BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003178
(842 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/350 (33%), Positives = 186/350 (53%), Gaps = 30/350 (8%)
Query: 392 KALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
KA+T + +T VQ+ T+ L E D + +AKTGTGK+ AFL+P + ++ S
Sbjct: 34 KAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 93
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI---GVLTLVGGTRFKVDQRRLESD 506
+ +I+ PTR+LA QI AE + + G+ ++LVGGT F+ ++
Sbjct: 94 YM----VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL 149
Query: 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRR 566
I++ATPGRL+D +E S R + K VLDEAD LL++GFR D+E I L +
Sbjct: 150 RPNIVIATPGRLIDVLEKYSNKFFRFVDYK--VLDEADRLLEIGFRDDLETISGILNEKN 207
Query: 567 -------QSLLFSATM-------PKELVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHE 612
++LLFSAT+ ++ K+E ++DTV E +I QS +++
Sbjct: 208 SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267
Query: 613 LH--FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR-EMKMN--VREMYSRKPQ 667
+ F + H+ K+ +YK I+F T TS L +L+ E K + + E + + Q
Sbjct: 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQ 327
Query: 668 LYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
R + + F+ + ILV +DV ARGMD+P+V V+Q+G+P + YIH
Sbjct: 328 NKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 377
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 172 bits (436), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 118/350 (33%), Positives = 186/350 (53%), Gaps = 30/350 (8%)
Query: 392 KALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
KA+T + +T VQ+ T+ L E D + +AKTGTGK+ AFL+P + ++ S
Sbjct: 85 KAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 144
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI---GVLTLVGGTRFKVDQRRLESD 506
+ +I+ PTR+LA QI AE + + G+ ++LVGGT F+ ++
Sbjct: 145 YM----VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL 200
Query: 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRR 566
I++ATPGRL+D +E S R + K VLDEAD LL++GFR D+E I L +
Sbjct: 201 RPNIVIATPGRLIDVLEKYSNKFFRFVDYK--VLDEADRLLEIGFRDDLETISGILNEKN 258
Query: 567 -------QSLLFSATM-------PKELVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHE 612
++LLFSAT+ ++ K+E ++DTV E +I QS +++
Sbjct: 259 SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318
Query: 613 LH--FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR-EMKMN--VREMYSRKPQ 667
+ F + H+ K+ +YK I+F T TS L +L+ E K + + E + + Q
Sbjct: 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQ 378
Query: 668 LYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
R + + F+ + ILV +DV ARGMD+P+V V+Q+G+P + YIH
Sbjct: 379 NKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 428
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/350 (33%), Positives = 186/350 (53%), Gaps = 30/350 (8%)
Query: 392 KALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
KA+T + +T VQ+ T+ L E D + +AKTGTGK+ AFL+P + ++ S
Sbjct: 34 KAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 93
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI---GVLTLVGGTRFKVDQRRLESD 506
+ +I+ PTR+LA QI AE + + G+ ++LVGGT F+ ++
Sbjct: 94 YM----VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL 149
Query: 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRR 566
I++ATPGRL+D +E S R + K VLDEAD LL++GFR D+E I L +
Sbjct: 150 RPNIVIATPGRLIDVLEKYSNKFFRFVDYK--VLDEADRLLEIGFRDDLETISGILNEKN 207
Query: 567 -------QSLLFSATM-------PKELVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHE 612
++LLFSAT+ ++ K+E ++DTV E +I QS +++
Sbjct: 208 SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267
Query: 613 LH--FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR-EMKMN--VREMYSRKPQ 667
+ F + H+ K+ +YK I+F T TS L +L+ E K + + E + + Q
Sbjct: 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQ 327
Query: 668 LYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
R + + F+ + ILV +DV ARGMD+P+V V+Q+G+P + YIH
Sbjct: 328 NKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 377
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 170/338 (50%), Gaps = 22/338 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIE 439
F+E +S + A+ G+ + T +Q + L + + V +A+TG+GK+ +F +P IE
Sbjct: 8 FNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V + I +IL PTRELA Q+A E I LK + + + + GG
Sbjct: 68 LVNENNG---------IEAIILTPTRELAIQVADE-IESLKGNKNLKIAKIYGGKAIYPQ 117
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L++ I+V TPGR+LDHI N+ L+ L +K +LDEAD L+ GF KDVE I+
Sbjct: 118 IKALKN--ANIVVGTPGRILDHI-NRGTLN--LKNVKYFILDEADEXLNXGFIKDVEKIL 172
Query: 560 DCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILH 619
+ + ++ LLFSAT P+E +L Y + I+QS + F+ L
Sbjct: 173 NACNKDKRILLFSATXPRE-ILNLAKKYXGDYSFIKAKINANIEQSYVEVNENERFEALC 231
Query: 620 HLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRA 679
LLK ++ +VFC T T L LR++ ++ Q R+++ F+
Sbjct: 232 RLLK-----NKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQ 286
Query: 680 SKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
K IL+ +DV +RG+D D+ V+ +P + E Y H
Sbjct: 287 KKIRILIATDVXSRGIDVNDLNCVINYHLPQNPESYXH 324
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 112/351 (31%), Positives = 176/351 (50%), Gaps = 40/351 (11%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FD+ + ++ + G+ + + +Q+ + +EG D + +A++GTGK+ F + A++
Sbjct: 23 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 82
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ TS Q L+L PTRELA QI +AL + D I V +GGT F D
Sbjct: 83 RI--DTSVKAPQ------ALMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVED 133
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L QI+V TPGR+ D+I+ + R +KM +LDEAD +L GF++ + I
Sbjct: 134 AEGLRD--AQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIF 188
Query: 560 DCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKI------------KQSCL 607
LP Q +L SATMP +++ V + PV+I KQ +
Sbjct: 189 TLLPPTTQVVLLSATMPNDVL---------EVTTKFMRNPVRILVKKDELTLEGIKQFYV 239
Query: 608 -VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKP 666
V E ++ L L + I T + ++FC+T L LR K V +YS P
Sbjct: 240 NVEEEEYKYECLTDLY-DSISVT---QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLP 295
Query: 667 QLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
Q RD I +EFR+ IL+++D+ ARG+D V+ V+ +P ++E YIH
Sbjct: 296 QQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 346
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 173/341 (50%), Gaps = 21/341 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F + ++
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ TQ LIL PTRELA QI +AL ++ + +GGT D
Sbjct: 100 L--DIQVRETQ------ALILAPTRELAVQIQKGLLAL-GDYMNVQCHACIGGTNVGEDI 150
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + ++
Sbjct: 151 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 206
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVK---IKQSCL-VAPHELHFQ 616
LP Q +L SAT+P E++ D + + + IKQ + V E F
Sbjct: 207 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFD 266
Query: 617 ILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEE 676
L L + + ++FC+T L +RE V M+ PQ R+ I +E
Sbjct: 267 TLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322
Query: 677 FRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
FR+ +L+++DV ARG+D P V+ ++ +P +RE YIH
Sbjct: 323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 363
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 173/341 (50%), Gaps = 21/341 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F + ++
Sbjct: 39 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 98
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ TQ LIL PTRELA QI +AL ++ + +GGT D
Sbjct: 99 L--DIQVRETQ------ALILAPTRELAVQIQKGLLAL-GDYMNVQCHACIGGTNVGEDI 149
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + ++
