Query 003178
Match_columns 842
No_of_seqs 542 out of 3863
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 18:32:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0342 ATP-dependent RNA heli 100.0 2.2E-83 4.8E-88 693.6 29.8 458 373-841 76-542 (543)
2 KOG0343 RNA Helicase [RNA proc 100.0 2E-72 4.2E-77 611.7 22.4 431 377-822 67-511 (758)
3 KOG0345 ATP-dependent RNA heli 100.0 4.8E-72 1E-76 601.2 22.3 451 378-839 3-471 (567)
4 KOG0348 ATP-dependent RNA heli 100.0 1.4E-68 3E-73 580.3 22.3 449 369-822 126-663 (708)
5 KOG0330 ATP-dependent RNA heli 100.0 8.3E-69 1.8E-73 565.0 17.4 362 377-754 59-423 (476)
6 KOG0331 ATP-dependent RNA heli 100.0 5.5E-67 1.2E-71 585.8 20.5 360 380-747 92-457 (519)
7 KOG0338 ATP-dependent RNA heli 100.0 4.3E-65 9.3E-70 550.3 22.3 357 378-747 180-542 (691)
8 COG0513 SrmB Superfamily II DN 100.0 5.4E-63 1.2E-67 574.0 18.3 356 379-748 29-391 (513)
9 KOG0340 ATP-dependent RNA heli 100.0 1.7E-61 3.8E-66 504.3 18.1 361 377-748 5-371 (442)
10 KOG0336 ATP-dependent RNA heli 100.0 6.9E-60 1.5E-64 497.8 19.0 390 342-746 185-580 (629)
11 KOG0333 U5 snRNP-like RNA heli 100.0 7.1E-60 1.5E-64 512.0 16.4 355 378-743 244-629 (673)
12 KOG0328 Predicted ATP-dependen 100.0 1.4E-59 3.1E-64 476.1 16.5 359 373-748 21-383 (400)
13 KOG0347 RNA helicase [RNA proc 100.0 2.2E-60 4.8E-65 517.8 10.5 360 378-746 180-578 (731)
14 KOG0326 ATP-dependent RNA heli 100.0 1.6E-58 3.5E-63 475.1 14.8 353 379-748 85-439 (459)
15 PTZ00110 helicase; Provisional 100.0 4.8E-58 1E-62 537.2 19.7 359 377-746 128-492 (545)
16 PRK11634 ATP-dependent RNA hel 100.0 1.1E-57 2.3E-62 539.3 22.5 362 379-758 6-375 (629)
17 PRK04837 ATP-dependent RNA hel 100.0 7.9E-58 1.7E-62 522.6 18.2 359 377-747 6-371 (423)
18 KOG0335 ATP-dependent RNA heli 100.0 1.4E-57 3E-62 502.0 17.5 353 380-739 75-445 (482)
19 PRK11776 ATP-dependent RNA hel 100.0 4.5E-57 9.8E-62 521.8 18.0 351 379-748 4-359 (460)
20 KOG0341 DEAD-box protein abstr 100.0 9.9E-58 2.1E-62 478.6 9.5 363 377-748 168-539 (610)
21 PRK10590 ATP-dependent RNA hel 100.0 1.3E-56 2.8E-61 516.7 18.7 356 380-748 2-362 (456)
22 PRK04537 ATP-dependent RNA hel 100.0 2.5E-56 5.5E-61 524.6 19.0 358 379-747 9-373 (572)
23 KOG0346 RNA helicase [RNA proc 100.0 4.6E-56 9.9E-61 473.9 17.2 355 379-741 19-413 (569)
24 KOG0334 RNA helicase [RNA proc 100.0 1E-55 2.2E-60 516.2 21.4 362 377-746 363-728 (997)
25 PLN00206 DEAD-box ATP-dependen 100.0 1.4E-55 3E-60 514.7 21.4 358 377-745 119-482 (518)
26 PRK11192 ATP-dependent RNA hel 100.0 1.1E-54 2.5E-59 498.4 19.3 353 380-747 2-361 (434)
27 PRK01297 ATP-dependent RNA hel 100.0 1.9E-54 4.2E-59 501.6 19.5 360 378-748 86-452 (475)
28 KOG0339 ATP-dependent RNA heli 100.0 7.9E-55 1.7E-59 469.9 14.9 361 374-745 218-582 (731)
29 PTZ00424 helicase 45; Provisio 100.0 1.1E-51 2.4E-56 468.8 14.8 352 378-748 27-384 (401)
30 KOG0350 DEAD-box ATP-dependent 100.0 7.2E-51 1.6E-55 440.2 20.2 356 380-749 128-552 (620)
31 KOG0337 ATP-dependent RNA heli 100.0 2.3E-51 5E-56 436.3 10.7 356 379-749 21-379 (529)
32 KOG0332 ATP-dependent RNA heli 100.0 3.9E-50 8.5E-55 421.4 15.4 351 370-739 81-444 (477)
33 TIGR03817 DECH_helic helicase/ 100.0 6.6E-50 1.4E-54 481.5 19.4 341 385-747 20-397 (742)
34 KOG0327 Translation initiation 100.0 7.2E-50 1.6E-54 423.8 11.4 350 379-748 26-380 (397)
35 KOG4284 DEAD box protein [Tran 100.0 2.6E-49 5.6E-54 436.5 13.2 344 378-740 24-381 (980)
36 PLN03137 ATP-dependent DNA hel 100.0 1.8E-47 3.9E-52 457.6 16.2 342 380-745 436-794 (1195)
37 KOG0344 ATP-dependent RNA heli 100.0 6.5E-47 1.4E-51 419.3 16.4 360 379-748 132-505 (593)
38 TIGR00614 recQ_fam ATP-depende 100.0 3.8E-46 8.3E-51 431.1 14.5 322 396-746 6-341 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 6.2E-45 1.3E-49 432.1 16.5 327 387-746 10-351 (607)
40 TIGR01389 recQ ATP-dependent D 100.0 3.6E-44 7.8E-49 426.1 14.4 325 393-746 4-339 (591)
41 PRK02362 ski2-like helicase; P 100.0 2.4E-43 5.3E-48 428.1 19.3 330 380-738 2-397 (737)
42 PRK13767 ATP-dependent helicas 100.0 1.7E-42 3.6E-47 425.1 23.2 344 386-737 18-397 (876)
43 PRK00254 ski2-like helicase; P 100.0 1E-41 2.2E-46 412.9 23.6 336 380-739 2-389 (720)
44 KOG0329 ATP-dependent RNA heli 100.0 2.4E-41 5.2E-46 339.0 10.5 319 378-747 41-365 (387)
45 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.3E-40 5E-45 392.2 18.4 319 397-737 12-390 (844)
46 PRK01172 ski2-like helicase; P 100.0 7E-40 1.5E-44 395.0 21.0 333 380-739 2-379 (674)
47 TIGR00580 mfd transcription-re 100.0 9.9E-40 2.2E-44 397.1 18.6 316 386-737 436-769 (926)
48 COG0514 RecQ Superfamily II DN 100.0 7.4E-40 1.6E-44 373.8 15.0 315 397-745 13-344 (590)
49 COG1201 Lhr Lhr-like helicases 100.0 9.8E-39 2.1E-43 376.5 20.7 339 386-739 8-363 (814)
50 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6.4E-39 1.4E-43 386.4 18.7 308 406-742 7-340 (819)
51 TIGR00643 recG ATP-dependent D 100.0 8.8E-39 1.9E-43 381.1 17.6 317 390-736 225-564 (630)
52 PRK10917 ATP-dependent DNA hel 100.0 1.6E-38 3.6E-43 381.2 17.6 310 395-736 256-587 (681)
53 PHA02653 RNA helicase NPH-II; 100.0 4.7E-38 1E-42 370.9 20.1 309 404-740 167-516 (675)
54 PRK11664 ATP-dependent RNA hel 100.0 2.3E-38 5E-43 382.4 16.5 305 407-740 11-341 (812)
55 PRK10689 transcription-repair 100.0 2.5E-38 5.3E-43 392.4 17.1 311 391-737 591-918 (1147)
56 PRK09751 putative ATP-dependen 100.0 7.5E-38 1.6E-42 389.6 20.7 308 421-735 1-382 (1490)
57 PRK09401 reverse gyrase; Revie 100.0 9E-38 1.9E-42 388.2 14.2 296 397-724 77-430 (1176)
58 PRK14701 reverse gyrase; Provi 100.0 7.5E-37 1.6E-41 387.0 13.4 323 390-742 68-460 (1638)
59 COG1202 Superfamily II helicas 100.0 2.9E-35 6.2E-40 322.9 17.8 342 379-738 194-553 (830)
60 TIGR01587 cas3_core CRISPR-ass 100.0 2E-35 4.2E-40 330.8 14.2 291 418-728 1-322 (358)
61 KOG0349 Putative DEAD-box RNA 100.0 8.9E-35 1.9E-39 309.2 15.1 273 456-738 287-615 (725)
62 PRK12898 secA preprotein trans 100.0 1.1E-34 2.4E-39 337.4 17.2 319 401-740 103-588 (656)
63 PHA02558 uvsW UvsW helicase; P 100.0 3.1E-34 6.6E-39 334.0 16.7 306 399-735 112-449 (501)
64 COG1205 Distinct helicase fami 100.0 2.9E-34 6.2E-39 347.4 15.5 346 387-745 56-431 (851)
65 KOG0351 ATP-dependent DNA heli 100.0 5.7E-34 1.2E-38 342.5 17.3 372 394-793 257-644 (941)
66 COG1204 Superfamily II helicas 100.0 1.5E-33 3.3E-38 336.8 19.9 330 386-737 16-407 (766)
67 TIGR01054 rgy reverse gyrase. 100.0 3.9E-34 8.4E-39 356.3 14.9 289 391-710 68-409 (1171)
68 PRK09200 preprotein translocas 100.0 1E-33 2.2E-38 335.8 17.5 323 397-740 75-543 (790)
69 KOG0352 ATP-dependent DNA heli 100.0 2.4E-33 5.2E-38 298.5 18.3 333 389-746 6-370 (641)
70 PRK11131 ATP-dependent RNA hel 100.0 4E-33 8.6E-38 342.0 17.9 299 406-739 79-412 (1294)
71 TIGR03714 secA2 accessory Sec 100.0 4.3E-33 9.2E-38 327.6 17.0 321 402-740 69-539 (762)
72 KOG0947 Cytoplasmic exosomal R 100.0 1.6E-31 3.5E-36 306.8 21.4 306 398-736 295-721 (1248)
73 PRK13766 Hef nuclease; Provisi 100.0 3.6E-32 7.8E-37 333.5 17.0 322 398-737 12-478 (773)
74 COG1111 MPH1 ERCC4-like helica 100.0 7.6E-32 1.7E-36 295.5 17.6 322 399-738 13-481 (542)
75 TIGR00963 secA preprotein tran 100.0 5.6E-32 1.2E-36 316.3 17.4 319 401-740 56-519 (745)
76 TIGR03158 cas3_cyano CRISPR-as 100.0 2.9E-32 6.2E-37 304.4 14.3 295 405-723 1-357 (357)
77 TIGR01967 DEAH_box_HrpA ATP-de 100.0 9.1E-32 2E-36 331.3 18.6 300 408-739 74-405 (1283)
78 KOG0952 DNA/RNA helicase MER3/ 100.0 1.1E-31 2.5E-36 311.6 18.2 341 396-746 105-500 (1230)
79 KOG0353 ATP-dependent DNA heli 100.0 4.6E-30 9.9E-35 269.5 13.8 337 382-740 74-469 (695)
80 KOG0354 DEAD-box like helicase 100.0 3.1E-29 6.7E-34 289.6 20.1 325 397-739 58-530 (746)
81 PRK05580 primosome assembly pr 100.0 1.2E-29 2.6E-34 303.8 16.5 316 401-743 144-554 (679)
82 TIGR00603 rad25 DNA repair hel 100.0 2.6E-29 5.7E-34 295.7 18.2 305 400-737 254-606 (732)
83 KOG0951 RNA helicase BRR2, DEA 100.0 1.3E-28 2.9E-33 288.7 16.4 360 385-753 295-719 (1674)
84 KOG0926 DEAH-box RNA helicase 100.0 5.7E-28 1.2E-32 273.1 16.0 310 407-737 262-703 (1172)
85 KOG0923 mRNA splicing factor A 99.9 4E-27 8.8E-32 262.4 20.0 323 399-750 263-616 (902)
86 KOG0948 Nuclear exosomal RNA h 99.9 1.7E-28 3.7E-33 276.1 8.7 305 401-737 129-538 (1041)
87 KOG0922 DEAH-box RNA helicase 99.9 3.4E-27 7.4E-32 266.5 18.5 308 406-739 56-391 (674)
88 TIGR00595 priA primosomal prot 99.9 3E-27 6.5E-32 274.0 14.4 291 420-737 1-380 (505)
89 COG1643 HrpA HrpA-like helicas 99.9 6E-27 1.3E-31 279.0 16.6 307 405-739 54-388 (845)
90 PRK09694 helicase Cas3; Provis 99.9 8.3E-27 1.8E-31 281.7 17.0 311 399-727 284-664 (878)
91 COG4581 Superfamily II RNA hel 99.9 1.5E-26 3.2E-31 276.9 16.3 319 396-738 115-537 (1041)
92 PRK04914 ATP-dependent helicas 99.9 4.7E-26 1E-30 276.7 20.9 317 401-738 152-603 (956)
93 COG1200 RecG RecG-like helicas 99.9 5.2E-26 1.1E-30 259.6 15.5 322 387-739 248-592 (677)
94 PRK13104 secA preprotein trans 99.9 9.5E-26 2.1E-30 267.4 15.7 318 402-740 83-589 (896)
95 PRK12899 secA preprotein trans 99.9 2.6E-25 5.7E-30 263.0 17.9 150 382-547 65-228 (970)
96 cd00268 DEADc DEAD-box helicas 99.9 3.4E-26 7.4E-31 235.3 8.9 188 381-579 1-188 (203)
97 COG1061 SSL2 DNA or RNA helica 99.9 1.8E-25 3.9E-30 256.0 14.6 289 400-725 35-376 (442)
98 PRK12906 secA preprotein trans 99.9 3.6E-25 7.9E-30 261.4 15.2 319 401-740 80-555 (796)
99 PRK12904 preprotein translocas 99.9 6.3E-25 1.4E-29 260.3 17.1 319 401-740 81-575 (830)
100 KOG0924 mRNA splicing factor A 99.9 6.7E-25 1.4E-29 244.9 14.2 315 398-737 353-696 (1042)
101 COG1197 Mfd Transcription-repa 99.9 1.5E-23 3.2E-28 251.3 17.8 319 387-737 580-912 (1139)
102 COG4098 comFA Superfamily II D 99.9 9.6E-23 2.1E-27 213.7 20.5 297 401-734 97-412 (441)
103 PRK11448 hsdR type I restricti 99.9 3.1E-23 6.8E-28 257.4 18.7 310 401-727 413-802 (1123)
104 PRK13107 preprotein translocas 99.9 7E-23 1.5E-27 242.3 15.0 319 401-740 82-593 (908)
105 KOG0920 ATP-dependent RNA heli 99.9 5.4E-23 1.2E-27 244.2 13.3 319 401-739 173-545 (924)
106 KOG0950 DNA polymerase theta/e 99.9 6.9E-23 1.5E-27 238.4 13.0 334 390-746 212-619 (1008)
107 PF00270 DEAD: DEAD/DEAH box h 99.9 1.5E-23 3.2E-28 208.6 4.6 163 403-578 1-165 (169)
108 PLN03142 Probable chromatin-re 99.9 1.5E-21 3.1E-26 238.5 15.1 311 401-733 169-592 (1033)
109 TIGR00631 uvrb excinuclease AB 99.8 3.2E-20 6.9E-25 220.5 19.0 131 612-745 425-560 (655)
110 KOG0925 mRNA splicing factor A 99.8 1.1E-20 2.3E-25 205.3 13.4 327 378-737 24-386 (699)
111 COG1203 CRISPR-associated heli 99.8 1.6E-20 3.4E-25 227.4 10.9 323 402-738 196-550 (733)
112 PRK12900 secA preprotein trans 99.8 6.2E-20 1.4E-24 218.1 15.2 126 611-740 580-713 (1025)
113 TIGR01407 dinG_rel DnaQ family 99.8 7.6E-20 1.7E-24 225.6 14.2 121 615-737 659-813 (850)
114 KOG0949 Predicted helicase, DE 99.8 2E-18 4.4E-23 199.9 15.5 164 401-578 511-674 (1330)
115 KOG2340 Uncharacterized conser 99.8 4.6E-18 1E-22 186.7 16.3 343 398-740 213-670 (698)
116 KOG4150 Predicted ATP-dependen 99.8 1.2E-18 2.6E-23 191.6 10.7 344 390-746 275-650 (1034)
117 COG1198 PriA Primosomal protei 99.8 2.2E-18 4.7E-23 203.4 13.4 312 400-741 197-606 (730)
118 KOG1123 RNA polymerase II tran 99.7 2.7E-18 5.9E-23 187.0 10.4 321 371-726 274-635 (776)
119 COG4096 HsdR Type I site-speci 99.7 7.5E-18 1.6E-22 195.2 14.1 298 400-725 164-525 (875)
120 KOG0387 Transcription-coupled 99.7 5.3E-17 1.1E-21 185.9 20.2 316 400-737 204-657 (923)
121 COG1110 Reverse gyrase [DNA re 99.7 8.7E-18 1.9E-22 197.0 12.7 281 398-710 80-417 (1187)
122 COG0556 UvrB Helicase subunit 99.7 5.2E-17 1.1E-21 179.4 17.3 165 565-737 386-556 (663)
123 PRK12326 preprotein translocas 99.7 1.4E-16 3E-21 185.3 19.9 318 401-740 78-549 (764)
124 KOG0385 Chromatin remodeling c 99.7 3.2E-17 6.8E-22 186.8 13.3 315 401-737 167-598 (971)
125 PRK05298 excinuclease ABC subu 99.7 5.1E-17 1.1E-21 194.4 13.9 123 613-738 430-557 (652)
126 PF06862 DUF1253: Protein of u 99.7 1.9E-16 4.1E-21 177.5 17.4 299 448-746 30-423 (442)
127 PRK07246 bifunctional ATP-depe 99.7 4.8E-17 1E-21 198.6 13.3 119 614-737 632-782 (820)
128 TIGR00348 hsdR type I site-spe 99.7 1.5E-16 3.3E-21 191.0 15.4 301 402-725 239-634 (667)
129 KOG0953 Mitochondrial RNA heli 99.7 2.1E-16 4.6E-21 174.9 14.6 288 416-755 191-493 (700)
130 PRK13103 secA preprotein trans 99.7 6.8E-16 1.5E-20 183.6 17.1 318 401-740 82-593 (913)
131 smart00487 DEXDc DEAD-like hel 99.7 6.6E-17 1.4E-21 163.0 7.2 171 396-579 3-174 (201)
132 cd00079 HELICc Helicase superf 99.6 2.7E-16 5.8E-21 149.1 8.1 120 613-734 12-131 (131)
133 PRK12903 secA preprotein trans 99.6 4.4E-15 9.6E-20 174.9 16.3 318 401-740 78-541 (925)
134 PRK08074 bifunctional ATP-depe 99.6 5.2E-15 1.1E-19 183.8 15.8 122 615-737 737-892 (928)
135 PF00271 Helicase_C: Helicase 99.6 6.8E-16 1.5E-20 134.0 4.0 78 649-726 1-78 (78)
136 KOG0384 Chromodomain-helicase 99.6 1.1E-14 2.4E-19 173.5 13.9 337 379-744 354-819 (1373)
137 CHL00122 secA preprotein trans 99.6 2.9E-14 6.4E-19 169.1 16.3 129 402-547 77-209 (870)
138 COG4889 Predicted helicase [Ge 99.5 7.3E-15 1.6E-19 168.6 8.5 334 381-735 142-583 (1518)
139 KOG0951 RNA helicase BRR2, DEA 99.5 5.9E-14 1.3E-18 166.8 14.5 311 401-745 1143-1501(1674)
140 KOG0390 DNA repair protein, SN 99.5 1.5E-13 3.3E-18 161.8 16.1 318 401-733 238-700 (776)
141 TIGR03117 cas_csf4 CRISPR-asso 99.5 2.1E-13 4.6E-18 160.3 17.1 88 618-709 458-560 (636)
142 PRK12902 secA preprotein trans 99.5 3.9E-13 8.6E-18 159.3 17.3 129 401-547 85-218 (939)
143 cd00046 DEXDc DEAD-like helica 99.5 7.5E-14 1.6E-18 132.4 7.6 144 417-575 1-144 (144)
144 KOG0392 SNF2 family DNA-depend 99.4 1.9E-13 4.2E-18 162.3 10.4 322 401-737 975-1453(1549)
145 COG1199 DinG Rad3-related DNA 99.4 8.9E-13 1.9E-17 159.5 14.2 121 613-736 462-615 (654)
146 KOG0389 SNF2 family DNA-depend 99.4 2.9E-13 6.2E-18 155.5 9.1 122 614-737 762-887 (941)
147 PRK11747 dinG ATP-dependent DN 99.4 1.9E-12 4.2E-17 156.4 16.2 118 614-737 519-673 (697)
148 KOG1000 Chromatin remodeling p 99.4 9.1E-13 2E-17 144.5 11.6 308 400-732 197-595 (689)
149 smart00490 HELICc helicase sup 99.4 1.7E-13 3.7E-18 118.7 4.4 81 646-726 2-82 (82)
150 PF04851 ResIII: Type III rest 99.4 1.9E-13 4.1E-18 137.3 4.6 157 401-576 3-183 (184)
151 TIGR00604 rad3 DNA repair heli 99.3 2E-11 4.3E-16 148.5 17.4 122 614-736 506-672 (705)
152 PRK12901 secA preprotein trans 99.3 3E-11 6.6E-16 144.8 16.2 125 611-740 610-743 (1112)
153 KOG1002 Nucleotide excision re 99.3 2.2E-11 4.7E-16 133.5 10.9 108 630-737 637-748 (791)
154 PRK14873 primosome assembly pr 99.2 8.5E-12 1.8E-16 148.6 7.6 133 423-579 167-307 (665)
155 TIGR02562 cas3_yersinia CRISPR 99.2 4E-11 8.7E-16 144.4 10.7 90 635-727 760-881 (1110)
156 KOG0386 Chromatin remodeling c 99.2 3.1E-11 6.7E-16 142.1 6.5 315 401-736 394-834 (1157)
157 KOG0391 SNF2 family DNA-depend 99.1 3E-10 6.5E-15 134.3 14.0 121 615-737 1262-1386(1958)
158 KOG0388 SNF2 family DNA-depend 99.1 4.4E-10 9.5E-15 127.6 11.2 121 614-736 1029-1152(1185)
159 KOG0921 Dosage compensation co 99.1 2.2E-10 4.9E-15 133.0 8.3 310 409-737 386-773 (1282)
160 PF02399 Herpes_ori_bp: Origin 99.0 6.1E-09 1.3E-13 123.1 14.4 284 417-738 50-388 (824)
161 KOG4439 RNA polymerase II tran 99.0 8E-09 1.7E-13 118.1 14.7 104 630-733 745-851 (901)
162 PF07652 Flavi_DEAD: Flaviviru 98.8 1.7E-09 3.6E-14 103.5 3.3 135 415-578 3-139 (148)
163 PF00176 SNF2_N: SNF2 family N 98.8 1.3E-08 2.7E-13 110.7 8.9 146 416-578 25-175 (299)
164 KOG1015 Transcription regulato 98.8 2E-08 4.3E-13 117.4 10.2 118 614-733 1127-1270(1567)
165 smart00489 DEXDc3 DEAD-like he 98.7 1.3E-08 2.8E-13 110.8 6.2 75 398-478 6-84 (289)
166 smart00488 DEXDc2 DEAD-like he 98.7 1.3E-08 2.8E-13 110.8 6.2 75 398-478 6-84 (289)
167 COG0653 SecA Preprotein transl 98.6 1.3E-07 2.7E-12 112.9 9.8 317 404-739 81-546 (822)
168 COG0610 Type I site-specific r 98.5 1.9E-06 4.2E-11 107.6 18.1 289 417-726 274-637 (962)
169 KOG0952 DNA/RNA helicase MER3/ 98.4 1.9E-07 4E-12 111.4 4.4 161 401-577 927-1095(1230)
170 PF07517 SecA_DEAD: SecA DEAD- 98.3 3.4E-07 7.3E-12 97.7 3.4 131 400-547 76-210 (266)
171 PRK15483 type III restriction- 98.2 2.2E-06 4.7E-11 104.6 7.5 67 681-747 501-577 (986)
172 COG3587 Restriction endonuclea 98.0 8.1E-05 1.8E-09 88.1 15.4 67 681-747 483-562 (985)
173 PF13086 AAA_11: AAA domain; P 97.9 1.8E-05 3.9E-10 82.3 7.1 74 401-477 1-75 (236)
174 KOG1016 Predicted DNA helicase 97.8 0.00029 6.3E-09 82.0 15.3 105 631-735 719-844 (1387)
175 PF13307 Helicase_C_2: Helicas 97.8 2E-05 4.3E-10 78.9 4.9 106 630-737 8-149 (167)
176 PF02562 PhoH: PhoH-like prote 97.7 4.1E-05 9E-10 78.8 4.9 60 399-467 2-61 (205)
177 PF13604 AAA_30: AAA domain; P 97.6 5.7E-05 1.2E-09 77.7 5.2 63 401-474 1-65 (196)
178 COG0553 HepA Superfamily II DN 97.5 0.00017 3.7E-09 90.3 8.3 119 613-733 692-815 (866)
179 PF12340 DUF3638: Protein of u 97.5 0.00013 2.7E-09 75.9 5.2 108 401-520 23-143 (229)
180 KOG1802 RNA helicase nonsense 97.3 0.0005 1.1E-08 79.4 8.0 76 393-478 402-477 (935)
181 KOG1803 DNA helicase [Replicat 97.2 0.00034 7.3E-09 80.5 5.4 65 401-476 185-250 (649)
182 PF13872 AAA_34: P-loop contai 97.1 0.001 2.2E-08 71.7 7.2 159 402-578 38-223 (303)
183 PF09848 DUF2075: Uncharacteri 97.1 0.00044 9.6E-09 77.7 4.6 96 418-549 3-98 (352)
184 PRK10536 hypothetical protein; 97.1 0.00077 1.7E-08 71.5 5.5 64 395-467 53-116 (262)
185 PF13245 AAA_19: Part of AAA d 97.0 0.0011 2.4E-08 57.3 5.3 60 409-475 2-62 (76)
186 PRK10875 recD exonuclease V su 97.0 0.0011 2.5E-08 79.1 7.0 143 403-572 154-299 (615)
187 TIGR01447 recD exodeoxyribonuc 96.9 0.002 4.3E-08 76.9 7.5 142 404-571 148-292 (586)
188 TIGR01448 recD_rel helicase, p 96.8 0.0017 3.8E-08 79.4 6.1 65 400-473 322-386 (720)
189 TIGR00596 rad1 DNA repair prot 96.8 0.0029 6.3E-08 77.7 8.0 42 612-653 269-317 (814)
190 PF00580 UvrD-helicase: UvrD/R 96.6 0.0023 4.9E-08 69.9 5.4 71 402-481 1-71 (315)
191 PF13401 AAA_22: AAA domain; P 96.3 0.0016 3.6E-08 61.6 1.2 17 416-432 4-20 (131)
192 KOG1805 DNA replication helica 96.3 0.007 1.5E-07 73.2 6.5 127 399-548 667-810 (1100)
193 COG3421 Uncharacterized protei 96.2 0.0029 6.2E-08 72.7 2.7 148 421-578 2-168 (812)
194 KOG1132 Helicase of the DEAD s 96.1 0.0076 1.6E-07 72.3 6.1 79 631-709 561-655 (945)
195 PF13959 DUF4217: Domain of un 96.0 0.0058 1.3E-07 51.2 3.3 44 779-823 20-64 (65)
196 smart00492 HELICc3 helicase su 96.0 0.012 2.6E-07 57.2 6.0 41 669-709 35-78 (141)
197 smart00491 HELICc2 helicase su 96.0 0.012 2.6E-07 57.3 5.8 65 671-735 34-136 (142)
198 PF05970 PIF1: PIF1-like helic 95.9 0.0077 1.7E-07 68.0 4.8 59 402-471 2-66 (364)
199 PRK13889 conjugal transfer rel 95.4 0.017 3.8E-07 72.3 5.6 61 401-472 346-407 (988)
200 KOG1133 Helicase of the DEAD s 95.4 0.1 2.2E-06 61.5 11.2 123 612-737 611-779 (821)
201 TIGR02768 TraA_Ti Ti-type conj 95.3 0.021 4.6E-07 70.3 5.9 61 401-472 352-413 (744)
202 PF14617 CMS1: U3-containing 9 95.3 0.0069 1.5E-07 64.3 1.4 86 455-545 126-212 (252)
203 TIGR00376 DNA helicase, putati 95.3 0.019 4.2E-07 69.4 5.4 66 401-477 157-223 (637)
204 COG1875 NYN ribonuclease and A 95.3 0.028 6.1E-07 61.8 5.7 64 397-468 224-289 (436)
205 COG0553 HepA Superfamily II DN 95.2 0.01 2.2E-07 74.4 2.8 160 400-575 337-510 (866)
206 PHA02533 17 large terminase pr 94.8 0.085 1.8E-06 62.5 8.5 74 401-483 59-132 (534)
207 PRK04296 thymidine kinase; Pro 94.7 0.0094 2E-07 61.0 0.2 37 534-574 78-114 (190)
208 PRK13826 Dtr system oriT relax 94.6 0.05 1.1E-06 68.8 6.4 75 386-472 367-442 (1102)
209 KOG1131 RNA polymerase II tran 94.6 0.095 2E-06 59.7 7.8 75 397-478 12-90 (755)
210 PF13871 Helicase_C_4: Helicas 94.6 0.068 1.5E-06 57.6 6.5 72 672-743 52-135 (278)
211 cd00009 AAA The AAA+ (ATPases 94.5 0.066 1.4E-06 50.5 5.6 17 416-432 19-35 (151)
212 PF03354 Terminase_1: Phage Te 94.2 0.11 2.4E-06 60.9 7.8 129 404-549 1-138 (477)
213 PRK08181 transposase; Validate 94.1 0.063 1.4E-06 58.0 4.9 46 533-578 166-212 (269)
214 PRK06526 transposase; Provisio 94.1 0.049 1.1E-06 58.4 4.1 22 411-432 93-114 (254)
215 PRK14722 flhF flagellar biosyn 93.9 0.11 2.3E-06 58.7 6.5 17 416-432 137-153 (374)
216 PRK10919 ATP-dependent DNA hel 93.9 0.06 1.3E-06 65.8 4.8 70 402-480 3-72 (672)
217 PRK12723 flagellar biosynthesi 93.9 0.097 2.1E-06 59.4 6.1 46 533-578 253-300 (388)
218 KOG0342 ATP-dependent RNA heli 93.4 0.0064 1.4E-07 68.6 -4.1 104 21-124 121-227 (543)
219 TIGR01074 rep ATP-dependent DN 93.4 0.13 2.7E-06 63.0 6.5 70 402-480 2-71 (664)
220 PRK11054 helD DNA helicase IV; 93.2 0.099 2.2E-06 63.7 5.0 72 400-480 195-266 (684)
221 PRK11889 flhF flagellar biosyn 93.0 0.15 3.2E-06 57.6 5.7 63 512-578 302-365 (436)
222 TIGR01075 uvrD DNA helicase II 92.9 0.1 2.2E-06 64.4 4.7 72 400-480 3-74 (715)
223 smart00382 AAA ATPases associa 92.9 0.062 1.3E-06 50.1 2.2 17 416-432 2-18 (148)
224 PRK08727 hypothetical protein; 92.6 0.17 3.7E-06 53.5 5.3 16 417-432 42-57 (233)
225 PRK11773 uvrD DNA-dependent he 92.5 0.14 3E-06 63.2 5.2 72 400-480 8-79 (721)
226 PRK07952 DNA replication prote 92.4 0.19 4.2E-06 53.4 5.3 45 533-577 161-207 (244)
227 PRK14974 cell division protein 92.4 0.12 2.5E-06 57.7 3.8 45 534-578 222-267 (336)
228 PRK06921 hypothetical protein; 92.3 0.13 2.8E-06 55.6 3.9 27 415-442 116-142 (266)
229 TIGR02760 TraI_TIGR conjugativ 92.2 0.67 1.4E-05 63.0 11.3 63 401-474 429-493 (1960)
230 PF00448 SRP54: SRP54-type pro 92.1 0.17 3.6E-06 52.1 4.3 45 534-578 83-128 (196)
231 TIGR03420 DnaA_homol_Hda DnaA 92.0 0.21 4.6E-06 51.9 5.1 18 415-432 37-54 (226)
232 KOG1001 Helicase-like transcri 91.9 0.34 7.3E-06 58.7 7.2 100 632-731 540-641 (674)
233 PRK05642 DNA replication initi 91.7 0.22 4.8E-06 52.6 4.9 44 534-577 97-141 (234)
234 PRK06893 DNA replication initi 91.5 0.22 4.8E-06 52.5 4.5 45 534-578 91-137 (229)
235 PRK12377 putative replication 91.3 0.29 6.2E-06 52.3 5.2 27 416-443 101-127 (248)
236 PRK05703 flhF flagellar biosyn 91.2 0.4 8.7E-06 55.3 6.6 45 534-578 299-345 (424)
237 cd01120 RecA-like_NTPases RecA 90.9 0.27 6E-06 47.5 4.3 44 534-577 85-138 (165)
238 TIGR01547 phage_term_2 phage t 90.8 0.6 1.3E-05 53.3 7.6 136 418-577 3-142 (396)
239 COG4962 CpaF Flp pilus assembl 90.7 0.18 3.9E-06 55.5 3.0 61 397-469 153-214 (355)
240 PRK08116 hypothetical protein; 90.6 0.27 5.8E-06 53.2 4.2 26 417-443 115-140 (268)
241 TIGR01073 pcrA ATP-dependent D 90.5 0.27 5.9E-06 60.8 4.8 72 400-480 3-74 (726)
242 cd01124 KaiC KaiC is a circadi 90.5 0.11 2.5E-06 52.2 1.2 48 419-478 2-49 (187)
243 PRK05580 primosome assembly pr 90.4 0.41 8.9E-06 58.6 6.1 76 631-707 190-266 (679)
244 PHA03368 DNA packaging termina 90.4 1.5 3.3E-05 52.5 10.3 139 414-578 252-393 (738)
245 PF05621 TniB: Bacterial TniB 90.3 0.27 5.8E-06 53.5 3.9 58 417-479 62-120 (302)
246 PRK08084 DNA replication initi 90.2 0.5 1.1E-05 50.0 5.8 43 535-577 98-142 (235)
247 PF05127 Helicase_RecD: Helica 90.2 0.04 8.7E-07 55.5 -2.4 125 420-577 1-125 (177)
248 TIGR02785 addA_Gpos recombinat 90.0 0.32 6.8E-06 63.6 4.9 69 402-480 2-70 (1232)
249 PRK10917 ATP-dependent DNA hel 89.9 0.48 1E-05 58.1 6.1 76 630-705 309-389 (681)
250 PRK14712 conjugal transfer nic 89.8 0.38 8.2E-06 63.2 5.3 65 401-472 835-901 (1623)
251 PRK07471 DNA polymerase III su 89.8 0.43 9.3E-06 54.0 5.2 138 418-574 43-180 (365)
252 KOG0989 Replication factor C, 89.7 0.16 3.4E-06 54.9 1.5 43 533-576 128-170 (346)
253 KOG0701 dsRNA-specific nucleas 89.7 0.16 3.6E-06 65.7 1.9 93 634-726 295-399 (1606)
254 TIGR00595 priA primosomal prot 89.6 0.49 1.1E-05 55.9 5.7 75 631-706 25-100 (505)
255 PRK00149 dnaA chromosomal repl 89.6 0.39 8.4E-06 55.9 4.8 43 534-577 211-255 (450)
256 PF05876 Terminase_GpA: Phage 89.5 0.16 3.4E-06 60.7 1.5 76 401-486 16-94 (557)
257 PRK14087 dnaA chromosomal repl 89.3 0.65 1.4E-05 54.0 6.3 46 533-578 205-252 (450)
258 PRK13709 conjugal transfer nic 89.1 0.53 1.1E-05 62.6 5.8 65 401-472 967-1033(1747)
259 PRK13894 conjugal transfer ATP 89.0 0.41 8.9E-06 53.1 4.2 67 390-467 123-190 (319)
260 PRK14873 primosome assembly pr 88.7 0.8 1.7E-05 55.7 6.7 93 612-707 171-265 (665)
261 TIGR00362 DnaA chromosomal rep 88.4 0.51 1.1E-05 54.1 4.6 16 417-432 137-152 (405)
262 PRK13833 conjugal transfer pro 88.0 0.53 1.2E-05 52.2 4.2 65 392-467 121-186 (323)
263 PF02534 T4SS-DNA_transf: Type 87.6 0.86 1.9E-05 53.2 5.9 49 417-478 45-93 (469)
264 COG1198 PriA Primosomal protei 87.5 1.3 2.8E-05 54.1 7.5 90 612-704 228-318 (730)
265 PRK00411 cdc6 cell division co 87.4 0.8 1.7E-05 52.1 5.4 16 417-432 56-71 (394)
266 TIGR03015 pepcterm_ATPase puta 87.2 0.41 8.9E-06 51.3 2.8 31 402-432 24-59 (269)
267 PRK08769 DNA polymerase III su 87.2 0.49 1.1E-05 52.4 3.4 143 399-573 2-151 (319)
268 PRK07764 DNA polymerase III su 87.2 0.31 6.8E-06 60.5 2.0 39 533-572 119-157 (824)
269 COG1444 Predicted P-loop ATPas 87.1 1.7 3.8E-05 52.9 8.1 140 404-577 217-358 (758)
270 PHA03333 putative ATPase subun 87.1 4.8 0.0001 48.6 11.4 68 403-480 171-241 (752)
271 PRK08903 DnaA regulatory inact 87.0 0.81 1.8E-05 47.9 4.8 43 534-577 90-133 (227)
272 PTZ00112 origin recognition co 86.9 0.88 1.9E-05 56.0 5.4 23 419-442 784-806 (1164)
273 COG1110 Reverse gyrase [DNA re 86.9 0.8 1.7E-05 56.6 5.1 62 630-691 124-191 (1187)
274 cd01126 TraG_VirD4 The TraG/Tr 86.8 0.62 1.3E-05 53.0 4.0 47 418-477 1-47 (384)
275 PHA02544 44 clamp loader, smal 86.7 0.83 1.8E-05 50.3 4.9 37 534-570 100-136 (316)
276 TIGR02782 TrbB_P P-type conjug 86.7 0.92 2E-05 49.9 5.2 67 390-467 107-174 (299)
277 KOG0298 DEAD box-containing he 86.6 0.38 8.2E-06 60.4 2.2 153 415-575 373-550 (1394)
278 KOG1513 Nuclear helicase MOP-3 86.6 0.36 7.7E-06 57.6 1.9 62 675-736 851-921 (1300)
279 PRK09112 DNA polymerase III su 86.1 0.81 1.8E-05 51.5 4.4 39 533-572 140-178 (351)
280 PF00308 Bac_DnaA: Bacterial d 86.0 1.1 2.4E-05 46.8 5.2 47 533-579 96-144 (219)
281 PRK14086 dnaA chromosomal repl 85.9 1 2.3E-05 53.8 5.3 47 533-579 376-424 (617)
282 PRK05298 excinuclease ABC subu 85.7 0.82 1.8E-05 55.8 4.5 66 401-480 12-82 (652)
283 KOG1001 Helicase-like transcri 85.6 0.21 4.6E-06 60.4 -0.6 112 418-548 154-268 (674)
284 PRK11331 5-methylcytosine-spec 85.6 0.85 1.9E-05 52.5 4.3 27 406-432 184-210 (459)
285 TIGR00643 recG ATP-dependent D 85.6 1 2.2E-05 54.7 5.3 76 630-705 283-363 (630)
286 COG2805 PilT Tfp pilus assembl 85.5 0.76 1.7E-05 49.7 3.6 27 418-445 127-153 (353)
287 PRK14721 flhF flagellar biosyn 85.2 1.4 3.1E-05 50.6 5.8 18 415-432 190-207 (420)
288 PF13555 AAA_29: P-loop contai 85.0 0.4 8.7E-06 39.7 0.9 26 415-442 22-47 (62)
289 PF00265 TK: Thymidine kinase; 84.9 1.7 3.7E-05 43.9 5.7 35 419-464 4-38 (176)
290 PRK14088 dnaA chromosomal repl 84.8 1 2.2E-05 52.3 4.6 45 534-578 194-240 (440)
291 PRK12323 DNA polymerase III su 84.7 0.84 1.8E-05 54.8 3.8 39 533-572 123-161 (700)
292 PF01695 IstB_IS21: IstB-like 84.7 1 2.2E-05 45.6 3.9 30 413-443 44-73 (178)
293 PRK13897 type IV secretion sys 84.6 1.6 3.4E-05 52.6 6.2 50 416-478 158-207 (606)
294 TIGR00580 mfd transcription-re 84.6 0.93 2E-05 57.2 4.3 75 631-705 500-579 (926)
295 PRK12402 replication factor C 84.2 0.69 1.5E-05 51.2 2.7 36 534-570 125-160 (337)
296 PRK07003 DNA polymerase III su 84.0 1.2 2.6E-05 54.3 4.7 39 533-572 118-156 (830)
297 KOG1133 Helicase of the DEAD s 83.6 0.68 1.5E-05 54.9 2.4 43 401-443 15-61 (821)
298 PRK12422 chromosomal replicati 83.6 0.86 1.9E-05 52.9 3.3 46 534-579 202-249 (445)
299 PRK14723 flhF flagellar biosyn 83.5 1.5 3.2E-05 53.8 5.3 18 416-433 185-202 (767)
300 PRK05707 DNA polymerase III su 83.1 0.51 1.1E-05 52.5 1.1 31 402-432 4-38 (328)
301 PRK12726 flagellar biosynthesi 83.0 1.3 2.7E-05 50.1 4.1 18 415-432 205-222 (407)
302 PRK06731 flhF flagellar biosyn 82.9 1.5 3.3E-05 47.3 4.7 45 534-578 154-199 (270)
303 KOG0991 Replication factor C, 82.7 0.84 1.8E-05 47.6 2.4 16 417-432 49-64 (333)
304 COG1419 FlhF Flagellar GTP-bin 82.5 1.9 4.1E-05 48.8 5.2 18 415-432 202-219 (407)
305 COG1484 DnaC DNA replication p 82.5 1.2 2.7E-05 47.7 3.7 48 415-474 104-151 (254)
306 PF03237 Terminase_6: Terminas 82.3 4.3 9.3E-05 45.0 8.2 42 420-470 1-42 (384)
307 PRK13851 type IV secretion sys 81.9 1 2.2E-05 50.5 2.9 44 413-468 159-202 (344)
308 PLN03025 replication factor C 81.8 1.8 3.9E-05 47.9 4.9 36 534-570 99-134 (319)
309 COG3973 Superfamily I DNA and 81.7 2.1 4.6E-05 50.3 5.4 69 405-479 216-284 (747)
310 PRK14961 DNA polymerase III su 81.7 1 2.2E-05 51.0 2.9 38 533-571 118-155 (363)
311 PRK04195 replication factor C 81.4 2.2 4.8E-05 50.2 5.6 17 416-432 39-55 (482)
312 PF13177 DNA_pol3_delta2: DNA 81.1 1.4 3.1E-05 43.7 3.4 42 533-575 101-142 (162)
313 PRK13850 type IV secretion sys 80.9 2.7 5.9E-05 51.2 6.2 49 416-477 139-187 (670)
314 COG1219 ClpX ATP-dependent pro 80.9 0.86 1.9E-05 49.6 1.8 19 414-432 95-113 (408)
315 COG2804 PulE Type II secretory 80.9 0.87 1.9E-05 52.7 1.9 39 402-441 242-282 (500)
316 PF03266 NTPase_1: NTPase; In 80.4 1.8 3.8E-05 43.4 3.8 28 533-560 94-123 (168)
317 PTZ00293 thymidine kinase; Pro 80.4 1.5 3.2E-05 45.6 3.2 38 416-464 4-41 (211)
318 cd01121 Sms Sms (bacterial rad 79.8 2.9 6.3E-05 47.4 5.7 52 415-478 81-132 (372)
319 PRK13900 type IV secretion sys 79.8 1.6 3.5E-05 48.7 3.6 18 414-431 158-175 (332)
320 PF01443 Viral_helicase1: Vira 79.7 1.4 2.9E-05 46.0 2.8 14 419-432 1-14 (234)
321 PRK10689 transcription-repair 79.7 1.6 3.4E-05 56.5 3.8 76 630-705 648-728 (1147)
322 PRK09111 DNA polymerase III su 79.7 1.5 3.2E-05 52.9 3.4 40 532-572 130-169 (598)
323 PRK08533 flagellar accessory p 79.6 1.6 3.5E-05 46.0 3.4 53 414-478 22-74 (230)
324 PRK14963 DNA polymerase III su 79.5 3 6.6E-05 49.2 5.9 14 419-432 39-52 (504)
325 KOG1132 Helicase of the DEAD s 79.5 14 0.0003 45.5 11.3 22 716-737 700-721 (945)
326 PRK11823 DNA repair protein Ra 79.5 2.9 6.2E-05 48.7 5.6 52 415-478 79-130 (446)
327 COG1435 Tdk Thymidine kinase [ 79.5 2.7 5.9E-05 42.9 4.7 90 418-547 6-95 (201)
328 TIGR02525 plasmid_TraJ plasmid 79.4 1.7 3.7E-05 49.2 3.7 26 416-442 149-174 (372)
