+++. |.+++.++.|..||..+++...... .....|.++...+++.+.++.. +.|.+||..++.. ..+....
T Consensus 413 ~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~-~~~~~~~~ 489 (781)
T 3v9f_A 413 LKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKV-IHHYDTSN 489 (781)
T ss_dssp EECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSC-CEEECTTT
T ss_pred EECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeE-EecccCcc
Confidence 7776654 5567777889999998775443221 1346799999988887666544 6799999877532 1111111
Q ss_pred --cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc----CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 771 --CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA----HDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 771 --~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~----h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.....|.++...++|. |.+++.++-|..||..+++...+.. ....|.++...++|.+.++. .+|.|..||
T Consensus 490 ~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d 565 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPS 565 (781)
T ss_dssp SSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred cccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence 1136788999998887 6666665558889988877665432 23568899988888866654 467546664
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.80 E-value=7.2e-07 Score=93.94 Aligned_cols=186 Identities=10% Similarity=0.007 Sum_probs=128.9
Q ss_pred ceEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEE
Q 003177 647 TVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL 723 (842)
Q Consensus 647 ~V~sl~fspdg~~llasgs~--Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~-dg~I~IwDl~t~~~~~ 723 (842)
....+.|++++ .++++.+. ++.|.++|+.+++.+..+..........+..+++.++++.. ++.+.++|..+.+.+.
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEE
Confidence 46799999985 45555543 67999999999999998876554443334444667777665 6899999999999988
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-----CceEEEEEeCCCCEEEEEE-cCCe
Q 003177 724 KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTFPSLLVIG-CYET 796 (842)
Q Consensus 724 ~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-----~~I~sv~~spdg~~L~sgs-~dg~ 796 (842)
++...... ...+++||..++++. ++.|.++|..+. +.+..+.... ..++.+.|. ++ .|++.. .++.
T Consensus 101 ~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~---~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~ 173 (266)
T 2iwa_A 101 NFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTF---KLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDC 173 (266)
T ss_dssp EEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSE
T ss_pred EEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCC---cEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCe
Confidence 88633111 233556777777666 789999999887 4444443221 235677887 66 566655 4679
Q ss_pred EEEEECCCCeEEEEccC--------------CCCeeEEEEeCCCC-EEEEEeCCCcEEE
Q 003177 797 LELWNMTENKTLTLSAH--------------DKLVSSLAASTVNG-MVASASHDKCVKI 840 (842)
Q Consensus 797 I~Iwdl~~~~~~~~~~h--------------~~~V~sla~spdg~-~Lasgs~DG~V~I 840 (842)
|.+.|..+++++....- ....+.|+|+|+++ +++++...+.|.+
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 99999999998732211 13568999999986 4555556666654
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.77 E-value=6.5e-07 Score=107.22 Aligned_cols=255 Identities=13% Similarity=0.137 Sum_probs=159.4
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEeccCC----CCeEE-EEEcCCCCEEEEEeC------CCeEEEEEcCCCCceeeE
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~----~~I~~-l~fspdg~~Latgs~------Dg~I~IWDl~t~~~~i~~ 640 (842)
+..|++++.|+.|+.+|..+++.+..+.... ..+.+ ..+. ++ .+++++. +|.|+.||..+++.....
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4578888899999999999999987765421 11111 1111 33 5555543 589999999988753332
Q ss_pred eec--Cc----------------------------cceEEEEEcCCCCcEEEEEeCCC-------------------cEE
Q 003177 641 FTG--HS----------------------------TTVMSLDFHPSKEDLLCSCDNNS-------------------EIR 671 (842)
Q Consensus 641 ~~~--h~----------------------------~~V~sl~fspdg~~llasgs~Dg-------------------~I~ 671 (842)
... .. .....+++.++.+ +++.+..++ .|.
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 211 00 0112467777766 555665554 499
Q ss_pred EEECCCCceeeEEeec----------CCeeEEEEeCCCC---EEEEEEcCCeEEEEECCCCeEEEEEeCCCC--------
Q 003177 672 YWSINNGSCAGVFKCQ----------SGATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHKN-------- 730 (842)
Q Consensus 672 vwDl~t~~~i~~~~~~----------~~i~~v~~sp~g~---~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~-------- 730 (842)
.+|.++++.+..+... .......+..+++ .+++++.+|.++++|.++++.+..+.....
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 9999999999888752 1222223333554 578888999999999999988854432210
Q ss_pred ----CE------------------------EEEEEcCCCCEEEEE-----------------------------------
Q 003177 731 ----QV------------------------HSVCWNTSGEYLASV----------------------------------- 747 (842)
Q Consensus 731 ----~V------------------------~sl~~spdg~~Lasg----------------------------------- 747 (842)
++ ..++++|+..++++.
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 00 125777776665541
Q ss_pred -e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCe-eEEEEe
Q 003177 748 -S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV-SSLAAS 823 (842)
Q Consensus 748 -s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V-~sla~s 823 (842)
. ++.|+.||+.++ +.+...... .......+...+..+++++.|+.|++||.++++.+ .+....... .-+.+.
T Consensus 434 ~~~~g~l~A~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~ 509 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFE 509 (668)
T ss_dssp GGCEEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred CCccceEEEEeCCCC---cEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEE
Confidence 1 378999999988 555544432 23333445557778999999999999999999988 333222111 233445
Q ss_pred CCCC-EEEEEe
Q 003177 824 TVNG-MVASAS 833 (842)
Q Consensus 824 pdg~-~Lasgs 833 (842)
.+|+ +++.++
T Consensus 510 ~~G~~yva~~~ 520 (668)
T 1kv9_A 510 LAGRQYVAIMA 520 (668)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEe
Confidence 5676 444443
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.76 E-value=7.9e-07 Score=92.84 Aligned_cols=192 Identities=12% Similarity=0.114 Sum_probs=134.6
Q ss_pred eEEEEeccCCCC--eEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCC
Q 003177 593 TVKSTLEEHTQW--ITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 668 (842)
Q Consensus 593 ~~~~~l~~h~~~--I~~l~fspdg~~Latgs~Dg--~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 668 (842)
+.+.++ .|... ...|.|+ ++.++.+.+.+| .|+++|+.+++. +..+.-. .........++++.++++.-.++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT-LQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE-EEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 345556 34433 4789998 666666777666 899999999875 3433322 23333222334566777777799
Q ss_pred cEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-----CCEEEEEEcCCCCE
Q 003177 669 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEY 743 (842)
Q Consensus 669 ~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~-----~~V~sl~~spdg~~ 743 (842)
.+.+||..+.+.+..+.....- ..++++++.|+++..++.|.++|..+.+.+..+.... ..++.+.|. +|++
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECccCcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 9999999999999999875433 3444677888887778899999999988877765421 345567776 7765
Q ss_pred EEEEe-CCeEEEEEcCCCCCceeEEEeecC------------CCceEEEEEeCCCCEEEEEEcC
Q 003177 744 LASVS-DELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHPTFPSLLVIGCY 794 (842)
Q Consensus 744 Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~------------~~~I~sv~~spdg~~L~sgs~d 794 (842)
++... ++.|.+.|..++ +.+..+... ....+.++|+|+++.|++.+..
T Consensus 185 yan~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 55554 889999999998 555554432 2456899999999888887764
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.73 E-value=1.2e-05 Score=86.20 Aligned_cols=237 Identities=9% Similarity=0.022 Sum_probs=145.6
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-C-eEE
Q 003177 550 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R-TVR 627 (842)
Q Consensus 550 ~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-g-~I~ 627 (842)
.+.+..+..+ .....++|+++|+++++-..++.|..||.... ....+. ....+.++++.++++++++.... + .|.
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 3445555443 45789999999997777667899999997753 333332 33568999999999866655433 2 466
Q ss_pred EEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCce-eeEEe----------ecCCeeEEEEe
Q 003177 628 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK----------CQSGATQMRFQ 696 (842)
Q Consensus 628 IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~~----------~~~~i~~v~~s 696 (842)
.+|..++......-.........++..+. ..++++...++.|+++|...++. +.... .-.....+ +
T Consensus 99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 67766654321111112223345555444 44555555688999999876532 11100 00123444 7
Q ss_pred CCCCEEEEEEc-CCeEEEEECCC-CeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003177 697 PRLGRILAAAI-ENYISILDVET-QVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 771 (842)
Q Consensus 697 p~g~~l~~~s~-dg~I~IwDl~t-~~~--~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 771 (842)
++++.++++.. .+.|.+||+.. +.. ...+.. ......++++++|+++++.. .+.|.+||.. +.. ..+..+..
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~-~~~~~~~~ 252 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST-TIIAQAEQ 252 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE-EEEECGGG
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE-EEEeeccc
Confidence 88888777765 57999999874 321 111111 13456789999998766665 7789999865 311 11223333
Q ss_pred CCCceEEEEEe---CCCCEEEEEEcCC
Q 003177 772 TGNKFHSCVFH---PTFPSLLVIGCYE 795 (842)
Q Consensus 772 ~~~~I~sv~~s---pdg~~L~sgs~dg 795 (842)
.....++++|. +++..|++++..+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 34668999998 8988888877654
No 255
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.72 E-value=2e-07 Score=111.34 Aligned_cols=266 Identities=9% Similarity=0.041 Sum_probs=154.2
Q ss_pred EEEEcC-CCCEEEEEECCC-----------cEEEEecCCCeEE--EEe-ccCCCCeEEEEEcCCCCEEEEEeC-CCeEEE
Q 003177 565 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFTVK--STL-EEHTQWITDVRFSPSLSRLATSSA-DRTVRV 628 (842)
Q Consensus 565 sv~fSp-dg~~Lasgs~Dg-----------~I~vwd~~t~~~~--~~l-~~h~~~I~~l~fspdg~~Latgs~-Dg~I~I 628 (842)
++++.+ ++++++.|+.+. .+.+||..+.+.. ..+ ..+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888889887653 5889998876532 222 223344456788889999999984 458999
Q ss_pred EEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEe-CC-----CcEEEEECCCCceeeEE-----eecCCeeEEEEeC
Q 003177 629 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NN-----SEIRYWSINNGSCAGVF-----KCQSGATQMRFQP 697 (842)
Q Consensus 629 WDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs-~D-----g~I~vwDl~t~~~i~~~-----~~~~~i~~v~~sp 697 (842)
||..+.......-......-.++++.+++. +++.|+ .+ ..+.+||..+.+....- ..........+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 999875432111001111223455556766 555666 34 57999999887644320 0000000011223
Q ss_pred CCCEEEEEEcC---------CeEEEEECCCCeEEEEEeCCC---------CCEEEEEEcC-CCCEEEEEe-CC-------
Q 003177 698 RLGRILAAAIE---------NYISILDVETQVCRLKLQGHK---------NQVHSVCWNT-SGEYLASVS-DE------- 750 (842)
Q Consensus 698 ~g~~l~~~s~d---------g~I~IwDl~t~~~~~~l~~h~---------~~V~sl~~sp-dg~~Lasgs-Dg------- 750 (842)
++..++.++.+ ..+..||..+.........+. ..-.++.|.. +++++++|+ ++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 44444555444 457788988765433322121 1234555543 677777766 32
Q ss_pred ----eEEEEEcCCCCCceeEEEe--ecCCCc-eEEEEEeCCCCEEEEEEcC-----------CeEEEEECCCCeEEEEcc
Q 003177 751 ----LVRVWSIGSGSKGECIHEL--SCTGNK-FHSCVFHPTFPSLLVIGCY-----------ETLELWNMTENKTLTLSA 812 (842)
Q Consensus 751 ----~I~IwDl~s~~~~~~i~~~--~~~~~~-I~sv~~spdg~~L~sgs~d-----------g~I~Iwdl~~~~~~~~~~ 812 (842)
.|.+||..+. ...... ...... ..++++.++++.+++|+.+ ..+.+||..+.+...+..
T Consensus 429 ~~~~~v~~yd~~~~---~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 429 TNAHIITLGEPGTS---PNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp CCEEEEECCSTTSC---CEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred CcceEEEcCCCCCC---CeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC
Confidence 6778887665 222221 112222 3455677899988888854 468999998887654332
Q ss_pred ---CCCCeeEEEEeCCCCEEEEEeC
Q 003177 813 ---HDKLVSSLAASTVNGMVASASH 834 (842)
Q Consensus 813 ---h~~~V~sla~spdg~~Lasgs~ 834 (842)
......+..+.+++++++.|+.
T Consensus 506 ~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 506 NSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCccccccHhhcCCCcEEEecCCC
Confidence 1122334556789999999985
No 256
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.72 E-value=4.9e-06 Score=97.87 Aligned_cols=265 Identities=9% Similarity=0.021 Sum_probs=161.0
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEeccCCCCe---------EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEee
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI---------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 642 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I---------~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~ 642 (842)
+..|++++.++.|+.+|..+++.+-.+....... ..+++ .+..|++++.|+.|..+|..+++.....-.
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 3355556664459999999999987765332210 11222 356788888999999999999876433222
Q ss_pred cC-c--cceE-E-EEEcC--CCCcEEEEEe------CCCcEEEEECCCCceeeEEeecCC--------------------
Q 003177 643 GH-S--TTVM-S-LDFHP--SKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSG-------------------- 689 (842)
Q Consensus 643 ~h-~--~~V~-s-l~fsp--dg~~llasgs------~Dg~I~vwDl~t~~~i~~~~~~~~-------------------- 689 (842)
.. . ..+. . +.... ++..++++++ .++.|+.+|..+|+.+........
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 11 1 0111 1 11111 2232444544 378999999999998876653210
Q ss_pred ----------------------eeEEEEeCCCCEEEEEEc--------------------C----CeEEEEECCCCeEEE
Q 003177 690 ----------------------ATQMRFQPRLGRILAAAI--------------------E----NYISILDVETQVCRL 723 (842)
Q Consensus 690 ----------------------i~~v~~sp~g~~l~~~s~--------------------d----g~I~IwDl~t~~~~~ 723 (842)
-..+++.|..+.++++.. | +.|..+|.++++.+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 013566777788887773 2 589999999999998
Q ss_pred EEeC--CC--------CCEEEEEEc-CCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-------------Cc
Q 003177 724 KLQG--HK--------NQVHSVCWN-TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NK 775 (842)
Q Consensus 724 ~l~~--h~--------~~V~sl~~s-pdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-------------~~ 775 (842)
.+.. |. .++. +... .+|+ +|+.++ +|.|+++|..+++ .+..+.... .+
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p 381 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK---LQNAFPFVDNITWASHIDLKTGRP 381 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSSCCCSEEEECTTTCCE
T ss_pred EEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC---EecccccccCccccccccccCCCE
Confidence 8753 32 1121 2222 4674 667777 9999999999884 333322211 00
Q ss_pred --------------------------------eEEEEEeCCCCEEEEEE-------------------------------
Q 003177 776 --------------------------------FHSCVFHPTFPSLLVIG------------------------------- 792 (842)
Q Consensus 776 --------------------------------I~sv~~spdg~~L~sgs------------------------------- 792 (842)
...++++|+...+++..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~ 461 (582)
T 1flg_A 382 VEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMY 461 (582)
T ss_dssp EECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESC
T ss_pred eEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCC
Confidence 01345666665555543
Q ss_pred --cCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 793 --CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 793 --~dg~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.++.|+.||+.+++.+-...+...+..-.+...+.+++.++.||.|+.||
T Consensus 462 ~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 462 DDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp SSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred CCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence 25689999999999883222222332222233467788899999999876
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.71 E-value=1.8e-06 Score=101.42 Aligned_cols=254 Identities=10% Similarity=0.006 Sum_probs=154.5
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEeccCC----CCeEE-EEEcCCCCEEEEEeC------CCeEEEEEcCCCCceeeE
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~----~~I~~-l~fspdg~~Latgs~------Dg~I~IWDl~t~~~~i~~ 640 (842)
+..|++++.|+.|+.+|..+++.+..+.... ..+.+ .... + ..+++++. ++.|+.+|..+++...+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5578888899999999999999886654221 01211 1111 3 35566554 789999999988753322
Q ss_pred eecCcc------------------------------------ce-EEEEEcCCCCcEEEEEeC-----------C----C
Q 003177 641 FTGHST------------------------------------TV-MSLDFHPSKEDLLCSCDN-----------N----S 668 (842)
Q Consensus 641 ~~~h~~------------------------------------~V-~sl~fspdg~~llasgs~-----------D----g 668 (842)
...... .+ ..+++.++...+++..+. | +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 221100 00 135566665544433321 1 3
Q ss_pred cEEEEECCCCceeeEEeecC-------CeeE---EEEeCCCC---EEEEEEcCCeEEEEECCCCeEEEEEeCCC------
Q 003177 669 EIRYWSINNGSCAGVFKCQS-------GATQ---MRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK------ 729 (842)
Q Consensus 669 ~I~vwDl~t~~~i~~~~~~~-------~i~~---v~~sp~g~---~l~~~s~dg~I~IwDl~t~~~~~~l~~h~------ 729 (842)
.|..+|.++++.+..+.... .+.. +....+++ .+++++.+|.++++|.++++.+..+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 59999999999998886421 1111 22223553 46677788999999999999887765321
Q ss_pred -------CCE--------------------------EEEEEcCCCCEEEEEe----------------------------
Q 003177 730 -------NQV--------------------------HSVCWNTSGEYLASVS---------------------------- 748 (842)
Q Consensus 730 -------~~V--------------------------~sl~~spdg~~Lasgs---------------------------- 748 (842)
.++ ..++++|+..+|++..
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 111 2357788777666543
Q ss_pred ----------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCe-
Q 003177 749 ----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLV- 817 (842)
Q Consensus 749 ----------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~h~~~V- 817 (842)
++.|..||+.++ +.+..+... ..+....+...+..+++++.|+.|+.||.++++++........+
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~ 508 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI 508 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cCccccCCCCCCeEEEEECCCC---CEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcE
Confidence 367889999887 444444332 22222333445667888999999999999999988322222222
Q ss_pred -eEEEEeCCCCEEEE
Q 003177 818 -SSLAASTVNGMVAS 831 (842)
Q Consensus 818 -~sla~spdg~~Las 831 (842)
.-+.+..+|+.++.
T Consensus 509 ~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 509 GSPMTYSFKGKQYIG 523 (571)
T ss_dssp SCCEEEEETTEEEEE
T ss_pred eeeEEEEECCEEEEE
Confidence 22345567775443
No 258
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.71 E-value=4.5e-05 Score=82.33 Aligned_cols=228 Identities=8% Similarity=-0.040 Sum_probs=146.9
Q ss_pred EEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCC---CceeeEeecCccceE
Q 003177 574 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENP---DYSLRTFTGHSTTVM 649 (842)
Q Consensus 574 ~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~t~---~~~i~~~~~h~~~V~ 649 (842)
+|+.+. ...|+..|+.+.+....+. ....+..++|++++..|+.+ ...+.|..++++.. ......+...-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344443 3578999988876555554 34568899999876655555 45689999998751 211222222224567
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcC--CeEEEEECCCCeEEEEEe
Q 003177 650 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQ 726 (842)
Q Consensus 650 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~d--g~I~IwDl~t~~~~~~l~ 726 (842)
.+++.+.+..++++-...+.|.++++........+. .......+++.|.++.++.+... +.|..+++..........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 899987777777777778899999998544433333 23567899999988888777654 689999886543322223
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003177 727 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 803 (842)
Q Consensus 727 ~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~-dg~I~Iwdl~ 803 (842)
..-.....++|++++..|+.+. .+.|..+|+.... ...+............+++.. ..|+.+.. .+.|..++..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~--~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC--CEEEEEECCCCeEEEEeCC
Confidence 3345678999999887777766 6699999987532 223322212234456777753 45555554 5589999976
Q ss_pred CCe
Q 003177 804 ENK 806 (842)
Q Consensus 804 ~~~ 806 (842)
+++
T Consensus 238 ~g~ 240 (316)
T 1ijq_A 238 TGS 240 (316)
T ss_dssp TCC
T ss_pred CCc
Confidence 655
No 259
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=1.8e-05 Score=96.31 Aligned_cols=269 Identities=8% Similarity=0.020 Sum_probs=173.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEec-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 632 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~-------~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 632 (842)
...|.++...++|.+.+ |+.+ -|.+||..+++...... .....|.++...+++. |..|+..+-|.++|..
T Consensus 210 ~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 210 GNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ 286 (781)
T ss_dssp CSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred CCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence 35699999998887655 4454 69999987765542211 1245699999988776 4556664568889987
Q ss_pred CCCceeeEe-------------ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe----------ecCC
Q 003177 633 NPDYSLRTF-------------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------CQSG 689 (842)
Q Consensus 633 t~~~~i~~~-------------~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~----------~~~~ 689 (842)
+........ .-....|.++....+|. |..|+.++-|..|+..+........ ....
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKV 364 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSC
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcc
Confidence 654211111 11345799999988875 4456667789999987654333211 1245
Q ss_pred eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE---eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeE
Q 003177 690 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI 766 (842)
Q Consensus 690 i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l---~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i 766 (842)
|.++...+++. +.+|+.++.|.+||..++...... ......|.+++..++|.+.+...++.|.+||..++ . +
T Consensus 365 v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~---~-~ 439 (781)
T 3v9f_A 365 VSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLK---K-F 439 (781)
T ss_dssp EEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSC---E-E
T ss_pred eEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCC---c-E
Confidence 78888877654 667777788999998765432211 12346799999988888777544678999988765 2 2
Q ss_pred EEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc-C-----CCCeeEEEEeCCCCEEEEEeCCCc
Q 003177 767 HELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-H-----DKLVSSLAASTVNGMVASASHDKC 837 (842)
Q Consensus 767 ~~~~---~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~~-h-----~~~V~sla~spdg~~Lasgs~DG~ 837 (842)
..+. .....|.++...+++. |.+++. +.|.+||..+++...+.. . ...|.++...++|.+.+....+|
T Consensus 440 ~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G- 516 (781)
T 3v9f_A 440 QIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG- 516 (781)
T ss_dssp EECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-
T ss_pred EEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-
Confidence 2222 2346788888888775 666666 669999988876553322 1 36789999998888666543355
Q ss_pred EEEc
Q 003177 838 VKIW 841 (842)
Q Consensus 838 V~IW 841 (842)
|..|
T Consensus 517 l~~~ 520 (781)
T 3v9f_A 517 VGIY 520 (781)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
No 260
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.68 E-value=2.6e-06 Score=88.97 Aligned_cols=179 Identities=8% Similarity=0.023 Sum_probs=127.2
Q ss_pred cceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEE
Q 003177 646 TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCR 722 (842)
Q Consensus 646 ~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~-dg~I~IwDl~t~~~~ 722 (842)
.....|.|+ + ..++.+++.+| .|+++|+.+++.+..+..........+.++++.++.... ++.+.+||..+.+.+
T Consensus 43 ~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 43 AFTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp CEEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence 335788998 4 46777777766 899999999999999988777666555556677777765 789999999999999
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC--C---CceEEEEEeCCCCEEEEEE-cCC
Q 003177 723 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFPSLLVIG-CYE 795 (842)
Q Consensus 723 ~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~--~---~~I~sv~~spdg~~L~sgs-~dg 795 (842)
.++..... -..++ +|+..|+.+. ++.|.++|..+. +.+..+... . ..++.+.|. +|. |++.. .++
T Consensus 121 ~ti~~~~e-G~glt--~dg~~L~~SdGs~~i~~iDp~T~---~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~ 192 (262)
T 3nol_A 121 RSFNYDGE-GWGLT--HNDQYLIMSDGTPVLRFLDPESL---TPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTN 192 (262)
T ss_dssp EEEECSSC-CCCEE--ECSSCEEECCSSSEEEEECTTTC---SEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSS
T ss_pred EEEECCCC-ceEEe--cCCCEEEEECCCCeEEEEcCCCC---eEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCC
Confidence 88874322 12333 5677666666 778999999887 444444332 2 334556776 564 66665 467
Q ss_pred eEEEEECCCCeEEEEccC-------------CCCeeEEEEeCCCCEEEEEeC
Q 003177 796 TLELWNMTENKTLTLSAH-------------DKLVSSLAASTVNGMVASASH 834 (842)
Q Consensus 796 ~I~Iwdl~~~~~~~~~~h-------------~~~V~sla~spdg~~Lasgs~ 834 (842)
.|.+.|..+++++....- ....+.|+|+|+++.|+..+.
T Consensus 193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 999999999998732211 235689999998877666653
No 261
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.67 E-value=2.4e-05 Score=85.85 Aligned_cols=238 Identities=9% Similarity=0.001 Sum_probs=153.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCcee
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSL 638 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~t~~~~i 638 (842)
.+..+|.+..++. +|+.+. ...|+..++........+.. ...+..++|++....|+.+ ...+.|+.++++.... .
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~ 108 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-E 108 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-e
Confidence 3445666666644 444443 35688888877655544443 3458899999866666555 4578899999886542 2
Q ss_pred eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcC--CeEEEEE
Q 003177 639 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILD 715 (842)
Q Consensus 639 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~d--g~I~IwD 715 (842)
............+++.+.+..++++-...+.|.++++........+.. ......+++.|.++.++.+... +.|..++
T Consensus 109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 222222345678999887777877777788999999875443333322 2457899999988877776653 7899998
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003177 716 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 793 (842)
Q Consensus 716 l~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~ 793 (842)
+........+...-.....|+|++++..|+.+. .+.|..+|+.... ....+.........+++. . ..|+.+..
T Consensus 189 ~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~P~giav~-~-~~ly~td~ 263 (349)
T 3v64_C 189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-E-DSLYWTDW 263 (349)
T ss_dssp TTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSSEEEEEEE-T-TEEEEEET
T ss_pred CCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc---eEEEEeCCCCCceEEEEE-C-CEEEEecC
Confidence 875433222222344678999999877777666 6789999987542 112222234456777773 3 35555554
Q ss_pred -CCeEEEEECCCCe
Q 003177 794 -YETLELWNMTENK 806 (842)
Q Consensus 794 -dg~I~Iwdl~~~~ 806 (842)
.+.|..++..+++
T Consensus 264 ~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 264 HTKSINSANKFTGK 277 (349)
T ss_dssp TTTEEEEEETTTCC
T ss_pred CCCeEEEEEccCCC
Confidence 5588888855554
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.67 E-value=2.6e-06 Score=88.94 Aligned_cols=191 Identities=9% Similarity=0.046 Sum_probs=134.8
Q ss_pred eEEEEeccCC--CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcE
Q 003177 593 TVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 670 (842)
Q Consensus 593 ~~~~~l~~h~--~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 670 (842)
+.+.++ .|. .....|.|+ ++.++++.+.+|.|+++|+.+++..... ......-..+++ +++.++++.-.++.+
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEESSSCEE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEccCCEE
Confidence 344555 343 334788887 4566777778889999999998764333 322222233554 456677777789999
Q ss_pred EEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-----CCEEEEEEcCCCCEEE
Q 003177 671 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEYLA 745 (842)
Q Consensus 671 ~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~-----~~V~sl~~spdg~~La 745 (842)
.+||..+.+.+..+.....-..++ ++++.|+++..++.|.++|..+.+.+..+.... ..++.+.|. +|++++
T Consensus 119 ~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya 195 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA 195 (268)
T ss_dssp EEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence 999999999999998755433444 567888888888999999999998887766422 245677877 776555
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 003177 746 SVS-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY 794 (842)
Q Consensus 746 sgs-Dg~I~IwDl~s~~~~~~i~~~~~-------------~~~~I~sv~~spdg~~L~sgs~d 794 (842)
... ++.|.+.|..++ +.+..+.. .....+.|+|+|+++.|++.+..
T Consensus 196 nvw~s~~I~vIDp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 196 NIWHSSDVLEIDPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EETTCSEEEEECTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred EECCCCeEEEEeCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 554 789999999998 45554432 12467899999988877776653
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.62 E-value=7.5e-06 Score=84.69 Aligned_cols=191 Identities=15% Similarity=0.133 Sum_probs=133.5
Q ss_pred eEEEEeccCC--CCeEEEEEcCCCCEEEEEeCC--CeEEEEEcCCCCceeeEeecCcc-ceEEEEEcCCCCcEEEEEeCC
Q 003177 593 TVKSTLEEHT--QWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCDNN 667 (842)
Q Consensus 593 ~~~~~l~~h~--~~I~~l~fspdg~~Latgs~D--g~I~IWDl~t~~~~i~~~~~h~~-~V~sl~fspdg~~llasgs~D 667 (842)
+.+.++ .|. .....+.|+. +.++.+.+.+ ..|+++|+.+++. +....-... .-..+++. ++.++...-.+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-LQRAEVPPPYFGAGIVAW--RDRLIQLTWRN 84 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEESSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-EEEEeCCCCcceeEEEEe--CCEEEEEEeeC
Confidence 455555 344 4466899986 5555565554 4899999999775 333332211 12334443 56677777789
Q ss_pred CcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-----CCEEEEEEcCCCC
Q 003177 668 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGE 742 (842)
Q Consensus 668 g~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~-----~~V~sl~~spdg~ 742 (842)
+.+.+||..+.+.+..+.....-..+ .++++.|+++..++.|.++|..+.+.+..+.... ..++.+.|. +|+
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CEEEEEECCcCcEEEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 99999999999999999875544444 4567788888888999999999998887776422 345667775 676
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 003177 743 YLASVS-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY 794 (842)
Q Consensus 743 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-------------~~~~I~sv~~spdg~~L~sgs~d 794 (842)
+++... ++.|.+.|..++ +.+..+.. .....+.++++|+++.|++.+..
T Consensus 162 lyanvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EEEEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 665554 779999999998 55554432 12356899999998888877754
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.61 E-value=1.1e-05 Score=94.90 Aligned_cols=251 Identities=9% Similarity=-0.008 Sum_probs=150.4
Q ss_pred EEEEECCCcEEEEecCCCeEEEEeccCC----CCeEE-EEEcCCCCEEEEEe------CCCeEEEEEcCCCCceeeEeec
Q 003177 575 LATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTG 643 (842)
Q Consensus 575 Lasgs~Dg~I~vwd~~t~~~~~~l~~h~----~~I~~-l~fspdg~~Latgs------~Dg~I~IWDl~t~~~~i~~~~~ 643 (842)
|++++.|+.|+.+|..+++.+....... ..+++ ..+. ++ .+++++ .++.|+.+|..+++...+....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 7888899999999999999886654221 01211 1111 34 455554 3899999999988753332221
Q ss_pred Ccc------------------------------------ce-EEEEEcCCCCcEEEEEeCC----------------CcE
Q 003177 644 HST------------------------------------TV-MSLDFHPSKEDLLCSCDNN----------------SEI 670 (842)
Q Consensus 644 h~~------------------------------------~V-~sl~fspdg~~llasgs~D----------------g~I 670 (842)
... .+ ..+++.+... +++.+..+ +.|
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCccccceE
Confidence 110 00 1345556655 44444433 489
Q ss_pred EEEECCCCceeeEEeecCC----------eeEEEEe-CCC---CEEEEEEcCCeEEEEECCCCeEEEEEeCCC-------
Q 003177 671 RYWSINNGSCAGVFKCQSG----------ATQMRFQ-PRL---GRILAAAIENYISILDVETQVCRLKLQGHK------- 729 (842)
Q Consensus 671 ~vwDl~t~~~i~~~~~~~~----------i~~v~~s-p~g---~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~------- 729 (842)
..+|.++++.+..+..... ..-+... .++ ..++.++.+|.++++|.++++.+.......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 9999999999988875321 1112222 456 356667789999999999999887665211
Q ss_pred ------CCE--------------------------EEEEEcCCCCEEEEEe-----------------------------
Q 003177 730 ------NQV--------------------------HSVCWNTSGEYLASVS----------------------------- 748 (842)
Q Consensus 730 ------~~V--------------------------~sl~~spdg~~Lasgs----------------------------- 748 (842)
.++ ..++++|+..++++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 111 1356677666554421
Q ss_pred -----------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCC-
Q 003177 749 -----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK- 815 (842)
Q Consensus 749 -----------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~- 815 (842)
++.|..||+.++ +.+-..... .+...-.+...+..+++++.|+.|+.||.++++++ .+.....
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG---~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~ 516 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITG---DYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA 516 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CCcCCcccCCCcCeEEEEECCCC---CEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc
Confidence 256788888777 344333221 11211123345667888999999999999999988 3332221
Q ss_pred CeeEEEEeCCCC-EEEEE
Q 003177 816 LVSSLAASTVNG-MVASA 832 (842)
Q Consensus 816 ~V~sla~spdg~-~Lasg 832 (842)
...-+.+..+|+ |+++.
T Consensus 517 ~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 517 IGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp CSCCEEEEETTEEEEEEE
T ss_pred EeccEEEEeCCEEEEEEE
Confidence 122345566787 44443
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.61 E-value=2.2e-05 Score=87.34 Aligned_cols=236 Identities=9% Similarity=-0.003 Sum_probs=152.3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeeEe
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTF 641 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~t~~~~i~~~ 641 (842)
..|.+..+.+ +|+.+. ...|+.+++........+. ....+..++|.+.+..|+.+ ...+.|+.++++.... ...+
T Consensus 79 ~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~ 154 (386)
T 3v65_B 79 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV 154 (386)
T ss_dssp SCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE
T ss_pred CeECCccccc-eeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE
Confidence 4455555533 444443 4678889987765544444 33458899999865555544 4578899999886542 2222
Q ss_pred ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcC--CeEEEEECCC
Q 003177 642 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVET 718 (842)
Q Consensus 642 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~d--g~I~IwDl~t 718 (842)
.........+++.+.+..++++-...+.|.++++........+.. ......+++.|.++.++.+... +.|..+++..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 222345577888887777877777788899999875443333322 2457899999988887777653 6899999875
Q ss_pred CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCC
Q 003177 719 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE 795 (842)
Q Consensus 719 ~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs-~dg 795 (842)
..........-.....|+|++++..|+.+. .+.|..+|+.... ....+.........+++. . ..|+.+. ..+
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~-~~ly~td~~~~ 309 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-E-DSLYWTDWHTK 309 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-T-TEEEEEETTTT
T ss_pred CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-C-CEEEEeeCCCC
Confidence 543333333344678999998877777666 6789999987542 122222234456777773 3 3455555 455
Q ss_pred eEEEEECCCCeE
Q 003177 796 TLELWNMTENKT 807 (842)
Q Consensus 796 ~I~Iwdl~~~~~ 807 (842)
.|..++..+++.
T Consensus 310 ~V~~~~~~~G~~ 321 (386)
T 3v65_B 310 SINSANKFTGKN 321 (386)
T ss_dssp EEEEEETTTCCS
T ss_pred eEEEEECCCCcc
Confidence 898888655543
No 266
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.60 E-value=3.7e-06 Score=87.85 Aligned_cols=177 Identities=7% Similarity=0.017 Sum_probs=125.1
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEE
Q 003177 646 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLK 724 (842)
Q Consensus 646 ~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s-~dg~I~IwDl~t~~~~~~ 724 (842)
.....|.|+ ++.++.+.+.+|.|+++|+.+++.+..+ .........+.++++.++.+. .++.+.+||..+.+.+.+
T Consensus 55 ~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 345688887 4678888888999999999999999888 766665544444556666655 478999999999999998
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--CC---CceEEEEEeCCCCEEEEEE-cCCeE
Q 003177 725 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TG---NKFHSCVFHPTFPSLLVIG-CYETL 797 (842)
Q Consensus 725 l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--~~---~~I~sv~~spdg~~L~sgs-~dg~I 797 (842)
+.... .-..++ +|+..|+.+. ++.|.++|..+. +.+..+.. .. ..++.+.|. +| .|++.. .++.|
T Consensus 132 i~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~---~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I 203 (268)
T 3nok_A 132 TRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGF---ALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHSSDV 203 (268)
T ss_dssp EECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCSEE
T ss_pred EeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCC---eEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCCCeE
Confidence 87532 223444 5677777777 889999999887 44444433 22 234566776 66 466666 46699
Q ss_pred EEEECCCCeEEEEcc--------------CCCCeeEEEEeCCCCEEEEEe
Q 003177 798 ELWNMTENKTLTLSA--------------HDKLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 798 ~Iwdl~~~~~~~~~~--------------h~~~V~sla~spdg~~Lasgs 833 (842)
.+.|..+++++.... -....+.|+|+|+++.|+..+
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 999999999873221 124678999999876544444
No 267
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.59 E-value=1.4e-05 Score=82.68 Aligned_cols=181 Identities=10% Similarity=0.072 Sum_probs=126.9
Q ss_pred cCc--cceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003177 643 GHS--TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVE 717 (842)
Q Consensus 643 ~h~--~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~-dg~I~IwDl~ 717 (842)
.|. .....+.|+. +.++.+.+.+| .|+++|+.+++.+..+..........+...++.++.... ++.+.+||..
T Consensus 16 phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC
Confidence 454 4566899986 45776777654 899999999999999987777655555555677776654 7899999999
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC--C---CceEEEEEeCCCCEEEEE
Q 003177 718 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFPSLLVI 791 (842)
Q Consensus 718 t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~--~---~~I~sv~~spdg~~L~sg 791 (842)
+.+.+.++..... -..++ +++..|+.+. ++.|.++|..+. +.+..+... . ..++.+.+. +|. |++.
T Consensus 94 tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~---~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyan 165 (243)
T 3mbr_X 94 TLTPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTL---QQVGSIKVTAGGRPLDNLNELEWV-NGE-LLAN 165 (243)
T ss_dssp TTEEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TTE-EEEE
T ss_pred cCcEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCC---eEEEEEEEccCCcccccceeeEEe-CCE-EEEE
Confidence 9999998875332 23444 4666666655 889999999887 444444332 1 234556665 554 5555
Q ss_pred E-cCCeEEEEECCCCeEEEEcc--------------CCCCeeEEEEeCCCCEEEEEe
Q 003177 792 G-CYETLELWNMTENKTLTLSA--------------HDKLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 792 s-~dg~I~Iwdl~~~~~~~~~~--------------h~~~V~sla~spdg~~Lasgs 833 (842)
. .+..|.+.|..+++++.... .....+.|+++|+++.|+..+
T Consensus 166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 5 46799999999999873211 123568999999877665554
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=8.8e-06 Score=92.06 Aligned_cols=233 Identities=9% Similarity=0.085 Sum_probs=141.1
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCC----cEEEEECCCC
Q 003177 604 WITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNG 678 (842)
Q Consensus 604 ~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg----~I~vwDl~t~ 678 (842)
....|+|+| ++..|+++...+.|+.+|+.... +..+.........|+|+++++.++++...++ .+.+++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 567899998 45667766666889999987643 3444445566889999999886776655333 2333443 23
Q ss_pred cee--eEEeecCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEe--CCeE
Q 003177 679 SCA--GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELV 752 (842)
Q Consensus 679 ~~i--~~~~~~~~i~~v~~sp~g~~l~~~s-~dg~I~IwDl~t~~~~~~l~-~h~~~V~sl~~spdg~~Lasgs--Dg~I 752 (842)
... ..+........++++|+++.|+++. .++.|..||...+....... ........++|+|+|++|+.+. .+.|
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 222 2333345677889999545555554 56899999998776522222 1224568999999999666665 7789
Q ss_pred EEEEcCCCCC-ceeEEEeecC---------------CCceE-EEEEe--------CCCCEEEEEEc-CCeEEEEECCCCe
Q 003177 753 RVWSIGSGSK-GECIHELSCT---------------GNKFH-SCVFH--------PTFPSLLVIGC-YETLELWNMTENK 806 (842)
Q Consensus 753 ~IwDl~s~~~-~~~i~~~~~~---------------~~~I~-sv~~s--------pdg~~L~sgs~-dg~I~Iwdl~~~~ 806 (842)
.+++...... ...+..+.+. -.... .+++. +++ .|+++.. .+.|+.++ .++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEEC-TTSE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEEC-CCCc
Confidence 9988753210 0011111111 01123 45554 234 4555544 56899998 4566
Q ss_pred EEEEccC---------C---------CCeeEEEEeCC-CCEEEEEeCCCcEEEc
Q 003177 807 TLTLSAH---------D---------KLVSSLAASTV-NGMVASASHDKCVKIW 841 (842)
Q Consensus 807 ~~~~~~h---------~---------~~V~sla~spd-g~~Lasgs~DG~V~IW 841 (842)
...+.+. . .....|+++++ +.++++-...++|+.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 5544322 1 25789999995 5555554455667654
No 269
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.58 E-value=7.1e-05 Score=81.16 Aligned_cols=276 Identities=8% Similarity=-0.018 Sum_probs=154.9
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEec----cCCCCeEEEEEcCCCCEEEEEeC
Q 003177 547 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSA 622 (842)
Q Consensus 547 g~~~~~i~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~----~h~~~I~~l~fspdg~~Latgs~ 622 (842)
+.++..+. + .....+.+|.|.+++..+++ +.+|.|. ...+.++.-..+. .....+.+|.|.+ +. ++.++.
T Consensus 24 g~~W~~~~-~-~~~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~ 97 (327)
T 2xbg_A 24 YNPWEAIQ-L-PTTATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGE 97 (327)
T ss_dssp SCCEEEEE-C-SCSSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEE
T ss_pred CCCceEee-c-CCCCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEEC
Confidence 44554443 2 23457999999888877774 5667653 3334343222221 2345688999976 34 444556
Q ss_pred CCeEEEEEcCCCCceeeEee---cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe--ecCCeeEEEEeC
Q 003177 623 DRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQP 697 (842)
Q Consensus 623 Dg~I~IWDl~t~~~~i~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~~v~~sp 697 (842)
++.|+. ...+........ .+...+..|.+.+++. +++++ .++.|.. ....++.-.... ....+..+.+.+
T Consensus 98 ~g~i~~--S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~ 172 (327)
T 2xbg_A 98 PPIMLH--TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS-AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP 172 (327)
T ss_dssp TTEEEE--ESSTTSSCEECCCCTTCSSCEEEEEEEETTE-EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT
T ss_pred CCeEEE--ECCCCCCceECccccCCCCCeEEEEEECCCC-EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC
Confidence 665443 332222122221 2334577888776543 55444 4555432 222233222222 234678899999
Q ss_pred CCCEEEEEEcCCeEEEE-EC--CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeec---
Q 003177 698 RLGRILAAAIENYISIL-DV--ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC--- 771 (842)
Q Consensus 698 ~g~~l~~~s~dg~I~Iw-Dl--~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~--- 771 (842)
++..+++ +.+|.|+.- |- .+.+.+. ......+..+.+.+++.+++++.+|.+++.+...+ .....+..