Sbjct: 150 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 205
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVK---IKQSCL-VAPHELHFQ 616
LP Q +L SAT+P E++ D + + + IKQ + V E F
Sbjct: 206 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFD 265
Query: 617 ILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEE 676
L L + + ++FC+T L +RE V M+ PQ R+ I +E
Sbjct: 266 TLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 321
Query: 677 FRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
FR+ +L+++DV ARG+D P V+ ++ +P +RE YIH
Sbjct: 322 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 362
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 173/341 (50%), Gaps = 21/341 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F + ++
Sbjct: 18 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 77
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ TQ LIL PTRELA QI +AL ++ + +GGT D
Sbjct: 78 L--DIQVRETQ------ALILAPTRELAVQIQKGLLAL-GDYMNVQCHACIGGTNVGEDI 128
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + ++
Sbjct: 129 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 184
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVK---IKQSCL-VAPHELHFQ 616
LP Q +L SAT+P E++ D + + + IKQ + V E F
Sbjct: 185 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFD 244
Query: 617 ILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEE 676
L L + + ++FC+T L +RE V M+ PQ R+ I +E
Sbjct: 245 TLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 300
Query: 677 FRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
FR+ +L+++DV ARG+D P V+ ++ +P +RE YIH
Sbjct: 301 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 341
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 173/341 (50%), Gaps = 21/341 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F + ++
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ TQ LIL PTRELA QI +AL ++ + +GGT D
Sbjct: 100 L--DIQVRETQ------ALILAPTRELAVQIQKGLLAL-GDYMNVQCHACIGGTNVGEDI 150
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + ++
Sbjct: 151 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 206
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVK---IKQSCL-VAPHELHFQ 616
LP Q +L SAT+P E++ D + + + IKQ + V E F
Sbjct: 207 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFD 266
Query: 617 ILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEE 676
L L + + ++FC+T L +RE V M+ PQ R+ I +E
Sbjct: 267 TLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322
Query: 677 FRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
FR+ +L+++DV ARG+D P V+ ++ +P +RE YIH
Sbjct: 323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 363
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 149 bits (376), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 175/344 (50%), Gaps = 27/344 (7%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F +L
Sbjct: 3 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQC 62
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
++ ++ T + LIL PTRELA Q+ +AL ++ + +GGT
Sbjct: 63 LDIQVRETQA-----------LILAPTRELAVQVQKGLLAL-GDYMNVQCHACIGGTNVG 110
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
D R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + +
Sbjct: 111 EDIRKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYD 166
Query: 558 IVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVE---TPVKIKQSCL-VAPHEL 613
+ LP Q +L SAT+P E++ D + + T IKQ + V E
Sbjct: 167 VYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEW 226
Query: 614 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRI 673
F L L + + ++FC+T L +RE V M+ PQ R+ I
Sbjct: 227 KFDTLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESI 282
Query: 674 SEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
+EFR+ +L+++DV ARG+D P V+ ++ +P +RE YIH
Sbjct: 283 MKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 326
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 175/344 (50%), Gaps = 27/344 (7%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F +L
Sbjct: 3 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQC 62
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
++ ++ T + LIL PTRELA Q+ +AL ++ + +GGT
Sbjct: 63 LDIQVRETQA-----------LILAPTRELAVQVQKGLLAL-GDYMNVQSHACIGGTNVG 110
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
D R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + +
Sbjct: 111 EDIRKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYD 166
Query: 558 IVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVK---IKQSCL-VAPHEL 613
+ LP Q +L SAT+P E++ D + + + IKQ + V E
Sbjct: 167 VYRYLPPATQVVLISATLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEW 226
Query: 614 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRI 673
F L L + + ++FC+T L +RE V M+ PQ R+ I
Sbjct: 227 KFDTLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESI 282
Query: 674 SEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
+EFR+ +L+++DV ARG+D P V+ ++ +P +RE YIH
Sbjct: 283 MKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 326
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/342 (31%), Positives = 169/342 (49%), Gaps = 22/342 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FD+ + ++ + G+ + + +Q+ + +EG D + +A++GTGK+ F + A++
Sbjct: 22 KFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAALQ 81
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ TS Q L L PTRELA QI + + L H I V +GGT F D
Sbjct: 82 RI--DTSVKAPQ------ALXLAPTRELALQIQ-KVVXALAFHXDIKVHACIGGTSFVED 132
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L QI+V TPGR+ D+I+ + R +K +LDEAD L GF++ + I
Sbjct: 133 AEGLRD--AQIVVGTPGRVFDNIQRRR---FRTDKIKXFILDEADEXLSSGFKEQIYQIF 187
Query: 560 DCLPRRRQSLLFSATMPK---ELVLKREHTYIDTVGLGSVETPVKIKQSCL-VAPHELHF 615
LP Q +L SAT P E+ K + + T IKQ + V E +
Sbjct: 188 TLLPPTTQVVLLSATXPNDVLEVTTKFXRNPVRILVKKDELTLEGIKQFYVNVEEEEYKY 247
Query: 616 QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISE 675
+ L L + I T + ++FC+T L LR K V +YS PQ RD I +
Sbjct: 248 ECLTDLY-DSISVT---QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXK 303
Query: 676 EFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
EFR+ IL+++D+ ARG+D V+ V+ +P ++E YIH
Sbjct: 304 EFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 345
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 174/356 (48%), Gaps = 50/356 (14%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD+ +S ++ + A G+ + + +Q+ + C++G D + +A++GTGK+ F +L
Sbjct: 42 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 101
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
IE LKAT + L+L PTRELA QI +A L ++ G +GGT +
Sbjct: 102 IELDLKATQA-----------LVLAPTRELAQQIQKVVMA-LGDYMGASCHACIGGTNVR 149
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ ++L+ + I+V TPGR+ D + N+ LS + +KM VLDEAD +L GF+ + +
Sbjct: 150 AEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKY--IKMFVLDEADEMLSRGFKDQIYD 206
Query: 558 IVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQI 617
I L Q +L SATMP + VL+ ++ P++I LV EL +
Sbjct: 207 IFQKLNSNTQVVLLSATMPSD-VLEVTKKFM--------RDPIRI----LVKKEELTLEG 253
Query: 618 LHHL----------------LKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREM 661
+ L E + T + ++F +T L + V M
Sbjct: 254 IRQFYINVEREEWKLDTLCDLYETLTIT---QAVIFINTRRKVDWLTEKMHARDFTVSAM 310
Query: 662 YSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
+ Q RD I EFR+ +L+T+D+ ARG+D V+ V+ +P +RE YIH
Sbjct: 311 HGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 366
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 142 bits (358), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 173/356 (48%), Gaps = 50/356 (14%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD+ +S ++ + A G+ + + +Q+ + C++G D + +A++GTGK+ F +L
Sbjct: 16 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 75
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