329 COG0470 HolB ATPase involved i 79.3 1.4 2.9E-05 48.5 2.8 39 533-572 108-146 (325)
330 PRK14958 DNA polymerase III su 79.3 3.5 7.5E-05 48.8 6.3 39 533-572 118-156 (509)
331 PRK12724 flagellar biosynthesi 79.3 3 6.4E-05 47.9 5.5 17 416-432 223-239 (432)
332 PRK06835 DNA replication prote 79.0 1.8 3.9E-05 48.2 3.6 27 416-443 183-209 (329)
333 COG1474 CDC6 Cdc6-related prot 79.0 1.4 3E-05 49.9 2.8 26 417-443 43-68 (366)
334 PRK08691 DNA polymerase III su 78.9 2.9 6.4E-05 50.7 5.5 39 533-572 118-156 (709)
335 COG1074 RecB ATP-dependent exo 78.7 2.5 5.3E-05 55.0 5.2 61 415-481 15-75 (1139)
336 PF10412 TrwB_AAD_bind: Type I 78.6 2.1 4.5E-05 48.9 4.1 50 410-470 9-58 (386)
337 COG0513 SrmB Superfamily II DN 78.5 3.1 6.7E-05 49.3 5.6 68 634-705 102-180 (513)
338 PF05496 RuvB_N: Holliday junc 78.3 2.1 4.6E-05 44.8 3.7 14 418-431 52-65 (233)
339 COG0593 DnaA ATPase involved i 78.2 3.2 6.9E-05 47.4 5.3 47 534-580 175-223 (408)
340 cd03239 ABC_SMC_head The struc 77.9 0.65 1.4E-05 46.9 -0.2 41 533-573 115-156 (178)
341 PRK14964 DNA polymerase III su 77.8 1.5 3.3E-05 51.3 2.7 39 532-571 114-152 (491)
342 PRK00771 signal recognition pa 77.5 2.9 6.3E-05 48.4 4.8 43 535-577 176-219 (437)
343 cd01130 VirB11-like_ATPase Typ 77.5 1.7 3.7E-05 44.1 2.7 31 402-432 10-41 (186)
344 PRK13880 conjugal transfer cou 77.3 3.7 8.1E-05 49.9 5.9 47 416-475 175-221 (636)
345 PRK13822 conjugal transfer cou 77.2 3.8 8.1E-05 49.8 5.9 49 416-477 224-272 (641)
346 PRK14952 DNA polymerase III su 77.2 2.8 6.1E-05 50.3 4.7 39 533-572 117-155 (584)
347 PF00437 T2SE: Type II/IV secr 77.0 1.4 3.1E-05 47.4 2.0 43 414-467 125-167 (270)
348 TIGR02524 dot_icm_DotB Dot/Icm 76.5 1.5 3.3E-05 49.5 2.1 18 415-432 133-150 (358)
349 PF12846 AAA_10: AAA-like doma 75.7 2.1 4.6E-05 46.1 3.0 43 416-469 1-43 (304)
350 PRK06067 flagellar accessory p 75.4 1.5 3.2E-05 46.2 1.6 51 416-478 25-75 (234)
351 PRK14956 DNA polymerase III su 75.3 1.6 3.5E-05 50.8 2.0 15 418-432 42-56 (484)
352 PRK06871 DNA polymerase III su 75.1 1.5 3.2E-05 48.8 1.5 39 533-572 106-144 (325)
353 COG4185 Uncharacterized protei 75.0 3.9 8.4E-05 40.5 4.2 19 419-437 5-23 (187)
354 PF05729 NACHT: NACHT domain 75.0 3 6.5E-05 40.5 3.6 25 418-443 2-26 (166)
355 PF06745 KaiC: KaiC; InterPro 74.4 3 6.4E-05 43.6 3.6 53 415-478 18-70 (226)
356 KOG1513 Nuclear helicase MOP-3 74.4 3.1 6.7E-05 50.1 3.9 159 400-575 263-454 (1300)
357 PHA03372 DNA packaging termina 74.1 20 0.00043 42.9 10.3 133 415-576 201-338 (668)
358 COG1200 RecG RecG-like helicas 74.0 3.6 7.7E-05 49.3 4.4 77 629-705 309-390 (677)
359 PRK14949 DNA polymerase III su 74.0 4.5 9.8E-05 50.4 5.4 38 533-571 118-155 (944)
360 PRK06090 DNA polymerase III su 73.9 1.8 3.9E-05 48.0 1.8 41 532-573 106-146 (319)
361 TIGR03877 thermo_KaiC_1 KaiC d 73.8 3 6.6E-05 44.1 3.5 52 415-478 20-71 (237)
362 PRK13341 recombination factor 73.8 3.9 8.5E-05 50.4 4.9 16 417-432 53-68 (725)
363 PRK07993 DNA polymerase III su 73.7 1.4 3.1E-05 49.2 1.0 41 532-573 106-146 (334)
364 PRK13342 recombination factor 73.7 4.3 9.4E-05 46.7 5.0 15 418-432 38-52 (413)
365 PRK10436 hypothetical protein; 73.6 1.8 4E-05 50.4 1.9 39 402-441 202-242 (462)
366 KOG0298 DEAD box-containing he 73.6 8.3 0.00018 49.1 7.5 98 628-729 1218-1315(1394)
367 TIGR03499 FlhF flagellar biosy 73.5 4.5 9.7E-05 44.1 4.8 18 415-432 193-210 (282)
368 COG0210 UvrD Superfamily I DNA 73.4 4.7 0.0001 49.3 5.5 71 401-480 2-72 (655)
369 PF06733 DEAD_2: DEAD_2; Inte 73.3 1.1 2.3E-05 45.1 -0.1 41 508-549 120-160 (174)
370 KOG0331 ATP-dependent RNA heli 73.1 17 0.00037 42.7 9.5 90 631-724 165-272 (519)
371 TIGR00596 rad1 DNA repair prot 73.1 1.7 3.7E-05 54.0 1.6 65 508-576 8-73 (814)
372 TIGR02767 TraG-Ti Ti-type conj 73.0 5.2 0.00011 48.4 5.6 49 417-478 212-260 (623)
373 KOG0347 RNA helicase [RNA proc 73.0 3.8 8.3E-05 47.6 4.1 69 633-705 265-346 (731)
374 COG2256 MGS1 ATPase related to 72.9 5.4 0.00012 45.1 5.2 15 418-432 50-64 (436)
375 COG4626 Phage terminase-like p 72.7 11 0.00023 44.4 7.7 75 401-483 61-146 (546)
376 PRK06964 DNA polymerase III su 72.6 1.7 3.7E-05 48.7 1.3 39 533-572 131-169 (342)
377 cd01127 TrwB Bacterial conjuga 72.5 2.4 5.2E-05 48.7 2.6 50 410-470 36-85 (410)
378 TIGR00064 ftsY signal recognit 72.5 4.7 0.0001 43.7 4.6 17 416-432 72-88 (272)
379 PRK13876 conjugal transfer cou 72.2 3.7 8.1E-05 50.0 4.1 49 416-477 144-192 (663)
380 PRK07133 DNA polymerase III su 72.1 1.6 3.5E-05 53.2 1.0 37 533-570 117-153 (725)
381 PRK14969 DNA polymerase III su 72.0 4.2 9.1E-05 48.4 4.5 39 533-572 118-156 (527)
382 PRK14951 DNA polymerase III su 72.0 5.7 0.00012 48.0 5.5 39 533-572 123-161 (618)
383 PRK14957 DNA polymerase III su 71.8 5.9 0.00013 47.2 5.6 39 533-572 118-156 (546)
384 PRK11634 ATP-dependent RNA hel 71.7 5.1 0.00011 48.7 5.1 71 631-705 74-155 (629)
385 PRK00440 rfc replication facto 71.7 5.6 0.00012 43.5 5.1 35 535-570 103-137 (319)
386 TIGR03819 heli_sec_ATPase heli 71.6 2.8 6.1E-05 46.9 2.8 39 391-431 154-193 (340)
387 COG1618 Predicted nucleotide k 71.6 1.9 4.2E-05 42.7 1.2 120 417-561 6-129 (179)
388 PRK07994 DNA polymerase III su 71.5 3.9 8.5E-05 49.6 4.0 38 533-571 118-155 (647)
389 cd01129 PulE-GspE PulE/GspE Th 71.5 2.2 4.8E-05 46.0 1.8 30 403-432 65-96 (264)
390 PRK05973 replicative DNA helic 71.3 2.8 6E-05 44.5 2.4 65 401-478 50-114 (237)
391 KOG1807 Helicases [Replication 71.2 7.6 0.00017 46.9 6.1 81 390-475 365-447 (1025)
392 PRK14960 DNA polymerase III su 71.1 2.1 4.5E-05 51.6 1.6 37 533-570 117-153 (702)
393 PRK06995 flhF flagellar biosyn 70.9 7.6 0.00016 45.5 6.1 17 416-432 256-272 (484)
394 cd00561 CobA_CobO_BtuR ATP:cor 70.7 1.9 4.2E-05 42.8 1.0 48 533-580 94-143 (159)
395 cd00268 DEADc DEAD-box helicas 70.6 7.1 0.00015 39.6 5.3 71 630-704 68-148 (203)
396 PRK05563 DNA polymerase III su 70.6 2.5 5.4E-05 50.6 2.2 32 533-565 118-149 (559)
397 TIGR02858 spore_III_AA stage I 70.4 4.4 9.6E-05 43.9 3.8 24 408-431 100-126 (270)
398 TIGR00767 rho transcription te 70.4 2.1 4.6E-05 48.6 1.4 20 413-432 165-184 (415)
399 PRK13764 ATPase; Provisional 70.1 3.5 7.7E-05 49.5 3.2 26 415-441 256-281 (602)
400 TIGR01243 CDC48 AAA family ATP 69.5 6.2 0.00013 49.0 5.3 51 378-431 174-227 (733)
401 TIGR02538 type_IV_pilB type IV 69.4 2.5 5.3E-05 50.8 1.8 44 394-441 295-340 (564)
402 TIGR02533 type_II_gspE general 69.2 2.3 4.9E-05 50.1 1.4 36 394-432 221-258 (486)
403 PRK14950 DNA polymerase III su 69.1 6.7 0.00015 47.3 5.4 17 533-549 119-135 (585)
404 TIGR02788 VirB11 P-type DNA tr 69.0 3.7 8.1E-05 45.3 2.9 18 414-431 142-159 (308)
405 COG2909 MalT ATP-dependent tra 68.6 1.8 3.9E-05 52.8 0.4 44 535-578 130-173 (894)
406 cd01131 PilT Pilus retraction 68.4 3.9 8.3E-05 42.0 2.7 14 419-432 4-17 (198)
407 COG5008 PilU Tfp pilus assembl 68.3 3.2 7E-05 44.2 2.1 15 418-432 129-143 (375)
408 PRK05986 cob(I)alamin adenolsy 68.2 2.6 5.6E-05 43.1 1.3 47 533-579 114-162 (191)
409 TIGR01425 SRP54_euk signal rec 68.0 7 0.00015 45.1 4.9 15 418-432 102-116 (429)
410 TIGR02784 addA_alphas double-s 68.0 6.8 0.00015 51.2 5.5 57 416-480 10-66 (1141)
411 PRK12727 flagellar biosynthesi 67.9 4.8 0.0001 47.5 3.7 18 415-432 349-366 (559)
412 PRK14701 reverse gyrase; Provi 67.6 5.2 0.00011 53.5 4.3 61 630-690 121-187 (1638)
413 TIGR01054 rgy reverse gyrase. 67.5 6 0.00013 51.5 4.8 75 631-705 121-205 (1171)
414 PRK11776 ATP-dependent RNA hel 66.9 6.5 0.00014 45.8 4.6 71 631-705 72-153 (460)
415 PRK09183 transposase/IS protei 66.3 5.9 0.00013 42.6 3.8 20 413-432 99-118 (259)
416 TIGR02760 TraI_TIGR conjugativ 66.0 6.6 0.00014 53.8 4.9 66 400-472 1018-1085(1960)
417 TIGR00763 lon ATP-dependent pr 65.8 6.3 0.00014 49.2 4.4 17 416-432 347-363 (775)
418 PRK06645 DNA polymerase III su 65.4 3.6 7.8E-05 48.5 2.0 17 417-433 44-60 (507)
419 PRK10867 signal recognition pa 65.3 8.5 0.00018 44.6 5.0 15 418-432 102-116 (433)
420 PF13481 AAA_25: AAA domain; P 65.1 10 0.00022 38.3 5.0 64 415-480 31-94 (193)
421 TIGR00959 ffh signal recogniti 65.1 7.2 0.00016 45.1 4.3 15 418-432 101-115 (428)
422 PRK13700 conjugal transfer pro 64.8 4.4 9.6E-05 49.3 2.6 50 412-472 181-230 (732)
423 COG1197 Mfd Transcription-repa 64.7 7.4 0.00016 49.5 4.6 75 630-704 642-721 (1139)
424 COG0466 Lon ATP-dependent Lon 64.0 7.5 0.00016 46.9 4.2 66 488-562 380-445 (782)
425 COG0630 VirB11 Type IV secreto 63.9 4.1 8.9E-05 45.1 2.0 34 399-432 125-159 (312)
426 PRK08451 DNA polymerase III su 63.9 4.6 0.0001 47.9 2.5 40 532-572 115-154 (535)
427 PRK14962 DNA polymerase III su 63.5 8.9 0.00019 45.0 4.8 14 419-432 39-52 (472)
428 PF12775 AAA_7: P-loop contain 63.3 4.1 9E-05 44.1 1.9 19 413-431 30-48 (272)
429 TIGR02640 gas_vesic_GvpN gas v 63.0 3.7 8E-05 44.2 1.4 26 407-432 12-37 (262)
430 PRK11034 clpA ATP-dependent Cl 62.9 13 0.00028 46.2 6.3 17 416-432 207-223 (758)
431 COG3972 Superfamily I DNA and 62.8 4.5 9.8E-05 46.6 2.1 71 399-479 160-230 (660)
432 PRK11192 ATP-dependent RNA hel 62.7 11 0.00023 43.6 5.3 72 631-706 73-154 (434)
433 TIGR02868 CydC thiol reductant 62.5 4 8.7E-05 48.4 1.8 39 532-570 486-524 (529)
434 KOG0732 AAA+-type ATPase conta 62.2 3.8 8.3E-05 51.5 1.5 59 373-432 256-315 (1080)
435 PRK14965 DNA polymerase III su 61.9 9.4 0.0002 46.0 4.7 39 533-572 118-156 (576)
436 TIGR01420 pilT_fam pilus retra 61.9 5.7 0.00012 44.6 2.7 17 416-432 122-138 (343)
437 PF10593 Z1: Z1 domain; Inter 61.6 9 0.0002 40.7 4.0 56 682-737 136-192 (239)
438 TIGR00416 sms DNA repair prote 61.4 8.8 0.00019 44.8 4.2 52 415-478 93-144 (454)
439 TIGR00708 cobA cob(I)alamin ad 61.0 4.2 9E-05 41.0 1.3 48 533-580 96-145 (173)
440 TIGR03743 SXT_TraD conjugative 60.8 9 0.0002 46.6 4.3 52 416-478 176-229 (634)
441 PF01935 DUF87: Domain of unkn 60.7 7 0.00015 40.8 3.0 42 416-467 23-64 (229)
442 KOG0745 Putative ATP-dependent 60.7 5.1 0.00011 45.6 2.0 27 414-442 224-250 (564)
443 PRK10416 signal recognition pa 60.4 18 0.00039 40.1 6.3 17 416-432 114-130 (318)
444 KOG2543 Origin recognition com 60.4 9 0.00019 43.0 3.8 47 535-581 116-164 (438)
445 cd00267 ABC_ATPase ABC (ATP-bi 60.4 1.7 3.7E-05 42.6 -1.6 41 534-574 98-138 (157)
446 PRK04328 hypothetical protein; 60.3 8 0.00017 41.3 3.4 52 415-478 22-73 (249)
447 KOG1806 DEAD box containing he 60.3 11 0.00023 47.1 4.7 74 396-478 733-806 (1320)
448 COG0467 RAD55 RecA-superfamily 60.0 9.1 0.0002 41.0 3.8 52 415-478 22-73 (260)
449 cd01122 GP4d_helicase GP4d_hel 59.9 4.2 9.1E-05 43.6 1.2 21 412-432 26-46 (271)
450 cd03221 ABCF_EF-3 ABCF_EF-3 E 59.8 5.1 0.00011 38.8 1.6 30 533-562 87-116 (144)
451 PHA02535 P terminase ATPase su 59.5 22 0.00048 42.4 7.0 86 386-481 123-208 (581)
452 PRK14970 DNA polymerase III su 59.2 17 0.00037 40.9 6.0 16 417-432 40-55 (367)
453 PRK04841 transcriptional regul 59.2 13 0.00027 47.2 5.4 42 536-577 123-164 (903)
454 PRK04537 ATP-dependent RNA hel 58.8 13 0.00029 44.6 5.3 71 457-541 259-332 (572)
455 KOG0338 ATP-dependent RNA heli 58.6 20 0.00044 41.6 6.2 73 630-706 251-334 (691)
456 PF03969 AFG1_ATPase: AFG1-lik 58.5 11 0.00024 42.6 4.2 46 534-580 127-173 (362)
457 KOG2036 Predicted P-loop ATPas 58.5 60 0.0013 39.3 10.1 62 403-474 255-323 (1011)
458 PRK05896 DNA polymerase III su 58.4 5.6 0.00012 47.7 1.9 16 417-432 39-54 (605)
459 PRK07940 DNA polymerase III su 58.2 4.6 9.9E-05 46.2 1.2 43 533-577 116-158 (394)
460 cd03228 ABCC_MRP_Like The MRP 58.2 3.9 8.4E-05 40.8 0.5 41 533-574 113-153 (171)
461 PF07088 GvpD: GvpD gas vesicl 58.1 9.2 0.0002 43.2 3.4 38 415-464 9-46 (484)
462 TIGR02397 dnaX_nterm DNA polym 57.8 17 0.00037 40.5 5.7 15 418-432 38-52 (355)
463 PRK14948 DNA polymerase III su 57.7 12 0.00026 45.5 4.6 16 417-432 39-54 (620)
464 COG1222 RPT1 ATP-dependent 26S 57.6 16 0.00035 40.8 5.1 56 334-432 146-201 (406)
465 PRK08699 DNA polymerase III su 57.5 6.9 0.00015 43.6 2.4 31 402-432 2-37 (325)
466 PRK14954 DNA polymerase III su 57.3 8.5 0.00018 46.6 3.2 39 532-571 125-163 (620)
467 cd01393 recA_like RecA is a b 56.8 8 0.00017 40.2 2.6 17 416-432 19-35 (226)
468 COG1132 MdlB ABC-type multidru 56.6 1.4 3.1E-05 52.8 -3.5 39 532-570 481-519 (567)
469 PRK07399 DNA polymerase III su 56.4 8.2 0.00018 42.8 2.7 58 509-572 103-160 (314)
470 PRK10865 protein disaggregatio 56.2 30 0.00066 43.7 8.0 16 417-432 200-215 (857)
471 PRK04837 ATP-dependent RNA hel 55.9 20 0.00042 41.3 5.9 70 457-540 257-329 (423)
472 COG2255 RuvB Holliday junction 55.8 6.4 0.00014 42.6 1.6 16 417-432 53-68 (332)
473 PRK14953 DNA polymerase III su 55.7 20 0.00044 42.2 6.0 30 533-563 118-147 (486)
474 TIGR03878 thermo_KaiC_2 KaiC d 55.0 13 0.00028 40.0 3.9 18 415-432 35-52 (259)
475 PF04665 Pox_A32: Poxvirus A32 55.0 8.5 0.00018 40.9 2.4 26 413-439 9-35 (241)
476 PF13238 AAA_18: AAA domain; P 54.9 7.6 0.00017 35.9 1.9 14 419-432 1-14 (129)
477 PRK14959 DNA polymerase III su 54.7 6.1 0.00013 47.6 1.4 16 418-433 40-55 (624)
478 KOG0339 ATP-dependent RNA heli 54.6 13 0.00028 43.1 3.8 69 632-704 296-375 (731)
479 TIGR03754 conj_TOL_TraD conjug 54.2 14 0.00031 44.7 4.4 54 416-480 180-235 (643)
480 cd00984 DnaB_C DnaB helicase C 54.2 11 0.00023 39.7 3.1 28 414-442 11-38 (242)
481 KOG2028 ATPase related to the 54.1 19 0.00041 40.3 4.9 15 418-432 164-178 (554)
482 TIGR03881 KaiC_arch_4 KaiC dom 54.0 12 0.00026 39.0 3.5 18 415-432 19-36 (229)
483 PF07728 AAA_5: AAA domain (dy 53.9 8.1 0.00018 36.8 1.9 15 418-432 1-15 (139)
484 KOG0058 Peptide exporter, ABC 53.8 3.7 7.9E-05 49.5 -0.6 147 414-571 492-658 (716)
485 KOG2004 Mitochondrial ATP-depe 53.7 18 0.00038 43.9 4.9 32 510-547 487-518 (906)
486 PHA00350 putative assembly pro 53.4 13 0.00028 42.5 3.7 16 419-434 4-19 (399)
487 PF05872 DUF853: Bacterial pro 53.2 6 0.00013 45.4 1.0 30 406-435 9-38 (502)
488 TIGR03345 VI_ClpV1 type VI sec 53.2 14 0.00031 46.6 4.4 14 419-432 599-612 (852)
489 PF01580 FtsK_SpoIIIE: FtsK/Sp 52.9 8.9 0.00019 39.3 2.2 27 415-442 37-63 (205)
490 COG1126 GlnQ ABC-type polar am 52.8 5.8 0.00012 41.3 0.7 26 414-441 26-51 (240)
491 cd01363 Motor_domain Myosin an 52.8 9.7 0.00021 38.6 2.4 25 408-432 14-40 (186)
492 PTZ00110 helicase; Provisional 51.1 18 0.00039 43.3 4.6 71 456-540 378-451 (545)
493 TIGR02759 TraD_Ftype type IV c 51.0 9 0.0002 46.0 2.1 43 414-467 174-216 (566)
494 TIGR03346 chaperone_ClpB ATP-d 51.0 24 0.00053 44.6 6.0 17 416-432 194-210 (852)
495 PF03193 DUF258: Protein of un 50.9 16 0.00036 36.3 3.6 50 389-443 3-57 (161)
496 PF13207 AAA_17: AAA domain; P 50.8 6.5 0.00014 36.3 0.7 14 419-432 2-15 (121)
497 TIGR02639 ClpA ATP-dependent C 50.5 18 0.00039 45.0 4.7 17 416-432 203-219 (731)
498 TIGR02655 circ_KaiC circadian 50.4 14 0.0003 43.6 3.5 51 416-478 263-313 (484)
499 COG1136 SalX ABC-type antimicr 50.3 7 0.00015 41.1 0.9 27 414-442 29-55 (226)
500 COG4604 CeuD ABC-type enteroch 49.7 5 0.00011 41.2 -0.3 144 415-564 26-183 (252)
No 1
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.2e-83 Score=693.64 Aligned_cols=458 Identities=47% Similarity=0.700 Sum_probs=420.6
Q ss_pred ccccccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccc
Q 003178 373 EPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQL 452 (842)
Q Consensus 373 ~~~~~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~ 452 (842)
.++.....|+++.|++.++++++.+||..||++|+.+|+.++.|+|+++.|.||||||+||+||+++.+++......
T Consensus 76 ~s~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r--- 152 (543)
T KOG0342|consen 76 DSITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR--- 152 (543)
T ss_pred cchhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC---
Confidence 34556678999999999999999999999999999999999999999999999999999999999999998776543
Q ss_pred cCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEE
Q 003178 453 VPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (842)
Q Consensus 453 ~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L 532 (842)
.++.+||||||||||.|++.++++++.+++++.+.+++||++...+..++.+ +|+|+|||||||++||++..++. .
T Consensus 153 -~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k-~~niliATPGRLlDHlqNt~~f~--~ 228 (543)
T KOG0342|consen 153 -NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVK-GCNILIATPGRLLDHLQNTSGFL--F 228 (543)
T ss_pred -CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhc-cccEEEeCCchHHhHhhcCCcch--h
Confidence 6788999999999999999999999999989999999999999999999888 79999999999999999987753 4
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeecccCcchh------hccccceeeeecccccccccccccccc
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL------VLKREHTYIDTVGLGSVETPVKIKQSC 606 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l------~~~~~~~~i~~v~~~~~~~~~~l~~~~ 606 (842)
.+++++|+||||+++++||+..+..|+..+|+++|+++||||++..+ .+..++.+++++......+...+.|.|
T Consensus 229 r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgy 308 (543)
T KOG0342|consen 229 RNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGY 308 (543)
T ss_pred hccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceE
Confidence 56799999999999999999999999999999999999999999884 566788999999999999999999999
Q ss_pred cccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEE
Q 003178 607 LVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILV 686 (842)
Q Consensus 607 ~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLV 686 (842)
++++...++..+..+|+++.. .+++||||+||..+.+++.+|+...++|..+||+++|..|+.++.+|++.+..|||
T Consensus 309 vv~~~~~~f~ll~~~LKk~~~---~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~ 385 (543)
T KOG0342|consen 309 VVAPSDSRFSLLYTFLKKNIK---RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILV 385 (543)
T ss_pred EeccccchHHHHHHHHHHhcC---CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEE
Confidence 999999999999999998853 38999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCCCCCCCCCCCCCChHHHHH
Q 003178 687 TSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKDLPLDKLQLPHLNPEIQLQ 766 (842)
Q Consensus 687 aTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~~~l~~~~~~~~~~~~~~~ 766 (842)
||||++||+|||+|+||||||+|.++.+||||+|||||.|+.|.+++|+.|+|.+|+++|+++|+++++++...++..+.
T Consensus 386 cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~lpl~~~e~~~~~~~~v~~ 465 (543)
T KOG0342|consen 386 CTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKLPLEEFEFPPLKPEDVQS 465 (543)
T ss_pred ecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhCCCcccCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888776655
Q ss_pred HHHhhhccchhhHH---HHHHHHHhhccchhhhccchhhHHHHHHHHHHhhcCCCCCchhHHHHHHhCCCCCCCcccc
Q 003178 767 MDNHMAKIDNNVKE---AAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRPPPLFRKTALKMGLKDIPGIRLR 841 (842)
Q Consensus 767 i~~~l~~~~~~~~~---~a~~s~l~yy~~~~~~~~~~~~~~~l~~~la~s~gL~~~P~v~~~~~~klgl~~~pg~~i~ 841 (842)
+...+......+++ .+|.+|++||+++........+..+|+ ++|+|||+..||.++-....+||+++.+|++.+
T Consensus 466 ~~~~li~~~y~~~~aak~ay~syl~~y~s~slk~~~~~~~l~La-~~~~s~gf~~pp~v~~~i~~~~~~k~~~~~~~~ 542 (543)
T KOG0342|consen 466 QLEKLISKNYSLKEAAKEAYKSYLGAYNSHSLKDIFNVNLLELA-AVAKSFGFSVPPAVDLKIDGKMGLKGNKGLRGR 542 (543)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhccchhhhcccccchhhHH-HHHHHcCCCCCccceeeccccccccCCCCCCCC
Confidence 55555444444444 467779999999975555566788888 999999999999999999999999999999875
No 2
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2e-72 Score=611.69 Aligned_cols=431 Identities=35% Similarity=0.585 Sum_probs=372.3
Q ss_pred ccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCce
Q 003178 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (842)
Q Consensus 377 ~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 456 (842)
....|.+++|+..++++|++.+|..||.||+++||..|.|+||+..|.|||||||||++|+|++|++.++.. ..|+
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~----~DGl 142 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP----TDGL 142 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC----CCCc
Confidence 456799999999999999999999999999999999999999999999999999999999999999987654 4577
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecce
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~ 536 (842)
.||||+||||||.|+++++.+..+++ .+++++++||.+...+..++. .++|+|||||||+.||..+.++ ...++.
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi~--~mNILVCTPGRLLQHmde~~~f--~t~~lQ 217 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERIS--QMNILVCTPGRLLQHMDENPNF--STSNLQ 217 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhhh--cCCeEEechHHHHHHhhhcCCC--CCCcce
Confidence 89999999999999999999998876 899999999999776655553 4899999999999999887654 456899
Q ss_pred eeeecccccccccccccchhhhhhcccccccceeecccCcchhh-----ccccceeeeecccccccccccccccccccCc
Q 003178 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKIKQSCLVAPH 611 (842)
Q Consensus 537 ~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~-----~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~ 611 (842)
++||||||+|+||||...+..|+..+|+.+||+|||||.+..+. ...++.++....-....+|..+.|+|++++.
T Consensus 218 mLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l 297 (758)
T KOG0343|consen 218 MLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL 297 (758)
T ss_pred EEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEeh
Confidence 99999999999999999999999999999999999999998742 2245566665555567889999999999999
Q ss_pred hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH--hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc
Q 003178 612 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 689 (842)
Q Consensus 612 ~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd 689 (842)
..|+.+|+.+|..|+ ..++|||++||+++.++|..|+++ |+++..|||.|+|..|..++..|-..+..||+|||
T Consensus 298 ~~Ki~~L~sFI~shl----k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TD 373 (758)
T KOG0343|consen 298 EDKIDMLWSFIKSHL----KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTD 373 (758)
T ss_pred hhHHHHHHHHHHhcc----ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeeh
Confidence 999999999999885 569999999999999999999988 78999999999999999999999999999999999
Q ss_pred ccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccch-hhhhccCCC--CCCCCCCCCC-CChHHHH
Q 003178 690 VSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWE-EYFLDDLKD--LPLDKLQLPH-LNPEIQL 765 (842)
Q Consensus 690 v~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E-~~~l~~L~~--~~l~~~~~~~-~~~~~~~ 765 (842)
+++||+|||.|+||||||+|.++++||||+|||+|.+..|.|+++++|.| +.++..|+. +++..+.+.. -..++..
T Consensus 374 v~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~I~i~~i~i~~~k~~~i~~ 453 (758)
T KOG0343|consen 374 VAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKKIPIKEIKIDPEKLTSIRN 453 (758)
T ss_pred hhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcCCCHHhhccCHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999988 688888865 4444443221 1111222
Q ss_pred HHHHhhhccchhhHHHHHHHHHhhccchhhhccch--hhHHHH-HHHHHHhhcCCCCCch
Q 003178 766 QMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDK--TTLVEL-ANKFAQSIGLQRPPPL 822 (842)
Q Consensus 766 ~i~~~l~~~~~~~~~~a~~s~l~yy~~~~~~~~~~--~~~~~l-~~~la~s~gL~~~P~v 822 (842)
.+...+.+ +.++++.+..+|+.|.++++.. +++ +++..+ +.+||.||||+..|++
T Consensus 454 ~l~~ll~~-~~eLk~~aqka~isY~rsi~~~-rdK~~f~~~~l~~~afa~s~Gl~~~p~~ 511 (758)
T KOG0343|consen 454 KLEALLAK-DPELKEYAQKAFISYLRSIYLM-RDKRVFDVEKLDIEAFADSLGLPGTPRI 511 (758)
T ss_pred HHHHHHhh-CHHHHHHHHHHHHHHHHHHHhh-ccchhhcchhccHHHHHHhcCCCCCchh
Confidence 33333333 5678888999999999998743 232 344444 5789999999999984
No 3
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-72 Score=601.16 Aligned_cols=451 Identities=32% Similarity=0.499 Sum_probs=369.1
Q ss_pred cccccccC--CCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCc
Q 003178 378 QKRFDECG--ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPP 455 (842)
Q Consensus 378 ~~~F~~l~--l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~ 455 (842)
...|++++ |+++++++|..+||..|||+|..+||.++.++||++.|+||||||+||++|+++.+++........ .
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~---~ 79 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG---Q 79 (567)
T ss_pred CcchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc---c
Confidence 35677775 559999999999999999999999999999999999999999999999999999997655433221 3
Q ss_pred eEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecc
Q 003178 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (842)
Q Consensus 456 ~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l 535 (842)
+.+|||+||||||.||.+++..++.+.+++++.+++||..+..+...+...+++|+|||||||.+++..... .+++.++
T Consensus 80 vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~-~l~~rsL 158 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAE-KLSFRSL 158 (567)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhh-hcccccc
Confidence 579999999999999999999999988899999999999999999999989999999999999999987432 2446799
Q ss_pred eeeeecccccccccccccchhhhhhcccccccceeecccCcchhh-----ccccceeeeecccccccccccccccccccC
Q 003178 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKIKQSCLVAP 610 (842)
Q Consensus 536 ~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~-----~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~ 610 (842)
+++|+||||+++++||...+..|+.+||++++|-|||||...++. ..+++..+....-....+|..+..+|+++.
T Consensus 159 e~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~ 238 (567)
T KOG0345|consen 159 EILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE 238 (567)
T ss_pred ceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEec
Confidence 999999999999999999999999999999999999999988753 222333333222233448889999999999
Q ss_pred chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH--hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEec
Q 003178 611 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLILVTS 688 (842)
Q Consensus 611 ~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaT 688 (842)
...|+..+.++|..+ ...++|||++||..+++.+..|..+ ...++.+||.|++..|.++++.|+.....+|+||
T Consensus 239 a~eK~~~lv~~L~~~----~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~T 314 (567)
T KOG0345|consen 239 ADEKLSQLVHLLNNN----KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCT 314 (567)
T ss_pred HHHHHHHHHHHHhcc----ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEee
Confidence 999999999999874 4679999999999999999999876 5789999999999999999999999999999999
Q ss_pred cccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCC---CCCCCCCCCCCCChHHHH
Q 003178 689 DVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK---DLPLDKLQLPHLNPEIQL 765 (842)
Q Consensus 689 dv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~---~~~l~~~~~~~~~~~~~~ 765 (842)
||++||||||+|+||||||+|.++..|+||+|||||+|+.|.+++|+.|.|..|++.|+ ...++....+.-......
T Consensus 315 DVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~~~~~ 394 (567)
T KOG0345|consen 315 DVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASLSVYQ 394 (567)
T ss_pred hhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcccccchhHHH
Confidence 99999999999999999999999999999999999999999999999999988877653 244555443332222222
Q ss_pred HHHHhhhccchhhH---HHHHHHHHhhccchhhhccchhhHHHH-HHHHHHhhcCCCCCchhHHHHHHhCCC--CCCCcc
Q 003178 766 QMDNHMAKIDNNVK---EAAYHAWLGYYNSIREIGRDKTTLVEL-ANKFAQSIGLQRPPPLFRKTALKMGLK--DIPGIR 839 (842)
Q Consensus 766 ~i~~~l~~~~~~~~---~~a~~s~l~yy~~~~~~~~~~~~~~~l-~~~la~s~gL~~~P~v~~~~~~klgl~--~~pg~~ 839 (842)
.+.... .-+..+. -.||.+|+.+|..|.. ...+++.+| ...+|.+|||...|+|++-.-.+.+-. ..|++.
T Consensus 395 ~ir~~~-~~DR~~~dkG~kAFVS~VraY~~H~c--s~Ifr~kdLd~~~lA~~YgLl~lP~M~Elk~~~~~~~~~~~~~id 471 (567)
T KOG0345|consen 395 DIRSII-SKDRAVLDKGLKAFVSHVRAYKKHHC--SYIFRLKDLDLGKLATLYGLLRLPKMPELKQYKIGEFFFPKPAID 471 (567)
T ss_pred HHHHHh-cccHHHHhhhHHHHHHHHHHHhhcce--eEEEeecCCcHHHHHHHHHHHhCCCcHHHhhhhccceeccCCCcc
Confidence 222221 1233333 2588888988887742 122223333 345688999999999988666666544 455543
No 4
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-68 Score=580.34 Aligned_cols=449 Identities=33% Similarity=0.507 Sum_probs=371.3
Q ss_pred ccccccccccccccccCCCchhHhhhc-ccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhccc
Q 003178 369 KREEEPILSQKRFDECGISPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSS 447 (842)
Q Consensus 369 ~~~~~~~~~~~~F~~l~l~~~l~~~L~-~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~ 447 (842)
++..+.++....|.++||++.++..|. .|++..||.+|.++||.+++|+|++|.|+||||||++|++|+++.|......
T Consensus 126 k~v~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~k 205 (708)
T KOG0348|consen 126 KQVSEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPK 205 (708)
T ss_pred ccccccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcc
Confidence 455567788899999999999999998 5899999999999999999999999999999999999999999999876543
Q ss_pred CcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCC
Q 003178 448 STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG 527 (842)
Q Consensus 448 ~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~ 527 (842)
.++..|+.+|||+||||||.|+|+.++++++.+..|..+.+.||...+.+..++.+ +++|+|+|||||.|||.+...
T Consensus 206 --i~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRK-GiNILIgTPGRLvDHLknT~~ 282 (708)
T KOG0348|consen 206 --IQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRK-GINILIGTPGRLVDHLKNTKS 282 (708)
T ss_pred --ccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhc-CceEEEcCchHHHHHHhccch
Confidence 34677889999999999999999999999999889999999999999888888865 599999999999999998864
Q ss_pred ceEEEecceeeeecccccccccccccchhhhhhcc-------------cccccceeecccCcchhhc-----cccceeee
Q 003178 528 LSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL-------------PRRRQSLLFSATMPKELVL-----KREHTYID 589 (842)
Q Consensus 528 ~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l-------------~~~~q~il~SATl~~~l~~-----~~~~~~i~ 589 (842)
+.++++++||+||||+|+++||..++..|++.+ |.+.|.+|+|||++..+.- ..++.++.