T Consensus 173 ~~~~~~~-g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G---~tW~~~~~~~~ 246 (327)
T 2xbg_A 173 SGEYVAV-SSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS---ENWGELLSPLR 246 (327)
T ss_dssp TSCEEEE-ETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE---EEECCCBCTTS
T ss_pred CCcEEEE-ECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCC---CeeEeccCCcc
Confidence 8765544 455555443 42 2333332 23556788999999998887777888877643222 22222211
Q ss_pred -CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-Ec---cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 772 -TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 772 -~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~-~~---~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
....+..+++.+++. +++++.++.| ++..+.++.-. +. .+...+.++.|.+++ .+++++.+|.|.-++
T Consensus 247 ~~~~~~~~v~~~~~~~-~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 247 RNSVGFLDLAYRTPNE-VWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp SCCSCEEEEEESSSSC-EEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred cCCcceEEEEecCCCE-EEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 224588889988776 5555567766 45555554332 22 234568889987555 466677889887553
No 270
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.56 E-value=1.7e-05 Score=93.30 Aligned_cols=254 Identities=10% Similarity=0.005 Sum_probs=152.3
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEeccCCC----CeE-E-EEEcC--CCC-EEEEEe------CCCeEEEEEcCCCCc
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----WIT-D-VRFSP--SLS-RLATSS------ADRTVRVWDTENPDY 636 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~----~I~-~-l~fsp--dg~-~Latgs------~Dg~I~IWDl~t~~~ 636 (842)
+..|++++.|+.|+.+|..+++.+........ .+. . +.... +++ .+++++ .++.|+.+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45788888999999999999999866543220 111 1 11111 233 566654 378999999998775
Q ss_pred eeeEeecCccc-----------------------------------------eEEEEEcCCCCcEEEEEe----------
Q 003177 637 SLRTFTGHSTT-----------------------------------------VMSLDFHPSKEDLLCSCD---------- 665 (842)
Q Consensus 637 ~i~~~~~h~~~-----------------------------------------V~sl~fspdg~~llasgs---------- 665 (842)
.. ........ -..++++|+...+++..+
T Consensus 197 ~W-~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IW-MRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EE-EEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred Ee-ecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 33 22211000 012455666554443332
Q ss_pred --C-------C----CcEEEEECCCCceeeEEeecC-------CeeE-EEEe---CCCC---EEEEEEcCCeEEEEECCC
Q 003177 666 --N-------N----SEIRYWSINNGSCAGVFKCQS-------GATQ-MRFQ---PRLG---RILAAAIENYISILDVET 718 (842)
Q Consensus 666 --~-------D----g~I~vwDl~t~~~i~~~~~~~-------~i~~-v~~s---p~g~---~l~~~s~dg~I~IwDl~t 718 (842)
. | +.|..+|..+|+.+..+.... .+.. +.+. .+++ .+++++.+|.++++|.++
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 1 2 689999999999998886421 1111 2222 3553 577788899999999999
Q ss_pred CeEEEEEeCCCC--CE-------------------------------------------EEEEEcCCCCEEEEEe-----
Q 003177 719 QVCRLKLQGHKN--QV-------------------------------------------HSVCWNTSGEYLASVS----- 748 (842)
Q Consensus 719 ~~~~~~l~~h~~--~V-------------------------------------------~sl~~spdg~~Lasgs----- 748 (842)
++.+..+..... .. ..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 998876654320 00 1245566544444321
Q ss_pred -----------------------------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003177 749 -----------------------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 799 (842)
Q Consensus 749 -----------------------------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~I 799 (842)
++.|..||+.++ +.+....... .+..-.+...+..+++++.|+.|+.
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG---KVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC---CEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC---CEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEE
Confidence 467889999888 4444433221 2222222334667888999999999
Q ss_pred EECCCCeEEEEccCCCCee--EEEEeCCCCEEE
Q 003177 800 WNMTENKTLTLSAHDKLVS--SLAASTVNGMVA 830 (842)
Q Consensus 800 wdl~~~~~~~~~~h~~~V~--sla~spdg~~La 830 (842)
||.++++.+........+. -+.+..+|+.++
T Consensus 512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 9999999983222222232 256667887433
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.53 E-value=0.00016 Score=77.97 Aligned_cols=219 Identities=9% Similarity=0.015 Sum_probs=140.8
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC----CceeeEEee-cCCe
Q 003177 616 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKC-QSGA 690 (842)
Q Consensus 616 ~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t----~~~i~~~~~-~~~i 690 (842)
+|+.+. ...|+..|++.... ... ......+..++|++.+..++++-..++.|..+++.. ......+.. ....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~-~~~-~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEY-TSL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCC-EEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEEC-CCeEEEEECCCcce-Eeh-hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 344443 35689999987553 222 234456789999998777887777789999999886 222222221 2356
Q ss_pred eEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeE
Q 003177 691 TQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 766 (842)
Q Consensus 691 ~~v~~sp~g~~l~~~s-~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i 766 (842)
..+++.+.++.|+.+. ..+.|.++|+........+.........++++|.+.+|+.+. . +.|..+++.... ..
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~---~~ 156 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 156 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC---eE
Confidence 7899998777776665 468999999986544444443445778999999766665555 3 688888876431 11
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEc---cCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 767 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLS---AHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 767 ~~~~~~~~~I~sv~~spdg~~L~sgs~d-g~I~Iwdl~~~~~~~~~---~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
......-.....+++++++..|+.+... +.|..+|+.......+. ........|++. .+.++++-...+.|..+
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 1122234567899999988888887754 58999999765443332 223456788885 34455555455666554
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.51 E-value=9e-06 Score=98.62 Aligned_cols=238 Identities=10% Similarity=0.057 Sum_probs=135.1
Q ss_pred CeEEEEEc-CCCCEEEEEEC-CC----cEEEEecCCC-eEEE-EeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEE
Q 003177 562 KVESCHFS-PDGKLLATGGH-DK----KAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRV 628 (842)
Q Consensus 562 ~V~sv~fS-pdg~~Lasgs~-Dg----~I~vwd~~t~-~~~~-~l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~I 628 (842)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|+||++.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998886543 23 4999999988 6321 111 123468899999988887765 36888
Q ss_pred EEcCCCCce-eeEee-cCccceEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCc-ee--eEEe-e-cCCeeEEEEeCCC
Q 003177 629 WDTENPDYS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGS-CA--GVFK-C-QSGATQMRFQPRL 699 (842)
Q Consensus 629 WDl~t~~~~-i~~~~-~h~~~V~sl~fspdg~~llasgs~--Dg~I~vwDl~t~~-~i--~~~~-~-~~~i~~v~~sp~g 699 (842)
+++.++... ...+. ........+.|+|||+.++++... ...|+++|+.++. .. ..+. . ......+.|+. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 888765421 22222 223456788999999988877643 3468889998752 11 2222 1 22334444443 5
Q ss_pred CEEEEEEcC-----CeEEEEECCCCeEEEE-EeCCCC--CEEEEEEcCCCCEEEEE-e-CC--eEEEEEc-------CCC
Q 003177 700 GRILAAAIE-----NYISILDVETQVCRLK-LQGHKN--QVHSVCWNTSGEYLASV-S-DE--LVRVWSI-------GSG 760 (842)
Q Consensus 700 ~~l~~~s~d-----g~I~IwDl~t~~~~~~-l~~h~~--~V~sl~~spdg~~Lasg-s-Dg--~I~IwDl-------~s~ 760 (842)
+.|+..+.. ..|.++|+.++..... +..+.. .+..+.+. +..|+.. . ++ .|.++++ .++
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g 408 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG 408 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence 666555543 2678888875311112 223433 34455554 4555444 4 77 4666675 232
Q ss_pred CCceeEEEeecCC-CceEEEEE----eCCCCEE-EEEEcCC---eEEEEECCCCeEE
Q 003177 761 SKGECIHELSCTG-NKFHSCVF----HPTFPSL-LVIGCYE---TLELWNMTENKTL 808 (842)
Q Consensus 761 ~~~~~i~~~~~~~-~~I~sv~~----spdg~~L-~sgs~dg---~I~Iwdl~~~~~~ 808 (842)
. .+..+.... ..+..+.+ ++++..| ++.+... .|+.+|+.+++..
T Consensus 409 ~---~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 462 (751)
T 2xe4_A 409 T---GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT 462 (751)
T ss_dssp T---CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred c---cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 1 022222111 22233322 3455544 4444332 6888888877654
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.51 E-value=0.00011 Score=80.69 Aligned_cols=227 Identities=9% Similarity=0.030 Sum_probs=145.9
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe
Q 003177 606 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 685 (842)
Q Consensus 606 ~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~ 685 (842)
+|.+..++ .+|+.+ ....|+..+++... ...+......+..++|++.+..++++-...+.|..+++........+.
T Consensus 37 ~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~--~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 37 SCKALGPE-PVLLFA-NRIDIRQVLPHRSE--YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp CEEESSSC-CEEEEE-CBSCEEEECTTSCC--EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred cccccccC-ceeEee-cccceEEEeCCCCe--eEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 34444443 344444 34457778876543 233333345588999998878788777778899999998765444333
Q ss_pred e-cCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCC
Q 003177 686 C-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSG 760 (842)
Q Consensus 686 ~-~~~i~~v~~sp~g~~l~~~s~-dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s~ 760 (842)
. ......+++.+.++.|+.+.. .+.|.++++........+...-.....++++|.+.+|+.+. . +.|..+++...
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~ 192 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 192 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence 2 234678999987777766654 57999999886543333433445678999999776666655 4 78888887654
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEE-EccCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 003177 761 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCV 838 (842)
Q Consensus 761 ~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d-g~I~Iwdl~~~~~~~-~~~h~~~V~sla~spdg~~Lasgs~DG~V 838 (842)
. ........-.....+++++++..|+.+... +.|..+|+....... +.........|++. .+.++++-...+.|
T Consensus 193 ~---~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V 268 (349)
T 3v64_C 193 G---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI 268 (349)
T ss_dssp S---CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred C---cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeE
Confidence 2 111122234457899999988888887764 589999987654433 33334567788883 34444444445555
Q ss_pred EE
Q 003177 839 KI 840 (842)
Q Consensus 839 ~I 840 (842)
..
T Consensus 269 ~~ 270 (349)
T 3v64_C 269 NS 270 (349)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 274
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.50 E-value=5.3e-05 Score=82.03 Aligned_cols=221 Identities=7% Similarity=0.001 Sum_probs=142.0
Q ss_pred CCcEEEEecCCCe--EEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCC
Q 003177 581 DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 657 (842)
Q Consensus 581 Dg~I~vwd~~t~~--~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg 657 (842)
...|+.++++... ....+. ....+..+.|.+.+..|+ +-...+.|..++++........+...-.....+++.+.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4678889887653 222222 223567899998655554 445578899999876532122222223456788998877
Q ss_pred CcEEEEEeCCCcEEEEECCCCceeeEE-eecCCeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEEEeCCCCCEEE
Q 003177 658 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHS 734 (842)
Q Consensus 658 ~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~~i~~v~~sp~g~~l~~~s~--dg~I~IwDl~t~~~~~~l~~h~~~V~s 734 (842)
..++++-...+.|.++++........+ ........+++.|.++.++.+.. .+.|..+++........+...-.....
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Png 170 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 170 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccE
Confidence 777777777889999998754333332 22345789999998888887774 478999998754322223333346789
Q ss_pred EEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeE
Q 003177 735 VCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKT 807 (842)
Q Consensus 735 l~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~-dg~I~Iwdl~~~~~ 807 (842)
|+|++++..|+.+. .+.|..+|+..... ..+ ..........+++.. ..++.+.. .+.|..++..+++.
T Consensus 171 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~--~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAV--VKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE--ECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEeccCCEEEEEECCCCEEEEEcCCCCce-EEE--ecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCCc
Confidence 99999877777666 67999999875422 222 222344566777753 34555544 45899999876653
No 275
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.49 E-value=0.00026 Score=79.10 Aligned_cols=229 Identities=8% Similarity=-0.036 Sum_probs=150.1
Q ss_pred EEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCC---ceeeEeecCccceE
Q 003177 574 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPD---YSLRTFTGHSTTVM 649 (842)
Q Consensus 574 ~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~t~~---~~i~~~~~h~~~V~ 649 (842)
+|+.+. ...|+..++........+. ....+..|+|++.+..|+.+. ..+.|+.++++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 455444 4689999988765544443 456788999998666665554 56789999987521 11222332345678
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEEEe
Q 003177 650 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQ 726 (842)
Q Consensus 650 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~--dg~I~IwDl~t~~~~~~l~ 726 (842)
.|++.+.+..++++-...+.|.+.++........+. .......+++.|.++.|+.+.. .+.|..+++........+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 899998777788777778899999998655444443 2345789999998888887764 3789999987654433333
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003177 727 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 803 (842)
Q Consensus 727 ~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~-dg~I~Iwdl~ 803 (842)
..-.....|++++++..|+.+. .+.|..+|+..... ..+......-.....+++. +..|+.+.. .+.|..+|..
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESS
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcC
Confidence 3445788999999888777776 67899999875432 2222221223345566663 345555554 4589999966
Q ss_pred CCeE
Q 003177 804 ENKT 807 (842)
Q Consensus 804 ~~~~ 807 (842)
+++.
T Consensus 320 ~G~~ 323 (400)
T 3p5b_L 320 TGSD 323 (400)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6643
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.48 E-value=4.1e-05 Score=80.00 Aligned_cols=199 Identities=11% Similarity=0.150 Sum_probs=132.0
Q ss_pred EeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec--CCeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 640 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 717 (842)
Q Consensus 640 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~--~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~ 717 (842)
.+.+-...+..++|+|+++.++++...++.|...|.. ++.+..+... .....+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3445556799999999988888888889999999998 8888887653 467889999887655554456789999876
Q ss_pred CCe---EEEEEe------CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-------cCCCceEEEE
Q 003177 718 TQV---CRLKLQ------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------CTGNKFHSCV 780 (842)
Q Consensus 718 t~~---~~~~l~------~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-------~~~~~I~sv~ 780 (842)
... .+.... ........++|+|++..|+++. .+...||.+........+..+. .....+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 543 222221 1234568999999997777766 3333444443110001111111 1234678999
Q ss_pred EeCCCCEEEEEEcCC-eEEEEECCCCeEE---EEcc-C------CCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 781 FHPTFPSLLVIGCYE-TLELWNMTENKTL---TLSA-H------DKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 781 ~spdg~~L~sgs~dg-~I~Iwdl~~~~~~---~~~~-h------~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
++|....+++.+... .|.++|.... .+ .+.. . -.....|+|.++|+++++ ++.+.+++|
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 999887777766654 8889997755 44 2221 1 125689999999985555 666666654
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.47 E-value=8.2e-05 Score=82.74 Aligned_cols=227 Identities=9% Similarity=0.030 Sum_probs=147.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee
Q 003177 607 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 686 (842)
Q Consensus 607 ~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~ 686 (842)
|.+..+ ..+|+.+ ....|+.+++..... ..+......+..++|++.+..++++-...+.|+.+++........+..
T Consensus 81 C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~--~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 81 CKALGP-EPVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp EEECSS-CCEEEEE-CBSCEEEECTTSCCC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred ECCccc-cceeEee-cCccceeeccCCCcE--EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 444444 3344444 345688888876443 333334456889999988787887777788999999987654443332
Q ss_pred -cCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCC
Q 003177 687 -QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGS 761 (842)
Q Consensus 687 -~~~i~~v~~sp~g~~l~~~s~-dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~ 761 (842)
......+++.+.++.|+.+.. .+.|.++++........+...-.....++++|.+.+|+.+. . +.|..+++....
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 234577899987777766655 57899999876544434444445678999999777666665 4 678888876542
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEE-EccCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 003177 762 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCVK 839 (842)
Q Consensus 762 ~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d-g~I~Iwdl~~~~~~~-~~~h~~~V~sla~spdg~~Lasgs~DG~V~ 839 (842)
........-.....++|++++..|+++... +.|..+|+....... +.........|++. .+.++++-...+.|.
T Consensus 237 ---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~ 312 (386)
T 3v65_B 237 ---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSIN 312 (386)
T ss_dssp ---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred ---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEE
Confidence 122222334457899999988888887764 589999987654433 33334567788883 444555544556665
Q ss_pred Ec
Q 003177 840 IW 841 (842)
Q Consensus 840 IW 841 (842)
.+
T Consensus 313 ~~ 314 (386)
T 3v65_B 313 SA 314 (386)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.43 E-value=0.00041 Score=72.46 Aligned_cols=202 Identities=12% Similarity=0.087 Sum_probs=137.4
Q ss_pred EEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEecCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003177 554 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDT 631 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~-~Lasgs~Dg~I~vwd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 631 (842)
+.+.+-.+.+..++|+|++. ++++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 56777778899999999766 55567788899999988 888877632 2356889999998887777667789999998
Q ss_pred CCCCc--eeeEee------cCccceEEEEEcCCCCcEEEEEeCCC-cEEEEEC-CCCceeeEEee--------cCCeeEE
Q 003177 632 ENPDY--SLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSI-NNGSCAGVFKC--------QSGATQM 693 (842)
Q Consensus 632 ~t~~~--~i~~~~------~h~~~V~sl~fspdg~~llasgs~Dg-~I~vwDl-~t~~~i~~~~~--------~~~i~~v 693 (842)
..... .+.... ........|+|+|.++.++++...+. .|+.|+- .....+..+.. -..+..+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 76542 112221 13345689999999887877666554 5555551 11112222211 2357899
Q ss_pred EEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEEeCCC---------CCEEEEEEcCCCCEEEEEeCCeEEEEEc
Q 003177 694 RFQPRLGRILAAAIE-NYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVWSI 757 (842)
Q Consensus 694 ~~sp~g~~l~~~s~d-g~I~IwDl~t~~~~~~l~~h~---------~~V~sl~~spdg~~LasgsDg~I~IwDl 757 (842)
+++|..+.+++.+.+ ..|.++|.... .+..+.-.. .....|+|+++|++++++..+.+++|.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 999988887777764 68888997744 444433221 2568999999999666654666776653
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=7.5e-05 Score=84.34 Aligned_cols=235 Identities=10% Similarity=0.122 Sum_probs=142.6
Q ss_pred CeEEEEEcC-CCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-C----eEEEEEcCCCC
Q 003177 562 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R----TVRVWDTENPD 635 (842)
Q Consensus 562 ~V~sv~fSp-dg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-g----~I~IWDl~t~~ 635 (842)
....|+|+| ++..|+++...+.|+.+|..++....... .......|+|++++++|+++... + .+.+++.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457899998 45566666665889999988766554443 45668899999999977766552 1 34444443222
Q ss_pred ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee--cCCeeEEEEeCCCCEEEEEEc-CCeEE
Q 003177 636 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAI-ENYIS 712 (842)
Q Consensus 636 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~~v~~sp~g~~l~~~s~-dg~I~ 712 (842)
.....+. .......++++|++..++++-..++.|..|+...+........ ......++|+|++++++++.. .+.|.
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1112222 1234577889995555776766788999999987665333332 234778999999997666664 57899
Q ss_pred EEECCC--CeE--EEEEeCC---------------CCCEE-EEEEc--------CCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003177 713 ILDVET--QVC--RLKLQGH---------------KNQVH-SVCWN--------TSGEYLASVS-DELVRVWSIGSGSKG 763 (842)
Q Consensus 713 IwDl~t--~~~--~~~l~~h---------------~~~V~-sl~~s--------pdg~~Lasgs-Dg~I~IwDl~s~~~~ 763 (842)
.++... +.. +..+.+. -.... .++.. ++|.++++-. .+.|+.++. ++
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G--- 371 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG--- 371 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS---
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC---
Confidence 987653 221 1122111 01123 45553 3355555444 678888883 33
Q ss_pred eeEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003177 764 ECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 803 (842)
Q Consensus 764 ~~i~~~~~~------------------~~~I~sv~~spdg~~L~sgs~-dg~I~Iwdl~ 803 (842)
. +..+.+. -.....+++++++..|+++.. .+.|+.++++
T Consensus 372 ~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 372 R-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp E-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred c-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 2 2222211 124788999996555666654 4578877754
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.40 E-value=6.6e-05 Score=84.90 Aligned_cols=234 Identities=14% Similarity=0.112 Sum_probs=139.6
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCC---C-cEEEEECC
Q 003177 603 QWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S-EIRYWSIN 676 (842)
Q Consensus 603 ~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D---g-~I~vwDl~ 676 (842)
....+|+|+|+ ...|+.+...+.|+.+|..++. +..+........+++|++++. ++++.... . .+..++..
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCE--EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence 34678999984 4556666555889999987644 444444556689999999988 66554321 1 23333332
Q ss_pred CCce-eeEEeecCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEE-eC-CCCCEEEEEEcCCCCEEEEEe--CC
Q 003177 677 NGSC-AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL-QG-HKNQVHSVCWNTSGEYLASVS--DE 750 (842)
Q Consensus 677 t~~~-i~~~~~~~~i~~v~~sp~g~~l~~~s-~dg~I~IwDl~t~~~~~~l-~~-h~~~V~sl~~spdg~~Lasgs--Dg 750 (842)
.+.. ...+........++++|+.+.|+++. .++.|+.+|..++.....+ .. .......++|+|++++|+.+. .+
T Consensus 216 ~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 216 SGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp GTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred CCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 2111 11222334567788999444455444 5688999999877652222 21 222345799999999766666 67
Q ss_pred eEEEEEcCC--CCCceeEEEeecC---------------CCceEEEEE---------eCCCCEEEEEEcCCeEEEEECCC
Q 003177 751 LVRVWSIGS--GSKGECIHELSCT---------------GNKFHSCVF---------HPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 751 ~I~IwDl~s--~~~~~~i~~~~~~---------------~~~I~sv~~---------spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
.|+.+++.. +.. .....+.+. -.....+++ .+++..+++-...+.|+.++. +
T Consensus 296 ~I~~~~~d~~~~~~-~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~ 373 (433)
T 4hw6_A 296 CIYRVDYNRETGKL-AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-E 373 (433)
T ss_dssp EEEEEEBCTTTCCB-CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-T
T ss_pred EEEEEeCCCCCccc-CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-C
Confidence 899988753 211 111111111 123567888 566654444444568999985 5
Q ss_pred CeEEEEccC------------------CCCeeEEEEe-CCCCEEEEEeCCCcEEEc
Q 003177 805 NKTLTLSAH------------------DKLVSSLAAS-TVNGMVASASHDKCVKIW 841 (842)
Q Consensus 805 ~~~~~~~~h------------------~~~V~sla~s-pdg~~Lasgs~DG~V~IW 841 (842)
+...++.+. -.....|+++ +++.++++=...++|+.+
T Consensus 374 G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 374 GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 665544322 1237789999 566665555556677654
No 281
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.40 E-value=6.8e-05 Score=81.41 Aligned_cols=185 Identities=14% Similarity=0.197 Sum_probs=130.5
Q ss_pred CCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCC----CC---EEEEEeC---CCeEEEEEcCCCCceeeE
Q 003177 571 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LS---RLATSSA---DRTVRVWDTENPDYSLRT 640 (842)
Q Consensus 571 dg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspd----g~---~Latgs~---Dg~I~IWDl~t~~~~i~~ 640 (842)
...+++.....+-+.+||+ +++.+..+.. +.++.+...|+ ++ ++++... +++|.+|+++.....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3456666677789999999 8888888754 56777777663 22 2233333 579999988532223444
Q ss_pred eec------Cc-cceEEEEE--cCC-CCcEEEEEeCCCcEEEEECC-------CCceeeEEeecCCeeEEEEeCCCCEEE
Q 003177 641 FTG------HS-TTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN-------NGSCAGVFKCQSGATQMRFQPRLGRIL 703 (842)
Q Consensus 641 ~~~------h~-~~V~sl~f--spd-g~~llasgs~Dg~I~vwDl~-------t~~~i~~~~~~~~i~~v~~sp~g~~l~ 703 (842)
+.. .. ..+..+|+ ++. +..++++...+|.+..|++. +.+.++.+...+.+..+.+.+..+.|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 421 11 56777888 664 44567778888999999982 346778888888999999999999999
Q ss_pred EEEcCCeEEEEECC-----CCeEEEEEe-C-CCCCEEEEEE--cCCCC-EEEEEe--CCeEEEEEcC
Q 003177 704 AAAIENYISILDVE-----TQVCRLKLQ-G-HKNQVHSVCW--NTSGE-YLASVS--DELVRVWSIG 758 (842)
Q Consensus 704 ~~s~dg~I~IwDl~-----t~~~~~~l~-~-h~~~V~sl~~--spdg~-~Lasgs--Dg~I~IwDl~ 758 (842)
++-++..|..||.+ +++.+..+. + ....+..|++ .++++ ||++++ ++.+.|||..
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99999888888865 345555542 2 2246888888 45556 666666 7899999996
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.39 E-value=2.9e-05 Score=94.18 Aligned_cols=192 Identities=10% Similarity=0.038 Sum_probs=115.1
Q ss_pred CeEEEEEc-CCCCEEEEEeC-CC----eEEEEEcCCC-CceeeEeecCccceEEEEEcCCCCcEEEEEeCC----CcEEE
Q 003177 604 WITDVRFS-PSLSRLATSSA-DR----TVRVWDTENP-DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRY 672 (842)
Q Consensus 604 ~I~~l~fs-pdg~~Latgs~-Dg----~I~IWDl~t~-~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D----g~I~v 672 (842)
.+...+|+ |||++||.+.. +| .|+++|+.++ ......+. .....++|+||++.++++...+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 68889999 99998886544 22 5999999987 52111111 1234688999998888776532 36888
Q ss_pred EECCCCce--eeEEee--cCCeeEEEEeCCCCEEEEEEcC---CeEEEEECCCC--eE--EEEEeCCCCCEEEEEEcCCC
Q 003177 673 WSINNGSC--AGVFKC--QSGATQMRFQPRLGRILAAAIE---NYISILDVETQ--VC--RLKLQGHKNQVHSVCWNTSG 741 (842)
Q Consensus 673 wDl~t~~~--i~~~~~--~~~i~~v~~sp~g~~l~~~s~d---g~I~IwDl~t~--~~--~~~l~~h~~~V~sl~~spdg 741 (842)
+++.++.. ...+.. ......+.|+|++++|+....+ ..|+++|+.++ .. ............++.|+.++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 99987642 233322 2335678999999998877643 47889999875 23 22223344555666665444
Q ss_pred CEEEEEe-C--C--eEEEEEcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEE-EEcCC--eEEEEEC
Q 003177 742 EYLASVS-D--E--LVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLV-IGCYE--TLELWNM 802 (842)
Q Consensus 742 ~~Lasgs-D--g--~I~IwDl~s~~~~~~i~~~~~~~~--~I~sv~~spdg~~L~s-gs~dg--~I~Iwdl 802 (842)
.+++.+. + + .|.++|+.+......+ +..+.. .+..+.+ .+..|++ ...++ .|+++++
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~--li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHV--LVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCE--EECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceee--EECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEec
Confidence 4444444 4 2 6777777642111110 122233 3344444 4555554 44556 5777785
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.37 E-value=0.00027 Score=76.37 Aligned_cols=221 Identities=10% Similarity=0.014 Sum_probs=141.3
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcee-eEEe-ecCCeeEE
Q 003177 616 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK-CQSGATQM 693 (842)
Q Consensus 616 ~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i-~~~~-~~~~i~~v 693 (842)
+|+.+ ....|+.++++...............+..++|++.+..++++-...+.|..+++...... ..+. .-.....+
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEE-ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 34444 356799999987542222222233457789999977778877777889999999866422 1222 22456789
Q ss_pred EEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEe
Q 003177 694 RFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHEL 769 (842)
Q Consensus 694 ~~sp~g~~l~~~s~-dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~ 769 (842)
++.+.++.|+.+.. .+.|.++++........+.........++++|.+.+|+.+. .+.|..+++.... .....
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~ 161 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFIII 161 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS---CEEEE
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC---eEEEE
Confidence 99987777766654 57999999876543333334455678999999766666555 4678888876432 11112
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEE-ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 770 SCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 770 ~~~~~~I~sv~~spdg~~L~sgs~d-g~I~Iwdl~~~~~~~~-~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
...-.....+++++++..|+.+... +.|..+|+.......+ .........+++.. +.++++-...+.|..+
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILAC 234 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEE
Confidence 2233456899999988888887764 5899999976544333 23445667787753 3444444445555543
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.37 E-value=0.0004 Score=77.57 Aligned_cols=219 Identities=9% Similarity=0.015 Sum_probs=143.2
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----ceeeEEe-ecCCe
Q 003177 616 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 690 (842)
Q Consensus 616 ~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~----~~i~~~~-~~~~i 690 (842)
+|+.+. ...|+..+++.... ..+......+..|+|++.+..++++-...+.|+.+++... .....+. .....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~--~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEec-cceeEEEccCCcce--eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 444443 46788888886543 3333445678999999987878877777889999998752 2222222 23457
Q ss_pred eEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeE
Q 003177 691 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECI 766 (842)
Q Consensus 691 ~~v~~sp~g~~l~~~s~-dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i 766 (842)
..+++.+.++.|+.+.. .+.|.+++++.......+...-.....|+++|.+.+|+.+. .+.|...++.... ..
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~ 238 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 238 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cE
Confidence 78999986677766654 68999999987655555544455688999999776666655 3678888886542 22
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEcc---CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 767 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 767 ~~~~~~~~~I~sv~~spdg~~L~sgs~d-g~I~Iwdl~~~~~~~~~~---h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
..+...-.....+++++++..|+.+... +.|..+|+.......+.. .......|++. .+.++++-...+.|..+
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 316 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEE
Confidence 2222333567899999988888888764 589999997665443322 23455677773 33444454455566543
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.33 E-value=0.00044 Score=83.89 Aligned_cols=238 Identities=8% Similarity=-0.040 Sum_probs=151.8
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCC---ceee
Q 003177 564 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPD---YSLR 639 (842)
Q Consensus 564 ~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~t~~---~~i~ 639 (842)
+|.++.+.. +|+.+ ....|+..++........+. ....+..|+|.+....|+ +-...+.|+.+++.... ....
T Consensus 388 ~C~~~~~~p-~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~ 464 (791)
T 3m0c_C 388 ACKAVGSIA-YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 464 (791)
T ss_dssp CCEETTSCC-EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE
T ss_pred eeeeccccc-ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE
Confidence 344433322 44444 34678888887665444443 445688999998655555 44456789999987531 1122
Q ss_pred EeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEEcC--CeEEEEEC
Q 003177 640 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDV 716 (842)
Q Consensus 640 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s~d--g~I~IwDl 716 (842)
.+.........|++.+.+..|+++-...+.|.+.++........+. .......|++.|..++|+.+... +.|.+.++
T Consensus 465 vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 465 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 2332345677899998888888888888999999998554433333 23457899999988888877743 68999999
Q ss_pred CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003177 717 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 794 (842)
Q Consensus 717 ~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d 794 (842)
........+...-.....|++++.+..|+.+. .+.|.++++..... ..+......-.....|++. +.+|+++...
T Consensus 545 dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~--~~~lYwtD~~ 621 (791)
T 3m0c_C 545 NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDII 621 (791)
T ss_dssp TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETT
T ss_pred CCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEe--CCEEEEEECC
Confidence 86555444444446789999998877777766 66899999865432 2222111112234456654 4467776654
Q ss_pred -CeEEEEECCCCeE
Q 003177 795 -ETLELWNMTENKT 807 (842)
Q Consensus 795 -g~I~Iwdl~~~~~ 807 (842)
+.|...|..+++.
T Consensus 622 ~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 622 NEAIFSANRLTGSD 635 (791)
T ss_dssp TTEEEEEETTTCCC
T ss_pred CCEEEEEeCCCCcc
Confidence 5888888766643
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.26 E-value=0.00026 Score=79.97 Aligned_cols=234 Identities=10% Similarity=0.053 Sum_probs=140.6
Q ss_pred CeEEEEEcCC--CCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----C-eEEEEEcCCC
Q 003177 562 KVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----R-TVRVWDTENP 634 (842)
Q Consensus 562 ~V~sv~fSpd--g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g-~I~IWDl~t~ 634 (842)
...+|+|+++ +..|+++...+.|+.+|..++.....+ .......+|+|+++++ |+.+... . .+..++....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4678999984 445555555489999999887766544 3455689999999999 5544432 1 2333333322
Q ss_pred CceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEE-eec--CCeeEEEEeCCCCEEEEEEc-CCe
Q 003177 635 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQ--SGATQMRFQPRLGRILAAAI-ENY 710 (842)
Q Consensus 635 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~--~~i~~v~~sp~g~~l~~~s~-dg~ 710 (842)
......+. .......++++|++..++++-..++.|+.+|..++.....+ ... .....++|+|++++|+++.. .+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11111121 23445678899954556666667789999999877763322 221 22346999999997776665 578
Q ss_pred EEEEECC--CCeE--EEEEeCC---------------CCCEEEEEE---------cCCCCEEEEEe-CCeEEEEEcCCCC
Q 003177 711 ISILDVE--TQVC--RLKLQGH---------------KNQVHSVCW---------NTSGEYLASVS-DELVRVWSIGSGS 761 (842)
Q Consensus 711 I~IwDl~--t~~~--~~~l~~h---------------~~~V~sl~~---------spdg~~Lasgs-Dg~I~IwDl~s~~ 761 (842)
|..++.. ++.. ...+.+. -.....+++ .++|.++++-. .+.|++++. ++
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G- 374 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG- 374 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS-
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC-
Confidence 9998865 2311 1122111 123567899 66777666655 678998884 33
Q ss_pred CceeEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003177 762 KGECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 803 (842)
Q Consensus 762 ~~~~i~~~~~~------------------~~~I~sv~~spdg~~L~sgs~-dg~I~Iwdl~ 803 (842)
.+..+.+. -.....++++|....|+++.. .+.|+.++++
T Consensus 375 ---~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 ---RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ---EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ---CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 22222211 123677888844344555544 4577777654
No 287
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=0.00035 Score=79.74 Aligned_cols=232 Identities=12% Similarity=0.104 Sum_probs=138.7
Q ss_pred CeEEEEEcC-CCCEEEEEeC-CCeEEEEEcCCCCceeeEeecC----ccceEEEEE-------cCCCCcEEEEEeCCC--
Q 003177 604 WITDVRFSP-SLSRLATSSA-DRTVRVWDTENPDYSLRTFTGH----STTVMSLDF-------HPSKEDLLCSCDNNS-- 668 (842)
Q Consensus 604 ~I~~l~fsp-dg~~Latgs~-Dg~I~IWDl~t~~~~i~~~~~h----~~~V~sl~f-------spdg~~llasgs~Dg-- 668 (842)
....|+|.| +...|+.+.. .+.|++.|+.++. +..+..- ......|+| ++++..++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 467899998 3555555544 4678888887644 3333221 235889999 999887776665542
Q ss_pred ----cEEEEECCC-Ccee-----eEEeecCCeeEEEEeCCCCEEEEEE-cCCeEEEEECC-------CCeE---------
Q 003177 669 ----EIRYWSINN-GSCA-----GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVE-------TQVC--------- 721 (842)
Q Consensus 669 ----~I~vwDl~t-~~~i-----~~~~~~~~i~~v~~sp~g~~l~~~s-~dg~I~IwDl~-------t~~~--------- 721 (842)
.|.+++... +... ..+........++++|+++.|+++. .++.|+.||+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266776443 2221 2233334567889999766666655 56789999987 4432
Q ss_pred -----EEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcee--EEEeecC---C------------CceE
Q 003177 722 -----RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC--IHELSCT---G------------NKFH 777 (842)
Q Consensus 722 -----~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~--i~~~~~~---~------------~~I~ 777 (842)
+... +.......|+|+|+|++|+.+. ...|+.++...... .. ...+.+. . ....
T Consensus 298 g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~-~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 298 NTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK-EFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-EECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc-eecccEEecCCCCCCcccCCcccccccCCCe
Confidence 2222 2334568999999999766665 66888876543210 10 0111111 0 1234
Q ss_pred -EEEEe-------CCCCEEEEEE-cCCeEEEEECCCCeEEEEccC------------------------CCCeeEEEEeC
Q 003177 778 -SCVFH-------PTFPSLLVIG-CYETLELWNMTENKTLTLSAH------------------------DKLVSSLAAST 824 (842)
Q Consensus 778 -sv~~s-------pdg~~L~sgs-~dg~I~Iwdl~~~~~~~~~~h------------------------~~~V~sla~sp 824 (842)
.++.. .++. |+++. ....|+.++ .++.+.++.+. -.....|++++
T Consensus 376 ~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEECTTCCSSCCEE-EEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEccccccccCCCe-EEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 45554 4454 55544 456999999 56665554322 12367899999
Q ss_pred C-CCEEEEEeCCCcEEEc
Q 003177 825 V-NGMVASASHDKCVKIW 841 (842)
Q Consensus 825 d-g~~Lasgs~DG~V~IW 841 (842)
+ +.++++=....+|+.+
T Consensus 454 ~~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp TTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCCEEEEE
Confidence 7 6555555556677754
No 288
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.14 E-value=6.5e-05 Score=89.58 Aligned_cols=228 Identities=7% Similarity=-0.032 Sum_probs=129.0
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEEcCCCCceee-Ee-ecCccceEEEEEcCCCCcEEEEEe-CCCcEE
Q 003177 607 DVRFSP-SLSRLATSSADR-----------TVRVWDTENPDYSLR-TF-TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIR 671 (842)
Q Consensus 607 ~l~fsp-dg~~Latgs~Dg-----------~I~IWDl~t~~~~i~-~~-~~h~~~V~sl~fspdg~~llasgs-~Dg~I~ 671 (842)
++++.+ ++++++.|+.+. .+.+||+.++..... .. ..+.....++++..++. +++.|+ .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceE
Confidence 566777 888888887643 688999987664221 12 12233344567777766 555665 556899
Q ss_pred EEECCCCceeeEEee--cCCeeEEEEeCCCCEEEEEE-cC-----CeEEEEECCCCeEEEEE----eCCCCCEEEEEEcC
Q 003177 672 YWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAA-IE-----NYISILDVETQVCRLKL----QGHKNQVHSVCWNT 739 (842)
Q Consensus 672 vwDl~t~~~i~~~~~--~~~i~~v~~sp~g~~l~~~s-~d-----g~I~IwDl~t~~~~~~l----~~h~~~V~sl~~sp 739 (842)
+||..+.+....-.. ...-.++++.++++.+++|+ .+ ..+.+||..+.+-...- ......-....+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 999987754433222 12234566667888888888 34 57999999887543320 00000000011223
Q ss_pred CCCEEEEEe----------CCeEEEEEcCCCCCceeEEEeec------CCCceEEEEEeC-CCCEEEEEEcCC-------
Q 003177 740 SGEYLASVS----------DELVRVWSIGSGSKGECIHELSC------TGNKFHSCVFHP-TFPSLLVIGCYE------- 795 (842)
Q Consensus 740 dg~~Lasgs----------Dg~I~IwDl~s~~~~~~i~~~~~------~~~~I~sv~~sp-dg~~L~sgs~dg------- 795 (842)
++..++.++ ...+..||..+..-......... ....-.++.|.. +++.+++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 444433333 34678888877632111111111 011224445544 566666666432
Q ss_pred ----eEEEEECCCCeEEEEc---cCCCCe-eEEEEeCCCCEEEEEeCC
Q 003177 796 ----TLELWNMTENKTLTLS---AHDKLV-SSLAASTVNGMVASASHD 835 (842)
Q Consensus 796 ----~I~Iwdl~~~~~~~~~---~h~~~V-~sla~spdg~~Lasgs~D 835 (842)
.|.+||..+....... .+.... .++++.+++++++.|+.+
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 6888998887766543 222222 345667899999999865
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.12 E-value=0.0019 Score=78.36 Aligned_cols=216 Identities=9% Similarity=0.029 Sum_probs=139.6
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----ceeeEEe-ecCCe
Q 003177 616 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 690 (842)
Q Consensus 616 ~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~----~~i~~~~-~~~~i 690 (842)
+|+.+ ....|+..++..... ..+......+..|+|++....++++-...+.|+.+++... .....+. .....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccc-cccceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 44444 345688888876543 3333345678899999977778877777889999998753 2222332 23457
Q ss_pred eEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeE
Q 003177 691 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 766 (842)
Q Consensus 691 ~~v~~sp~g~~l~~~s~-dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i 766 (842)
..|++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+.+. . +.|.+.++... ...
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---~~~ 550 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY 550 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---ceE
Confidence 78999988877777765 58999999986655444444455689999999866666655 3 67888888654 222
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEcc---CCCCeeEEEEeCCCCEEEEEe-CCCcEE
Q 003177 767 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASAS-HDKCVK 839 (842)
Q Consensus 767 ~~~~~~~~~I~sv~~spdg~~L~sgs~d-g~I~Iwdl~~~~~~~~~~---h~~~V~sla~spdg~~Lasgs-~DG~V~ 839 (842)
..+...-.....|++++.+..|+++... +.|..+++.......+.. .-....+|++. +..|+.+. ..+.|.