IE LKAT + L+L PTRELA QI +A L ++ G +GGT +
Sbjct: 76 IELDLKATQA-----------LVLAPTRELAQQIQKVVMA-LGDYMGASCHACIGGTNVR 123
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ ++L+ + I+V TPGR+ D + N+ LS + +KM VLDEAD +L GF+ + +
Sbjct: 124 AEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKY--IKMFVLDEADEMLSRGFKDQIYD 180
Query: 558 IVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQI 617
I L Q +L SATMP +++ V + P++I LV EL +
Sbjct: 181 IFQKLNSNTQVVLLSATMPSDVL---------EVTKKFMRDPIRI----LVKKEELTLEG 227
Query: 618 LHHL----------------LKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREM 661
+ L E + T + ++F +T L + V M
Sbjct: 228 IRQFYINVEREEWKLDTLCDLYETLTIT---QAVIFINTRRKVDWLTEKMHARDFTVSAM 284
Query: 662 YSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
+ Q RD I EFR+ +L+T+D+ ARG+D V+ V+ +P +RE YIH
Sbjct: 285 HGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 340
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 159/329 (48%), Gaps = 31/329 (9%)
Query: 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456
AG+ + + +QE + + G+D + +AK GTGK+ AF++P +E V + I
Sbjct: 39 AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNK--------I 90
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
LI+ PTRELA Q ++ + L H GI + GGT + D RL ++ ILV TPG
Sbjct: 91 QALIMVPTRELALQ-TSQVVRTLGKHCGISCMVTTGGTNLRDDILRL-NETVHILVGTPG 148
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576
R+LD K L + ++DEAD +L F+ +E I+ LP QSLLFSAT P
Sbjct: 149 RVLDLASRKVA---DLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFP 205
Query: 577 ---KELVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYK 633
KE ++K H + + L T I Q ++ + K H L T K
Sbjct: 206 LTVKEFMVKHLHKPYE-INLMEELTLKGITQ---------YYAFVEERQKLHCLNTLFSK 255
Query: 634 V-----IVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTS 688
+ I+FC++ LL + ++ + ++R Q R+++ EFR K LV S
Sbjct: 256 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS 315
Query: 689 DVSARGMDYPDVTSVVQVGIPPDREQYIH 717
D+ RG+D V V+ P E Y+H
Sbjct: 316 DLLTRGIDIQAVNVVINFDFPKTAETYLH 344
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 26 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 85
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 86 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 140
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + ++
Sbjct: 141 AERINN--INILVCTPGRLLQHMDET--VSFHATDLQMLVLDEADRILDMGFADTMNAVI 196
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 197 ENLPKKRQTLLFSATQTKSV 216
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 127/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 65 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL----- 119
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L +
Sbjct: 120 -RFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-GNG 176
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 177 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 234
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 235 TMLFSATQTRKVEDLARISLKKEPLYV 261
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 171/347 (49%), Gaps = 24/347 (6%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
+ F + + I + +GY T +Q+ ++ G+D + A+TG+GK+ AFLLP +
Sbjct: 56 QHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPIL 115
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL-LKNHDGIGVLTLVGGTRFK 497
+L+ +L P V+I+ PTRELA QI EA +++ IG+ + GGT F+
Sbjct: 116 SKLLE--DPHELELGRP-QVVIVSPTRELAIQIFNEARKFAFESYLKIGI--VYGGTSFR 170
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
Q + C +++ATPGRLLD ++ + + +VLDEAD +LD+GF +D+
Sbjct: 171 -HQNECITRGCHVVIATPGRLLDFVDRT---FITFEDTRFVVLDEADRMLDMGFSEDMRR 226
Query: 558 IVDCLPRR--RQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKIKQSCLVAP 610
I+ + R Q+L+FSAT P+E+ + + ++ +G + V KQ+
Sbjct: 227 IMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDV--KQTIYEVN 284
Query: 611 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYR 670
L +L E GT IVF T L L E + ++ + Q R
Sbjct: 285 KYAKRSKLIEILSEQADGT-----IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQR 339
Query: 671 DRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
++ +F+ +L+ + V++RG+D ++ V+ +P + Y+H
Sbjct: 340 EQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVH 386
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 129 bits (323), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 105/333 (31%), Positives = 168/333 (50%), Gaps = 44/333 (13%)
Query: 392 KALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQ 451
+A+ G+ T VQ T+ L+GK+ VV+AKTG+GK+ A+ +P +E +K+
Sbjct: 7 QAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKS------- 59
Query: 452 LVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQIL 511
L++ PTREL Q+A+ + + D V + GG +K R+ + I+
Sbjct: 60 -------LVVTPTRELTRQVASHIRDIGRYMD-TKVAEVYGGMPYKAQINRVRN--ADIV 109
Query: 512 VATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571
VATPGRLLD S + L +++++DEAD + ++GF D++ I+ R+ + LF
Sbjct: 110 VATPGRLLDLW---SKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLF 166
Query: 572 SATMPKEL--VLKREHTYID----TVGLGSVETP-VKIKQSCLVAPHELHFQILHHLLKE 624
SAT+P+E+ V+K T + +GL +VE V +K ++ L+E
Sbjct: 167 SATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDD---------WRSKVQALRE 217
Query: 625 HILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLI 684
+ D VIVF T + L L N E+ PQ R+R + FR + +
Sbjct: 218 N----KDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDM 269
Query: 685 LVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
L+T+DV++RG+D P V V+ P D YIH
Sbjct: 270 LITTDVASRGLDIPLVEKVINFDAPQDLRTYIH 302
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 122/209 (58%), Gaps = 15/209 (7%)
Query: 374 PILSQ---KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKS 430
PI+ + K F + G++ + +A G+ + T++Q + L+G+D + A+TG+GK+
Sbjct: 35 PIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKT 94
Query: 431 IAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL 490
AF LP + A+L+ ++ L+L PTRELA QI+ E L + G+ +
Sbjct: 95 GAFALPILNALLETPQR--------LFALVLTPTRELAFQIS-EQFEALGSSIGVQSAVI 145
Query: 491 VGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG 550
VGG L P I++ATPGRL+DH+EN G ++R LK LV+DEAD +L++
Sbjct: 146 VGGIDSMSQSLALAKKP-HIIIATPGRLIDHLENTKGFNLR--ALKYLVMDEADRILNMD 202
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPKEL 579
F +V+ I+ +PR R++ LFSATM K++
Sbjct: 203 FETEVDKILKVIPRDRKTFLFSATMTKKV 231
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 112/358 (31%), Positives = 165/358 (46%), Gaps = 33/358 (9%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + + + + Y + T VQ+ + E +D + A+TG+GK+ AFLLP +
Sbjct: 17 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 76
Query: 441 V-----------LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLT 489
+ +K + PI L+L PTRELA QI EA +
Sbjct: 77 IYSDGPGEALRAMKENGRYGRRKQYPI-SLVLAPTRELAVQIYEEARKF-SYRSRVRPCV 134
Query: 490 LVGGTRFKVDQRRLESDPCQILVATPGRLLDHIE-NKSGLSVRLMGLKMLVLDEADHLLD 548
+ GG R LE C +LVATPGRL+D +E K GL K LVLDEAD +LD
Sbjct: 135 VYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLDF----CKYLVLDEADRMLD 189
Query: 549 LGFRKDVENIV--DCLPRR--RQSLLFSATMPKEL-VLKR----EHTYIDTVGLGSVETP 599
+GF + IV D +P + R +++FSAT PKE+ +L R E+ ++ +GS T
Sbjct: 190 MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGS--TS 247
Query: 600 VKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVR 659
I Q + L LL D +VF T L L
Sbjct: 248 ENITQKVVWVEESDKRSFLLDLLNA---TGKDSLTLVFVETKKGADSLEDFLYHEGYACT 304
Query: 660 EMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
++ + Q R+ +FR+ K ILV + V+ARG+D +V V+ +P D E+Y+H
Sbjct: 305 SIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 362
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 101/349 (28%), Positives = 164/349 (46%), Gaps = 34/349 (9%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + P ++A+ G+ + VQ + + G D + +AK+G GK+ F+L A