T Consensus 283 --i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ 360 (708)
T KOG0348|consen 283 --IKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYIS 360 (708)
T ss_pred --heeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeee
Confidence 456789999999999999999999999998765 3357999999999876311 11222222
Q ss_pred e----------------c-------ccccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHH
Q 003178 590 T----------------V-------GLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSL 646 (842)
Q Consensus 590 ~----------------v-------~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~ 646 (842)
. + .+.....|..+.|.|.++|+..++-.|..+|...+......++|||+++++.+++
T Consensus 361 ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeF 440 (708)
T KOG0348|consen 361 LDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEF 440 (708)
T ss_pred ccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHH
Confidence 0 0 0122456788899999999999999999999988877777799999999999999
Q ss_pred HHHHHHHH----------------------hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeE
Q 003178 647 LYLLLREM----------------------KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVV 704 (842)
Q Consensus 647 l~~~L~~~----------------------~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI 704 (842)
.|..|... +..++.|||+|+|.+|+.+++.|......||+||||++||||+|+|++||
T Consensus 441 Hy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vV 520 (708)
T KOG0348|consen 441 HYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVV 520 (708)
T ss_pred HHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEE
Confidence 99999753 24578999999999999999999999999999999999999999999999
Q ss_pred EecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCCCCC--CCCCCC------------CCChH-------H
Q 003178 705 QVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKDLPL--DKLQLP------------HLNPE-------I 763 (842)
Q Consensus 705 ~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~~~l--~~~~~~------------~~~~~-------~ 763 (842)
+||+|.++++|+||+|||+|+|..|.+++|+.|.|..|++.|+...+ .++... ....+ .
T Consensus 521 QYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~l~q~~~~~~l~~~~~~~~k~~~~e~~~~at~~ 600 (708)
T KOG0348|consen 521 QYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIMLLQFDMEILLPAFKPRKDKAKTKEWQERATTL 600 (708)
T ss_pred EeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcchhhccchhhhhhhcCcccccccchhhhhhHHHH
Confidence 99999999999999999999999999999999999999988765321 111110 01111 1
Q ss_pred HHHHHHhhhcc--chhhHHHHHHHHHhhccchhhhccchhhHHHH-HHHHHHhhcCCCCC-ch
Q 003178 764 QLQMDNHMAKI--DNNVKEAAYHAWLGYYNSIREIGRDKTTLVEL-ANKFAQSIGLQRPP-PL 822 (842)
Q Consensus 764 ~~~i~~~l~~~--~~~~~~~a~~s~l~yy~~~~~~~~~~~~~~~l-~~~la~s~gL~~~P-~v 822 (842)
+..++..+..- ..++...+|.+|+.+|..+..-.+..+.+..+ .+++|+||+|.+.| ++
T Consensus 601 q~~~e~~~~~~~~~~~~a~kaf~S~vr~Yath~~elk~iFnvr~lHlGH~AKSFaLReaP~k~ 663 (708)
T KOG0348|consen 601 QLNLERLVVGDEAMKNLAKKAFVSWVRAYATHPSELKSIFNVRFLHLGHVAKSFALREAPGKL 663 (708)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHhhChhhhccceehhhhhhhHHHHhhHhhhcchhh
Confidence 12222222110 12344578999999999886555666667666 68999999999999 44
No 5
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.3e-69 Score=564.98 Aligned_cols=362 Identities=37% Similarity=0.575 Sum_probs=320.8
Q ss_pred ccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCce
Q 003178 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (842)
Q Consensus 377 ~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 456 (842)
...+|.++++.+.+++++...|+..||+||+++||.++.|+|||+.|.||||||.+|+||++++++.... .+
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~--------~~ 130 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK--------LF 130 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC--------Cc
Confidence 3467999999999999999999999999999999999999999999999999999999999999997542 36
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecce
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~ 536 (842)
++|||+||||||.||.+.+..+.... ++.+.++.||.+...+...+.+ .++|||||||+|++|+.+..+ +++..++
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~k-kPhilVaTPGrL~dhl~~Tkg--f~le~lk 206 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLSK-KPHILVATPGRLWDHLENTKG--FSLEQLK 206 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhhc-CCCEEEeCcHHHHHHHHhccC--ccHHHhH
Confidence 89999999999999999999987654 8999999999998766665544 479999999999999997765 4678999
Q ss_pred eeeecccccccccccccchhhhhhcccccccceeecccCcchhhccccceeee---ecccccccccccccccccccCchh
Q 003178 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYID---TVGLGSVETPVKIKQSCLVAPHEL 613 (842)
Q Consensus 537 ~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~i~---~v~~~~~~~~~~l~~~~~~~~~~~ 613 (842)
++|+||||+++|+.|...+..|+..+|..+|+++||||+|..+.-.......+ ........+...+.|+|+.++...
T Consensus 207 ~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~ 286 (476)
T KOG0330|consen 207 FLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKD 286 (476)
T ss_pred HHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccc
Confidence 99999999999999999999999999999999999999999853211111111 111223345667899999999999
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccccc
Q 003178 614 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSAR 693 (842)
Q Consensus 614 k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ar 693 (842)
|...|..++.+. .+..+||||+||..+.+++-.|+.+|+.+..+||.|+|..|...++.|++|.+.||||||+++|
T Consensus 287 K~~yLV~ll~e~----~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSR 362 (476)
T KOG0330|consen 287 KDTYLVYLLNEL----AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASR 362 (476)
T ss_pred cchhHHHHHHhh----cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcc
Confidence 999999999976 3578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCCCCCCCC
Q 003178 694 GMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKDLPLDKL 754 (842)
Q Consensus 694 GlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~~~l~~~ 754 (842)
|+|+|.|++|||||+|.+..+||||+||+||+|++|.++.|++.+|...+..|+..--.+.
T Consensus 363 GLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 363 GLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred cCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999888777765433333
No 6
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-67 Score=585.77 Aligned_cols=360 Identities=35% Similarity=0.506 Sum_probs=321.7
Q ss_pred cccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEE
Q 003178 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (842)
Q Consensus 380 ~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~L 459 (842)
.|.++++++.+..+|+..||..|||||.++||.++.|+|++..|.|||||||+|+||++.++.+.. .......++++|
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~--~~~~~~~~P~vL 169 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ--GKLSRGDGPIVL 169 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcc--ccccCCCCCeEE
Confidence 799999999999999999999999999999999999999999999999999999999999998741 122234567899
Q ss_pred EeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeee
Q 003178 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (842)
Q Consensus 460 IL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lV 539 (842)
||+||||||.|+.+++.++.... .+.+.|++||.....+...+.+ +++|+|+|||||+++|... ...|+++.|+|
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~-gvdiviaTPGRl~d~le~g---~~~l~~v~ylV 244 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDLER-GVDVVIATPGRLIDLLEEG---SLNLSRVTYLV 244 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHHhc-CCcEEEeCChHHHHHHHcC---CccccceeEEE
Confidence 99999999999999999998765 5789999999999888877765 4899999999999999887 47789999999
Q ss_pred ecccccccccccccchhhhhhcc-cccccceeecccCcchhhc-----cccceeeeecccccccccccccccccccCchh
Q 003178 540 LDEADHLLDLGFRKDVENIVDCL-PRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKIKQSCLVAPHEL 613 (842)
Q Consensus 540 lDEAh~lld~gf~~~i~~Il~~l-~~~~q~il~SATl~~~l~~-----~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~ 613 (842)
|||||+|+++||+++++.|+..+ ++.+|++++|||+|..+.. ..++..+.............+.|...+++...
T Consensus 245 LDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~ 324 (519)
T KOG0331|consen 245 LDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETA 324 (519)
T ss_pred eccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHH
Confidence 99999999999999999999999 5567999999999998532 12444444444444556678889999999889
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccccc
Q 003178 614 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSAR 693 (842)
Q Consensus 614 k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ar 693 (842)
|...|..+|..+. ....+|+||||+|++.|+.+...|+..++++..|||+++|.+|..+++.|++|+..||||||+|+|
T Consensus 325 K~~~l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaR 403 (519)
T KOG0331|consen 325 KLRKLGKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAAR 403 (519)
T ss_pred HHHHHHHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccc
Confidence 9999999999876 556789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCC
Q 003178 694 GMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 747 (842)
Q Consensus 694 GlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~ 747 (842)
|||||+|++|||||+|.++++|+||+|||||+|+.|.+++|++..+......+.
T Consensus 404 GLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~ 457 (519)
T KOG0331|consen 404 GLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELI 457 (519)
T ss_pred cCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876555443
No 7
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-65 Score=550.30 Aligned_cols=357 Identities=32% Similarity=0.483 Sum_probs=311.3
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
..+|.+++|+..+++++..+||..|||||.++||..+.|+|++.||.||||||.||++|+|++++-.... ..-.+
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-----~~~TR 254 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-----VAATR 254 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-----Cccee
Confidence 3579999999999999999999999999999999999999999999999999999999999998865432 34568
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
+|||+||||||.|++.+.+++..+. .+.+++++||.+.+.+...|.+. ++|+|+|||||++||.+..+ +.+.++.+
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~-PDIVIATPGRlIDHlrNs~s--f~ldsiEV 330 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSR-PDIVIATPGRLIDHLRNSPS--FNLDSIEV 330 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHhhC-CCEEEecchhHHHHhccCCC--ccccceeE
Confidence 9999999999999999999998876 69999999999998777777665 79999999999999998875 46789999
Q ss_pred eeecccccccccccccchhhhhhcccccccceeecccCcchhhcccccee---eeecccccccccccccccccccCc---
Q 003178 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTY---IDTVGLGSVETPVKIKQSCLVAPH--- 611 (842)
Q Consensus 538 lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~---i~~v~~~~~~~~~~l~~~~~~~~~--- 611 (842)
+|+||||+||+.||..++..|+..+|+++|++||||||+..+.-.....+ +.........++..+.|.|+.+.+
T Consensus 331 LvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re 410 (691)
T KOG0338|consen 331 LVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKRE 410 (691)
T ss_pred EEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccc
Confidence 99999999999999999999999999999999999999988421111111 111112233455567777765432
Q ss_pred hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccc
Q 003178 612 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 691 (842)
Q Consensus 612 ~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ 691 (842)
..+-.++..++...+ ...+|||+.|++.|..+.-+|--+|+.+..+||.++|.+|...++.|+.++++||||||++
T Consensus 411 ~dRea~l~~l~~rtf----~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvA 486 (691)
T KOG0338|consen 411 GDREAMLASLITRTF----QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVA 486 (691)
T ss_pred cccHHHHHHHHHHhc----ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechh
Confidence 345566777776654 4589999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCC
Q 003178 692 ARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 747 (842)
Q Consensus 692 arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~ 747 (842)
+|||||++|.+||||.+|.+...|+||+|||+|+|+.|.+++|+...|...++.+-
T Consensus 487 sRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~ii 542 (691)
T KOG0338|consen 487 SRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEII 542 (691)
T ss_pred hccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887653
No 8
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-63 Score=574.04 Aligned_cols=356 Identities=40% Similarity=0.584 Sum_probs=313.4
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
..|+++++++.++++|.++||..|||||.++||.++.|+|++++|+||||||+||++|+++++...... ... .+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~-----~~~-~a 102 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVER-----KYV-SA 102 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccccc-----CCC-ce
Confidence 569999999999999999999999999999999999999999999999999999999999997642110 011 18
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceee
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~l 538 (842)
||++||||||.|+++++..+..+..++.+.+++||.++..+...+.. +++|||||||||++|+... .+.+.+++++
T Consensus 103 Lil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~-~~~ivVaTPGRllD~i~~~---~l~l~~v~~l 178 (513)
T COG0513 103 LILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR-GVDIVVATPGRLLDLIKRG---KLDLSGVETL 178 (513)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc-CCCEEEECccHHHHHHHcC---CcchhhcCEE
Confidence 99999999999999999999887657889999999998888877766 4999999999999999887 5778999999
Q ss_pred eecccccccccccccchhhhhhcccccccceeecccCcchhh-----ccccceeeeecccccccccccccccccccCchh
Q 003178 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKIKQSCLVAPHEL 613 (842)
Q Consensus 539 VlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~-----~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~ 613 (842)
|+||||+|+++||.+++..|+..+|.++|+++||||+|..+. ...++..+.........+...+.|.++.+....
T Consensus 179 VlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~ 258 (513)
T COG0513 179 VLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE 258 (513)
T ss_pred EeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH
Confidence 999999999999999999999999999999999999999742 112222222221122236778999999998876
Q ss_pred -hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccc
Q 003178 614 -HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 692 (842)
Q Consensus 614 -k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~a 692 (842)
|+..|..++... ...++||||+|+..++.++..|...|+.+..|||+|+|.+|.++++.|++|+..||||||+++
T Consensus 259 ~k~~~L~~ll~~~----~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaa 334 (513)
T COG0513 259 EKLELLLKLLKDE----DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAA 334 (513)
T ss_pred HHHHHHHHHHhcC----CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhh
Confidence 999999988865 234799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccc-hhhhhccCCC
Q 003178 693 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPW-EEYFLDDLKD 748 (842)
Q Consensus 693 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~-E~~~l~~L~~ 748 (842)
||||||+|++|||||+|.+++.|+||+|||||+|+.|.+++|+++. |..++..++.
T Consensus 335 RGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~ 391 (513)
T COG0513 335 RGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEK 391 (513)
T ss_pred ccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 6676666554
No 9
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-61 Score=504.33 Aligned_cols=361 Identities=35% Similarity=0.521 Sum_probs=318.7
Q ss_pred ccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCce
Q 003178 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (842)
Q Consensus 377 ~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 456 (842)
+.+.|+.||+++++.+.|+++|+..|||+|..|||.||.|+|+|.+|.||||||++|.+|+|+++.+... +.
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~--------gi 76 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY--------GI 76 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC--------cc
Confidence 3467999999999999999999999999999999999999999999999999999999999999977653 45
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCC-ceEEEecc
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG-LSVRLMGL 535 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~-~~~~L~~l 535 (842)
.+||++||||||.|+.+.|..+.+. .++.+.+++||++.-.+...|.. .++|+|+|||||.+++..+.+ ....+.++
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~-l~lK~~vivGG~d~i~qa~~L~~-rPHvVvatPGRlad~l~sn~~~~~~~~~rl 154 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKL-LNLKVSVIVGGTDMIMQAAILSD-RPHVVVATPGRLADHLSSNLGVCSWIFQRL 154 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhccc-ccceEEEEEccHHHhhhhhhccc-CCCeEecCccccccccccCCccchhhhhce
Confidence 7999999999999999999888665 48999999999987655555544 479999999999999987622 22346789
Q ss_pred eeeeecccccccccccccchhhhhhcccccccceeecccCcchhhccccce-----eeeecccccccccccccccccccC
Q 003178 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHT-----YIDTVGLGSVETPVKIKQSCLVAP 610 (842)
Q Consensus 536 ~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~-----~i~~v~~~~~~~~~~l~~~~~~~~ 610 (842)
+++|+||||++++.+|...+..+..++|+.+|+++||||+++.+....... ....-......++..+.+.|+.++
T Consensus 155 kflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~ 234 (442)
T KOG0340|consen 155 KFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVS 234 (442)
T ss_pred eeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecc
Confidence 999999999999999999999999999999999999999998753211110 111112345677888999999999
Q ss_pred chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc
Q 003178 611 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 690 (842)
Q Consensus 611 ~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv 690 (842)
...+-.++..+|...-.. ..+.++||++++.+|+.++..|+.+++.+..+||.|+|.+|...+.+|+++...|||||||
T Consensus 235 ~~vkdaYLv~~Lr~~~~~-~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDV 313 (442)
T KOG0340|consen 235 IDVKDAYLVHLLRDFENK-ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDV 313 (442)
T ss_pred hhhhHHHHHHHHhhhhhc-cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEech
Confidence 999999999999876433 6779999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCC
Q 003178 691 SARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 748 (842)
Q Consensus 691 ~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~ 748 (842)
++||+|||.|++|||||+|.++.+|+||+|||+|+|+.|.++.|+++.|-..+..+++
T Consensus 314 AsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~ 371 (442)
T KOG0340|consen 314 ASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEE 371 (442)
T ss_pred hhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998877776654
No 10
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-60 Score=497.76 Aligned_cols=390 Identities=29% Similarity=0.429 Sum_probs=327.3
Q ss_pred cchHHHHHHHHHHhhccccCCCcccccccccccccccccccc-cCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceE
Q 003178 342 HDFEEQVELIRKEISKNKLNGNGEKKEKREEEPILSQKRFDE-CGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAV 420 (842)
Q Consensus 342 ~~~e~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~F~~-l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvi 420 (842)
...+++++.++++.....+.+-. ..+....| .+..+|++ ++..+++++.+++.||.+|||||.+|+|.+|+|.|++
T Consensus 185 ~ls~~q~~~~r~en~~it~dd~K--~gekrpIP-nP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~Dli 261 (629)
T KOG0336|consen 185 NLSKEQLQEWRKENFNITCDDLK--EGEKRPIP-NPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLI 261 (629)
T ss_pred cCCHHHHHHHHHcCCcEEecccc--cCCcccCC-CCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceE
Confidence 56678888888886665544321 11111122 23467876 5789999999999999999999999999999999999
Q ss_pred EeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeecc
Q 003178 421 VKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500 (842)
Q Consensus 421 i~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~ 500 (842)
.+|.||+|||++|++|.+-++....... ....++.+|+++|||+||.|+.-++.++. +.++...+++||.+...+.
T Consensus 262 GVAQTgtgKtL~~L~pg~ihi~aqp~~~--~qr~~p~~lvl~ptreLalqie~e~~kys--yng~ksvc~ygggnR~eqi 337 (629)
T KOG0336|consen 262 GVAQTGTGKTLAFLLPGFIHIDAQPKRR--EQRNGPGVLVLTPTRELALQIEGEVKKYS--YNGLKSVCVYGGGNRNEQI 337 (629)
T ss_pred EEEecCCCcCHHHhccceeeeeccchhh--hccCCCceEEEeccHHHHHHHHhHHhHhh--hcCcceEEEecCCCchhHH
Confidence 9999999999999999988876543321 13456689999999999999999888874 3588899999999888777
Q ss_pred ccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhhcccccccceeecccCcchhh
Q 003178 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV 580 (842)
Q Consensus 501 ~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~ 580 (842)
..+.. +.+|+++|||+|.++...+ .++|.++.||||||||+|+||||.+++.+|+-.+.+++|+++.|||+|..+.
T Consensus 338 e~lkr-gveiiiatPgrlndL~~~n---~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~Vr 413 (629)
T KOG0336|consen 338 EDLKR-GVEIIIATPGRLNDLQMDN---VINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVR 413 (629)
T ss_pred HHHhc-CceEEeeCCchHhhhhhcC---eeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHH
Confidence 77754 5899999999999998877 5889999999999999999999999999999999999999999999998852
Q ss_pred -----ccccceeeeecccccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHh
Q 003178 581 -----LKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK 655 (842)
Q Consensus 581 -----~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~ 655 (842)
...++ .+..++.........++|.+++.....++..+..++..+ .+..|+||||..+..++.|...|+-.|
T Consensus 414 rLa~sY~Kep-~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~m---s~ndKvIiFv~~K~~AD~LSSd~~l~g 489 (629)
T KOG0336|consen 414 RLAQSYLKEP-MIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANM---SSNDKVIIFVSRKVMADHLSSDFCLKG 489 (629)
T ss_pred HHHHHhhhCc-eEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhc---CCCceEEEEEechhhhhhccchhhhcc
Confidence 11222 222233333334556788887777788888887777765 467899999999999999999999999
Q ss_pred hhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEe
Q 003178 656 MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLL 735 (842)
Q Consensus 656 ~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll 735 (842)
+..-.|||+-.|.+|+..++.|++|+++||||||+++||||+|+|+||+|||+|.+++.|+||+|||||+|+.|.++.|+
T Consensus 490 i~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~l 569 (629)
T KOG0336|consen 490 ISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFL 569 (629)
T ss_pred cchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhccC
Q 003178 736 APWEEYFLDDL 746 (842)
Q Consensus 736 ~~~E~~~l~~L 746 (842)
+..+.....+|
T Consensus 570 t~~D~~~a~eL 580 (629)
T KOG0336|consen 570 TRNDWSMAEEL 580 (629)
T ss_pred ehhhHHHHHHH
Confidence 98887655544
No 11
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=7.1e-60 Score=511.96 Aligned_cols=355 Identities=31% Similarity=0.531 Sum_probs=309.3
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCc-ccccCce
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST-TQLVPPI 456 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~-~~~~~~~ 456 (842)
..+|++.+++..+++.+.+.||..|+|||.++||..++++|+|..|.||||||++|++|++-.+.....-.. .....|+
T Consensus 244 lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gp 323 (673)
T KOG0333|consen 244 LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGP 323 (673)
T ss_pred ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCc
Confidence 467999999999999999999999999999999999999999999999999999999999988876543222 1234578
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecce
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~ 536 (842)
+++||+|||+||+||.++..+++... ++.++.++||.++..+--.+ +.+|+|+|+|||+|++.|.+. .+-+..+.
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fql-s~gceiviatPgrLid~Lenr---~lvl~qct 398 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQL-SMGCEIVIATPGRLIDSLENR---YLVLNQCT 398 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhh-hccceeeecCchHHHHHHHHH---HHHhccCc
Confidence 99999999999999999999998765 79999999999887554344 446999999999999999887 45678999
Q ss_pred eeeecccccccccccccchhhhhhcccc-------------------------cccceeecccCcchhhc-----cccce
Q 003178 537 MLVLDEADHLLDLGFRKDVENIVDCLPR-------------------------RRQSLLFSATMPKELVL-----KREHT 586 (842)
Q Consensus 537 ~lVlDEAh~lld~gf~~~i~~Il~~l~~-------------------------~~q~il~SATl~~~l~~-----~~~~~ 586 (842)
+||+||||+|+|+||.+++..|+..+|. -+|+++||||+|+.+.- ...+.
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 9999999999999999999999998873 17999999999998532 22222
Q ss_pred eeeecccccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCc
Q 003178 587 YIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKP 666 (842)
Q Consensus 587 ~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~ 666 (842)
++. ++ ........+.|.++.+..+.++..|..+|... ...++|||+|+++.|+.+++.|.+.++++..|||+.+
T Consensus 479 ~vt-ig-~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~----~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~ 552 (673)
T KOG0333|consen 479 VVT-IG-SAGKPTPRVEQKVEMVSEDEKRKKLIEILESN----FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKS 552 (673)
T ss_pred EEE-ec-cCCCCccchheEEEEecchHHHHHHHHHHHhC----CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCcc
Confidence 221 11 12234456888888899999999999888875 3458999999999999999999999999999999999
Q ss_pred chhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhh
Q 003178 667 QLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFL 743 (842)
Q Consensus 667 ~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l 743 (842)
|.+|..+++.|++|..+||||||+++||||||+|.+|||||++.++++|+||||||||+|+.|.++.|+++.+....
T Consensus 553 qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ 629 (673)
T KOG0333|consen 553 QEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVF 629 (673)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999885433
No 12
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-59 Score=476.11 Aligned_cols=359 Identities=32% Similarity=0.510 Sum_probs=312.5
Q ss_pred ccccccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccc
Q 003178 373 EPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQL 452 (842)
Q Consensus 373 ~~~~~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~ 452 (842)
..+....+|+++++++++++++...||++|+.+|+.||+.|+.|+|||++|..|+|||.+|.+-+++.+.-.
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-------- 92 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-------- 92 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc--------
Confidence 445566789999999999999999999999999999999999999999999999999999999888665322
Q ss_pred cCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEE
Q 003178 453 VPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (842)
Q Consensus 453 ~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L 532 (842)
...+++|||+||||||.|+.+.+..+..+. ++.+..++||.+...+.+.+. .+.+++.+|||++++++... .+..
T Consensus 93 ~r~tQ~lilsPTRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkld-~G~hvVsGtPGrv~dmikr~---~L~t 167 (400)
T KOG0328|consen 93 VRETQALILSPTRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKLD-YGQHVVSGTPGRVLDMIKRR---SLRT 167 (400)
T ss_pred cceeeEEEecChHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhhc-ccceEeeCCCchHHHHHHhc---cccc
Confidence 223579999999999999999999887654 899999999999988888887 56899999999999999877 4667
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeecccCcchhhccccceeeeecc---ccccccccccccccccc
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVG---LGSVETPVKIKQSCLVA 609 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~i~~v~---~~~~~~~~~l~~~~~~~ 609 (842)
..++++|+||||.|++.||..++..|+..+|+..|++++|||+|.++.-......-+++. .....+...++++|+.+
T Consensus 168 r~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~v 247 (400)
T KOG0328|consen 168 RAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAV 247 (400)
T ss_pred cceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeee
Confidence 889999999999999999999999999999999999999999999864322222222222 12233445688998877
Q ss_pred Cchh-hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEec
Q 003178 610 PHEL-HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTS 688 (842)
Q Consensus 610 ~~~~-k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaT 688 (842)
..++ |+..|+.+.... .-.+++|||+|+..++.|.+.+++.++.|..+||+|+|++|..++..|++|+.+||++|
T Consensus 248 e~EewKfdtLcdLYd~L----tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitT 323 (400)
T KOG0328|consen 248 EKEEWKFDTLCDLYDTL----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITT 323 (400)
T ss_pred chhhhhHhHHHHHhhhh----ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEe
Confidence 7665 999998887654 23589999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCC
Q 003178 689 DVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 748 (842)
Q Consensus 689 dv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~ 748 (842)
|+.+||+|+|.|++|||||+|.+.+.|+||+||.||.|+.|.++-|+...|...+..+++
T Consensus 324 DVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq 383 (400)
T KOG0328|consen 324 DVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQ 383 (400)
T ss_pred chhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877665555443
No 13
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-60 Score=517.80 Aligned_cols=360 Identities=31% Similarity=0.445 Sum_probs=300.6
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcC-cceEEeeccCCCceeeehhHHHHHHHhhcccC-----ccc
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSS-----TTQ 451 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g-~dvii~A~TGSGKTlafllPil~~l~~~~~~~-----~~~ 451 (842)
...|..|+++..++++|..+||..||+||..+||++..| .|++..|.|||||||||.||+++.+....... ...
T Consensus 180 vsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~ 259 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSA 259 (731)
T ss_pred hHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHh
Confidence 456999999999999999999999999999999999999 69999999999999999999999665432111 112
Q ss_pred ccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEE
Q 003178 452 LVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVR 531 (842)
Q Consensus 452 ~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~ 531 (842)
....+.+||++||||||.|+...+..+... +++.+..++||.....+++-+.. .++|+||||||||.++.....+..+
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~-t~i~v~si~GGLavqKQqRlL~~-~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEK-TQIRVASITGGLAVQKQQRLLNQ-RPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccc-cCeEEEEeechhHHHHHHHHHhc-CCCEEEecchHHHHHHHhhhhhhhh
Confidence 223346999999999999999999998774 69999999999999877776665 5899999999999999877655567
Q ss_pred Eecceeeeecccccccccccccchhhhhhccc-----ccccceeecccCcchhh--------------------------
Q 003178 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLP-----RRRQSLLFSATMPKELV-------------------------- 580 (842)
Q Consensus 532 L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~-----~~~q~il~SATl~~~l~-------------------------- 580 (842)
+.++++|||||||+|++.|+...+..|+..+. .++|++.||||++-...
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 88999999999999999999999999988776 36899999999864310
Q ss_pred --ccccceeeeecccccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhH
Q 003178 581 --LKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNV 658 (842)
Q Consensus 581 --~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v 658 (842)
+...+.+++.. ....+...+....+.|+..+|...|+.+|..+ ++++|||||+++.+..|+-+|+.+++..
T Consensus 418 ig~~~kpkiiD~t--~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-----PGrTlVF~NsId~vKRLt~~L~~L~i~p 490 (731)
T KOG0347|consen 418 IGFRGKPKIIDLT--PQSATASTLTESLIECPPLEKDLYLYYFLTRY-----PGRTLVFCNSIDCVKRLTVLLNNLDIPP 490 (731)
T ss_pred hCccCCCeeEecC--cchhHHHHHHHHhhcCCccccceeEEEEEeec-----CCceEEEechHHHHHHHHHHHhhcCCCC
Confidence 01111111111 11223344555556666666666666555543 6799999999999999999999999999
Q ss_pred HHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccc
Q 003178 659 REMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPW 738 (842)
Q Consensus 659 ~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~ 738 (842)
+.||+.|.|++|.+.+++|++....||||||||+||||||+|.|||||.+|.+.+-|+||.|||+|+++.|..++|+.|.
T Consensus 491 ~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~ 570 (731)
T KOG0347|consen 491 LPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQ 570 (731)
T ss_pred chhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccC
Q 003178 739 EEYFLDDL 746 (842)
Q Consensus 739 E~~~l~~L 746 (842)
|..++..|
T Consensus 571 e~~~~~KL 578 (731)
T KOG0347|consen 571 EVGPLKKL 578 (731)
T ss_pred HhHHHHHH
Confidence 97655443
No 14
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-58 Score=475.15 Aligned_cols=353 Identities=29% Similarity=0.463 Sum_probs=314.8
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
..|+++.|.++++..+.+.||++|+|+|.++||.++.|+|+++.|..|+|||-+|++|+++.+.... ..+++
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~--------~~IQ~ 156 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK--------NVIQA 156 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc--------cceeE
Confidence 5699999999999999999999999999999999999999999999999999999999998875432 24579
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceee
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~l 538 (842)
+|++||||||.|+.+.++++.++. ++.+...+||++...+.-++. .+.+++|+||||+++++... ...++++.++
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl~-~~VH~~vgTPGRIlDL~~Kg---Va~ls~c~~l 231 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRLN-QTVHLVVGTPGRILDLAKKG---VADLSDCVIL 231 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeeec-CceEEEEcCChhHHHHHhcc---cccchhceEE
Confidence 999999999999999999988765 799999999999998887775 45899999999999999876 4678899999
Q ss_pred eecccccccccccccchhhhhhcccccccceeecccCcchhhccccceeee--ecccccccccccccccccccCchhhHH
Q 003178 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYID--TVGLGSVETPVKIKQSCLVAPHELHFQ 616 (842)
Q Consensus 539 VlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~i~--~v~~~~~~~~~~l~~~~~~~~~~~k~~ 616 (842)
|+||||.|++..|...+..++..+|+.+|++++|||+|-.+.......+.. .+.+-..-+...+.|+|.++....|+.
T Consensus 232 V~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvh 311 (459)
T KOG0326|consen 232 VMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVH 311 (459)
T ss_pred EechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhh
Confidence 999999999999999999999999999999999999998753322211111 122333456778899999999999999
Q ss_pred HHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCC
Q 003178 617 ILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMD 696 (842)
Q Consensus 617 ~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlD 696 (842)
.|..++.+.. -.+.||||||...++.++..+.++|+.++++|+.|.|..|.+++..|++|.++.|||||.+.||||
T Consensus 312 CLntLfskLq----INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGID 387 (459)
T KOG0326|consen 312 CLNTLFSKLQ----INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGID 387 (459)
T ss_pred hHHHHHHHhc----ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccc
Confidence 9888887652 347899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCC
Q 003178 697 YPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 748 (842)
Q Consensus 697 ip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~ 748 (842)
+++|++|||||+|.+.++|.||+||+||.|+.|.|+.+++-.|...+..+++
T Consensus 388 iqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~ 439 (459)
T KOG0326|consen 388 IQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQ 439 (459)
T ss_pred cceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999988877766643
No 15
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.8e-58 Score=537.22 Aligned_cols=359 Identities=32% Similarity=0.453 Sum_probs=304.8
Q ss_pred ccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCce
Q 003178 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (842)
Q Consensus 377 ~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 456 (842)
+..+|+++++++.++++|.++||..||++|.++||.+++|+|+|++||||||||++|++|++.++...... ....++
T Consensus 128 p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~---~~~~gp 204 (545)
T PTZ00110 128 PVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL---RYGDGP 204 (545)
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc---cCCCCc
Confidence 34679999999999999999999999999999999999999999999999999999999999988754221 112356
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecce
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~ 536 (842)
.+|||+||||||.|+.+.+.++.... ++.+.+++||.....+...+. .+++|+|+||++|+++|... ...+.+++
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l~-~~~~IlVaTPgrL~d~l~~~---~~~l~~v~ 279 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYALR-RGVEILIACPGRLIDFLESN---VTNLRRVT 279 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHHH-cCCCEEEECHHHHHHHHHcC---CCChhhCc
Confidence 89999999999999999999987653 688888999987665555554 35899999999999999765 35578999
Q ss_pred eeeecccccccccccccchhhhhhcccccccceeecccCcchhhc-----c-ccceeeeecccccccccccccccccccC
Q 003178 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVL-----K-REHTYIDTVGLGSVETPVKIKQSCLVAP 610 (842)
Q Consensus 537 ~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~-----~-~~~~~i~~v~~~~~~~~~~l~~~~~~~~ 610 (842)
+|||||||+|++++|..++..|+..+++.+|+++||||+|..+.. . .....+.. ..........+.+.+.++.
T Consensus 280 ~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~v-g~~~l~~~~~i~q~~~~~~ 358 (545)
T PTZ00110 280 YLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNV-GSLDLTACHNIKQEVFVVE 358 (545)
T ss_pred EEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEE-CCCccccCCCeeEEEEEEe
Confidence 999999999999999999999999999999999999999987421 1 11122211 1111223345666666677
Q ss_pred chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc
Q 003178 611 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 690 (842)
Q Consensus 611 ~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv 690 (842)
...+...|..++..... ...++||||++++.|+.++..|+..++.+..+||++++.+|..+++.|++|+..|||||++
T Consensus 359 ~~~k~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv 436 (545)
T PTZ00110 359 EHEKRGKLKMLLQRIMR--DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDV 436 (545)
T ss_pred chhHHHHHHHHHHHhcc--cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcch
Confidence 77788888888876542 4679999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccC
Q 003178 691 SARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDL 746 (842)
Q Consensus 691 ~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L 746 (842)
++||||+|+|++||+||+|.++++|+||+|||||+|+.|.|++|+++.+......|
T Consensus 437 ~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l 492 (545)
T PTZ00110 437 ASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDL 492 (545)
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999876655544
No 16
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.1e-57 Score=539.34 Aligned_cols=362 Identities=34% Similarity=0.523 Sum_probs=308.8
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
.+|.+++|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+.... .++++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~--------~~~~~ 77 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL--------KAPQI 77 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc--------CCCeE
Confidence 4699999999999999999999999999999999999999999999999999999999998875421 23479
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceee
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~l 538 (842)
|||+|||+||.|+++.+..+.....++.+..++||.++..+...+. .+++|||+||++|++++... .+.++++++|
T Consensus 78 LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~-~~~~IVVgTPgrl~d~l~r~---~l~l~~l~~l 153 (629)
T PRK11634 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRG---TLDLSKLSGL 153 (629)
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc-CCCCEEEECHHHHHHHHHcC---CcchhhceEE
Confidence 9999999999999999999988777899999999987765555554 45899999999999999765 3568899999
Q ss_pred eecccccccccccccchhhhhhcccccccceeecccCcchhhc-----cccceeeeecccccccccccccccccccCchh
Q 003178 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKIKQSCLVAPHEL 613 (842)
Q Consensus 539 VlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~-----~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~ 613 (842)
||||||+|++++|...+..|+..+|..+|+++||||+|..+.. ......+... ........+.+.++.+....
T Consensus 154 VlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~--~~~~~~~~i~q~~~~v~~~~ 231 (629)
T PRK11634 154 VLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQ--SSVTTRPDISQSYWTVWGMR 231 (629)
T ss_pred EeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEcc--CccccCCceEEEEEEechhh
Confidence 9999999999999999999999999999999999999987521 1112222111 11122334566666677777
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccccc
Q 003178 614 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSAR 693 (842)
Q Consensus 614 k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ar 693 (842)
+...|..++... ...++||||+|+..+..++..|...++.+..+||.|++.+|..+++.|++|+.+|||||+++++
T Consensus 232 k~~~L~~~L~~~----~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~ar 307 (629)
T PRK11634 232 KNEALVRFLEAE----DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 (629)
T ss_pred HHHHHHHHHHhc----CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhc
Confidence 888887777643 3458999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCC---CCCCCCCCCC
Q 003178 694 GMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD---LPLDKLQLPH 758 (842)
Q Consensus 694 GlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~---~~l~~~~~~~ 758 (842)
|||+|+|++|||||+|.+++.|+||+|||||+|+.|.|++|+.+.|..+++.+++ ..+....++.
T Consensus 308 GIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~ 375 (629)
T PRK11634 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN 375 (629)
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCc
Confidence 9999999999999999999999999999999999999999999998877777654 3444444443
No 17
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.9e-58 Score=522.62 Aligned_cols=359 Identities=32% Similarity=0.492 Sum_probs=301.4
Q ss_pred ccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCce
Q 003178 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (842)
Q Consensus 377 ~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 456 (842)
+..+|++++|++.++++|.++||..|||+|.++||.+++|+|++++||||||||++|++|+++.+........ ....++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~-~~~~~~ 84 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPED-RKVNQP 84 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccc-cccCCc
Confidence 4467999999999999999999999999999999999999999999999999999999999999876432111 112356
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecce
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~ 536 (842)
++|||+|||+||.|+++.+..+.... ++.+..++||.....+...+. .+++|+|+||++|++++... ...+.+++
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~TP~~l~~~l~~~---~~~l~~v~ 159 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLE-SGVDILIGTTGRLIDYAKQN---HINLGAIQ 159 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhc-CCCCEEEECHHHHHHHHHcC---Cccccccc
Confidence 89999999999999999999887654 788999999887665555454 45899999999999998765 35678999
Q ss_pred eeeecccccccccccccchhhhhhcccc--cccceeecccCcchhhc-----cccceeeeeccccccccccccccccccc
Q 003178 537 MLVLDEADHLLDLGFRKDVENIVDCLPR--RRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKIKQSCLVA 609 (842)
Q Consensus 537 ~lVlDEAh~lld~gf~~~i~~Il~~l~~--~~q~il~SATl~~~l~~-----~~~~~~i~~v~~~~~~~~~~l~~~~~~~ 609 (842)
+|||||||+|++++|...+..++..++. .+|+++||||++..+.. .....++... ........+.+.+...
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~--~~~~~~~~i~~~~~~~ 237 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVE--PEQKTGHRIKEELFYP 237 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEc--CCCcCCCceeEEEEeC
Confidence 9999999999999999999999998874 57789999999876421 1122222211 1111233455555555
Q ss_pred CchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc
Q 003178 610 PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 689 (842)
Q Consensus 610 ~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd 689 (842)
....+...+..++... ...++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+
T Consensus 238 ~~~~k~~~l~~ll~~~----~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd 313 (423)
T PRK04837 238 SNEEKMRLLQTLIEEE----WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD 313 (423)
T ss_pred CHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec
Confidence 5667777777777653 356899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCC
Q 003178 690 VSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 747 (842)
Q Consensus 690 v~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~ 747 (842)
+++||||+|+|++||+||+|.++..|+||+|||||.|+.|.|++|+++.+...+..++
T Consensus 314 v~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~ 371 (423)
T PRK04837 314 VAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIE 371 (423)
T ss_pred hhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998876666554
No 18
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-57 Score=502.01 Aligned_cols=353 Identities=34% Similarity=0.499 Sum_probs=308.1
Q ss_pred cccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccC--ceE
Q 003178 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP--PIY 457 (842)
Q Consensus 380 ~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~--~~~ 457 (842)
.|++..+.+.+...++..||..|||||+.+||.+..|+|+++||+||||||.||++|++.++++........... .++
T Consensus 75 ~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~ 154 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPR 154 (482)
T ss_pred cccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCc
Confidence 788889999999999999999999999999999999999999999999999999999999999886654443333 478
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
+||++||||||.|+++++.++... .++.+...+||.+...+...+. .+|+|+|||||+|.+++... .+.|.++++
T Consensus 155 ~lIlapTReL~~Qi~nea~k~~~~-s~~~~~~~ygg~~~~~q~~~~~-~gcdIlvaTpGrL~d~~e~g---~i~l~~~k~ 229 (482)
T KOG0335|consen 155 ALILAPTRELVDQIYNEARKFSYL-SGMKSVVVYGGTDLGAQLRFIK-RGCDILVATPGRLKDLIERG---KISLDNCKF 229 (482)
T ss_pred eEEEeCcHHHhhHHHHHHHhhccc-ccceeeeeeCCcchhhhhhhhc-cCccEEEecCchhhhhhhcc---eeehhhCcE
Confidence 999999999999999999998754 4788999999988876666655 45999999999999999887 588999999
Q ss_pred eeecccccccc-cccccchhhhhhcccc----cccceeecccCcchhh------ccccceeeeecccccccccccccccc
Q 003178 538 LVLDEADHLLD-LGFRKDVENIVDCLPR----RRQSLLFSATMPKELV------LKREHTYIDTVGLGSVETPVKIKQSC 606 (842)
Q Consensus 538 lVlDEAh~lld-~gf~~~i~~Il~~l~~----~~q~il~SATl~~~l~------~~~~~~~i~~v~~~~~~~~~~l~~~~ 606 (842)
|||||||+|+| +||.++|..|+.++.. .+|++|||||+|..+. +...+.++... ........+.|..
T Consensus 230 ~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~--rvg~~~~ni~q~i 307 (482)
T KOG0335|consen 230 LVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVG--RVGSTSENITQKI 307 (482)
T ss_pred EEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEe--eeccccccceeEe
Confidence 99999999999 9999999999988754 7899999999998852 22223333322 2234566788888
Q ss_pred cccCchhhHHHHHHHHhhhhcCCCCc-----eEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcc
Q 003178 607 LVAPHELHFQILHHLLKEHILGTPDY-----KVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASK 681 (842)
Q Consensus 607 ~~~~~~~k~~~L~~lL~~~~~~~~~~-----kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~ 681 (842)
+.+....|...|..+|.......... +++|||.|++.+..+...|...++++..+||..+|.+|.+.+..|+.|+
T Consensus 308 ~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~ 387 (482)
T KOG0335|consen 308 LFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGK 387 (482)
T ss_pred eeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCC
Confidence 88888888888888887544221233 8999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccch
Q 003178 682 RLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWE 739 (842)
Q Consensus 682 ~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E 739 (842)
..|||||++++||||||+|++||+||+|.+..+|+||+|||||.|+.|.++.|+....