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 626 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEE
Confidence 2233334578899999888888888654 489999997765543332 22344566664 33444443 334444
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=0.00067 Score=77.46 Aligned_cols=240 Identities=14% Similarity=0.134 Sum_probs=144.2
Q ss_pred eEEEEEcC-CCCEEEEE-ECCCcEEEEecCCCeEEEEeccC---CCCeEEEEE-------cCCCCEEEEEeCCC------
Q 003177 563 VESCHFSP-DGKLLATG-GHDKKAVLWCTESFTVKSTLEEH---TQWITDVRF-------SPSLSRLATSSADR------ 624 (842)
Q Consensus 563 V~sv~fSp-dg~~Lasg-s~Dg~I~vwd~~t~~~~~~l~~h---~~~I~~l~f-------spdg~~Latgs~Dg------ 624 (842)
...|+|+| ++..|+++ ...+.|++.|.+++.....+... ......|+| ++++.+|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 56899998 34444444 44467899998887766555332 235899999 99999777776654
Q ss_pred -eEEEEEcCC-CCce----eeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECC-------CCce-----------
Q 003177 625 -TVRVWDTEN-PDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------NGSC----------- 680 (842)
Q Consensus 625 -~I~IWDl~t-~~~~----i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-------t~~~----------- 680 (842)
.|.+++... +... ...+... .....++++|++..|+++...++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 266665443 1211 0122211 2345788899778788888888999999997 5543
Q ss_pred e-eEEee--cCCeeEEEEeCCCCEEEEEEc-CCeEEEEEC--CCCeE--EEEEeCC---C------------CCEE-EEE
Q 003177 681 A-GVFKC--QSGATQMRFQPRLGRILAAAI-ENYISILDV--ETQVC--RLKLQGH---K------------NQVH-SVC 736 (842)
Q Consensus 681 i-~~~~~--~~~i~~v~~sp~g~~l~~~s~-dg~I~IwDl--~t~~~--~~~l~~h---~------------~~V~-sl~ 736 (842)
. ..+.. ......++|+|+++.++++.. .+.|+.+|. ..+.. ...+.+. . .... .++
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~ 379 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF 379 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence 1 11222 234678999999997666664 578888654 33332 0122211 1 1234 455
Q ss_pred Ec-------CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC------------------------CCceEEEEEeCC
Q 003177 737 WN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT------------------------GNKFHSCVFHPT 784 (842)
Q Consensus 737 ~s-------pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~------------------------~~~I~sv~~spd 784 (842)
.. +++.++++-. ...|+.++ .++ .+.++.+. -.....++++++
T Consensus 380 vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G----~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 380 VKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG----IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC----BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EccccccccCCCeEEEEECCCCEEEEEe-CCC----CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 54 4555555544 77899998 333 23333221 123567888887
Q ss_pred CCEEEEEEc-CCeEEEEECCCCeEE
Q 003177 785 FPSLLVIGC-YETLELWNMTENKTL 808 (842)
Q Consensus 785 g~~L~sgs~-dg~I~Iwdl~~~~~~ 808 (842)
...|+++.. ...|+.+++.....+
T Consensus 455 ~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCEEEEEeCCCCEEEEEECCCCccc
Confidence 334555554 448888887765544
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.08 E-value=0.0025 Score=75.40 Aligned_cols=219 Identities=9% Similarity=0.006 Sum_probs=144.8
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec-CCeeEEE
Q 003177 616 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMR 694 (842)
Q Consensus 616 ~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~~v~ 694 (842)
+|+.+ ....|+..++++...........-..+..|+|++.++.++++-..++.|..+++........+... .....++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44444 567899999986543222222233568899999988888888778899999999865444444332 3577899
Q ss_pred EeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEee
Q 003177 695 FQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELS 770 (842)
Q Consensus 695 ~sp~g~~l~~~s~-dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~ 770 (842)
+.+.++.|+.+.. .+.|.+.++........+...-.....|+++|...+|+.+. .+.|...++..... ..+ .
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l---~ 162 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTL---V 162 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEE---E
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEE---E
Confidence 9988777777665 57899999976543333333445678999998655565555 45788888765422 222 2
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 771 CTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 771 ~~~~~I~sv~~spdg~~L~sgs~d-g~I~Iwdl~~~~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
........+++++++..|+.+... +.|..+|+.......+.........|++.. +.++++-...+.|..
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 245677899999998888888764 589999997655443334444566788764 334444334555554
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.02 E-value=0.0014 Score=77.47 Aligned_cols=223 Identities=7% Similarity=-0.010 Sum_probs=138.6
Q ss_pred CCCcEEEEecCCCe-EEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeeEeecCccceEEEEEcCCC
Q 003177 580 HDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 657 (842)
Q Consensus 580 ~Dg~I~vwd~~t~~-~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg 657 (842)
....|++.++.... ....+...-..+..|+|++.+..|+.+.. .+.|..++++........+...-.....+++.+.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 35678888887643 22222334456889999997776666554 67899999875432122333333568899999987
Q ss_pred CcEEEEEeCCCcEEEEECCCCceeeEE-eecCCeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEEEeCCCCCEEE
Q 003177 658 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHS 734 (842)
Q Consensus 658 ~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~~i~~v~~sp~g~~l~~~s~--dg~I~IwDl~t~~~~~~l~~h~~~V~s 734 (842)
..++++-...+.|.+.++........+ ..-.....+++.|.++.++.+.. .+.|...++............-.....
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 175 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence 878878778899999999854433333 22345778999998888887774 367888887754333333334456789
Q ss_pred EEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeE
Q 003177 735 VCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKT 807 (842)
Q Consensus 735 l~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~-dg~I~Iwdl~~~~~ 807 (842)
|++++++..|+.+. .+.|..+|+........+ .........+++..+ .|+.+.. .+.|...|..+++.
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~---~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE---eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence 99999877777766 668999988754221111 111222345666555 5666654 45899999877653
No 293
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.02 E-value=0.00091 Score=73.25 Aligned_cols=225 Identities=8% Similarity=0.065 Sum_probs=122.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeE--EEEec---cCCCCeEEEEEcCC---CCEEEEEeC-C-----CeE
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE---EHTQWITDVRFSPS---LSRLATSSA-D-----RTV 626 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~--~~~l~---~h~~~I~~l~fspd---g~~Latgs~-D-----g~I 626 (842)
..-.+++|.|||++++ +..+|.|++++ +++. +..+. ........|+|+|+ +..|+++.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3467899999998555 56679999998 4432 22221 22456899999998 555555443 2 678
Q ss_pred EEEEcCCCCc-----eeeEee---cCccceEEEEEcCCCCcEEEEEeC-------------CCcEEEEECCCC-------
Q 003177 627 RVWDTENPDY-----SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG------- 678 (842)
Q Consensus 627 ~IWDl~t~~~-----~i~~~~---~h~~~V~sl~fspdg~~llasgs~-------------Dg~I~vwDl~t~------- 678 (842)
..|+...... .+..+. +.......|+|.|+|. ++++.+. .|.|..++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888764311 111122 1112346899999985 4444321 256666665530
Q ss_pred -----ceeeEEee-cCCeeEEEEeCCCCEEEEEEcC-Ce--------EEEEECCC----------------CeEEEEEeC
Q 003177 679 -----SCAGVFKC-QSGATQMRFQPRLGRILAAAIE-NY--------ISILDVET----------------QVCRLKLQG 727 (842)
Q Consensus 679 -----~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~d-g~--------I~IwDl~t----------------~~~~~~l~~ 727 (842)
.....+.. ......++|+|+.+.|+++... +. |.+..... ..++..+.
T Consensus 187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~- 265 (352)
T 2ism_A 187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP- 265 (352)
T ss_dssp TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-
Confidence 11112221 2336678999954445555442 22 33332211 01222232
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc---eeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003177 728 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG---ECIHELSCTGNKFHSCVFHPTFPSLLVI 791 (842)
Q Consensus 728 h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~---~~i~~~~~~~~~I~sv~~spdg~~L~sg 791 (842)
+......++| .+|.++++.- .+.|...++...... .....+......+..+++.|+|..+++.
T Consensus 266 ~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 266 QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 2234567777 4666555444 667888877644210 0112222234678899999998654444
No 294
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.98 E-value=0.0057 Score=72.20 Aligned_cols=276 Identities=8% Similarity=-0.009 Sum_probs=159.7
Q ss_pred CCeEEEEEcCCCCEEEE-EECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCce
Q 003177 561 SKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS 637 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Las-gs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~--Dg~I~IWDl~t~~~~ 637 (842)
.....+++.+.+..|+. -...+.|.+.+++.......+...-.....|++.|.+.+|+.+.. .+.|...+++....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~- 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR- 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence 46889999986555544 455689999998764433333344456789999997666666654 35677777764332
Q ss_pred eeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-ecCCeeEEEEeCCCCEEEEEE-cCCeEEEEE
Q 003177 638 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA-IENYISILD 715 (842)
Q Consensus 638 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l~~~s-~dg~I~IwD 715 (842)
.......-.....|+++++++.++++-...+.|..+|+.......... .......+++..+ .++.+. ..+.|...|
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACN 240 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEE
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEE
Confidence 222222345678999999888788777777899999987543332222 1123345666544 555554 357888888
Q ss_pred CCCCeEEEEEeC-----------CC--------------CCEEEEE-----------EcCCC---------------CEE
Q 003177 716 VETQVCRLKLQG-----------HK--------------NQVHSVC-----------WNTSG---------------EYL 744 (842)
Q Consensus 716 l~t~~~~~~l~~-----------h~--------------~~V~sl~-----------~spdg---------------~~L 744 (842)
..+++....+.. |. +....+| .+|.| .+|
T Consensus 241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L 320 (619)
T 3s94_A 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL 320 (619)
T ss_dssp SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence 876643222211 10 0000111 11211 144
Q ss_pred EEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEE-ccCCCCeeEEEE
Q 003177 745 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTL-SAHDKLVSSLAA 822 (842)
Q Consensus 745 asgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~-dg~I~Iwdl~~~~~~~~-~~h~~~V~sla~ 822 (842)
+.+..+.|+..++...........+. .-..+..++|++.+..|+.+.. .+.|+.+++.......+ ...-..+..+++
T Consensus 321 l~~~~~~i~~i~l~~~~~~~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAv 399 (619)
T 3s94_A 321 LLARRTDLRRISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV 399 (619)
T ss_dssp EEEESSCEEEEESSSTTCCCEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEcccceEEEecCCCccceeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEE
Confidence 44555667777776543211111111 1245778999997777877765 56899999877544333 233356788999
Q ss_pred eCCCCEEEEE-eCCCcEEE
Q 003177 823 STVNGMVASA-SHDKCVKI 840 (842)
Q Consensus 823 spdg~~Lasg-s~DG~V~I 840 (842)
...++.|+.+ +..+.|.+
T Consensus 400 D~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 400 DWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp ETTTTEEEEEETTTTEEEE
T ss_pred ecccCcEEEEeCCCCcEEE
Confidence 8755544444 34455544
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.97 E-value=0.0076 Score=71.24 Aligned_cols=224 Identities=8% Similarity=-0.019 Sum_probs=150.4
Q ss_pred EEEEEECCCcEEEEecCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeeEeecCccceEEE
Q 003177 574 LLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSL 651 (842)
Q Consensus 574 ~Lasgs~Dg~I~vwd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl 651 (842)
+|+.+ ....|+..++++......+. ..-..+..|+|++.+..|+.+ ..++.|+.++++.... ...+.........|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence 44444 45789999998655433332 223468899999976666555 4578999999875432 22222222457789
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCceeeEE-eecCCeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEEEeCC
Q 003177 652 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGH 728 (842)
Q Consensus 652 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~~i~~v~~sp~g~~l~~~s~--dg~I~IwDl~t~~~~~~l~~h 728 (842)
++.+.+..++++-...+.|.+.++........+ ..-.....+++.|..+.|+.+.. .+.|...++........+. .
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-N 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-C
Confidence 998887878877777889999999754433333 22345789999998888887774 4688888887554333333 4
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 003177 729 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 805 (842)
Q Consensus 729 ~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~-dg~I~Iwdl~~~ 805 (842)
-.....|++++++..|+.+. .+.|..+|+..... +. +.........+++.. ..|+.+.. .+.|...|..++
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v---~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EV---IADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE---EEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EE---eeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCC
Confidence 45788999999888777776 67999999976532 22 222334456777765 36666665 568999997666
Q ss_pred e
Q 003177 806 K 806 (842)
Q Consensus 806 ~ 806 (842)
+
T Consensus 239 ~ 239 (628)
T 4a0p_A 239 Q 239 (628)
T ss_dssp C
T ss_pred C
Confidence 4
No 296
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.95 E-value=0.0016 Score=70.34 Aligned_cols=231 Identities=11% Similarity=0.016 Sum_probs=130.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEec---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CC
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PD 635 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~---~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t-~~ 635 (842)
...+.+|.|++ +..++ ++.++.|+. ..+.++.-..+. .+...+..|.+.+++..++++ .+|.| |.... +.
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~ 152 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGK 152 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCC
Confidence 44688899986 44444 455665544 333343333322 234567888887776666555 45644 32222 22
Q ss_pred ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEE-EC--CCCceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEE
Q 003177 636 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW-SI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 712 (842)
Q Consensus 636 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vw-Dl--~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~ 712 (842)
.-......+...+..+.+.+++. +++.+. +|.|..- |- .+-+.+. ......+..+.+.+++. +++++.+|.++
T Consensus 153 tW~~~~~~~~~~~~~~~~~~~~~-~~~~g~-~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~-~~~~~~~G~~~ 228 (327)
T 2xbg_A 153 NWQALVQEAIGVMRNLNRSPSGE-YVAVSS-RGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGR-LWMIVNGGKIA 228 (327)
T ss_dssp SEEEEECSCCCCEEEEEECTTSC-EEEEET-TSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSC-EEEEETTTEEE
T ss_pred CCEEeecCCCcceEEEEEcCCCc-EEEEEC-CCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCC-EEEEeCCceEE
Confidence 21222334556789999999865 554444 5555443 32 2222221 12245678888888865 55666778887
Q ss_pred EEECCCCeEEEEEe-C---CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003177 713 ILDVETQVCRLKLQ-G---HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 788 (842)
Q Consensus 713 IwDl~t~~~~~~l~-~---h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L 788 (842)
+.+...++.-..+. . +...+.++.+.+++.+++++.++.| ++....+.....+.........+.++.|.+++ .+
T Consensus 229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~ 306 (327)
T 2xbg_A 229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QG 306 (327)
T ss_dssp EEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EE
T ss_pred EecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ce
Confidence 76533343332222 1 2235889999998888888888877 44555453222221111123567888887554 57
Q ss_pred EEEEcCCeEEEEEC
Q 003177 789 LVIGCYETLELWNM 802 (842)
Q Consensus 789 ~sgs~dg~I~Iwdl 802 (842)
++++.+|.|..++-
T Consensus 307 ~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 307 FILGQKGILLRYVT 320 (327)
T ss_dssp EEECSTTEEEEECC
T ss_pred EEEcCCceEEEEcC
Confidence 78888888777653
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.94 E-value=1.6e-05 Score=95.51 Aligned_cols=226 Identities=8% Similarity=-0.022 Sum_probs=137.0
Q ss_pred CCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCC---CceeeEeecCccceEEEEEcCC
Q 003177 581 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPS 656 (842)
Q Consensus 581 Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~t~---~~~i~~~~~h~~~V~sl~fspd 656 (842)
.+.|++.++.+.+....+.. ...+..|+|.+.+..|+.+. ..+.|+.+++... ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 46788888887665544433 34567899998766666654 4578999998751 1111122112233567888876
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceeeEEee-cCCeeEEEEeCCCCEEEEEEcC--CeEEEEECCCCeEEEEEeCCCCCEE
Q 003177 657 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQGHKNQVH 733 (842)
Q Consensus 657 g~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~~v~~sp~g~~l~~~s~d--g~I~IwDl~t~~~~~~l~~h~~~V~ 733 (842)
+..|+++-...+.|.++++........+.. ......+++.|.+++|+.+... +.|.++++........+...-....
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 543 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence 666776666678999999886544433332 2456788999977777666542 6888888764322222222234567
Q ss_pred EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEE
Q 003177 734 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTL 810 (842)
Q Consensus 734 sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~-dg~I~Iwdl~~~~~~~~ 810 (842)
.|+|++++..|+.+. .+.|.++++..... ..+............+++..+ .|+++.. .+.|..++..+++.+..
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEE
Confidence 899999876666555 67899999875321 222111111223345555544 5555554 46899999888877643
No 298
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.94 E-value=0.0051 Score=67.31 Aligned_cols=230 Identities=10% Similarity=0.043 Sum_probs=126.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCe-EEEEec---cCCCCeEEEEEcCC---CCEEEEEeC----C----C
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRLATSSA----D----R 624 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~-~~~~l~---~h~~~I~~l~fspd---g~~Latgs~----D----g 624 (842)
-..-.+|+|.|+|++ +++..+|.|++++ .+++ .+..+. ........|+|+|+ +..|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~l-~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRY-LVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEE-EEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeE-EEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345789999999974 4556679999997 4454 222221 22356899999997 555555443 3 5
Q ss_pred eEEEEEcCCCC------cee-eEeec-CccceEEEEEcCCCCcEEEEEeC------------CCcEEEEECCCCc-----
Q 003177 625 TVRVWDTENPD------YSL-RTFTG-HSTTVMSLDFHPSKEDLLCSCDN------------NSEIRYWSINNGS----- 679 (842)
Q Consensus 625 ~I~IWDl~t~~------~~i-~~~~~-h~~~V~sl~fspdg~~llasgs~------------Dg~I~vwDl~t~~----- 679 (842)
.|..|+..... ..+ ..+.. .......|+|.|+|..++..++. .|.|..++....-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 78888876531 111 11221 11234679999998644433321 2456666654210
Q ss_pred --eeeEEe-ecCCeeEEEEeCCCCEEEEEEcCC----eEEEEECCC----------------CeEEEEEeCCCCCEEEEE
Q 003177 680 --CAGVFK-CQSGATQMRFQPRLGRILAAAIEN----YISILDVET----------------QVCRLKLQGHKNQVHSVC 736 (842)
Q Consensus 680 --~i~~~~-~~~~i~~v~~sp~g~~l~~~s~dg----~I~IwDl~t----------------~~~~~~l~~h~~~V~sl~ 736 (842)
....+. .......++|+|+.+.|+++.... .|.+..... ..++..+.........++
T Consensus 186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 011222 234467899999545555555432 244433211 012223311234577888
Q ss_pred Ec-------CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEE
Q 003177 737 WN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVI 791 (842)
Q Consensus 737 ~s-------pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv~~spdg~~L~sg 791 (842)
|. .+|.++++.. .+.|...++...........+ ......+..+++.|||..+++.
T Consensus 266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 84 4666666554 678888888753211112222 2234678899999999644443
No 299
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.90 E-value=0.019 Score=61.36 Aligned_cols=233 Identities=12% Similarity=0.180 Sum_probs=155.2
Q ss_pred EEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCc
Q 003177 566 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 645 (842)
Q Consensus 566 v~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~ 645 (842)
.-.+|..+.||.=. ...+.|||+++...+..+.-. ..|..=+|-.+ +.|+..+ +..|+-|+++....+.+.+..|.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 34578788887766 678999999999888887644 56777778754 3455443 45799999987667777777764
Q ss_pred ----cceEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCceeeEEeecCCeeEE-EEeCCC----CEEEEEEc---
Q 003177 646 ----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQM-RFQPRL----GRILAAAI--- 707 (842)
Q Consensus 646 ----~~V~sl~fspdg~~llasgs------~Dg~I~vwDl~t~~~i~~~~~~~~i~~v-~~sp~g----~~l~~~s~--- 707 (842)
..|.....+++.+.++++|- -.|.+.+|..+.+. ...+. +...+. .+-.++ ..+++-..
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~ 224 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE--GHAASFAQFKMEGNAEESTLFCFAVRGQ 224 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEEC--CSEEEEEEECCTTCSSCEEEEEEEEEET
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceee--eeeeeeEEEecCCCCCCceEEEEEEecC
Confidence 45777778888888877663 24678888887543 22222 111111 111111 12333222
Q ss_pred -CCeEEEEECCCC--------e-EEEEEeC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC
Q 003177 708 -ENYISILDVETQ--------V-CRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 773 (842)
Q Consensus 708 -dg~I~IwDl~t~--------~-~~~~l~~---h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~ 773 (842)
.+.++|.++... + .+..+.. -.+-..++..++.-..++.-+ -|.|++||+.++ .++..-+...
T Consensus 225 ~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg---t~i~~nrIS~ 301 (365)
T 2xzh_A 225 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISG 301 (365)
T ss_dssp TEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCS
T ss_pred CCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC---cEEEEeccCC
Confidence 258899988532 1 1111111 234456778888777777777 999999999999 7888887778
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 774 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 774 ~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
..|...+.+....-+++....|.|.-..+++..++
T Consensus 302 d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 302 ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp SCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred CceEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 88877777766666777788888877777665544
No 300
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.90 E-value=0.0027 Score=68.33 Aligned_cols=198 Identities=10% Similarity=0.119 Sum_probs=123.0
Q ss_pred CCCeEEEEEcCCCCEEEEEE-CCCcEEEEecCCCeEEEE-ecc----CC--CCeEEEEE---cCCCCEEEEEe-------
Q 003177 560 TSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKST-LEE----HT--QWITDVRF---SPSLSRLATSS------- 621 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs-~Dg~I~vwd~~t~~~~~~-l~~----h~--~~I~~l~f---spdg~~Latgs------- 621 (842)
.---.|++|.+....|..++ ..++|..||...+..... +.+ .. ..+..|.| .++++++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 33345789988555655555 789999999876544333 322 11 13689999 58877777544
Q ss_pred ------CCCeEEEEEcC---CCCceee-EeecCc-----------cceEEEEEcCCCCcEEEEEeCC-CcEEEEECCCCc
Q 003177 622 ------ADRTVRVWDTE---NPDYSLR-TFTGHS-----------TTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGS 679 (842)
Q Consensus 622 ------~Dg~I~IWDl~---t~~~~i~-~~~~h~-----------~~V~sl~fspdg~~llasgs~D-g~I~vwDl~t~~ 679 (842)
.+..|..||+. +++.... .+.... .....++..++|+.++ +++.. +.|..++....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYV-t~s~~~~~I~rV~pdG~- 169 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYV-AFALGMPAIARVSADGK- 169 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEE-EEEESSCEEEEECTTSC-
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEE-eCCCCCCeEEEEeCCCC-
Confidence 26789999998 5553222 121111 2478999999988544 67667 77777777643
Q ss_pred eeeEEee-------cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-EEEEe--CC---CCCEEEE-EEcCCCCEEE
Q 003177 680 CAGVFKC-------QSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQ--GH---KNQVHSV-CWNTSGEYLA 745 (842)
Q Consensus 680 ~i~~~~~-------~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~-~~~l~--~h---~~~V~sl-~~spdg~~La 745 (842)
.+..+.. ....+.|+++|++..|++....+.|..+|+.+... ..... +. -.....| ....+|+.|+
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll 249 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL 249 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence 2332221 12367999999999999988899999999885432 01111 21 1223443 3334777755
Q ss_pred EEe--CCeEEEEEcCC
Q 003177 746 SVS--DELVRVWSIGS 759 (842)
Q Consensus 746 sgs--Dg~I~IwDl~s 759 (842)
++. .+.+.+.+...
T Consensus 250 V~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 250 VGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEETTEEEEEECSST
T ss_pred EEcCCCCEEEEECCCC
Confidence 554 55555555444
No 301
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.89 E-value=0.019 Score=69.14 Aligned_cols=264 Identities=11% Similarity=0.081 Sum_probs=155.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceee
Q 003177 560 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 639 (842)
Q Consensus 560 ~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~ 639 (842)
...|.++....+| .|.+|+.+| +.+||..+.+...........|.++... ++ .|..++.+ -|..||..+.. +.
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~--~~ 134 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRK--LT 134 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCC--EE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCe--EE
Confidence 3568898887776 566666654 8899988765433111123457777653 44 56666666 58888887644 23
Q ss_pred Eee-----cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee------cCCeeEEEEeCCCCEEEEEEcC
Q 003177 640 TFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIE 708 (842)
Q Consensus 640 ~~~-----~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~------~~~i~~v~~sp~g~~l~~~s~d 708 (842)
.+. .....|.++....++...+ +.. +-|..+|..+++....... ...|.++....+++.|.+++.
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g~lWi--gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDNQIYV--GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTCCEEE--EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred EeccCCCCcCCCeEEEEEEcCCCCEEE--EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 331 1234688888877765333 443 4578888877654321111 123777887777776666664
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-----ecCCCceEEEEEeC
Q 003177 709 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHP 783 (842)
Q Consensus 709 g~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~-----~~~~~~I~sv~~sp 783 (842)
+.|..||..+++...........|.++....+|.+.+.. ++-|.+++..+... ..+... ......|.++....
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 578899988765432211123458888888888877655 55688888766421 111100 01234688888888
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-eEEEEc-----cCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 003177 784 TFPSLLVIGCYETLELWNMTEN-KTLTLS-----AHDKLVSSLAASTVNGMVASASHDKCVK 839 (842)
Q Consensus 784 dg~~L~sgs~dg~I~Iwdl~~~-~~~~~~-----~h~~~V~sla~spdg~~Lasgs~DG~V~ 839 (842)
+|. |.+|+..| |.++..... +..... .....|.++....+|.+.+. +.+|.++
T Consensus 289 ~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~~ 347 (758)
T 3ott_A 289 EHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLIR 347 (758)
T ss_dssp TCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEEE
T ss_pred CCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCccee
Confidence 776 66677666 555443221 111111 12346888888777776554 4556443
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.88 E-value=0.002 Score=70.44 Aligned_cols=195 Identities=8% Similarity=0.040 Sum_probs=112.4
Q ss_pred CeEEEEEcCCCCEEEEE------------eCCCeEEEEEcCCCCceee--Eeec-----CccceEEEEEcC--CCC-cEE
Q 003177 604 WITDVRFSPSLSRLATS------------SADRTVRVWDTENPDYSLR--TFTG-----HSTTVMSLDFHP--SKE-DLL 661 (842)
Q Consensus 604 ~I~~l~fspdg~~Latg------------s~Dg~I~IWDl~t~~~~i~--~~~~-----h~~~V~sl~fsp--dg~-~ll 661 (842)
...++...++|..++++ ..+|.|.++|+++...... .+.+ .......|.+.+ ++. +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34556666665444443 2689999999974322122 2222 224567777766 344 344
Q ss_pred EEEeC--CCcEEEEECCCC-ceee---EEee--cCCeeEEEEeCCCCEEEEEEc-----------------CCeEEEEEC
Q 003177 662 CSCDN--NSEIRYWSINNG-SCAG---VFKC--QSGATQMRFQPRLGRILAAAI-----------------ENYISILDV 716 (842)
Q Consensus 662 asgs~--Dg~I~vwDl~t~-~~i~---~~~~--~~~i~~v~~sp~g~~l~~~s~-----------------dg~I~IwDl 716 (842)
++-.. +..|.+|++... .... .+.. -...+.+.+.++|.++++... .|.|+.||.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 467778777543 2222 2222 234788999999876665431 256666666
Q ss_pred CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-CCCEEEEEEc
Q 003177 717 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGC 793 (842)
Q Consensus 717 ~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~sp-dg~~L~sgs~ 793 (842)
..-+ .... .-...+.++|+||++.|+.+. .+.|..|++...........+ ........+++.+ +|.+.+++..
T Consensus 211 ~~~~--~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 211 NDVR--VVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp TCCE--EEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred CeEE--Eeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 4222 2222 234568999999999888877 779999999743222223334 2356678899999 5886665554
Q ss_pred CC-eEEEEEC
Q 003177 794 YE-TLELWNM 802 (842)
Q Consensus 794 dg-~I~Iwdl 802 (842)
++ .|..|+.
T Consensus 287 ~g~~v~~~~P 296 (355)
T 3sre_A 287 NGMRIFFYDA 296 (355)
T ss_dssp CHHHHHSCCT
T ss_pred CceEEEEECC
Confidence 43 4444443
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.87 E-value=0.0035 Score=68.56 Aligned_cols=225 Identities=12% Similarity=0.071 Sum_probs=123.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-eeeEe---ecCccceEEEEEcCC---CCcEEEEEeCC-----Cc
Q 003177 602 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDNN-----SE 669 (842)
Q Consensus 602 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~-~i~~~---~~h~~~V~sl~fspd---g~~llasgs~D-----g~ 669 (842)
-.....++|.|++++++ +..+|.|++++ . +.. .+..+ .........|+|+|+ +..++++.... +.
T Consensus 30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLI-AERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEE-EETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEE-EeCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34578999999998554 45679999998 3 221 11111 112356889999998 55565554433 67
Q ss_pred EEEEECCCCce-----e-eEEee----cCCeeEEEEeCCCCEEEEEEc-------------CCeEEEEECCCC-------
Q 003177 670 IRYWSINNGSC-----A-GVFKC----QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ------- 719 (842)
Q Consensus 670 I~vwDl~t~~~-----i-~~~~~----~~~i~~v~~sp~g~~l~~~s~-------------dg~I~IwDl~t~------- 719 (842)
|..|+...+.. + ..+.. ......++|.|++..+++.+. .|.|..+|....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 88888775421 1 11221 112468999999866555432 156766766531
Q ss_pred -------eEEEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeE------EEEEcCCCCC---------------ceeEEEe
Q 003177 720 -------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELV------RVWSIGSGSK---------------GECIHEL 769 (842)
Q Consensus 720 -------~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs-Dg~I------~IwDl~s~~~---------------~~~i~~~ 769 (842)
..+.. .++ .....++|+| ++.++++-. .+.+ .|.-+..+.. ...+..+
T Consensus 187 ~~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 187 LGRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TTCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred cCCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 11111 123 2356789999 666666544 2221 2333333220 0122222
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe-------EEEEccCCCCeeEEEEeCCCCEEEEEe
Q 003177 770 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-------TLTLSAHDKLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 770 ~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~-------~~~~~~h~~~V~sla~spdg~~Lasgs 833 (842)
. .......++| .++..+++.-..+.|...++.... ...+......+.++++.|||.++++..
T Consensus 265 ~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 P-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp T-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred C-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 1 2234556777 355444433344578777765432 122223346789999999998777664
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.87 E-value=0.027 Score=60.20 Aligned_cols=247 Identities=9% Similarity=0.152 Sum_probs=150.0
Q ss_pred CCcEEEEecCCCeEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCc
Q 003177 581 DKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 659 (842)
Q Consensus 581 Dg~I~vwd~~t~~~~~~-l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~ 659 (842)
+..|.|.|+.+...+.+ --.-+ +.-.+|..+.||.-. ..++.|+|+++..+ ++.+.- ...|.-=.|-.+.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~k-lks~~~-~e~VvfWkWis~~-- 118 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLN-- 118 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEE-EEEEEC-SSCEEEEEECSSS--
T ss_pred CCEEEEEECCCCCCccccccccc----eeeeCCCccEEEEec-CCeEEEechHHhhh-hcceec-CCccEEEEecCCC--
Confidence 34788889887543322 11112 334578877777665 67899999998553 555443 3567767776553
Q ss_pred EEEEEeCCCcEEEEECCC-CceeeEEee-----cCCeeEEEEeCCCCEEEEEEc-------CCeEEEEECCCCeEEEEEe
Q 003177 660 LLCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQ 726 (842)
Q Consensus 660 llasgs~Dg~I~vwDl~t-~~~i~~~~~-----~~~i~~v~~sp~g~~l~~~s~-------dg~I~IwDl~t~~~~~~l~ 726 (842)
.|+..+ +..|+.|++.. ..+.+.+.. ...|.....+++.++++..+- .|.+.+|..+.+.. ..+.
T Consensus 119 ~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ie 196 (365)
T 2xzh_A 119 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE 196 (365)
T ss_dssp EEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEEC
T ss_pred eEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-ceee
Confidence 333333 67899999974 355666654 334777788899998776653 36788999886543 3456
Q ss_pred CCCCCEEEEEEcCC---CCEEEEEe----CCeEEEEEcCCC---CC---ceeEEEeec---CCCceEEEEEeCCCCEEEE
Q 003177 727 GHKNQVHSVCWNTS---GEYLASVS----DELVRVWSIGSG---SK---GECIHELSC---TGNKFHSCVFHPTFPSLLV 790 (842)
Q Consensus 727 ~h~~~V~sl~~spd---g~~Lasgs----Dg~I~IwDl~s~---~~---~~~i~~~~~---~~~~I~sv~~spdg~~L~s 790 (842)
+|......+.+..+ ..+++.+. .++++|.++... .. .+.+..+-. ..+-..++.+++....++.
T Consensus 197 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyv 276 (365)
T 2xzh_A 197 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 276 (365)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEE
Confidence 66544333332211 12334333 258999998543 11 112222221 2344577889999999999
Q ss_pred EEcCCeEEEEECCCCeEEE-EccCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 003177 791 IGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCV 838 (842)
Q Consensus 791 gs~dg~I~Iwdl~~~~~~~-~~~h~~~V~sla~spdg~~Lasgs~DG~V 838 (842)
.+..|.|++||+.++.++. ..-....|..-+-+....=++.....|.|
T Consensus 277 iTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 325 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEE
T ss_pred EeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEE
Confidence 9999999999999999883 33334444444433332223333455544
No 305
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.85 E-value=0.065 Score=67.62 Aligned_cols=272 Identities=9% Similarity=0.010 Sum_probs=152.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCc-e
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDY-S 637 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~t~~~-~ 637 (842)
.+|.=..|...|..-+.+..+.-..+|... ++...+--.-...-....|+.. ..-++..+ ++.++|..+++-.. .
T Consensus 652 ~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~ 729 (1158)
T 3ei3_A 652 QPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLH 729 (1158)
T ss_dssp SCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEE
T ss_pred CceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCee
Confidence 344444444444433333344555555433 3332221111122234445432 23454443 45689888764332 2
Q ss_pred eeEeecCccceEEEEEcCCCCcEEEEEeC------------------------------------------------CCc
Q 003177 638 LRTFTGHSTTVMSLDFHPSKEDLLCSCDN------------------------------------------------NSE 669 (842)
Q Consensus 638 i~~~~~h~~~V~sl~fspdg~~llasgs~------------------------------------------------Dg~ 669 (842)
++.+. -...+..++++|..+.+++.++. -+.
T Consensus 730 ~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 808 (1158)
T 3ei3_A 730 IRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHN 808 (1158)
T ss_dssp EEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEE
T ss_pred EEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEE
Confidence 23222 34567788888876654443321 124
Q ss_pred EEEEECCCCceeeEEeecC--CeeEEEEe---C-CCCEEEEEE----------cCCeEEEEECCCCeEEEEE-eCCCCCE
Q 003177 670 IRYWSINNGSCAGVFKCQS--GATQMRFQ---P-RLGRILAAA----------IENYISILDVETQVCRLKL-QGHKNQV 732 (842)
Q Consensus 670 I~vwDl~t~~~i~~~~~~~--~i~~v~~s---p-~g~~l~~~s----------~dg~I~IwDl~t~~~~~~l-~~h~~~V 732 (842)
|+++|..+.+.+..+.... .+.+++.. . ...++++|+ ..|.|++|++..++..... ...++.|
T Consensus 809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v 888 (1158)
T 3ei3_A 809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAV 888 (1158)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCE
T ss_pred EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcC
Confidence 7778877777776666533 24444432 2 246777777 2478999998755332221 2256788
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEEE
Q 003177 733 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTL 810 (842)
Q Consensus 733 ~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iw--dl~~~~~~~~ 810 (842)
++++-- +| +|+++-..+|++|++....... ...... ..|..+.....+++|++|..-..|.++ +...++...+
T Consensus 889 ~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~--~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~ 963 (1158)
T 3ei3_A 889 YSMVEF-NG-KLLASINSTVRLYEWTTEKELR--TECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI 963 (1158)
T ss_dssp EEEEEE-TT-EEEEEETTEEEEEEECTTSCEE--EEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred EEEeee-CC-EEEEEcCCEEEEEECCCCceEE--EEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence 888754 34 6666778899999998653212 111111 123333444457789999988866664 5556665543
Q ss_pred c--cCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 811 S--AHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 811 ~--~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
. .+...++++.+-.+ ..++.+..+|.|.+.
T Consensus 964 a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 964 ARDFNPNWMSAVEILDD-DNFLGAENAFNLFVC 995 (1158)
T ss_dssp EECCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred EeecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence 3 45667888888755 467778999998875
No 306
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.83 E-value=0.0035 Score=68.05 Aligned_cols=179 Identities=10% Similarity=0.159 Sum_probs=119.0
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCC----CC---EEEEEEc---CCeEEEEEC--CCCeEEEEEeC
Q 003177 660 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LG---RILAAAI---ENYISILDV--ETQVCRLKLQG 727 (842)
Q Consensus 660 llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~----g~---~l~~~s~---dg~I~IwDl--~t~~~~~~l~~ 727 (842)
+++.....+-|.+||+ +|+.+..+.. +.++.+.+-|. +. .+++... ++.|.+|++ .++. +..+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccc
Confidence 4556677889999999 7888888765 66777777663 22 2333333 478999976 3443 444321
Q ss_pred ------CC-CCEEEEEE--cCC-CC-EEEEEe-CCeEEEEEcCCC----CCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003177 728 ------HK-NQVHSVCW--NTS-GE-YLASVS-DELVRVWSIGSG----SKGECIHELSCTGNKFHSCVFHPTFPSLLVI 791 (842)
Q Consensus 728 ------h~-~~V~sl~~--spd-g~-~Lasgs-Dg~I~IwDl~s~----~~~~~i~~~~~~~~~I~sv~~spdg~~L~sg 791 (842)
.. ..+..+|+ ++. +. ++++.. +|.+..|++... ...+.++++.. ...+..|++.+....|+++
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~ 197 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIA 197 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEe
Confidence 11 45667887 674 54 455555 899999998432 12345666664 5688999999999999999
Q ss_pred EcCCeEEEEECC-----CCeEEEEccC---CCCeeEEEEe--CCCC-EEEEEe-CCCcEEEcC
Q 003177 792 GCYETLELWNMT-----ENKTLTLSAH---DKLVSSLAAS--TVNG-MVASAS-HDKCVKIWK 842 (842)
Q Consensus 792 s~dg~I~Iwdl~-----~~~~~~~~~h---~~~V~sla~s--pdg~-~Lasgs-~DG~V~IWd 842 (842)
-.+..|..|+.+ +++.+...+. ...+..|++- ++++ +|++++ .+..+.|||
T Consensus 198 eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 198 EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp ETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred cccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 999888888865 3455544322 2468888884 4555 666665 566777775
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.81 E-value=0.0061 Score=66.70 Aligned_cols=226 Identities=12% Similarity=0.064 Sum_probs=129.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEe---ecCccceEEEEEcCC---CCcEEEEEeC---C----C
Q 003177 602 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDN---N----S 668 (842)
Q Consensus 602 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~---~~h~~~V~sl~fspd---g~~llasgs~---D----g 668 (842)
-.....++|.|+++ |+++..+|.|+++|.+ +...+..+ .........|+|+|+ +..++++... + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 35578999999997 5555567999999743 32122211 112346889999997 5555555442 3 5
Q ss_pred cEEEEECCCC--c---e--e-eEEee--cCCeeEEEEeCCCCEEEEEEc-------------CCeEEEEECCCC------
Q 003177 669 EIRYWSINNG--S---C--A-GVFKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ------ 719 (842)
Q Consensus 669 ~I~vwDl~t~--~---~--i-~~~~~--~~~i~~v~~sp~g~~l~~~s~-------------dg~I~IwDl~t~------ 719 (842)
.|..|+.... . . + ..+.. ......++|.|++..+++.+. .|.|..++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6778887654 1 1 1 11221 112467999999876665432 246666666532
Q ss_pred ---eEEEEEeCCCCCEEEEEEcC-CCCEEEEEe--CC--eEEEEEcCCCCC---------------ceeEEEeecCCCce
Q 003177 720 ---VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DE--LVRVWSIGSGSK---------------GECIHELSCTGNKF 776 (842)
Q Consensus 720 ---~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs--Dg--~I~IwDl~s~~~---------------~~~i~~~~~~~~~I 776 (842)
..+. ..++. ....++|+| ++.++++-. +. .|.+.. .+.. ...+..+.......
T Consensus 186 f~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 186 FPNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp STTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred CCCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 1122 22343 346899999 677666544 22 344432 2210 01222221223456
Q ss_pred EEEEEe-------CCCCEEEEEEcCCeEEEEECCCC-eEE---EEc-cCCCCeeEEEEeCCCCEEEEEe
Q 003177 777 HSCVFH-------PTFPSLLVIGCYETLELWNMTEN-KTL---TLS-AHDKLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 777 ~sv~~s-------pdg~~L~sgs~dg~I~Iwdl~~~-~~~---~~~-~h~~~V~sla~spdg~~Lasgs 833 (842)
..++|. .++.++++.-..+.|..+++... +.. .+. .....+..|++.|||.++++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 777873 45654444445568888888753 332 232 2246789999999998777664
No 308
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.78 E-value=0.0042 Score=67.96 Aligned_cols=233 Identities=8% Similarity=0.061 Sum_probs=127.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-eee----EeecCccceEEEEEcCC---CCcEEEEEeC-------C
Q 003177 603 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLR----TFTGHSTTVMSLDFHPS---KEDLLCSCDN-------N 667 (842)
Q Consensus 603 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~-~i~----~~~~h~~~V~sl~fspd---g~~llasgs~-------D 667 (842)
.....|+|.|+++.|+++...|.|++++.+.... .+. .+.........|+|+|+ +..++++-.. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 4578999999998444556789999998542110 011 11112345789999996 4555555432 2
Q ss_pred CcEEEEECCCC--c--eee-EEee-c------CCeeEEEEeCCCCEEEEEEc-------------CCeEEEEECCCC---
Q 003177 668 SEIRYWSINNG--S--CAG-VFKC-Q------SGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ--- 719 (842)
Q Consensus 668 g~I~vwDl~t~--~--~i~-~~~~-~------~~i~~v~~sp~g~~l~~~s~-------------dg~I~IwDl~t~--- 719 (842)
..|..|++... . ... .+.. . .....++|.|++..+++.+. .|.|.-+|....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35777776543 1 111 1111 1 11457999999854444433 246777776532
Q ss_pred -----------eEEEEEeCCCCCEEEEEEcC-CCCEEEEEe--CCeEEEEEcCCCCC-----------------------
Q 003177 720 -----------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DELVRVWSIGSGSK----------------------- 762 (842)
Q Consensus 720 -----------~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs--Dg~I~IwDl~s~~~----------------------- 762 (842)
..+.. .+| .....++|+| +|.++++-. ++.=.|.-+..+..