Sbjct: 9 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVL----A 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L+ T Q + VL++C TRELA QI+ E K + V GG K D+
Sbjct: 65 TLQQLEPVTGQ----VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 120
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIV 559
L+ + I+V TPGR+L NK S+ L +K +LDEAD +L+ L R+DV+ I
Sbjct: 121 EVLKKNCPHIVVGTPGRILALARNK---SLNLKHIKHFILDEADKMLEQLDMRRDVQEIF 177
Query: 560 DCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKI--KQSCLVAPHELHFQI 617
P +Q ++FSAT+ KE I V ++ P++I + H L Q
Sbjct: 178 RMTPHEKQVMMFSATLSKE---------IRPVCRKFMQDPMEIFVDDETKLTLHGL--QQ 226
Query: 618 LHHLLKEH--------ILGTPDY-KVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQL 668
+ LK++ +L ++ +V++F + L LL E ++ PQ
Sbjct: 227 YYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQE 286
Query: 669 YRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
R ++F+ +R ILV +++ RGMD V +P D + Y+H
Sbjct: 287 ERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLH 335
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 163/349 (46%), Gaps = 34/349 (9%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + P ++A+ G+ + VQ + + G D + +AK+G GK+ F+L A
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVL----A 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L+ T Q + VL++C TRELA QI+ E K + V GG K D+
Sbjct: 66 TLQQLEPVTGQ----VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIV 559
L+ + I+V TPGR+L NK S+ L +K +LDE D +L+ L R+DV+ I
Sbjct: 122 EVLKKNCPHIVVGTPGRILALARNK---SLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 178
Query: 560 DCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKI--KQSCLVAPHELHFQI 617
P +Q ++FSAT+ KE I V ++ P++I + H L Q
Sbjct: 179 RMTPHEKQVMMFSATLSKE---------IRPVCRKFMQDPMEIFVDDETKLTLHGL--QQ 227
Query: 618 LHHLLKEH--------ILGTPDY-KVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQL 668
+ LK++ +L ++ +V++F + L LL E ++ PQ
Sbjct: 228 YYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQE 287
Query: 669 YRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
R ++F+ +R ILV +++ RGMD V +P D + Y+H
Sbjct: 288 ERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLH 336
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 162/349 (46%), Gaps = 34/349 (9%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + P ++A+ G+ + VQ + + G D + +AK+G GK+ F+L ++
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 69
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ T + VL++C TRELA QI+ E K + V GG K D+
Sbjct: 70 LEPVTGQ--------VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIV 559
L+ + I+V TPGR+L NK S+ L +K +LDE D +L+ L R+DV+ I
Sbjct: 122 EVLKKNCPHIVVGTPGRILALARNK---SLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 178
Query: 560 DCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKI--KQSCLVAPHELHFQI 617
P +Q ++FSAT+ KE I V ++ P++I + H L Q
Sbjct: 179 RMTPHEKQVMMFSATLSKE---------IRPVCRKFMQDPMEIFVDDETKLTLHGL--QQ 227
Query: 618 LHHLLKEH--------ILGTPDY-KVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQL 668
+ LK++ +L ++ +V++F + L LL E ++ PQ
Sbjct: 228 YYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQE 287
Query: 669 YRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
R ++F+ +R ILV +++ RGMD V +P D + Y+H
Sbjct: 288 ERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLH 336
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 111/180 (61%), Gaps = 14/180 (7%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV-LKATSSSTTQLVPPI 456
G+ + + +QE ++ L G+D + +AK GTGKS A+L+P +E + LK + I
Sbjct: 22 GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDN---------I 72
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
+++ PTRELA Q++ I + K+ G V+ GGT + D RL+ D +++ATPG
Sbjct: 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPG 131
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576
R+LD I K G++ ++ ++M+VLDEAD LL F + +E+I+ LP+ RQ LL+SAT P
Sbjct: 132 RILDLI--KKGVA-KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 188
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 112/196 (57%), Gaps = 12/196 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + P ++AL G T +Q A L LEGKD + +A+TGTGK++AF LP E
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + L+L PTRELA Q+A+E A+ + + V+ + GGT + +
Sbjct: 63 LAPSQERGRKP-----RALVLTPTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQK 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +VATPGR LD++ + G+ + L +++ VLDEAD +L +GF ++VE ++
Sbjct: 115 EALLRG-ADAVVATPGRALDYL--RQGV-LDLSRVEVAVLDEADEMLSMGFEEEVEALLS 170
Query: 561 CLPRRRQSLLFSATMP 576
P RQ+LLFSAT+P
Sbjct: 171 ATPPSRQTLLFSATLP 186
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 112/196 (57%), Gaps = 12/196 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + P ++AL G T ++ A L LEGKD + +A+TGTGK++AF LP E
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + L+L PTRELA Q+A+E A+ + + V+ + GGT + +
Sbjct: 63 LAPSQERGRKP-----RALVLTPTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQK 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +VATPGR LD++ + G+ + L +++ VLDEAD +L +GF ++VE ++
Sbjct: 115 EALLRG-ADAVVATPGRALDYL--RQGV-LDLSRVEVAVLDEADEMLSMGFEEEVEALLS 170
Query: 561 CLPRRRQSLLFSATMP 576
P RQ+LLFSAT+P
Sbjct: 171 ATPPSRQTLLFSATLP 186
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 111/207 (53%), Gaps = 12/207 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
+ FDE + P + A Y + T +Q+ + A LE +D + A+TG+GK+ AFL+P I
Sbjct: 23 ENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPII 82
Query: 439 EAVL--KATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
++ ++ P LIL PTRELA QI +E+ N + + GG
Sbjct: 83 NHLVCQDLNQQRYSKTAYP-KCLILAPTRELAIQILSESQKFSLN-TPLRSCVVYGGADT 140
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
R ++ C +LVATPGRL+D IE + L K +VLDEAD +LD+GF +
Sbjct: 141 HSQIREVQMG-CHLLVATPGRLVDFIEKN---KISLEFCKYIVLDEADRMLDMGFEPQIR 196
Query: 557 NIVD--CLPR--RRQSLLFSATMPKEL 579
I++ +P RQ+L+FSAT PKE+
Sbjct: 197 KIIEESNMPSGINRQTLMFSATFPKEI 223
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 167/352 (47%), Gaps = 34/352 (9%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLP 436
K FDE G++P +K + A + + +++QE L L ++ + ++++GTGK+ AF L
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
+ V +S + L P+RELA Q E + + I +V +
Sbjct: 65 MLTRVNPEDASPQA--------ICLAPSRELARQ-TLEVVQEMGKFTKITSQLIVPDSFE 115
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-GFRKDV 555
K Q Q++V TPG +LD + K ++L +K+ VLDEAD++LD G
Sbjct: 116 KNKQIN-----AQVIVGTPGTVLDLMRRKL---MQLQKIKIFVLDEADNMLDQQGLGDQC 167
Query: 556 ENIVDCLPRRRQSLLFSATMPKEL--VLKREHTYIDTVGLGSVETPV-KIKQSCLVAPHE 612
+ LP+ Q +LFSAT + K+ +T+ L + E V IKQ + +E
Sbjct: 168 IRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNE 227
Query: 613 L-HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRD 671
F +L L +G+ I+F +T ++LY L+ V ++ RD
Sbjct: 228 ADKFDVLTELYGLMTIGSS----IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERD 283
Query: 672 RISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------PDREQYIH 717
R+ ++FR + +L+T++V ARG+D P V+ VV +P D YIH
Sbjct: 284 RLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIH 335
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 167/352 (47%), Gaps = 34/352 (9%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLP 436
K FDE G++P +K + A + + +++QE L L ++ + ++++GTGK+ AF L
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
+ V +S + L P+RELA Q E + + I +V +
Sbjct: 65 MLTRVNPEDASPQA--------ICLAPSRELARQ-TLEVVQEMGKFTKITSQLIVPDSFE 115
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-GFRKDV 555
K Q Q++V TPG +LD + K ++L +K+ VLDEAD++LD G
Sbjct: 116 KNKQIN-----AQVIVGTPGTVLDLMRRKL---MQLQKIKIFVLDEADNMLDQQGLGDQC 167
Query: 556 ENIVDCLPRRRQSLLFSATMPKEL--VLKREHTYIDTVGLGSVETPV-KIKQSCLVAPHE 612