T Consensus 388 ~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~ 445 (482)
T KOG0335|consen 388 APVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKN 445 (482)
T ss_pred cceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999997433
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.5e-57 Score=521.78 Aligned_cols=351 Identities=34% Similarity=0.522 Sum_probs=305.0
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
.+|+++++++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++++.... ..+++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~--------~~~~~ 75 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR--------FRVQA 75 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc--------CCceE
Confidence 5699999999999999999999999999999999999999999999999999999999999875322 13479
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceee
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~l 538 (842)
|||+|||+||.|+++.++.+.....++.+..++||.+...+...+. .+++|+|+|||+|.+++... ...+.++++|
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~-~~~~IvV~Tp~rl~~~l~~~---~~~l~~l~~l 151 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE-HGAHIIVGTPGRILDHLRKG---TLDLDALNTL 151 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc-CCCCEEEEChHHHHHHHHcC---CccHHHCCEE
Confidence 9999999999999999999887666788999999988766555554 45899999999999999765 3567899999
Q ss_pred eecccccccccccccchhhhhhcccccccceeecccCcchhhcc-----ccceeeeecccccccccccccccccccCchh
Q 003178 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLK-----REHTYIDTVGLGSVETPVKIKQSCLVAPHEL 613 (842)
Q Consensus 539 VlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~-----~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~ 613 (842)
||||||+|+++||...+..++..++..+|+++||||+++.+... .....+.. ........+.+.++.++...
T Consensus 152 ViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~---~~~~~~~~i~~~~~~~~~~~ 228 (460)
T PRK11776 152 VLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKV---ESTHDLPAIEQRFYEVSPDE 228 (460)
T ss_pred EEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEE---CcCCCCCCeeEEEEEeCcHH
Confidence 99999999999999999999999999999999999999874221 11222211 11222344677777777778
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccccc
Q 003178 614 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSAR 693 (842)
Q Consensus 614 k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ar 693 (842)
+...+..++... ...++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 229 k~~~l~~ll~~~----~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~r 304 (460)
T PRK11776 229 RLPALQRLLLHH----QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAAR 304 (460)
T ss_pred HHHHHHHHHHhc----CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEeccccc
Confidence 888888887653 4568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCC
Q 003178 694 GMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 748 (842)
Q Consensus 694 GlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~ 748 (842)
|||+|+|++||+||+|.++..|+||+|||||+|+.|.|++|+.+.|...++.+++
T Consensus 305 GiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~ 359 (460)
T PRK11776 305 GLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIED 359 (460)
T ss_pred ccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988776655543
No 20
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=9.9e-58 Score=478.57 Aligned_cols=363 Identities=31% Similarity=0.467 Sum_probs=313.2
Q ss_pred ccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCce
Q 003178 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (842)
Q Consensus 377 ~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 456 (842)
+..+|.++.++..+++.|++.|+.+|||||-+.||.+++|+|+|..|-||||||++|.+|++...+.....-+-....|+
T Consensus 168 PIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP 247 (610)
T KOG0341|consen 168 PIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGP 247 (610)
T ss_pred chhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999888877655555566788
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhc-----CCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEE
Q 003178 457 YVLILCPTRELASQIAAEAIALLKN-----HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVR 531 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~-----~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~ 531 (842)
.+||+||+|+||.|+++.+..++.. ++.++..+++||..+..+.... +.+.+|+|+|||||.++|... ...
T Consensus 248 ~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v-~~GvHivVATPGRL~DmL~KK---~~s 323 (610)
T KOG0341|consen 248 YGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVV-RRGVHIVVATPGRLMDMLAKK---IMS 323 (610)
T ss_pred eeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHH-hcCeeEEEcCcchHHHHHHHh---hcc
Confidence 9999999999999999998887643 4567889999999988665555 456999999999999999876 466
Q ss_pred EecceeeeecccccccccccccchhhhhhcccccccceeecccCcchhhccccceeeeeccc--c-cccccccccccccc
Q 003178 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGL--G-SVETPVKIKQSCLV 608 (842)
Q Consensus 532 L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~i~~v~~--~-~~~~~~~l~~~~~~ 608 (842)
|.-++|+++||||+|+|+||..++..|+.++..++|+++||||+|..+..+....++.++.+ . ......++.|.+.+
T Consensus 324 Ld~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEy 403 (610)
T KOG0341|consen 324 LDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEY 403 (610)
T ss_pred HHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHH
Confidence 77889999999999999999999999999999999999999999998755544333333222 1 12233455566667
Q ss_pred cCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEec
Q 003178 609 APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTS 688 (842)
Q Consensus 609 ~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaT 688 (842)
+..+.|.-.|...|++. ..++||||..+..++.++++|--.|..++.+||+..|.+|...++.|+.|+.+|||||
T Consensus 404 VkqEaKiVylLeCLQKT-----~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVAT 478 (610)
T KOG0341|consen 404 VKQEAKIVYLLECLQKT-----SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVAT 478 (610)
T ss_pred HHhhhhhhhHHHHhccC-----CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEe
Confidence 77788887777777653 4589999999999999999999889999999999999999999999999999999999
Q ss_pred cccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccc-hhhhhccCCC
Q 003178 689 DVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPW-EEYFLDDLKD 748 (842)
Q Consensus 689 dv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~-E~~~l~~L~~ 748 (842)
|+++.|+|||++.+|||||.|..++.|+||+|||||.|+.|.+.+|++.. +...+-.|+.
T Consensus 479 DVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~ 539 (610)
T KOG0341|consen 479 DVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKH 539 (610)
T ss_pred cchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999863 4444444444
No 21
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.3e-56 Score=516.73 Aligned_cols=356 Identities=32% Similarity=0.514 Sum_probs=299.8
Q ss_pred cccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEE
Q 003178 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (842)
Q Consensus 380 ~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~L 459 (842)
+|++++|++.++++|.++||..||++|.++||.++.|+|+|++||||||||++|++|+++.+....... ....++++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~--~~~~~~~aL 79 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA--KGRRPVRAL 79 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhccccc--ccCCCceEE
Confidence 589999999999999999999999999999999999999999999999999999999999987543211 112346899
Q ss_pred EeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeee
Q 003178 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (842)
Q Consensus 460 IL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lV 539 (842)
||+|||+||.|+++.+..+.... ++.+..++|+.....+...+. ..++|+|+||++|++++... ...++++++||
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~-~~~~IiV~TP~rL~~~~~~~---~~~l~~v~~lV 154 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLR-GGVDVLVATPGRLLDLEHQN---AVKLDQVEILV 154 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHc-CCCcEEEEChHHHHHHHHcC---CcccccceEEE
Confidence 99999999999999999987654 678888999987765544443 45899999999999988655 35678999999
Q ss_pred ecccccccccccccchhhhhhcccccccceeecccCcchhhc-----cccceeeeecccccccccccccccccccCchhh
Q 003178 540 LDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKIKQSCLVAPHELH 614 (842)
Q Consensus 540 lDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~-----~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k 614 (842)
|||||+|++++|...+..++..++..+|+++||||++..+.. ......+... ........+.+.+..++...+
T Consensus 155 iDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~--~~~~~~~~i~~~~~~~~~~~k 232 (456)
T PRK10590 155 LDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVA--RRNTASEQVTQHVHFVDKKRK 232 (456)
T ss_pred eecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEe--cccccccceeEEEEEcCHHHH
Confidence 999999999999999999999999999999999999986421 1122222111 111223345566666666666
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccC
Q 003178 615 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARG 694 (842)
Q Consensus 615 ~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arG 694 (842)
...+..++.. ....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|
T Consensus 233 ~~~l~~l~~~----~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rG 308 (456)
T PRK10590 233 RELLSQMIGK----GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARG 308 (456)
T ss_pred HHHHHHHHHc----CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcC
Confidence 6666666553 245689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCC
Q 003178 695 MDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 748 (842)
Q Consensus 695 lDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~ 748 (842)
||+|+|++||||++|.++.+|+||+|||||.|..|.|++|+++.|..+++.++.
T Consensus 309 iDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~ 362 (456)
T PRK10590 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEK 362 (456)
T ss_pred CCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988776665544
No 22
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.5e-56 Score=524.55 Aligned_cols=358 Identities=31% Similarity=0.482 Sum_probs=299.0
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
.+|++++|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|+++++....... ......+++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~-~~~~~~~ra 87 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA-DRKPEDPRA 87 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc-ccccCCceE
Confidence 4699999999999999999999999999999999999999999999999999999999999987542110 011123589
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceee
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~l 538 (842)
|||+||++||.|+++.+..+.... ++.+..++|+.....+...+ ..+++|||+||++|++++.... ...+..+++|
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l-~~~~dIiV~TP~rL~~~l~~~~--~~~l~~v~~l 163 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELL-QQGVDVIIATPGRLIDYVKQHK--VVSLHACEIC 163 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHH-hCCCCEEEECHHHHHHHHHhcc--ccchhheeee
Confidence 999999999999999999987654 78899999998876544444 3458999999999999986542 2457789999
Q ss_pred eecccccccccccccchhhhhhcccc--cccceeecccCcchhhccc-----cceeeeecccccccccccccccccccCc
Q 003178 539 VLDEADHLLDLGFRKDVENIVDCLPR--RRQSLLFSATMPKELVLKR-----EHTYIDTVGLGSVETPVKIKQSCLVAPH 611 (842)
Q Consensus 539 VlDEAh~lld~gf~~~i~~Il~~l~~--~~q~il~SATl~~~l~~~~-----~~~~i~~v~~~~~~~~~~l~~~~~~~~~ 611 (842)
||||||+|++++|...+..|+..++. .+|+++||||++..+.... ....+. + .........+.+.++....
T Consensus 164 ViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~-v-~~~~~~~~~i~q~~~~~~~ 241 (572)
T PRK04537 164 VLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLV-V-ETETITAARVRQRIYFPAD 241 (572)
T ss_pred EecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEE-e-ccccccccceeEEEEecCH
Confidence 99999999999999999999999887 7899999999998642111 111110 1 1111233445666666666
Q ss_pred hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccc
Q 003178 612 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 691 (842)
Q Consensus 612 ~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ 691 (842)
..+...+..++.. ....++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 242 ~~k~~~L~~ll~~----~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~ 317 (572)
T PRK04537 242 EEKQTLLLGLLSR----SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVA 317 (572)
T ss_pred HHHHHHHHHHHhc----ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhh
Confidence 7777777776654 246689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCC
Q 003178 692 ARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 747 (842)
Q Consensus 692 arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~ 747 (842)
++|||+|+|++|||||+|.++.+|+||+|||||.|+.|.|++|+++.+...+..++
T Consensus 318 arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~ 373 (572)
T PRK04537 318 ARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIE 373 (572)
T ss_pred hcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988766665553
No 23
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-56 Score=473.87 Aligned_cols=355 Identities=30% Similarity=0.449 Sum_probs=307.1
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
.+|++++|++.+++++.+.||++||-||+.|||.++.|+|+++.|.||||||.||+||+++.++.....+ ....++.+
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa 96 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSA 96 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc--ccccccee
Confidence 6899999999999999999999999999999999999999999999999999999999999999876543 23456789
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCC-ceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 459 LILCPTRELASQIAAEAIALLKNHD-GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~-~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
+||+||||||+|++..+.++..++. .+.+..+....+-.... .+....++|+|+||++|+.++..+.. ..+..+++
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~-~~L~d~pdIvV~TP~~ll~~~~~~~~--~~~~~l~~ 173 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS-VALMDLPDIVVATPAKLLRHLAAGVL--EYLDSLSF 173 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH-HHHccCCCeEEeChHHHHHHHhhccc--hhhhheee
Confidence 9999999999999999999987765 34444444333322222 33345589999999999999987642 45678999
Q ss_pred eeecccccccccccccchhhhhhcccccccceeecccCcchhhcc----ccceeeeecccccccccccccccccccCchh
Q 003178 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLK----REHTYIDTVGLGSVETPVKIKQSCLVAPHEL 613 (842)
Q Consensus 538 lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~----~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~ 613 (842)
+|+||||-++..||.+++..+...+|+..|.++||||+...+... .....+-.........+..+.|+.+.+...+
T Consensus 174 LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~D 253 (569)
T KOG0346|consen 174 LVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEED 253 (569)
T ss_pred EEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccch
Confidence 999999999999999999999999999999999999999885321 1122222233344557788999999999999
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc---
Q 003178 614 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV--- 690 (842)
Q Consensus 614 k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv--- 690 (842)
|+.+++.+++-.+ -.+++|||+||.+.|..+.-.|.+.|+..+.++|.|+..-|..++++|..|-.+||||||.
T Consensus 254 KflllyallKL~L---I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~ 330 (569)
T KOG0346|consen 254 KFLLLYALLKLRL---IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSAD 330 (569)
T ss_pred hHHHHHHHHHHHH---hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccc
Confidence 9999999888655 3579999999999999999999999999999999999999999999999999999999991
Q ss_pred --------------------------------cccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccc
Q 003178 691 --------------------------------SARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPW 738 (842)
Q Consensus 691 --------------------------------~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~ 738 (842)
.+|||||.+|.+|||||+|.++..||||+|||||++++|.++.|+.|.
T Consensus 331 ~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~ 410 (569)
T KOG0346|consen 331 GDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPK 410 (569)
T ss_pred hhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecch
Confidence 359999999999999999999999999999999999999999999998
Q ss_pred hhh
Q 003178 739 EEY 741 (842)
Q Consensus 739 E~~ 741 (842)
|..
T Consensus 411 e~~ 413 (569)
T KOG0346|consen 411 EEF 413 (569)
T ss_pred HHh
Confidence 875
No 24
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-55 Score=516.18 Aligned_cols=362 Identities=32% Similarity=0.491 Sum_probs=318.1
Q ss_pred ccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCce
Q 003178 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (842)
Q Consensus 377 ~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 456 (842)
+.++|.++|++..++..++++||.++|+||.+|||+|+.|+|||.+|.||||||++|+||+|.|+...... ....||
T Consensus 363 pv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~---~~gdGP 439 (997)
T KOG0334|consen 363 PVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPL---EEGDGP 439 (997)
T ss_pred ccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCCh---hhCCCc
Confidence 34779999999999999999999999999999999999999999999999999999999999777655432 234578
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecce
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~ 536 (842)
.+||++|||+||.||++++.+|+.. .++.+++++||.....+...+..+ +.|+|||||++++++....+...+|.++.
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHhcC-CceEEeccchhhhhHhhcCCccccccccc
Confidence 9999999999999999999999987 699999999999998877777766 89999999999999987766666777888
Q ss_pred eeeecccccccccccccchhhhhhcccccccceeecccCcchhhccccc---eeeeecccccccccccccccccccC-ch
Q 003178 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREH---TYIDTVGLGSVETPVKIKQSCLVAP-HE 612 (842)
Q Consensus 537 ~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~---~~i~~v~~~~~~~~~~l~~~~~~~~-~~ 612 (842)
++|+||||+|+++||.+++..|++.+++.+|+++||||+|..+...... ..+..+..........+.+.+.+++ ..
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~ 597 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIEN 597 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCch
Confidence 9999999999999999999999999999999999999999885321111 1111111223334556778888888 78
Q ss_pred hhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccc
Q 003178 613 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 692 (842)
Q Consensus 613 ~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~a 692 (842)
.|+..|..+|..... ..++||||.++..|..+...|.+.++.+..+||+.+|.+|..+++.|+++.+.+||||++++
T Consensus 598 eKf~kL~eLl~e~~e---~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvva 674 (997)
T KOG0334|consen 598 EKFLKLLELLGERYE---DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVA 674 (997)
T ss_pred HHHHHHHHHHHHHhh---cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhh
Confidence 899999999988753 67999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccC
Q 003178 693 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDL 746 (842)
Q Consensus 693 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L 746 (842)
||+|++.+.+|||||+|...++|+||+|||||+|+.|.|++|+.|.+..+...|
T Consensus 675 rGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl 728 (997)
T KOG0334|consen 675 RGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDL 728 (997)
T ss_pred cccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHH
Confidence 999999999999999999999999999999999999999999999665544433
No 25
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.4e-55 Score=514.72 Aligned_cols=358 Identities=27% Similarity=0.435 Sum_probs=295.6
Q ss_pred ccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCce
Q 003178 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (842)
Q Consensus 377 ~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 456 (842)
+..+|.++++++.+++.|.+.||..|||+|.++||.++.|+|++++||||||||++|++|++.++........ ....++
T Consensus 119 pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~-~~~~~~ 197 (518)
T PLN00206 119 PILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHP-SEQRNP 197 (518)
T ss_pred hhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccc-cccCCc
Confidence 3467999999999999999999999999999999999999999999999999999999999998875322111 112456
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecce
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~ 536 (842)
++|||+|||+||.|+++.+..+.... ++.+..++||.....+...+. .+++|+|+|||+|++++... ...+.+++
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l~-~~~~IiV~TPgrL~~~l~~~---~~~l~~v~ 272 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRIQ-QGVELIVGTPGRLIDLLSKH---DIELDNVS 272 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHhc-CCCCEEEECHHHHHHHHHcC---Cccchhee
Confidence 89999999999999999998887654 677888888887665555554 45899999999999999765 35678999
Q ss_pred eeeecccccccccccccchhhhhhcccccccceeecccCcchhhc-----cccceeeeecccccccccccccccccccCc
Q 003178 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKIKQSCLVAPH 611 (842)
Q Consensus 537 ~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~-----~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~ 611 (842)
+|||||||+|+++||+.++..|+..++ .+|+++||||++..+.. ......+.... .......+.+.+..+..
T Consensus 273 ~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~--~~~~~~~v~q~~~~~~~ 349 (518)
T PLN00206 273 VLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGN--PNRPNKAVKQLAIWVET 349 (518)
T ss_pred EEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCcceeEEEEeccc
Confidence 999999999999999999999998885 68999999999987531 11222221111 11122345566666666
Q ss_pred hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHH-HhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc
Q 003178 612 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLRE-MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 690 (842)
Q Consensus 612 ~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~-~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv 690 (842)
..+...+..++.... ....++||||+++..++.++..|.. .++.+..+||++++.+|..+++.|++|+.+|||||++
T Consensus 350 ~~k~~~l~~~l~~~~--~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdv 427 (518)
T PLN00206 350 KQKKQKLFDILKSKQ--HFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGV 427 (518)
T ss_pred hhHHHHHHHHHHhhc--ccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecH
Confidence 667777777776432 1235899999999999999999975 5889999999999999999999999999999999999
Q ss_pred cccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhcc
Q 003178 691 SARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDD 745 (842)
Q Consensus 691 ~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~ 745 (842)
++||||+|+|++||+||+|.++.+|+||+|||||.|..|.+++|+++.+...+..
T Consensus 428 l~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~ 482 (518)
T PLN00206 428 LGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPE 482 (518)
T ss_pred hhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999877654443
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.1e-54 Score=498.40 Aligned_cols=353 Identities=34% Similarity=0.522 Sum_probs=295.4
Q ss_pred cccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEE
Q 003178 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (842)
Q Consensus 380 ~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~L 459 (842)
.|+++++++.++++|.++||..||++|.++|+.++.|+|++++||||+|||++|++|+++++...... ...++++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~----~~~~~~~l 77 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR----KSGPPRIL 77 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc----CCCCceEE
Confidence 59999999999999999999999999999999999999999999999999999999999998753211 12345899
Q ss_pred EeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeee
Q 003178 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (842)
Q Consensus 460 IL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lV 539 (842)
||+||++||.|+++.+..+.... ++.+..++||.........+ ..+++|+|+||++|++++... .+.+.++++||
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~rl~~~~~~~---~~~~~~v~~lV 152 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVF-SENQDIVVATPGRLLQYIKEE---NFDCRAVETLI 152 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHh-cCCCCEEEEChHHHHHHHHcC---CcCcccCCEEE
Confidence 99999999999999999987654 68899999998776544433 345799999999999998765 34578899999
Q ss_pred ecccccccccccccchhhhhhcccccccceeecccCcch-hh-----ccccceeeeecccccccccccccccccccC-ch
Q 003178 540 LDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE-LV-----LKREHTYIDTVGLGSVETPVKIKQSCLVAP-HE 612 (842)
Q Consensus 540 lDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~-l~-----~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~-~~ 612 (842)
|||||+|++++|...+..+...++...|+++||||++.. +. +......+... ........+.+.+.... ..
T Consensus 153 iDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~i~~~~~~~~~~~ 230 (434)
T PRK11192 153 LDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAE--PSRRERKKIHQWYYRADDLE 230 (434)
T ss_pred EECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEec--CCcccccCceEEEEEeCCHH
Confidence 999999999999999999999998899999999999854 21 11111112111 11112233445444443 35
Q ss_pred hhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccc
Q 003178 613 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 692 (842)
Q Consensus 613 ~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~a 692 (842)
.+...+..++.. ....++||||+++..++.++..|+..++.+..+||+|++.+|..+++.|++|++.|||||++++
T Consensus 231 ~k~~~l~~l~~~----~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~ 306 (434)
T PRK11192 231 HKTALLCHLLKQ----PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAA 306 (434)
T ss_pred HHHHHHHHHHhc----CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccc
Confidence 566667666653 2456999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCC
Q 003178 693 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 747 (842)
Q Consensus 693 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~ 747 (842)
+|||+|+|++|||||+|.+...|+||+|||||.|..|.|++|+...|..++..++
T Consensus 307 ~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~ 361 (434)
T PRK11192 307 RGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIE 361 (434)
T ss_pred cCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877666554
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-54 Score=501.55 Aligned_cols=360 Identities=33% Similarity=0.541 Sum_probs=301.0
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
...|.++++++.++++|.++||..||++|.++|+.++.|+|+|++|+||||||++|++|+++.+....... .......+
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~-~~~~~~~~ 164 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK-ERYMGEPR 164 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc-ccccCCce
Confidence 35689999999999999999999999999999999999999999999999999999999999987653211 11122458
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
+|||+||++||.|+++.+..+.... ++.+..++||.+...+...+....++|+|+||++|++++... ...+.++++
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~---~~~l~~l~~ 240 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG---EVHLDMVEV 240 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC---CcccccCce
Confidence 9999999999999999999987654 688889999987766666666667899999999999887654 356789999
Q ss_pred eeecccccccccccccchhhhhhcccc--cccceeecccCcchhhcc-----ccceeeeecccccccccccccccccccC
Q 003178 538 LVLDEADHLLDLGFRKDVENIVDCLPR--RRQSLLFSATMPKELVLK-----REHTYIDTVGLGSVETPVKIKQSCLVAP 610 (842)
Q Consensus 538 lVlDEAh~lld~gf~~~i~~Il~~l~~--~~q~il~SATl~~~l~~~-----~~~~~i~~v~~~~~~~~~~l~~~~~~~~ 610 (842)
|||||||++++++|...+..|+..++. .+|++++|||++..+... .....+... . .......+.+.+..+.
T Consensus 241 lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~-~-~~~~~~~~~~~~~~~~ 318 (475)
T PRK01297 241 MVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIE-P-ENVASDTVEQHVYAVA 318 (475)
T ss_pred EEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEec-c-CcCCCCcccEEEEEec
Confidence 999999999999999999999988864 579999999998764211 111111111 0 1111223445555566
Q ss_pred chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc
Q 003178 611 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 690 (842)
Q Consensus 611 ~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv 690 (842)
...+...+..++... ...++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|++.|||||++
T Consensus 319 ~~~k~~~l~~ll~~~----~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~ 394 (475)
T PRK01297 319 GSDKYKLLYNLVTQN----PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDV 394 (475)
T ss_pred chhHHHHHHHHHHhc----CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccc
Confidence 667777777776542 4568999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCC
Q 003178 691 SARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 748 (842)
Q Consensus 691 ~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~ 748 (842)
+++|||||+|++||+||+|.++.+|+||+|||||.|+.|.+++|+.+.|.+++..++.
T Consensus 395 l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~ 452 (475)
T PRK01297 395 AGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEE 452 (475)
T ss_pred cccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988877777654
No 28
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-55 Score=469.88 Aligned_cols=361 Identities=32% Similarity=0.467 Sum_probs=312.7
Q ss_pred cccccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCccccc
Q 003178 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLV 453 (842)
Q Consensus 374 ~~~~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~ 453 (842)
+..+.++|+.++++..|+.++.+..|.+|||+|.+++|..++|+||+-+|.||||||.||+.|++-+++....- ...
T Consensus 218 ~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL---~~g 294 (731)
T KOG0339|consen 218 PPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPEL---KPG 294 (731)
T ss_pred CCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhh---cCC
Confidence 34456789999999999999999999999999999999999999999999999999999999999999876432 123
Q ss_pred CceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEe
Q 003178 454 PPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 454 ~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
.++.+||+||||+||.|++.+++++++.+ ++++++++||.....+...|. .++.|||||||||++++.-. ..++.
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk-~g~EivVaTPgRlid~VkmK---atn~~ 369 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQSKELK-EGAEIVVATPGRLIDMVKMK---ATNLS 369 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHHHhhh-cCCeEEEechHHHHHHHHhh---cccce
Confidence 56789999999999999999999998776 899999999999887777777 67999999999999999766 46788
Q ss_pred cceeeeecccccccccccccchhhhhhcccccccceeecccCcchhhccccceeeeec---ccccccccccccccccccC
Q 003178 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTV---GLGSVETPVKIKQSCLVAP 610 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~i~~v---~~~~~~~~~~l~~~~~~~~ 610 (842)
++.+|||||||+|.++||..++..|...+.+++|+|+||||++..+.-.....+.+.+ ..........+.|.+.+++
T Consensus 370 rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~ 449 (731)
T KOG0339|consen 370 RVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCP 449 (731)
T ss_pred eeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeecc
Confidence 9999999999999999999999999999999999999999999886432222222222 2222334556777777776
Q ss_pred ch-hhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc
Q 003178 611 HE-LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 689 (842)
Q Consensus 611 ~~-~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd 689 (842)
.+ .|+..|..-|... ...+++|||+.-...++.+...|+-.+++|..+||.|.|.+|.+++..|+.+...|||+||
T Consensus 450 s~~~Kl~wl~~~L~~f---~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatD 526 (731)
T KOG0339|consen 450 SEEKKLNWLLRHLVEF---SSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATD 526 (731)
T ss_pred CcHHHHHHHHHHhhhh---ccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEee
Confidence 54 5666555544443 3567999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhcc
Q 003178 690 VSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDD 745 (842)
Q Consensus 690 v~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~ 745 (842)
+++||+|||.+..|||||+-.+++.|+||+||+||+|..|.+++++++.|..|.-.
T Consensus 527 vaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~ 582 (731)
T KOG0339|consen 527 VAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGH 582 (731)
T ss_pred HhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhH
Confidence 99999999999999999999999999999999999999999999999998766543
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.1e-51 Score=468.78 Aligned_cols=352 Identities=31% Similarity=0.488 Sum_probs=288.6
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
..+|+++++++.++++|.++||..|+|+|.++|+.+++++|++++||||||||++|++|+++.+.... .+.+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~--------~~~~ 98 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDL--------NACQ 98 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCC--------CCce
Confidence 46799999999999999999999999999999999999999999999999999999999998764221 2347
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
+|||+||++||.|+.+.+..+.... .+.+..++|+.....+...+.. +++|+|+||++|.+++... ...+.++++
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~---~~~l~~i~l 173 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLKA-GVHMVVGTPGRVYDMIDKR---HLRVDDLKL 173 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHHcC-CCCEEEECcHHHHHHHHhC---CcccccccE
Confidence 9999999999999999988887543 5667778888766544444443 4799999999999988765 245789999
Q ss_pred eeecccccccccccccchhhhhhcccccccceeecccCcchhhcc-----ccceeeeecccccccccccccccccccCc-
Q 003178 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLK-----REHTYIDTVGLGSVETPVKIKQSCLVAPH- 611 (842)
Q Consensus 538 lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~-----~~~~~i~~v~~~~~~~~~~l~~~~~~~~~- 611 (842)
|||||||++++.+|...+..++..+++..|++++|||+|+.+... .....+. +. ........+.+.+.....
T Consensus 174 vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 251 (401)
T PTZ00424 174 FILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRIL-VK-KDELTLEGIRQFYVAVEKE 251 (401)
T ss_pred EEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEE-eC-CCCcccCCceEEEEecChH
Confidence 999999999999999999999999999999999999999874211 1111111 11 111122334444444433
Q ss_pred hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccc
Q 003178 612 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 691 (842)
Q Consensus 612 ~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ 691 (842)
..+...+..++.. ....++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++
T Consensus 252 ~~~~~~l~~~~~~----~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l 327 (401)
T PTZ00424 252 EWKFDTLCDLYET----LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLL 327 (401)
T ss_pred HHHHHHHHHHHHh----cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccc
Confidence 3344555554443 245689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCC
Q 003178 692 ARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 748 (842)
Q Consensus 692 arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~ 748 (842)
++|||+|++++||+||+|.+...|+||+|||||.|+.|.|++|+++.+..++..+++
T Consensus 328 ~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~ 384 (401)
T PTZ00424 328 ARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIER 384 (401)
T ss_pred cCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988776665543
No 30
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-51 Score=440.15 Aligned_cols=356 Identities=30% Similarity=0.448 Sum_probs=289.4
Q ss_pred cccccCCCchhHh----------hhcccceeeeeehhhhhhhhhhc---------CcceEEeeccCCCceeeehhHHHHH
Q 003178 380 RFDECGISPLTIK----------ALTAAGYIQMTRVQEATLSACLE---------GKDAVVKAKTGTGKSIAFLLPAIEA 440 (842)
Q Consensus 380 ~F~~l~l~~~l~~----------~L~~~g~~~~t~iQ~~aI~~il~---------g~dvii~A~TGSGKTlafllPil~~ 440 (842)
.|+.+++++.+.. +|.++++....|+|.+++|.++. .+|++|.||||||||+||.|||++.
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~ 207 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQL 207 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHH
Confidence 3566666555444 48899999999999999999863 5899999999999999999999998
Q ss_pred HHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCc----eEEecCcc
Q 003178 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPC----QILVATPG 516 (842)
Q Consensus 441 l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~----~IIVaTPg 516 (842)
+.... ...++||||+||++|+.|+++.|..+.... ++.|+.+.|..+...+...+..... +|+|+|||
T Consensus 208 L~~R~-------v~~LRavVivPtr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPG 279 (620)
T KOG0350|consen 208 LSSRP-------VKRLRAVVIVPTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPG 279 (620)
T ss_pred HccCC-------ccceEEEEEeeHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCch
Confidence 86543 234799999999999999999999998654 8889999999998888888876655 99999999
Q ss_pred chhhhccccCCceEEEecceeeeecccccccccccccchhhhhhcc----------------------------------
Q 003178 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL---------------------------------- 562 (842)
Q Consensus 517 rLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l---------------------------------- 562 (842)
||.+||.+..+ +.|++++++||||||+|++..|...+..+...+
T Consensus 280 RLVDHl~~~k~--f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~ 357 (620)
T KOG0350|consen 280 RLVDHLNNTKS--FDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKL 357 (620)
T ss_pred HHHHhccCCCC--cchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCc
Confidence 99999997664 568899999999999999877666554443222
Q ss_pred cccccceeecccCcch------hhccccceeeee-cccccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEE
Q 003178 563 PRRRQSLLFSATMPKE------LVLKREHTYIDT-VGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVI 635 (842)
Q Consensus 563 ~~~~q~il~SATl~~~------l~~~~~~~~i~~-v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiI 635 (842)
.+..+.++||||+... +.+.....+... ........|..+.+.++++....+-..+..++... ...++|
T Consensus 358 ~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~----k~~r~l 433 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN----KLNRTL 433 (620)
T ss_pred CchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh----hcceEE
Confidence 1223567889988654 122221111111 11234556778888888888777777777777654 456999
Q ss_pred EEecchhHHHHHHHHHH----HHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCCC
Q 003178 636 VFCSTGMVTSLLYLLLR----EMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPD 711 (842)
Q Consensus 636 VF~~s~~~~~~l~~~L~----~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s 711 (842)
+|+++...+.+++..|+ ..++.+..+.|.++.+.|.+.++.|..|++.||||||+++||||+.+|+.|||||+|.+
T Consensus 434 cf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~ 513 (620)
T KOG0350|consen 434 CFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPAS 513 (620)
T ss_pred EEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCch
Confidence 99999999999999887 33678889999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCCCCCcceeEEeccchh-hhhccCCCC
Q 003178 712 REQYIHRLGRTGREGKEGEGVLLLAPWEE-YFLDDLKDL 749 (842)
Q Consensus 712 ~~~yiQRiGRaGR~G~~G~~i~ll~~~E~-~~l~~L~~~ 749 (842)
...|+||+|||||+|+.|.|+.++...+. .|.+.|++.
T Consensus 514 ~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 514 DKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred hhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHh
Confidence 99999999999999999999999998775 566666543
No 31
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-51 Score=436.26 Aligned_cols=356 Identities=33% Similarity=0.489 Sum_probs=313.2
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
-.|..+||+..+++++.+.||..|||+|+++||.+|.++|++..|.||||||.||++|+++++.... ..+.++
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-------~~g~Ra 93 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLRA 93 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-------ccccce
Confidence 5699999999999999999999999999999999999999999999999999999999999987543 356789
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceee
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~l 538 (842)
||++|||+||.|..+.++.+.... ++.+.+++||.+...+...+..+ +|||+||||+++.+...- .+.|+.++||
T Consensus 94 lilsptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~n-pDii~ATpgr~~h~~vem---~l~l~sveyV 168 (529)
T KOG0337|consen 94 LILSPTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILLNEN-PDIIIATPGRLLHLGVEM---TLTLSSVEYV 168 (529)
T ss_pred eeccCcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHhccC-CCEEEecCceeeeeehhe---eccccceeee
Confidence 999999999999999999987654 78899999999887666666544 799999999998776544 4678899999
Q ss_pred eecccccccccccccchhhhhhcccccccceeecccCcchhhccccceeeeecccc---cccccccccccccccCchhhH
Q 003178 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLG---SVETPVKIKQSCLVAPHELHF 615 (842)
Q Consensus 539 VlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~i~~v~~~---~~~~~~~l~~~~~~~~~~~k~ 615 (842)
|+||||+|+.+||.+++..++..+|..+|+++||||+|..+.-+......+++-+. .......++..+..+....|.
T Consensus 169 VfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~ 248 (529)
T KOG0337|consen 169 VFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKE 248 (529)
T ss_pred eehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHH
Confidence 99999999999999999999999999999999999999886443332222222111 123345567777888899999
Q ss_pred HHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCC
Q 003178 616 QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGM 695 (842)
Q Consensus 616 ~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGl 695 (842)
..|..++..... +.++||||+|..+++.+...|+..|+.+..++|.|.+..|...+..|..++..+||.||+++||+
T Consensus 249 aaLl~il~~~~~---~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~ 325 (529)
T KOG0337|consen 249 AALLSILGGRIK---DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGL 325 (529)
T ss_pred HHHHHHHhcccc---ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccC
Confidence 999999987753 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCCC
Q 003178 696 DYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKDL 749 (842)
Q Consensus 696 Dip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~~ 749 (842)
|||..+.|||||.|.+..-|+||+||++|+|+.|.+|.|+.+.+..++-.|...
T Consensus 326 diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lf 379 (529)
T KOG0337|consen 326 DIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLF 379 (529)
T ss_pred CCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhh
Confidence 999999999999999999999999999999999999999999998877766553
No 32
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-50 Score=421.36 Aligned_cols=351 Identities=31% Similarity=0.440 Sum_probs=292.5
Q ss_pred cccccccccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcC--cceEEeeccCCCceeeehhHHHHHHHhhccc
Q 003178 370 REEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSS 447 (842)
Q Consensus 370 ~~~~~~~~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g--~dvii~A~TGSGKTlafllPil~~l~~~~~~ 447 (842)
+...|+.+.++|++|.|.|+++++|..|+|.+|+.||+.|+|.++.. +++|.++..|+|||.||.|.+|.++--.
T Consensus 81 dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--- 157 (477)
T KOG0332|consen 81 DPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--- 157 (477)
T ss_pred CCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc---
Confidence 36678899999999999999999999999999999999999999985 7999999999999999999998766332
Q ss_pred CcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCC
Q 003178 448 STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG 527 (842)
Q Consensus 448 ~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~ 527 (842)
..-+.+|+|+|||+||.|+.+++.++.++. ++...+..-+..... -..+ ..+|+|+|||.+.+++..-.
T Consensus 158 -----~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~r-G~~i---~eqIviGTPGtv~Dlm~klk- 226 (477)
T KOG0332|consen 158 -----VVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKR-GNKL---TEQIVIGTPGTVLDLMLKLK- 226 (477)
T ss_pred -----ccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCccccc-CCcc---hhheeeCCCccHHHHHHHHH-
Confidence 223468999999999999999999998876 777777766653221 1111 26899999999999987622
Q ss_pred ceEEEecceeeeecccccccc-cccccchhhhhhcccccccceeecccCcchhhccccceeee--eccc-cccccccccc
Q 003178 528 LSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYID--TVGL-GSVETPVKIK 603 (842)
Q Consensus 528 ~~~~L~~l~~lVlDEAh~lld-~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~i~--~v~~-~~~~~~~~l~ 603 (842)
.+.+..++++|+||||.|++ .||.++-..|...+|+..|+++||||....+.........+ .+.+ ........+.
T Consensus 227 -~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~Ik 305 (477)
T KOG0332|consen 227 -CIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIK 305 (477)
T ss_pred -hhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchh
Confidence 35678899999999999996 67999999999999999999999999876642111111000 1111 2233456788
Q ss_pred ccccccCc-hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcce
Q 003178 604 QSCLVAPH-ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKR 682 (842)
Q Consensus 604 ~~~~~~~~-~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~ 682 (842)
|+|+.|+. +.|++.|.++..-. .-+..||||.|++.+..++..|.+.|+.|..+||.|.-.+|..++..|+.|+.
T Consensus 306 Qlyv~C~~~~~K~~~l~~lyg~~----tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~ 381 (477)
T KOG0332|consen 306 QLYVLCACRDDKYQALVNLYGLL----TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKE 381 (477)
T ss_pred hheeeccchhhHHHHHHHHHhhh----hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcc
Confidence 88888876 56888888754432 34689999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccCCCCCCcceeEEecCCC------ChHHHHHHhhcCCCCCCCcceeEEeccch
Q 003178 683 LILVTSDVSARGMDYPDVTSVVQVGIPP------DREQYIHRLGRTGREGKEGEGVLLLAPWE 739 (842)
Q Consensus 683 ~VLVaTdv~arGlDip~V~~VI~yd~P~------s~~~yiQRiGRaGR~G~~G~~i~ll~~~E 739 (842)
+|||+|+|++||||++.|++|||||+|. +++.|+||+|||||.|+.|.++-|+...+
T Consensus 382 kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 382 KVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred eEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccC
Confidence 9999999999999999999999999994 78999999999999999999999887643
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=6.6e-50 Score=481.52 Aligned_cols=341 Identities=22% Similarity=0.287 Sum_probs=262.9
Q ss_pred CCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccc
Q 003178 385 GISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (842)
Q Consensus 385 ~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PT 464 (842)
.+++.+.++|.++||..||++|.++|+.+++|+|+++++|||||||+||++|+++.+.... +.++|||+||
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~---------~~~aL~l~Pt 90 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP---------RATALYLAPT 90 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC---------CcEEEEEcCh
Confidence 3789999999999999999999999999999999999999999999999999999987531 3479999999
Q ss_pred hhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhh-ccccCCceEEEecceeeeeccc
Q 003178 465 RELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDH-IENKSGLSVRLMGLKMLVLDEA 543 (842)
Q Consensus 465 ReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~-L~~~~~~~~~L~~l~~lVlDEA 543 (842)
|+||.|+.+.+..+. ..++.+..+.|++... +...+. ..++|+|+||++|... +.....+...++++++||||||
T Consensus 91 raLa~q~~~~l~~l~--~~~i~v~~~~Gdt~~~-~r~~i~-~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 91 KALAADQLRAVRELT--LRGVRPATYDGDTPTE-ERRWAR-EHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred HHHHHHHHHHHHHhc--cCCeEEEEEeCCCCHH-HHHHHh-cCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 999999999999886 3467888887876643 223333 3479999999998743 3222222233688999999999
Q ss_pred ccccccccccchhhhhhcc-------cccccceeecccCcchhhcccccee--eeecccccccccccccccccccC----
Q 003178 544 DHLLDLGFRKDVENIVDCL-------PRRRQSLLFSATMPKELVLKREHTY--IDTVGLGSVETPVKIKQSCLVAP---- 610 (842)
Q Consensus 544 h~lld~gf~~~i~~Il~~l-------~~~~q~il~SATl~~~l~~~~~~~~--i~~v~~~~~~~~~~l~~~~~~~~---- 610 (842)
|++.+. |...+..++..+ +.++|+++||||+++.......... ...+... ..+....+..+..+
T Consensus 167 h~~~g~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~--~~~~~~~~~~~~~p~~~~ 243 (742)
T TIGR03817 167 HSYRGV-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTED--GSPRGARTVALWEPPLTE 243 (742)
T ss_pred hhccCc-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCC--CCCcCceEEEEecCCccc
Confidence 999874 777766555443 4578999999999887432211000 0111111 11111111111111
Q ss_pred -------------chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH--------hhhHHHHhhcCcchh
Q 003178 611 -------------HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--------KMNVREMYSRKPQLY 669 (842)
Q Consensus 611 -------------~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~--------~~~v~~lhg~~~~~~ 669 (842)
...+...+..++. .+.++||||+|++.++.++..|+.. +..+..+||++++.+
T Consensus 244 ~~~~~~~~~r~~~~~~~~~~l~~l~~------~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~e 317 (742)
T TIGR03817 244 LTGENGAPVRRSASAEAADLLADLVA------EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPED 317 (742)
T ss_pred cccccccccccchHHHHHHHHHHHHH------CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHH
Confidence 1123344444443 2468999999999999999998764 567899999999999
Q ss_pred hhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEec--cchhhhhccCC
Q 003178 670 RDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLA--PWEEYFLDDLK 747 (842)
Q Consensus 670 R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~--~~E~~~l~~L~ 747 (842)
|..+++.|++|++++||||+++++|||||+|++||+||.|.+..+|+||+|||||.|+.|.++++.. +.|.+++..++
T Consensus 318 R~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~ 397 (742)
T TIGR03817 318 RRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPE 397 (742)
T ss_pred HHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 56777766554
No 34
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-50 Score=423.82 Aligned_cols=350 Identities=32% Similarity=0.509 Sum_probs=306.0
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
.+|++++|.+++++.+...||++|+.||+.||..+..|.|+++++.+|+|||.+|++++++.+--.. ....+
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~--------ke~qa 97 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV--------KETQA 97 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch--------HHHHH
Confidence 3799999999999999999999999999999999999999999999999999999999998873211 22368
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceee
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~l 538 (842)
|+++|||+||.|+.++...+... .+..+..++||..+..+...+....++|+|+|||++.+.+... .+....++++
T Consensus 98 lilaPtreLa~qi~~v~~~lg~~-~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~---~l~~~~iKmf 173 (397)
T KOG0327|consen 98 LILAPTRELAQQIQKVVRALGDH-MDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG---SLSTDGIKMF 173 (397)
T ss_pred HHhcchHHHHHHHHHHHHhhhcc-cceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc---cccccceeEE
Confidence 99999999999999777776554 4889999999999886766677777899999999999999766 3556789999
Q ss_pred eecccccccccccccchhhhhhcccccccceeecccCcchhhcc-----ccceeeeecccccccccccccccccccCchh
Q 003178 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLK-----REHTYIDTVGLGSVETPVKIKQSCLVAPHEL 613 (842)
Q Consensus 539 VlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~-----~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~ 613 (842)
|+||||.|+..||.+++..|...+|++.|++++|||+|.++... .++..+. +. ....+...+.|+|+.+..+.