T Consensus 178 ~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 11111 233 3467899999 566555433 22223332222211
Q ss_pred -----ceeEEEeecCCCceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCeEE---EEc-cCCCCeeEEEEeCCC
Q 003177 763 -----GECIHELSCTGNKFHSCVFHP-------TFPSLLVIGCYETLELWNMTENKTL---TLS-AHDKLVSSLAASTVN 826 (842)
Q Consensus 763 -----~~~i~~~~~~~~~I~sv~~sp-------dg~~L~sgs~dg~I~Iwdl~~~~~~---~~~-~h~~~V~sla~spdg 826 (842)
...+..+. +...+..++|.. ++.++++.-..+.|..+++..++.+ .+. .....+..|++.|||
T Consensus 256 ~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG 334 (353)
T 2g8s_A 256 IVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG 334 (353)
T ss_dssp SCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred CCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence 01111122 123456677764 3555554445668888888776544 222 234579999999999
Q ss_pred CEEEEEe-CCCcE
Q 003177 827 GMVASAS-HDKCV 838 (842)
Q Consensus 827 ~~Lasgs-~DG~V 838 (842)
.++++.. .+|.|
T Consensus 335 ~lyv~td~~~g~I 347 (353)
T 2g8s_A 335 YLYVLTDESSGEL 347 (353)
T ss_dssp CEEEEECSTTEEE
T ss_pred cEEEEEeCCCCEE
Confidence 9776544 45554
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.76 E-value=0.04 Score=61.06 Aligned_cols=234 Identities=13% Similarity=0.185 Sum_probs=155.1
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecC
Q 003177 565 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 644 (842)
Q Consensus 565 sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h 644 (842)
+.-.+|..+.||.=. ..++.|||+++...+..+.-.+ .|..=+|-.+ +.|+..+ +..|+-|+++....+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecc
Confidence 344567777777665 6799999999999888876554 4555566543 3555553 5689999998766777777776
Q ss_pred c----cceEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCceeeEEeecCCeeEE-EEeCCC----CEEEEEEc--
Q 003177 645 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQM-RFQPRL----GRILAAAI-- 707 (842)
Q Consensus 645 ~----~~V~sl~fspdg~~llasgs------~Dg~I~vwDl~t~~~i~~~~~~~~i~~v-~~sp~g----~~l~~~s~-- 707 (842)
. ..|.....+++.++++++|= -.|.+.+|..+.+.. ..+.. ...+. .+-.++ ..+++-..
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEG--HAASFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECC--SEEEEEEEECTTCSSEEEEEEEEECS
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chhee--eeeeeEEEecCCCCCCceEEEEEEec
Confidence 4 45777788889888877663 246788898875432 22221 11111 111111 12333332
Q ss_pred --CCeEEEEECCCC--------eEEEE-EeC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003177 708 --ENYISILDVETQ--------VCRLK-LQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 772 (842)
Q Consensus 708 --dg~I~IwDl~t~--------~~~~~-l~~---h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 772 (842)
.+.++|.++... +.... +.. -.+-..++..++.-..++..+ -|.|++||+.++ .++..-+..
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs 299 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRIS 299 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeeccc
Confidence 278999998542 11111 111 234456788888777777777 999999999999 788887777
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 773 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 773 ~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
...|...+.+....-+++....|.|.-..+++..++
T Consensus 300 ~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred CCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 888877777777777888888888877777665544
No 310
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.76 E-value=0.066 Score=64.46 Aligned_cols=266 Identities=8% Similarity=0.045 Sum_probs=155.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEe-cc----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EE----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 635 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l-~~----h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~ 635 (842)
..|.++....+|.+.+ |+.+ -|..|+..+.+..... .. ....|.++....++..|..|+. +-|..+|..+..
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred CeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence 4688998888887655 4544 5888888776543221 11 1234888888877766555654 458888877643
Q ss_pred ceeeEee-cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee--------cCCeeEEEEeCCCCEEEEEE
Q 003177 636 YSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAA 706 (842)
Q Consensus 636 ~~i~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--------~~~i~~v~~sp~g~~l~~~s 706 (842)
. ..+. .....|.++....++... .|+. +-|.+++..+++....... ...|.++....++. |.+|+
T Consensus 223 ~--~~~~~l~~~~i~~i~~d~~g~lW--igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT 296 (758)
T 3ott_A 223 I--KQTEAFHNNSIKSLALDGNGDLL--AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGT 296 (758)
T ss_dssp E--EEEEEEEEEEEEEEEECTTCCEE--EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEE
T ss_pred E--EeccCCCCCeEEEEEEcCCCCEE--EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEe
Confidence 2 2111 123468888887776533 3443 4588888876654322211 23477787777655 44555
Q ss_pred cCCeEEEEECCCCeEEEEEe-----CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee-------cCCC
Q 003177 707 IENYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-------CTGN 774 (842)
Q Consensus 707 ~dg~I~IwDl~t~~~~~~l~-----~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~-------~~~~ 774 (842)
..| +.++............ .....|.++.-+.+|.+.+.. ++-+..++..++.... +..+. ....
T Consensus 297 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 373 (758)
T 3ott_A 297 DYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHD-AIWYRMGDKTYPLSHN 373 (758)
T ss_dssp SSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCC-CEEECTTCSSSCCSCS
T ss_pred CCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEee-CCcceeecccccccce-eEEeccCCcCCCCCCC
Confidence 556 5555432211111111 123468899988888877654 3456677655432111 11111 1234
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc--c-----CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 775 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS--A-----HDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 775 ~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~~~--~-----h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
.|.++....++. |.+|+ ++-|..||..+++...+. . ....|.++....++.+.+ |+..+-|.+|
T Consensus 374 ~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~ 444 (758)
T 3ott_A 374 RIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVV 444 (758)
T ss_dssp CEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEE
T ss_pred ceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEE
Confidence 588888888876 55666 457999999888765432 1 234588888777776544 5554445444
No 311
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.75 E-value=0.0071 Score=65.08 Aligned_cols=208 Identities=10% Similarity=0.049 Sum_probs=132.3
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeeEeec----C--ccceEEEEE---cCCCCcEEEEEe--
Q 003177 598 LEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG----H--STTVMSLDF---HPSKEDLLCSCD-- 665 (842)
Q Consensus 598 l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~t~~~~i~~~~~----h--~~~V~sl~f---spdg~~llasgs-- 665 (842)
+........+++|.+....|+.++ ..++|..||...+......+.+ . ...+..|.| .|+ ..++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccc
Confidence 444445566899988656666666 7999999999754432222221 1 114689999 687 44555443
Q ss_pred -----------CCCcEEEEECC---CCceeeEEeec--------------CCeeEEEEeCCCCEEEEEEcC-CeEEEEEC
Q 003177 666 -----------NNSEIRYWSIN---NGSCAGVFKCQ--------------SGATQMRFQPRLGRILAAAIE-NYISILDV 716 (842)
Q Consensus 666 -----------~Dg~I~vwDl~---t~~~i~~~~~~--------------~~i~~v~~sp~g~~l~~~s~d-g~I~IwDl 716 (842)
.+..|..||+. +++.+...... .....++..++|+.+++.+.. +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 26789999999 88877666531 247899999999999999998 99988888
Q ss_pred CCCeEEEEE-eC----CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-c---CCCceEE-EEEeCCC
Q 003177 717 ETQVCRLKL-QG----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-C---TGNKFHS-CVFHPTF 785 (842)
Q Consensus 717 ~t~~~~~~l-~~----h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-~---~~~~I~s-v~~spdg 785 (842)
.......-+ .. .....+.|+++|+|..|++.. .+.|..+|+...... .+..-. + ....... +..-.+|
T Consensus 167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G 245 (334)
T 2p9w_A 167 DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGN 245 (334)
T ss_dssp TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETT
T ss_pred CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCC
Confidence 755322211 11 122367999999999888887 889999999843110 122110 1 1122344 3444577
Q ss_pred CEEEEEEc-CCeEEEEECCCCeE
Q 003177 786 PSLLVIGC-YETLELWNMTENKT 807 (842)
Q Consensus 786 ~~L~sgs~-dg~I~Iwdl~~~~~ 807 (842)
+.|+++.. .+.+.+.+.+..+.
T Consensus 246 ~vllV~~~~~~~~~l~S~DgW~s 268 (334)
T 2p9w_A 246 ESVLVGARAPYAISFRSWDNWKS 268 (334)
T ss_dssp EEEEEEEETTEEEEEECSSTTSE
T ss_pred EEEEEEcCCCCEEEEECCCCcce
Confidence 77555554 55566666555443
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.73 E-value=0.096 Score=58.04 Aligned_cols=246 Identities=9% Similarity=0.160 Sum_probs=150.7
Q ss_pred CCcEEEEecCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCC
Q 003177 581 DKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 658 (842)
Q Consensus 581 Dg~I~vwd~~t~~~~~--~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~ 658 (842)
+..|.|.|+.+...+. .+. - -+.-.+|..+.||.-. ..++.|||+++..+ ++.+.-. ..|.-=.|-.+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~-A----dsAIMnP~~~iiALra-g~~lQiFnle~K~k-lks~~~~-e~VvfWkWis~~- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS-A----DSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTMT-DDVTFWKWISLN- 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC-C----SEEEECSSSSCEEEEE-TTEEEEEETTTTEE-EEEEECS-SCCCEEEEEETT-
T ss_pred CCeEEEEECCCCCcceecccc-c----ceeeeCCCCcEEEEec-CCeEEEEchHHhhh-hcceecC-CCceEEEecCCC-
Confidence 3478888888754332 222 1 1344677777777665 77999999998553 5555533 455555665442
Q ss_pred cEEEEEeCCCcEEEEECCC-CceeeEEee-----cCCeeEEEEeCCCCEEEEEEc-------CCeEEEEECCCCeEEEEE
Q 003177 659 DLLCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKL 725 (842)
Q Consensus 659 ~llasgs~Dg~I~vwDl~t-~~~i~~~~~-----~~~i~~v~~sp~g~~l~~~s~-------dg~I~IwDl~t~~~~~~l 725 (842)
.|+..+ +..|+.|++.. ..+.+.|.. ...|.....+++.++++..+- .|.+.+|..+.+. -..+
T Consensus 118 -~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~i 194 (494)
T 1bpo_A 118 -TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPI 194 (494)
T ss_dssp -EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEE
T ss_pred -eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchh
Confidence 343333 67899999974 345666654 334777888999999776553 3678899988653 3345
Q ss_pred eCCCCCEEEEEEcCCC---CEEEEEe----CCeEEEEEcCCCC---C---ceeEEEeec---CCCceEEEEEeCCCCEEE
Q 003177 726 QGHKNQVHSVCWNTSG---EYLASVS----DELVRVWSIGSGS---K---GECIHELSC---TGNKFHSCVFHPTFPSLL 789 (842)
Q Consensus 726 ~~h~~~V~sl~~spdg---~~Lasgs----Dg~I~IwDl~s~~---~---~~~i~~~~~---~~~~I~sv~~spdg~~L~ 789 (842)
.+|......+.+..+. .+++.+. .++++|.++.... . .+.+..+-. ..+-..++.+++....++
T Consensus 195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy 274 (494)
T 1bpo_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (494)
T ss_dssp CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence 6675544444332211 2344444 2699999996531 0 111111111 234457788999999999
Q ss_pred EEEcCCeEEEEECCCCeEEE-EccCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 003177 790 VIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCV 838 (842)
Q Consensus 790 sgs~dg~I~Iwdl~~~~~~~-~~~h~~~V~sla~spdg~~Lasgs~DG~V 838 (842)
..+..|.|++||+.++.++. -.-....|..-+-+....=++.....|.|
T Consensus 275 viTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred EEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 99999999999999999883 23334445444444433334444455544
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.68 E-value=0.0031 Score=66.69 Aligned_cols=228 Identities=9% Similarity=0.049 Sum_probs=117.0
Q ss_pred CCCEEEEEE-CC-----CcEEEEecCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCC--
Q 003177 571 DGKLLATGG-HD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD-- 635 (842)
Q Consensus 571 dg~~Lasgs-~D-----g~I~vwd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~t~~-- 635 (842)
++.+++.|+ .+ ..+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445666665 32 4688999887654321 1111111222222 56677777755 468999988765
Q ss_pred -ceee-EeecCccceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCceeeEEeecCC--eeEEEEeCCCCEEEEEE
Q 003177 636 -YSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 706 (842)
Q Consensus 636 -~~i~-~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~~i~~~~~~~~--i~~v~~sp~g~~l~~~s 706 (842)
.... .+.........+.+ + +.+++.|+.+ ..+.+||+.+.+-...-..... -.+++. .++..++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECC
T ss_pred eeEECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECC
Confidence 3211 11111112222222 3 4566666643 3688999987764443322211 122222 2556666666
Q ss_pred cC-----CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCC
Q 003177 707 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG 773 (842)
Q Consensus 707 ~d-----g~I~IwDl~t~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~ 773 (842)
.+ ..+.+||+.+.+-... +........++.+ ++.+++.|+ + ..|.+||+.+.. ...+..+....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS-WTTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-EEEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc-EEECCCCCCcc
Confidence 54 4689999987754332 1111111122222 566666665 3 368999998752 11121111111
Q ss_pred CceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEE
Q 003177 774 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLT 809 (842)
Q Consensus 774 ~~I~sv~~spdg~~L~sgs~d-----g~I~Iwdl~~~~~~~ 809 (842)
.... ++. -++..++.|+.+ ..|.+||+.+.+...
T Consensus 245 ~~~~-~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 245 CYVG-ATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp BSCE-EEE-ETTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred ccee-EEE-ECCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 1122 222 256666666655 368899998877553
No 314
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.68 E-value=0.029 Score=61.02 Aligned_cols=233 Identities=13% Similarity=0.114 Sum_probs=131.9
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce-eeEe----ecCccceEEEEEcCC---CCcEEEEE--eC
Q 003177 597 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTF----TGHSTTVMSLDFHPS---KEDLLCSC--DN 666 (842)
Q Consensus 597 ~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~-i~~~----~~h~~~V~sl~fspd---g~~llasg--s~ 666 (842)
.+...-...+.|+|.||+.++++--..|.|++++..++... +..+ .........|+|+|+ +..++++- ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 34344456889999999987777655899999986554321 1111 123456889999995 34344332 24
Q ss_pred CCcEEEEECCCCc--------eeeEEe---e--cCCeeEEEEeCCCCEEEEEEc-------------CCeEEEEECCCC-
Q 003177 667 NSEIRYWSINNGS--------CAGVFK---C--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ- 719 (842)
Q Consensus 667 Dg~I~vwDl~t~~--------~i~~~~---~--~~~i~~v~~sp~g~~l~~~s~-------------dg~I~IwDl~t~- 719 (842)
++.|.-|.+..+. ....+. . ......+.|.|++..+++.+. .|.|.-++....
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 5567777665421 111111 1 123457999999877776542 356666665532
Q ss_pred --------eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC---------------ceeEEEeecCCC
Q 003177 720 --------VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---------------GECIHELSCTGN 774 (842)
Q Consensus 720 --------~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~---------------~~~i~~~~~~~~ 774 (842)
..+. -.+|. ....++|+|+|.++++-. |+.-.|.-+..+.. ...+..+..+..
T Consensus 186 p~~nPf~~~~i~-a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 186 APGNPFPGSPVY-SYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp CTTCSSTTCCEE-EBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred cCCCCCCCCeEE-eeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 1122 22454 346899999988777644 44333333333221 012222322223
Q ss_pred ceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeE----E-EEccCCCCeeEEEEeCCCCEEEEEe
Q 003177 775 KFHSCVFHPTFPSLLVIGC-YETLELWNMTENKT----L-TLSAHDKLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 775 ~I~sv~~spdg~~L~sgs~-dg~I~Iwdl~~~~~----~-~~~~h~~~V~sla~spdg~~Lasgs 833 (842)
....++|.. +. ++.+.. .+.|..+.+..... . .+.+....+.+|+..|||.++++.+
T Consensus 264 ap~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEET-TE-EEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEEc-Cc-eeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 456667763 43 444444 44676667655432 2 2334457899999999998777654
No 315
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.64 E-value=0.0079 Score=65.74 Aligned_cols=226 Identities=14% Similarity=0.085 Sum_probs=123.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEe-------ccCCCCeEEEEEcCC---CCEEEEEe-C-------C
Q 003177 562 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPS---LSRLATSS-A-------D 623 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l-------~~h~~~I~~l~fspd---g~~Latgs-~-------D 623 (842)
.-..|+|.|+|+.|+++...|.|++++.. +.....+ .........|+|+|+ +.+|+++. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 46899999999834455678999999853 3322111 122345789999996 45555443 2 2
Q ss_pred CeEEEEEcCCCCce---ee-Eeec------CccceEEEEEcCCCCcEEEEEeC-------------CCcEEEEECCCCc-
Q 003177 624 RTVRVWDTENPDYS---LR-TFTG------HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS- 679 (842)
Q Consensus 624 g~I~IWDl~t~~~~---i~-~~~~------h~~~V~sl~fspdg~~llasgs~-------------Dg~I~vwDl~t~~- 679 (842)
..|..|+++..... .. .+.. .......|+|.|+|. |+++.+. .|.|..++....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 35666776543110 11 1111 111235799999985 4444332 2467777765320
Q ss_pred -----------eeeEEee-cCCeeEEEEeCCCCEEEEEEcCC----eEEEEECC--------C-----------------
Q 003177 680 -----------CAGVFKC-QSGATQMRFQPRLGRILAAAIEN----YISILDVE--------T----------------- 718 (842)
Q Consensus 680 -----------~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg----~I~IwDl~--------t----------------- 718 (842)
....+.. ......++|+|..+.|+++.... .|.+.... .
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 1222222 24477899999656666665432 23221100 0
Q ss_pred ----CeEEEEEeCCCCCEEEEEEcC-------CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003177 719 ----QVCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 786 (842)
Q Consensus 719 ----~~~~~~l~~h~~~V~sl~~sp-------dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~ 786 (842)
..++..+. +...+..++|.. +|.++++.. .+.|...++..+........+......+..+++.|+|.
T Consensus 257 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 257 VAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 01122232 234567788864 466666554 77888888875421111111223345789999999998
Q ss_pred EEEE
Q 003177 787 SLLV 790 (842)
Q Consensus 787 ~L~s 790 (842)
.+++
T Consensus 336 lyv~ 339 (353)
T 2g8s_A 336 LYVL 339 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 316
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.61 E-value=0.064 Score=67.68 Aligned_cols=272 Identities=12% Similarity=0.080 Sum_probs=148.0
Q ss_pred CCCeEEEEEcCC------CCEEEEEEC-CCcEEEEecCCCeEEEEecc-CCCCeEEEEEc--CCCCEEEEEeCCCeEEEE
Q 003177 560 TSKVESCHFSPD------GKLLATGGH-DKKAVLWCTESFTVKSTLEE-HTQWITDVRFS--PSLSRLATSSADRTVRVW 629 (842)
Q Consensus 560 ~~~V~sv~fSpd------g~~Lasgs~-Dg~I~vwd~~t~~~~~~l~~-h~~~I~~l~fs--pdg~~Latgs~Dg~I~IW 629 (842)
.+.|.|+++.+. +.++|+|.. |++|+|+++.+.+.+....- ....+.++++. ....+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 557999999863 469999997 99999999998776644321 12234444443 234578899999998777
Q ss_pred EcCC--CCcee--eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCee-EEEEeCC--CCEE
Q 003177 630 DTEN--PDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPR--LGRI 702 (842)
Q Consensus 630 Dl~t--~~~~i--~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~-~v~~sp~--g~~l 702 (842)
.++. +...- ..+.| ..++.-..|...+..-+++++ +....+|.-+ ++....--....+. ...|+.. .+-+
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~ 709 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSL 709 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEE
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcE
Confidence 6653 22111 12223 344544444444443343444 4444444433 33221111112232 3334332 2334
Q ss_pred EEEEcCCeEEEEECCCC--eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C------------------------------
Q 003177 703 LAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D------------------------------ 749 (842)
Q Consensus 703 ~~~s~dg~I~IwDl~t~--~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D------------------------------ 749 (842)
+. ..++.++|..+.+. -.+.++. -...+..++++|+.+.++.+. +
T Consensus 710 v~-~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1158)
T 3ei3_A 710 AL-ANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK 787 (1158)
T ss_dssp EE-ECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred EE-EcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence 43 34556888776532 3333443 345678888888766544432 1
Q ss_pred -------------------CeEEEEEcCCCCCceeEEEeecCC-CceEEEE---EeCC-CCEEEEEE----------cCC
Q 003177 750 -------------------ELVRVWSIGSGSKGECIHELSCTG-NKFHSCV---FHPT-FPSLLVIG----------CYE 795 (842)
Q Consensus 750 -------------------g~I~IwDl~s~~~~~~i~~~~~~~-~~I~sv~---~spd-g~~L~sgs----------~dg 795 (842)
+.|+++|-.+. +.+..+.-.. ..+.+++ |..+ ..+|++|+ ..|
T Consensus 788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~G 864 (1158)
T 3ei3_A 788 LFSSSTAPHETSFGEEVEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQG 864 (1158)
T ss_dssp CC----------CCCEEEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCE
T ss_pred cccccccCchhhcCCceeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCce
Confidence 12455554444 3333333222 2234443 3222 46888887 246
Q ss_pred eEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 003177 796 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 842 (842)
Q Consensus 796 ~I~Iwdl~~~~~~--~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IWd 842 (842)
.|++|++.++++. .....++.|++++-- .|++|++. ..+|+||+
T Consensus 865 ri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~ 910 (1158)
T 3ei3_A 865 RIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYE 910 (1158)
T ss_dssp EEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEE
T ss_pred EEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEE
Confidence 8999999766544 333557889998754 35444433 46788875
No 317
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.57 E-value=0.00014 Score=87.28 Aligned_cols=213 Identities=8% Similarity=0.015 Sum_probs=127.4
Q ss_pred CCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC----CceeeEEe-ecCCeeEEEEeC
Q 003177 623 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFK-CQSGATQMRFQP 697 (842)
Q Consensus 623 Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t----~~~i~~~~-~~~~i~~v~~sp 697 (842)
.+.|++.++..... ..+......+..|+|++.+..|+++-...+.|+.+++.. ......+. .......+++.+
T Consensus 385 ~~~I~~id~~~~~~--~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECTTSCCE--ECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeCCCCcc--eeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 45688888776442 222223345678999988777776666678999999875 22222221 112355678886
Q ss_pred CCCEEEEEE-cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeEEEeecCC
Q 003177 698 RLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECIHELSCTG 773 (842)
Q Consensus 698 ~g~~l~~~s-~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i~~~~~~~ 773 (842)
.++.|+++. ..+.|.++++........+.........|+++|.+.+|+.+. . +.|.++++..... .. .+...-
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~--l~~~~l 539 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS--LVTENI 539 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CE--ESCSSC
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eE--EEeCCC
Confidence 666665554 468899999886654444433334567889998766555544 3 6788887754321 11 111223
Q ss_pred CceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEcc---CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 774 NKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 774 ~~I~sv~~spdg~~L~sgs~d-g~I~Iwdl~~~~~~~~~~---h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
.....++|++++..|+++... +.|.++++.......+.. .......|++..+ .++++....+.|..+
T Consensus 540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 456789999987777777654 589999997654443332 2233456666543 344444455666654
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.50 E-value=0.015 Score=61.48 Aligned_cols=226 Identities=8% Similarity=0.028 Sum_probs=115.7
Q ss_pred CEEEEEEC--CCcEEEEecCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEEcCCCCceeeE-eec
Q 003177 573 KLLATGGH--DKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRT-FTG 643 (842)
Q Consensus 573 ~~Lasgs~--Dg~I~vwd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D----g~I~IWDl~t~~~~i~~-~~~ 643 (842)
.+++.|+. ...+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+....... +..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 35555654 35789999887654322 1111112222332 56677777754 67889998876532111 111
Q ss_pred CccceEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCceeeEEeecCC--eeEEEEeCCCCEEEEEEc--------
Q 003177 644 HSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI-------- 707 (842)
Q Consensus 644 h~~~V~sl~fspdg~~llasgs~D------g~I~vwDl~t~~~i~~~~~~~~--i~~v~~sp~g~~l~~~s~-------- 707 (842)
.......+.+ ++.+++.|+.+ ..+.+||+.+.+-...-..... -.+++. .++..++.|+.
T Consensus 91 ~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 91 PRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCE
T ss_pred cccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccc
Confidence 1111222222 34566677654 4689999988764433222111 122222 24455555553
Q ss_pred -CCeEEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003177 708 -ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSC 779 (842)
Q Consensus 708 -dg~I~IwDl~t~~~~~~l~~-h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 779 (842)
-..+.+||+.+.+-...-.. ....-.+++.. ++++++.|+ + ..|.+||+.+.. ...+..+.........+
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEE
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEE
Confidence 34588999988743322111 11111122222 566666655 2 368999988752 11111111111122222
Q ss_pred EEeCCCCEEEEEEcC-----CeEEEEECCCCeEE
Q 003177 780 VFHPTFPSLLVIGCY-----ETLELWNMTENKTL 808 (842)
Q Consensus 780 ~~spdg~~L~sgs~d-----g~I~Iwdl~~~~~~ 808 (842)
.+ ++..+++|+.+ ..|.+||+.+.+..
T Consensus 245 ~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 245 AV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred EE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 33 56666777644 47999999988755
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.49 E-value=0.17 Score=55.13 Aligned_cols=201 Identities=13% Similarity=0.125 Sum_probs=120.7
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEE------------ECCCcEEEEecCC--CeEE-EEecc-----CCCCeEEEEEcC-
Q 003177 554 QLIPASTSKVESCHFSPDGKLLATG------------GHDKKAVLWCTES--FTVK-STLEE-----HTQWITDVRFSP- 612 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~Lasg------------s~Dg~I~vwd~~t--~~~~-~~l~~-----h~~~I~~l~fsp- 612 (842)
..+++-......+++.++|..++++ ..+|.|.++|.++ .+.. ..+.+ ..-....|.+.+
T Consensus 43 ~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d 122 (355)
T 3sre_A 43 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 122 (355)
T ss_dssp EECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC
T ss_pred EEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC
Confidence 3344433345667788887544443 1689999999873 2221 12222 234677788765
Q ss_pred -CCC-EEEEEe-C--CCeEEEEEcCCCCcee---eEeecC-ccceEEEEEcCCCCcEEEEEe-----------------C
Q 003177 613 -SLS-RLATSS-A--DRTVRVWDTENPDYSL---RTFTGH-STTVMSLDFHPSKEDLLCSCD-----------------N 666 (842)
Q Consensus 613 -dg~-~Latgs-~--Dg~I~IWDl~t~~~~i---~~~~~h-~~~V~sl~fspdg~~llasgs-----------------~ 666 (842)
++. +|+++. . +.+|.+|+++...... ..+.+. -...+++++.++|. ++++.. .
T Consensus 123 ~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCC
T ss_pred CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCC
Confidence 354 444443 2 5678888887643322 223222 24578999999876 443433 1
Q ss_pred CCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCC-Ce--EEEEEeCCCCCEEEEEEcC-CC
Q 003177 667 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SG 741 (842)
Q Consensus 667 Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~-dg~I~IwDl~t-~~--~~~~l~~h~~~V~sl~~sp-dg 741 (842)
.|.|+.+|. +++......-...+.++|+|+++.++++.. .+.|..||+.. +. ....+ ........+++++ +|
T Consensus 202 ~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 202 WSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG 278 (355)
T ss_dssp CEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC
T ss_pred ccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCC
Confidence 245555554 444333444456789999999999888775 58999999863 32 22333 2346678899999 59
Q ss_pred CEEEEEe-CC-eEEEEEcC
Q 003177 742 EYLASVS-DE-LVRVWSIG 758 (842)
Q Consensus 742 ~~Lasgs-Dg-~I~IwDl~ 758 (842)
++.+++. ++ .|..|+-.
T Consensus 279 ~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp CEEEEEESCHHHHHSCCTT
T ss_pred cEEEEecCCceEEEEECCC
Confidence 9888775 43 45445443
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.44 E-value=0.067 Score=58.18 Aligned_cols=236 Identities=8% Similarity=0.053 Sum_probs=125.3
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEE--EEe----ccCCCCeEEEEEcCC---CCEEEEE---e
Q 003177 554 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL----EEHTQWITDVRFSPS---LSRLATS---S 621 (842)
Q Consensus 554 ~~l~gH~~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~--~~l----~~h~~~I~~l~fspd---g~~Latg---s 621 (842)
.++...-..-+.|+|.|||.++++--..|.|++++..+++.. ..+ .........|+|+|+ +.+|++. .
T Consensus 25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 334444455789999999987776655899999987655432 222 123566899999995 3444433 2
Q ss_pred CCCeEEEEEcCCCC---------ce-eeEee-cCccceEEEEEcCCCCcEEEEEe------------CCCcEEEEECCCC
Q 003177 622 ADRTVRVWDTENPD---------YS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCD------------NNSEIRYWSINNG 678 (842)
Q Consensus 622 ~Dg~I~IWDl~t~~---------~~-i~~~~-~h~~~V~sl~fspdg~~llasgs------------~Dg~I~vwDl~t~ 678 (842)
.++.|.-|.+.... .. +..+. ........|.|.|+|..++.+|+ ..|.|.-++....
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 45567767665411 11 11121 11123457999999864443332 1355655565422
Q ss_pred c-------eeeEEe-ecCCeeEEEEeCCCCEEEEEEc--CC--eEEEEECC--------CC--------eEEEEEeCCCC
Q 003177 679 S-------CAGVFK-CQSGATQMRFQPRLGRILAAAI--EN--YISILDVE--------TQ--------VCRLKLQGHKN 730 (842)
Q Consensus 679 ~-------~i~~~~-~~~~i~~v~~sp~g~~l~~~s~--dg--~I~IwDl~--------t~--------~~~~~l~~h~~ 730 (842)
- ....+. .......++|+|++. |+++.. ++ .|.+.... .+ .++..+..+..
T Consensus 185 ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp BCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred ccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 0 011222 223467899999755 444433 22 23332110 00 11223322223
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003177 731 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVI 791 (842)
Q Consensus 731 ~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~~spdg~~L~sg 791 (842)
....++|. +|.+++..- ...|....+..... .+....+......+..++..|||..+++.
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 55677776 455444444 55666666654321 11222333345678999999998644443
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.38 E-value=0.012 Score=62.20 Aligned_cols=228 Identities=11% Similarity=0.056 Sum_probs=114.3
Q ss_pred CCEEEEEECC----CcEEEEecCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCceeeE
Q 003177 572 GKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRT 640 (842)
Q Consensus 572 g~~Lasgs~D----g~I~vwd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~t~~~~i~~ 640 (842)
+.+++.|+.+ ..+.+||..+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||..+.......
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455555543 4688899887653322 1111111122222 56677777754 35888998875432111
Q ss_pred -eecCccceEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCceeeEEeecCC--eeEEEEeCCCCEEEEEEc-----
Q 003177 641 -FTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI----- 707 (842)
Q Consensus 641 -~~~h~~~V~sl~fspdg~~llasgs~Dg-----~I~vwDl~t~~~i~~~~~~~~--i~~v~~sp~g~~l~~~s~----- 707 (842)
+.........+.+ + +.+++.|+.++ .+.+||+.+.+-...-..... -.+++. .++..++.|+.
T Consensus 94 ~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL--N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASR 169 (302)
T ss_dssp CCSSCCBSCEEEEE--T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTT
T ss_pred CCCccccceEEEEE--C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCC
Confidence 1111111222222 3 44666666543 578899887764433222111 122222 24455556554
Q ss_pred --CCeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceE
Q 003177 708 --ENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFH 777 (842)
Q Consensus 708 --dg~I~IwDl~t~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~ 777 (842)
-..+.+||+.+.+-... +....... +++.. ++++++.|+ + ..+.+||+.+.. ...+..+...... .
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~-~ 245 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNA-WRQVADMNMCRRN-A 245 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTE-EEEECCCSSCCBS-C
T ss_pred ccccEEEEEeCCCCcEEECCCCccccccc-cEEEE-CCEEEEECCCCCCcccceEEEEeCCCCC-EeeCCCCCCcccc-C
Confidence 24588999987743322 21111112 22222 566666665 3 368999988752 1111111111111 1
Q ss_pred EEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEE
Q 003177 778 SCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTL 810 (842)
Q Consensus 778 sv~~spdg~~L~sgs~dg-----~I~Iwdl~~~~~~~~ 810 (842)
.++. -++..+++|+.++ .|.+||+.+.+...+
T Consensus 246 ~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 246 GVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp EEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred eEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 2222 2566666666553 599999998876654
No 322
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.36 E-value=0.02 Score=65.09 Aligned_cols=257 Identities=12% Similarity=0.092 Sum_probs=150.4
Q ss_pred EEEEECCCcEEEEecCCCeEEEEeccC-------------------------CCCeE--EEEEcC---CCCEEEEEeC-C
Q 003177 575 LATGGHDKKAVLWCTESFTVKSTLEEH-------------------------TQWIT--DVRFSP---SLSRLATSSA-D 623 (842)
Q Consensus 575 Lasgs~Dg~I~vwd~~t~~~~~~l~~h-------------------------~~~I~--~l~fsp---dg~~Latgs~-D 623 (842)
+.+|+..|.|+|+-+.+++.+..+... .+... .+.+.. ||++|+.-.. .
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 678899999999999999988876310 01111 233322 5777777764 5
Q ss_pred CeEEEEEcCCCCceeeEeecCccceEEEEEc--CCCCcEEEEEe------CCCcE------------EEEECCCCceeeE
Q 003177 624 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCD------NNSEI------------RYWSINNGSCAGV 683 (842)
Q Consensus 624 g~I~IWDl~t~~~~i~~~~~h~~~V~sl~fs--pdg~~llasgs------~Dg~I------------~vwDl~t~~~i~~ 683 (842)
..|-..+++.-+............+..+.|- |+..++++.+- .||.. ...|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 5677777776543222223345667888886 56565554331 23221 1234444444444
Q ss_pred EeecCCeeEEEEeCCCCEEEEEEcCC---------------eEEEEECCC-------C--e-----EEEEEeC-------
Q 003177 684 FKCQSGATQMRFQPRLGRILAAAIEN---------------YISILDVET-------Q--V-----CRLKLQG------- 727 (842)
Q Consensus 684 ~~~~~~i~~v~~sp~g~~l~~~s~dg---------------~I~IwDl~t-------~--~-----~~~~l~~------- 727 (842)
+........+...+++++.++.+.+. .+.++++.. + + -+..+.+
T Consensus 233 v~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~ 312 (638)
T 3sbq_A 233 VIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKD 312 (638)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBC
T ss_pred EEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccC
Confidence 44445555666778888887777532 355555420 0 0 0111111
Q ss_pred --------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC---------CCceeEEEeecCCCceEEEEEeCCCCEE
Q 003177 728 --------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG---------SKGECIHELSCTGNKFHSCVFHPTFPSL 788 (842)
Q Consensus 728 --------h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~---------~~~~~i~~~~~~~~~I~sv~~spdg~~L 788 (842)
-......+.++|||+++++++ +.+|.|+|++.. ....++..-...+-.....+|.++|. .
T Consensus 313 ~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~-a 391 (638)
T 3sbq_A 313 SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN-A 391 (638)
T ss_dssp CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE-E
T ss_pred CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc-e
Confidence 123345788999999999988 889999999742 11122222222456678899999994 4
Q ss_pred EEE-EcCCeEEEEECCCC----------eEE-EEccCCCCeeEEEE------eCCCCEEEEEe
Q 003177 789 LVI-GCYETLELWNMTEN----------KTL-TLSAHDKLVSSLAA------STVNGMVASAS 833 (842)
Q Consensus 789 ~sg-s~dg~I~Iwdl~~~----------~~~-~~~~h~~~V~sla~------spdg~~Lasgs 833 (842)
++. --|..|..|++... .++ ++.-|-. +-.+.- .+||++|++..
T Consensus 392 YTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred EeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence 444 46889999998642 233 4444433 222322 46888888765
No 323
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.29 E-value=2.8e-05 Score=93.92 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=1.9
Q ss_pred cCCCCeeEEEEeC
Q 003177 812 AHDKLVSSLAAST 824 (842)
Q Consensus 812 ~h~~~V~sla~sp 824 (842)
.|-.-+..+.|.+
T Consensus 707 DH~pV~a~f~l~~ 719 (727)
T 4b8c_D 707 DHIPLLARFEFMK 719 (727)
T ss_dssp SBCC---------
T ss_pred CceeEEEEEEEec
Confidence 4444455555544
No 324
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.24 E-value=0.012 Score=61.92 Aligned_cols=215 Identities=13% Similarity=0.092 Sum_probs=106.3
Q ss_pred CCCEEEEEe-CC-----CeEEEEEcCCCCceeeE-eecCccceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCc-
Q 003177 613 SLSRLATSS-AD-----RTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGS- 679 (842)
Q Consensus 613 dg~~Latgs-~D-----g~I~IWDl~t~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~- 679 (842)
++.+++.|+ .+ ..+.+||+.+....... +.........+.+ + +.+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--H-DRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--C-CEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 344555555 22 36888888765431111 1111111222222 2 4566677654 469999998776
Q ss_pred --eeeEEeecC--CeeEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEe
Q 003177 680 --CAGVFKCQS--GATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS 748 (842)
Q Consensus 680 --~i~~~~~~~--~i~~v~~sp~g~~l~~~s~d-----g~I~IwDl~t~~~~~--~l~~h~~~V~sl~~spdg~~Lasgs 748 (842)
-...-.... .-..++. .++..++.|+.+ ..+.+||+.+.+-.. .+........++.+ ++++++.|+
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred CeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 333222111 1122222 245556666543 468999998764332 22211111222222 666666665
Q ss_pred -C-----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEccCCC-C
Q 003177 749 -D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK-L 816 (842)
Q Consensus 749 -D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d-----g~I~Iwdl~~~~~~~~~~h~~-~ 816 (842)
+ ..+.+||+.+.. ...+..+..... -.+++. -++..+++|+.+ ..|.+||+.+.+...+..... .
T Consensus 168 ~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~-~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGH-WTNVTPMATKRS-GAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTE-EEEECCCSSCCB-SCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCc-EEeCCCCCcccc-cceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc
Confidence 3 368999988752 111111111111 112222 255566666654 479999999888765432211 1
Q ss_pred eeEEEEeCCCCEEEEEeCCC
Q 003177 817 VSSLAASTVNGMVASASHDK 836 (842)
Q Consensus 817 V~sla~spdg~~Lasgs~DG 836 (842)
....++.-++++++.|+.++
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 245 CYVGATVLRGRLYAIAGYDG 264 (301)
T ss_dssp BSCEEEEETTEEEEECCBCS
T ss_pred cceeEEEECCEEEEEcCcCC
Confidence 11112223677778877653
No 325
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.22 E-value=0.084 Score=56.25 Aligned_cols=214 Identities=5% Similarity=-0.083 Sum_probs=125.7
Q ss_pred CCCCEEEEEE--CCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC--------------CeEEEEEcCC
Q 003177 570 PDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------RTVRVWDTEN 633 (842)
Q Consensus 570 pdg~~Lasgs--~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D--------------g~I~IWDl~t 633 (842)
.++.+|+... .++.|+..+.+... ...+... .+--+++++.+|+.+... ..|+..+++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 4566766664 24666666655433 3333221 133457788888877653 3677777776
Q ss_pred CCceeeEeecCccceEEEEEcCCCCcEEEEE---eCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEEc-CC
Q 003177 634 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN 709 (842)
Q Consensus 634 ~~~~i~~~~~h~~~V~sl~fspdg~~llasg---s~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s~-dg 709 (842)
... ..+.... +..|+++++.++++- ..+..|+..++........... .+ ..++++++.|+..+. ..
T Consensus 98 ~~~--~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HGS--TVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCC--EEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS--CC--CCSEEETTEEEEECTTTC
T ss_pred Ccc--eEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCCCc
Confidence 542 2232221 235677788777665 3455677777774443333322 22 456778888887765 57
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003177 710 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 786 (842)
Q Consensus 710 ~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~ 786 (842)
.|++.++..+.....+.+ ... ..+.|++.+|+-.. + ..|..-++..... ..+. ...+ ..|+|++.