+ LP+ Q +LFSAT + K+ +T+ L + E V IKQ + +E
Sbjct: 168 IRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNE 227
Query: 613 L-HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRD 671
F +L L +G+ I+F +T ++LY L+ V ++ RD
Sbjct: 228 ADKFDVLTELYGVMTIGSS----IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERD 283
Query: 672 RISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------PDREQYIH 717
R+ ++FR + +L+T++V ARG+D P V+ VV +P D YIH
Sbjct: 284 RLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIH 335
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 160/367 (43%), Gaps = 51/367 (13%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 87 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 146
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 147 AFVLAMLSQVEPANKYPQC--------LCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 198
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 199 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 252
Query: 551 FRKDVENIVDCLPRRRQSLLFSATM--------------PKELVLKREHTYIDTVGLGSV 596
+ I LPR Q LLFSAT P + LKRE +DT+ V
Sbjct: 253 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYV 312
Query: 597 ETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKM 656
L + + FQ L +L + + ++FC T S L L +
Sbjct: 313 ----------LCSSRDEKFQALCNLYGAITIA----QAMIFCHTRKTASWLAAELSKEGH 358
Query: 657 NVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------P 710
V + R + E FR K +LVT++V ARG+D V+ V+ +P P
Sbjct: 359 QVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNP 418
Query: 711 DREQYIH 717
D E Y+H
Sbjct: 419 DNETYLH 425
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 105 bits (263), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 109/201 (54%), Gaps = 14/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FD+ + ++ + G+ + + +Q+ + +EG D + +A++GTGK+ F + A++
Sbjct: 22 KFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 81
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ TS Q L+L PTRELA QI +AL + D I V +GGT F D
Sbjct: 82 RI--DTSVKAPQ------ALMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVED 132
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L QI+V TPGR+ D+I+ + R +KM +LDEAD +L GF++ + I
Sbjct: 133 AEGLRD--AQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIF 187
Query: 560 DCLPRRRQSLLFSATMPKELV 580
LP Q +L SATMP +++
Sbjct: 188 TLLPPTTQVVLLSATMPNDVL 208
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 160/367 (43%), Gaps = 51/367 (13%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 79
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 80 AFVLAMLSQVEPANKYPQC--------LCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 131
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 132 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 185
Query: 551 FRKDVENIVDCLPRRRQSLLFSATM--------------PKELVLKREHTYIDTVGLGSV 596
+ I LPR Q LLFSAT P + LKRE +DT+ V
Sbjct: 186 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYV 245
Query: 597 ETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKM 656
L + + FQ L +L + + ++FC T S L L +
Sbjct: 246 ----------LCSSRDEKFQALCNLYGAITIA----QAMIFCHTRKTASWLAAELSKEGH 291
Query: 657 NVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------P 710
V + R + E FR K +LVT++V ARG+D V+ V+ +P P
Sbjct: 292 QVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNP 351
Query: 711 DREQYIH 717
D E Y+H
Sbjct: 352 DNETYLH 358
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 109/201 (54%), Gaps = 14/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FD+ + ++ + G+ + + +Q+ + +EG D + +A++GTGK+ F + A++
Sbjct: 15 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 74
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ TS Q L+L PTRELA QI +AL + D I V +GGT F D
Sbjct: 75 RI--DTSVKAPQ------ALMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVED 125
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L QI+V TPGR+ D+I+ + R +KM +LDEAD +L GF++ + I
Sbjct: 126 AEGLRD--AQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIF 180
Query: 560 DCLPRRRQSLLFSATMPKELV 580
LP Q +L SATMP +++
Sbjct: 181 TLLPPTTQVVLLSATMPNDVL 201
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 111/203 (54%), Gaps = 18/203 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD+ + ++ + A G+ + + +Q+ + C++G D + +A++GTGK+ F +L
Sbjct: 32 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 91
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
+E K T + L+L PTRELA QI + I L ++ G +GGT +
Sbjct: 92 LEIEFKETQA-----------LVLAPTRELAQQI-QKVILALGDYMGATCHACIGGTNVR 139
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ ++L+++ I+V TPGR+ D + N+ LS + +KM VLDEAD +L GF+ +
Sbjct: 140 NEMQKLQAEAPHIVVGTPGRVFDML-NRRYLSPKW--IKMFVLDEADEMLSRGFKDQIYE 196
Query: 558 IVDCLPRRRQSLLFSATMPKELV 580
I L Q +L SATMP +++
Sbjct: 197 IFQKLNTSIQVVLLSATMPTDVL 219
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 160/367 (43%), Gaps = 51/367 (13%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 57 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 116
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 117 AFVLAMLSQVEPANKYPQC--------LCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 168
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 169 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 222
Query: 551 FRKDVENIVDCLPRRRQSLLFSATM--------------PKELVLKREHTYIDTVGLGSV 596
+ I LPR Q LLFSAT P + LKRE +DT+ V
Sbjct: 223 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYV 282
Query: 597 ETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKM 656
L + + FQ L +L + + ++FC T S L L +
Sbjct: 283 ----------LCSSRDEKFQALCNLYGAITIA----QAMIFCHTRKTASWLAAELSKEGH 328
Query: 657 NVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------P 710
V + R + E FR K +LVT++V ARG+D V+ V+ +P P
Sbjct: 329 QVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNP 388
Query: 711 DREQYIH 717
D E Y+H
Sbjct: 389 DNETYLH 395
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 160/367 (43%), Gaps = 51/367 (13%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 36 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 95
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 96 AFVLAMLSQVEPANKYPQC--------LCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 147
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 148 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 201
Query: 551 FRKDVENIVDCLPRRRQSLLFSATM--------------PKELVLKREHTYIDTVGLGSV 596
+ I LPR Q LLFSAT P + LKRE +DT+ V
Sbjct: 202 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYV 261
Query: 597 ETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKM 656
L + + FQ L +L + + ++FC T S L L +
Sbjct: 262 ----------LCSSRDEKFQALCNLYGAITIA----QAMIFCHTRKTASWLAAELSKEGH 307
Query: 657 NVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------P 710
V + R + E FR K +LVT++V ARG+D V+ V+ +P P
Sbjct: 308 QVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNP 367
Query: 711 DREQYIH 717
D E Y+H
Sbjct: 368 DNETYLH 374
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 12/195 (6%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+ P ++A+ G+ + VQ + + G D + +AK+G GK+ F+L A L+
Sbjct: 21 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVL----ATLQQL 76
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
T Q + VL++C TRELA QI+ E K + V GG K D+ L+
Sbjct: 77 EPVTGQ----VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 132
Query: 506 DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPR 564
+ I+V TPGR+L NK S+ L +K +LDE D +L+ L R+DV+ I P
Sbjct: 133 NCPHIVVGTPGRILALARNK---SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 189
Query: 565 RRQSLLFSATMPKEL 579
+Q ++FSAT+ KE+
Sbjct: 190 EKQVMMFSATLSKEI 204
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 102 bits (255), Expect = 7e-22, Method: Composition-based stats.