T Consensus 174 vlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~-vk-k~~ltl~gikq~~i~v~k~~ 251 (397)
T KOG0327|consen 174 VLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRIL-VK-KDELTLEGIKQFYINVEKEE 251 (397)
T ss_pred eecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEE-ec-chhhhhhheeeeeeeccccc
Confidence 99999999999999999999999999999999999999985322 1111111 11 11234566788888888888
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccccc
Q 003178 614 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSAR 693 (842)
Q Consensus 614 k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ar 693 (842)
|+..|+.+... -.+.+|||||++.+..+...|...++.+..+|+.|.+.+|..+...|+.|..+|||+|+.++|
T Consensus 252 k~~~l~dl~~~------~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~ar 325 (397)
T KOG0327|consen 252 KLDTLCDLYRR------VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLAR 325 (397)
T ss_pred cccHHHHHHHh------hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecccccc
Confidence 99999988872 247899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCC
Q 003178 694 GMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 748 (842)
Q Consensus 694 GlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~ 748 (842)
|||+..+..||+|++|...+.|+||+||+||.|++|.++.+++..+...++.+++
T Consensus 326 gidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~ 380 (397)
T KOG0327|consen 326 GIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEK 380 (397)
T ss_pred ccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHH
Confidence 9999999999999999999999999999999999999999999988877776654
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2.6e-49 Score=436.48 Aligned_cols=344 Identities=31% Similarity=0.478 Sum_probs=300.2
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
...|+++-|...++..|...+|..||+||..|||+++++-|+||+|..|+|||++|.+.+++.+.... ..+.
T Consensus 24 ~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~--------~~~q 95 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS--------SHIQ 95 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc--------Ccce
Confidence 45699999999999999999999999999999999999999999999999999999999988765432 3357
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
++||+||||+|.||.+.+..++..+.++.+.+++||+....+..++.. ++|+|+|||||..++..+ .++..++++
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~--~rIvIGtPGRi~qL~el~---~~n~s~vrl 170 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ--TRIVIGTPGRIAQLVELG---AMNMSHVRL 170 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh--ceEEecCchHHHHHHHhc---CCCccceeE
Confidence 999999999999999999999998889999999999999888777765 799999999999999877 467889999
Q ss_pred eeecccccccc-cccccchhhhhhcccccccceeecccCcchhh-----ccccceeeeecccccccccccccccccccCc
Q 003178 538 LVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKIKQSCLVAPH 611 (842)
Q Consensus 538 lVlDEAh~lld-~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~-----~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~ 611 (842)
+||||||.|++ ..|..++..|++.+|+.+|++.||||.|..+. ..+++.++..-. .......++|+++..+.
T Consensus 171 fVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~--~d~~L~GikQyv~~~~s 248 (980)
T KOG4284|consen 171 FVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNA--DDVQLFGIKQYVVAKCS 248 (980)
T ss_pred EEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeeccc--CCceeechhheeeeccC
Confidence 99999999998 55999999999999999999999999998853 223333332211 12234457777766543
Q ss_pred h--------hhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceE
Q 003178 612 E--------LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRL 683 (842)
Q Consensus 612 ~--------~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~ 683 (842)
. .|++.|..++..+ +-.+.||||+....|+-++.+|...|+.|-++.|.|+|.+|..+++.++.-.++
T Consensus 249 ~nnsveemrlklq~L~~vf~~i----py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~r 324 (980)
T KOG4284|consen 249 PNNSVEEMRLKLQKLTHVFKSI----PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVR 324 (980)
T ss_pred CcchHHHHHHHHHHHHHHHhhC----chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEE
Confidence 2 3556666666543 556899999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchh
Q 003178 684 ILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 740 (842)
Q Consensus 684 VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~ 740 (842)
|||+||..+||||-++|++|||.|+|.+...|.||||||||.|..|.+++|+...+.
T Consensus 325 ILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 325 ILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred EEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999999999999999999987543
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.8e-47 Score=457.58 Aligned_cols=342 Identities=19% Similarity=0.230 Sum_probs=252.3
Q ss_pred cccc--cCCCchhHhhhcc-cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCce
Q 003178 380 RFDE--CGISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (842)
Q Consensus 380 ~F~~--l~l~~~l~~~L~~-~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 456 (842)
.|.. ++....+...++. +||..++|+|.++|++++.|+|+|+++|||+|||+||+||++.. . .
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---~-----------G 501 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---P-----------G 501 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---C-----------C
Confidence 3553 4445555555553 79999999999999999999999999999999999999999732 1 1
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeecccccc---C--CCceEEecCccchhh--hccccCCce
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLE---S--DPCQILVATPGRLLD--HIENKSGLS 529 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~---~--~~~~IIVaTPgrLl~--~L~~~~~~~ 529 (842)
.+|||+|+++|+.++...+... ++.+..+.++.........+. . +.++|||+||++|.. .+.......
T Consensus 502 iTLVISPLiSLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L 576 (1195)
T PLN03137 502 ITLVISPLVSLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENL 576 (1195)
T ss_pred cEEEEeCHHHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhh
Confidence 5899999999998665555442 678888888876543332221 1 458999999999863 121110000
Q ss_pred EEEecceeeeecccccccccc--cccchhhh--hhcccccccceeecccCcchhhc--cccceeeeeccccccccccccc
Q 003178 530 VRLMGLKMLVLDEADHLLDLG--FRKDVENI--VDCLPRRRQSLLFSATMPKELVL--KREHTYIDTVGLGSVETPVKIK 603 (842)
Q Consensus 530 ~~L~~l~~lVlDEAh~lld~g--f~~~i~~I--l~~l~~~~q~il~SATl~~~l~~--~~~~~~i~~v~~~~~~~~~~l~ 603 (842)
.....+.+|||||||++++|| |++.+..+ +....+..|+++||||++..+.. ............... ..+..
T Consensus 577 ~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S--f~RpN 654 (1195)
T PLN03137 577 NSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS--FNRPN 654 (1195)
T ss_pred hhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc--cCccc
Confidence 112358899999999999998 78877654 33334568899999999886321 000000111000000 01111
Q ss_pred ccccccCchh-hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcce
Q 003178 604 QSCLVAPHEL-HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKR 682 (842)
Q Consensus 604 ~~~~~~~~~~-k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~ 682 (842)
..|.+.+... ....+..++... ..+...||||.|++.|+.++..|...|+.+..|||+|++.+|..+++.|..|++
T Consensus 655 L~y~Vv~k~kk~le~L~~~I~~~---~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei 731 (1195)
T PLN03137 655 LWYSVVPKTKKCLEDIDKFIKEN---HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEI 731 (1195)
T ss_pred eEEEEeccchhHHHHHHHHHHhc---ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCC
Confidence 2233333322 234455555432 234578999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhcc
Q 003178 683 LILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDD 745 (842)
Q Consensus 683 ~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~ 745 (842)
.|||||++++||||+|+|++||||++|.+++.|+||+|||||.|.+|.|++|+++.|...++.
T Consensus 732 ~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~ 794 (1195)
T PLN03137 732 NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKH 794 (1195)
T ss_pred cEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999877644443
No 37
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-47 Score=419.25 Aligned_cols=360 Identities=25% Similarity=0.367 Sum_probs=286.1
Q ss_pred ccccc----cCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccC
Q 003178 379 KRFDE----CGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP 454 (842)
Q Consensus 379 ~~F~~----l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~ 454 (842)
.+|.+ +..++.+++.+...+|..|+|+|.+|||.++.++|++.|||||||||++|++|+++++..... .....
T Consensus 132 ~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~---~~~~~ 208 (593)
T KOG0344|consen 132 LSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ---EKHKV 208 (593)
T ss_pred ccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc---ccCcc
Confidence 45665 578999999999999999999999999999999999999999999999999999999987543 22345
Q ss_pred ceEEEEeccchhHHHHHHHHHHHhh--hcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEE
Q 003178 455 PIYVLILCPTRELASQIAAEAIALL--KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (842)
Q Consensus 455 ~~~~LIL~PTReLA~Qi~~~l~~l~--~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L 532 (842)
+.+++|+.|||+||.|++.++.++. ... ++.+..+............+....++|+|.||-++..++.... ....+
T Consensus 209 gl~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~-~~idl 286 (593)
T KOG0344|consen 209 GLRALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGK-LNIDL 286 (593)
T ss_pred ceEEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCC-ccchh
Confidence 7899999999999999999999986 221 2233333222211112222222348999999999999987652 12578
Q ss_pred ecceeeeeccccccccc-ccccchhhhhhccc-ccccceeecccCcchhhc----cccceeeeecccccccccccccccc
Q 003178 533 MGLKMLVLDEADHLLDL-GFRKDVENIVDCLP-RRRQSLLFSATMPKELVL----KREHTYIDTVGLGSVETPVKIKQSC 606 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~-gf~~~i~~Il~~l~-~~~q~il~SATl~~~l~~----~~~~~~i~~v~~~~~~~~~~l~~~~ 606 (842)
.++.++|+||||++.+. +|..++..|+..+. +...+-+||||++..+.- .......-.++..... ...+.|..
T Consensus 287 ~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa-~~~V~Qel 365 (593)
T KOG0344|consen 287 SKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSA-NETVDQEL 365 (593)
T ss_pred heeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhH-hhhhhhhh
Confidence 89999999999999998 89999999987654 467788999999987421 1111111122222221 33455555
Q ss_pred cccC-chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHH-HHHhhhHHHHhhcCcchhhhhhhHHHhhcceEE
Q 003178 607 LVAP-HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLL-REMKMNVREMYSRKPQLYRDRISEEFRASKRLI 684 (842)
Q Consensus 607 ~~~~-~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L-~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~V 684 (842)
+.+. ...|+..+..++...+ ..++|||+.+.+.+..|+..| .--++.+..+||..++.+|..++++|+.|++.|
T Consensus 366 vF~gse~~K~lA~rq~v~~g~----~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iwv 441 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGF----KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWV 441 (593)
T ss_pred eeeecchhHHHHHHHHHhccC----CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeE
Confidence 5544 4567777777777653 458999999999999999999 556899999999999999999999999999999
Q ss_pred EEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCC
Q 003178 685 LVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 748 (842)
Q Consensus 685 LVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~ 748 (842)
|+||++++||+|+.+|+.|||||+|.+..+|+||+||+||+|+.|+||+||+..+..+++-+..
T Consensus 442 LicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae 505 (593)
T KOG0344|consen 442 LICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAE 505 (593)
T ss_pred EEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHH
Confidence 9999999999999999999999999999999999999999999999999999988777765543
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.8e-46 Score=431.13 Aligned_cols=322 Identities=20% Similarity=0.270 Sum_probs=242.6
Q ss_pred ccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHH
Q 003178 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (842)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l 475 (842)
.+||..|+|+|.++|+.+++|+|+++++|||||||++|++|++.. . ..+|||+||++|+.|++..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~---~-----------~~~lVi~P~~~L~~dq~~~l 71 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS---D-----------GITLVISPLISLMEDQVLQL 71 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc---C-----------CcEEEEecHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999998731 1 15899999999999998888
Q ss_pred HHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccc--
Q 003178 476 IALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-- 550 (842)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~g-- 550 (842)
..+ ++.+..+.++...... ...+..+.++|+|+||+++......... .....++++|||||||++++||
T Consensus 72 ~~~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~-l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 72 KAS-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQT-LEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHH-HHhcCCcCEEEEeCCcccCccccc
Confidence 754 5666666666543211 1223345589999999998643210000 0034678999999999999988
Q ss_pred cccchhhhh--hcccccccceeecccCcchhhcc------ccceeeeecccccccccccccccccccCc-hhhHHHHHHH
Q 003178 551 FRKDVENIV--DCLPRRRQSLLFSATMPKELVLK------REHTYIDTVGLGSVETPVKIKQSCLVAPH-ELHFQILHHL 621 (842)
Q Consensus 551 f~~~i~~Il--~~l~~~~q~il~SATl~~~l~~~------~~~~~i~~v~~~~~~~~~~l~~~~~~~~~-~~k~~~L~~l 621 (842)
|+..+..+. ....+..++++||||+++.+... .....+...... ..++ .+.+... ......+..+
T Consensus 146 fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~----r~nl--~~~v~~~~~~~~~~l~~~ 219 (470)
T TIGR00614 146 FRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD----RPNL--YYEVRRKTPKILEDLLRF 219 (470)
T ss_pred cHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC----CCCc--EEEEEeCCccHHHHHHHH
Confidence 666665542 22224678999999998863210 000111000000 0111 1111111 1333444444
Q ss_pred HhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcc
Q 003178 622 LKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVT 701 (842)
Q Consensus 622 L~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~ 701 (842)
+... .++..+||||+|++.++.++..|+..++.+..+||+|++.+|..+++.|++|++.|||||+++++|||+|+|+
T Consensus 220 l~~~---~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~ 296 (470)
T TIGR00614 220 IRKE---FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVR 296 (470)
T ss_pred HHHh---cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccce
Confidence 4432 2445679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccC
Q 003178 702 SVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDL 746 (842)
Q Consensus 702 ~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L 746 (842)
+||||++|.+++.|+||+|||||.|..|.|++|+++.|...++.+
T Consensus 297 ~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~ 341 (470)
T TIGR00614 297 FVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRL 341 (470)
T ss_pred EEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHH
Confidence 999999999999999999999999999999999999887665544
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6.2e-45 Score=432.09 Aligned_cols=327 Identities=20% Similarity=0.291 Sum_probs=246.9
Q ss_pred CchhHhhhcc-cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccch
Q 003178 387 SPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (842)
Q Consensus 387 ~~~l~~~L~~-~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTR 465 (842)
.....+.|++ +||..++|+|.++|+.+++|+|+++++|||+|||+||++|++.. . ..+|||+|++
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---~-----------g~tlVisPl~ 75 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---D-----------GLTLVVSPLI 75 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---C-----------CCEEEEecHH
Confidence 3334444543 69999999999999999999999999999999999999999732 1 1489999999
Q ss_pred hHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEecceeeeecc
Q 003178 466 ELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542 (842)
Q Consensus 466 eLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDE 542 (842)
+|+.|+.+.+..+ ++.+.++.++...... ...+..+..+|+++||++|....... .+...++++|||||
T Consensus 76 sL~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~---~l~~~~l~~iVIDE 147 (607)
T PRK11057 76 SLMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE---HLAHWNPALLAVDE 147 (607)
T ss_pred HHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH---HHhhCCCCEEEEeC
Confidence 9999999888765 5566666655443221 12233455799999999987422111 12234689999999
Q ss_pred cccccccc--cccchhhh---hhcccccccceeecccCcchhhc------cccceeeeecccccccccccccccccccCc
Q 003178 543 ADHLLDLG--FRKDVENI---VDCLPRRRQSLLFSATMPKELVL------KREHTYIDTVGLGSVETPVKIKQSCLVAPH 611 (842)
Q Consensus 543 Ah~lld~g--f~~~i~~I---l~~l~~~~q~il~SATl~~~l~~------~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~ 611 (842)
||++++|| |++.+..+ ...+ +..+++++|||++..... ......+..... . .....+.+...
T Consensus 148 aH~i~~~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~---~---r~nl~~~v~~~ 220 (607)
T PRK11057 148 AHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---D---RPNIRYTLVEK 220 (607)
T ss_pred ccccccccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC---C---CCcceeeeeec
Confidence 99999987 66665544 2233 468899999999876311 001111100000 0 01112222223
Q ss_pred hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccc
Q 003178 612 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 691 (842)
Q Consensus 612 ~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ 691 (842)
......+..++.. ..+.++||||+|+++|+.++..|+..++.+..+||+|++.+|..+++.|+.|+..|||||+++
T Consensus 221 ~~~~~~l~~~l~~----~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~ 296 (607)
T PRK11057 221 FKPLDQLMRYVQE----QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAF 296 (607)
T ss_pred cchHHHHHHHHHh----cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechh
Confidence 3334444444443 346789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccC
Q 003178 692 ARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDL 746 (842)
Q Consensus 692 arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L 746 (842)
++|||+|+|++|||||+|.+.+.|+||+|||||.|.+|.|++|+++.+..+++.+
T Consensus 297 ~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred hccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887665544
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.6e-44 Score=426.05 Aligned_cols=325 Identities=22% Similarity=0.308 Sum_probs=249.0
Q ss_pred hhcc-cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHH
Q 003178 393 ALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (842)
Q Consensus 393 ~L~~-~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi 471 (842)
.|++ +||..++|+|.++|+.+++|+|+++++|||+|||+||++|++.. . ..+|||+|+++|+.|+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---~-----------g~~lVisPl~sL~~dq 69 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---K-----------GLTVVISPLISLMKDQ 69 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---C-----------CcEEEEcCCHHHHHHH
Confidence 3443 79999999999999999999999999999999999999998731 1 1479999999999999
Q ss_pred HHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccc
Q 003178 472 AAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548 (842)
Q Consensus 472 ~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld 548 (842)
++.+..+ ++.+..+.++...... ...+..+.++|+++||++|....... .....++++|||||||++.+
T Consensus 70 ~~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~---~l~~~~l~~iViDEaH~i~~ 141 (591)
T TIGR01389 70 VDQLRAA-----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN---MLQRIPIALVAVDEAHCVSQ 141 (591)
T ss_pred HHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH---HHhcCCCCEEEEeCCccccc
Confidence 9888775 5667777776554322 12334456899999999986432211 12345799999999999999
Q ss_pred cc--cccchhhhhh---cccccccceeecccCcchhhcc--ccceeeeecccccccccccccccccccCchhhHHHHHHH
Q 003178 549 LG--FRKDVENIVD---CLPRRRQSLLFSATMPKELVLK--REHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHL 621 (842)
Q Consensus 549 ~g--f~~~i~~Il~---~l~~~~q~il~SATl~~~l~~~--~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~l 621 (842)
|| |++.+..+.. .++ ..+++++|||++..+... ........... ..........+.+.....+...+..+
T Consensus 142 ~g~~frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~--~~~~~r~nl~~~v~~~~~~~~~l~~~ 218 (591)
T TIGR01389 142 WGHDFRPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEF--ITSFDRPNLRFSVVKKNNKQKFLLDY 218 (591)
T ss_pred ccCccHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE--ecCCCCCCcEEEEEeCCCHHHHHHHH
Confidence 87 6766655533 333 445999999998764211 00000000000 00111112223333344556666666
Q ss_pred HhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcc
Q 003178 622 LKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVT 701 (842)
Q Consensus 622 L~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~ 701 (842)
+..+ .+.++||||+|++.++.++..|...++.+..+||+|++.+|..+++.|.+|++.|||||+++++|||+|+|+
T Consensus 219 l~~~----~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~ 294 (591)
T TIGR01389 219 LKKH----RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVR 294 (591)
T ss_pred HHhc----CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCC
Confidence 6653 356899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccC
Q 003178 702 SVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDL 746 (842)
Q Consensus 702 ~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L 746 (842)
+||||++|.+.+.|+|++|||||.|..|.|++|+.+.+...++.+
T Consensus 295 ~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 295 FVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred EEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 999999999999999999999999999999999999887655544
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.4e-43 Score=428.10 Aligned_cols=330 Identities=21% Similarity=0.246 Sum_probs=254.0
Q ss_pred cccccCCCchhHhhhcccceeeeeehhhhhhhh-hhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 380 ~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~-il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
.|++++|++.+++.|.+.||..|+|+|.++++. +++|+|++++||||||||++|.+|+++++... .++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~-----------~ka 70 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG-----------GKA 70 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC-----------CcE
Confidence 488999999999999999999999999999998 77899999999999999999999999888531 269
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceee
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~l 538 (842)
|||+||++||.|+++.+..+.. .++.+..++|+..... ..+ ..++|+||||+++..++.+.. ..+.++++|
T Consensus 71 l~i~P~raLa~q~~~~~~~~~~--~g~~v~~~tGd~~~~~--~~l--~~~~IiV~Tpek~~~llr~~~---~~l~~v~lv 141 (737)
T PRK02362 71 LYIVPLRALASEKFEEFERFEE--LGVRVGISTGDYDSRD--EWL--GDNDIIVATSEKVDSLLRNGA---PWLDDITCV 141 (737)
T ss_pred EEEeChHHHHHHHHHHHHHhhc--CCCEEEEEeCCcCccc--ccc--CCCCEEEECHHHHHHHHhcCh---hhhhhcCEE
Confidence 9999999999999999997643 2788889999865432 222 237999999999988887542 346789999
Q ss_pred eecccccccccccccchhhhhhcc---cccccceeecccCcchhhccccceeeeeccccccccccccc------------
Q 003178 539 VLDEADHLLDLGFRKDVENIVDCL---PRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKIK------------ 603 (842)
Q Consensus 539 VlDEAh~lld~gf~~~i~~Il~~l---~~~~q~il~SATl~~~l~~~~~~~~i~~v~~~~~~~~~~l~------------ 603 (842)
||||+|.+.+.+++..++.++..+ .+..|+|++|||+++.-.+.. +++.........|..+.
T Consensus 142 ViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~---wl~~~~~~~~~rpv~l~~~v~~~~~~~~~ 218 (737)
T PRK02362 142 VVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELAD---WLDAELVDSEWRPIDLREGVFYGGAIHFD 218 (737)
T ss_pred EEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHH---HhCCCcccCCCCCCCCeeeEecCCeeccc
Confidence 999999999988888888776654 467899999999987421110 00000000000011110
Q ss_pred --ccccccCc-hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHh-------------------------
Q 003178 604 --QSCLVAPH-ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK------------------------- 655 (842)
Q Consensus 604 --~~~~~~~~-~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~------------------------- 655 (842)
+..+.... ......+...+. .++++||||+|++.|+.++..|....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 292 (737)
T PRK02362 219 DSQREVEVPSKDDTLNLVLDTLE------EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDT 292 (737)
T ss_pred cccccCCCccchHHHHHHHHHHH------cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCc
Confidence 01111111 112222222221 45799999999999999988876431
Q ss_pred -----------hhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEE----ec-----CCCChHHH
Q 003178 656 -----------MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ----VG-----IPPDREQY 715 (842)
Q Consensus 656 -----------~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~----yd-----~P~s~~~y 715 (842)
..+..+|++|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|
T Consensus 293 ~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y 372 (737)
T PRK02362 293 ETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEY 372 (737)
T ss_pred cccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHH
Confidence 24667899999999999999999999999999999999999999999997 76 68999999
Q ss_pred HHHhhcCCCCCCC--cceeEEeccc
Q 003178 716 IHRLGRTGREGKE--GEGVLLLAPW 738 (842)
Q Consensus 716 iQRiGRaGR~G~~--G~~i~ll~~~ 738 (842)
+||+|||||.|.. |.|++++...
T Consensus 373 ~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 373 HQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred HHHhhcCCCCCCCCCceEEEEecCc
Confidence 9999999999864 8999998764
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.7e-42 Score=425.11 Aligned_cols=344 Identities=21% Similarity=0.265 Sum_probs=246.6
Q ss_pred CCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccch
Q 003178 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (842)
Q Consensus 386 l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTR 465 (842)
+++.+.+.+.+ +|..|||+|.++|+.+++|+|++++||||||||++|++|+++++....... ....++++|||+|||
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~--~~~~~~~~LyIsPtr 94 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREG--ELEDKVYCLYVSPLR 94 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcccc--CCCCCeEEEEEcCHH
Confidence 45666665554 789999999999999999999999999999999999999999987643211 112356899999999
Q ss_pred hHHHHHHHHHHHhh-----------hcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEec
Q 003178 466 ELASQIAAEAIALL-----------KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (842)
Q Consensus 466 eLA~Qi~~~l~~l~-----------~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~ 534 (842)
+||.|+++.+...+ ...+++.+.+.+|++....... ....+++|+|+||++|..++... .+...+.+
T Consensus 95 aLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~-~l~~~p~IlVtTPE~L~~ll~~~-~~~~~l~~ 172 (876)
T PRK13767 95 ALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQK-MLKKPPHILITTPESLAILLNSP-KFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHH-HHhCCCCEEEecHHHHHHHhcCh-hHHHHHhc
Confidence 99999998765322 1223678888999887553333 33445899999999998777543 22224678
Q ss_pred ceeeeecccccccccccccchhhhh----hcccccccceeecccCcchhh----cccc-----ceeeeeccccccccccc
Q 003178 535 LKMLVLDEADHLLDLGFRKDVENIV----DCLPRRRQSLLFSATMPKELV----LKRE-----HTYIDTVGLGSVETPVK 601 (842)
Q Consensus 535 l~~lVlDEAh~lld~gf~~~i~~Il----~~l~~~~q~il~SATl~~~l~----~~~~-----~~~i~~v~~~~~~~~~~ 601 (842)
+++|||||||.+.+..+...+..++ ...+...|++++|||+++.-. +... ......+.... .....
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~-~k~~~ 251 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARF-VKPFD 251 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCC-Cccce
Confidence 9999999999999766555444333 333457899999999986311 1000 00000110000 00000
Q ss_pred ccc-----cccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH------hhhHHHHhhcCcchhh
Q 003178 602 IKQ-----SCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM------KMNVREMYSRKPQLYR 670 (842)
Q Consensus 602 l~~-----~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~------~~~v~~lhg~~~~~~R 670 (842)
+.. .............+...+...+. ...++||||+|+..|+.++..|+.. +..+..+||+|++.+|
T Consensus 252 i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R 329 (876)
T PRK13767 252 IKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVR 329 (876)
T ss_pred EEEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHH
Confidence 000 00011111122233333433332 2468999999999999999999873 3578999999999999
Q ss_pred hhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCC-CCcceeEEecc
Q 003178 671 DRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREG-KEGEGVLLLAP 737 (842)
Q Consensus 671 ~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G-~~G~~i~ll~~ 737 (842)
..+++.|++|+.+|||||+++++|||+|+|++||+|+.|.++..|+||+|||||.+ ..+.++++...
T Consensus 330 ~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 330 LEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999864 44566666554
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1e-41 Score=412.89 Aligned_cols=336 Identities=21% Similarity=0.239 Sum_probs=256.1
Q ss_pred cccccCCCchhHhhhcccceeeeeehhhhhhhh-hhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 380 ~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~-il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
.|+++++++.+.+.|++.||..|+|+|.++++. +++|+|++++||||||||++|.+|+++++.... .++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~----------~~~ 71 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREG----------GKA 71 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcC----------CeE
Confidence 478899999999999999999999999999986 789999999999999999999999998876431 269
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceee
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~l 538 (842)
|||+||++||.|+++.+..+.. .++.+..++|+..... ..+ ..++|+|+||+++..++.... ..+.++++|
T Consensus 72 l~l~P~~aLa~q~~~~~~~~~~--~g~~v~~~~Gd~~~~~--~~~--~~~~IiV~Tpe~~~~ll~~~~---~~l~~l~lv 142 (720)
T PRK00254 72 VYLVPLKALAEEKYREFKDWEK--LGLRVAMTTGDYDSTD--EWL--GKYDIIIATAEKFDSLLRHGS---SWIKDVKLV 142 (720)
T ss_pred EEEeChHHHHHHHHHHHHHHhh--cCCEEEEEeCCCCCch--hhh--ccCCEEEEcHHHHHHHHhCCc---hhhhcCCEE
Confidence 9999999999999999987632 3788888999875432 112 347999999999988876542 346789999
Q ss_pred eecccccccccccccchhhhhhcccccccceeecccCcchhhccccceeeeecccccccccccc-----cccccccCch-
Q 003178 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKI-----KQSCLVAPHE- 612 (842)
Q Consensus 539 VlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~i~~v~~~~~~~~~~l-----~~~~~~~~~~- 612 (842)
|+||+|.+.+.++...+..++..+....|+|++|||+++.-.+.. ++..........+..+ .+.+......
T Consensus 143 ViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~~~la~---wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~ 219 (720)
T PRK00254 143 VADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGNAEELAE---WLNAELVVSDWRPVKLRKGVFYQGFLFWEDGK 219 (720)
T ss_pred EEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCCHHHHHH---HhCCccccCCCCCCcceeeEecCCeeeccCcc
Confidence 999999999988999999999999889999999999976422111 1100000111111111 1111111111
Q ss_pred -hhH-HHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH---------------------------------hhh
Q 003178 613 -LHF-QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM---------------------------------KMN 657 (842)
Q Consensus 613 -~k~-~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~---------------------------------~~~ 657 (842)
.++ ..+..++...+. .+.++||||+|++.|+.++..|... ...
T Consensus 220 ~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g 297 (720)
T PRK00254 220 IERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGG 297 (720)
T ss_pred hhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhC
Confidence 111 112222222221 3568999999999998887666421 224
Q ss_pred HHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEE-------ecCCC-ChHHHHHHhhcCCCCC--C
Q 003178 658 VREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ-------VGIPP-DREQYIHRLGRTGREG--K 727 (842)
Q Consensus 658 v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~-------yd~P~-s~~~yiQRiGRaGR~G--~ 727 (842)
+..+|++|++.+|..+++.|++|.++|||||+++++|||+|++++||. ++.|. +..+|+||+|||||.| .
T Consensus 298 v~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~ 377 (720)
T PRK00254 298 VAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDE 377 (720)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCC
Confidence 778999999999999999999999999999999999999999999994 45443 5779999999999976 6
Q ss_pred CcceeEEeccch
Q 003178 728 EGEGVLLLAPWE 739 (842)
Q Consensus 728 ~G~~i~ll~~~E 739 (842)
.|.+++++.+.+
T Consensus 378 ~G~~ii~~~~~~ 389 (720)
T PRK00254 378 VGEAIIVATTEE 389 (720)
T ss_pred CceEEEEecCcc
Confidence 799999987644
No 44
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-41 Score=338.99 Aligned_cols=319 Identities=29% Similarity=0.461 Sum_probs=264.8
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
++-|.++-|.|++++++-..||+.|+.+|.++||...-|.||+++|..|.|||.+|.+..++.+--- ...+.
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv--------~g~vs 112 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV--------DGQVS 112 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC--------CCeEE
Confidence 4669999999999999999999999999999999999999999999999999999999888776321 22357
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
+|++|.|||||.||..+..++.++.|.+.+.+++||..++.+...+++ .++|+|+||||++.+.++. .++|++++.
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~-~PhivVgTPGrilALvr~k---~l~lk~vkh 188 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN-CPHIVVGTPGRILALVRNR---SLNLKNVKH 188 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC-CCeEEEcCcHHHHHHHHhc---cCchhhcce
Confidence 999999999999999999999999999999999999999988887776 5899999999999999887 578899999
Q ss_pred eeecccccccc-cccccchhhhhhcccccccceeecccCcchhhccccceeeee----cccccccccccccccccccCch
Q 003178 538 LVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDT----VGLGSVETPVKIKQSCLVAPHE 612 (842)
Q Consensus 538 lVlDEAh~lld-~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~i~~----v~~~~~~~~~~l~~~~~~~~~~ 612 (842)
+||||+|.|++ ...+.++..|....|...|+++||||+++++.--......++ +.....-+...++|+|+.....
T Consensus 189 FvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~ 268 (387)
T KOG0329|consen 189 FVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKEN 268 (387)
T ss_pred eehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhh
Confidence 99999999984 457889999999999999999999999998632211111121 1122233455678888887777
Q ss_pred hhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccc
Q 003178 613 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 692 (842)
Q Consensus 613 ~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~a 692 (842)
.|-..+..+|... .-.+++||+.+.... + | ..+ ||||++++
T Consensus 269 eKNrkl~dLLd~L----eFNQVvIFvKsv~Rl---------------------~----------f---~kr-~vat~lfg 309 (387)
T KOG0329|consen 269 EKNRKLNDLLDVL----EFNQVVIFVKSVQRL---------------------S----------F---QKR-LVATDLFG 309 (387)
T ss_pred hhhhhhhhhhhhh----hhcceeEeeehhhhh---------------------h----------h---hhh-hHHhhhhc
Confidence 7777777777654 234899999876541 0 2 122 89999999
Q ss_pred cCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccch-hhhhccCC
Q 003178 693 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWE-EYFLDDLK 747 (842)
Q Consensus 693 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E-~~~l~~L~ 747 (842)
||+||..|+.|||||.|.+..+|.||+|||||.|..|.++.|++..+ ..+++.++
T Consensus 310 rgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vq 365 (387)
T KOG0329|consen 310 RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQ 365 (387)
T ss_pred cccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhh
Confidence 99999999999999999999999999999999999999999998744 35555443
No 45
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.3e-40 Score=392.24 Aligned_cols=319 Identities=18% Similarity=0.156 Sum_probs=229.2
Q ss_pred cceeeeeehhhhhhhhhhcCc-ceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCce-EEEEeccchhHHHHHHHH
Q 003178 397 AGYIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI-YVLILCPTRELASQIAAE 474 (842)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~-dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~-~~LIL~PTReLA~Qi~~~ 474 (842)
.||+ |||||.++|+.++.|+ ++++++|||||||.+|.++.+.. ... ...+ +.++++|||+||.|+++.
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~--------~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG--------AKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc--------ccccceEEEeCchHHHHHHHHHH
Confidence 5888 9999999999999998 57778999999999765554421 111 1112 345577999999999999
Q ss_pred HHHhhhcCC----------------------ceeEEEEecceeeeeccccccCCCceEEecCccchhhhcc-ccCCce--
Q 003178 475 AIALLKNHD----------------------GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIE-NKSGLS-- 529 (842)
Q Consensus 475 l~~l~~~~~----------------------~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~-~~~~~~-- 529 (842)
+.++.+..+ .+.+.+++||.....+...+. .+++|||+|++.+..-+- ...+..
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~-~~p~IIVgT~D~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDP-HRPAVIVGTVDMIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcC-CCCcEEEECHHHHcCCccccccccccc
Confidence 999887542 488999999998877766664 458999999644422111 000000
Q ss_pred ---E---EEecceeeeecccccccccccccchhhhhhcc--ccc---ccceeecccCcchhh-----ccccceeeeeccc
Q 003178 530 ---V---RLMGLKMLVLDEADHLLDLGFRKDVENIVDCL--PRR---RQSLLFSATMPKELV-----LKREHTYIDTVGL 593 (842)
Q Consensus 530 ---~---~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l--~~~---~q~il~SATl~~~l~-----~~~~~~~i~~v~~ 593 (842)
+ .+.++++||||||| ++++|..++..|+..+ ++. +|+++||||++..+. +......+. +.
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~-V~- 236 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHP-VL- 236 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceee-cc-
Confidence 1 26789999999999 7899999999999964 432 699999999987532 111111111 11
Q ss_pred ccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhh--
Q 003178 594 GSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRD-- 671 (842)
Q Consensus 594 ~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~-- 671 (842)
........+.++ +..+...++..+...+...+. ..++++||||||++.++.++..|++.++ ..+||+|++.+|.
T Consensus 237 ~~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~ 312 (844)
T TIGR02621 237 KKRLAAKKIVKL-VPPSDEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDL 312 (844)
T ss_pred cccccccceEEE-EecChHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhH
Confidence 111112223332 333334444444433333222 3457899999999999999999998776 8999999999999
Q ss_pred ---hhhHHHhh----cc-------eEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcce-eEEec
Q 003178 672 ---RISEEFRA----SK-------RLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEG-VLLLA 736 (842)
Q Consensus 672 ---~v~~~F~~----g~-------~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~-i~ll~ 736 (842)
.+++.|++ |+ ..|||||+++++||||+. ++||++..| .+.|+||+||+||.|+.|.+ +.++.
T Consensus 313 ~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 313 VKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred HHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 78999987 54 689999999999999987 889988877 68999999999999986444 56554
Q ss_pred c
Q 003178 737 P 737 (842)
Q Consensus 737 ~ 737 (842)
+
T Consensus 390 ~ 390 (844)
T TIGR02621 390 L 390 (844)
T ss_pred e
Confidence 3
No 46
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=7e-40 Score=394.97 Aligned_cols=333 Identities=20% Similarity=0.220 Sum_probs=247.7
Q ss_pred cccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEE
Q 003178 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (842)
Q Consensus 380 ~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~L 459 (842)
.|+++++++.+++.+...+|. ++++|.++++.++++++++++||||||||++|.+++++.+... .++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~-----------~k~v 69 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG-----------LKSI 69 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC-----------CcEE
Confidence 478899999999999999998 9999999999999999999999999999999999998877542 2589
Q ss_pred EeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeee
Q 003178 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (842)
Q Consensus 460 IL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lV 539 (842)
|++|+++||.|+++.+.++.. .++.+...+|+...... .+ ..++|+|+||+++..++.... ..+.++++||
T Consensus 70 ~i~P~raLa~q~~~~~~~l~~--~g~~v~~~~G~~~~~~~--~~--~~~dIiv~Tpek~~~l~~~~~---~~l~~v~lvV 140 (674)
T PRK01172 70 YIVPLRSLAMEKYEELSRLRS--LGMRVKISIGDYDDPPD--FI--KRYDVVILTSEKADSLIHHDP---YIINDVGLIV 140 (674)
T ss_pred EEechHHHHHHHHHHHHHHhh--cCCeEEEEeCCCCCChh--hh--ccCCEEEECHHHHHHHHhCCh---hHHhhcCEEE
Confidence 999999999999999988643 36778888887653221 11 237999999999888776542 3467899999
Q ss_pred ecccccccccccccchhhhhhc---ccccccceeecccCcchhhccccceeeeecccccccccccccccc-----cccC-
Q 003178 540 LDEADHLLDLGFRKDVENIVDC---LPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKIKQSC-----LVAP- 610 (842)
Q Consensus 540 lDEAh~lld~gf~~~i~~Il~~---l~~~~q~il~SATl~~~l~~~~~~~~i~~v~~~~~~~~~~l~~~~-----~~~~- 610 (842)
|||||++.+.++...++.++.. +++..|+|++|||+++...+.. +++.........+..+.... ....