T Consensus 168 ~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~----~~Lt--~~~~--~~~~~~g~ 235 (302)
T 3s25_A 168 QLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP----VVLT--EANI--EHYNVYGS 235 (302)
T ss_dssp CEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC----EECS--CSCE--EEEEEETT
T ss_pred eEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe----EEEe--CCCc--ceEEECCC
Confidence 899999887765544432 222 34569999888776 3 3676667665432 1221 2223 34888898
Q ss_pred EEEEEEc--CCeEEEEECCCCeEEEE
Q 003177 787 SLLVIGC--YETLELWNMTENKTLTL 810 (842)
Q Consensus 787 ~L~sgs~--dg~I~Iwdl~~~~~~~~ 810 (842)
.|+.+.. .+.|...++.......+
T Consensus 236 ~Iy~~~~~~~~~i~~~~~DG~~r~~l 261 (302)
T 3s25_A 236 LIFYQRGGDNPALCVVKNDGTGFKEL 261 (302)
T ss_dssp EEEEEECSSSCEEEEEETTSCCCEEE
T ss_pred EEEEEECCCCcEEEEEECCCCccEEe
Confidence 8887643 35788888877554433
No 326
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.21 E-value=0.11 Score=58.77 Aligned_cols=156 Identities=13% Similarity=0.172 Sum_probs=89.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce-eeEeec------CccceEEEEEcCC---CCcEEEEEeC-----
Q 003177 602 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTG------HSTTVMSLDFHPS---KEDLLCSCDN----- 666 (842)
Q Consensus 602 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~-i~~~~~------h~~~V~sl~fspd---g~~llasgs~----- 666 (842)
-...+.|+|.|+|+++++-...+.|++++..++... +..+.. ....+..|+|+|+ +..+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345789999999987776544457888876544321 112211 2356779999996 5555555432
Q ss_pred -------CCcEEEEECCCC--ce---eeEEe---e--cCCeeEEEEeCCCCEEEEEEcC---------------------
Q 003177 667 -------NSEIRYWSINNG--SC---AGVFK---C--QSGATQMRFQPRLGRILAAAIE--------------------- 708 (842)
Q Consensus 667 -------Dg~I~vwDl~t~--~~---i~~~~---~--~~~i~~v~~sp~g~~l~~~s~d--------------------- 708 (842)
...|..|++... .. ...+. . ......++|.|++..+++.+..
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~ 185 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQ 185 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHH
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccc
Confidence 235666665432 11 11121 1 1236889999999877765532
Q ss_pred -----------CeEEEEECCCC-----------eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcC
Q 003177 709 -----------NYISILDVETQ-----------VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIG 758 (842)
Q Consensus 709 -----------g~I~IwDl~t~-----------~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~ 758 (842)
|.|.-++.... ....--.+| .....++|+++|.++++-. ++.-.|.-+.
T Consensus 186 ~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~ 258 (454)
T 1cru_A 186 ELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIV 258 (454)
T ss_dssp HHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECC
T ss_pred cccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEec
Confidence 34555554432 111111234 3567899999988777654 5444444444
No 327
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.21 E-value=0.012 Score=62.54 Aligned_cols=230 Identities=7% Similarity=0.002 Sum_probs=115.6
Q ss_pred CCCCEEEEEECC----CcEEEEecCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeC----C-----CeEEEEEcCCC
Q 003177 570 PDGKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA----D-----RTVRVWDTENP 634 (842)
Q Consensus 570 pdg~~Lasgs~D----g~I~vwd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~----D-----g~I~IWDl~t~ 634 (842)
-++.+++.|+.+ ..+.+||..+.+-... +.........+.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 356677777642 4688999887654322 1111111122222 5667777665 2 35888998765
Q ss_pred Cceee-EeecCccceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCceeeEEeecCC--eeEEEEeCCCCEEEEEE
Q 003177 635 DYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 706 (842)
Q Consensus 635 ~~~i~-~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~~i~~~~~~~~--i~~v~~sp~g~~l~~~s 706 (842)
..... .+.........+.+ + +.+++.|+.+ ..+.+||+.+.+-...-..... -.+++.. ++..++.|+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGG 176 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred eEeECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeC
Confidence 43111 11111112222333 3 4466666533 4688999987654333222111 1122222 455666666
Q ss_pred cC-----CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCC
Q 003177 707 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG 773 (842)
Q Consensus 707 ~d-----g~I~IwDl~t~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~ 773 (842)
.+ ..+.+||+.+.+-... +........++.+ ++++++.|+ + ..+.+||+.+.. ...+..+....
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r 253 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET-WTFVAPMKHRR 253 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-EEECCCCSSCC
T ss_pred CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc-EEECCCCCCCc
Confidence 54 4689999987643321 1111111222222 566666665 3 469999988752 11111111111
Q ss_pred CceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEE
Q 003177 774 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTL 810 (842)
Q Consensus 774 ~~I~sv~~spdg~~L~sgs~d-----g~I~Iwdl~~~~~~~~ 810 (842)
.. .+++. -++..+++|+.+ ..|.+||+.+.+...+
T Consensus 254 ~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 254 SA-LGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp BS-CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred cc-eEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 11 22222 255666666644 3688999988876543
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.19 E-value=0.036 Score=58.87 Aligned_cols=224 Identities=8% Similarity=-0.024 Sum_probs=114.0
Q ss_pred EEEEEECCCcEEEEecCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeC-----C------CeEEEEEcCCCCceeeEe
Q 003177 574 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA-----D------RTVRVWDTENPDYSLRTF 641 (842)
Q Consensus 574 ~Lasgs~Dg~I~vwd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~-----D------g~I~IWDl~t~~~~i~~~ 641 (842)
+++.|+ ..+.+||..+.+-.. .+..........+...++.+++.|+. . ..+.+||..+... ..+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EEC
Confidence 344555 579999998876432 22222223333344457788888874 1 1377888876543 222
Q ss_pred ecC---ccceEEEEEcCCCCcEEEEEeCC--------CcEEEEECCCCceeeEEeecCC--eeEEEEeCCCCEEEEEEc-
Q 003177 642 TGH---STTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI- 707 (842)
Q Consensus 642 ~~h---~~~V~sl~fspdg~~llasgs~D--------g~I~vwDl~t~~~i~~~~~~~~--i~~v~~sp~g~~l~~~s~- 707 (842)
..- ......+.+ ++.+++.|+.+ ..+.+||+.+.+-...-..... -.+++. .++..++.|+.
T Consensus 83 ~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 158 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKG 158 (315)
T ss_dssp CCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred CCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCC
Confidence 111 111112222 34566666632 4689999987654332221111 122222 34556666665
Q ss_pred C-----CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCceeEEEeecCCC
Q 003177 708 E-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGN 774 (842)
Q Consensus 708 d-----g~I~IwDl~t~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-Dg-----~I~IwDl~s~~~~~~i~~~~~~~~ 774 (842)
+ +.+.+||+.+.+-... +........++.+ ++++++.|+ ++ .+.+||+.+.. ...+..+.....
T Consensus 159 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~ 235 (315)
T 4asc_A 159 SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQERS 235 (315)
T ss_dssp TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSCCB
T ss_pred CCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe-EEECCCCCCccc
Confidence 2 4689999987643321 1111111122222 566666665 43 58889987751 111211111111
Q ss_pred ceEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCeEEEE
Q 003177 775 KFHSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 810 (842)
Q Consensus 775 ~I~sv~~spdg~~L~sgs~d--------------g~I~Iwdl~~~~~~~~ 810 (842)
. .+++. -++..+++|+.+ ..|.+||+.+.+...+
T Consensus 236 ~-~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 236 S-LSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp S-CEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred c-eeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 1 22222 255666666653 2478999988876644
No 329
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.17 E-value=0.026 Score=59.66 Aligned_cols=210 Identities=10% Similarity=0.039 Sum_probs=106.2
Q ss_pred CEEEEEeC--CCeEEEEEcCCCCceee-EeecCccceEEEEEcCCCCcEEEEEeCC----CcEEEEECCCCceeeEEeec
Q 003177 615 SRLATSSA--DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQ 687 (842)
Q Consensus 615 ~~Latgs~--Dg~I~IWDl~t~~~~i~-~~~~h~~~V~sl~fspdg~~llasgs~D----g~I~vwDl~t~~~i~~~~~~ 687 (842)
.+++.|+. ...+.+||..+...... .+.........+.+ ++.+++.|+.+ ..+.+||+.+.+-...-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 34555654 35688899887543211 11111112222222 34567677654 67889999887654433222
Q ss_pred CC--eeEEEEeCCCCEEEEEEcC------CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-------
Q 003177 688 SG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D------- 749 (842)
Q Consensus 688 ~~--i~~v~~sp~g~~l~~~s~d------g~I~IwDl~t~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D------- 749 (842)
.. -..++. -++..++.|+.+ ..+.+||..+.+-... +....... +++. -++++++.|+ +
T Consensus 90 ~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 90 TPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVE-ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp SCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEESCTTTCE
T ss_pred ccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEE-ECCEEEEECCCCCCCCccc
Confidence 11 112222 255666666654 4689999988753322 11111111 2222 2566666654 2
Q ss_pred --CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEccCC---CCeeE
Q 003177 750 --ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD---KLVSS 819 (842)
Q Consensus 750 --g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d-----g~I~Iwdl~~~~~~~~~~h~---~~V~s 819 (842)
..+.+||+.+.. ...+..+..... -.+++.. ++..+++|+.+ ..|.+||+.+.+...+.... ....+
T Consensus 167 ~~~~~~~yd~~~~~-W~~~~~~p~~r~-~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 167 VLNSCEVYDPATET-WTELCPMIEARK-NHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243 (306)
T ss_dssp ECCCEEEEETTTTE-EEEECCCSSCCB-SCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred ccceEEEeCCCCCe-EEECCCccchhh-cceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence 348899988752 111111111111 1222222 55556666543 36999999988766443221 11222
Q ss_pred EEEeCCCCEEEEEeCC
Q 003177 820 LAASTVNGMVASASHD 835 (842)
Q Consensus 820 la~spdg~~Lasgs~D 835 (842)
+.+ ++++++.|+.+
T Consensus 244 ~~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 244 AAV--GSIVYVLAGFQ 257 (306)
T ss_dssp EEE--TTEEEEEECBC
T ss_pred EEE--CCEEEEEeCcC
Confidence 222 67788888755
No 330
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.13 E-value=0.022 Score=60.05 Aligned_cols=212 Identities=9% Similarity=0.050 Sum_probs=104.6
Q ss_pred CEEEEEeCC----CeEEEEEcCCCCceee-EeecCccceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCceeeEE
Q 003177 615 SRLATSSAD----RTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVF 684 (842)
Q Consensus 615 ~~Latgs~D----g~I~IWDl~t~~~~i~-~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~~i~~~ 684 (842)
.+++.|+.+ ..+.+||+.+...... .+.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM---AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE---CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 344555432 3577888876543111 01111111122222 34566677644 35889999877644332
Q ss_pred eecCC--eeEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----
Q 003177 685 KCQSG--ATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D----- 749 (842)
Q Consensus 685 ~~~~~--i~~v~~sp~g~~l~~~s~dg-----~I~IwDl~t~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D----- 749 (842)
..... -.+++. .++..++.|+.++ .+.+||+.+.+-... +...... .+++. -++++++.|+ +
T Consensus 94 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 94 NMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGV-VGGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCEETTTTE
T ss_pred CCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEE-ECCEEEEEeCCCCCCCc
Confidence 22111 122222 2556667777553 588899887653332 1111111 12222 2556666554 2
Q ss_pred --CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEccCCCC--eeEE
Q 003177 750 --ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL--VSSL 820 (842)
Q Consensus 750 --g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d-----g~I~Iwdl~~~~~~~~~~h~~~--V~sl 820 (842)
..+.+||+.+.. ...+..+...... .+++. -++..+++|+.+ ..+.+||+.+.+...+...... -.++
T Consensus 171 ~~~~~~~yd~~~~~-W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~ 247 (302)
T 2xn4_A 171 CLSTVECYNATTNE-WTYIAEMSTRRSG-AGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV 247 (302)
T ss_dssp ECCCEEEEETTTTE-EEEECCCSSCCBS-CEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred cccEEEEEeCCCCc-EEECCCCcccccc-ccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeE
Confidence 258899987752 1111111111111 22222 255666666654 3799999998877654422211 1122
Q ss_pred EEeCCCCEEEEEeCCC
Q 003177 821 AASTVNGMVASASHDK 836 (842)
Q Consensus 821 a~spdg~~Lasgs~DG 836 (842)
+ ..++++++.|+.++
T Consensus 248 ~-~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 248 C-AVNGLLYVVGGDDG 262 (302)
T ss_dssp E-EETTEEEEECCBCS
T ss_pred E-EECCEEEEECCcCC
Confidence 2 23677888887654
No 331
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.06 E-value=0.00016 Score=87.30 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=3.3
Q ss_pred CCcEEEEec
Q 003177 581 DKKAVLWCT 589 (842)
Q Consensus 581 Dg~I~vwd~ 589 (842)
+|...+|..
T Consensus 487 ~G~AI~y~~ 495 (727)
T 4b8c_D 487 DGCCIFFKR 495 (727)
T ss_dssp CCCEEEC--
T ss_pred ccEEEEEEc
Confidence 444444443
No 332
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.05 E-value=0.094 Score=55.89 Aligned_cols=177 Identities=8% Similarity=0.027 Sum_probs=107.9
Q ss_pred EEEEcCCCCEEEEEECC--------------CcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe--CCC--eE
Q 003177 565 SCHFSPDGKLLATGGHD--------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--ADR--TV 626 (842)
Q Consensus 565 sv~fSpdg~~Lasgs~D--------------g~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs--~Dg--~I 626 (842)
+--++++|.+|+.+... ..|+..+++..+... +... . +..|++++++|+... .++ .|
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceE
Confidence 34557788888777543 367777777654332 3211 1 235677888888776 333 45
Q ss_pred EEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCeeEEEEeCCCCEEEEEE
Q 003177 627 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 706 (842)
Q Consensus 627 ~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g~~l~~~s 706 (842)
+.-+++... ...+..+.. ..|+++++.++.+......|.+.++..+.....+. ... ...++|++++|+...
T Consensus 132 y~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~-~~~~~P~g~~iy~t~ 202 (302)
T 3s25_A 132 YRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNC-YKPVVLDDTNVYYMD 202 (302)
T ss_dssp EEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCE-EEEEEEETTEEEEEE
T ss_pred EEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCc-cceeeecCCEEEEEE
Confidence 555555332 344444432 45677888888776657789999988665544433 333 234679999988877
Q ss_pred cC--CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCC
Q 003177 707 IE--NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG 760 (842)
Q Consensus 707 ~d--g~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~ 760 (842)
.+ ..|..-++..... ..+. ...+ ..|+|++..|+.+. .+.|..-++...
T Consensus 203 ~~~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 203 VNRDNAIVHVNINNPNP-VVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp GGGTTEEEEECSSSCCC-EECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred cCCCcEEEEEECCCCCe-EEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 54 3677777775542 2332 2233 34778888888764 346777776554
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.91 E-value=0.13 Score=54.62 Aligned_cols=226 Identities=8% Similarity=0.005 Sum_probs=110.7
Q ss_pred EEEEEECCCcEEEEecCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeC----CC-------eEEEEEcCCCCceee-E
Q 003177 574 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA----DR-------TVRVWDTENPDYSLR-T 640 (842)
Q Consensus 574 ~Lasgs~Dg~I~vwd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~----Dg-------~I~IWDl~t~~~~i~-~ 640 (842)
+++.|+. .+.+||..+.+-.. .+..........+...++.+++.|+. ++ .+.+||..+...... .
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444443 47889988776543 12211122233334457778888873 12 277788876543111 1
Q ss_pred eecCccceEEEEEcCCCCcEEEEEeCC-------CcEEEEECCCCceeeEEeecCC--eeEEEEeCCCCEEEEEEc----
Q 003177 641 FTGHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI---- 707 (842)
Q Consensus 641 ~~~h~~~V~sl~fspdg~~llasgs~D-------g~I~vwDl~t~~~i~~~~~~~~--i~~v~~sp~g~~l~~~s~---- 707 (842)
+.........+.+ + +.+++.|+.+ ..+.+||+.+.+-...-..... -.+++. .++..++.|+.
T Consensus 96 ~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 96 LPSARCLFGLGEV--D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDK 171 (318)
T ss_dssp BSSCBCSCEEEEE--T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSS
T ss_pred CCccccccceEEE--C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCC
Confidence 1111111122222 3 4466666643 3588899987664433222221 112222 35555666654
Q ss_pred --CCeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceE
Q 003177 708 --ENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFH 777 (842)
Q Consensus 708 --dg~I~IwDl~t~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~ 777 (842)
-+.+.+||+.+.+-... +...... .+++.. ++++++.|+ + ..+.+||+.+.. ...+..+...... .
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~-~ 247 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQERSS-I 247 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSCCBS-C
T ss_pred CccceEEEEcCCCCEEEECCCCCCCccc-ceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCe-EEECCCCCCcccc-e
Confidence 24689999988753322 1111111 222222 566666665 2 257889987752 1112111111111 1
Q ss_pred EEEEeCCCCEEEEEEcC--------------CeEEEEECCCCeEEEE
Q 003177 778 SCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 810 (842)
Q Consensus 778 sv~~spdg~~L~sgs~d--------------g~I~Iwdl~~~~~~~~ 810 (842)
+++ .-++..+++|+.+ ..|.+||+.+.+...+
T Consensus 248 ~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 248 SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 222 2345556666543 3688999988876644
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.79 E-value=0.031 Score=60.45 Aligned_cols=230 Identities=8% Similarity=-0.049 Sum_probs=112.2
Q ss_pred CCCEEEEEECC-CcEEEEecCC--Ce--EEEEec-cCCCCeEEEEEcCCCCEEEEEeC-C---------CeEEEEEcCCC
Q 003177 571 DGKLLATGGHD-KKAVLWCTES--FT--VKSTLE-EHTQWITDVRFSPSLSRLATSSA-D---------RTVRVWDTENP 634 (842)
Q Consensus 571 dg~~Lasgs~D-g~I~vwd~~t--~~--~~~~l~-~h~~~I~~l~fspdg~~Latgs~-D---------g~I~IWDl~t~ 634 (842)
++++++.|+.+ ..+.+||..+ .+ .+..+. .......++.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56666666543 5788999863 22 222222 11111222333 5667777765 2 46889998875
Q ss_pred CceeeEeec-C-ccceEEEEEcCCCCcEEEEEeCC---------------------------------------CcEEEE
Q 003177 635 DYSLRTFTG-H-STTVMSLDFHPSKEDLLCSCDNN---------------------------------------SEIRYW 673 (842)
Q Consensus 635 ~~~i~~~~~-h-~~~V~sl~fspdg~~llasgs~D---------------------------------------g~I~vw 673 (842)
......... . .....++. .+ +.+++.|+.+ ..+.+|
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~--~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 173 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV--HN-GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE--ET-TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred cEEECCCCCCcccccceEEE--EC-CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence 432111111 1 11122222 23 4566677654 578999
Q ss_pred ECCCCceeeEEeecC--Ce-eEEEEeCCCCEEEEEEc------CCeEEEEEC--CCCeEEE--EEeCCCCCEEEEEEcCC
Q 003177 674 SINNGSCAGVFKCQS--GA-TQMRFQPRLGRILAAAI------ENYISILDV--ETQVCRL--KLQGHKNQVHSVCWNTS 740 (842)
Q Consensus 674 Dl~t~~~i~~~~~~~--~i-~~v~~sp~g~~l~~~s~------dg~I~IwDl--~t~~~~~--~l~~h~~~V~sl~~spd 740 (842)
|+.+.+-...-.... .. .+++.. ++..++.|+. ...+.+||+ .+.+-.. .+........+.+...+
T Consensus 174 d~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~ 252 (357)
T 2uvk_A 174 DPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISN 252 (357)
T ss_dssp ETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEET
T ss_pred eCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEEC
Confidence 998876544433221 12 233333 4455555553 346778887 4332221 11111111111122235
Q ss_pred CCEEEEEe-C----------------------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC--
Q 003177 741 GEYLASVS-D----------------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-- 795 (842)
Q Consensus 741 g~~Lasgs-D----------------------g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg-- 795 (842)
+++++.|+ + ..+.+||+.+.. ...+..+...... ..++.-++..+++|+.++
T Consensus 253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~ 329 (357)
T 2uvk_A 253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGG 329 (357)
T ss_dssp TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGG
T ss_pred CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCC
Confidence 56666655 2 257889988652 2333333322222 222334667778888653
Q ss_pred ----eEEEEECCCCeEEE
Q 003177 796 ----TLELWNMTENKTLT 809 (842)
Q Consensus 796 ----~I~Iwdl~~~~~~~ 809 (842)
.|.++++++++.+.
T Consensus 330 ~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 330 KAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp CEEEEEEEEEC-CCSCEE
T ss_pred CEeeeEEEEEEcCcEeEe
Confidence 57778999888774
No 335
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.76 E-value=0.12 Score=54.77 Aligned_cols=210 Identities=10% Similarity=0.017 Sum_probs=103.9
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeC-----C------CcEEEEECCCCceeeEE
Q 003177 616 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----N------SEIRYWSINNGSCAGVF 684 (842)
Q Consensus 616 ~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~-----D------g~I~vwDl~t~~~i~~~ 684 (842)
+++.|+ ..+.+||..+.......+..............+ +.+++.|+. . ..+.+||..+.+-...-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344554 579999998876533222211122222223334 446556662 1 12788898877643322
Q ss_pred eecCC--eeEEEEeCCCCEEEEEEcC--------CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe--C-
Q 003177 685 KCQSG--ATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS--D- 749 (842)
Q Consensus 685 ~~~~~--i~~v~~sp~g~~l~~~s~d--------g~I~IwDl~t~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs--D- 749 (842)
..... -.+++.. ++..++.|+.+ +.+.+||..+.+-... +...... .+++. -++++++.|+ +
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSD 160 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTT
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCC
Confidence 22111 1122222 44555666532 4689999988743221 1111111 22222 3555666555 2
Q ss_pred ----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEEccCCC--Cee
Q 003177 750 ----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDK--LVS 818 (842)
Q Consensus 750 ----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg-----~I~Iwdl~~~~~~~~~~h~~--~V~ 818 (842)
..+.+||+.+.. ...+..+..... -.+++. -++..+++|+.++ .+.+||+.+.+...+..... .-.
T Consensus 161 ~~~~~~~~~yd~~~~~-W~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 237 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFE-WKELAPMQTARS-LFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL 237 (315)
T ss_dssp SCBCCCEEEEETTTTE-EEECCCCSSCCB-SCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CcccceEEEEeCCCCe-EEECCCCCCchh-ceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 368999988751 111111111111 122222 2566677777654 68999999887765442211 111
Q ss_pred EEEEeCCCCEEEEEeCC
Q 003177 819 SLAASTVNGMVASASHD 835 (842)
Q Consensus 819 sla~spdg~~Lasgs~D 835 (842)
+++. -++++++.|+.+
T Consensus 238 ~~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 238 SLVS-LVGTLYAIGGFA 253 (315)
T ss_dssp EEEE-ETTEEEEEEEEE
T ss_pred eEEE-ECCEEEEECCcc
Confidence 2222 356777887764
No 336
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.76 E-value=0.42 Score=53.86 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=62.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEE--EEecc------CCCCeEEEEEcCC---CCEEEEEeC-------
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEE------HTQWITDVRFSPS---LSRLATSSA------- 622 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~--~~l~~------h~~~I~~l~fspd---g~~Latgs~------- 622 (842)
..-++|+|.|+|+++++-...+.|++++..+++.. ..+.. ....+..|+|+|+ +.+|+++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35779999999987776544357988886555432 23321 2456789999995 555554432
Q ss_pred ------CCeEEEEEcCCCCc-------eeeEee-cCccceEEEEEcCCCCcEEEEEe
Q 003177 623 ------DRTVRVWDTENPDY-------SLRTFT-GHSTTVMSLDFHPSKEDLLCSCD 665 (842)
Q Consensus 623 ------Dg~I~IWDl~t~~~-------~i~~~~-~h~~~V~sl~fspdg~~llasgs 665 (842)
...|..|+++.... .+..+. ........|+|.|+|..++.+++
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 23566666543211 111121 11234689999999875554443
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.0096 Score=64.59 Aligned_cols=185 Identities=8% Similarity=0.022 Sum_probs=103.1
Q ss_pred CEEEEEECCCcEEEEecCCCeEEEEeccC-CCCeEEEEEc--C-CCCEEEEE-eCCCeEEEEEcCCCCceeeEeec----
Q 003177 573 KLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--P-SLSRLATS-SADRTVRVWDTENPDYSLRTFTG---- 643 (842)
Q Consensus 573 ~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h-~~~I~~l~fs--p-dg~~Latg-s~Dg~I~IWDl~t~~~~i~~~~~---- 643 (842)
.++++++.||.|+-+|.++|+.+..+... ..++....-. + ++..++.. +.||.|..++..++... ..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-eeeccccce
Confidence 37888999999999999999999888654 1222221100 1 22333333 58999999998776432 11111
Q ss_pred CccceEE---EEE-cC---CCCcEEEEEeCCCcEEEEECCCCceeeEEeecCCe--------eEEEEe-----CCCCEEE
Q 003177 644 HSTTVMS---LDF-HP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--------TQMRFQ-----PRLGRIL 703 (842)
Q Consensus 644 h~~~V~s---l~f-sp---dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i--------~~v~~s-----p~g~~l~ 703 (842)
...++.. ..+ .+ .....+++++.+|.+...|+.+|+.+..+...... .|.... ..+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1111211 000 00 01336778999999999999999999998754321 111111 1235677
Q ss_pred EEEcCCeEEEEECCCCeEEEEE-----eCCCCC--E-EEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003177 704 AAAIENYISILDVETQVCRLKL-----QGHKNQ--V-HSVCWNTSGEYLASVSDELVRVWSIGSG 760 (842)
Q Consensus 704 ~~s~dg~I~IwDl~t~~~~~~l-----~~h~~~--V-~sl~~spdg~~LasgsDg~I~IwDl~s~ 760 (842)
.+..+..+.+.+ ++++ +..+ ..+... + .+-..+.|+.++++..||.|..+|..++
T Consensus 170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G 232 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFR 232 (339)
T ss_dssp EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTC
T ss_pred EecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCC
Confidence 777777777776 4443 2111 110000 0 0000113466666555888888888776
No 338
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.72 E-value=0.06 Score=59.61 Aligned_cols=132 Identities=18% Similarity=0.204 Sum_probs=89.6
Q ss_pred CCeEEEEECCCCeEEEEEeCC----CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCc---------eeEEEeec---
Q 003177 708 ENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG---------ECIHELSC--- 771 (842)
Q Consensus 708 dg~I~IwDl~t~~~~~~l~~h----~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~---------~~i~~~~~--- 771 (842)
++.|+.-++......+.+... -..|..+..+|+|.+||..++..|.|..+..+... .....+..
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 466666666533223333322 22578899999999999999999999999843210 11222222
Q ss_pred ---CCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCe--EE---------EEccCCCCeeEEEEeCCCCEEEEEe-
Q 003177 772 ---TGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK--TL---------TLSAHDKLVSSLAASTVNGMVASAS- 833 (842)
Q Consensus 772 ---~~~~I~sv~~spdg---~~L~sgs~dg~I~Iwdl~~~~--~~---------~~~~h~~~V~sla~spdg~~Lasgs- 833 (842)
...+|..+.|||-+ ..|++-..|+.|++||+.... +. ........|.+++|..++-.|...+
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~ 199 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNT 199 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEEC
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEec
Confidence 24679999999965 689999999999999997622 11 1122336789999999876666644
Q ss_pred -CCCcEE
Q 003177 834 -HDKCVK 839 (842)
Q Consensus 834 -~DG~V~ 839 (842)
.+|.|+
T Consensus 200 t~~GDIY 206 (452)
T 3pbp_A 200 TEGGDIF 206 (452)
T ss_dssp TTSCEEE
T ss_pred CCCCCEE
Confidence 778775
No 339
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.02 Score=62.11 Aligned_cols=192 Identities=6% Similarity=-0.022 Sum_probs=104.0
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeEeecC-ccceEEEEE--cCCCCcEEEEE-eCCCcEEEEECCCCceeeEEeecCCe
Q 003177 615 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDF--HPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGA 690 (842)
Q Consensus 615 ~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h-~~~V~sl~f--spdg~~llasg-s~Dg~I~vwDl~t~~~i~~~~~~~~i 690 (842)
.++++++.||.|+-+|..+++. ...+... ..++....- .+.+..+++.. ..||.|+.++..+|.....+.....+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI-IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE-EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcE-EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 4788899999999999988764 3333322 122222110 01122344443 57999999999988665554432211
Q ss_pred e--EEEEe-----------CCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC--CC-----EEEEEEc-----CCCCEEE
Q 003177 691 T--QMRFQ-----------PRLGRILAAAIENYISILDVETQVCRLKLQGHK--NQ-----VHSVCWN-----TSGEYLA 745 (842)
Q Consensus 691 ~--~v~~s-----------p~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~--~~-----V~sl~~s-----pdg~~La 745 (842)
. -+... ..++.+++++.+|.++..|+++|+.+..+.... .. ..|.... ..+..|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1 11111 146788999999999999999999999886431 10 1111111 1234555
Q ss_pred EEe-CCeEEEEEcCCCCCcee-EEEeecCCCc--e-EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003177 746 SVS-DELVRVWSIGSGSKGEC-IHELSCTGNK--F-HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 809 (842)
Q Consensus 746 sgs-Dg~I~IwDl~s~~~~~~-i~~~~~~~~~--I-~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~~ 809 (842)
.+. +..|.+.+ +++..... .......... + ..-..+.++.+ ++++.||.|+-+|..+|..+.
T Consensus 170 ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 555 66777766 34421110 1111110000 0 00001123554 557888888888888877664
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.63 E-value=0.15 Score=54.09 Aligned_cols=203 Identities=11% Similarity=0.039 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeC----CC-------cEEEEECCCCceeeEEeecCC--ee
Q 003177 625 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----NS-------EIRYWSINNGSCAGVFKCQSG--AT 691 (842)
Q Consensus 625 ~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~----Dg-------~I~vwDl~t~~~i~~~~~~~~--i~ 691 (842)
.+.+||..+......................+ +.+++.|+. ++ .+.+||..+.+-...-..... -.
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 47889988766433222211111222222333 446666662 12 277889887654432222111 12
Q ss_pred EEEEeCCCCEEEEEEcC-------CeEEEEECCCCeEEEEEeCCCCCE--EEEEEcCCCCEEEEEe--C-----CeEEEE
Q 003177 692 QMRFQPRLGRILAAAIE-------NYISILDVETQVCRLKLQGHKNQV--HSVCWNTSGEYLASVS--D-----ELVRVW 755 (842)
Q Consensus 692 ~v~~sp~g~~l~~~s~d-------g~I~IwDl~t~~~~~~l~~h~~~V--~sl~~spdg~~Lasgs--D-----g~I~Iw 755 (842)
+++.. ++..++.|+.+ ..+.+||+.+.+-...- ....+. .+++. .++++++.|+ + ..+.+|
T Consensus 104 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y 180 (318)
T 2woz_A 104 GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIY 180 (318)
T ss_dssp EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEE
T ss_pred ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEE
Confidence 22222 45666677653 35888999876533221 111111 12222 3566666654 2 258999
Q ss_pred EcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEccCCCC--eeEEEEeCCCCE
Q 003177 756 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL--VSSLAASTVNGM 828 (842)
Q Consensus 756 Dl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d-----g~I~Iwdl~~~~~~~~~~h~~~--V~sla~spdg~~ 828 (842)
|+.+.. ...+..+..... ..+++. -++..+++|+.+ ..+.+||+.+.+...+...... -.+++ ..++++
T Consensus 181 d~~~~~-W~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i 256 (318)
T 2woz_A 181 NPKKGD-WKDLAPMKTPRS-MFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSL 256 (318)
T ss_dssp ETTTTE-EEEECCCSSCCB-SCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEE
T ss_pred cCCCCE-EEECCCCCCCcc-cceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEE
Confidence 988752 111111111111 122222 255666666643 2688999998876644322111 11222 235677
Q ss_pred EEEEeCC
Q 003177 829 VASASHD 835 (842)
Q Consensus 829 Lasgs~D 835 (842)
++.|+.+
T Consensus 257 ~v~GG~~ 263 (318)
T 2woz_A 257 YAIGGFA 263 (318)
T ss_dssp EEECCBC
T ss_pred EEECCee
Confidence 7777754
No 341
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=96.51 E-value=0.0024 Score=72.11 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=5.7
Q ss_pred hhhHHHHHHHhh
Q 003177 53 FEWWSVFWDIFI 64 (842)
Q Consensus 53 ~eww~~Fwd~f~ 64 (842)
.+.|.++.+.+.
T Consensus 337 ~~~~~~~~~~~~ 348 (449)
T 3iot_A 337 SAFWYAVRTAVI 348 (449)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555555443
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.44 E-value=0.059 Score=67.76 Aligned_cols=235 Identities=11% Similarity=0.165 Sum_probs=141.4
Q ss_pred EEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecC-
Q 003177 566 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH- 644 (842)
Q Consensus 566 v~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h- 644 (842)
.-.+|..+.||.=. ..++.|||+++...+..+.-. ..|..=.|-.+. .|+..+ +..|+-|++.....+.+.+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 33466666666654 678999999988777776543 456666776443 444442 4579999998655666666655
Q ss_pred ---ccceEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCceeeEEeecCC-eeEEEE--eCCCCEEEEEEc----C
Q 003177 645 ---STTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSG-ATQMRF--QPRLGRILAAAI----E 708 (842)
Q Consensus 645 ---~~~V~sl~fspdg~~llasgs------~Dg~I~vwDl~t~~~i~~~~~~~~-i~~v~~--sp~g~~l~~~s~----d 708 (842)
...|..-..+++.++++++|= -.|.+.+|.++.+.. ..+..+.. ...+.. .+....+++-.. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 456777788888888877663 357888888875432 11111100 000111 111122333222 2
Q ss_pred CeEEEEECCCC---eEE------EEEeC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003177 709 NYISILDVETQ---VCR------LKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 775 (842)
Q Consensus 709 g~I~IwDl~t~---~~~------~~l~~---h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 775 (842)
+.++|.++... ... ..+.. ......++..++.-.+++..+ -|.|++||+.++ .++..-......
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~~ 302 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGET 302 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCCc
Confidence 68888888542 111 11111 122344666777666666666 999999999998 666665556666
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 776 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 776 I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
|...+.+....-+++....|.|.-..+....++
T Consensus 303 iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred eEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 666665555445666667777777777666655
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.42 E-value=0.3 Score=49.27 Aligned_cols=173 Identities=13% Similarity=-0.005 Sum_probs=99.3
Q ss_pred CcEEEEEeCCCcEEEEECCCCc------eeeEEee--cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE------EE
Q 003177 658 EDLLCSCDNNSEIRYWSINNGS------CAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RL 723 (842)
Q Consensus 658 ~~llasgs~Dg~I~vwDl~t~~------~i~~~~~--~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~------~~ 723 (842)
+.+|++..+| +|+.=....+. ....+.. -..+..++|+|++...++ .+|.++-.+..+... -.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 3456666666 66655554443 1222222 246889999997775544 788888877755111 11
Q ss_pred EEe--CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcee----EEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003177 724 KLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC----IHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 797 (842)
Q Consensus 724 ~l~--~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~----i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I 797 (842)
.+- +-. ...++.|.++|.+.++ +||.|+-++-.+.....- ...-...-..+..+.+.|+|.. +++. |+.+
T Consensus 81 ~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~L-yav~-dg~l 156 (236)
T 1tl2_A 81 KIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYL-YAVH-GQQF 156 (236)
T ss_dssp EEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCE-EEEE-TTEE
T ss_pred Eecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceE-EEEe-CCcE
Confidence 111 111 1468899999999888 889998887644322111 1111112256899999999984 4444 8876
Q ss_pred EEEECCCCe-------EEEEc-cCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 003177 798 ELWNMTENK-------TLTLS-AHDKLVSSLAASTVNGMVASASHDKCVK 839 (842)
Q Consensus 798 ~Iwdl~~~~-------~~~~~-~h~~~V~sla~spdg~~Lasgs~DG~V~ 839 (842)
+-.....+. ...+. ..-.....+.|.+++.++++. +|.++
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 544333211 01111 233345557789988777665 77553
No 344
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.38 E-value=0.13 Score=64.73 Aligned_cols=218 Identities=10% Similarity=0.172 Sum_probs=130.5
Q ss_pred CCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcE
Q 003177 581 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 660 (842)
Q Consensus 581 Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~l 660 (842)
...|.|.|+.++..+..-. -.--+...+|..+.||.-. ..++.|||+++... +..+.- ...|.-=.|-....
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k-lks~~~-~e~VvfWkWis~~~-- 118 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLNT-- 118 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhh-hccccc-CCCceEEEecCCCe--
Confidence 3478888988765442111 1112334567776666654 77999999997553 444432 34566666665433
Q ss_pred EEEEeCCCcEEEEECCC-CceeeEEee-----cCCeeEEEEeCCCCEEEEEEc-------CCeEEEEECCCCeEEEEEeC
Q 003177 661 LCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 727 (842)
Q Consensus 661 lasgs~Dg~I~vwDl~t-~~~i~~~~~-----~~~i~~v~~sp~g~~l~~~s~-------dg~I~IwDl~t~~~~~~l~~ 727 (842)
|+..+ +..|+.|++.. ..+.+.|.. ...|.....+++.++++..+- .|.+.+|..+.+.. ..+.|
T Consensus 119 l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~ieg 196 (1630)
T 1xi4_A 119 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEG 196 (1630)
T ss_pred eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhH
Confidence 32332 67899999964 234333332 345777788888888776553 47888888875432 23445
Q ss_pred CCCCEEEEEEcC---CCCEEEEEe----CCeEEEEEcCCC---CCc---eeEEEeec---CCCceEEEEEeCCCCEEEEE
Q 003177 728 HKNQVHSVCWNT---SGEYLASVS----DELVRVWSIGSG---SKG---ECIHELSC---TGNKFHSCVFHPTFPSLLVI 791 (842)
Q Consensus 728 h~~~V~sl~~sp---dg~~Lasgs----Dg~I~IwDl~s~---~~~---~~i~~~~~---~~~~I~sv~~spdg~~L~sg 791 (842)
|......+.... ...+++.+. .+.++|.++... ... +.+..+-. ...-..++..++....++..
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i 276 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence 554443333321 122333333 268999998653 100 11111111 12334567888888899999
Q ss_pred EcCCeEEEEECCCCeEE
Q 003177 792 GCYETLELWNMTENKTL 808 (842)
Q Consensus 792 s~dg~I~Iwdl~~~~~~ 808 (842)
+..|.|++||+.++.++
T Consensus 277 tk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 277 TKYGYIHLYDLETGTCI 293 (1630)
T ss_pred ecCceEEEEecccchhh
Confidence 99999999999999876
No 345
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.32 E-value=1.6 Score=47.64 Aligned_cols=256 Identities=6% Similarity=-0.043 Sum_probs=120.5
Q ss_pred CCCeEEEEEcC--CCCEEEEEECCC----cEEEEecCCCeEEEEecc--------------CCCCeEEEEEcC-C-CCEE
Q 003177 560 TSKVESCHFSP--DGKLLATGGHDK----KAVLWCTESFTVKSTLEE--------------HTQWITDVRFSP-S-LSRL 617 (842)
Q Consensus 560 ~~~V~sv~fSp--dg~~Lasgs~Dg----~I~vwd~~t~~~~~~l~~--------------h~~~I~~l~fsp-d-g~~L 617 (842)
...|.+|++.| ++.++| ++..| .|...+ +.++.-..+.. +...|.+|++.| + ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 35699999998 454444 44444 444432 33322222211 112578899987 2 4556
Q ss_pred EEEeCCCeEEEEEcCCCCceeeEeec-------------------CccceEEEEEcCCC-CcEEEEEeCCCcEEEEECCC
Q 003177 618 ATSSADRTVRVWDTENPDYSLRTFTG-------------------HSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINN 677 (842)
Q Consensus 618 atgs~Dg~I~IWDl~t~~~~i~~~~~-------------------h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t 677 (842)
+.+...+.|... ..+......+.. ....|.+|.++|.. ..+++ +..++.|...+ ..
T Consensus 132 ~~g~~~ggl~~S--~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v-g~~~ggl~~s~-Dg 207 (394)
T 3b7f_A 132 YAGTSPQGLFRS--TDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI-GMSSGGVFEST-DA 207 (394)
T ss_dssp EEEEETTEEEEE--SSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE-EEETBEEEEES-ST
T ss_pred EEEecCCcEEEE--cCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE-EECCCCEEEEC-CC
Confidence 666566655444 322222222211 12357899998853 33443 43344444332 22
Q ss_pred CceeeEEee--------------cCCeeEEEEeCC-CCEEEEEEcCCeEEEEECCCCeEEEEEeC--CC---CCEEEEEE
Q 003177 678 GSCAGVFKC--------------QSGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG--HK---NQVHSVCW 737 (842)
Q Consensus 678 ~~~i~~~~~--------------~~~i~~v~~sp~-g~~l~~~s~dg~I~IwDl~t~~~~~~l~~--h~---~~V~sl~~ 737 (842)
++.-..+.. ...+.++.+.|. .+.++++.. +.|+..+-. ++.-..+.. .. ..+.++++
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~ 285 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVV 285 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-CeEEEeCCC-CCcceECCCCCCCCCccceEEEEE
Confidence 222222111 123788889885 356666654 445555432 222222211 11 34567888
Q ss_pred cCC--CCEEEEEe-----------CCeEEEEEcCCC-CCceeEEE-eecCCC----ceEEEEEeCCC-CEEEEEEcCCeE
Q 003177 738 NTS--GEYLASVS-----------DELVRVWSIGSG-SKGECIHE-LSCTGN----KFHSCVFHPTF-PSLLVIGCYETL 797 (842)
Q Consensus 738 spd--g~~Lasgs-----------Dg~I~IwDl~s~-~~~~~i~~-~~~~~~----~I~sv~~spdg-~~L~sgs~dg~I 797 (842)
+|. +.+++... ++...||....+ .....+.. +..... ....++++|.. ..|++++.++.|
T Consensus 286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 763 34444331 223455655443 22222211 111000 11357787753 457777666666
Q ss_pred EEEECCCCeEEEEccCCCCeeEEEEe
Q 003177 798 ELWNMTENKTLTLSAHDKLVSSLAAS 823 (842)
Q Consensus 798 ~Iwdl~~~~~~~~~~h~~~V~sla~s 823 (842)
+.-+-.......+..+-..|.+|.|.