Identities = 66/203 (32%), Positives = 106/203 (52%), Gaps = 18/203 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD+ +S ++ + A G+ + +Q+ + C+ G D + +A++GTG + F +L
Sbjct: 17 FDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISILQQ 76
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
IE L AT + L+L PTRELA QI +AL ++ G +GGT +
Sbjct: 77 IELDLXATQA-----------LVLAPTRELAQQIQXVVMAL-GDYMGASCHACIGGTNVR 124
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ + L+ + I+V TPGR+ D + N+ LS + M VLDEAD +L GF + +
Sbjct: 125 AEVQXLQMEAPHIIVGTPGRVFDML-NRRYLSPXY--IXMFVLDEADEMLSRGFXDQIYD 181
Query: 558 IVDCLPRRRQSLLFSATMPKELV 580
I L Q +L SATMP +++
Sbjct: 182 IFQXLNSNTQVVLLSATMPSDVL 204
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 100 bits (249), Expect = 4e-21, Method: Composition-based stats.
Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 15/206 (7%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
++ +F P I+A+ + + T +QE + L G+ V +++TGTGK+ A+LLP
Sbjct: 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLP 61
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK---NHDGIGVLTLVGG 493
E + + + +I PTRELA+QI E + + K I L+GG
Sbjct: 62 IXEKIKPERAE--------VQAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGG 113
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
T + +L P I++ TPGR+ D I + ++ + +LV+DEAD LD GF
Sbjct: 114 TDKQKALEKLNVQP-HIVIGTPGRINDFIREQ---ALDVHTAHILVVDEADLXLDXGFIT 169
Query: 554 DVENIVDCLPRRRQSLLFSATMPKEL 579
DV+ I P+ Q L+FSAT+P++L
Sbjct: 170 DVDQIAARXPKDLQXLVFSATIPEKL 195
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 101/206 (49%), Gaps = 11/206 (5%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P+L+ F E + + + + T +Q L G D V A+TG+GK++++
Sbjct: 41 PVLN---FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 97
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
LLPAI + PI L+L PTRELA Q+ A + + + GG
Sbjct: 98 LLPAIVHINHQPFLERGD--GPI-CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGG 153
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
R LE +I +ATPGRL+D +E L LVLDEAD +LD+GF
Sbjct: 154 APKGPQIRDLERG-VEICIATPGRLIDFLECGK---TNLRRTTYLVLDEADRMLDMGFEP 209
Query: 554 DVENIVDCLPRRRQSLLFSATMPKEL 579
+ IVD + RQ+L++SAT PKE+
Sbjct: 210 QIRKIVDQIRPDRQTLMWSATWPKEV 235
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 101/206 (49%), Gaps = 11/206 (5%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P+L+ F E + + + + T +Q L G D V A+TG+GK++++
Sbjct: 27 PVLN---FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 83
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
LLPAI + PI L+L PTRELA Q+ A + + + GG
Sbjct: 84 LLPAIVHINHQPFLERGD--GPI-CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGG 139
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
R LE +I +ATPGRL+D +E L LVLDEAD +LD+GF
Sbjct: 140 APKGPQIRDLERG-VEICIATPGRLIDFLECGK---TNLRRTTYLVLDEADRMLDMGFEP 195
Query: 554 DVENIVDCLPRRRQSLLFSATMPKEL 579
+ IVD + RQ+L++SAT PKE+
Sbjct: 196 QIRKIVDQIRPDRQTLMWSATWPKEV 221
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 24/205 (11%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ +S ++ L AAG+ + + VQ + G D +V+AK+GTGK+ F A+++
Sbjct: 26 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 85
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ S+ +LIL PTRE+A QI + A+ +G+ +GGT D+
Sbjct: 86 LVLENLSTQ--------ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDK 137
Query: 501 RRLESDPCQILVATPGRL-----LDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-FRKD 554
RL+ C I V +PGR+ LD++ S +++ +LDEAD LL+ G F++
Sbjct: 138 TRLKK--CHIAVGSPGRIKQLIELDYLNPGS--------IRLFILDEADKLLEEGSFQEQ 187
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+ I LP +Q L SAT P+ L
Sbjct: 188 INWIYSSLPASKQMLAVSATYPEFL 212
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 8/189 (4%)
Query: 388 PLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSS 447
P +K++ G ++ T +Q L+G D +V A+TGTGK++++L+P L +
Sbjct: 29 PDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIH-LDSQPI 87
Query: 448 STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
S Q P +L+L PTRELA + AE ++ G+ + + GG R + Q S
Sbjct: 88 SREQRNGP-GMLVLTPTRELALHVEAECSKY--SYKGLKSICIYGG-RNRNGQIEDISKG 143
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I++ATPGRL D N SV L + LV+DEAD +LD+ F + I+ + RQ
Sbjct: 144 VDIIIATPGRLNDLQMNN---SVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQ 200
Query: 568 SLLFSATMP 576
+++ SAT P
Sbjct: 201 TVMTSATWP 209
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 148/334 (44%), Gaps = 48/334 (14%)
Query: 404 RVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLIL 461
++QE L L ++ + ++++GTGK+ AF L + V + VP + L
Sbjct: 144 KIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS--------VPKPQAICL 195
Query: 462 CPTRELASQIAAEAIALLKNHDGIGVLTLVGG-TRFKVDQRRLESDP------CQILVAT 514
P+RELA QI + V+T +G T K +S P QI++ T
Sbjct: 196 APSRELARQI-------------MDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGT 242
Query: 515 PGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-GFRKDVENIVDCLPRRRQSLLFSA 573
PG ++D ++ + L R +K+ VLDEAD++LD G I LPR Q +LFSA
Sbjct: 243 PGTVMDLMKRRQ-LDAR--DIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSA 299
Query: 574 TMPK--ELVLKREHTYIDTVGLGSVETPVK-IKQSCLVAPHELH-FQILHHLLKEHILGT 629
T + E +R + + L + E V+ IKQ + E H + +L L +G
Sbjct: 300 TFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIG- 358
Query: 630 PDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 689
+ I+FC + + V + RD I + FR +LVT++
Sbjct: 359 ---QSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN 415
Query: 690 VSARGMDYPDVTSVVQVGIP------PDREQYIH 717
V ARG+D V VV +P PD + Y+H
Sbjct: 416 VIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLH 449
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 20/205 (9%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSI 431
P+ S K FDE G++P +K + A + + +++QE L L ++ + ++++GTGK+
Sbjct: 17 PLYSAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTA 76
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF L + V +S + L P+RELA Q E + + I +V
Sbjct: 77 AFSLTMLTRVNPEDASPQA--------ICLAPSRELARQ-TLEVVQEMGKFTKITSQLIV 127
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LG 550
+ K Q Q++V TPG +LD + K ++L +K+ VLDEAD++LD G
Sbjct: 128 PDSFEKNKQIN-----AQVIVGTPGTVLDLMRRK---LMQLQKIKIFVLDEADNMLDQQG 179
Query: 551 FRKDVENIVDCLPRRRQSLLFSATM 575