T Consensus 141 iDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~~~la~---wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~ 217 (674)
T PRK01172 141 ADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNANELAQ---WLNASLIKSNFRPVPLKLGILYRKRLILDG 217 (674)
T ss_pred EecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCHHHHHH---HhCCCccCCCCCCCCeEEEEEecCeeeecc
Confidence 9999999988888777777554 4567899999999986522111 00000000001111111100 0011
Q ss_pred chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHh-------------------------hhHHHHhhcC
Q 003178 611 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK-------------------------MNVREMYSRK 665 (842)
Q Consensus 611 ~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~-------------------------~~v~~lhg~~ 665 (842)
.......+..++.... ..++++||||++++.++.++..|.... ..+..+||+|
T Consensus 218 ~~~~~~~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl 295 (674)
T PRK01172 218 YERSQVDINSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGL 295 (674)
T ss_pred cccccccHHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCC
Confidence 1111111333444332 245799999999999999998886531 2356789999
Q ss_pred cchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEec---------CCCChHHHHHHhhcCCCCCC--CcceeEE
Q 003178 666 PQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVG---------IPPDREQYIHRLGRTGREGK--EGEGVLL 734 (842)
Q Consensus 666 ~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd---------~P~s~~~yiQRiGRaGR~G~--~G~~i~l 734 (842)
++.+|..+++.|++|.++|||||+++++|+|+|+..+|| ++ .|.++.+|.||+|||||.|. .|.++++
T Consensus 296 ~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~ 374 (674)
T PRK01172 296 SNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIY 374 (674)
T ss_pred CHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEE
Confidence 999999999999999999999999999999999976555 33 35688999999999999984 6778888
Q ss_pred eccch
Q 003178 735 LAPWE 739 (842)
Q Consensus 735 l~~~E 739 (842)
+...+
T Consensus 375 ~~~~~ 379 (674)
T PRK01172 375 AASPA 379 (674)
T ss_pred ecCcc
Confidence 76543
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=9.9e-40 Score=397.09 Aligned_cols=316 Identities=19% Similarity=0.189 Sum_probs=237.9
Q ss_pred CCchhHhhhcc-cceeeeeehhhhhhhhhhcC------cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 386 ISPLTIKALTA-AGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 386 l~~~l~~~L~~-~g~~~~t~iQ~~aI~~il~g------~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
.+....+.+.+ ++|. +|++|.+||+.++++ +|++++|+||||||++|++|++..+... .++
T Consensus 436 ~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-----------~qv 503 (926)
T TIGR00580 436 PDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-----------KQV 503 (926)
T ss_pred CCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-----------CeE
Confidence 33445555554 6885 999999999999885 7999999999999999999999877542 269
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEecc
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l 535 (842)
+||+||++||.|+++.+.+++... ++.+..++|+...... ...+..+.++|||+||.. +... ..+.++
T Consensus 504 lvLvPT~~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~~~----v~f~~L 574 (926)
T TIGR00580 504 AVLVPTTLLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQKD----VKFKDL 574 (926)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hhCC----CCcccC
Confidence 999999999999999999988764 5778888877653321 223444568999999943 2222 356789
Q ss_pred eeeeecccccccccccccchhhhhhcccccccceeecccCcchhh-c----cccceeeeecccccccccccccccccccC
Q 003178 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-L----KREHTYIDTVGLGSVETPVKIKQSCLVAP 610 (842)
Q Consensus 536 ~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~-~----~~~~~~i~~v~~~~~~~~~~l~~~~~~~~ 610 (842)
++|||||+|++ .......+..++...|+++||||+.+... . ..+...+...... ...+..++....
T Consensus 575 ~llVIDEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~----R~~V~t~v~~~~ 645 (926)
T TIGR00580 575 GLLIIDEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED----RLPVRTFVMEYD 645 (926)
T ss_pred CEEEeeccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC----ccceEEEEEecC
Confidence 99999999994 33345566667778999999999765421 1 1111222111100 112222222111
Q ss_pred chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH--hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEec
Q 003178 611 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLILVTS 688 (842)
Q Consensus 611 ~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaT 688 (842)
. ..+...+...+ ..+++++|||++++.++.++..|++. ++.+..+||+|++.+|..+++.|++|+.+|||||
T Consensus 646 --~--~~i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT 719 (926)
T TIGR00580 646 --P--ELVREAIRREL--LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCT 719 (926)
T ss_pred --H--HHHHHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 1 12222222222 13578999999999999999999986 6789999999999999999999999999999999
Q ss_pred cccccCCCCCCcceeEEecCCC-ChHHHHHHhhcCCCCCCCcceeEEecc
Q 003178 689 DVSARGMDYPDVTSVVQVGIPP-DREQYIHRLGRTGREGKEGEGVLLLAP 737 (842)
Q Consensus 689 dv~arGlDip~V~~VI~yd~P~-s~~~yiQRiGRaGR~G~~G~~i~ll~~ 737 (842)
+++++|||+|++++||+++.|. +..+|+||+||+||.|+.|.|++++.+
T Consensus 720 ~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~ 769 (926)
T TIGR00580 720 TIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPH 769 (926)
T ss_pred ChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECC
Confidence 9999999999999999999975 678999999999999999999999865
No 48
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.4e-40 Score=373.82 Aligned_cols=315 Identities=24% Similarity=0.355 Sum_probs=243.7
Q ss_pred cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
+||..+++-|.++|..+++++|+++..|||+||++||+||++ +.. + .+|||+|..+|...+.+.+.
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAl--l~~-G-----------~TLVVSPLiSLM~DQV~~l~ 78 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPAL--LLE-G-----------LTLVVSPLISLMKDQVDQLE 78 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHH--hcC-C-----------CEEEECchHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999997 321 1 38999999999999888887
Q ss_pred HhhhcCCceeEEEEecceeeee---ccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccc--c
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKV---DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG--F 551 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~---~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~g--f 551 (842)
.. |+.+..+.+..+... ....+..+..++++-+|++|..--... .+.-..+.++||||||++.+|| |
T Consensus 79 ~~-----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~---~L~~~~i~l~vIDEAHCiSqWGhdF 150 (590)
T COG0514 79 AA-----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE---LLKRLPISLVAIDEAHCISQWGHDF 150 (590)
T ss_pred Hc-----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH---HHHhCCCceEEechHHHHhhcCCcc
Confidence 76 666666665543322 123444556899999999986421111 0112368899999999999998 9
Q ss_pred ccchhhhhh---cccccccceeecccCcchhh--------ccccceeeeecccccccccccccccccccCch-hhHHHHH
Q 003178 552 RKDVENIVD---CLPRRRQSLLFSATMPKELV--------LKREHTYIDTVGLGSVETPVKIKQSCLVAPHE-LHFQILH 619 (842)
Q Consensus 552 ~~~i~~Il~---~l~~~~q~il~SATl~~~l~--------~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~-~k~~~L~ 619 (842)
++.+..+.. .+| +.+++.+|||.++.+. +.....++... .+-..++.+.+.. .+.+..
T Consensus 151 RP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf--------dRpNi~~~v~~~~~~~~q~~- 220 (590)
T COG0514 151 RPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSF--------DRPNLALKVVEKGEPSDQLA- 220 (590)
T ss_pred CHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC--------CCchhhhhhhhcccHHHHHH-
Confidence 999987754 344 7889999999988742 11111222111 1111122222211 122222
Q ss_pred HHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCC
Q 003178 620 HLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPD 699 (842)
Q Consensus 620 ~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~ 699 (842)
++.. .........||||.|++.++.++..|...|+.+..||++|+..+|..+.+.|..++..|+|||.++++|||.||
T Consensus 221 -fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpd 298 (590)
T COG0514 221 -FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPD 298 (590)
T ss_pred -HHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCC
Confidence 3332 11234567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhcc
Q 003178 700 VTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDD 745 (842)
Q Consensus 700 V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~ 745 (842)
|++|||||+|.+++.|+|-+|||||.|.+..|++|+++.|....+.
T Consensus 299 VRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~ 344 (590)
T COG0514 299 VRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRY 344 (590)
T ss_pred ceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHH
Confidence 9999999999999999999999999999999999999988654433
No 49
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=9.8e-39 Score=376.46 Aligned_cols=339 Identities=20% Similarity=0.298 Sum_probs=264.5
Q ss_pred CCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccch
Q 003178 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (842)
Q Consensus 386 l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTR 465 (842)
+++.+.+.++.. |..|||.|.+|||.+..|+|++|+||||||||+|+.||++..+.+.. ......++.+|||+|.|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG---KGKLEDGIYALYISPLK 83 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc---CCCCCCceEEEEeCcHH
Confidence 678888888877 99999999999999999999999999999999999999999999874 11223568999999999
Q ss_pred hHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccc
Q 003178 466 ELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545 (842)
Q Consensus 466 eLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~ 545 (842)
+|+..+.+.+...+... |+.+...+|++.... ..+...+++||+|+||+.|.-+|... .+...|.+++++||||.|.
T Consensus 84 ALn~Di~~rL~~~~~~~-G~~v~vRhGDT~~~e-r~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 84 ALNNDIRRRLEEPLREL-GIEVAVRHGDTPQSE-KQKMLKNPPHILITTPESLAILLNSP-KFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred HHHHHHHHHHHHHHHHc-CCccceecCCCChHH-hhhccCCCCcEEEeChhHHHHHhcCH-HHHHHhcCCcEEEeehhhh
Confidence 99999999999998854 899999999988654 44455667999999999998877654 3345578999999999999
Q ss_pred ccccccccchhhh----hhcccccccceeecccCcchhhcc----ccceeeeecccccccccccccccccc-------cC
Q 003178 546 LLDLGFRKDVENI----VDCLPRRRQSLLFSATMPKELVLK----REHTYIDTVGLGSVETPVKIKQSCLV-------AP 610 (842)
Q Consensus 546 lld~gf~~~i~~I----l~~l~~~~q~il~SATl~~~l~~~----~~~~~i~~v~~~~~~~~~~l~~~~~~-------~~ 610 (842)
+.+...+.++.-- ....+ +.|.|++|||+.+..... ........+.... .....+...... ..
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~-~k~~~i~v~~p~~~~~~~~~~ 238 (814)
T COG1201 161 LAESKRGVQLALSLERLRELAG-DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSA-AKKLEIKVISPVEDLIYDEEL 238 (814)
T ss_pred hhccccchhhhhhHHHHHhhCc-ccEEEeehhccCCHHHHHHHhcCCCCceEEEEccc-CCcceEEEEecCCccccccch
Confidence 9876555554433 33334 889999999997653211 1110111111111 001111110000 01
Q ss_pred chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHh-hhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc
Q 003178 611 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK-MNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 689 (842)
Q Consensus 611 ~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~-~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd 689 (842)
....+..+..+++++ ..+|||+||+..++.++..|++.+ ..+..+||.++..+|..+.+.|++|+.+++|||.
T Consensus 239 ~~~~~~~i~~~v~~~------~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TS 312 (814)
T COG1201 239 WAALYERIAELVKKH------RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATS 312 (814)
T ss_pred hHHHHHHHHHHHhhc------CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEcc
Confidence 122344555555543 389999999999999999999987 8999999999999999999999999999999999
Q ss_pred ccccCCCCCCcceeEEecCCCChHHHHHHhhcCCC-CCCCcceeEEeccch
Q 003178 690 VSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGR-EGKEGEGVLLLAPWE 739 (842)
Q Consensus 690 v~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR-~G~~G~~i~ll~~~E 739 (842)
.++-|||+.+|+.||||+.|.++..++||+||+|. .|...+++++....+
T Consensus 313 SLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~ 363 (814)
T COG1201 313 SLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRD 363 (814)
T ss_pred chhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHH
Confidence 99999999999999999999999999999999995 456678888877643
No 50
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.4e-39 Score=386.42 Aligned_cols=308 Identities=19% Similarity=0.209 Sum_probs=230.8
Q ss_pred hhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCce
Q 003178 406 QEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI 485 (842)
Q Consensus 406 Q~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i 485 (842)
-.+.+..+.+++++|++|+||||||++|.+++++.... +.+++|++|||++|.|+++++.+.++...+.
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-----------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-----------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-----------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 34566677788999999999999999999998876521 1369999999999999999987666544455
Q ss_pred eEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccc-ccccccccc-hhhhhhccc
Q 003178 486 GVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH-LLDLGFRKD-VENIVDCLP 563 (842)
Q Consensus 486 ~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~-lld~gf~~~-i~~Il~~l~ 563 (842)
.|.+.+++... .+..++|+|+|||+|++++..+ ..+.++++|||||||+ +++.++.-. +..+...++
T Consensus 76 ~VGy~vr~~~~-------~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr 144 (819)
T TIGR01970 76 TVGYRVRGENK-------VSRRTRLEVVTEGILTRMIQDD----PELDGVGALIFDEFHERSLDADLGLALALDVQSSLR 144 (819)
T ss_pred EEEEEEccccc-------cCCCCcEEEECCcHHHHHHhhC----cccccCCEEEEeccchhhhccchHHHHHHHHHHhcC
Confidence 55555444321 1234799999999999998764 4578999999999994 677655432 344556677
Q ss_pred ccccceeecccCcchhhcc--ccceeeeecccccccccccccccccccCchhhH-HHHHHHHhhhhcCCCCceEEEEecc
Q 003178 564 RRRQSLLFSATMPKELVLK--REHTYIDTVGLGSVETPVKIKQSCLVAPHELHF-QILHHLLKEHILGTPDYKVIVFCST 640 (842)
Q Consensus 564 ~~~q~il~SATl~~~l~~~--~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~-~~L~~lL~~~~~~~~~~kiIVF~~s 640 (842)
++.|+|+||||++...... .+...+.. ......+.++|.......++ ..+...+...+. ...+.+||||++
T Consensus 145 ~dlqlIlmSATl~~~~l~~~l~~~~vI~~-----~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg 218 (819)
T TIGR01970 145 EDLKILAMSATLDGERLSSLLPDAPVVES-----EGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALA-SETGSILVFLPG 218 (819)
T ss_pred CCceEEEEeCCCCHHHHHHHcCCCcEEEe-----cCcceeeeeEEeecchhhhHHHHHHHHHHHHHH-hcCCcEEEEECC
Confidence 8899999999998763211 11111111 11122355555544433332 222223333222 235789999999
Q ss_pred hhHHHHHHHHHHH---HhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCC-------
Q 003178 641 GMVTSLLYLLLRE---MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPP------- 710 (842)
Q Consensus 641 ~~~~~~l~~~L~~---~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~------- 710 (842)
+.+++.++..|++ .++.+..+||+|++.+|..+++.|++|+.+||||||++++|||||+|++||++|+|.
T Consensus 219 ~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~ 298 (819)
T TIGR01970 219 QAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPK 298 (819)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccc
Confidence 9999999999987 368899999999999999999999999999999999999999999999999999874
Q ss_pred -----------ChHHHHHHhhcCCCCCCCcceeEEeccchhhh
Q 003178 711 -----------DREQYIHRLGRTGREGKEGEGVLLLAPWEEYF 742 (842)
Q Consensus 711 -----------s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~ 742 (842)
|.++|+||+|||||. .+|.||.|++..+...
T Consensus 299 ~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 299 TGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred cCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 456799999999999 6999999999876543
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=8.8e-39 Score=381.08 Aligned_cols=317 Identities=23% Similarity=0.266 Sum_probs=231.2
Q ss_pred hHhhhcccceeeeeehhhhhhhhhhcC------cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEecc
Q 003178 390 TIKALTAAGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463 (842)
Q Consensus 390 l~~~L~~~g~~~~t~iQ~~aI~~il~g------~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~P 463 (842)
+.+.+..++| .||++|.++|+.++++ .+++++|+||||||++|++|++..+.. +.+++|++|
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----------g~qvlilaP 292 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----------GYQVALMAP 292 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----------CCcEEEECC
Confidence 3445567888 6999999999999876 258999999999999999999887643 236999999
Q ss_pred chhHHHHHHHHHHHhhhcCCceeEEEEecceeeee---ccccccCCCceEEecCccchhhhccccCCceEEEecceeeee
Q 003178 464 TRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV---DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVL 540 (842)
Q Consensus 464 TReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~---~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVl 540 (842)
|++||.|+++.+.+++... ++.+.+++|+..... ....+..+.++|+|+||+.+.+. ..+.++.+|||
T Consensus 293 T~~LA~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~--------~~~~~l~lvVI 363 (630)
T TIGR00643 293 TEILAEQHYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK--------VEFKRLALVII 363 (630)
T ss_pred HHHHHHHHHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc--------ccccccceEEE
Confidence 9999999999999998754 788999999876543 22344455689999999987542 34578999999
Q ss_pred cccccccccccccchhhhhhccc--ccccceeecccCcchhhccccceeeeecccccccc-cccccccccccCchhhHHH
Q 003178 541 DEADHLLDLGFRKDVENIVDCLP--RRRQSLLFSATMPKELVLKREHTYIDTVGLGSVET-PVKIKQSCLVAPHELHFQI 617 (842)
Q Consensus 541 DEAh~lld~gf~~~i~~Il~~l~--~~~q~il~SATl~~~l~~~~~~~~i~~v~~~~~~~-~~~l~~~~~~~~~~~k~~~ 617 (842)
||+|++.... +. .+..... ..+++++||||+.+..........++.......+. ...+...+ .....+ ..
T Consensus 364 DEaH~fg~~q-r~---~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~--~~~~~~-~~ 436 (630)
T TIGR00643 364 DEQHRFGVEQ-RK---KLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVL--IKHDEK-DI 436 (630)
T ss_pred echhhccHHH-HH---HHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEE--eCcchH-HH
Confidence 9999964321 11 2222222 25789999999755421111101111110111110 01122222 222222 33
Q ss_pred HHHHHhhhhcCCCCceEEEEecch--------hHHHHHHHHHHHH--hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEe
Q 003178 618 LHHLLKEHILGTPDYKVIVFCSTG--------MVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLILVT 687 (842)
Q Consensus 618 L~~lL~~~~~~~~~~kiIVF~~s~--------~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVa 687 (842)
+...+...+ ..+.+++|||+.+ ..+..++..|... ++.+..+||+|++.+|..+++.|++|+.+||||
T Consensus 437 ~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVa 514 (630)
T TIGR00643 437 VYEFIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVA 514 (630)
T ss_pred HHHHHHHHH--HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 444444433 2356899999976 4466677777654 678999999999999999999999999999999
Q ss_pred ccccccCCCCCCcceeEEecCCC-ChHHHHHHhhcCCCCCCCcceeEEec
Q 003178 688 SDVSARGMDYPDVTSVVQVGIPP-DREQYIHRLGRTGREGKEGEGVLLLA 736 (842)
Q Consensus 688 Tdv~arGlDip~V~~VI~yd~P~-s~~~yiQRiGRaGR~G~~G~~i~ll~ 736 (842)
|+++++|||+|++++||+++.|. +.++|.||+||+||.|+.|.|++++.
T Consensus 515 T~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 515 TTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999999999999999986 67889999999999999999999983
No 52
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.6e-38 Score=381.21 Aligned_cols=310 Identities=21% Similarity=0.262 Sum_probs=229.7
Q ss_pred cccceeeeeehhhhhhhhhhcC------cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHH
Q 003178 395 TAAGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (842)
Q Consensus 395 ~~~g~~~~t~iQ~~aI~~il~g------~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA 468 (842)
..++| .||++|.++|+.+..+ .+++++|+||||||++|++|++..+.. +.+++|++||++||
T Consensus 256 ~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-----------g~q~lilaPT~~LA 323 (681)
T PRK10917 256 ASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-----------GYQAALMAPTEILA 323 (681)
T ss_pred HhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-----------CCeEEEEeccHHHH
Confidence 45677 4999999999999886 489999999999999999999987643 23699999999999
Q ss_pred HHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccc
Q 003178 469 SQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545 (842)
Q Consensus 469 ~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~ 545 (842)
.|+++.+.+++... ++.+.+++|+...... ...+..+.++|+|+||+.+.+. ..+.++++|||||+|+
T Consensus 324 ~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~--------v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 324 EQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD--------VEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc--------chhcccceEEEechhh
Confidence 99999999998764 6889999999874322 2344455689999999887542 3356899999999999
Q ss_pred ccccccccchhhhhhcccccccceeecccCcchh-hccccceeeeecccccccc-cccccccccccCchhhHHHHHHHHh
Q 003178 546 LLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL-VLKREHTYIDTVGLGSVET-PVKIKQSCLVAPHELHFQILHHLLK 623 (842)
Q Consensus 546 lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l-~~~~~~~~i~~v~~~~~~~-~~~l~~~~~~~~~~~k~~~L~~lL~ 623 (842)
+... ....+.......++++||||+.+.. .+.. ....+...+...+. ...+...+. .... ...+...+.
T Consensus 395 fg~~-----qr~~l~~~~~~~~iL~~SATp~prtl~~~~-~g~~~~s~i~~~p~~r~~i~~~~~--~~~~-~~~~~~~i~ 465 (681)
T PRK10917 395 FGVE-----QRLALREKGENPHVLVMTATPIPRTLAMTA-YGDLDVSVIDELPPGRKPITTVVI--PDSR-RDEVYERIR 465 (681)
T ss_pred hhHH-----HHHHHHhcCCCCCEEEEeCCCCHHHHHHHH-cCCCceEEEecCCCCCCCcEEEEe--Cccc-HHHHHHHHH
Confidence 6322 2223333344688999999975542 1111 00001000011110 111222222 2222 223334444
Q ss_pred hhhcCCCCceEEEEecch--------hHHHHHHHHHHHH--hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccccc
Q 003178 624 EHILGTPDYKVIVFCSTG--------MVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSAR 693 (842)
Q Consensus 624 ~~~~~~~~~kiIVF~~s~--------~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ar 693 (842)
..+ ..+.+++|||++. ..+..+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 466 ~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 543 (681)
T PRK10917 466 EEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEV 543 (681)
T ss_pred HHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceee
Confidence 433 2456999999954 4456677777765 468999999999999999999999999999999999999
Q ss_pred CCCCCCcceeEEecCCC-ChHHHHHHhhcCCCCCCCcceeEEec
Q 003178 694 GMDYPDVTSVVQVGIPP-DREQYIHRLGRTGREGKEGEGVLLLA 736 (842)
Q Consensus 694 GlDip~V~~VI~yd~P~-s~~~yiQRiGRaGR~G~~G~~i~ll~ 736 (842)
|||+|++++||+++.|. ..++|.||+||+||.|..|.|++++.
T Consensus 544 GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 544 GVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99999999999999997 57888999999999999999999995
No 53
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.7e-38 Score=370.92 Aligned_cols=309 Identities=17% Similarity=0.190 Sum_probs=220.2
Q ss_pred ehhhhhhhhhhcCcceEEeeccCCCceee---------ehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHH
Q 003178 404 RVQEATLSACLEGKDAVVKAKTGTGKSIA---------FLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (842)
Q Consensus 404 ~iQ~~aI~~il~g~dvii~A~TGSGKTla---------fllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~ 474 (842)
.+|.++++.+++|+++|++|+||||||.+ |++|.+..+..-.. ...+.+++|++|||+||.|+...
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~-----~~~~~~ilvt~PrreLa~qi~~~ 241 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP-----NFIERPIVLSLPRVALVRLHSIT 241 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc-----ccCCcEEEEECcHHHHHHHHHHH
Confidence 48999999999999999999999999996 44444444321110 01223799999999999999999
Q ss_pred HHHhhhc--CCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccc
Q 003178 475 AIALLKN--HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552 (842)
Q Consensus 475 l~~l~~~--~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~ 552 (842)
+.+.+++ ..+..+.+.+||... ..........+|+|+|++... ..+.++++|||||||++...+
T Consensus 242 i~~~vg~~~~~g~~v~v~~Gg~~~--~~~~t~~k~~~Ilv~T~~L~l----------~~L~~v~~VVIDEaHEr~~~~-- 307 (675)
T PHA02653 242 LLKSLGFDEIDGSPISLKYGSIPD--ELINTNPKPYGLVFSTHKLTL----------NKLFDYGTVIIDEVHEHDQIG-- 307 (675)
T ss_pred HHHHhCccccCCceEEEEECCcch--HHhhcccCCCCEEEEeCcccc----------cccccCCEEEccccccCccch--
Confidence 9887754 245667888998762 211222235799999976311 236789999999999998775
Q ss_pred cchhhhhhcc-cccccceeecccCcchhhcc----ccceeeeecccccccccccccccccccC----------chhhHHH
Q 003178 553 KDVENIVDCL-PRRRQSLLFSATMPKELVLK----REHTYIDTVGLGSVETPVKIKQSCLVAP----------HELHFQI 617 (842)
Q Consensus 553 ~~i~~Il~~l-~~~~q~il~SATl~~~l~~~----~~~~~i~~v~~~~~~~~~~l~~~~~~~~----------~~~k~~~ 617 (842)
+.+..++..+ ++.+|+++||||++.++... .+...+.. . ..+...+.+.++... ...+..
T Consensus 308 DllL~llk~~~~~~rq~ILmSATl~~dv~~l~~~~~~p~~I~I---~-grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~- 382 (675)
T PHA02653 308 DIIIAVARKHIDKIRSLFLMTATLEDDRDRIKEFFPNPAFVHI---P-GGTLFPISEVYVKNKYNPKNKRAYIEEEKKN- 382 (675)
T ss_pred hHHHHHHHHhhhhcCEEEEEccCCcHhHHHHHHHhcCCcEEEe---C-CCcCCCeEEEEeecCcccccchhhhHHHHHH-
Confidence 3445555443 34469999999998653211 11122211 1 111233444443221 111212
Q ss_pred HHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH--hhhHHHHhhcCcchhhhhhhHHH-hhcceEEEEeccccccC
Q 003178 618 LHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEF-RASKRLILVTSDVSARG 694 (842)
Q Consensus 618 L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~v~~~F-~~g~~~VLVaTdv~arG 694 (842)
+...+.... ...++.+||||+++.+++.+++.|.+. ++.+..+||+|++. .++++.| ++|+.+||||||+++||
T Consensus 383 ~l~~L~~~~-~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERG 459 (675)
T PHA02653 383 IVTALKKYT-PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESS 459 (675)
T ss_pred HHHHHHHhh-cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhcc
Confidence 222222211 123468999999999999999999987 68999999999974 4666777 68999999999999999
Q ss_pred CCCCCcceeEEec---CCC---------ChHHHHHHhhcCCCCCCCcceeEEeccchh
Q 003178 695 MDYPDVTSVVQVG---IPP---------DREQYIHRLGRTGREGKEGEGVLLLAPWEE 740 (842)
Q Consensus 695 lDip~V~~VI~yd---~P~---------s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~ 740 (842)
||||+|++||++| .|. +.++|+||+|||||. ++|.|+.|+++.+.
T Consensus 460 IDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 460 VTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred ccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 9999999999999 565 889999999999999 69999999998664
No 54
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.3e-38 Score=382.45 Aligned_cols=305 Identities=17% Similarity=0.198 Sum_probs=229.6
Q ss_pred hhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCcee
Q 003178 407 EATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIG 486 (842)
Q Consensus 407 ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~ 486 (842)
.+.+.++.+++++|++|+||||||++|.+|+++.... ..++||++|||++|.|+++.+...++...+..
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----------CCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 3466677788999999999999999998888754211 12699999999999999999977766555667
Q ss_pred EEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccc-ccccccc-cchhhhhhcccc
Q 003178 487 VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH-LLDLGFR-KDVENIVDCLPR 564 (842)
Q Consensus 487 v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~-lld~gf~-~~i~~Il~~l~~ 564 (842)
+.+.+++.... ....+|+|+|||+|++++..+ ..+.++++|||||+|+ .++.++. ..+..++..+++
T Consensus 80 VGy~vr~~~~~-------~~~t~I~v~T~G~Llr~l~~d----~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~ 148 (812)
T PRK11664 80 VGYRMRAESKV-------GPNTRLEVVTEGILTRMIQRD----PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRD 148 (812)
T ss_pred EEEEecCcccc-------CCCCcEEEEChhHHHHHHhhC----CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCc
Confidence 77766654422 223689999999999998764 4578999999999997 3443321 223445666778
Q ss_pred cccceeecccCcchhhcc--ccceeeeecccccccccccccccccccCchhhHH-HHHHHHhhhhcCCCCceEEEEecch
Q 003178 565 RRQSLLFSATMPKELVLK--REHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQ-ILHHLLKEHILGTPDYKVIVFCSTG 641 (842)
Q Consensus 565 ~~q~il~SATl~~~l~~~--~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~-~L~~lL~~~~~~~~~~kiIVF~~s~ 641 (842)
+.|+|+||||++...... .+...+.. ......+.++|...+...++. .+...+...+. ...+.+||||+++
T Consensus 149 ~lqlilmSATl~~~~l~~~~~~~~~I~~-----~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~ 222 (812)
T PRK11664 149 DLKLLIMSATLDNDRLQQLLPDAPVIVS-----EGRSFPVERRYQPLPAHQRFDEAVARATAELLR-QESGSLLLFLPGV 222 (812)
T ss_pred cceEEEEecCCCHHHHHHhcCCCCEEEe-----cCccccceEEeccCchhhhHHHHHHHHHHHHHH-hCCCCEEEEcCCH
Confidence 899999999998763211 11111111 111223555555444444432 22233333332 2357899999999
Q ss_pred hHHHHHHHHHHH---HhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCC--------
Q 003178 642 MVTSLLYLLLRE---MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPP-------- 710 (842)
Q Consensus 642 ~~~~~l~~~L~~---~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~-------- 710 (842)
.+++.+++.|+. .++.+..+||+|++.+|.+++..|++|+.+||||||++++|||||+|++||+++.+.
T Consensus 223 ~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~ 302 (812)
T PRK11664 223 GEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKT 302 (812)
T ss_pred HHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccC
Confidence 999999999987 467889999999999999999999999999999999999999999999999988764
Q ss_pred ----------ChHHHHHHhhcCCCCCCCcceeEEeccchh
Q 003178 711 ----------DREQYIHRLGRTGREGKEGEGVLLLAPWEE 740 (842)
Q Consensus 711 ----------s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~ 740 (842)
|.++|+||+|||||. .+|.||.|+++.+.
T Consensus 303 g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 303 GLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred CcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 446899999999998 59999999998654
No 55
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.5e-38 Score=392.44 Aligned_cols=311 Identities=19% Similarity=0.180 Sum_probs=231.5
Q ss_pred HhhhcccceeeeeehhhhhhhhhhcC------cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccc
Q 003178 391 IKALTAAGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (842)
Q Consensus 391 ~~~L~~~g~~~~t~iQ~~aI~~il~g------~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PT 464 (842)
.+....++| .+|++|.+||+.++.+ +|++++|+||+|||.+|+.+++..+.. +.+++||+||
T Consensus 591 ~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-----------g~qvlvLvPT 658 (1147)
T PRK10689 591 QLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-----------HKQVAVLVPT 658 (1147)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-----------CCeEEEEeCc
Confidence 344456788 6999999999999987 899999999999999998888765532 2369999999
Q ss_pred hhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccc---cccCCCceEEecCccchhhhccccCCceEEEecceeeeec
Q 003178 465 RELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQR---RLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLD 541 (842)
Q Consensus 465 ReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~---~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlD 541 (842)
++||.|+++.+.+++... ++.+.+++|+.....+.. .+..+.++|+|+||+.|. .. ..+.++++||||
T Consensus 659 ~eLA~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~----~~----v~~~~L~lLVID 729 (1147)
T PRK10689 659 TLLAQQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ----SD----VKWKDLGLLIVD 729 (1147)
T ss_pred HHHHHHHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh----CC----CCHhhCCEEEEe
Confidence 999999999999877654 577777888766543332 233456899999996442 11 345689999999
Q ss_pred ccccccccccccchhhhhhcccccccceeecccCcchhhc-----cccceeeeecccccccccccccccccccCchhhHH
Q 003178 542 EADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQ 616 (842)
Q Consensus 542 EAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~-----~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~ 616 (842)
|+|++ |+. ....+..++.++|+++||||+++.... ..+...+..... ....+.+.+..... ..
T Consensus 730 Eahrf---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~----~r~~v~~~~~~~~~---~~ 797 (1147)
T PRK10689 730 EEHRF---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA----RRLAVKTFVREYDS---LV 797 (1147)
T ss_pred chhhc---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC----CCCCceEEEEecCc---HH
Confidence 99996 332 244566778899999999997665321 112222211100 00112222211111 11
Q ss_pred HHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH--hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccC
Q 003178 617 ILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARG 694 (842)
Q Consensus 617 ~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arG 694 (842)
....++.... .+++++|||+++..++.++..|.+. ++.+..+||+|++.+|.+++..|++|+.+|||||+++++|
T Consensus 798 ~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierG 874 (1147)
T PRK10689 798 VREAILREIL---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 874 (1147)
T ss_pred HHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcc
Confidence 1122233322 3568999999999999999999987 6789999999999999999999999999999999999999
Q ss_pred CCCCCcceeEEecCC-CChHHHHHHhhcCCCCCCCcceeEEecc
Q 003178 695 MDYPDVTSVVQVGIP-PDREQYIHRLGRTGREGKEGEGVLLLAP 737 (842)
Q Consensus 695 lDip~V~~VI~yd~P-~s~~~yiQRiGRaGR~G~~G~~i~ll~~ 737 (842)
||+|+|++||..+.. .+..+|+||+||+||.|+.|.|++++.+
T Consensus 875 IDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 999999999955443 3567899999999999999999998754
No 56
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=7.5e-38 Score=389.62 Aligned_cols=308 Identities=20% Similarity=0.261 Sum_probs=215.5
Q ss_pred EeeccCCCceeeehhHHHHHHHhhcccCc--ccccCceEEEEeccchhHHHHHHHHHHHhhh-----------cCCceeE
Q 003178 421 VKAKTGTGKSIAFLLPAIEAVLKATSSST--TQLVPPIYVLILCPTRELASQIAAEAIALLK-----------NHDGIGV 487 (842)
Q Consensus 421 i~A~TGSGKTlafllPil~~l~~~~~~~~--~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~-----------~~~~i~v 487 (842)
|+||||||||+||.||+|..++....... .....++++|||+|+++|+.|+++.++..+. ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999999986431100 0112356899999999999999998875321 2246889
Q ss_pred EEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccc----hhhhhhccc
Q 003178 488 LTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD----VENIVDCLP 563 (842)
Q Consensus 488 ~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~----i~~Il~~l~ 563 (842)
..++|++......+ +..++++|||+||++|..+|.+.. ...++++++|||||+|.|.+..++.. +..+...++
T Consensus 81 ~vrtGDt~~~eR~r-ll~~ppdILVTTPEsL~~LLtsk~--r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~ 157 (1490)
T PRK09751 81 GIRTGDTPAQERSK-LTRNPPDILITTPESLYLMLTSRA--RETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH 157 (1490)
T ss_pred EEEECCCCHHHHHH-HhcCCCCEEEecHHHHHHHHhhhh--hhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC
Confidence 99999988654333 434568999999999998876532 23578999999999999997644443 445555566
Q ss_pred ccccceeecccCcchhhccc---cceeeeecccccccccccccccccccCc-------------------hhhHHHH-HH
Q 003178 564 RRRQSLLFSATMPKELVLKR---EHTYIDTVGLGSVETPVKIKQSCLVAPH-------------------ELHFQIL-HH 620 (842)
Q Consensus 564 ~~~q~il~SATl~~~l~~~~---~~~~i~~v~~~~~~~~~~l~~~~~~~~~-------------------~~k~~~L-~~ 620 (842)
.+.|+|+||||+++.-.+.. ....+..+... ......+...+..... ......+ ..
T Consensus 158 ~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~-~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 158 TSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPP-AMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred CCCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCC-CCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 78899999999987421110 00001111100 0111111111100000 0000011 12
Q ss_pred HHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHh---------------------------------hhHHHHhhcCcc
Q 003178 621 LLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK---------------------------------MNVREMYSRKPQ 667 (842)
Q Consensus 621 lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~---------------------------------~~v~~lhg~~~~ 667 (842)
++.... ...++||||||+..|+.++..|++.. +.+..|||+|++
T Consensus 237 il~~i~---~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSk 313 (1490)
T PRK09751 237 ILDEVL---RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSK 313 (1490)
T ss_pred HHHHHh---cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCH
Confidence 222221 34689999999999999999997642 114679999999
Q ss_pred hhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCC-CCcceeEEe
Q 003178 668 LYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREG-KEGEGVLLL 735 (842)
Q Consensus 668 ~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G-~~G~~i~ll 735 (842)
.+|..+++.|++|+.++||||+++++||||++|++||||+.|.++.+|+||+|||||.. ..+.++++.
T Consensus 314 eeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 314 EQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred HHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999962 234445333
No 57
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=9e-38 Score=388.21 Aligned_cols=296 Identities=24% Similarity=0.252 Sum_probs=228.2
Q ss_pred cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
.|+ .|+++|.++++.++.|+|++++||||||||+ |.+|++..+... +.++|||+|||+||.|+++.+.
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~~----------g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAKK----------GKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHhc----------CCeEEEEeccHHHHHHHHHHHH
Confidence 477 7999999999999999999999999999996 566665444321 3479999999999999999999
Q ss_pred HhhhcCCceeEEEEecceeee-----eccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccc---
Q 003178 477 ALLKNHDGIGVLTLVGGTRFK-----VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD--- 548 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~-----~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld--- 548 (842)
.++... ++.+..++|+.... .....+..+.++|+|+||++|.+++.. +...++++|||||||+|++
T Consensus 145 ~l~~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~-----l~~~~~~~lVvDEaD~~L~~~k 218 (1176)
T PRK09401 145 KFGEKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE-----LPKKKFDFVFVDDVDAVLKSSK 218 (1176)
T ss_pred HHhhhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh-----ccccccCEEEEEChHHhhhccc
Confidence 998754 56777777765431 112233445689999999999988752 3345699999999999996
Q ss_pred --------cccc-cchhhhhhcccc------------------------cccceeecccCcch-hh--ccccceeeeecc
Q 003178 549 --------LGFR-KDVENIVDCLPR------------------------RRQSLLFSATMPKE-LV--LKREHTYIDTVG 592 (842)
Q Consensus 549 --------~gf~-~~i~~Il~~l~~------------------------~~q~il~SATl~~~-l~--~~~~~~~i~~v~ 592 (842)
+||. .++..++..++. .+|+++||||+++. +. +......+.. .
T Consensus 219 ~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v-~ 297 (1176)
T PRK09401 219 NIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEV-G 297 (1176)
T ss_pred chhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEe-c
Confidence 6785 577777777654 68999999999864 32 1222211111 1
Q ss_pred cccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhH---HHHHHHHHHHHhhhHHHHhhcCcchh
Q 003178 593 LGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMV---TSLLYLLLREMKMNVREMYSRKPQLY 669 (842)
Q Consensus 593 ~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~---~~~l~~~L~~~~~~v~~lhg~~~~~~ 669 (842)
.......++.+.++.++ .+...+..++... +.++||||+++.. ++.++..|+..|+.+..+||+|
T Consensus 298 -~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l-----~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l---- 365 (1176)
T PRK09401 298 -SPVFYLRNIVDSYIVDE--DSVEKLVELVKRL-----GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF---- 365 (1176)
T ss_pred -CcccccCCceEEEEEcc--cHHHHHHHHHHhc-----CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH----
Confidence 11123345666665544 5666677776543 3479999999887 9999999999999999999999
Q ss_pred hhhhhHHHhhcceEEEEe----ccccccCCCCCC-cceeEEecCCC------ChHHHHHHhhcCCC
Q 003178 670 RDRISEEFRASKRLILVT----SDVSARGMDYPD-VTSVVQVGIPP------DREQYIHRLGRTGR 724 (842)
Q Consensus 670 R~~v~~~F~~g~~~VLVa----Tdv~arGlDip~-V~~VI~yd~P~------s~~~yiQRiGRaGR 724 (842)
.+.++.|++|+++|||| ||+++||||+|+ |++|||||+|. ....|.||+||+..
T Consensus 366 -~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 366 -ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred -HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 23459999999999999 699999999999 89999999998 67889999999953
No 58
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=7.5e-37 Score=386.97 Aligned_cols=323 Identities=21% Similarity=0.239 Sum_probs=240.2
Q ss_pred hHhhhcc-cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHH
Q 003178 390 TIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (842)
Q Consensus 390 l~~~L~~-~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA 468 (842)
+.+.+++ .|| .|+++|+++++.++.|+|++++||||||||++++++++.... .+.++|||+||++||
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-----------~g~~aLVl~PTreLa 135 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-----------KGKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-----------cCCeEEEEECHHHHH
Confidence 3445554 799 699999999999999999999999999999976666553321 123799999999999
Q ss_pred HHHHHHHHHhhhcC-CceeEEEEecceeeeecc---ccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccc
Q 003178 469 SQIAAEAIALLKNH-DGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (842)
Q Consensus 469 ~Qi~~~l~~l~~~~-~~i~v~~l~Gg~~~~~~~---~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh 544 (842)
.|+++.+..++... .++.+..++|+.+...+. ..+..+.++|+|+||++|.+++... . ..++++|||||||
T Consensus 136 ~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~-~~~i~~iVVDEAD 210 (1638)
T PRK14701 136 KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----K-HLKFDFIFVDDVD 210 (1638)
T ss_pred HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----h-hCCCCEEEEECce
Confidence 99999999987643 246677788887654332 2344556899999999998876532 1 1578999999999
Q ss_pred cccc-----------cccccchhh----hhh----------------------ccccccc-ceeecccCcch---hhccc
Q 003178 545 HLLD-----------LGFRKDVEN----IVD----------------------CLPRRRQ-SLLFSATMPKE---LVLKR 583 (842)
Q Consensus 545 ~lld-----------~gf~~~i~~----Il~----------------------~l~~~~q-~il~SATl~~~---l~~~~ 583 (842)
+|++ +||.+++.. |+. .+++.+| ++++|||++.. +.+..
T Consensus 211 ~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~ 290 (1638)
T PRK14701 211 AFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYR 290 (1638)
T ss_pred eccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhh
Confidence 9986 578877764 332 2345556 56799999863 22222
Q ss_pred cceeeeecccccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhH---HHHHHHHHHHHhhhHHH
Q 003178 584 EHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMV---TSLLYLLLREMKMNVRE 660 (842)
Q Consensus 584 ~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~---~~~l~~~L~~~~~~v~~ 660 (842)
....+. +. ........+.+.++......+ ..+..++... +.++||||+|++. |+.++..|+..|+.+..
T Consensus 291 ~~l~f~-v~-~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-----g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~ 362 (1638)
T PRK14701 291 ELLGFE-VG-SGRSALRNIVDVYLNPEKIIK-EHVRELLKKL-----GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIEL 362 (1638)
T ss_pred cCeEEE-ec-CCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-----CCCeEEEEeccccchHHHHHHHHHHHCCCeEEE
Confidence 222211 11 112233456666665544444 4566666543 3578999999875 58999999999999999
Q ss_pred HhhcCcchhhhhhhHHHhhcceEEEEec----cccccCCCCCC-cceeEEecCCC---ChHHHHHHh-------------
Q 003178 661 MYSRKPQLYRDRISEEFRASKRLILVTS----DVSARGMDYPD-VTSVVQVGIPP---DREQYIHRL------------- 719 (842)
Q Consensus 661 lhg~~~~~~R~~v~~~F~~g~~~VLVaT----dv~arGlDip~-V~~VI~yd~P~---s~~~yiQRi------------- 719 (842)
+||+ |..+++.|++|++.||||| ++++||||+|+ |++|||||+|. +.+.|.|..