T Consensus 366 ~~S~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 366 WASADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EEESSTTSBCEEEECSCSCEEEEEEE
T ss_pred EEECCCCCCceEcccCCCCeeEEEEe
Confidence 54432222233444444567777764
No 346
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.30 E-value=0.12 Score=54.72 Aligned_cols=214 Identities=6% Similarity=-0.039 Sum_probs=104.7
Q ss_pred CCCEEEEEeCC----CeEEEEEcCCCCceee-EeecCccceEEEEEcCCCCcEEEEEeC----C-----CcEEEEECCCC
Q 003177 613 SLSRLATSSAD----RTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDN----N-----SEIRYWSINNG 678 (842)
Q Consensus 613 dg~~Latgs~D----g~I~IWDl~t~~~~i~-~~~~h~~~V~sl~fspdg~~llasgs~----D-----g~I~vwDl~t~ 678 (842)
++.+++.|+.+ ..+.+||..+...... .+....... +++.. ++.+++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 45566666532 3578888876543111 011111111 22222 2446666654 2 46889999876
Q ss_pred ceeeEEeecCC--eeEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-
Q 003177 679 SCAGVFKCQSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS- 748 (842)
Q Consensus 679 ~~i~~~~~~~~--i~~v~~sp~g~~l~~~s~d-----g~I~IwDl~t~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs- 748 (842)
+-...-..... -.+++.. ++..++.|+.+ ..+.+||+.+.+-... +........++.+ ++.+++.|+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred eEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 54332221111 1222222 45556665543 4688999987653322 1111111222222 566666665
Q ss_pred C-----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEccCCCC--
Q 003177 749 D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL-- 816 (842)
Q Consensus 749 D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d-----g~I~Iwdl~~~~~~~~~~h~~~-- 816 (842)
+ ..+.+||+.+..- ..+..+...... .+++.. ++..+++|+.+ ..|.+||+.+.+...+......
T Consensus 178 ~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 254 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEW-RMITAMNTIRSG-AGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS 254 (308)
T ss_dssp CSSCBCCCEEEEETTTTEE-EECCCCSSCCBS-CEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred CCCCcCceEEEEeCCCCeE-eeCCCCCCcccc-ceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc
Confidence 3 3689999877521 111111111111 222222 55566666654 4699999998877654322111
Q ss_pred eeEEEEeCCCCEEEEEeCCC
Q 003177 817 VSSLAASTVNGMVASASHDK 836 (842)
Q Consensus 817 V~sla~spdg~~Lasgs~DG 836 (842)
-.+++. -++++++.|+.++
T Consensus 255 ~~~~~~-~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 255 ALGITV-HQGRIYVLGGYDG 273 (308)
T ss_dssp SCEEEE-ETTEEEEECCBCS
T ss_pred ceEEEE-ECCEEEEEcCcCC
Confidence 112222 2677778877553
No 347
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.23 E-value=0.22 Score=53.61 Aligned_cols=185 Identities=10% Similarity=-0.026 Sum_probs=89.6
Q ss_pred CCCEEEEEEC-C---------CcEEEEecCCCeEEEEeccC---CCCeEEEEEcCCCCEEEEEeCC--------------
Q 003177 571 DGKLLATGGH-D---------KKAVLWCTESFTVKSTLEEH---TQWITDVRFSPSLSRLATSSAD-------------- 623 (842)
Q Consensus 571 dg~~Lasgs~-D---------g~I~vwd~~t~~~~~~l~~h---~~~I~~l~fspdg~~Latgs~D-------------- 623 (842)
++++++.|+. + ..+.+||..+.+-...-... .....++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence 5667777765 2 46889998876543221111 11122233 467788888764
Q ss_pred -------------------------CeEEEEEcCCCCceeeEeecCccce-EEEEEcCCCCcEEEEEeC------CCcEE
Q 003177 624 -------------------------RTVRVWDTENPDYSLRTFTGHSTTV-MSLDFHPSKEDLLCSCDN------NSEIR 671 (842)
Q Consensus 624 -------------------------g~I~IWDl~t~~~~i~~~~~h~~~V-~sl~fspdg~~llasgs~------Dg~I~ 671 (842)
..+.+||+.+.......-....... .+++.. ++.+++.|+. ...+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 220 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVF 220 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceE
Confidence 4789999987654222111111111 223332 2446666653 34677
Q ss_pred EEEC--CCCceeeEEee--cC-CeeEEEEeCCCCEEEEEEcC----------------------CeEEEEECCCC--eEE
Q 003177 672 YWSI--NNGSCAGVFKC--QS-GATQMRFQPRLGRILAAAIE----------------------NYISILDVETQ--VCR 722 (842)
Q Consensus 672 vwDl--~t~~~i~~~~~--~~-~i~~v~~sp~g~~l~~~s~d----------------------g~I~IwDl~t~--~~~ 722 (842)
+||+ .+.+-...-.. .. .....+...++..++.|+.+ ..+.+||+.+. ..+
T Consensus 221 ~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~ 300 (357)
T 2uvk_A 221 ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300 (357)
T ss_dssp EEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE
T ss_pred EEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC
Confidence 7887 44332221111 11 11222233345566666532 25788998865 333
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe-CC------eEEEEEcCCCC
Q 003177 723 LKLQGHKNQVHSVCWNTSGEYLASVS-DE------LVRVWSIGSGS 761 (842)
Q Consensus 723 ~~l~~h~~~V~sl~~spdg~~Lasgs-Dg------~I~IwDl~s~~ 761 (842)
..+........++. -++++++.|+ ++ .|.++++++++
T Consensus 301 ~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 301 GELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp EECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 33332222222222 3566666666 32 46666887763
No 348
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.21 E-value=0.29 Score=54.23 Aligned_cols=143 Identities=10% Similarity=0.114 Sum_probs=92.9
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCceeeEEeec-----CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------
Q 003177 654 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAIENYISILDVETQV-------- 720 (842)
Q Consensus 654 spdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-----~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~-------- 720 (842)
+.++..+++.- ++.||.-++......+.+... ..+..+..+|+|.+++..+ +..|.|..+..+.
T Consensus 29 ~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 34455555433 578888888755445555543 2588899999988877764 5678888776221
Q ss_pred ----EEEEEeC------CCCCEEEEEEcCC---CCEEEEEe-CCeEEEEEcCCCCCceeE--------EEeecCCCceEE
Q 003177 721 ----CRLKLQG------HKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGSKGECI--------HELSCTGNKFHS 778 (842)
Q Consensus 721 ----~~~~l~~------h~~~V~sl~~spd---g~~Lasgs-Dg~I~IwDl~s~~~~~~i--------~~~~~~~~~I~s 778 (842)
..+.+.- ...+|..+.|+|- +..|++-. |+.|++||+..... ++. ..+......|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCEEESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCcchhccccccCCCcccceEEE
Confidence 1223321 2567999999994 34566555 99999999986321 222 111222367899
Q ss_pred EEEeCCCCEEEEEE--cCCeEEEE
Q 003177 779 CVFHPTFPSLLVIG--CYETLELW 800 (842)
Q Consensus 779 v~~spdg~~L~sgs--~dg~I~Iw 800 (842)
++|..++-.|++.+ ..|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999988888866 66777643
No 349
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.13 E-value=0.16 Score=51.36 Aligned_cols=176 Identities=10% Similarity=-0.067 Sum_probs=96.9
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCc-----eeeEeecC--ccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcee----
Q 003177 613 SLSRLATSSADRTVRVWDTENPDY-----SLRTFTGH--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---- 681 (842)
Q Consensus 613 dg~~Latgs~Dg~I~IWDl~t~~~-----~i~~~~~h--~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i---- 681 (842)
....|++...| +|++=....... .... .+. =..+.+++|+|++. |.++ .+|.++-.+..+....
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~-iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~ 77 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATL-IGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMG 77 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEE-EESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHH
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccc-cCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCcccccc
Confidence 34567777777 665544443321 1111 222 24677999999876 4444 5788877776553221
Q ss_pred --eEEee--cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-------EEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 003177 682 --GVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVC-------RLKLQGHKNQVHSVCWNTSGEYLASVSDE 750 (842)
Q Consensus 682 --~~~~~--~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~-------~~~l~~h~~~V~sl~~spdg~~LasgsDg 750 (842)
..+-. -.....+.|.+++...++ .||.|+-++..+... ...-..-=..+..|.|.|+|.+.++. |+
T Consensus 78 s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg 154 (236)
T 1tl2_A 78 RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQ 154 (236)
T ss_dssp HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TT
T ss_pred cccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CC
Confidence 11111 111478899999877766 669998887633110 11111111467999999999999988 88
Q ss_pred eEEEEEcCCCCCce---eEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003177 751 LVRVWSIGSGSKGE---CIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLE 798 (842)
Q Consensus 751 ~I~IwDl~s~~~~~---~i~~~~-~~~~~I~sv~~spdg~~L~sgs~dg~I~ 798 (842)
.++-+...+..... ....+. ..-.....+.|.+++...++. ++.|+
T Consensus 155 ~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 155 QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred cEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 86544333221000 111111 222344556788888754444 66443
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.76 E-value=3.5 Score=46.39 Aligned_cols=231 Identities=10% Similarity=0.018 Sum_probs=114.8
Q ss_pred CeEEEEEcCCCC-EEEEEECCCcEEEEecCCC---eEEEEec---------cCCCCeEEEEEcCC----CCEEEEEeC--
Q 003177 562 KVESCHFSPDGK-LLATGGHDKKAVLWCTESF---TVKSTLE---------EHTQWITDVRFSPS----LSRLATSSA-- 622 (842)
Q Consensus 562 ~V~sv~fSpdg~-~Lasgs~Dg~I~vwd~~t~---~~~~~l~---------~h~~~I~~l~fspd----g~~Latgs~-- 622 (842)
.-+.|+|.|||. .|+++...|.|++++.... ..+..+. ........|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467899999996 4555678899999975422 1222221 11456889999996 333333222
Q ss_pred C----------CeEEEEEcCCC---------CceeeEee--cCccceEEEEEcCCCCcEEEEEeCC--------------
Q 003177 623 D----------RTVRVWDTENP---------DYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNN-------------- 667 (842)
Q Consensus 623 D----------g~I~IWDl~t~---------~~~i~~~~--~h~~~V~sl~fspdg~~llasgs~D-------------- 667 (842)
+ ..|.-|.+... ...+..+. ........|.|.|||..++.+|+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~ 174 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD 174 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence 1 14555665421 11122221 1123457899999987555444321
Q ss_pred --CcEEEEECCCC------c-------------eeeEEe-ecCCeeEEEEeCCC-----C-EEEEEEcCC----eEEEEE
Q 003177 668 --SEIRYWSINNG------S-------------CAGVFK-CQSGATQMRFQPRL-----G-RILAAAIEN----YISILD 715 (842)
Q Consensus 668 --g~I~vwDl~t~------~-------------~i~~~~-~~~~i~~v~~sp~g-----~-~l~~~s~dg----~I~IwD 715 (842)
|.|.-.|.... . ....+. .......++|.|.. . +++++...| .-.|..
T Consensus 175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~ 254 (463)
T 2wg3_C 175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQ 254 (463)
T ss_dssp CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEEE
T ss_pred CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEee
Confidence 23444444431 0 001111 12345678999972 3 344332212 122333
Q ss_pred CCCC------eEEEEEeCCC-CCEEEEEEcCC-------CCEEEEEeCCeEEEEEcCCCCCceeEEEe-e--------cC
Q 003177 716 VETQ------VCRLKLQGHK-NQVHSVCWNTS-------GEYLASVSDELVRVWSIGSGSKGECIHEL-S--------CT 772 (842)
Q Consensus 716 l~t~------~~~~~l~~h~-~~V~sl~~spd-------g~~LasgsDg~I~IwDl~s~~~~~~i~~~-~--------~~ 772 (842)
+..+ .++..+..|. ..+..+.|-.. +.+|+..-.+.|....+...........+ . ..
T Consensus 255 i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 334 (463)
T 2wg3_C 255 IIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYF 334 (463)
T ss_dssp EC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCC
T ss_pred eccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcccccccc
Confidence 3222 2344443221 46778887532 34555433666665555443211111122 1 12
Q ss_pred CCceEEEEEeCCCCEEEEEE
Q 003177 773 GNKFHSCVFHPTFPSLLVIG 792 (842)
Q Consensus 773 ~~~I~sv~~spdg~~L~sgs 792 (842)
...+..+.+.|+|..+++..
T Consensus 335 ~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 335 SGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CSEEEEEEECTTCCEEEEEE
T ss_pred cCcceEEEECCCCCEEEEec
Confidence 35789999999998666654
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.71 E-value=0.22 Score=59.34 Aligned_cols=221 Identities=5% Similarity=-0.008 Sum_probs=110.6
Q ss_pred CCCEEEEEeCC----CeEEEEEcCCCCceeeE-------eecCccceEEEEEcCCCCcEEEEEeCC------CcEEEEEC
Q 003177 613 SLSRLATSSAD----RTVRVWDTENPDYSLRT-------FTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSI 675 (842)
Q Consensus 613 dg~~Latgs~D----g~I~IWDl~t~~~~i~~-------~~~h~~~V~sl~fspdg~~llasgs~D------g~I~vwDl 675 (842)
++.+++.|+.+ ..+.+||..+....... ..........+.+..+ +.+++.|+.+ ..+.+||+
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~-~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN-NQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT-TEEEEECCBSSTTCBCCCCEEEET
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC-CEEEEEcCCCCCCCccccEEEEeC
Confidence 44455555532 35778888765542222 0111112223333214 4466666643 35888999
Q ss_pred CCCceeeEEee--cCCeeEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEEEe-----CCCCCEEEEEEcCC-CCEEE
Q 003177 676 NNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQ-----GHKNQVHSVCWNTS-GEYLA 745 (842)
Q Consensus 676 ~t~~~i~~~~~--~~~i~~v~~sp~g~~l~~~s~dg--~I~IwDl~t~~~~~~l~-----~h~~~V~sl~~spd-g~~La 745 (842)
.+.+-...-.. ...-.+++...++..++.|+.++ .+.+||..+..-...-. .......++.+..+ +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 87654332221 11123334334777888887654 79999998875332211 11222233555555 55666
Q ss_pred EEe---C-----CeEEEEEcCCCCC-----ceeEEEeecCCCceEEEEEeCCCCEEEEEEcC--------CeEEEEECCC
Q 003177 746 SVS---D-----ELVRVWSIGSGSK-----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--------ETLELWNMTE 804 (842)
Q Consensus 746 sgs---D-----g~I~IwDl~s~~~-----~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~d--------g~I~Iwdl~~ 804 (842)
.|+ + +.+.+||+.+..- ...+.........-.+++...++..+++|+.+ ..|.+||+.+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 665 2 3689999988741 12222211111122233344436666666642 4699999998
Q ss_pred CeEEEEccCC--------CCe-eEEEEeCCCCEEEEEeC
Q 003177 805 NKTLTLSAHD--------KLV-SSLAASTVNGMVASASH 834 (842)
Q Consensus 805 ~~~~~~~~h~--------~~V-~sla~spdg~~Lasgs~ 834 (842)
.+........ ..+ .++....++++++.|+.
T Consensus 636 ~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 636 ETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp TEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred CeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 8766322110 000 23333455677777764
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.59 E-value=4.1 Score=45.88 Aligned_cols=229 Identities=13% Similarity=0.072 Sum_probs=118.4
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCC--ceeeEee---------cCccceEEEEEcCC---CCcEEEEEeC-
Q 003177 603 QWITDVRFSPSLS-RLATSSADRTVRVWDTENPD--YSLRTFT---------GHSTTVMSLDFHPS---KEDLLCSCDN- 666 (842)
Q Consensus 603 ~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~t~~--~~i~~~~---------~h~~~V~sl~fspd---g~~llasgs~- 666 (842)
...+.|+|.||+. .|+++...|.|++++.+... ..+..+. ........|+|+|+ +..++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4578999999986 56666789999999754321 1111111 11356789999996 2334433321
Q ss_pred -C----------CcEEEEECCCC----------ceeeEEee---cCCeeEEEEeCCCCEEEEEEcCC-------------
Q 003177 667 -N----------SEIRYWSINNG----------SCAGVFKC---QSGATQMRFQPRLGRILAAAIEN------------- 709 (842)
Q Consensus 667 -D----------g~I~vwDl~t~----------~~i~~~~~---~~~i~~v~~sp~g~~l~~~s~dg------------- 709 (842)
+ ..|.-|.+..+ +.+..+.. ......|.|.||+.++++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 14555665421 22222221 22367899999998777665432
Q ss_pred ----eEEEEECCCC---------------------eEEEEEeCCCCCEEEEEEcCC-----CCE-EEEEeC-C----eEE
Q 003177 710 ----YISILDVETQ---------------------VCRLKLQGHKNQVHSVCWNTS-----GEY-LASVSD-E----LVR 753 (842)
Q Consensus 710 ----~I~IwDl~t~---------------------~~~~~l~~h~~~V~sl~~spd-----g~~-LasgsD-g----~I~ 753 (842)
.|.-+|.+.. ..+.. .+|.+ ...++|+|. |.+ ++.+.. + .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 3444444431 01111 23433 347899986 443 433321 2 234
Q ss_pred EEEcCCCCC---ceeEEEeecCC-CceEEEEEeCCCC------EEEEEEcCCeEEEEECCCCe----EEEEc--------
Q 003177 754 VWSIGSGSK---GECIHELSCTG-NKFHSCVFHPTFP------SLLVIGCYETLELWNMTENK----TLTLS-------- 811 (842)
Q Consensus 754 IwDl~s~~~---~~~i~~~~~~~-~~I~sv~~spdg~------~L~sgs~dg~I~Iwdl~~~~----~~~~~-------- 811 (842)
|..+..+.. ...+..+..+. ..+..+.|..... .++++...+.|....++... ...+.
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 444433321 12333443221 4566677644321 25556666777766665432 11221
Q ss_pred -cCCCCeeEEEEeCCCCEEEEEe
Q 003177 812 -AHDKLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 812 -~h~~~V~sla~spdg~~Lasgs 833 (842)
.....+.++.+.|||.++++..
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 1235789999999999888765
No 353
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=95.16 E-value=3 Score=44.61 Aligned_cols=263 Identities=7% Similarity=0.006 Sum_probs=139.2
Q ss_pred CEEEEEECCCcEEEEecCCC-------eEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc---CCC-----Cc
Q 003177 573 KLLATGGHDKKAVLWCTESF-------TVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENP-----DY 636 (842)
Q Consensus 573 ~~Lasgs~Dg~I~vwd~~t~-------~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl---~t~-----~~ 636 (842)
.++++.+.+|.|+--.+.+. +-+..+. ...+.+..+........|+.-+..|.++...+ ... ..
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 46777888888887654321 1111111 12344555555555667777777887665543 221 11
Q ss_pred eeeEee--cCccceEEEEEcCC--CCcEEEEEeCCCcEEEEECCCC-------ceeeEEeecCCeeEEEEeCCCCEEEEE
Q 003177 637 SLRTFT--GHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPRLGRILAA 705 (842)
Q Consensus 637 ~i~~~~--~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~-------~~i~~~~~~~~i~~v~~sp~g~~l~~~ 705 (842)
++..+. .....|.++...++ ...+++..+.+|.|+...+... .....+...+.+..+........++..
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~ 163 (327)
T 3uc1_A 84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLV 163 (327)
T ss_dssp EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEE
T ss_pred EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEE
Confidence 111111 12345555544332 2446778889999999887542 222233335566666666667889999
Q ss_pred EcCCeEEEEECC--C---------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC----ceeEE--
Q 003177 706 AIENYISILDVE--T---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK----GECIH-- 767 (842)
Q Consensus 706 s~dg~I~IwDl~--t---------~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~----~~~i~-- 767 (842)
+..|.+..+... . |.....+. ....|.++...+++.+|+..+ .|.++.-.+..-.. ..-+.
T Consensus 164 T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~ 242 (327)
T 3uc1_A 164 SANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTV 242 (327)
T ss_dssp ETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESS
T ss_pred ECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEE
Confidence 999999888776 2 12212222 345677776666666777766 88888887643211 01122
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-------EEc--cCCCCeeEEEEeCC-CCEEEEEeCCC
Q 003177 768 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------TLS--AHDKLVSSLAASTV-NGMVASASHDK 836 (842)
Q Consensus 768 ~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-------~~~--~h~~~V~sla~spd-g~~Lasgs~DG 836 (842)
.+......+..+....+...|+..+.+|.+..++...-... ... .....|.++...+. ...+.+.+.+|
T Consensus 243 ~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 243 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp CCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 22222344555555555667888888888777776432211 111 23455666665543 34455666555
No 354
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=95.14 E-value=1.4 Score=52.50 Aligned_cols=235 Identities=9% Similarity=0.007 Sum_probs=122.2
Q ss_pred EcCCCCEEEEEEC-----CCcEEEEecCCCeEEE-Eec-cCCC------CeEEEEEcCCCCEEEEEe-----------CC
Q 003177 568 FSPDGKLLATGGH-----DKKAVLWCTESFTVKS-TLE-EHTQ------WITDVRFSPSLSRLATSS-----------AD 623 (842)
Q Consensus 568 fSpdg~~Lasgs~-----Dg~I~vwd~~t~~~~~-~l~-~h~~------~I~~l~fspdg~~Latgs-----------~D 623 (842)
++|++++++.+-. -..|+++|+.+++.+. .|. .-+. ....++|. |...++.+. ..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCCC
Confidence 8899988776432 2479999999998762 122 0000 11344776 334444432 12
Q ss_pred CeEEEEEcCCCCc-eeeEeecCccce-EEEEEcCCCCc----EEEEEeC---CCcEEEEECCC--CceeeEEeecCCeeE
Q 003177 624 RTVRVWDTENPDY-SLRTFTGHSTTV-MSLDFHPSKED----LLCSCDN---NSEIRYWSINN--GSCAGVFKCQSGATQ 692 (842)
Q Consensus 624 g~I~IWDl~t~~~-~i~~~~~h~~~V-~sl~fspdg~~----llasgs~---Dg~I~vwDl~t--~~~i~~~~~~~~i~~ 692 (842)
..|+.|.+-+... ....+.+....+ .+...+.++.. ++++.+. ...+++.|... ++. ..+...... .
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~-~ 293 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSDA-T 293 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTTC-E
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCcc-e
Confidence 4689998876532 233444433333 34555666664 4555432 24566777653 332 222222222 2
Q ss_pred EEEeCCCCEEEEE----------EcCCeEEEEECCCCe-------EEEE-Ee-CCCCCEEEEEEcCCCCEEEEEe-CC--
Q 003177 693 MRFQPRLGRILAA----------AIENYISILDVETQV-------CRLK-LQ-GHKNQVHSVCWNTSGEYLASVS-DE-- 750 (842)
Q Consensus 693 v~~sp~g~~l~~~----------s~dg~I~IwDl~t~~-------~~~~-l~-~h~~~V~sl~~spdg~~Lasgs-Dg-- 750 (842)
+..+.++..++.. ...+.|.++|+.++. .... +. .....+..+.|..+ .++++.. ++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~ 372 (711)
T 4hvt_A 294 LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVA 372 (711)
T ss_dssp EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEE
T ss_pred EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEE
Confidence 2334444443322 235779999987631 1122 32 23346778888876 4444444 66
Q ss_pred eEEEEEcCCCC-CceeEEEeecCCCceEEEEEeCCCCEEEEE-EcC---CeEEEEECCCCeEE
Q 003177 751 LVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVI-GCY---ETLELWNMTENKTL 808 (842)
Q Consensus 751 ~I~IwDl~s~~-~~~~i~~~~~~~~~I~sv~~spdg~~L~sg-s~d---g~I~Iwdl~~~~~~ 808 (842)
.|.++|+.++. ....+..+.. ...+..+.+.+++..+++. ++. ..++.+|+. ++..
T Consensus 373 ~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~ 433 (711)
T 4hvt_A 373 KVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK 433 (711)
T ss_dssp EEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred EEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence 57778776552 1111111221 2456666667777555444 332 378888887 5443
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=94.99 E-value=5.1 Score=43.55 Aligned_cols=259 Identities=9% Similarity=-0.033 Sum_probs=121.5
Q ss_pred CEEEEEECCCcEEEEecCC-CeEEEEe--ccCCCCeEEEEEcC-CCCEEEEEeCCC----eEEEEEcCCCCceeeEeec-
Q 003177 573 KLLATGGHDKKAVLWCTES-FTVKSTL--EEHTQWITDVRFSP-SLSRLATSSADR----TVRVWDTENPDYSLRTFTG- 643 (842)
Q Consensus 573 ~~Lasgs~Dg~I~vwd~~t-~~~~~~l--~~h~~~I~~l~fsp-dg~~Latgs~Dg----~I~IWDl~t~~~~i~~~~~- 643 (842)
..|.+|+..| +.+++... +.....+ ......|.+|++.| +...|++++..| .|.. ...+......+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~--s~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFR--SDDGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEE--ESSTTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEE--eCCCCCCceECCcc
Confidence 3677777766 55555432 2211111 12345699999998 333444444444 3433 3222211221110
Q ss_pred -------------CccceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCceeeEEe--------------------ecCC
Q 003177 644 -------------HSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK--------------------CQSG 689 (842)
Q Consensus 644 -------------h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~i~~~~--------------------~~~~ 689 (842)
....|.+|++.|.+ ...++++...+.|...+-. ++.-..+. ....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCc
Confidence 11257889998742 2234444445555544322 22211111 1124
Q ss_pred eeEEEEeCC-CCEEEEEEcCCeEEEEECCCCeEEEEEeC-----C--------CCCEEEEEEcCC-CCEEEEEeCCeEEE
Q 003177 690 ATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG-----H--------KNQVHSVCWNTS-GEYLASVSDELVRV 754 (842)
Q Consensus 690 i~~v~~sp~-g~~l~~~s~dg~I~IwDl~t~~~~~~l~~-----h--------~~~V~sl~~spd-g~~LasgsDg~I~I 754 (842)
+.++.+.|. .+.++++..++.|+..+-. ++.-..+.. + ...+.+|.++|+ ...|+++.++.|..
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~ 257 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYR 257 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEE
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEE
Confidence 678888873 4556666666655544322 211111110 0 124889999986 35666667555655
Q ss_pred EEcCCCCCceeEEEeec--CC---CceEEEEEeCC-CCEEEEEEc-----------CCeEEEEECCC-CeEE-EEc---c
Q 003177 755 WSIGSGSKGECIHELSC--TG---NKFHSCVFHPT-FPSLLVIGC-----------YETLELWNMTE-NKTL-TLS---A 812 (842)
Q Consensus 755 wDl~s~~~~~~i~~~~~--~~---~~I~sv~~spd-g~~L~sgs~-----------dg~I~Iwdl~~-~~~~-~~~---~ 812 (842)
.+-. + .....+.. .. ..+..++++|. ...|+++.. ++...||...+ ++.- .+. .
T Consensus 258 s~D~-G---~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp 333 (394)
T 3b7f_A 258 MDRR-E---GVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLP 333 (394)
T ss_dssp EETT-T---TEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSC
T ss_pred eCCC-C---CcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCC
Confidence 5422 2 12222211 11 23567788763 345665542 23344554443 3322 221 1
Q ss_pred CCC-----CeeEEEEeCCC-CEEEEEeCCCcEEE
Q 003177 813 HDK-----LVSSLAASTVN-GMVASASHDKCVKI 840 (842)
Q Consensus 813 h~~-----~V~sla~spdg-~~Lasgs~DG~V~I 840 (842)
... ....++++|.. ..|+.++.++.|..
T Consensus 334 ~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 334 TDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp CSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred CccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 111 12457887743 44666666665543
No 356
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=94.65 E-value=0.01 Score=67.00 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=6.6
Q ss_pred hHHHHHHHhhhcc
Q 003177 55 WWSVFWDIFIART 67 (842)
Q Consensus 55 ww~~Fwd~f~a~~ 67 (842)
.|..+|+++....
T Consensus 335 ~~~~~~~~~~~~~ 347 (449)
T 3iot_A 335 QMSAFWYAVRTAV 347 (449)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 3455555555444
No 357
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.64 E-value=0.77 Score=54.70 Aligned_cols=151 Identities=11% Similarity=0.126 Sum_probs=84.0
Q ss_pred CCCEEEEEECC------CcEEEEecCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCceeeE
Q 003177 571 DGKLLATGGHD------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT 640 (842)
Q Consensus 571 dg~~Lasgs~D------g~I~vwd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~t~~~~i~~ 640 (842)
++++++.|+.+ ..+.+||..+.+-... +...... .+++...++.+++.|+.++ .+.+||+.+.......
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 67788888754 3578899887543322 2111111 2233334788888887755 6899999876542221
Q ss_pred e----ecCccceEEEEEcCCCCcEEEEEeC--C-----CcEEEEECCCCc------eeeEEee--cCC-eeEEEEeCCCC
Q 003177 641 F----TGHSTTVMSLDFHPSKEDLLCSCDN--N-----SEIRYWSINNGS------CAGVFKC--QSG-ATQMRFQPRLG 700 (842)
Q Consensus 641 ~----~~h~~~V~sl~fspdg~~llasgs~--D-----g~I~vwDl~t~~------~i~~~~~--~~~-i~~v~~sp~g~ 700 (842)
. ........++.+..+.+.+++.|+. + ..+.+||+.+.. -...... ... -.+++...++.
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~ 609 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK 609 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence 1 1111222335555553556667765 2 458899998876 2222111 111 12333333356
Q ss_pred EEEEEEc--------CCeEEEEECCCCeEE
Q 003177 701 RILAAAI--------ENYISILDVETQVCR 722 (842)
Q Consensus 701 ~l~~~s~--------dg~I~IwDl~t~~~~ 722 (842)
.++.|+. ...|.+||+.+.+-.
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 6777764 346999999987544
No 358
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.69 E-value=1.9 Score=45.08 Aligned_cols=217 Identities=11% Similarity=0.006 Sum_probs=112.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceee
Q 003177 603 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 682 (842)
Q Consensus 603 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~ 682 (842)
..|..|+.... ..+.-. ||.|+.|-...... +-........|..|+.... +.++. . ||.|+.|-....-.+.
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gq-lg~p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSST-TSCCGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCC-CCCCccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCC
Confidence 35777776543 323335 89999998664332 1111112345777776533 34434 4 8999999876422111
Q ss_pred -EEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCC
Q 003177 683 -VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS 761 (842)
Q Consensus 683 -~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~ 761 (842)
.......|..++... .+.++.. +|.|+.|-....-.+-.-......|..|+...+..+++ . ||.|+.|-.....
T Consensus 96 ~P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l-~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV-K-NGGVIAWGDNYFG 170 (282)
T ss_dssp CCGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-E-TTEEEEEECCTTS
T ss_pred CCcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE-E-CCEEEEecCCCCC
Confidence 111134566666554 3555556 99999997653211000011234566666543333332 2 8999999765432
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 003177 762 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 840 (842)
Q Consensus 762 ~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~I 840 (842)
... ........|..++.-.. +.++. .++.|+.|-....-.+ .-......|..|+..... .++.. ||.|+.
T Consensus 171 qlg---~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~ 241 (282)
T 3qhy_B 171 QTT---VPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVIA 241 (282)
T ss_dssp TTS---CCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEEE
T ss_pred CCC---CceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEEE
Confidence 111 00111244665555443 33444 6889999976543221 111223457777755433 33333 888888
Q ss_pred c
Q 003177 841 W 841 (842)
Q Consensus 841 W 841 (842)
|
T Consensus 242 w 242 (282)
T 3qhy_B 242 W 242 (282)
T ss_dssp E
T ss_pred e
Confidence 7
No 359
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=93.60 E-value=8.9 Score=40.85 Aligned_cols=233 Identities=7% Similarity=0.034 Sum_probs=128.1
Q ss_pred CCCCEEEEEECCCcEEEEecCCCe----EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---CC-----ce
Q 003177 570 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PD-----YS 637 (842)
Q Consensus 570 pdg~~Lasgs~Dg~I~vwd~~t~~----~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t---~~-----~~ 637 (842)
|+..++++.+.+|.|+--.+...+ ....++.+ +.+..+........|+..+..|.++-+.... .. .+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 556678889999999877544211 11123333 3444554444566777778888877665531 11 11
Q ss_pred eeE-e-ecCccceEEEEEcCC--CCcEEEEEeCCCcEEEEECCC--------CceeeEEeecCCeeEEEEeCCCCEEEEE
Q 003177 638 LRT-F-TGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN--------GSCAGVFKCQSGATQMRFQPRLGRILAA 705 (842)
Q Consensus 638 i~~-~-~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t--------~~~i~~~~~~~~i~~v~~sp~g~~l~~~ 705 (842)
+.. + ......|.++...++ ....++.++.+|.++...+.. +.....+...+.+..+........++..
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEE
Confidence 111 1 112234555433332 133455788899999988742 2222233334556666666666789999
Q ss_pred EcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCC---CC-ceeEEE--
Q 003177 706 AIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSG---SK-GECIHE-- 768 (842)
Q Consensus 706 s~dg~I~IwDl~t---------~~~~~~l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~---~~-~~~i~~-- 768 (842)
+.+|.+..|+... |.....+. ....|.++...+++. .|++.+ .|..+..++..- .. ..-+..
T Consensus 162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~ 240 (323)
T 1wp5_A 162 THNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred eCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECee
Confidence 9999998887642 12222232 234566665544444 555555 888887777541 10 111222
Q ss_pred -eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 769 -LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 769 -~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
+......+..+....+...+++.+..|.+..+.+..
T Consensus 241 ~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 222233555444444455678888888776666644
No 360
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.58 E-value=0.96 Score=47.40 Aligned_cols=240 Identities=13% Similarity=0.028 Sum_probs=122.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeEe
Q 003177 562 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 641 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~~i~~~ 641 (842)
.|..|+..... .++. . ||.|+.|-....-.+..-......|..|+...+.. ++. . ||.|+.|-...... +-.-
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gq-lg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQ-TTVP 97 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTST-TCCC
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCC-CCCC
Confidence 46666665432 2333 4 88999986543211111111223577777654432 333 4 89999998664322 1111
Q ss_pred ecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-ceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003177 642 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 720 (842)
Q Consensus 642 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~ 720 (842)
..-...|..|+.... +.+ .-. ||.|+.|-.... .+-........|..++... .+.++.. ||.|+.|-....-
T Consensus 98 ~~~~~~v~~ia~G~~--hs~-al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASY-ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--YTALAVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp GGGSSSEEEEEEETT--EEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEEE-TTEEEEEECCTTS
T ss_pred cccCCCeEEEECcCC--EEE-EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc--CEEEEEE-CCEEEEecCCCCC
Confidence 111246777776643 233 344 999999987642 2211111234465555443 3334444 7999988765321
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003177 721 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 800 (842)
Q Consensus 721 ~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iw 800 (842)
.+..-......|..|+...+.. ++. .||.|+.|-.......- ........|..++.... +.++.. ++.|+.|
T Consensus 171 qlg~p~~~~~~v~~i~~G~~hs-~al-~~G~v~~wG~n~~gqlg---~p~~~~~~v~~i~~G~~--h~~al~-~g~v~~w 242 (282)
T 3qhy_B 171 QTTVPAEAQSGVDDVAGGIFHS-LAL-KDGKVIAWGDNRYKQTT---VPTEALSGVSAIASGEW--YSLALK-NGKVIAW 242 (282)
T ss_dssp TTSCCGGGGSSEEEEEECSSEE-EEE-ETTEEEEEECCTTSTTC---CCGGGGSSCCEEEECSS--CEEEEE-TTEEEEE
T ss_pred CCCCceecCCCeEEEEecCCEE-EEE-ECCeEEEEECCCCCCCC---CCcccCCCceEEEcCCC--EEEEEE-CCEEEEe
Confidence 1000001124577776544433 334 69999999765432111 00111234555554443 334444 8999999
Q ss_pred ECCCCeEEEEccCCCCeeEEEEeCCC
Q 003177 801 NMTENKTLTLSAHDKLVSSLAASTVN 826 (842)
Q Consensus 801 dl~~~~~~~~~~h~~~V~sla~spdg 826 (842)
-......+.+ ...|..|+.....
T Consensus 243 G~n~~gq~~v---~~~v~~iaaG~~h 265 (282)
T 3qhy_B 243 GSSRTAPSSV---QSGVSSIEAGPNA 265 (282)
T ss_dssp STTCCCCGGG---SSCEEEEEECSSC
T ss_pred cCCCCccccC---CCCcEEEEECcCe
Confidence 7655433222 3457777765443
No 361
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.44 E-value=0.48 Score=54.04 Aligned_cols=129 Identities=12% Similarity=0.128 Sum_probs=88.2
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC------ce-------eeEEeecCCeeEEEEeCCCCEEEEEEcCCeE
Q 003177 645 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------SC-------AGVFKCQSGATQMRFQPRLGRILAAAIENYI 711 (842)
Q Consensus 645 ~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~------~~-------i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I 711 (842)
......+.++|||+++++++-.+.+|.++|+++- +. +......-+....+|.++|..+.+...|..|
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceE
Confidence 3455678999999999999999999999999742 11 2333345668899999998544555579999
Q ss_pred EEEECCCC----------eEEEEEeCCCCCEEEEEE------cCCCCEEEEEe----CC----------eEEEEEcCCCC
Q 003177 712 SILDVETQ----------VCRLKLQGHKNQVHSVCW------NTSGEYLASVS----DE----------LVRVWSIGSGS 761 (842)
Q Consensus 712 ~IwDl~t~----------~~~~~l~~h~~~V~sl~~------spdg~~Lasgs----Dg----------~I~IwDl~s~~ 761 (842)
..|++... ..+..+..|-.+- .+.- .+||++|++.. |. .-.++|+.. .
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG-d 479 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG-D 479 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS-S
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC-C
Confidence 99998753 4555666565433 3332 57899999876 44 347888854 4
Q ss_pred CceeEEEeecCCCc
Q 003177 762 KGECIHELSCTGNK 775 (842)
Q Consensus 762 ~~~~i~~~~~~~~~ 775 (842)
+.+.++.......+
T Consensus 480 kM~lv~D~P~~~EP 493 (638)
T 3sbq_A 480 EMKLVHDGPTFAEP 493 (638)
T ss_dssp SCEEEEEEEESSCC
T ss_pred ceEEEecCCCCCCC
Confidence 45666655544333
No 362
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=93.32 E-value=11 Score=41.09 Aligned_cols=165 Identities=10% Similarity=0.086 Sum_probs=98.8
Q ss_pred cEEEEECCCC--ceeeEEeec-------CCeeEEEEe---CC----CCEEEEEEc-CCeEEEEECCCCeEEEEEeC----
Q 003177 669 EIRYWSINNG--SCAGVFKCQ-------SGATQMRFQ---PR----LGRILAAAI-ENYISILDVETQVCRLKLQG---- 727 (842)
Q Consensus 669 ~I~vwDl~t~--~~i~~~~~~-------~~i~~v~~s---p~----g~~l~~~s~-dg~I~IwDl~t~~~~~~l~~---- 727 (842)
.|.+||+.+. +.++.+... +.+..+++. +. +.+++.+.. .+.|.|||+.+++..+.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5667888888 888777653 336777777 22 345555553 57899999999876665421
Q ss_pred C--------------CCCEEEEEEcCC----CCEEEEEeCCeEEEEEcC-----CCCCceeEEEeecCC--CceEEEEEe
Q 003177 728 H--------------KNQVHSVCWNTS----GEYLASVSDELVRVWSIG-----SGSKGECIHELSCTG--NKFHSCVFH 782 (842)
Q Consensus 728 h--------------~~~V~sl~~spd----g~~LasgsDg~I~IwDl~-----s~~~~~~i~~~~~~~--~~I~sv~~s 782 (842)
. ...|..|+++|+ ++.|+...=..-++|.+. .......+..+-... ..-...+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 0 136788999998 788887772223344432 221112233222222 334456676
Q ss_pred -CCCCEEEEEEcCCeEEEEECCC-C----eEE--EEccCCCCeeEEEEeCCCCEEEEEe
Q 003177 783 -PTFPSLLVIGCYETLELWNMTE-N----KTL--TLSAHDKLVSSLAASTVNGMVASAS 833 (842)
Q Consensus 783 -pdg~~L~sgs~dg~I~Iwdl~~-~----~~~--~~~~h~~~V~sla~spdg~~Lasgs 833 (842)
.+|..+++--....|..|+..+ . ... .....-..+..+.+..+|.+.++++
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 5665555555667999999876 1 112 2222233577888888887666654
No 363
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=93.13 E-value=12 Score=40.79 Aligned_cols=229 Identities=10% Similarity=0.099 Sum_probs=115.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc----------eeeEeec-CccceEEEEEcCCCCcEEEEEeCCCcEEE
Q 003177 604 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY----------SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRY 672 (842)
Q Consensus 604 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~----------~i~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~v 672 (842)
.|..|+- .....+.-..||.|+.|-...... ....+.. ....+..++++.-..+ .+.-..||.|+.