+ LP+ Q +LFSAT
Sbjct: 180 LGDQCIRVKRFLPKDTQLVLFSATF 204
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 17/205 (8%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLE--GKDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 79
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 80 AFVLAMLSQVEPANKYPQC--------LCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 131
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 132 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 185
Query: 551 FRKDVENIVDCLPRRRQSLLFSATM 575
+ I LPR Q LLFSAT
Sbjct: 186 HQDQSIRIQRMLPRNCQMLLFSATF 210
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 17/205 (8%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 87 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 146
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 147 AFVLAMLSQVEPANKYPQC--------LCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 198
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 199 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 252
Query: 551 FRKDVENIVDCLPRRRQSLLFSATM 575
+ I LPR Q LLFSAT
Sbjct: 253 HQDQSIRIQRMLPRNCQMLLFSATF 277
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 26/213 (12%)
Query: 374 PILSQKRFD-ECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
PI + ++ D E I+ ++ + AG+ T +Q + L G++ + A TG+GK++A
Sbjct: 23 PIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82
Query: 433 FLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVL---- 488
F +P + + + + LI+ PTRELASQI E L+K +G G
Sbjct: 83 FSIPILMQLKQPANKG-------FRALIISPTRELASQIHRE---LIKISEGTGFRIHMI 132
Query: 489 --TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL 546
V +F S ILV TP RL+ ++ + + L ++ LV+DE+D L
Sbjct: 133 HKAAVAAKKFGPK----SSKKFDILVTTPNRLI-YLLKQDPPGIDLASVEWLVVDESDKL 187
Query: 547 LD---LGFRKDVENI-VDCLPRRRQSLLFSATM 575
+ GFR + +I + C + + +FSAT
Sbjct: 188 FEDGKTGFRDQLASIFLACTSHKVRRAMFSATF 220
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 633 KVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 692
+ ++FC+T L LR K V +YS PQ RD I +EFR+ IL+++D+ A
Sbjct: 32 QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA 91
Query: 693 RGMDYPDVTSVVQVGIPPDREQYIH 717
RG+D V+ V+ +P ++E YIH
Sbjct: 92 RGIDVQQVSLVINYDLPANKENYIH 116
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 615 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR-EMK--MNVREMYSRKPQLYRD 671
F + H+ K+ +YK I+F T TS L +L+ E K + + E + + Q R
Sbjct: 17 FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 76
Query: 672 RISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
+ + F+ + ILV +DV ARGMD+P+V V+Q+G+P + YIH
Sbjct: 77 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 122
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 615 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR-EMK--MNVREMYSRKPQLYRD 671
F + H+ K+ +YK I+F T TS L +L+ E K + + E + + Q R
Sbjct: 17 FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 76
Query: 672 RISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
+ + F+ + ILV +DV ARGMD+P+V V+Q+G+P + YIH
Sbjct: 77 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 122
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 615 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR-EMK--MNVREMYSRKPQLYRD 671
F + H+ K+ +YK I+F T TS L +L+ E K + + E + + Q R
Sbjct: 17 FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 76
Query: 672 RISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
+ + F+ + ILV +DV ARGMD+P+V V+Q+G+P + YIH
Sbjct: 77 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 122
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 4/143 (2%)
Query: 597 ETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKM 656
+ PV ++ + AP ++L LL + +PD + +VF T T + L +
Sbjct: 1 DEPVTYEEEAVPAPVRGRLEVLSDLL---YVASPD-RAMVFTRTKAETEEIAQGLLRLGH 56
Query: 657 NVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYI 716
+ ++ Q R+R+ FR + +LV +DV+ARG+D P V VV +P E Y
Sbjct: 57 PAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQ 116
Query: 717 HXXXXXXXXXXXXXXVLLLAPWE 739
H VLL P E
Sbjct: 117 HRSGRTGRAGRGGRVVLLYGPRE 139
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 4/140 (2%)
Query: 600 VKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVR 659
V ++ + AP ++L LL + +PD + +VF T T + L + +
Sbjct: 1 VTYEEEAVPAPVRGRLEVLSDLL---YVASPD-RAMVFTRTKAETEEIAQGLLRLGHPAQ 56
Query: 660 EMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHXX 719
++ Q R+R+ FR + +LV +DV+ARG+D P V VV +P E Y H
Sbjct: 57 ALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRS 116
Query: 720 XXXXXXXXXXXXVLLLAPWE 739
VLL P E
Sbjct: 117 GRTGRAGRGGRVVLLYGPRE 136
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 602 IKQSCLVAPHELH-FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVRE 660
IKQ + +E F +L L +G+ I+F +T ++LY L+ V
Sbjct: 9 IKQLYMDCKNEADKFDVLTELYGLMTIGSS----IIFVATKKTANVLYGKLKSEGHEVSI 64
Query: 661 MYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------PDREQ 714
++ RDR+ ++FR + +L+T++V ARG+D P V+ VV +P D
Sbjct: 65 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPAT 124
Query: 715 YIH 717
YIH
Sbjct: 125 YIH 127
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 648 YLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVG 707
YLLL+ + ++ K Q R + E FR K+ +LV +DV+++G+D+P + V+
Sbjct: 73 YLLLK--GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYD 130
Query: 708 IPPDREQYIH 717
+P + E Y+H
Sbjct: 131 MPEEIENYVH 140
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 615 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRIS 674
F +L L +G+ I+F +T ++LY L+ V ++ RDR+
Sbjct: 24 FDVLTELYGVXTIGSS----IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLI 79
Query: 675 EEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------PDREQYIH 717
++FR + +L+T++V ARG+D P V+ VV +P D YIH
Sbjct: 80 DDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIH 128
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 615 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRIS 674
F +L L +G+ I+F +T ++LY L+ V ++ RDR+
Sbjct: 25 FDVLTELYGLXTIGSS----IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLI 80
Query: 675 EEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------PDREQYIH 717
++FR + +L+T++V ARG+D P V+ VV +P D YIH
Sbjct: 81 DDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIH 129
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%)