T Consensus 363 ~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~ 437 (1638)
T PRK14701 363 VSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKI 437 (1638)
T ss_pred ecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHh
Confidence 9995 8899999999999999999 59999999999 99999999999 888777765
Q ss_pred hcCCCCCCCcceeEEeccchhhh
Q 003178 720 GRTGREGKEGEGVLLLAPWEEYF 742 (842)
Q Consensus 720 GRaGR~G~~G~~i~ll~~~E~~~ 742 (842)
||+||.|.++.+++.+.+.+..+
T Consensus 438 ~~a~~~g~~~~~~~~~~~~~~~~ 460 (1638)
T PRK14701 438 EEELKEGIPIEGVLDVFPEDVEF 460 (1638)
T ss_pred hhhcccCCcchhHHHhHHHHHHH
Confidence 99999998888876555544433
No 59
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.9e-35 Score=322.91 Aligned_cols=342 Identities=23% Similarity=0.262 Sum_probs=277.1
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhh-hhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~-il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
...+++++++.+.+.|+..|++.+.|+|..++.+ ++.|+|.+|+++|+||||++.-++-+..++..+. +
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~----------K 263 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK----------K 263 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCC----------e
Confidence 4568999999999999999999999999999986 7789999999999999999988888888876432 6
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccc---cccCCCceEEecCccchhhhccccCCceEEEec
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQR---RLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~---~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~ 534 (842)
.|+|+|..+||+|-++.|+..+.. .++.+.+-+|...+..... .-....+||||+|++.+-.+|... ..+.+
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~-LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg----~~lgd 338 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSK-LGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG----KDLGD 338 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhc-ccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC----Ccccc
Confidence 899999999999999999998865 4888888888877765432 122335899999999987777765 45789
Q ss_pred ceeeeecccccccccccccchhhhhhc---ccccccceeecccCcchhhccccceeeeecccccccccccccccccccC-
Q 003178 535 LKMLVLDEADHLLDLGFRKDVENIVDC---LPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKIKQSCLVAP- 610 (842)
Q Consensus 535 l~~lVlDEAh~lld~gf~~~i~~Il~~---l~~~~q~il~SATl~~~l~~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~- 610 (842)
+..|||||+|.+-+...++.+.-++.. +-+..|+|.+|||+.+...+..... ...+ .....|+.+..+.+++.
T Consensus 339 iGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~-a~lV--~y~~RPVplErHlvf~~~ 415 (830)
T COG1202 339 IGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLG-AKLV--LYDERPVPLERHLVFARN 415 (830)
T ss_pred cceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhC-CeeE--eecCCCCChhHeeeeecC
Confidence 999999999999887767777666554 4457999999999977643332111 1111 22345777777777766
Q ss_pred chhhHHHHHHHHhhhhcC----CCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEE
Q 003178 611 HELHFQILHHLLKEHILG----TPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILV 686 (842)
Q Consensus 611 ~~~k~~~L~~lL~~~~~~----~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLV 686 (842)
...|...+..+.+.-... .-.+++|||++|++.|..++..|...|+.+.+||++|+..+|..+...|.++...++|
T Consensus 416 e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VV 495 (830)
T COG1202 416 ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVV 495 (830)
T ss_pred chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEe
Confidence 567777777777654322 2346999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCCCCCcceeEE---ecCC-CChHHHHHHhhcCCCCC--CCcceeEEeccc
Q 003178 687 TSDVSARGMDYPDVTSVVQ---VGIP-PDREQYIHRLGRTGREG--KEGEGVLLLAPW 738 (842)
Q Consensus 687 aTdv~arGlDip~V~~VI~---yd~P-~s~~~yiQRiGRaGR~G--~~G~~i~ll~~~ 738 (842)
+|-+++.|+|||.-.+|+. .+.- .++.+|.|++|||||.+ ..|+.|+++-|.
T Consensus 496 TTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 496 TTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred ehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999999998776652 3333 48999999999999987 468888887763
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2e-35 Score=330.81 Aligned_cols=291 Identities=23% Similarity=0.246 Sum_probs=198.3
Q ss_pred ceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeee
Q 003178 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497 (842)
Q Consensus 418 dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~ 497 (842)
+++|+||||||||++|++|++..+.... +.+++|++||++|+.|+++++..+++. .+..+.|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~---------~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~ 67 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQK---------ADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFK 67 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCC---------CCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHH
Confidence 5899999999999999999997754321 227999999999999999999998653 233333332210
Q ss_pred e-----c-------cccccC-----CCceEEecCccchhhhcccc-CCceEEEe--cceeeeecccccccccccccchhh
Q 003178 498 V-----D-------QRRLES-----DPCQILVATPGRLLDHIENK-SGLSVRLM--GLKMLVLDEADHLLDLGFRKDVEN 557 (842)
Q Consensus 498 ~-----~-------~~~l~~-----~~~~IIVaTPgrLl~~L~~~-~~~~~~L~--~l~~lVlDEAh~lld~gf~~~i~~ 557 (842)
. + ...... ...+|+|+||++++..+... ......+. ..++|||||||.+.+.++.. +..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~ 146 (358)
T TIGR01587 68 RIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILA 146 (358)
T ss_pred HHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHH
Confidence 0 0 000000 12579999999998776542 11111111 23789999999999875443 566
Q ss_pred hhhccc-ccccceeecccCcchhhcccc-ceeee-eccccccccccccccccccc--CchhhHHHHHHHHhhhhcCCCCc
Q 003178 558 IVDCLP-RRRQSLLFSATMPKELVLKRE-HTYID-TVGLGSVETPVKIKQSCLVA--PHELHFQILHHLLKEHILGTPDY 632 (842)
Q Consensus 558 Il~~l~-~~~q~il~SATl~~~l~~~~~-~~~i~-~v~~~~~~~~~~l~~~~~~~--~~~~k~~~L~~lL~~~~~~~~~~ 632 (842)
++..++ ...|+++||||+|..+..... ..... ..............+.+... ....+...+..++... ..+.
T Consensus 147 ~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~ 223 (358)
T TIGR01587 147 VLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFI---KKGG 223 (358)
T ss_pred HHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHh---hCCC
Confidence 665554 468999999999965421111 00000 00000000000011222111 1123445555555432 2457
Q ss_pred eEEEEecchhHHHHHHHHHHHHhh--hHHHHhhcCcchhhhhh----hHHHhhcceEEEEeccccccCCCCCCcceeEEe
Q 003178 633 KVIVFCSTGMVTSLLYLLLREMKM--NVREMYSRKPQLYRDRI----SEEFRASKRLILVTSDVSARGMDYPDVTSVVQV 706 (842)
Q Consensus 633 kiIVF~~s~~~~~~l~~~L~~~~~--~v~~lhg~~~~~~R~~v----~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~y 706 (842)
++||||+|++.++.++..|++.+. .+..+||++++.+|.++ ++.|++|+..|||||+++++|+|++ +++||++
T Consensus 224 ~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~ 302 (358)
T TIGR01587 224 KIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITE 302 (358)
T ss_pred eEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEc
Confidence 999999999999999999988765 48999999999999764 8899999999999999999999995 8899998
Q ss_pred cCCCChHHHHHHhhcCCCCCCC
Q 003178 707 GIPPDREQYIHRLGRTGREGKE 728 (842)
Q Consensus 707 d~P~s~~~yiQRiGRaGR~G~~ 728 (842)
..| +.+|+||+||+||.|+.
T Consensus 303 ~~~--~~~~iqr~GR~gR~g~~ 322 (358)
T TIGR01587 303 LAP--IDSLIQRLGRLHRYGRK 322 (358)
T ss_pred CCC--HHHHHHHhccccCCCCC
Confidence 877 78999999999999854
No 61
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=8.9e-35 Score=309.24 Aligned_cols=273 Identities=27% Similarity=0.383 Sum_probs=205.5
Q ss_pred eEEEEeccchhHHHHHHHHHHHhhhcC--CceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEe
Q 003178 456 IYVLILCPTRELASQIAAEAIALLKNH--DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 456 ~~~LIL~PTReLA~Qi~~~l~~l~~~~--~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
+.++|+-|.||||.|.++.++++-.+. +.++..+++||.....+...+. ++.+|+|+|||||.+.+... ...+.
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~-~g~~ivvGtpgRl~~~is~g---~~~lt 362 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLK-DGTHIVVGTPGRLLQPISKG---LVTLT 362 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhh-cCceeeecCchhhhhhhhcc---ceeee
Confidence 679999999999999999887765443 3445567888877665555554 56899999999999999876 46788
Q ss_pred cceeeeecccccccccccccchhhhhhcccc------cccceeecccCcchh----h--ccccceeeeeccccccccccc
Q 003178 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPR------RRQSLLFSATMPKEL----V--LKREHTYIDTVGLGSVETPVK 601 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~------~~q~il~SATl~~~l----~--~~~~~~~i~~v~~~~~~~~~~ 601 (842)
.+.++|+||||-++..|+.+.|..+...+|. ..|.+++|||+..-- . +..-+.+++.-+.. ..|..
T Consensus 363 ~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD--~vpet 440 (725)
T KOG0349|consen 363 HCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED--LVPET 440 (725)
T ss_pred eeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccc--ccchh
Confidence 9999999999999999988888877777764 579999999974320 0 11111222211111 11111
Q ss_pred cccccccc-------------------------------Cc---hhhH-----HHHHHHHhhhhcCCCCceEEEEecchh
Q 003178 602 IKQSCLVA-------------------------------PH---ELHF-----QILHHLLKEHILGTPDYKVIVFCSTGM 642 (842)
Q Consensus 602 l~~~~~~~-------------------------------~~---~~k~-----~~L~~lL~~~~~~~~~~kiIVF~~s~~ 642 (842)
+.+....+ .+ .... +.....++++ ...++||||.|+.
T Consensus 441 vHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h----~mdkaiifcrtk~ 516 (725)
T KOG0349|consen 441 VHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH----AMDKAIIFCRTKQ 516 (725)
T ss_pred hccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh----ccCceEEEEeccc
Confidence 11111000 00 0001 1111222222 4568999999999
Q ss_pred HHHHHHHHHHHHh---hhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHh
Q 003178 643 VTSLLYLLLREMK---MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRL 719 (842)
Q Consensus 643 ~~~~l~~~L~~~~---~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRi 719 (842)
.|+.|.+++++.+ +.++++||+..+.+|...++.|+.+.+++|||||+++|||||.++-++||..+|.+...|+||+
T Consensus 517 dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhri 596 (725)
T KOG0349|consen 517 DCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRI 596 (725)
T ss_pred cchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhh
Confidence 9999999999874 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCcceeEEeccc
Q 003178 720 GRTGREGKEGEGVLLLAPW 738 (842)
Q Consensus 720 GRaGR~G~~G~~i~ll~~~ 738 (842)
||.||+.+-|.+|.++...
T Consensus 597 grvgraermglaislvat~ 615 (725)
T KOG0349|consen 597 GRVGRAERMGLAISLVATV 615 (725)
T ss_pred hccchhhhcceeEEEeecc
Confidence 9999999999999988753
No 62
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.1e-34 Score=337.41 Aligned_cols=319 Identities=20% Similarity=0.192 Sum_probs=229.2
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.||++|..+++.++.|+ |+.+.||+|||++|++|++.+.... ..++|++||++||.|.++++..++.
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G-----------~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAG-----------LPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcC-----------CeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 58999999999999999 9999999999999999999775432 3699999999999999999999987
Q ss_pred cCCceeEEEEecceeeeeccccccCCCceEEecCccch-hhhccccCCc----------------------eEEEeccee
Q 003178 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGL----------------------SVRLMGLKM 537 (842)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrL-l~~L~~~~~~----------------------~~~L~~l~~ 537 (842)
.. ++.+.+++|+.+.. .+... .+++|+|+|...| .|.|..+-.. ...+..+.+
T Consensus 170 ~l-Glsv~~i~gg~~~~--~r~~~-y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 170 AL-GLTVGCVVEDQSPD--ERRAA-YGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred hc-CCEEEEEeCCCCHH--HHHHH-cCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 65 89999999997532 23322 3489999999988 5565443111 112356889
Q ss_pred eeeccccccc-ccccc----------c-------chhhhhhcccc--------c--------------------------
Q 003178 538 LVLDEADHLL-DLGFR----------K-------DVENIVDCLPR--------R-------------------------- 565 (842)
Q Consensus 538 lVlDEAh~ll-d~gf~----------~-------~i~~Il~~l~~--------~-------------------------- 565 (842)
.||||||.++ |.... . ....+...+.. .
T Consensus 246 aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~ 325 (656)
T PRK12898 246 AIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWR 325 (656)
T ss_pred eEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcc
Confidence 9999999865 21100 0 00000000000 0
Q ss_pred --------------------------------------------------------------------------------
Q 003178 566 -------------------------------------------------------------------------------- 565 (842)
Q Consensus 566 -------------------------------------------------------------------------------- 565 (842)
T Consensus 326 ~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~F 405 (656)
T PRK12898 326 GAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFF 405 (656)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHH
Confidence
Q ss_pred ---ccceeecccCcchhhccccceeeeeccccccc-ccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecch
Q 003178 566 ---RQSLLFSATMPKELVLKREHTYIDTVGLGSVE-TPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTG 641 (842)
Q Consensus 566 ---~q~il~SATl~~~l~~~~~~~~i~~v~~~~~~-~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~ 641 (842)
.++.+||||.+...........++++.+.... ......+.++.+....|...+...+..... .+.++||||+|+
T Consensus 406 r~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~--~~~pvLIft~t~ 483 (656)
T PRK12898 406 RRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHA--QGRPVLVGTRSV 483 (656)
T ss_pred HhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHh--cCCCEEEEeCcH
Confidence 12345666655432111111111111111111 111123344556667788888888876432 345799999999
Q ss_pred hHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCC---Ccc-----eeEEecCCCChH
Q 003178 642 MVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYP---DVT-----SVVQVGIPPDRE 713 (842)
Q Consensus 642 ~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip---~V~-----~VI~yd~P~s~~ 713 (842)
..++.++..|.+.++++..|||.+. +|...+..|+.+...|+||||+++||+||+ +|. +||+|++|.+..
T Consensus 484 ~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r 561 (656)
T PRK12898 484 AASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSAR 561 (656)
T ss_pred HHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHH
Confidence 9999999999999999999999855 566666667766778999999999999999 776 999999999999
Q ss_pred HHHHHhhcCCCCCCCcceeEEeccchh
Q 003178 714 QYIHRLGRTGREGKEGEGVLLLAPWEE 740 (842)
Q Consensus 714 ~yiQRiGRaGR~G~~G~~i~ll~~~E~ 740 (842)
.|+||+|||||.|.+|.+++|++..|.
T Consensus 562 ~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 562 IDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHHHhcccccCCCCCeEEEEEechhHH
Confidence 999999999999999999999998664
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=3.1e-34 Score=333.97 Aligned_cols=306 Identities=15% Similarity=0.139 Sum_probs=219.6
Q ss_pred eeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
...|+++|.++++.++.+++.++++|||+|||+++.. +...+.... ..++|||+||++|+.|+.+.+.++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~~---------~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLENY---------EGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhcC---------CCeEEEEECcHHHHHHHHHHHHHh
Confidence 3479999999999999999999999999999996543 222222221 126999999999999999999987
Q ss_pred hhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhh
Q 003178 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (842)
Q Consensus 479 ~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~I 558 (842)
+... ...+..+.+|.... ...+|+|+||++|.+... ..+.++++||+||||++... .+..+
T Consensus 182 ~~~~-~~~~~~i~~g~~~~--------~~~~I~VaT~qsl~~~~~------~~~~~~~~iIvDEaH~~~~~----~~~~i 242 (501)
T PHA02558 182 RLFP-REAMHKIYSGTAKD--------TDAPIVVSTWQSAVKQPK------EWFDQFGMVIVDECHLFTGK----SLTSI 242 (501)
T ss_pred cccc-ccceeEEecCcccC--------CCCCEEEeeHHHHhhchh------hhccccCEEEEEchhcccch----hHHHH
Confidence 6432 33444555554321 236899999999976542 13568999999999998754 45667
Q ss_pred hhcccccccceeecccCcchhh----c---ccccee-ee---ecccccc--------c---cccc--------ccc-ccc
Q 003178 559 VDCLPRRRQSLLFSATMPKELV----L---KREHTY-ID---TVGLGSV--------E---TPVK--------IKQ-SCL 607 (842)
Q Consensus 559 l~~l~~~~q~il~SATl~~~l~----~---~~~~~~-i~---~v~~~~~--------~---~~~~--------l~~-~~~ 607 (842)
+..+++.+++++||||++.... + ...... +. .+..... . .... ... ...
T Consensus 243 l~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
T PHA02558 243 ITKLDNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKY 322 (501)
T ss_pred HHhhhccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHH
Confidence 7777777899999999865311 0 000000 00 0000000 0 0000 000 001
Q ss_pred ccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEe
Q 003178 608 VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVT 687 (842)
Q Consensus 608 ~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVa 687 (842)
......+...+..++.... ..+.++||||.+.++++.+++.|+..+.++..+||++++.+|..+++.|++|+..||||
T Consensus 323 l~~~~~Rn~~I~~~~~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLva 400 (501)
T PHA02558 323 ITSHTKRNKWIANLALKLA--KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVA 400 (501)
T ss_pred HhccHHHHHHHHHHHHHHH--hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 1222333444444444433 24568999999999999999999999999999999999999999999999999999999
Q ss_pred c-cccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEe
Q 003178 688 S-DVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLL 735 (842)
Q Consensus 688 T-dv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll 735 (842)
| +++++|+|+|++++||++.++.+...|+||+||++|.+..+...+++
T Consensus 401 T~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 401 SYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred EcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 8 89999999999999999999999999999999999988655444444
No 64
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.9e-34 Score=347.41 Aligned_cols=346 Identities=24% Similarity=0.307 Sum_probs=259.2
Q ss_pred CchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchh
Q 003178 387 SPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE 466 (842)
Q Consensus 387 ~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTRe 466 (842)
...+..+|.+.|+..++.+|.+|+..+.+|+||||+.+||||||++|++|+++++++.... ++|+|.||++
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a---------~AL~lYPtnA 126 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA---------RALLLYPTNA 126 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc---------cEEEEechhh
Confidence 3445778888899999999999999999999999999999999999999999999987543 6899999999
Q ss_pred HHHHHHHHHHHhhhcCC-ceeEEEEecceeeeeccccccCCCceEEecCccchhh-hccccCCceEEEecceeeeecccc
Q 003178 467 LASQIAAEAIALLKNHD-GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLD-HIENKSGLSVRLMGLKMLVLDEAD 544 (842)
Q Consensus 467 LA~Qi~~~l~~l~~~~~-~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~-~L~~~~~~~~~L~~l~~lVlDEAh 544 (842)
||+.+.+++.++....+ ++.+...+|++.... .+.+..++++||++||.+|.. +|.+...+...+.++++|||||+|
T Consensus 127 La~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~-r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH 205 (851)
T COG1205 127 LANDQAERLRELISDLPGKVTFGRYTGDTPPEE-RRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH 205 (851)
T ss_pred hHhhHHHHHHHHHHhCCCcceeeeecCCCChHH-HHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce
Confidence 99999999999998776 577777778776543 335556779999999999987 555555555667889999999999
Q ss_pred cccccccccchhhhh-------hcccccccceeecccCcchhhccccceeeeecc-cccccccccccccccccC------
Q 003178 545 HLLDLGFRKDVENIV-------DCLPRRRQSLLFSATMPKELVLKREHTYIDTVG-LGSVETPVKIKQSCLVAP------ 610 (842)
Q Consensus 545 ~lld~gf~~~i~~Il-------~~l~~~~q~il~SATl~~~l~~~~~~~~i~~v~-~~~~~~~~~l~~~~~~~~------ 610 (842)
..-.. |+..+..++ ...+...|+|+.|||+.+.-............. +.....+......+...+
T Consensus 206 tYrGv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~ 284 (851)
T COG1205 206 TYRGV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELA 284 (851)
T ss_pred ecccc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhh
Confidence 86442 555554444 344457899999999977632211111000000 111222222222222222
Q ss_pred ---chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHH----HHHHHHh----hhHHHHhhcCcchhhhhhhHHHhh
Q 003178 611 ---HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLY----LLLREMK----MNVREMYSRKPQLYRDRISEEFRA 679 (842)
Q Consensus 611 ---~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~----~~L~~~~----~~v~~lhg~~~~~~R~~v~~~F~~ 679 (842)
.......+..++...+ ..+.++|||+.++..++.++ ..+...+ ..+..+++++...+|.++...|++
T Consensus 285 ~~~r~s~~~~~~~~~~~~~--~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~ 362 (851)
T COG1205 285 ESIRRSALAELATLAALLV--RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE 362 (851)
T ss_pred hhcccchHHHHHHHHHHHH--HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc
Confidence 1133333333433333 24679999999999999997 3333334 568899999999999999999999
Q ss_pred cceEEEEeccccccCCCCCCcceeEEecCCC-ChHHHHHHhhcCCCCCCCcceeEEec--cchhhhhcc
Q 003178 680 SKRLILVTSDVSARGMDYPDVTSVVQVGIPP-DREQYIHRLGRTGREGKEGEGVLLLA--PWEEYFLDD 745 (842)
Q Consensus 680 g~~~VLVaTdv~arGlDip~V~~VI~yd~P~-s~~~yiQRiGRaGR~G~~G~~i~ll~--~~E~~~l~~ 745 (842)
|+..++++|++++-||||.+++.||.++.|. +..+++||+||+||.++.+..++++. +.+.+|+..
T Consensus 363 g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~ 431 (851)
T COG1205 363 GELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRH 431 (851)
T ss_pred CCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhC
Confidence 9999999999999999999999999999999 89999999999999996666665554 244555543
No 65
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=5.7e-34 Score=342.46 Aligned_cols=372 Identities=20% Similarity=0.220 Sum_probs=261.8
Q ss_pred hcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHH
Q 003178 394 LTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAA 473 (842)
Q Consensus 394 L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~ 473 (842)
...+|+..+++.|.++|..++.|+|++|.+|||.||++||+||++ +.. ...|||.|...|+..+..
T Consensus 257 ~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~--l~~------------gitvVISPL~SLm~DQv~ 322 (941)
T KOG0351|consen 257 KEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPAL--LLG------------GVTVVISPLISLMQDQVT 322 (941)
T ss_pred HHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccc--ccC------------CceEEeccHHHHHHHHHH
Confidence 345799999999999999999999999999999999999999997 221 158999999999887665
Q ss_pred HHHHhhhcCCceeEEEEecceeee---eccccccCC--CceEEecCccchhhhccccCCceEEEec---ceeeeeccccc
Q 003178 474 EAIALLKNHDGIGVLTLVGGTRFK---VDQRRLESD--PCQILVATPGRLLDHIENKSGLSVRLMG---LKMLVLDEADH 545 (842)
Q Consensus 474 ~l~~l~~~~~~i~v~~l~Gg~~~~---~~~~~l~~~--~~~IIVaTPgrLl~~L~~~~~~~~~L~~---l~~lVlDEAh~ 545 (842)
.+.. .+|....+.++.... .....+..+ .++|++.||+.+...-.-. .....+.. +.++||||||+
T Consensus 323 ~L~~-----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~-~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 323 HLSK-----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLL-ESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred hhhh-----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchh-hHHHhccCCCeeEEEEecHHHH
Confidence 5522 267777777766543 122334444 6899999999886422111 00122333 78999999999
Q ss_pred ccccc--cccchhhhhhccc--ccccceeecccCcchhhcc--ccceeeeecccccccccccccccccccCch--hhHHH
Q 003178 546 LLDLG--FRKDVENIVDCLP--RRRQSLLFSATMPKELVLK--REHTYIDTVGLGSVETPVKIKQSCLVAPHE--LHFQI 617 (842)
Q Consensus 546 lld~g--f~~~i~~Il~~l~--~~~q~il~SATl~~~l~~~--~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~--~k~~~ 617 (842)
+..|| |++.+..+..... ....+|.+|||.+..+... ......+..-........++ +|.+.+.. .....
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL--~yeV~~k~~~~~~~~ 474 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNL--KYEVSPKTDKDALLD 474 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCc--eEEEEeccCccchHH
Confidence 99998 8998887644322 2378999999997764211 11111111111111122222 22222222 22223
Q ss_pred HHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCC
Q 003178 618 LHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDY 697 (842)
Q Consensus 618 L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDi 697 (842)
+...+..+ .+...+||||.++.+|+.+...|+..++.+..||++|+..+|..+...|..++++|+|||=++++|||.
T Consensus 475 ~~~~~~~~---~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK 551 (941)
T KOG0351|consen 475 ILEESKLR---HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDK 551 (941)
T ss_pred HHHHhhhc---CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCC
Confidence 33333333 466789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCCCCCCCCCCCCCChHHHHHHHHhhhccchh
Q 003178 698 PDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKDLPLDKLQLPHLNPEIQLQMDNHMAKIDNN 777 (842)
Q Consensus 698 p~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~~~l~~~~~~~~~~~~~~~i~~~l~~~~~~ 777 (842)
|+|+.||||.+|.+.+.|+|-+|||||.|....|++|+...+..-++.+-.-.-....... .........+..++++
T Consensus 552 ~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~~~~~~~~~---~~~~~~l~~~~~yCen 628 (941)
T KOG0351|consen 552 PDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSGNRLSGVKK---FTRLLELVQVVTYCEN 628 (941)
T ss_pred CceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHccccccchhh---ccchhhHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999876544433211111111111 1111222333445555
Q ss_pred hHHHHHHHHHhhccch
Q 003178 778 VKEAAYHAWLGYYNSI 793 (842)
Q Consensus 778 ~~~~a~~s~l~yy~~~ 793 (842)
...++..-.+.||...
T Consensus 629 ~t~crr~~~l~~fge~ 644 (941)
T KOG0351|consen 629 ETDCRRKQILEYFGEE 644 (941)
T ss_pred ccchhHHHHHHhcccc
Confidence 5556666666666554
No 66
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=336.78 Aligned_cols=330 Identities=22% Similarity=0.265 Sum_probs=249.3
Q ss_pred CCchhHhhhcccceeeeeehhhhhhhhh-hcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccc
Q 003178 386 ISPLTIKALTAAGYIQMTRVQEATLSAC-LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (842)
Q Consensus 386 l~~~l~~~L~~~g~~~~t~iQ~~aI~~i-l~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PT 464 (842)
+.+.+.+.++..++..+.+-|+.++... ..++|++|++|||||||+.+++.+++.+.+.+ .+++||||+
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~----------~k~vYivPl 85 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGG----------GKVVYIVPL 85 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcC----------CcEEEEeCh
Confidence 5667777788888878888777777654 45699999999999999999999999888752 269999999
Q ss_pred hhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccc
Q 003178 465 RELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (842)
Q Consensus 465 ReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh 544 (842)
|+||.|+++++.++-. + |++|...+|+..... ..+ ..++|||+||+++-..+.+... .+..+++|||||+|
T Consensus 86 kALa~Ek~~~~~~~~~-~-GirV~~~TgD~~~~~--~~l--~~~~ViVtT~EK~Dsl~R~~~~---~~~~V~lvViDEiH 156 (766)
T COG1204 86 KALAEEKYEEFSRLEE-L-GIRVGISTGDYDLDD--ERL--ARYDVIVTTPEKLDSLTRKRPS---WIEEVDLVVIDEIH 156 (766)
T ss_pred HHHHHHHHHHhhhHHh-c-CCEEEEecCCcccch--hhh--ccCCEEEEchHHhhHhhhcCcc---hhhcccEEEEeeee
Confidence 9999999999994433 2 899999999987543 222 2389999999999888777643 46789999999999
Q ss_pred cccccccccchhhhhhccccc---ccceeecccCcchhhcc----ccceeeeecccccccccccccccccccCch-----
Q 003178 545 HLLDLGFRKDVENIVDCLPRR---RQSLLFSATMPKELVLK----REHTYIDTVGLGSVETPVKIKQSCLVAPHE----- 612 (842)
Q Consensus 545 ~lld~gf~~~i~~Il~~l~~~---~q~il~SATl~~~l~~~----~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~----- 612 (842)
.+.+...++.++.|+...... .|++.+|||+|+...+. .... ...........+....+.+......
T Consensus 157 ~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~ 235 (766)
T COG1204 157 LLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWP 235 (766)
T ss_pred ecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCcccccc
Confidence 999887788888888766553 79999999999873221 1111 1111111111222222222222211
Q ss_pred -hhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH-------------------------------------
Q 003178 613 -LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM------------------------------------- 654 (842)
Q Consensus 613 -~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~------------------------------------- 654 (842)
.....+..++...+ ..++++||||+|++.+...+..|+..
T Consensus 236 ~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v 313 (766)
T COG1204 236 LLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELV 313 (766)
T ss_pred ccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHH
Confidence 12233333333333 35779999999999999999988831
Q ss_pred hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeE----Eec-----CCCChHHHHHHhhcCCCC
Q 003178 655 KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVV----QVG-----IPPDREQYIHRLGRTGRE 725 (842)
Q Consensus 655 ~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI----~yd-----~P~s~~~yiQRiGRaGR~ 725 (842)
...+..+|++|+..+|..+.+.|+.|+++||+||.+++.|+|+|.-++|| -|+ .+.++.+|+|++|||||.
T Consensus 314 ~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRP 393 (766)
T COG1204 314 LRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRP 393 (766)
T ss_pred HhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCC
Confidence 12578999999999999999999999999999999999999999988888 577 677899999999999999
Q ss_pred C--CCcceeEEecc
Q 003178 726 G--KEGEGVLLLAP 737 (842)
Q Consensus 726 G--~~G~~i~ll~~ 737 (842)
| ..|.++++...
T Consensus 394 g~d~~G~~~i~~~~ 407 (766)
T COG1204 394 GYDDYGEAIILATS 407 (766)
T ss_pred CcCCCCcEEEEecC
Confidence 8 45777777733
No 67
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=3.9e-34 Score=356.28 Aligned_cols=289 Identities=23% Similarity=0.292 Sum_probs=211.8
Q ss_pred HhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHH
Q 003178 391 IKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (842)
Q Consensus 391 ~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Q 470 (842)
.+.+.+.....|+++|+.+++.++.|+|++++||||||||+ |.+|++..+... +.++|||+|||+||.|
T Consensus 68 ~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~----------g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 68 EEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK----------GKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc----------CCeEEEEeCHHHHHHH
Confidence 44454434447999999999999999999999999999997 777777655332 2479999999999999
Q ss_pred HHHHHHHhhhcCCceeE---EEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccc
Q 003178 471 IAAEAIALLKNHDGIGV---LTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (842)
Q Consensus 471 i~~~l~~l~~~~~~i~v---~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh 544 (842)
+++.+..++... ++.+ .+++|+.+.... ...+..++++|+|+||++|.+++..- .. ++++|||||||
T Consensus 137 i~~~l~~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l-----~~-~~~~iVvDEaD 209 (1171)
T TIGR01054 137 VAEKISSLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL-----GP-KFDFIFVDDVD 209 (1171)
T ss_pred HHHHHHHHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh-----cC-CCCEEEEeChH
Confidence 999999987643 3332 346677665432 22344556899999999999877542 11 78999999999
Q ss_pred cccc-----------cccccc-hhhhh----------------------hccccccc--ceeeccc-Ccchhh--ccccc
Q 003178 545 HLLD-----------LGFRKD-VENIV----------------------DCLPRRRQ--SLLFSAT-MPKELV--LKREH 585 (842)
Q Consensus 545 ~lld-----------~gf~~~-i~~Il----------------------~~l~~~~q--~il~SAT-l~~~l~--~~~~~ 585 (842)
+|++ +||..+ +..++ ..+++.+| +++|||| .|..+. +....
T Consensus 210 ~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~l 289 (1171)
T TIGR01054 210 ALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFREL 289 (1171)
T ss_pred hhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccc
Confidence 9998 688764 44433 23455566 5668999 455432 22222
Q ss_pred eeeeecccccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecch---hHHHHHHHHHHHHhhhHHHHh
Q 003178 586 TYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTG---MVTSLLYLLLREMKMNVREMY 662 (842)
Q Consensus 586 ~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~---~~~~~l~~~L~~~~~~v~~lh 662 (842)
..+.. . .......++.+.++.... +...+..++... +.++||||+++ +.|+.++..|+..|+.+..+|
T Consensus 290 l~~~v-~-~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-----~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lh 360 (1171)
T TIGR01054 290 LGFEV-G-GGSDTLRNVVDVYVEDED--LKETLLEIVKKL-----GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYH 360 (1171)
T ss_pred cceEe-c-CccccccceEEEEEeccc--HHHHHHHHHHHc-----CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEe
Confidence 11111 1 112233455565554332 234555666542 35799999999 999999999999999999999
Q ss_pred hcCcchhhhhhhHHHhhcceEEEEe----ccccccCCCCCC-cceeEEecCCC
Q 003178 663 SRKPQLYRDRISEEFRASKRLILVT----SDVSARGMDYPD-VTSVVQVGIPP 710 (842)
Q Consensus 663 g~~~~~~R~~v~~~F~~g~~~VLVa----Tdv~arGlDip~-V~~VI~yd~P~ 710 (842)
|++++ .+++.|++|+++|||| ||+++||||+|+ |++|||||+|.
T Consensus 361 g~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 361 ATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred CCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 99963 6899999999999999 599999999999 89999999995
No 68
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1e-33 Score=335.83 Aligned_cols=323 Identities=17% Similarity=0.196 Sum_probs=226.4
Q ss_pred cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
+|. .|+++|..+++.++.|+ |+.+.||+|||++|++|++...+.. ..++|++||++||.|.++++.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G-----------~~v~VvTpt~~LA~qd~e~~~ 140 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEG-----------KGVHLITVNDYLAKRDAEEMG 140 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcC-----------CCeEEEeCCHHHHHHHHHHHH
Confidence 355 69999999999888876 9999999999999999998665542 258999999999999999999
Q ss_pred HhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccch-hhhccccC---CceEEEecceeeeeccccccc-cccc
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKS---GLSVRLMGLKMLVLDEADHLL-DLGF 551 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrL-l~~L~~~~---~~~~~L~~l~~lVlDEAh~ll-d~gf 551 (842)
.++... ++.+.+++|+.+...+.+.. ..++|+|+||++| .++|.... .....+..+.++||||||.|+ |...
T Consensus 141 ~l~~~l-Gl~v~~i~g~~~~~~~r~~~--y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~ 217 (790)
T PRK09200 141 QVYEFL-GLTVGLNFSDIDDASEKKAI--YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQ 217 (790)
T ss_pred HHHhhc-CCeEEEEeCCCCcHHHHHHh--cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCC
Confidence 998875 89999999998743222222 2389999999999 55554321 111345789999999999976 3211
Q ss_pred cc---------------chhhhhhcccc--------cccce---------------------------------------
Q 003178 552 RK---------------DVENIVDCLPR--------RRQSL--------------------------------------- 569 (842)
Q Consensus 552 ~~---------------~i~~Il~~l~~--------~~q~i--------------------------------------- 569 (842)
.+ .+..++..+.. ..+.+
T Consensus 218 tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~ 297 (790)
T PRK09200 218 TPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHV 297 (790)
T ss_pred CceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHH
Confidence 11 01111111110 00111
Q ss_pred ----------------------------------------------------------------------eecccCcchh
Q 003178 570 ----------------------------------------------------------------------LFSATMPKEL 579 (842)
Q Consensus 570 ----------------------------------------------------------------------l~SATl~~~l 579 (842)
+||.|...+-
T Consensus 298 ~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~ 377 (790)
T PRK09200 298 LFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEE 377 (790)
T ss_pred HhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHH
Confidence 1111110000
Q ss_pred hccccceeeeeccccccccccccc-ccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhH
Q 003178 580 VLKREHTYIDTVGLGSVETPVKIK-QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNV 658 (842)
Q Consensus 580 ~~~~~~~~i~~v~~~~~~~~~~l~-~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v 658 (842)
.......-++.+.++......... ...++.....|...+...+.... ..+.++||||+|+..++.++..|.+.++++
T Consensus 378 ~e~~~~Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~--~~~~pvLIf~~t~~~se~l~~~L~~~gi~~ 455 (790)
T PRK09200 378 KEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERH--ETGRPVLIGTGSIEQSETFSKLLDEAGIPH 455 (790)
T ss_pred HHHHHHhCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHCCCCE
Confidence 000000000000000000000000 11233445667777777776532 246799999999999999999999999999
Q ss_pred HHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCC---CCcc-----eeEEecCCCChHHHHHHhhcCCCCCCCcc
Q 003178 659 REMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDY---PDVT-----SVVQVGIPPDREQYIHRLGRTGREGKEGE 730 (842)
Q Consensus 659 ~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDi---p~V~-----~VI~yd~P~s~~~yiQRiGRaGR~G~~G~ 730 (842)
..+||.+.+.++..+...++.| .|+||||+++||+|| |+|. +||+|++|.+...|+||+|||||.|.+|.
T Consensus 456 ~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~ 533 (790)
T PRK09200 456 NLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGS 533 (790)
T ss_pred EEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCee
Confidence 9999999988888777777666 799999999999999 7999 99999999999999999999999999999
Q ss_pred eeEEeccchh
Q 003178 731 GVLLLAPWEE 740 (842)
Q Consensus 731 ~i~ll~~~E~ 740 (842)
++.|++..|.
T Consensus 534 s~~~is~eD~ 543 (790)
T PRK09200 534 SQFFISLEDD 543 (790)
T ss_pred EEEEEcchHH
Confidence 9999998664
No 69
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-33 Score=298.49 Aligned_cols=333 Identities=19% Similarity=0.202 Sum_probs=237.6
Q ss_pred hhHhhhcc-cceeee-eehhhhhhhhhhcC-cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccch
Q 003178 389 LTIKALTA-AGYIQM-TRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (842)
Q Consensus 389 ~l~~~L~~-~g~~~~-t~iQ~~aI~~il~g-~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTR 465 (842)
.+.++|++ +|+.++ ++.|++|+..+..+ +||.|++|||+||+|||+||+|-+ . + ..||++|..
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~----------g-ITIV~SPLi 71 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---G----------G-ITIVISPLI 71 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---C----------C-eEEEehHHH
Confidence 34556665 477654 78999999988775 699999999999999999999722 1 1 589999999
Q ss_pred hHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---ccccc--CCCceEEecCccchh-----hhccccCCceEEEecc
Q 003178 466 ELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLE--SDPCQILVATPGRLL-----DHIENKSGLSVRLMGL 535 (842)
Q Consensus 466 eLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~--~~~~~IIVaTPgrLl-----~~L~~~~~~~~~L~~l 535 (842)
+|...+.+.+.++ .+.+..+....+.... ...|. +....|++.||+... ++|..- .+-..+
T Consensus 72 ALIkDQiDHL~~L-----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L----~~r~~L 142 (641)
T KOG0352|consen 72 ALIKDQIDHLKRL-----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGL----ANRDVL 142 (641)
T ss_pred HHHHHHHHHHHhc-----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHH----hhhcee
Confidence 9999888887776 2333333222221111 11111 224689999999753 222211 112358
Q ss_pred eeeeecccccccccc--cccchhhhhhc--ccccccceeecccCcchhhc--cccceeeeeccccccccccccccccccc
Q 003178 536 KMLVLDEADHLLDLG--FRKDVENIVDC--LPRRRQSLLFSATMPKELVL--KREHTYIDTVGLGSVETPVKIKQSCLVA 609 (842)
Q Consensus 536 ~~lVlDEAh~lld~g--f~~~i~~Il~~--l~~~~q~il~SATl~~~l~~--~~~~~~i~~v~~~~~~~~~~l~~~~~~~ 609 (842)
.|+|+||||++..|| |++++..+-.. .-.....+.++||.+..+.- .....+.+++.+-. +|.--...++-+
T Consensus 143 ~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk--TP~FR~NLFYD~ 220 (641)
T KOG0352|consen 143 RYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFK--TPTFRDNLFYDN 220 (641)
T ss_pred eeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhcc--CcchhhhhhHHH
Confidence 999999999999998 89988776443 22467789999998876421 11111111221111 111111111100
Q ss_pred ----CchhhHHHHHHHHhhhhcC---------CCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHH
Q 003178 610 ----PHELHFQILHHLLKEHILG---------TPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEE 676 (842)
Q Consensus 610 ----~~~~k~~~L~~lL~~~~~~---------~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~ 676 (842)
.-.+-+..|..+....+.+ ...+-.||||.|+++|++++-.|...|++...+|+++...+|+.+.+.
T Consensus 221 ~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~ 300 (641)
T KOG0352|consen 221 HMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEK 300 (641)
T ss_pred HHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHH
Confidence 0123344455554443321 123457999999999999999999999999999999999999999999
Q ss_pred HhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccC
Q 003178 677 FRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDL 746 (842)
Q Consensus 677 F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L 746 (842)
+.++++.||+||..+++|+|-|+|++|||+++|.++.-|.|-.|||||.|++..|-++|+..+..-+..|
T Consensus 301 WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 301 WMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred HhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999887665554
No 70
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4e-33 Score=342.02 Aligned_cols=299 Identities=22% Similarity=0.275 Sum_probs=204.2
Q ss_pred hhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccc----hhHHHHHHHHHHHhhhc
Q 003178 406 QEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT----RELASQIAAEAIALLKN 481 (842)
Q Consensus 406 Q~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PT----ReLA~Qi~~~l~~l~~~ 481 (842)
..+.+..+..++.+||+|+||||||+ ++|.+. +..... ....+++..|. ++||.|+++++...++.