T Consensus 54 ~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h-~~al~~~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKH-CLALSSEGEVYS 130 (389)
T ss_dssp CEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSE-EEEEETTSCEEE
T ss_pred ceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCe-EEEEcCCCCEEE
Confidence 3445543 334556667889999996442110 0111111 1223444555544343 445567999999
Q ss_pred EECCCCc---------e--eeEEeecC--CeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-----------eEEEEEeC-
Q 003177 673 WSINNGS---------C--AGVFKCQS--GATQMRFQPRLGRILAAAIENYISILDVETQ-----------VCRLKLQG- 727 (842)
Q Consensus 673 wDl~t~~---------~--i~~~~~~~--~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~-----------~~~~~l~~- 727 (842)
|-....- . ...+.... .|..++ ....+.++...+|.|+.|-.... .....+..
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va--~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~ 208 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA--AGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEAL 208 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE--ECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEE--eCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEeccc
Confidence 9754311 0 11111112 344443 44567778888999999965320 11111211
Q ss_pred CCCCEEEEEEcCCCCE-EEEEeCCeEEEEEcCCCC------Cc--eeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeE
Q 003177 728 HKNQVHSVCWNTSGEY-LASVSDELVRVWSIGSGS------KG--ECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETL 797 (842)
Q Consensus 728 h~~~V~sl~~spdg~~-LasgsDg~I~IwDl~s~~------~~--~~i~~~~~-~~~~I~sv~~spdg~~L~sgs~dg~I 797 (842)
....|..++......+ ++...|+.|+.|-..... .. .....+.. ....|..++.- ..+.++...+|.|
T Consensus 209 ~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v 286 (389)
T 3kci_A 209 QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAV 286 (389)
T ss_dssp TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCE
T ss_pred CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeE
Confidence 2345677766443334 444449999999754211 00 11111111 12245555543 3456677888999
Q ss_pred EEEECCCC----------e--EEEEcc-CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 798 ELWNMTEN----------K--TLTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 798 ~Iwdl~~~----------~--~~~~~~-h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
+.|-.... . +..+.. ....|..|+.. ....+....||.|+.|
T Consensus 287 ~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 287 YTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTW 341 (389)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred EEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEe
Confidence 99975321 1 112221 12346666543 3344555788888887
No 364
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=92.77 E-value=11 Score=39.74 Aligned_cols=229 Identities=9% Similarity=0.051 Sum_probs=127.8
Q ss_pred CCCCEEEEEECCCcEEEEecCCCeEE---------EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc----
Q 003177 570 PDGKLLATGGHDKKAVLWCTESFTVK---------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---- 636 (842)
Q Consensus 570 pdg~~Lasgs~Dg~I~vwd~~t~~~~---------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~---- 636 (842)
++..++++.+.+|.|+-..+...+.. ..+..+ +.+..+........++..+..|.++-+....-..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 45668889999999998876543211 122333 3455555555566788888999887776542100
Q ss_pred ----e---eeEeecCccceEEEEEcC---CCCcEEEEEeCCCcEEEEECCC-------CceeeEEeecCCeeEEEEeCCC
Q 003177 637 ----S---LRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRL 699 (842)
Q Consensus 637 ----~---i~~~~~h~~~V~sl~fsp---dg~~llasgs~Dg~I~vwDl~t-------~~~i~~~~~~~~i~~v~~sp~g 699 (842)
. ...+. ....|.++...+ +.. .++..+..|.++...+.. |.....+...+.+..+......
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~-~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDA-YLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTC-EEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCC-EEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence 0 01122 223455544332 233 455678899999988743 2222233334556666666666
Q ss_pred CEEEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC----cee
Q 003177 700 GRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK----GEC 765 (842)
Q Consensus 700 ~~l~~~s~dg~I~IwDl~t---------~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~----~~~ 765 (842)
..++..+.+|.+..+.... |.....+. ....|.++....++..|++.+ .|.++..++..-.. ..-
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kG 241 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATG 241 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCC
Confidence 7899999999999887653 22222333 245566666555556555655 88888888753210 111
Q ss_pred EEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 766 IHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 802 (842)
Q Consensus 766 i~~~~---~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl 802 (842)
+..+. .....+..+....+...++..+..|.+.-...
T Consensus 242 v~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 242 YTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA 281 (312)
T ss_dssp EECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred EEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 22222 22344444433345556777777775444444
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=92.18 E-value=11 Score=39.03 Aligned_cols=197 Identities=10% Similarity=-0.015 Sum_probs=112.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEE---EcCCCCceeeEeecCccceEEEEEcCC-CCcEEEEEeCCCcEEEEECCCC
Q 003177 603 QWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG 678 (842)
Q Consensus 603 ~~I~~l~fspdg~~Latgs~Dg~I~IW---Dl~t~~~~i~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vwDl~t~ 678 (842)
+.+..+.......+|+..+.+|.++-- ++......- +......|..+.. .+ ....++..+.+|.|+...+...
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~--ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS--LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC--CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc--cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 345544444444566666677766543 332211100 1223455666544 32 2346668889999999987543
Q ss_pred ------ceeeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcCCCCE
Q 003177 679 ------SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEY 743 (842)
Q Consensus 679 ------~~i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t---------~~~~~~l~~h~~~V~sl~~spdg~~ 743 (842)
.....+...+.+..+........++..+..|.++.+.... |.....+. ....|.++...+++.+
T Consensus 101 ~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 101 EYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPY 179 (276)
T ss_dssp TTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSE
T ss_pred hhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCE
Confidence 2222333345666666666667899999999998887532 22222333 2355666655555656
Q ss_pred EEEEe-CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCC
Q 003177 744 LASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTE 804 (842)
Q Consensus 744 Lasgs-Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~I--wdl~~ 804 (842)
++..+ .|.++...+..-.. ..-+..+ ...+.+..+....+...++..+.+|.+.. ++...
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 66666 88888887643211 1122223 23445555544444556888888887777 77643
No 366
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=91.96 E-value=21 Score=42.84 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=78.2
Q ss_pred CCCeEEEEEcCC-CCEEEEEECCCcEEEEecCCCeEEEEeccC-------CCCeEEEEEcCC-CCEEEEEeCCCe----E
Q 003177 560 TSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS-LSRLATSSADRT----V 626 (842)
Q Consensus 560 ~~~V~sv~fSpd-g~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h-------~~~I~~l~fspd-g~~Latgs~Dg~----I 626 (842)
.+.|.+|+++|. ...+++++..+.|...+ +.++.-..+..+ ...|.+|++.|. ...++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 457999999985 35666677777776665 344444444332 246999999984 344544433211 3
Q ss_pred EEEEcCCCCceeeEeecC---------ccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-------ecCCe
Q 003177 627 RVWDTENPDYSLRTFTGH---------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGA 690 (842)
Q Consensus 627 ~IWDl~t~~~~i~~~~~h---------~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-------~~~~i 690 (842)
.||....+.......... ...+..++++|.....++.+...+.|. .....|+.-..+. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 455444433322222110 013567888886555565665344332 2222232212111 12357
Q ss_pred eEEEEeCC-CCEEEEEEcC
Q 003177 691 TQMRFQPR-LGRILAAAIE 708 (842)
Q Consensus 691 ~~v~~sp~-g~~l~~~s~d 708 (842)
..+.++|. .+.++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 78888884 4466666655
No 367
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=91.77 E-value=15 Score=38.77 Aligned_cols=232 Identities=9% Similarity=0.065 Sum_probs=127.7
Q ss_pred CCCCEEEEEECCCcEEEEecCCCeEEE---------EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC---CCC--
Q 003177 570 PDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD-- 635 (842)
Q Consensus 570 pdg~~Lasgs~Dg~I~vwd~~t~~~~~---------~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---t~~-- 635 (842)
|+..++++.+.+|.|+--.+.+.+... .++.+ +.+..+........|+..+..|.++-+... ...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 345678889999999887766543221 12223 344444444455677777788887666543 111
Q ss_pred ---ceee---EeecCccceEEEEEcC--CCCcEEEEEeCCCcEEEEECCC-------CceeeEEeecCCeeEEEEeCCCC
Q 003177 636 ---YSLR---TFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRLG 700 (842)
Q Consensus 636 ---~~i~---~~~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~vwDl~t-------~~~i~~~~~~~~i~~v~~sp~g~ 700 (842)
.++. .+. ....|.++...+ +....++..+.+|.++...+.. +.....+...+.+..+.......
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence 1111 112 234565554322 1233455778899999987742 22222233345566666666667
Q ss_pred EEEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------Cce
Q 003177 701 RILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGE 764 (842)
Q Consensus 701 ~l~~~s~dg~I~IwDl~t---------~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~------~~~ 764 (842)
.++..+.+|.+..++... |.....+. ....|.++....++..|++.+ .|.++..++..-. ...
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 899999999988887642 22222232 345676766555556666666 8888888773221 111
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 765 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 765 ~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
....+....+.+..+....+...|+..+.+|.+.-+++..
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 1222333335555554444456677888888776666644
No 368
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=91.59 E-value=18 Score=39.32 Aligned_cols=233 Identities=11% Similarity=0.057 Sum_probs=132.2
Q ss_pred EcCCCCEEEEEECCCcEEEEecCC---------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---C-
Q 003177 568 FSPDGKLLATGGHDKKAVLWCTES---------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---P- 634 (842)
Q Consensus 568 fSpdg~~Lasgs~Dg~I~vwd~~t---------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t---~- 634 (842)
+-++..++++.+.+|.|+--.+.. +..-..++. .+.+..+........|+..+..|.++-+.... .
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346778999999999999865432 223334443 45566666666667788888888877665431 1
Q ss_pred ----Cceee---EeecCccceEEEEEcC--CCCcEEEEEeCCCcEEEEECCC-------CceeeEEeecCCeeEEEEeCC
Q 003177 635 ----DYSLR---TFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPR 698 (842)
Q Consensus 635 ----~~~i~---~~~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~vwDl~t-------~~~i~~~~~~~~i~~v~~sp~ 698 (842)
...+. .+. ....|.++.... +....|+.++..|.++...+.. +.....+...+.+..+.....
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECS
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCC
Confidence 11111 112 234555554432 1233566788899999988643 222223333455666666666
Q ss_pred CCEEEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcC------------------------------
Q 003177 699 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNT------------------------------ 739 (842)
Q Consensus 699 g~~l~~~s~dg~I~IwDl~t---------~~~~~~l~~h~~~V~sl~~sp------------------------------ 739 (842)
...++..+..|.+..|+... |.....+. ....|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 67889999999888887542 22222222 234555554443
Q ss_pred -----CCCEEEEEe-CCeEEEEEcCCCCC----ceeEE--EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 740 -----SGEYLASVS-DELVRVWSIGSGSK----GECIH--ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 740 -----dg~~Lasgs-Dg~I~IwDl~s~~~----~~~i~--~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
++..|++.+ .|..+...+..-.. ..-+. .+....+.+..+.+..+...|+..+..|.+.-..+.
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS 315 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence 345666666 88888887653211 11122 222233455555554555677777888866666553
No 369
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=90.96 E-value=21 Score=39.05 Aligned_cols=226 Identities=5% Similarity=-0.004 Sum_probs=116.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-----------eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEE
Q 003177 604 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY-----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 672 (842)
Q Consensus 604 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~-----------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~v 672 (842)
.|..|+.. ..+.+.-..||.|+.|-...... ..-........|..|+... ...+.-..||.|+.
T Consensus 76 ~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~---~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 76 DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD---SHSACLLEDGRVFA 150 (423)
T ss_dssp SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS---SEEEEEETTSCEEE
T ss_pred CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc---CeEEEEeCCCeEEE
Confidence 46666653 45666677899999996543110 0111111234566666543 23445567999999
Q ss_pred EEC--CC-Cce--------eeEEee--cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC--------------------
Q 003177 673 WSI--NN-GSC--------AGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ-------------------- 719 (842)
Q Consensus 673 wDl--~t-~~~--------i~~~~~--~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~-------------------- 719 (842)
|-. .. +.+ ...... ...|..++. ...+.++...+|.|+.|-....
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 228 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIAS--GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 228 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTT
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEec--CCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccc
Confidence 985 32 211 111111 223444443 4467778888999999953311
Q ss_pred ---eEEEEEeCCCCCEEEEEEcCCCCEEEE-EeCCeEEEEEcCCCC--------CceeEEEeecCCCceEEEEEeCCCCE
Q 003177 720 ---VCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGSGS--------KGECIHELSCTGNKFHSCVFHPTFPS 787 (842)
Q Consensus 720 ---~~~~~l~~h~~~V~sl~~spdg~~Las-gsDg~I~IwDl~s~~--------~~~~i~~~~~~~~~I~sv~~spdg~~ 787 (842)
.+..........|..|+..... .++. ..++.|+.|-..... ..............|..++. ...+
T Consensus 229 ~~~~p~~v~~~~~~~v~~i~~g~~~-~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~h 305 (423)
T 3mvd_K 229 DLLRPTQLIITRAKPFEAIWATNYC-TFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHH 305 (423)
T ss_dssp TTSSCEEECCTTCCCEEEEEEETTE-EEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSE
T ss_pred cccCCeEEeecCCccEEEEEECCcE-EEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCe
Confidence 1111111223356666544222 2222 248888888754321 01111112212344554443 3446
Q ss_pred EEEEEcCCeEEEEECCCC-------------eEEEEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 788 LLVIGCYETLELWNMTEN-------------KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 788 L~sgs~dg~I~Iwdl~~~-------------~~~~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
.++...+|.|+.|-.... .+..+..-...|..|+... .+.+.-..||.|+.|
T Consensus 306 t~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~w 370 (423)
T 3mvd_K 306 TVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSW 370 (423)
T ss_dssp EEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEE
T ss_pred EEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEE
Confidence 677788899999965321 1112222333677777653 333444688888888
No 370
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=90.89 E-value=21 Score=38.79 Aligned_cols=225 Identities=8% Similarity=0.007 Sum_probs=119.5
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCC------C--CceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEEC---CC-
Q 003177 610 FSPSLSRLATSSADRTVRVWDTEN------P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN- 677 (842)
Q Consensus 610 fspdg~~Latgs~Dg~I~IWDl~t------~--~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl---~t- 677 (842)
+-++..++++.+.+|.|+--.+.. + ......+. ....+..+........++ ..+..|.++-+.. ..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll-~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLL-TFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEE-EEETTSEEEEEEGGGSCBC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEE-EEeCCCeEEEEEHHHCcCC
Confidence 346788999999999999876532 1 11112222 344555555555545455 4455776665543 22
Q ss_pred -----Cceee---EEeecCCeeEEEEeC---CCCEEEEEEcCCeEEEEECCC-------CeEEEEEeCCCCCEEEEEEcC
Q 003177 678 -----GSCAG---VFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNT 739 (842)
Q Consensus 678 -----~~~i~---~~~~~~~i~~v~~sp---~g~~l~~~s~dg~I~IwDl~t-------~~~~~~l~~h~~~V~sl~~sp 739 (842)
|..+. .+.....|..+.... ...+++.++..|.++...+.. +.....+.. ...+..+....
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~ 159 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD 159 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence 22211 122234565554432 356899999999999887542 233333433 34455554444
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCC------CceeEEEeecCCCceEEEEEeC-----------------------------
Q 003177 740 SGEYLASVS-DELVRVWSIGSGS------KGECIHELSCTGNKFHSCVFHP----------------------------- 783 (842)
Q Consensus 740 dg~~Lasgs-Dg~I~IwDl~s~~------~~~~i~~~~~~~~~I~sv~~sp----------------------------- 783 (842)
....|+..+ .|.+..|+...-. .......+. ....|.++...+
T Consensus 160 ~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~ 238 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVI 238 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC---------------------------
T ss_pred CCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccc
Confidence 444444444 8888778754311 011111122 234455544443
Q ss_pred ------CCCEEEEEEcCCeEEEEECCCCeE--------E--EEccCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 003177 784 ------TFPSLLVIGCYETLELWNMTENKT--------L--TLSAHDKLVSSLAASTVNGMVASASHDKCV 838 (842)
Q Consensus 784 ------dg~~L~sgs~dg~I~Iwdl~~~~~--------~--~~~~h~~~V~sla~spdg~~Lasgs~DG~V 838 (842)
++..|++.+..|..+...+..... . .+....+.+..+.+..+...|+..+..|.+
T Consensus 239 ~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~ 309 (370)
T 3l6v_A 239 DVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTL 309 (370)
T ss_dssp --------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCE
T ss_pred ccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeE
Confidence 446899999999888887743221 1 222333455555444444455555566654
No 371
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=89.67 E-value=13 Score=44.22 Aligned_cols=224 Identities=10% Similarity=0.053 Sum_probs=113.3
Q ss_pred eEEEE-EcCCCCEEEEE-eCC----CeEEEEEcCCCCceeeEee-cCcc------ceEEEEEcCCCCcEEEEEe------
Q 003177 605 ITDVR-FSPSLSRLATS-SAD----RTVRVWDTENPDYSLRTFT-GHST------TVMSLDFHPSKEDLLCSCD------ 665 (842)
Q Consensus 605 I~~l~-fspdg~~Latg-s~D----g~I~IWDl~t~~~~i~~~~-~h~~------~V~sl~fspdg~~llasgs------ 665 (842)
...+. ++|++++++.+ |.. ..|+++|+.+++..-..+. .... ....++|. +++.++++..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCc
Confidence 33444 88898877654 322 3799999998654222222 0000 11344776 3344554421
Q ss_pred ----CCCcEEEEECCCCc--eeeEEeecC-C-eeEEEEeCCCCE-----EEEEEcC---CeEEEEECCC--CeEEEEEeC
Q 003177 666 ----NNSEIRYWSINNGS--CAGVFKCQS-G-ATQMRFQPRLGR-----ILAAAIE---NYISILDVET--QVCRLKLQG 727 (842)
Q Consensus 666 ----~Dg~I~vwDl~t~~--~i~~~~~~~-~-i~~v~~sp~g~~-----l~~~s~d---g~I~IwDl~t--~~~~~~l~~ 727 (842)
....|+.|.+-+.. -...+.... . ......++++++ ++..+.+ ..+++.|... ++. ..+..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 288 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINM 288 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeec
Confidence 12468888887642 233343322 2 234445566652 3333322 4567777653 332 22322
Q ss_pred CCCCEEEEEEcCCCCEEEEE-----------eCCeEEEEEcCCCCCc----eeEEE-e-ecCCCceEEEEEeCCCCEEEE
Q 003177 728 HKNQVHSVCWNTSGEYLASV-----------SDELVRVWSIGSGSKG----ECIHE-L-SCTGNKFHSCVFHPTFPSLLV 790 (842)
Q Consensus 728 h~~~V~sl~~spdg~~Lasg-----------sDg~I~IwDl~s~~~~----~~i~~-~-~~~~~~I~sv~~spdg~~L~s 790 (842)
.... .+..+.++.+++.. ..+.|.+.|+.+.... ..... + ......+..+.+..+ ..+++
T Consensus 289 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 2221 12334455555522 1557889998764210 11111 2 223445677888876 45556
Q ss_pred EEcCC--eEEEEECCCCe--EEE-Ec-cCCCCeeEEEEeCCCC-EEEEEe
Q 003177 791 IGCYE--TLELWNMTENK--TLT-LS-AHDKLVSSLAASTVNG-MVASAS 833 (842)
Q Consensus 791 gs~dg--~I~Iwdl~~~~--~~~-~~-~h~~~V~sla~spdg~-~Lasgs 833 (842)
...++ .|+++|+.++. ... +. ...+.|..+.+++++. ++++.+
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~s 415 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE 415 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEE
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEe
Confidence 66666 67888877664 212 21 1134566666667665 444443
No 372
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=89.39 E-value=43 Score=40.15 Aligned_cols=144 Identities=11% Similarity=0.145 Sum_probs=71.9
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeeEeecC-------ccceEEEEEcCCCCcEEEEEeCCCc----
Q 003177 602 TQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDNNSE---- 669 (842)
Q Consensus 602 ~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h-------~~~V~sl~fspdg~~llasgs~Dg~---- 669 (842)
...|.+|+++|. ...++.++..+.|...+ .+......+..+ ...|.+|+++|.....++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 468999999985 45666777777665444 222223333221 2469999999864444444432211
Q ss_pred EEEE-ECCCCceeeEEeec--------C--CeeEEEEeCCC-CEEEEEEcCCeEEEEECCCC---eEEEEEe---CCCCC
Q 003177 670 IRYW-SINNGSCAGVFKCQ--------S--GATQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQ---GHKNQ 731 (842)
Q Consensus 670 I~vw-Dl~t~~~i~~~~~~--------~--~i~~v~~sp~g-~~l~~~s~dg~I~IwDl~t~---~~~~~l~---~h~~~ 731 (842)
-.|| ....|+.-..+... . .+..++++|.. +.++++...+.|.. ..+.+ +.+..+. .....
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTC
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCC
Confidence 2233 33334332222211 1 24568888754 44555543443322 22222 2221111 11245
Q ss_pred EEEEEEcCC-CCEEEEEe
Q 003177 732 VHSVCWNTS-GEYLASVS 748 (842)
Q Consensus 732 V~sl~~spd-g~~Lasgs 748 (842)
+..+.++|. +..|+++.
T Consensus 171 ~~~i~~~p~~~~~~~~~~ 188 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASA 188 (789)
T ss_dssp EEEEEECTTSTTCEEEEE
T ss_pred eEEEEECCCCCCEEEEEE
Confidence 788999874 34455544
No 373
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=89.38 E-value=25 Score=37.42 Aligned_cols=193 Identities=11% Similarity=0.029 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEe---cCC------CeEEEE---eccCCCCeEEEEEcC---CCCEEEEEeCCCeEE
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWC---TES------FTVKST---LEEHTQWITDVRFSP---SLSRLATSSADRTVR 627 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd---~~t------~~~~~~---l~~h~~~I~~l~fsp---dg~~Latgs~Dg~I~ 627 (842)
+..+........|+.-+..|.++... +.. |..+.. +. ....|.++...+ +..++++++.+|.|+
T Consensus 44 ~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iK 122 (327)
T 3uc1_A 44 VAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVK 122 (327)
T ss_dssp EEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEE
Confidence 44444444445566666677766554 332 233211 22 234455554333 578999999999999
Q ss_pred EEEcCCCC------ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECC--C----C-----ceeeEEeecCCe
Q 003177 628 VWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--N----G-----SCAGVFKCQSGA 690 (842)
Q Consensus 628 IWDl~t~~------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~--t----~-----~~i~~~~~~~~i 690 (842)
...+..-. .....+.. ...+..+........++ ..+..|.+..+.+. . + .....+.....|
T Consensus 123 r~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il-l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~V 200 (327)
T 3uc1_A 123 KSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL-LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRL 200 (327)
T ss_dssp EEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE-EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCE
T ss_pred EeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE-EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEE
Confidence 98875411 11112333 34455554444444444 56668888888776 2 1 111122334557
Q ss_pred eEEEEeCCCCEEEEEEcCCeEEEEECCCC-------eEE--EEEeCCCCCEEEEEEcCC-CCEEEEEeCCeEEEEEcC
Q 003177 691 TQMRFQPRLGRILAAAIENYISILDVETQ-------VCR--LKLQGHKNQVHSVCWNTS-GEYLASVSDELVRVWSIG 758 (842)
Q Consensus 691 ~~v~~sp~g~~l~~~s~dg~I~IwDl~t~-------~~~--~~l~~h~~~V~sl~~spd-g~~LasgsDg~I~IwDl~ 758 (842)
..+...+.+..++.++..|.++...+..- +-+ ..+..-.+.+..+....+ ..+++...+|.+..+++.
T Consensus 201 v~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 201 LSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 77766666778999999999988775421 112 222221334555444333 344444447877777654
No 374
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=88.90 E-value=25 Score=36.91 Aligned_cols=223 Identities=10% Similarity=0.031 Sum_probs=115.5
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCce--------eeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEEC---CC---
Q 003177 612 PSLSRLATSSADRTVRVWDTENPDYS--------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN--- 677 (842)
Q Consensus 612 pdg~~Latgs~Dg~I~IWDl~t~~~~--------i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl---~t--- 677 (842)
|+..++++.+.+|.|+--.+.+-... ...+..+ ..+..+........++ ..+..|.++-+.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll-~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHIL-CFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCCCCS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEE-EEECCCEEEEEEhhHCcCCCC
Confidence 35567889999999987766532110 0112222 3343333333334444 4455777655544 22
Q ss_pred ---Cceee---EEeecCCeeEEEEe---CCCCEEEEEEcCCeEEEEECCC-------CeEEEEEeCCCCCEEEEEEcCC-
Q 003177 678 ---GSCAG---VFKCQSGATQMRFQ---PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTS- 740 (842)
Q Consensus 678 ---~~~i~---~~~~~~~i~~v~~s---p~g~~l~~~s~dg~I~IwDl~t-------~~~~~~l~~h~~~V~sl~~spd- 740 (842)
|..+. .+.....|..+... .++.+++.++..|.++...+.. +.....+..+ +.+..+....+
T Consensus 79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 22111 12233446555442 3456799999999999887642 2222334434 45555544444
Q ss_pred CCEEEEEeCCeEEEEEcCCCCC------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------
Q 003177 741 GEYLASVSDELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-------- 806 (842)
Q Consensus 741 g~~LasgsDg~I~IwDl~s~~~------~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~-------- 806 (842)
..+++..++|.+..++...-.. ......+. .+..|..+....++..|++.+..|.++-.++....
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG 236 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 236 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC
Confidence 4444445588888887643210 11111222 24556666555566679999999988888763221
Q ss_pred EE--EEccCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 003177 807 TL--TLSAHDKLVSSLAASTVNGMVASASHDKCV 838 (842)
Q Consensus 807 ~~--~~~~h~~~V~sla~spdg~~Lasgs~DG~V 838 (842)
.. .+....+.+..+....+..-|+..+.+|.+
T Consensus 237 ~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ 270 (307)
T 1zi0_A 237 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTL 270 (307)
T ss_dssp EESSCCCTTTCSEEEEEEECTTCEEEEEESSCCE
T ss_pred EEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcE
Confidence 11 222233455554443444445555666654
No 375
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=88.40 E-value=25 Score=36.31 Aligned_cols=194 Identities=10% Similarity=0.004 Sum_probs=105.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEE---ecCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC--
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENP-- 634 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vw---d~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~t~-- 634 (842)
+.|.++.......+|+.-+.+|.++-- ++........+. ....|..+.... +..++++.+.+|.|+...+..-
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 345555444444556666677776653 333222111133 345566664421 4679999999999999987642
Q ss_pred ---CceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC---------CceeeEEeecCCeeEEEEeCCCCEE
Q 003177 635 ---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQPRLGRI 702 (842)
Q Consensus 635 ---~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t---------~~~i~~~~~~~~i~~v~~sp~g~~l 702 (842)
......+.. ...+..+........ ++..+..|.++.++... |.....+.....+..+....++..+
T Consensus 103 ~~~G~~~i~lke-gD~l~~~~~~~~~~~-ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 103 KAQGMPIIKLTE-GDEVVSIASSVDETH-ILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp CSTTEECSCCCT-TCCEEEEEECCSSCE-EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hcCCeEEEecCC-CCEEEEEEEeCCCCE-EEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 111112222 345555555544444 44666788888887532 1122223334556666666667789
Q ss_pred EEEEcCCeEEEEECCC-------CeEEEEEeCCCCCEEEEEE-cCCCCEEEEEeCCeEEE--EEcC
Q 003177 703 LAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCW-NTSGEYLASVSDELVRV--WSIG 758 (842)
Q Consensus 703 ~~~s~dg~I~IwDl~t-------~~~~~~l~~h~~~V~sl~~-spdg~~LasgsDg~I~I--wDl~ 758 (842)
+..+..|.++...+.. ++-+..+ ...+.+..+.. ..+..+++...+|.+.. +++.
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 9999999988887642 2222222 23344544433 32333444444777666 6654
No 376
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=87.04 E-value=37 Score=36.69 Aligned_cols=234 Identities=10% Similarity=0.054 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEecCC-----------CeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003177 563 VESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWD 630 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t-----------~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 630 (842)
|..|+.. ....+.-..||.|+.|-... ......+.. ....+..++++......+.-..||.|+.|-
T Consensus 55 i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 55 PVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred eEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 4445443 33455556788888885321 111122222 223455667776667777778899999996
Q ss_pred cCCCC---------c-eeeEeec-CccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc---------ee--eEEee--
Q 003177 631 TENPD---------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------CA--GVFKC-- 686 (842)
Q Consensus 631 l~t~~---------~-~i~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~---------~i--~~~~~-- 686 (842)
..... . ....+.. ....|..|+... ...+....||.|+.|-....- .. ..+..
T Consensus 133 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 133 EAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred CCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 54211 0 0111111 122566666542 234455679999999764310 11 11111
Q ss_pred cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC----------C-eEEEEEeC-CCCCEEEEEEcCCCCEEEEEeCCeEEE
Q 003177 687 QSGATQMRFQPRLGRILAAAIENYISILDVET----------Q-VCRLKLQG-HKNQVHSVCWNTSGEYLASVSDELVRV 754 (842)
Q Consensus 687 ~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t----------~-~~~~~l~~-h~~~V~sl~~spdg~~LasgsDg~I~I 754 (842)
...+..++......+.++...+|.|+.|-... . .....+.. ....|..|+.-.+ ..++...||.|+.
T Consensus 210 ~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~-hs~alt~~G~v~~ 288 (389)
T 3kci_A 210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ-FSVALTKSGAVYT 288 (389)
T ss_dssp TSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT-EEEEEETTSCEEE
T ss_pred CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC-EEEEEeCCCeEEE
Confidence 22455555544346778888899999996432 0 11112221 1224666654322 2333344889999
Q ss_pred EEcCCCC------Cc--eeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 755 WSIGSGS------KG--ECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 755 wDl~s~~------~~--~~i~~~~~-~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
|-..... .. .....+.. ....|..++. ...+.++...+|.|+.|-...
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECCT
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCC
Confidence 9764210 00 11111111 2234555544 344667778899999997643
No 377
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=85.80 E-value=38 Score=35.62 Aligned_cols=189 Identities=13% Similarity=0.090 Sum_probs=106.8
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCce------e--eEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC---C--
Q 003177 612 PSLSRLATSSADRTVRVWDTENPDYS------L--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---G-- 678 (842)
Q Consensus 612 pdg~~Latgs~Dg~I~IWDl~t~~~~------i--~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t---~-- 678 (842)
++..++++.+.+|.|+--.+..-... + ..+... ..+..+........++ ..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll-~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLF-MISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEE-EEECCCeEEEEEHHHCCCCCc
Confidence 46678899999999998876532110 1 112222 3344444443334344 556688877666531 1
Q ss_pred ----ce---eeEEeecCCeeEEEEeC---CCCEEEEEEcCCeEEEEECCC-------CeEEEEEeCCCCCEEEEEEcCCC
Q 003177 679 ----SC---AGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTSG 741 (842)
Q Consensus 679 ----~~---i~~~~~~~~i~~v~~sp---~g~~l~~~s~dg~I~IwDl~t-------~~~~~~l~~h~~~V~sl~~spdg 741 (842)
.. ...+.....+..+...+ +..+++.++..|.++...+.. +.....+.. .+.+..+....++
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 11 11122234455554443 467899999999999887742 233333443 4556666554444
Q ss_pred CEEEEEe-CCeEEEEEcCCC----C--CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003177 742 EYLASVS-DELVRVWSIGSG----S--KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 804 (842)
Q Consensus 742 ~~Lasgs-Dg~I~IwDl~s~----~--~~~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~ 804 (842)
..|+..+ +|.+..+.+..- . .......+. .+..|..+....++..|++.+..|.++.+++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 4454444 998888887541 1 111222222 245566666656667799999999998888754
No 378
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=84.71 E-value=44 Score=35.39 Aligned_cols=190 Identities=12% Similarity=0.097 Sum_probs=103.5
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCC---CceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEEC---CC------Cc
Q 003177 612 PSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN------GS 679 (842)
Q Consensus 612 pdg~~Latgs~Dg~I~IWDl~t~---~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl---~t------~~ 679 (842)
|+..++++.+.+|.|+--.+..- ......+... ..+..+........++ ..+..|.++-+.. .. |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll-~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLL-LFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEE-EEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEE-EEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 56678899999999998765421 1111122322 3344444443444454 4455777665544 21 22
Q ss_pred eee---EEeecCCeeEEEEeCC---CCEEEEEEcCCeEEEEECC--------CCeEEEEEeCCCCCEEEEEEcCCCC-EE
Q 003177 680 CAG---VFKCQSGATQMRFQPR---LGRILAAAIENYISILDVE--------TQVCRLKLQGHKNQVHSVCWNTSGE-YL 744 (842)
Q Consensus 680 ~i~---~~~~~~~i~~v~~sp~---g~~l~~~s~dg~I~IwDl~--------t~~~~~~l~~h~~~V~sl~~spdg~-~L 744 (842)
.+. .+.....|..+...++ +.+++.++..|.++...+. .+.....+... +.+..+....... ++
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence 111 1222344555443332 5679999999999988764 22322334333 4555555544444 44
Q ss_pred EEEeCCeEEEEEcCCC----CCceeEEEeec-CCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC
Q 003177 745 ASVSDELVRVWSIGSG----SKGECIHELSC-TGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE 804 (842)
Q Consensus 745 asgsDg~I~IwDl~s~----~~~~~i~~~~~-~~~~I~sv~~spdg~-~L~sgs~dg~I~Iwdl~~ 804 (842)
+...+|.+..+....- ....-+..+.- .+..|.++...+++. .|++.+..|..+..++..
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 4444898888876431 11112222221 234566665544455 799999999888877644
No 379
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=83.48 E-value=0.49 Score=40.14 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHhcCCCCC
Q 003177 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (842)
Q Consensus 10 ~~L~~yiydyl~k~~~~~~A~~~~~e~~~~~~ 41 (842)
+-||.-|++||..+|+.+++.+|.+|.+++.+
T Consensus 11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~ 42 (88)
T 1uuj_A 11 DELNRAIADYLRSNGYEEAYSVFKKEAELDMN 42 (88)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence 35799999999999999999999999987754
No 380
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=80.36 E-value=1.3 Score=37.79 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHhcCCCCCC
Q 003177 11 MLDVYIYDYLLKRKLHASAKAFQTEGKVSTDP 42 (842)
Q Consensus 11 ~L~~yiydyl~k~~~~~~A~~~~~e~~~~~~~ 42 (842)
-+|-.||-||...|+..+|-+|-+|.++...+
T Consensus 7 evN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~ 38 (90)
T 2xtc_A 7 EVNFLVYRYLQESGFSHSAFTFGIESHISQSN 38 (90)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence 47899999999999999999999999887554
No 381
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=77.75 E-value=1.2e+02 Score=35.84 Aligned_cols=101 Identities=11% Similarity=0.096 Sum_probs=53.0
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeeEeecC-------ccceEEEEEcCCC-CcEEEEEeC-C-----C
Q 003177 604 WITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSK-EDLLCSCDN-N-----S 668 (842)
Q Consensus 604 ~I~~l~fspdg-~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h-------~~~V~sl~fspdg-~~llasgs~-D-----g 668 (842)
.|..|+++|.. ..|+++...+.|..++ ........+..+ ...|.+|+++|.. +.+++.++. . +
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~--D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD--PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE--TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC--CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 79999999863 4566666666655554 222223333222 2458999999854 344444331 0 1
Q ss_pred cEEEEEC-CCCceeeEEeec----------CCeeEEEEeCCC-CEEEEEE
Q 003177 669 EIRYWSI-NNGSCAGVFKCQ----------SGATQMRFQPRL-GRILAAA 706 (842)
Q Consensus 669 ~I~vwDl-~t~~~i~~~~~~----------~~i~~v~~sp~g-~~l~~~s 706 (842)
...||.- ..|+.-..+... ..+..++++|.. +.++++.
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 2334433 333322222211 113678898854 5566655
No 382
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.03 E-value=1.4e+02 Score=36.41 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=32.7
Q ss_pred eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 003177 690 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 726 (842)
Q Consensus 690 i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~ 726 (842)
+.+++..++..++++.+.|+++++|++.++.++.+..
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 5677788888999999999999999999999988754
No 383
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=76.68 E-value=89 Score=33.86 Aligned_cols=165 Identities=7% Similarity=0.065 Sum_probs=90.6
Q ss_pred cEEEEecCCC--eEEEEecc------CCCCeEEEEEc---CC----CCEEEEEe-CCCeEEEEEcCCCCceeeEee----
Q 003177 583 KAVLWCTESF--TVKSTLEE------HTQWITDVRFS---PS----LSRLATSS-ADRTVRVWDTENPDYSLRTFT---- 642 (842)
Q Consensus 583 ~I~vwd~~t~--~~~~~l~~------h~~~I~~l~fs---pd----g~~Latgs-~Dg~I~IWDl~t~~~~i~~~~---- 642 (842)
+|.+||+.+. +.++++.- ....+..+++. ++ +.+++.+. ..+.|.|+|+.+++. .+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEccCCCc
Confidence 6888999998 88877642 23457888887 22 33444443 467899999987653 22221
Q ss_pred ----------cC----ccceEEEEEcCC----CCcEEEEEeCCCcEEEEE---CCCC---ceeeEEeecC---CeeEEEE
Q 003177 643 ----------GH----STTVMSLDFHPS----KEDLLCSCDNNSEIRYWS---INNG---SCAGVFKCQS---GATQMRF 695 (842)
Q Consensus 643 ----------~h----~~~V~sl~fspd----g~~llasgs~Dg~I~vwD---l~t~---~~i~~~~~~~---~i~~v~~ 695 (842)
+. ...|..|+++|+ ++.+.+..-....++-.. ++.. ..+..+...+ ....+++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 10 136778888887 555555544433343333 1222 1222222222 2334566
Q ss_pred eC-CCCEEEEEEcCCeEEEEECCC-C----eEEEEEeC-CCCCEEEEEEcCCCCEEEEEe
Q 003177 696 QP-RLGRILAAAIENYISILDVET-Q----VCRLKLQG-HKNQVHSVCWNTSGEYLASVS 748 (842)
Q Consensus 696 sp-~g~~l~~~s~dg~I~IwDl~t-~----~~~~~l~~-h~~~V~sl~~spdg~~Lasgs 748 (842)
.+ +|..+++--..+.|..|+..+ . ........ .-..+..+.+..+|.+.+..+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 54 444444445568999999876 1 11111221 223567777777776555443
No 384
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=76.26 E-value=1.3e+02 Score=35.51 Aligned_cols=104 Identities=12% Similarity=0.088 Sum_probs=57.7
Q ss_pred CCeEEEEEcCCC-CEEEEEECCCcEEEEecCCCeEEEEeccC-------CCCeEEEEEcC-CCCEEEEEeCC-------C
Q 003177 561 SKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSP-SLSRLATSSAD-------R 624 (842)
Q Consensus 561 ~~V~sv~fSpdg-~~Lasgs~Dg~I~vwd~~t~~~~~~l~~h-------~~~I~~l~fsp-dg~~Latgs~D-------g 624 (842)
+.|.+|+|+|.. ..|+++...+.|+.++ +.++.-..+..+ ...|.+|++.| +...|+.+... +
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 379999999863 4555666667766665 334443334322 24599999998 33444444321 1
Q ss_pred eEEEEEcCCCCceeeEee-cCc--------cceEEEEEcCCCCcEEEEEe
Q 003177 625 TVRVWDTENPDYSLRTFT-GHS--------TTVMSLDFHPSKEDLLCSCD 665 (842)
Q Consensus 625 ~I~IWDl~t~~~~i~~~~-~h~--------~~V~sl~fspdg~~llasgs 665 (842)
...||....+........ ... ..+.+|+++|.....++.+.
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 245666554433222221 111 12467899987655555555
No 385
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.05 E-value=1.3e+02 Score=36.77 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=31.1
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 774 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 774 ~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
..+.+++..++..++++.+.|+++++|++.++.++
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence 35677788888899999999999999999999887
No 386
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=72.03 E-value=1.1e+02 Score=32.94 Aligned_cols=267 Identities=9% Similarity=0.058 Sum_probs=130.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEecCC-----------CeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCC-CeEE
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEE-HTQWITDVRFSPSLSRLATSSAD-RTVR 627 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t-----------~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~D-g~I~ 627 (842)
..|..|+.-. ...+.-..||.|+.|-... ......+.. ....|..|+...+ +.+....| +.|+
T Consensus 16 ~~v~~ia~G~--~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v~ 91 (406)
T 4d9s_A 16 RKVLIISAGA--SHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEVY 91 (406)
T ss_dssp CCEEEEEECS--SEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEEE
T ss_pred cceEEEecCC--CeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEEE
Confidence 3466666543 3444455688888884322 011122221 2235777766433 33333445 5999
Q ss_pred EEEcCCCC--------cee--eEee-cCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc---------ee--eEEe
Q 003177 628 VWDTENPD--------YSL--RTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------CA--GVFK 685 (842)
Q Consensus 628 IWDl~t~~--------~~i--~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~---------~i--~~~~ 685 (842)
.|-..... ... ..+. .....|..|+.. ....+.-..||.|+.|-....- .. ..+.
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G---~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG---DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC---hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99643211 000 1111 122357777654 2234455679999999765321 00 1111
Q ss_pred ecC--CeeEEEEeCCCCEEEEEEcCCeEEEEECCCC----------eE-EEEEeC-CCCCEEEEEEcCCCCEEEEEeCCe
Q 003177 686 CQS--GATQMRFQPRLGRILAAAIENYISILDVETQ----------VC-RLKLQG-HKNQVHSVCWNTSGEYLASVSDEL 751 (842)
Q Consensus 686 ~~~--~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~----------~~-~~~l~~-h~~~V~sl~~spdg~~LasgsDg~ 751 (842)
... .|..++ ....+.++...+|.|+.|-.... .. ...+.. ....|..|+... ...++...+|.