Query: 631 DYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 690
D +VF T L L ++ + Q R+ +FR+ K ILV + V
Sbjct: 46 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV 105
Query: 691 SARGMDYPDVTSVVQVGIPPDREQYIH 717
+ARG+D +V V+ +P D E+Y+H
Sbjct: 106 AARGLDISNVKHVINFDLPSDIEEYVH 132
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 598 TPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMN 657
T I+ + + E F +L +L + PD I+FC T + L L ++
Sbjct: 6 TTRNIEHAVIQVREENKFSLLKDVL---MTENPD-SCIIFCRTKEHVNQLTDELDDLGYP 61
Query: 658 VREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
+++ Q R + EF+ + LV +DV+ARG+D +++ V+ +P ++E Y+H
Sbjct: 62 CDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVH 121
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 633 KVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 692
+ I+FC T L + + + V + R I + FR K +L+T++V A
Sbjct: 36 QAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCA 95
Query: 693 RGMDYPDVTSVVQVGIP------PDREQYIH 717
RG+D VT VV +P PD E Y+H
Sbjct: 96 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLH 126
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 635 IVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARG 694
I+FC++ LL + ++ + ++++ Q +R+R+ +FR LV +D+ RG
Sbjct: 48 IIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRG 107
Query: 695 MDYPDVTSVVQVGIPPDREQYIH 717
+D V V+ P E Y+H
Sbjct: 108 IDIQAVNVVINFDFPKLAETYLH 130
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 625 HILGTPD-YKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRL 683
H+L P+ + IVF L LRE +N + Q R+ + +
Sbjct: 23 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82
Query: 684 ILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 717
+LV +DV+ARG+D PDV+ V +P + Y+H
Sbjct: 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLH 116
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 398 GYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456
G+ + R+Q A LE ++ ++ A TG GK+ L+ + + K + T V
Sbjct: 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDF 135
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
++ + P R L ++ L + GI V L G + + E QI+V TP
Sbjct: 136 KIIYIAPMRSLVQEMVGSFGKRLATY-GITVAELTGDHQLCKE----EISATQIIVCTPE 190
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547
+ D I K G +++++LDE HLL
Sbjct: 191 K-WDIITRKGGERTYTQLVRLIILDEI-HLL 219
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 398 GYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456
G+ + R+Q A LE ++ ++ A TG GK+ L+ + + K + T V
Sbjct: 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDF 135
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
++ + P R L ++ L + GI V L G + + E QI+V TP
Sbjct: 136 KIIYIAPMRSLVQEMVGSFGKRLATY-GITVAELTGDHQLCKE----EISATQIIVCTPE 190
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547
+ D I K G +++++LDE HLL
Sbjct: 191 K-WDIITRKGGERTYTQLVRLIILDEI-HLL 219
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 633 KVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 692
+V++F + L LL E ++ PQ R ++F+ +R ILV +++
Sbjct: 33 QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFG 92
Query: 693 RGMDYPDVTSVVQVGIPPDREQYIH 717
RGMD V +P D + Y+H
Sbjct: 93 RGMDIERVNIAFNYDMPEDSDTYLH 117
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 45/331 (13%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457
GY Q QE + L G+D +V TG GKS+ + +PA+ + T +V P+
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPAL------LLNGLTVVVSPLI 75
Query: 458 VLILCPTREL-ASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
L+ +L A+ +AA + + + L ++ G R + ++L P
Sbjct: 76 SLMKDQVDQLQANGVAAACLNSTQTRE--QQLEVMTGCR---------TGQIRLLYIAPE 124
Query: 517 RL-----LDHIENKSGLSVRLMGLKMLVLDEADHLLDLG--FRKDVENIVDCLPRRRQSL 569
RL L+H+ + + + +L +DEA + G FR + + L +R +L
Sbjct: 125 RLMLDNFLEHLAHWNPV--------LLAVDEAHCISQWGHDFRPEYAALGQ-LRQRFPTL 175
Query: 570 LFSATMPKELVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELH-----FQILHHLLKE 624
F A + T D V L + P+ I+ S P+ + F+ L L++
Sbjct: 176 PFMALTAT----ADDTTRQDIVRLLGLNDPL-IQISSFDRPNIRYMLMEKFKPLDQLMR- 229
Query: 625 HILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLI 684
++ I++C++ L+ ++ ++ R + E+F+ I
Sbjct: 230 YVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQI 289
Query: 685 LVTSDVSARGMDYPDVTSVVQVGIPPDREQY 715
+V + G++ P+V VV IP + E Y
Sbjct: 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESY 320
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
GY Q QE + L G+D +V TG GKS+ + +PA+
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPAL 62
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 12/150 (8%)
Query: 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459
+Q+ Q LEGK+ ++ TG GK+ + A + + K +S P V+
Sbjct: 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKAS-----EPGKVI 60
Query: 460 ILCPTRELASQI-AAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL 518
+L L Q+ E LK V+ L G T+ K+ + C I+++T L
Sbjct: 61 VLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEV-VKSCDIIISTAQIL 117
Query: 519 ---LDHIENKSGLSVRLMGLKMLVLDEADH 545
L ++EN V+L ++++DE H
Sbjct: 118 ENSLLNLENGEDAGVQLSDFSLIIIDECHH 147
>pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5
(Melanoma Differentiation-Associated Protein 5),
Dech-Domain
Length = 216
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 12/150 (8%)
Query: 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459
+Q+ Q LEGK+ ++ TG+GK+ + A + + K +S P V+
Sbjct: 32 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASE-----PGKVI 86
Query: 460 ILCPTRELASQI-AAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL 518
+L L Q+ E LK V+ L G T+ K+ + C I+++T L
Sbjct: 87 VLVNKVLLVEQLFRKEFQPFLKKW--YRVIGLSGDTQLKISFPEVVKS-CDIIISTAQIL 143
Query: 519 ---LDHIENKSGLSVRLMGLKMLVLDEADH 545
L ++EN V+L ++++DE H
Sbjct: 144 ENSLLNLENGEDAGVQLSDFSLIIIDECHH 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,974,033
Number of Sequences: 62578
Number of extensions: 768010
Number of successful extensions: 1931
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1661
Number of HSP's gapped (non-prelim): 89
length of query: 842
length of database: 14,973,337
effective HSP length: 107
effective length of query: 735
effective length of database: 8,277,491
effective search space: 6083955885
effective search space used: 6083955885
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)