T Consensus 169 ~~~~~~i~~va--~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~-~ht~~l~~~G~ 245 (406)
T 4d9s_A 169 AFEGIRIKMVA--AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW-RHTISVSYSGA 245 (406)
T ss_dssp GGTTCCEEEEE--ECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECS-SEEEEEETTCC
T ss_pred ccCCCcEEEEe--cCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECC-CcEEEEcCCCC
Confidence 112 344444 34467777888999999964321 11 111111 123565555432 22333344889
Q ss_pred EEEEEcCCCCC------ce--eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC------------eEEEE
Q 003177 752 VRVWSIGSGSK------GE--CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN------------KTLTL 810 (842)
Q Consensus 752 I~IwDl~s~~~------~~--~i~~~~~-~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~------------~~~~~ 810 (842)
|+.|-...... .. ....+.. ....|..++. ...+.++...++.|+.|-.... .+..+
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 323 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 323 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEE
Confidence 99997543211 00 1111111 1233544443 3446677788889999965331 11111
Q ss_pred c-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 811 S-AHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 811 ~-~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
. .....|..|+.. ..+.+.-..||.|+.|
T Consensus 324 ~~~~~~~v~~va~G--~~hs~alt~~G~v~~w 353 (406)
T 4d9s_A 324 RFPDDQKVVQVSCG--WRHTLAVTERNNVFAW 353 (406)
T ss_dssp CCGGGCCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred eccCCCcEEEEEeC--CCeEEEEeCCCCEEEe
Confidence 1 123456666543 3344455678888887
No 387
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=66.81 E-value=1.8e+02 Score=33.19 Aligned_cols=228 Identities=10% Similarity=0.061 Sum_probs=117.9
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCc----------------------------EEEEecCCCeEEEEeccC--CCC---
Q 003177 559 STSKVESCHFSPDGK-LLATGGHDKK----------------------------AVLWCTESFTVKSTLEEH--TQW--- 604 (842)
Q Consensus 559 H~~~V~sv~fSpdg~-~Lasgs~Dg~----------------------------I~vwd~~t~~~~~~l~~h--~~~--- 604 (842)
|-..+....|.-||+ -|++.+.+|+ |.|+|-.+|+.+.++.-. ...
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 566688888888886 3666666665 788888888888765321 111
Q ss_pred ------------eEEEEEcC-CCCEEEEEe---CCCeEEEEEcCCCCce-eeEeecC-----------ccceEEEEEcCC
Q 003177 605 ------------ITDVRFSP-SLSRLATSS---ADRTVRVWDTENPDYS-LRTFTGH-----------STTVMSLDFHPS 656 (842)
Q Consensus 605 ------------I~~l~fsp-dg~~Latgs---~Dg~I~IWDl~t~~~~-i~~~~~h-----------~~~V~sl~fspd 656 (842)
..++++.. +...++.+- .-..|..||...++.. ...+... ...+...++.-|
T Consensus 257 WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgD 336 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGD 336 (591)
T ss_dssp GTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSS
T ss_pred cccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCC
Confidence 23444432 222333332 1224777887655421 1111110 023444455556
Q ss_pred CCcEEEEEe----CCCcEEEEECCCCceeeEEeecCCeeEEEEeCCC--CEEEEEEcCC----eEEEEECCCCeEEEEEe
Q 003177 657 KEDLLCSCD----NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL--GRILAAAIEN----YISILDVETQVCRLKLQ 726 (842)
Q Consensus 657 g~~llasgs----~Dg~I~vwDl~t~~~i~~~~~~~~i~~v~~sp~g--~~l~~~s~dg----~I~IwDl~t~~~~~~l~ 726 (842)
|..-|+.++ .||++ +|... +.|...+....|.|+. -.++.+.+++ ...++|..+++.+....
T Consensus 337 G~dEIv~Gs~~iD~dG~~-L~st~-------~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~ 408 (591)
T 2zux_A 337 GKDEIIFGSMAVDHDGKG-MYSTG-------LGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVY 408 (591)
T ss_dssp SSCEEEETTEEECTTSCE-EEECS-------CCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEEC
T ss_pred CCceEEEeeeEECCCCCE-eeeCC-------CCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcC
Confidence 655454443 34433 44442 1234445666677763 3566665541 45678999999998876
Q ss_pred CC--CCCEEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEE
Q 003177 727 GH--KNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWN 801 (842)
Q Consensus 727 ~h--~~~V~sl~~spdg--~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg~-~L~sgs~dg~I~Iwd 801 (842)
.. .+......|.|+. ..+.+ +. .+|+.... .+.... ....-..+-|..+.. .|+- .+.|.-|+
T Consensus 409 ~~~d~Gr~~~~Didp~~pG~E~w~--~~--~l~~~~G~----~i~~~~-p~~~N~~i~WdGDl~relld---~~~i~k~~ 476 (591)
T 2zux_A 409 AGKDVGRGMAADIDPRYPGQEVWA--NG--SLYSAKGV----KIGSGV-PSSTNFGIWWDGDLLREQLD---SNRIDKWD 476 (591)
T ss_dssp CSSCCCCEEEECCCTTSSSCEEEE--TT--EEECTTSC----BCSSCC-CSCCSEEECCSSSSSCEEEE---TTEEEEEE
T ss_pred CCCCCCceeEEecCCCCCceEEEe--cC--ceECCCCC----EecCCC-CCCcceeEEECCCCcHhhhC---CceEEecc
Confidence 43 3444444555552 22332 22 35554432 111110 111123456666653 3332 23788899
Q ss_pred CCCCe
Q 003177 802 MTENK 806 (842)
Q Consensus 802 l~~~~ 806 (842)
...++
T Consensus 477 ~~~~~ 481 (591)
T 2zux_A 477 YQNGV 481 (591)
T ss_dssp TTTTE
T ss_pred cCCCc
Confidence 87775
No 388
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=63.38 E-value=1.7e+02 Score=31.59 Aligned_cols=232 Identities=9% Similarity=0.093 Sum_probs=115.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEecCCC---------e--EEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCTESF---------T--VKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRV 628 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~---------~--~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~I 628 (842)
..|..|+...+. .+|....++.|+.|-.... . ....+.. ....|..|+.. ..+.+.-..||.|+.
T Consensus 68 ~~i~~va~G~~h-t~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~ 144 (406)
T 4d9s_A 68 HQIVSVTCGADH-TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQS 144 (406)
T ss_dssp SCEEEEEECSSE-EEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CCEEEEEeCcce-EEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEEE
Confidence 357777765432 2333333358999953211 1 1112222 22357777654 345566678999999
Q ss_pred EEcCCCCc----------eeeEeec-CccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc----------ee-eEEee
Q 003177 629 WDTENPDY----------SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----------CA-GVFKC 686 (842)
Q Consensus 629 WDl~t~~~----------~i~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~----------~i-~~~~~ 686 (842)
|-...... ....+.. ....|..|+... ...+.-..+|.|+.|-..... .. ..+..
T Consensus 145 wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~ 221 (406)
T 4d9s_A 145 WGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGA---EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTS 221 (406)
T ss_dssp EECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCC
T ss_pred eCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCC---CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecc
Confidence 97543211 0111111 122566666543 244455679999999754311 00 11111
Q ss_pred --cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-----------eEEEEEeC-CCCCEEEEEEcCCCCEEEEEeCCeE
Q 003177 687 --QSGATQMRFQPRLGRILAAAIENYISILDVETQ-----------VCRLKLQG-HKNQVHSVCWNTSGEYLASVSDELV 752 (842)
Q Consensus 687 --~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~-----------~~~~~l~~-h~~~V~sl~~spdg~~LasgsDg~I 752 (842)
...+..++. ...+.++...+|.|+.|-.... .....+.. ....|..|+-- ....++...||.|
T Consensus 222 ~~~~~i~~va~--G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G-~~hs~alt~~G~v 298 (406)
T 4d9s_A 222 TGGEKMSMVAC--GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG-WRHTMALTSDGKL 298 (406)
T ss_dssp STTCCEEEEEE--CSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC-SSEEEEEETTSCE
T ss_pred cCCceEEEEEE--CCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec-CCEEEEEcCCCeE
Confidence 123444433 3456777788999999964321 11111221 22346655542 2223334448899
Q ss_pred EEEEcCCCC------Cc---eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 753 RVWSIGSGS------KG---ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 753 ~IwDl~s~~------~~---~~i~~~~~~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
+.|-..... .. .+..........|..++. ...+.++...++.|+.|=..
T Consensus 299 ~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~--G~~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 299 YGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSC--GWRHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp EEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEE--CSSEEEEEETTSCEEEEECC
T ss_pred EEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEe--CCCeEEEEeCCCCEEEecCC
Confidence 999754321 00 111111112234544443 34466777788899999754
No 389
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=61.97 E-value=1.8e+02 Score=31.39 Aligned_cols=227 Identities=10% Similarity=0.069 Sum_probs=115.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-----------eeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEE
Q 003177 603 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 671 (842)
Q Consensus 603 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t~~~-----------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 671 (842)
..|..|+-. ..+.+.-..||.|+.|-...... ..-........|..|+... ...+.-..||.|+
T Consensus 59 ~~i~~va~G--~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G~---~hs~alt~~G~v~ 133 (413)
T 1a12_A 59 EDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGD---SHTAALTDDGRVF 133 (413)
T ss_dssp SCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECS---SEEEEEETTSCEE
T ss_pred CCeEEEEeC--CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecCC---CeEEEEcCCCcEE
Confidence 557776654 33555566899999997543110 0000111123566666542 2444556799999
Q ss_pred EEEC--CC-Cce-----------eeEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC------------------
Q 003177 672 YWSI--NN-GSC-----------AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ------------------ 719 (842)
Q Consensus 672 vwDl--~t-~~~-----------i~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~------------------ 719 (842)
.|-. .. +.+ ...+.....|..++. ...+.++...+|.|+.|-....
T Consensus 134 ~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~ 211 (413)
T 1a12_A 134 LWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS--GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQG 211 (413)
T ss_dssp EEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGG
T ss_pred EeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEe--cCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccc
Confidence 9975 21 110 111112234544444 3456777788999999965421
Q ss_pred -----eEE-EEEeC----CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC------ce--eEEEeecC-C--CceEE
Q 003177 720 -----VCR-LKLQG----HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK------GE--CIHELSCT-G--NKFHS 778 (842)
Q Consensus 720 -----~~~-~~l~~----h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~------~~--~i~~~~~~-~--~~I~s 778 (842)
.+. ..+.. ....|..|+...+ ..++...+|.|+.|-...... .. ....+... . ..|..
T Consensus 212 ~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~-hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ 290 (413)
T 1a12_A 212 LERLLVPKCVMLKSRGSRGHVRFQDAFCGAY-FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVG 290 (413)
T ss_dssp HHHHHSCEECCCBCSSCCSBCCEEEEEEETT-EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEE
T ss_pred ccccccCceEeeccccccCCccEEEEEeCCC-EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEE
Confidence 010 01100 1235666655332 233334588999997653210 01 11111111 1 23554
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCC----------Ce-EE-EEccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 003177 779 CVFHPTFPSLLVIGCYETLELWNMTE----------NK-TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 841 (842)
Q Consensus 779 v~~spdg~~L~sgs~dg~I~Iwdl~~----------~~-~~-~~~~h~~~V~sla~spdg~~Lasgs~DG~V~IW 841 (842)
++. ...+.++...+|.|+.|-... .. .. ........|..|+.. ..+.+.-..||.|+.|
T Consensus 291 ia~--G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G--~~hs~alt~~G~v~~w 361 (413)
T 1a12_A 291 FSG--GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACG--ASVGYAVTKDGRVFAW 361 (413)
T ss_dssp EEE--CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred Eec--ccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEEC--cceEEEEeCCCCEEEe
Confidence 444 334667777889999996532 11 11 122222367666654 3344455678888887
No 390
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=55.16 E-value=88 Score=36.04 Aligned_cols=59 Identities=14% Similarity=0.062 Sum_probs=43.0
Q ss_pred eeEEEEeCCCCEEEEEEcC------------CeEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEe
Q 003177 690 ATQMRFQPRLGRILAAAIE------------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS 748 (842)
Q Consensus 690 i~~v~~sp~g~~l~~~s~d------------g~I~IwDl~t~~~~~~l~~h-~~~V~sl~~spdg~~Lasgs 748 (842)
.-.|+|++.|+.+++-..+ +.+.+++..+++....+.++ ...++.++|+||++.|++.-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 4678999998866554432 34677777888776666654 46899999999999887653
No 391
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=51.37 E-value=1.7e+02 Score=33.56 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=43.5
Q ss_pred eeEEEEeCCCCEEEEEEc------------CCeEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEe
Q 003177 690 ATQMRFQPRLGRILAAAI------------ENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS 748 (842)
Q Consensus 690 i~~v~~sp~g~~l~~~s~------------dg~I~IwDl~t~~~~~~l~~h-~~~V~sl~~spdg~~Lasgs 748 (842)
...|.|.++|..+++... .+.|..++..+++....+... ...++.++|+||++.|++.-
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 457899999887775432 126788888888776666543 45789999999999888764
No 392
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=48.11 E-value=2e+02 Score=28.98 Aligned_cols=142 Identities=8% Similarity=-0.054 Sum_probs=76.6
Q ss_pred EEEEEECCCcEEEEecCCCeE-EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---C---Ccee---eEeec
Q 003177 574 LLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---P---DYSL---RTFTG 643 (842)
Q Consensus 574 ~Lasgs~Dg~I~vwd~~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t---~---~~~i---~~~~~ 643 (842)
.+++.+.+|.|+--....... ...+...+ .+..+........|+..+..|.++-+.+.. . ..++ ..+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D-~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGD-SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTC-CEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCC-EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 455566777766554332110 01233333 344443333445666677888776665432 1 1111 0111
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-------CceeeEEeecCCeeEEEEe-CCCCEEEEEEcCCeEEEEE
Q 003177 644 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQ-PRLGRILAAAIENYISILD 715 (842)
Q Consensus 644 h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-------~~~i~~~~~~~~i~~v~~s-p~g~~l~~~s~dg~I~IwD 715 (842)
....|.++....++. .++.++..|.++...+.. +.....+...+.+..+... ..+..++..+.+|.+..|+
T Consensus 82 ~~e~Iv~~~~~~~~~-~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQ-KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTC-EEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCC-EEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 234566664433434 455778899999988743 2333333334455555555 3456888999999988888
Q ss_pred CCC
Q 003177 716 VET 718 (842)
Q Consensus 716 l~t 718 (842)
+..
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 753
No 393
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=47.73 E-value=1.2e+02 Score=26.52 Aligned_cols=59 Identities=10% Similarity=-0.044 Sum_probs=29.6
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003177 700 GRILAAAIENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRVWSIGS 759 (842)
Q Consensus 700 ~~l~~~s~dg~I~IwDl~t~~~~~~l~~h-~~~V~sl~~spdg~~LasgsDg~I~IwDl~s 759 (842)
.+.+.-..||.+.+|+...+..+..-... ......+.+..+|++++...++.+ +|...+
T Consensus 25 ~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 25 DYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp TEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECTTSCE-EEECSC
T ss_pred CEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECCCCCE-EEECCC
Confidence 34444445555555554323333332211 112245677778887776555544 677544
No 394
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=46.64 E-value=1.1e+02 Score=26.23 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=15.7
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003177 734 SVCWNTSGEYLASVSDELVRVWSIGS 759 (842)
Q Consensus 734 sl~~spdg~~LasgsDg~I~IwDl~s 759 (842)
.+.+..||.+++...++. .||...+
T Consensus 54 ~L~l~~dGnLvL~d~~~~-~vWss~t 78 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDSSGR-SLWASHS 78 (105)
T ss_dssp EEEECTTSCEEEECTTCC-EEEECCC
T ss_pred EEEEeCCccEEEECCCcE-EEEEecC
Confidence 467778888776654544 3676543
No 395
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=40.17 E-value=5.2e+02 Score=30.37 Aligned_cols=149 Identities=11% Similarity=0.108 Sum_probs=75.6
Q ss_pred CCCCeEEEEEcCCC-CEEEEEECCCcEEEEecCCCeEEEEecc------------CCCCeEEEEEcC-CCCEEEEEeCC-
Q 003177 559 STSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEE------------HTQWITDVRFSP-SLSRLATSSAD- 623 (842)
Q Consensus 559 H~~~V~sv~fSpdg-~~Lasgs~Dg~I~vwd~~t~~~~~~l~~------------h~~~I~~l~fsp-dg~~Latgs~D- 623 (842)
-.+.|.+|+++|.+ ..++++...|.|...+ +.++.-..+.. ....|.+|++.| +...++.+..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45679999999965 5666666667665554 33444333322 224589999988 33444443321
Q ss_pred ----CeEEEEEcCCCCceeeEeec-C------cc--ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEe-e---
Q 003177 624 ----RTVRVWDTENPDYSLRTFTG-H------ST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-C--- 686 (842)
Q Consensus 624 ----g~I~IWDl~t~~~~i~~~~~-h------~~--~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~--- 686 (842)
....||.-..+......... . .. ....|+++|.....++.+..++.|. .....|+.-..+. .
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~~~~~~ 176 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWSRMNQLPDS 176 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCEECTTSCCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCccccccCccc
Confidence 12445544433322222211 0 11 1146888886544554555444333 2222232211111 0
Q ss_pred ---cCCeeEEEEeCCC-CEEEEEEcCC
Q 003177 687 ---QSGATQMRFQPRL-GRILAAAIEN 709 (842)
Q Consensus 687 ---~~~i~~v~~sp~g-~~l~~~s~dg 709 (842)
...+..+.++|.. +.++++..++
T Consensus 177 ~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 177 STYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCCccceEEEEECCCCCCEEEEEEeCC
Confidence 1246778888753 4566666665
No 396
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=39.71 E-value=4.9e+02 Score=32.31 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=31.7
Q ss_pred eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 003177 690 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 726 (842)
Q Consensus 690 i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~~~~~~l~ 726 (842)
+.+++..++..++++.+.|++++||++.++.++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4556677788999999999999999999999988754
No 397
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=37.79 E-value=79 Score=36.45 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=41.6
Q ss_pred eEEEEEcCCCCEEEEEECC------------CcEEEEecCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEE
Q 003177 563 VESCHFSPDGKLLATGGHD------------KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATS 620 (842)
Q Consensus 563 V~sv~fSpdg~~Lasgs~D------------g~I~vwd~~t~~~~~~l~~h-~~~I~~l~fspdg~~Latg 620 (842)
.--|+|+++|.++++-..+ ..+.+.+..+++....+.++ ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999876654322 23566677777777666554 4679999999999888765
No 398
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=36.63 E-value=4.6e+02 Score=28.69 Aligned_cols=191 Identities=9% Similarity=-0.009 Sum_probs=94.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC----------CC--c--eeeEeec-CccceEEEEEcCCCCcEEEEEeCC
Q 003177 603 QWITDVRFSPSLSRLATSSADRTVRVWDTEN----------PD--Y--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN 667 (842)
Q Consensus 603 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~t----------~~--~--~i~~~~~-h~~~V~sl~fspdg~~llasgs~D 667 (842)
..|..|+.. ....+.-..||.|+.|-... .. . ....+.. ....|..|+... ...+.-..+
T Consensus 148 ~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~---~hs~alt~~ 222 (473)
T 3of7_A 148 HKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK---DHILFLDEE 222 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECS---SEEEEEETT
T ss_pred CcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecC---CeEEEEeCC
Confidence 456666654 33555556789999997510 00 0 0011111 112466776542 244455679
Q ss_pred CcEEEEECCCCcee--------------eEEeecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC------------eE
Q 003177 668 SEIRYWSINNGSCA--------------GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ------------VC 721 (842)
Q Consensus 668 g~I~vwDl~t~~~i--------------~~~~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~------------~~ 721 (842)
|.|+.|-....-.+ ........|..|+. ...+.++...+|.|+.|-.... ..
T Consensus 223 G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~--G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIAS--GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp SCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEE--CSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred CeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEec--CCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 99999976532110 00000123444443 3456777778899999854320 11
Q ss_pred E---EEEeC-CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCc-------------------eeEEE-eecCC-Cce
Q 003177 722 R---LKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG-------------------ECIHE-LSCTG-NKF 776 (842)
Q Consensus 722 ~---~~l~~-h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~-------------------~~i~~-~~~~~-~~I 776 (842)
+ ..+.. ....|..|+.... ..++...+|.|+.|-....... ..+.. ..... ..|
T Consensus 301 ~~~P~~v~~~~~~~i~~ia~G~~-hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v 379 (473)
T 3of7_A 301 VTKPKRLALPDNVVIRSIAAGEH-HSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKF 379 (473)
T ss_dssp EEEEEECCCCTTCCEEEEEECSS-EEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCE
T ss_pred eeccccccccCCccEEEEEeCCC-eEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCce
Confidence 1 11111 1235666654322 2233344888888875432100 00101 11111 144
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003177 777 HSCVFHPTFPSLLVIGCYETLELWNMT 803 (842)
Q Consensus 777 ~sv~~spdg~~L~sgs~dg~I~Iwdl~ 803 (842)
..++. ...+.++...+|.|+.|=..
T Consensus 380 ~~Ia~--G~~hs~al~~~G~vy~wG~n 404 (473)
T 3of7_A 380 KSVAA--GSHHSVAVAQNGIAYSWGFG 404 (473)
T ss_dssp EEEEE--CSSEEEEEETTSCEEEEECC
T ss_pred EEEEe--CCCeEEEEeCCCcEEEeeCC
Confidence 44443 34466777889999999654
No 399
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=35.15 E-value=1.2e+02 Score=34.89 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=43.0
Q ss_pred CeEEEEEcCCCCEEEEEEC------------CCcEEEEecCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEe
Q 003177 562 KVESCHFSPDGKLLATGGH------------DKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSS 621 (842)
Q Consensus 562 ~V~sv~fSpdg~~Lasgs~------------Dg~I~vwd~~t~~~~~~l~~h-~~~I~~l~fspdg~~Latgs 621 (842)
....|+|.++|.+.++... .+.|..++..+++....+... ...++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4667999999987764321 125777777778776666543 35689999999999887763
No 400
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=33.40 E-value=6.5e+02 Score=29.51 Aligned_cols=147 Identities=8% Similarity=0.134 Sum_probs=70.1
Q ss_pred CCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeeEeec------------CccceEEEEEcCCC-CcEEEEEeC
Q 003177 601 HTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG------------HSTTVMSLDFHPSK-EDLLCSCDN 666 (842)
Q Consensus 601 h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~t~~~~i~~~~~------------h~~~V~sl~fspdg-~~llasgs~ 666 (842)
-.+.|.+|+++|.+ ..++++...|.|... ..+......+.. ....|.+|+++|.. +.+++.++.
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S--~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~ 96 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRW--NAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGD 96 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEE--ETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECS
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEE--CCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecc
Confidence 45689999999965 566666666655433 333322222221 12458999999854 334443321
Q ss_pred ----CCcEEEE-ECCCCceeeEEeec--------CC-e-eEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEeC---
Q 003177 667 ----NSEIRYW-SINNGSCAGVFKCQ--------SG-A-TQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG--- 727 (842)
Q Consensus 667 ----Dg~I~vw-Dl~t~~~i~~~~~~--------~~-i-~~v~~sp~g-~~l~~~s~dg~I~IwDl~t~~~~~~l~~--- 727 (842)
.....|| ....|+.-..+... .. + ..++++|.. +.+++++..+.|.. ..+.++.-..+..
T Consensus 97 ~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW~~~~~~~~ 175 (763)
T 3a0f_A 97 YVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTWSRMNQLPD 175 (763)
T ss_dssp CTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSCEECTTSCC
T ss_pred cccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCccccccCcc
Confidence 0112333 33334322222211 11 1 368888753 45555554443332 2222221111111
Q ss_pred ---CCCCEEEEEEcCCC--CEEEEEeCC
Q 003177 728 ---HKNQVHSVCWNTSG--EYLASVSDE 750 (842)
Q Consensus 728 ---h~~~V~sl~~spdg--~~LasgsDg 750 (842)
....+..|+++|.. .+++...++
T Consensus 176 ~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 176 SSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred cCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 11347788898753 344433343
No 401
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=32.35 E-value=5.3e+02 Score=28.15 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=73.1
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCcEEEEECC---CCce---------e---eEEeecC--CeeEEEEeCCCCEEEEEEcC
Q 003177 646 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSC---------A---GVFKCQS--GATQMRFQPRLGRILAAAIE 708 (842)
Q Consensus 646 ~~V~sl~fspdg~~llasgs~Dg~I~vwDl~---t~~~---------i---~~~~~~~--~i~~v~~sp~g~~l~~~s~d 708 (842)
..|..|+... ...+.-..||.|+.|-.. .+.. . ..+.... .|..|+. ...+.++...+
T Consensus 148 ~~i~~va~G~---~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~--G~~hs~alt~~ 222 (473)
T 3of7_A 148 HKVVQLAATD---NMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAP--GKDHILFLDEE 222 (473)
T ss_dssp CCEEEEEECS---SEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEE--CSSEEEEEETT
T ss_pred CcEEEEEccC---CEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEe--cCCeEEEEeCC
Confidence 4566666653 234455678999999751 1110 0 0111111 2444444 44677788889
Q ss_pred CeEEEEECCCC-e--------------EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC------c---e
Q 003177 709 NYISILDVETQ-V--------------CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK------G---E 764 (842)
Q Consensus 709 g~I~IwDl~t~-~--------------~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~------~---~ 764 (842)
|.|+.|-.... . ....+ ....|..|+.- ....++...+|.|+.|-...... . .
T Consensus 223 G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~--~~~~v~~Ia~G-~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~ 299 (473)
T 3of7_A 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF--GLRHVKYIASG-ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGA 299 (473)
T ss_dssp SCEEEEECCTTSTTSSCCCGGGTTTTCSCEEC--SCCSEEEEEEC-SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTC
T ss_pred CeEEEEeCCCCCCCCCCccccccccccCceec--CCcceEEEecC-CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCc
Confidence 99999965421 0 00011 11356666543 22233334488899997543210 0 0
Q ss_pred eE---EEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003177 765 CI---HELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNM 802 (842)
Q Consensus 765 ~i---~~~~~-~~~~I~sv~~spdg~~L~sgs~dg~I~Iwdl 802 (842)
.+ ..+.. ....|..++.. ..+.++...+|.|+.|-.
T Consensus 300 ~~~~P~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~v~~wG~ 339 (473)
T 3of7_A 300 LVTKPKRLALPDNVVIRSIAAG--EHHSLILSQDGDLYSCGR 339 (473)
T ss_dssp EEEEEEECCCCTTCCEEEEEEC--SSEEEEEETTSCEEEEEE
T ss_pred eeeccccccccCCccEEEEEeC--CCeEEEEeCCCeEEEEEC
Confidence 11 11111 12345544443 335566677888888864
No 402
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=29.40 E-value=4.5e+02 Score=26.37 Aligned_cols=142 Identities=10% Similarity=0.027 Sum_probs=74.6
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECC---C----Ccee---eEE
Q 003177 615 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---N----GSCA---GVF 684 (842)
Q Consensus 615 ~~Latgs~Dg~I~IWDl~t~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~---t----~~~i---~~~ 684 (842)
..+++.+.+|.|+--...........+... ..+..+........++ ..+..|.++-+.+. . |..+ ..+
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll-~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L 80 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVV-FVDSTGRSYAIDPITLPSARGQGEPLTGKLTL 80 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEE-EEETTSEEEEECGGGSCCSSSCCEEGGGTCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEE-EEeCCCeEEEEEHHHCCCcCCCCeEeeeeecC
Confidence 346677788888766544321111122333 3333333333334444 44557776655432 1 2211 112
Q ss_pred eecCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC-------CeEEEEEeCCCCCEEEEEEc-CCCCEEEEEe-CCeEEEE
Q 003177 685 KCQSGATQMRFQPRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWN-TSGEYLASVS-DELVRVW 755 (842)
Q Consensus 685 ~~~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t-------~~~~~~l~~h~~~V~sl~~s-pdg~~Lasgs-Dg~I~Iw 755 (842)
.....|..+....++.+++.++..|.++...+.. +.....+.. .+.+..+... .++..|+..+ +|.+..|
T Consensus 81 ~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 81 PPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp CTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred CCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 2244566664434567788999999999887642 344444443 3445555454 2344455544 8988888
Q ss_pred EcCC
Q 003177 756 SIGS 759 (842)
Q Consensus 756 Dl~s 759 (842)
.+..
T Consensus 160 ~~~e 163 (256)
T 1zvt_A 160 PVSD 163 (256)
T ss_dssp EGGG
T ss_pred EHHH
Confidence 8753
No 403
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=28.78 E-value=1.4e+02 Score=37.34 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=29.3
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003177 775 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 808 (842)
Q Consensus 775 ~I~sv~~spdg~~L~sgs~dg~I~Iwdl~~~~~~ 808 (842)
.+.+++..++..++++.+.|++++||++.++.++
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 4455667788899999999999999999999877
No 404
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=28.70 E-value=6.9e+02 Score=28.36 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=81.9
Q ss_pred CCEEEEEECCCcEEEEecCCCeEEEEec-------------------cCC----C-C-eEEEEEcCCCCEEEEEeC---C
Q 003177 572 GKLLATGGHDKKAVLWCTESFTVKSTLE-------------------EHT----Q-W-ITDVRFSPSLSRLATSSA---D 623 (842)
Q Consensus 572 g~~Lasgs~Dg~I~vwd~~t~~~~~~l~-------------------~h~----~-~-I~~l~fspdg~~Latgs~---D 623 (842)
..+|++|+.||.++.+|.. ++++..+- .|. + + +..+.+...-+.++.++. .
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 3578888999999998876 54433321 021 1 1 223333221233444442 2
Q ss_pred CeEEEEEcCCCCc--eeeEee-------cCccceEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCceeeEEeecC
Q 003177 624 RTVRVWDTENPDY--SLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQS 688 (842)
Q Consensus 624 g~I~IWDl~t~~~--~i~~~~-------~h~~~V~sl~fspdg~~llasgs~------Dg~I~vwDl~t~~~i~~~~~~~ 688 (842)
..++..|+.++.. .+..+. ++.-.--.|....+++.+++.++. ...|+|.|+.++..+..+....
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~ 243 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTG 243 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECC
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCC
Confidence 3566667665322 122222 111111123333456666666542 4589999999999998887532
Q ss_pred ------CeeEEEEe-CCC----CEEEEEEcCCeEEEEECCCC
Q 003177 689 ------GATQMRFQ-PRL----GRILAAAIENYISILDVETQ 719 (842)
Q Consensus 689 ------~i~~v~~s-p~g----~~l~~~s~dg~I~IwDl~t~ 719 (842)
.+..+... .++ ..++++...|.|.-+|+...
T Consensus 244 ~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~ 285 (570)
T 3hx6_A 244 RTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAG 285 (570)
T ss_dssp STTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCS
T ss_pred CCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCC
Confidence 23344332 232 46889999999999999764
No 405
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=27.96 E-value=5.7e+02 Score=27.18 Aligned_cols=190 Identities=9% Similarity=-0.031 Sum_probs=97.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEec--CC-CeE---------EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCT--ES-FTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 628 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~--~t-~~~---------~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 628 (842)
..|..|+...+ ..+.-..||.|+.|-. .. +.+ ..........|..|+... .+.+.-..||.|+.
T Consensus 127 ~~i~~va~G~~--hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~--~hs~alt~~G~v~~ 202 (423)
T 3mvd_K 127 GKALCISAGDS--HSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGA--DHLVILTTAGKVFT 202 (423)
T ss_dssp SCEEEEEECSS--EEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECS--SEEEEEETTSCEEE
T ss_pred CCEEEEEcCcC--eEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCC--CeEEEEecCCeEEE
Confidence 35777766533 4444567899999974 21 211 111111234566666543 35556668999999
Q ss_pred EEcCCCC----------------------ceeeEeecCccceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc-------
Q 003177 629 WDTENPD----------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------- 679 (842)
Q Consensus 629 WDl~t~~----------------------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~------- 679 (842)
|-..... .+..........|..|+... .+.++.-..+|.|+.|-.....
T Consensus 203 wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~--~~~~~~~~~~g~v~~wG~n~~gqlg~~~~ 280 (423)
T 3mvd_K 203 VGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN--YCTFMRESQTQVIWATGLNNFKQLAHETK 280 (423)
T ss_dssp EECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEET--TEEEEEETTTCCEEEEEECTTCTTSSCCT
T ss_pred eeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECC--cEEEEEECCCCeEEEEeCCCCCcCCCCCC
Confidence 9643211 11111111223455555442 2233333578999999754311
Q ss_pred ----eeeEEee-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC------------eEEEEEeCCCCCEEEEEEcCCCC
Q 003177 680 ----CAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ------------VCRLKLQGHKNQVHSVCWNTSGE 742 (842)
Q Consensus 680 ----~i~~~~~-~~~i~~v~~sp~g~~l~~~s~dg~I~IwDl~t~------------~~~~~l~~h~~~V~sl~~spdg~ 742 (842)
....... ...|..++. ...+.++...+|.|+.|-.... .....+......|..|+... ..
T Consensus 281 ~~~~~~~p~~~~~~~v~~ia~--G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~-~h 357 (423)
T 3mvd_K 281 GKEFALTPIKTELKDIRHIAG--GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE-VC 357 (423)
T ss_dssp TCSEEEEEEEECCCSEEEEEE--CSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET-TE
T ss_pred CCceeeeeEEcCCCCeEEEEc--ccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC-Ce
Confidence 1111111 234444443 3456777788999999964321 11222222233576666542 22
Q ss_pred EEEEEeCCeEEEEEcCC
Q 003177 743 YLASVSDELVRVWSIGS 759 (842)
Q Consensus 743 ~LasgsDg~I~IwDl~s 759 (842)
.++...||.|+.|-...
T Consensus 358 s~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 358 SYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp EEEEETTSCEEEEECCT
T ss_pred EEEEcCCCCEEEECCCC
Confidence 34444588999997654
No 406
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=27.42 E-value=2.9e+02 Score=23.58 Aligned_cols=25 Identities=8% Similarity=0.304 Sum_probs=15.1
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003177 733 HSVCWNTSGEYLASVSDELVRVWSIG 758 (842)
Q Consensus 733 ~sl~~spdg~~LasgsDg~I~IwDl~ 758 (842)
..+.+..+|++++...++. .+|...
T Consensus 52 ~~l~l~~dGNLvl~~~~~~-~~W~S~ 76 (109)
T 3dzw_A 52 CHLSMQSDGNLVVYSPRNN-PIWASN 76 (109)
T ss_dssp CEEEECTTSCEEEECTTSC-EEEECC
T ss_pred EEEEEeCCCCEEEECCCCC-EEEECC
Confidence 3466777787776544443 377644
No 407
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=26.15 E-value=88 Score=36.87 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEecCCCeEEEEecc
Q 003177 561 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 600 (842)
Q Consensus 561 ~~V~sv~fSpdg~~Lasgs~Dg~I~vwd~~t~~~~~~l~~ 600 (842)
..|.|+.+. ..+|++-+.|+++|+||+.++.++.+..-
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 346666663 67999999999999999999998877643
No 408
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=26.11 E-value=8.5e+02 Score=28.55 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCceeeEEee
Q 003177 647 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 686 (842)
Q Consensus 647 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~ 686 (842)
.|.++.+. ..++++-+.|+++|+||++++.++.....
T Consensus 223 ~Is~~~~~---~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLFH---ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEET---TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEeccC---CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45655554 34677888999999999999999988776
No 409
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=24.57 E-value=3.5e+02 Score=23.57 Aligned_cols=24 Identities=13% Similarity=0.360 Sum_probs=14.5
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEcC
Q 003177 734 SVCWNTSGEYLASVSDELVRVWSIG 758 (842)
Q Consensus 734 sl~~spdg~~LasgsDg~I~IwDl~ 758 (842)
.+.+..+|++++...++. .+|...
T Consensus 64 ~l~l~~dGNLVl~d~~~~-~lW~S~ 87 (119)
T 1b2p_A 64 RAVLQPDGVLVVITNENV-TVWQSP 87 (119)
T ss_dssp EEEECTTSCEEEECTTCC-EEEECS
T ss_pred EEEEccCCEEEEEeCCCc-EEEcCC
Confidence 466677777766644443 467644
No 410
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=23.54 E-value=8.5e+02 Score=27.68 Aligned_cols=153 Identities=12% Similarity=0.150 Sum_probs=78.7
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCc----------------------------EEEEECCCCceeeEEeec---CCe--
Q 003177 644 HSTTVMSLDFHPSKEDLLCSCDNNSE----------------------------IRYWSINNGSCAGVFKCQ---SGA-- 690 (842)
Q Consensus 644 h~~~V~sl~fspdg~~llasgs~Dg~----------------------------I~vwDl~t~~~i~~~~~~---~~i-- 690 (842)
|-..+...+|.-||..=|+....+|+ |.++|-.+|+.+.++... ..+
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 44556667777777655555555554 788998888888776642 111
Q ss_pred -------------eEEEEe-CCCCEEEEEE---cCCeEEEEECCCCeEE--EEEeCCC-----------CCEEEEEEcCC
Q 003177 691 -------------TQMRFQ-PRLGRILAAA---IENYISILDVETQVCR--LKLQGHK-----------NQVHSVCWNTS 740 (842)
Q Consensus 691 -------------~~v~~s-p~g~~l~~~s---~dg~I~IwDl~t~~~~--~~l~~h~-----------~~V~sl~~spd 740 (842)
.++++. -+...++++- ....|..||.+.++.. ..+.... ..+....+.-|
T Consensus 257 WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgD 336 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGD 336 (591)
T ss_dssp GTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSS
T ss_pred cccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCC
Confidence 222221 1222333332 1235888998877653 3333211 12333334444
Q ss_pred CC-EEEEEe-----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC--CEEEEEEcCC----eEEEEECCCCeEE
Q 003177 741 GE-YLASVS-----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF--PSLLVIGCYE----TLELWNMTENKTL 808 (842)
Q Consensus 741 g~-~Lasgs-----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~~spdg--~~L~sgs~dg----~I~Iwdl~~~~~~ 808 (842)
|+ -|+.++ ||+ .+|.... +|...+....|.|+. -.++.+..++ -..+.|..+++++
T Consensus 337 G~dEIv~Gs~~iD~dG~-~L~st~~-----------gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vl 404 (591)
T 2zux_A 337 GKDEIIFGSMAVDHDGK-GMYSTGL-----------GHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKIL 404 (591)
T ss_dssp SSCEEEETTEEECTTSC-EEEECSC-----------CCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEE
T ss_pred CCceEEEeeeEECCCCC-EeeeCCC-----------CCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEE
Confidence 43 222111 333 2554421 456666666677763 3455554431 3455777777776
No 411
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=21.18 E-value=1.2e+02 Score=26.44 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=13.9
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEc
Q 003177 734 SVCWNTSGEYLASVSDELVRVWSI 757 (842)
Q Consensus 734 sl~~spdg~~LasgsDg~I~IwDl 757 (842)
.+.+..+|++++...++.+.+|..
T Consensus 53 ~l~l~~dGNLVl~~~~~~~~vW~S 76 (111)
T 3mez_A 53 TLRLNNRGQLEIHSANSNTPVWVY 76 (111)
T ss_dssp EEEECTTSCEEEECSSCSSCSEEE
T ss_pred EEEEcCCCcEEEEeCCCCEEEEEe
Confidence 456667777766544444446643
No 412
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=21.17 E-value=87 Score=26.03 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHhcCCCCC
Q 003177 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (842)
Q Consensus 10 ~~L~~yiydyl~k~~~~~~A~~~~~e~~~~~~ 41 (842)
.+++.-|-|||-=.++.=|..-|..|++.+..
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~~~ 50 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTLQG 50 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCCCC
Confidence 47899999999999999999999999998753
No 413
>4a9z_A Tumor protein 63; transcription; HET: PE4; 2.29A {Homo sapiens}
Probab=20.44 E-value=74 Score=24.75 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=16.1
Q ss_pred CCCchhHHhHhHH--------HHHhHHHHHhhhhcCC
Q 003177 358 RGDNDLLIKLTTT--------QIQQQQQQLQHYSHHP 386 (842)
Q Consensus 358 ~~~~~~~~~~~~~--------q~q~~~~qqqq~qq~~ 386 (842)
|..-+||+|++.. |.+...-++||+|||+
T Consensus 14 Re~yE~L~kinEsLEL~e~~pq~~v~~yR~qqq~~~~ 50 (61)
T 4a9z_A 14 RETYEMLLKIKESLELMQYLPQHTIETYRQQQQQQHQ 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHTTCC-
T ss_pred hhHHHHHHHHHHHHHHHhccchhhhhhHHHHHhHHHH
Confidence 3456788887765 4444444555544444
No 414
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=20.17 E-value=4.1e+02 Score=22.68 Aligned_cols=24 Identities=8% Similarity=0.278 Sum_probs=14.7
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEcC
Q 003177 734 SVCWNTSGEYLASVSDELVRVWSIG 758 (842)
Q Consensus 734 sl~~spdg~~LasgsDg~I~IwDl~ 758 (842)
.+.+..+|++++...++. .+|.-.
T Consensus 54 ~l~l~~dGNLVl~~~~~~-~~W~S~ 77 (110)
T 3a0c_A 54 RLTLHNNGNLVIYDQSNR-VIWQTK 77 (110)
T ss_dssp EEEECTTSCEEEECTTCC-EEEECC
T ss_pred EEEEeCCCCEEEECCCCc-EEEecC
Confidence 466677787776544443 467644
Done!