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~l--le~g~g------~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTT--QLPKIC--LELGRG------VKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHH--HHcCCC------CCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 34456666778888999999999999 789653 322211 01135566785 46666666666543322
Q ss_pred CCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccc-cccccccccc-hhhhh
Q 003178 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD-HLLDLGFRKD-VENIV 559 (842)
Q Consensus 482 ~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh-~lld~gf~~~-i~~Il 559 (842)
. +++-+ .+.. -.+..++|+|||||+|++++..+ ..|.++++||||||| ++++.+|... +..++
T Consensus 149 ~----VGY~v---rf~~----~~s~~t~I~v~TpG~LL~~l~~d----~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL 213 (1294)
T PRK11131 149 C----VGYKV---RFND----QVSDNTMVKLMTDGILLAEIQQD----RLLMQYDTIIIDEAHERSLNIDFILGYLKELL 213 (1294)
T ss_pred e----eceee---cCcc----ccCCCCCEEEEChHHHHHHHhcC----CccccCcEEEecCccccccccchHHHHHHHhh
Confidence 2 22111 1111 11235899999999999998765 347899999999999 5888887643 33333
Q ss_pred hcccccccceeecccCcchhhcc--ccceeeeecccccccccccccccccccCc------hhhHHHHHHHHhhhhcCCCC
Q 003178 560 DCLPRRRQSLLFSATMPKELVLK--REHTYIDTVGLGSVETPVKIKQSCLVAPH------ELHFQILHHLLKEHILGTPD 631 (842)
Q Consensus 560 ~~l~~~~q~il~SATl~~~l~~~--~~~~~i~~v~~~~~~~~~~l~~~~~~~~~------~~k~~~L~~lL~~~~~~~~~ 631 (842)
.. .++.|+|+||||++...... .....+. +... ...+.+.|..... ...+..+...+.... ....
T Consensus 214 ~~-rpdlKvILmSATid~e~fs~~F~~apvI~---V~Gr--~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~ 286 (1294)
T PRK11131 214 PR-RPDLKVIITSATIDPERFSRHFNNAPIIE---VSGR--TYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGP 286 (1294)
T ss_pred hc-CCCceEEEeeCCCCHHHHHHHcCCCCEEE---EcCc--cccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCC
Confidence 22 24689999999997652111 1111111 1111 1223344433221 122333333333322 2356
Q ss_pred ceEEEEecchhHHHHHHHHHHHHhhh---HHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecC
Q 003178 632 YKVIVFCSTGMVTSLLYLLLREMKMN---VREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGI 708 (842)
Q Consensus 632 ~kiIVF~~s~~~~~~l~~~L~~~~~~---v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~ 708 (842)
+.+||||+++.+++.++..|...++. +..+||+|++.+|.++++. .|..+||||||++++|||||+|++||++|.
T Consensus 287 GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl 364 (1294)
T PRK11131 287 GDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGT 364 (1294)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCC
Confidence 78999999999999999999987654 6789999999999999886 578999999999999999999999999863
Q ss_pred ---------------C---CChHHHHHHhhcCCCCCCCcceeEEeccch
Q 003178 709 ---------------P---PDREQYIHRLGRTGREGKEGEGVLLLAPWE 739 (842)
Q Consensus 709 ---------------P---~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E 739 (842)
| .|.++|+||+|||||. .+|.||.|+++.+
T Consensus 365 ~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d 412 (1294)
T PRK11131 365 ARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDD 412 (1294)
T ss_pred ccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHH
Confidence 3 5668999999999999 5999999999765
No 71
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=4.3e-33 Score=327.60 Aligned_cols=321 Identities=17% Similarity=0.228 Sum_probs=215.0
Q ss_pred eeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhc
Q 003178 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (842)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~ 481 (842)
++|+|.|++..+..++..|++++||+|||++|++|++.+.+.. ..++|++|+++||.|+++++..++..
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g-----------~~V~VVTpn~yLA~Rdae~m~~l~~~ 137 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTG-----------KGAMLVTTNDYLAKRDAEEMGPVYEW 137 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcC-----------CceEEeCCCHHHHHHHHHHHHHHHhh
Confidence 4555555555555555589999999999999999987665532 14899999999999999999998876
Q ss_pred CCceeEEEEeccee---eeeccccccCCCceEEecCccch-hhhcccc---CCceEEEecceeeeecccccccc-ccccc
Q 003178 482 HDGIGVLTLVGGTR---FKVDQRRLESDPCQILVATPGRL-LDHIENK---SGLSVRLMGLKMLVLDEADHLLD-LGFRK 553 (842)
Q Consensus 482 ~~~i~v~~l~Gg~~---~~~~~~~l~~~~~~IIVaTPgrL-l~~L~~~---~~~~~~L~~l~~lVlDEAh~lld-~gf~~ 553 (842)
. |+.+.+++++.. .....+... .+++|+|+||++| .+.|... ......+.++.++||||||.|+. ....+
T Consensus 138 L-GLsv~~~~~~s~~~~~~~~~rr~~-y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartp 215 (762)
T TIGR03714 138 L-GLTVSLGVVDDPDEEYDANEKRKI-YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTP 215 (762)
T ss_pred c-CCcEEEEECCCCccccCHHHHHHh-CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCC
Confidence 5 888888777632 111122222 3589999999999 5555322 11123467899999999999863 21111
Q ss_pred ---------------chhhhhhccccc--------ccceeeccc-------------Cc--ch----------h----hc
Q 003178 554 ---------------DVENIVDCLPRR--------RQSLLFSAT-------------MP--KE----------L----VL 581 (842)
Q Consensus 554 ---------------~i~~Il~~l~~~--------~q~il~SAT-------------l~--~~----------l----~~ 581 (842)
.+..++..+... .+.+.++-. +. .. + .+
T Consensus 216 liisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~ 295 (762)
T TIGR03714 216 LVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLF 295 (762)
T ss_pred eeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHH
Confidence 111111111110 011111100 00 00 0 00
Q ss_pred cccceee---------------------------------------------ee--------------------------
Q 003178 582 KREHTYI---------------------------------------------DT-------------------------- 590 (842)
Q Consensus 582 ~~~~~~i---------------------------------------------~~-------------------------- 590 (842)
..+..|+ ..
T Consensus 296 ~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~E 375 (762)
T TIGR03714 296 KRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKE 375 (762)
T ss_pred hcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHH
Confidence 0000000 00
Q ss_pred ----ccccccccccc-----c-cccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHH
Q 003178 591 ----VGLGSVETPVK-----I-KQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVRE 660 (842)
Q Consensus 591 ----v~~~~~~~~~~-----l-~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~ 660 (842)
.++.....|.+ . ....++.....|...+...+.... ..+.++||||+|+..++.++..|.+.++++..
T Consensus 376 f~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~--~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~ 453 (762)
T TIGR03714 376 FIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYH--ETGQPVLLITGSVEMSEIYSELLLREGIPHNL 453 (762)
T ss_pred HHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHh--hCCCCEEEEECcHHHHHHHHHHHHHCCCCEEE
Confidence 00000000000 0 111233445667777777776543 24669999999999999999999999999999
Q ss_pred HhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCC---------CcceeEEecCCCChHHHHHHhhcCCCCCCCcce
Q 003178 661 MYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYP---------DVTSVVQVGIPPDREQYIHRLGRTGREGKEGEG 731 (842)
Q Consensus 661 lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip---------~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~ 731 (842)
+||.+.+.++..+...|+.| .|+||||+++||+||| ++.+||+|++|....+ +||+|||||.|.+|.+
T Consensus 454 L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 454 LNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSS 530 (762)
T ss_pred ecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeE
Confidence 99999998887777777666 7999999999999999 9999999999998777 9999999999999999
Q ss_pred eEEeccchh
Q 003178 732 VLLLAPWEE 740 (842)
Q Consensus 732 i~ll~~~E~ 740 (842)
+.|++..|.
T Consensus 531 ~~~is~eD~ 539 (762)
T TIGR03714 531 QFFVSLEDD 539 (762)
T ss_pred EEEEccchh
Confidence 999998664
No 72
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=1.6e-31 Score=306.79 Aligned_cols=306 Identities=18% Similarity=0.239 Sum_probs=229.4
Q ss_pred ceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH
Q 003178 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (842)
Q Consensus 398 g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~ 477 (842)
.|. +-.+|++||-++..|..|+|.|+|.+|||+++-.++...- + .+.+++|.+|-++|.+|-++.|+.
T Consensus 295 pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq-~----------h~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 295 PFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ-K----------HMTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred CCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH-h----------hccceEecchhhhhccchHHHHHH
Confidence 443 7889999999999999999999999999998555443211 1 123799999999999999999998
Q ss_pred hhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhh
Q 003178 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557 (842)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~ 557 (842)
.++. +.+++|+..+..+ +.++|+|.+.|..+|.++... ++++++||+||+|.+.|...+-.++.
T Consensus 363 tF~D-----vgLlTGDvqinPe--------AsCLIMTTEILRsMLYrgadl---iRDvE~VIFDEVHYiND~eRGvVWEE 426 (1248)
T KOG0947|consen 363 TFGD-----VGLLTGDVQINPE--------ASCLIMTTEILRSMLYRGADL---IRDVEFVIFDEVHYINDVERGVVWEE 426 (1248)
T ss_pred hccc-----cceeecceeeCCC--------cceEeehHHHHHHHHhcccch---hhccceEEEeeeeeccccccccccee
Confidence 8754 3489999887643 789999999999999887543 56899999999999999999999999
Q ss_pred hhhcccccccceeecccCcchhhcc-------ccceeeeecccccccccccccccccccC--------------------
Q 003178 558 IVDCLPRRRQSLLFSATMPKELVLK-------REHTYIDTVGLGSVETPVKIKQSCLVAP-------------------- 610 (842)
Q Consensus 558 Il~~l~~~~q~il~SATl~~~l~~~-------~~~~~i~~v~~~~~~~~~~l~~~~~~~~-------------------- 610 (842)
++-++|++.++|++|||+|+.+.+. ....++ +.+...|+.+.+++....
T Consensus 427 ViIMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyV----iST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a 502 (1248)
T KOG0947|consen 427 VIIMLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYV----ISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDA 502 (1248)
T ss_pred eeeeccccceEEEEeccCCChHHHHHHhhhccCceEEE----EecCCCccceEEEEEeccceehhhcccchhhhhcchhh
Confidence 9999999999999999999874211 111111 111122222222211100
Q ss_pred -------------------------------------------chhhH--HHHHHHHhhhhcCCCCceEEEEecchhHHH
Q 003178 611 -------------------------------------------HELHF--QILHHLLKEHILGTPDYKVIVFCSTGMVTS 645 (842)
Q Consensus 611 -------------------------------------------~~~k~--~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~ 645 (842)
...+. .....++. ++.....-++||||-+++.|+
T Consensus 503 ~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin-~L~k~~lLP~VvFvFSkkrCd 581 (1248)
T KOG0947|consen 503 KDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLIN-HLRKKNLLPVVVFVFSKKRCD 581 (1248)
T ss_pred hhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHH-HHhhcccCceEEEEEccccHH
Confidence 00011 01222222 233334568999999999999
Q ss_pred HHHHHHHHHh---------------------------------------hhHHHHhhcCcchhhhhhhHHHhhcceEEEE
Q 003178 646 LLYLLLREMK---------------------------------------MNVREMYSRKPQLYRDRISEEFRASKRLILV 686 (842)
Q Consensus 646 ~l~~~L~~~~---------------------------------------~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLV 686 (842)
..+++|...+ ..++.+||++-+--+.-+...|..|-++||+
T Consensus 582 e~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLF 661 (1248)
T KOG0947|consen 582 EYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLF 661 (1248)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEe
Confidence 9999997421 2588999999999999999999999999999
Q ss_pred eccccccCCCCCCcceeEEec--------CCCChHHHHHHhhcCCCCCC--CcceeEEec
Q 003178 687 TSDVSARGMDYPDVTSVVQVG--------IPPDREQYIHRLGRTGREGK--EGEGVLLLA 736 (842)
Q Consensus 687 aTdv~arGlDip~V~~VI~yd--------~P~s~~~yiQRiGRaGR~G~--~G~~i~ll~ 736 (842)
||.++++|||.|.-++|+.-- .-..+-+|+|++|||||.|- .|..+++..
T Consensus 662 ATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~ 721 (1248)
T KOG0947|consen 662 ATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCK 721 (1248)
T ss_pred ehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEec
Confidence 999999999999988888311 12467899999999999994 566655554
No 73
>PRK13766 Hef nuclease; Provisional
Probab=99.98 E-value=3.6e-32 Score=333.46 Aligned_cols=322 Identities=24% Similarity=0.285 Sum_probs=229.6
Q ss_pred ceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH
Q 003178 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (842)
Q Consensus 398 g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~ 477 (842)
+...++++|.+++..++.+ ++++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.+..
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~----------~~~~vLvl~Pt~~L~~Q~~~~~~~ 80 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK----------KGGKVLILAPTKPLVEQHAEFFRK 80 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh----------CCCeEEEEeCcHHHHHHHHHHHHH
Confidence 3446899999999888877 99999999999999999888876631 122699999999999999999998
Q ss_pred hhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhh
Q 003178 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557 (842)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~ 557 (842)
++... ...+..++|+...... ..+. ..++|+|+||+.+...+... ...+.++++|||||||++........+..
T Consensus 81 ~~~~~-~~~v~~~~g~~~~~~r-~~~~-~~~~iiv~T~~~l~~~l~~~---~~~~~~~~liVvDEaH~~~~~~~~~~i~~ 154 (773)
T PRK13766 81 FLNIP-EEKIVVFTGEVSPEKR-AELW-EKAKVIVATPQVIENDLIAG---RISLEDVSLLIFDEAHRAVGNYAYVYIAE 154 (773)
T ss_pred HhCCC-CceEEEEeCCCCHHHH-HHHH-hCCCEEEECHHHHHHHHHcC---CCChhhCcEEEEECCccccccccHHHHHH
Confidence 87532 3467777777654322 1222 23689999999997665443 24567899999999999875322222222
Q ss_pred hhhcccccccceeecccCcchh--------hccc--------------------cceeeee----------------c--
Q 003178 558 IVDCLPRRRQSLLFSATMPKEL--------VLKR--------------------EHTYIDT----------------V-- 591 (842)
Q Consensus 558 Il~~l~~~~q~il~SATl~~~l--------~~~~--------------------~~~~i~~----------------v-- 591 (842)
......+..++++||||+.... .+.. ...++.. +
T Consensus 155 ~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~ 234 (773)
T PRK13766 155 RYHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKD 234 (773)
T ss_pred HHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 2323334567999999963210 0000 0000000 0
Q ss_pred ------cccccc-cc--c----------ccc---------------------------------------cc--------
Q 003178 592 ------GLGSVE-TP--V----------KIK---------------------------------------QS-------- 605 (842)
Q Consensus 592 ------~~~~~~-~~--~----------~l~---------------------------------------~~-------- 605 (842)
...... .. . .+. .+
T Consensus 235 ~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~ 314 (773)
T PRK13766 235 RLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEA 314 (773)
T ss_pred HHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhc
Confidence 000000 00 0 000 00
Q ss_pred -------------------------ccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHH
Q 003178 606 -------------------------CLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVRE 660 (842)
Q Consensus 606 -------------------------~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~ 660 (842)
..+.....|...|..+|...+....+.++||||++++.+..++..|...++.+..
T Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~ 394 (773)
T PRK13766 315 RSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVR 394 (773)
T ss_pred cccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEE
Confidence 0001112355556666666654456789999999999999999999988888888
Q ss_pred Hhhc--------CcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCccee
Q 003178 661 MYSR--------KPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGV 732 (842)
Q Consensus 661 lhg~--------~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i 732 (842)
+||. |++.+|..++..|++|+..|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| .|.++
T Consensus 395 ~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~ 473 (773)
T PRK13766 395 FVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVV 473 (773)
T ss_pred EEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEE
Confidence 8876 99999999999999999999999999999999999999999999999999999999999987 58888
Q ss_pred EEecc
Q 003178 733 LLLAP 737 (842)
Q Consensus 733 ~ll~~ 737 (842)
+++..
T Consensus 474 ~l~~~ 478 (773)
T PRK13766 474 VLIAK 478 (773)
T ss_pred EEEeC
Confidence 88874
No 74
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.98 E-value=7.6e-32 Score=295.54 Aligned_cols=322 Identities=22% Similarity=0.232 Sum_probs=232.9
Q ss_pred eeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
...++.+|......++.+ +++|+.|||-|||+++++-+...+...+ + ++|+|+||+-|+.|.++.+.+.
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~---------~-kvlfLAPTKPLV~Qh~~~~~~v 81 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG---------G-KVLFLAPTKPLVLQHAEFCRKV 81 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC---------C-eEEEecCCchHHHHHHHHHHHH
Confidence 345677888877777655 9999999999999987777766665432 3 6999999999999999999998
Q ss_pred hhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhh
Q 003178 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (842)
Q Consensus 479 ~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~I 558 (842)
++. +.-.+..++|............. .+|+|+||..+..-|..+ .+++.++.+||+||||+-....-...+..-
T Consensus 82 ~~i-p~~~i~~ltGev~p~~R~~~w~~--~kVfvaTPQvveNDl~~G---rid~~dv~~lifDEAHRAvGnyAYv~Va~~ 155 (542)
T COG1111 82 TGI-PEDEIAALTGEVRPEEREELWAK--KKVFVATPQVVENDLKAG---RIDLDDVSLLIFDEAHRAVGNYAYVFVAKE 155 (542)
T ss_pred hCC-ChhheeeecCCCChHHHHHHHhh--CCEEEeccHHHHhHHhcC---ccChHHceEEEechhhhccCcchHHHHHHH
Confidence 764 34567788998876544333333 589999999998766555 477889999999999996543222222222
Q ss_pred hhcccccccceeecccCcchh-----------------------------------------------------------
Q 003178 559 VDCLPRRRQSLLFSATMPKEL----------------------------------------------------------- 579 (842)
Q Consensus 559 l~~l~~~~q~il~SATl~~~l----------------------------------------------------------- 579 (842)
.....++..++++|||+-...
T Consensus 156 y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~ 235 (542)
T COG1111 156 YLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPR 235 (542)
T ss_pred HHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHH
Confidence 223345677999999953220
Q ss_pred -hccccceeeeecc-c--------c-----ccccccc-----------------------------ccccc---------
Q 003178 580 -VLKREHTYIDTVG-L--------G-----SVETPVK-----------------------------IKQSC--------- 606 (842)
Q Consensus 580 -~~~~~~~~i~~v~-~--------~-----~~~~~~~-----------------------------l~~~~--------- 606 (842)
....+..++.... + . ....... +.+++
T Consensus 236 Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~ 315 (542)
T COG1111 236 LKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATK 315 (542)
T ss_pred HHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcc
Confidence 0000000000000 0 0 0000000 00000
Q ss_pred --------c------------------ccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHH-
Q 003178 607 --------L------------------VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVR- 659 (842)
Q Consensus 607 --------~------------------~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~- 659 (842)
+ .....-|+..+..++.+.+....+.++|||++.++.++.+..+|.+.+..+.
T Consensus 316 ~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~ 395 (542)
T COG1111 316 GGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARV 395 (542)
T ss_pred cchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCccee
Confidence 0 0001224556667777777777788999999999999999999999877764
Q ss_pred --------HHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcce
Q 003178 660 --------EMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEG 731 (842)
Q Consensus 660 --------~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~ 731 (842)
....+|+|.++..+++.|+.|..+|||||++++.|||||.|+.||.|++-.|...++||.|||||. +.|..
T Consensus 396 rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv 474 (542)
T COG1111 396 RFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRV 474 (542)
T ss_pred EEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeE
Confidence 233579999999999999999999999999999999999999999999999999999999999995 79999
Q ss_pred eEEeccc
Q 003178 732 VLLLAPW 738 (842)
Q Consensus 732 i~ll~~~ 738 (842)
++|++..
T Consensus 475 ~vLvt~g 481 (542)
T COG1111 475 VVLVTEG 481 (542)
T ss_pred EEEEecC
Confidence 9999875
No 75
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.97 E-value=5.6e-32 Score=316.29 Aligned_cols=319 Identities=18% Similarity=0.180 Sum_probs=225.5
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.|+++|..+.+.++.|+ |+.++||+|||++|++|++...+... .++|++||++||.|.++++..++.
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~-----------~V~VvTpt~~LA~qdae~~~~l~~ 122 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGK-----------GVHVVTVNDYLAQRDAEWMGQVYR 122 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCC-----------CEEEEcCCHHHHHHHHHHHHHHhc
Confidence 48889988888887776 99999999999999999964444321 489999999999999999999987
Q ss_pred cCCceeEEEEecceeeeeccccccCCCceEEecCccch-hhhccccCCc---eEEEecceeeeecccccccc-cccccc-
Q 003178 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGL---SVRLMGLKMLVLDEADHLLD-LGFRKD- 554 (842)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrL-l~~L~~~~~~---~~~L~~l~~lVlDEAh~lld-~gf~~~- 554 (842)
.. ++.+.+++|+.+.......+ .++|+|+||++| .++|...... ...+.++.++||||||.++- ....+.
T Consensus 123 ~L-GLsv~~i~g~~~~~~r~~~y---~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLi 198 (745)
T TIGR00963 123 FL-GLSVGLILSGMSPEERREAY---ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLI 198 (745)
T ss_pred cC-CCeEEEEeCCCCHHHHHHhc---CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHh
Confidence 75 89999999987754332222 379999999999 8888655211 23567899999999999763 110000
Q ss_pred --------------hhhhhhcccc---------c----------------------------------------------
Q 003178 555 --------------VENIVDCLPR---------R---------------------------------------------- 565 (842)
Q Consensus 555 --------------i~~Il~~l~~---------~---------------------------------------------- 565 (842)
...|...+.. .
T Consensus 199 isg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~ 278 (745)
T TIGR00963 199 ISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEK 278 (745)
T ss_pred hcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 0001100000 0
Q ss_pred --------------------------------------------------------------ccceeecccCcchhhccc
Q 003178 566 --------------------------------------------------------------RQSLLFSATMPKELVLKR 583 (842)
Q Consensus 566 --------------------------------------------------------------~q~il~SATl~~~l~~~~ 583 (842)
..+.+||.|...+.....
T Consensus 279 d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~ 358 (745)
T TIGR00963 279 DVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFE 358 (745)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHH
Confidence 001122222211100000
Q ss_pred cceeeeeccccccccccccc-ccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHh
Q 003178 584 EHTYIDTVGLGSVETPVKIK-QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMY 662 (842)
Q Consensus 584 ~~~~i~~v~~~~~~~~~~l~-~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lh 662 (842)
...-++.+.++......... ...++.....|...+...+.... ..+.++||||+|+..++.++..|.+.++++..+|
T Consensus 359 ~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~--~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Ln 436 (745)
T TIGR00963 359 KIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERH--AKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLN 436 (745)
T ss_pred HHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEee
Confidence 00000000001000001111 11222334556666666554433 3467999999999999999999999999999999
Q ss_pred hcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCC-------cceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEe
Q 003178 663 SRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPD-------VTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLL 735 (842)
Q Consensus 663 g~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~-------V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll 735 (842)
+. +.+|+..+..|+.+...|+|||++|+||+||+. ..+||+++.|.+...|.|++|||||.|.+|.+..|+
T Consensus 437 a~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~l 514 (745)
T TIGR00963 437 AK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFL 514 (745)
T ss_pred CC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEE
Confidence 98 889999999999999999999999999999998 559999999999999999999999999999999999
Q ss_pred ccchh
Q 003178 736 APWEE 740 (842)
Q Consensus 736 ~~~E~ 740 (842)
+..|.
T Consensus 515 s~eD~ 519 (745)
T TIGR00963 515 SLEDN 519 (745)
T ss_pred eccHH
Confidence 98765
No 76
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=2.9e-32 Score=304.42 Aligned_cols=295 Identities=17% Similarity=0.186 Sum_probs=195.7
Q ss_pred hhhhhhhhhhcCcc--eEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcC
Q 003178 405 VQEATLSACLEGKD--AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482 (842)
Q Consensus 405 iQ~~aI~~il~g~d--vii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~ 482 (842)
+|.++++.+.++.+ ++++||||||||++|++|++.. . .+++|++|+++|+.|+++.+..++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----~----------~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----E----------NDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----C----------CCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 59999999999874 7889999999999999998731 1 147999999999999999999987532
Q ss_pred ---CceeEEEEecceeee--ecc-----------------ccccCCCceEEecCccchhhhcccc---CC--ceEEEecc
Q 003178 483 ---DGIGVLTLVGGTRFK--VDQ-----------------RRLESDPCQILVATPGRLLDHIENK---SG--LSVRLMGL 535 (842)
Q Consensus 483 ---~~i~v~~l~Gg~~~~--~~~-----------------~~l~~~~~~IIVaTPgrLl~~L~~~---~~--~~~~L~~l 535 (842)
.+..+..+.|.+... ... .......+.|+++||+.|..++... .. ....+.++
T Consensus 67 ~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 67 KPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 245555566642111 000 0011235789999999987655321 00 11125689
Q ss_pred eeeeeccccccccccc-----ccchhhhhhcccccccceeecccCcchhhcccc------ceeeeeccc--cc-------
Q 003178 536 KMLVLDEADHLLDLGF-----RKDVENIVDCLPRRRQSLLFSATMPKELVLKRE------HTYIDTVGL--GS------- 595 (842)
Q Consensus 536 ~~lVlDEAh~lld~gf-----~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~------~~~i~~v~~--~~------- 595 (842)
++|||||+|.+..++. ......++.......+++++|||+++.+..... .......+. ..
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~ 226 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELE 226 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhh
Confidence 9999999999875431 112333444444457999999999887321110 001000000 00
Q ss_pred --cc------ccccccccccccCchhhHHHHH---HHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHh--hhHHHHh
Q 003178 596 --VE------TPVKIKQSCLVAPHELHFQILH---HLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK--MNVREMY 662 (842)
Q Consensus 596 --~~------~~~~l~~~~~~~~~~~k~~~L~---~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~--~~v~~lh 662 (842)
.. ....+.+.+.. ....+...+. ..+.+.+...+++++||||+|+..++.++..|+..+ +.+..+|
T Consensus 227 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~ 305 (357)
T TIGR03158 227 ADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRIT 305 (357)
T ss_pred ccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeee
Confidence 00 00123332222 2223333333 333333323356799999999999999999999864 5678899
Q ss_pred hcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCC
Q 003178 663 SRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTG 723 (842)
Q Consensus 663 g~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaG 723 (842)
|.+++.+|.++ ++..|||||++++||||+|.+ +|| ++ |.+.+.|+||+||||
T Consensus 306 g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 306 GFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred cCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99999988754 478899999999999999987 666 55 899999999999997
No 77
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=9.1e-32 Score=331.32 Aligned_cols=300 Identities=19% Similarity=0.235 Sum_probs=212.3
Q ss_pred hhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeE
Q 003178 408 ATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGV 487 (842)
Q Consensus 408 ~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v 487 (842)
+.+..+.+++.+||+|+||||||+ ++|.+ ++..... ...+++++.|.|..|..++..+.+.++.. +
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTT--qlPq~--lle~~~~------~~~~I~~tQPRRlAA~svA~RvA~elg~~----l 139 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTT--QLPKI--CLELGRG------SHGLIGHTQPRRLAARTVAQRIAEELGTP----L 139 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHH--HHHHH--HHHcCCC------CCceEecCCccHHHHHHHHHHHHHHhCCC----c
Confidence 455666677888999999999999 78876 3332211 11257788999999999988887776443 3
Q ss_pred EEEecc-eeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccc-cccccccccc-hhhhhhcccc
Q 003178 488 LTLVGG-TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD-HLLDLGFRKD-VENIVDCLPR 564 (842)
Q Consensus 488 ~~l~Gg-~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh-~lld~gf~~~-i~~Il~~l~~ 564 (842)
...+|. ..+... .+..+.|+|+|+|+|++++..+ ..|.++++||||||| ++++.+|.-. +..++... +
T Consensus 140 G~~VGY~vR~~~~----~s~~T~I~~~TdGiLLr~l~~d----~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-p 210 (1283)
T TIGR01967 140 GEKVGYKVRFHDQ----VSSNTLVKLMTDGILLAETQQD----RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-P 210 (1283)
T ss_pred ceEEeeEEcCCcc----cCCCceeeeccccHHHHHhhhC----cccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-C
Confidence 333332 122111 1345799999999999998765 347899999999999 5888877654 45554433 4
Q ss_pred cccceeecccCcchhhcc--ccceeeeecccccccccccccccccccCc------hhhHHHHHHHHhhhhcCCCCceEEE
Q 003178 565 RRQSLLFSATMPKELVLK--REHTYIDTVGLGSVETPVKIKQSCLVAPH------ELHFQILHHLLKEHILGTPDYKVIV 636 (842)
Q Consensus 565 ~~q~il~SATl~~~l~~~--~~~~~i~~v~~~~~~~~~~l~~~~~~~~~------~~k~~~L~~lL~~~~~~~~~~kiIV 636 (842)
+.|+|+||||+....... .....+. +.... ..+...|..... ..+...+...+...+. ...+.+||
T Consensus 211 dLKlIlmSATld~~~fa~~F~~apvI~---V~Gr~--~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILV 284 (1283)
T TIGR01967 211 DLKIIITSATIDPERFSRHFNNAPIIE---VSGRT--YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILI 284 (1283)
T ss_pred CCeEEEEeCCcCHHHHHHHhcCCCEEE---ECCCc--ccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEE
Confidence 789999999997642111 1111111 11111 122223322211 1233444455544432 24579999
Q ss_pred EecchhHHHHHHHHHHHHh---hhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCC----
Q 003178 637 FCSTGMVTSLLYLLLREMK---MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP---- 709 (842)
Q Consensus 637 F~~s~~~~~~l~~~L~~~~---~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P---- 709 (842)
|++++.+++.++..|++.+ +.+..+||.|++.+|.+++..+ +..+||||||++++|||||+|++||++|.+
T Consensus 285 FLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~ 362 (1283)
T TIGR01967 285 FLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISR 362 (1283)
T ss_pred eCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccc
Confidence 9999999999999998764 4588999999999999997654 347999999999999999999999999843
Q ss_pred --------------CChHHHHHHhhcCCCCCCCcceeEEeccch
Q 003178 710 --------------PDREQYIHRLGRTGREGKEGEGVLLLAPWE 739 (842)
Q Consensus 710 --------------~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E 739 (842)
.|.++|.||+|||||.| +|.||.|++..+
T Consensus 363 yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~ 405 (1283)
T TIGR01967 363 YSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEED 405 (1283)
T ss_pred cccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHH
Confidence 46789999999999998 999999998754
No 78
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.1e-31 Score=311.60 Aligned_cols=341 Identities=19% Similarity=0.247 Sum_probs=256.2
Q ss_pred ccceeeeeehhhhhhhhhhc-CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHH
Q 003178 396 AAGYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (842)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~-g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~ 474 (842)
-++|..++.+|..++|.+.. +.|+|||||||||||..|+|.||+.+.+.. .........++++||+|+++||..+++.
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~-~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHE-EQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhc-cccccccCCceEEEEechHHHHHHHHHH
Confidence 35788899999999999876 669999999999999999999998887632 2233345678999999999999999999
Q ss_pred HHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCC-ceEEEecceeeeeccccccccccccc
Q 003178 475 AIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG-LSVRLMGLKMLVLDEADHLLDLGFRK 553 (842)
Q Consensus 475 l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~-~~~~L~~l~~lVlDEAh~lld~gf~~ 553 (842)
+.+-+... |+.|.-++|++...... .. .++|||+||+.. |.+.+.+. ....+..+++|||||+|.|-+. .++
T Consensus 184 ~~kkl~~~-gi~v~ELTGD~ql~~te--i~--~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGp 256 (1230)
T KOG0952|consen 184 FSKKLAPL-GISVRELTGDTQLTKTE--IA--DTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGP 256 (1230)
T ss_pred Hhhhcccc-cceEEEecCcchhhHHH--HH--hcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCc-ccc
Confidence 88887655 89999999998875443 22 389999999995 55544322 1233567999999999988765 678
Q ss_pred chhhhhhccc-------ccccceeecccCcchhhcc---ccceeeeecccccccccccccccccccCch---hhH----H
Q 003178 554 DVENIVDCLP-------RRRQSLLFSATMPKELVLK---REHTYIDTVGLGSVETPVKIKQSCLVAPHE---LHF----Q 616 (842)
Q Consensus 554 ~i~~Il~~l~-------~~~q~il~SATl~~~l~~~---~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~---~k~----~ 616 (842)
.++.|+..+. ...++|++|||+|+-..+. .-+.+.....+...-.|..+.+.++-.+.. ... .
T Consensus 257 vlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~ 336 (1230)
T KOG0952|consen 257 VLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDE 336 (1230)
T ss_pred hHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHH
Confidence 8888876554 3468999999999974321 122334444455666777777777655443 111 1
Q ss_pred HHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHh-----------------------hhHHHHhhcCcchhhhhh
Q 003178 617 ILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK-----------------------MNVREMYSRKPQLYRDRI 673 (842)
Q Consensus 617 ~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~-----------------------~~v~~lhg~~~~~~R~~v 673 (842)
.+..-+.+.+ ..+.+++|||.++..+...++.|.+.. ..+..+|++|...+|..+
T Consensus 337 ~~~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~ 414 (1230)
T KOG0952|consen 337 VCYDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLV 414 (1230)
T ss_pred HHHHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHH
Confidence 1222222222 246799999999999999999997642 357889999999999999
Q ss_pred hHHHhhcceEEEEeccccccCCCCCCcceeE----EecCC------CChHHHHHHhhcCCCCC--CCcceeEEeccchh-
Q 003178 674 SEEFRASKRLILVTSDVSARGMDYPDVTSVV----QVGIP------PDREQYIHRLGRTGREG--KEGEGVLLLAPWEE- 740 (842)
Q Consensus 674 ~~~F~~g~~~VLVaTdv~arGlDip~V~~VI----~yd~P------~s~~~yiQRiGRaGR~G--~~G~~i~ll~~~E~- 740 (842)
...|..|.++||+||.+++.|+|+|+--+|| .||.. .+..+.+|..|||||.. ..|.++++-+..-.
T Consensus 415 E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 415 EKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred HHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHH
Confidence 9999999999999999999999999987777 35543 25778899999999965 67888877665332
Q ss_pred hhhccC
Q 003178 741 YFLDDL 746 (842)
Q Consensus 741 ~~l~~L 746 (842)
+|+..|
T Consensus 495 ~Y~sLl 500 (1230)
T KOG0952|consen 495 HYESLL 500 (1230)
T ss_pred HHHHHH
Confidence 444444
No 79
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=4.6e-30 Score=269.49 Aligned_cols=337 Identities=19% Similarity=0.276 Sum_probs=244.6
Q ss_pred cccCCCchhHhhhcc-cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEE
Q 003178 382 DECGISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLI 460 (842)
Q Consensus 382 ~~l~l~~~l~~~L~~-~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LI 460 (842)
++++.+....+.|++ +..++++|.|..+|++.+.|.++++..|||.||++||++|++- ..+ .+||
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~---adg-----------~alv 139 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC---ADG-----------FALV 139 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh---cCC-----------ceEe
Confidence 467778888888874 5778999999999999999999999999999999999999972 221 5899
Q ss_pred eccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccc--cCCCceEEecCccchhhh--ccccCCceEEEe
Q 003178 461 LCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRL--ESDPCQILVATPGRLLDH--IENKSGLSVRLM 533 (842)
Q Consensus 461 L~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l--~~~~~~IIVaTPgrLl~~--L~~~~~~~~~L~ 533 (842)
++|...|+..+.-+++.+ |+....+...++.... ...+ +.....+|+.||+.+... +.+.-.......
T Consensus 140 i~plislmedqil~lkql-----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~ 214 (695)
T KOG0353|consen 140 ICPLISLMEDQILQLKQL-----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAG 214 (695)
T ss_pred echhHHHHHHHHHHHHHh-----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcc
Confidence 999999998887777776 4444444333322110 0111 122468999999988531 111101112334
Q ss_pred cceeeeecccccccccc--cccchhh--hhhcccccccceeecccCcchhhcccccee-ee-eccccccccccccccccc
Q 003178 534 GLKMLVLDEADHLLDLG--FRKDVEN--IVDCLPRRRQSLLFSATMPKELVLKREHTY-ID-TVGLGSVETPVKIKQSCL 607 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~g--f~~~i~~--Il~~l~~~~q~il~SATl~~~l~~~~~~~~-i~-~v~~~~~~~~~~l~~~~~ 607 (842)
.+.+|.+||+|+...|| |++++.. |+..--+...++.++||.++.+.......+ +. ...+...-...++...+.
T Consensus 215 ~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~ 294 (695)
T KOG0353|consen 215 FFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVR 294 (695)
T ss_pred eeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEee
Confidence 57899999999999998 8888764 355555678899999998877422111000 00 000000011111211111
Q ss_pred ccC--chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEE
Q 003178 608 VAP--HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLIL 685 (842)
Q Consensus 608 ~~~--~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VL 685 (842)
..| .++-.+-+..+++..+ .+...||||-+++.++.++..|+..|+....+|+.|.+.+|..+-+.+..|++.|+
T Consensus 295 qkp~n~dd~~edi~k~i~~~f---~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvi 371 (695)
T KOG0353|consen 295 QKPGNEDDCIEDIAKLIKGDF---AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVI 371 (695)
T ss_pred eCCCChHHHHHHHHHHhcccc---CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEE
Confidence 111 2333344444444332 44567999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccCCCCCCcceeEEecCCCChHHHHH-------------------------------------------HhhcC
Q 003178 686 VTSDVSARGMDYPDVTSVVQVGIPPDREQYIH-------------------------------------------RLGRT 722 (842)
Q Consensus 686 VaTdv~arGlDip~V~~VI~yd~P~s~~~yiQ-------------------------------------------RiGRa 722 (842)
|||-++++|||-|+|++|||..+|.+++.|.| ..|||
T Consensus 372 vatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgra 451 (695)
T KOG0353|consen 372 VATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRA 451 (695)
T ss_pred EEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhcccc
Confidence 99999999999999999999999999999999 78999
Q ss_pred CCCCCCcceeEEeccchh
Q 003178 723 GREGKEGEGVLLLAPWEE 740 (842)
Q Consensus 723 GR~G~~G~~i~ll~~~E~ 740 (842)
||.+.+..|+++|.-.+.
T Consensus 452 grd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 452 GRDDMKADCILYYGFADI 469 (695)
T ss_pred ccCCCcccEEEEechHHH
Confidence 999999999999875553
No 80
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.96 E-value=3.1e-29 Score=289.63 Aligned_cols=325 Identities=22% Similarity=0.280 Sum_probs=226.1
Q ss_pred cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
.....++.+|.+.+..+| |+++||++|||+|||++++.-+++++.... ..++++++||+-|+.|+...+.
T Consensus 58 p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p---------~~KiVF~aP~~pLv~QQ~a~~~ 127 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP---------KGKVVFLAPTRPLVNQQIACFS 127 (746)
T ss_pred cCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC---------cceEEEeeCCchHHHHHHHHHh
Confidence 345568999999999989 999999999999999998887777765432 2479999999999999997666
Q ss_pred HhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccc-cccch
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-FRKDV 555 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~g-f~~~i 555 (842)
.++.. ..+....||.........+. ...+|+|+||..|..-|...... .|+.+.++||||||+-.... +...+
T Consensus 128 ~~~~~---~~~T~~l~~~~~~~~r~~i~-~s~~vff~TpQil~ndL~~~~~~--~ls~fs~iv~DE~Hra~kn~~Y~~Vm 201 (746)
T KOG0354|consen 128 IYLIP---YSVTGQLGDTVPRSNRGEIV-ASKRVFFRTPQILENDLKSGLHD--ELSDFSLIVFDECHRTSKNHPYNNIM 201 (746)
T ss_pred hccCc---ccceeeccCccCCCchhhhh-cccceEEeChHhhhhhccccccc--ccceEEEEEEcccccccccccHHHHH
Confidence 66542 44555555543332222222 23799999999999888765322 26889999999999976432 33333
Q ss_pred hhhhhcccccccceeecccCcchhh--------c------------------cccceeeee-cc----------------
Q 003178 556 ENIVDCLPRRRQSLLFSATMPKELV--------L------------------KREHTYIDT-VG---------------- 592 (842)
Q Consensus 556 ~~Il~~l~~~~q~il~SATl~~~l~--------~------------------~~~~~~i~~-v~---------------- 592 (842)
...+..-....|+|++|||+..... + ......+.. +.
T Consensus 202 r~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p 281 (746)
T KOG0354|consen 202 REYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEP 281 (746)
T ss_pred HHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHH
Confidence 3444433334499999999754300 0 000000000 00
Q ss_pred ---------c-----cc-----------------cccccc--------------------cc------------------
Q 003178 593 ---------L-----GS-----------------VETPVK--------------------IK------------------ 603 (842)
Q Consensus 593 ---------~-----~~-----------------~~~~~~--------------------l~------------------ 603 (842)
+ .. ...... +.
T Consensus 282 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~ 361 (746)
T KOG0354|consen 282 LLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALK 361 (746)
T ss_pred HHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchh
Confidence 0 00 000000 00
Q ss_pred c----------------------cccccC--chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH---hh
Q 003178 604 Q----------------------SCLVAP--HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM---KM 656 (842)
Q Consensus 604 ~----------------------~~~~~~--~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~---~~ 656 (842)
. .+...+ ...|+..+..++.++....+..++|||+.++..|..+..+|.+. ++
T Consensus 362 k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~i 441 (746)
T KOG0354|consen 362 KYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGI 441 (746)
T ss_pred HHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccc
Confidence 0 000000 12344556666666666677889999999999999999999842 22
Q ss_pred hHHHH--------hhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCC
Q 003178 657 NVREM--------YSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKE 728 (842)
Q Consensus 657 ~v~~l--------hg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~ 728 (842)
....+ ..+|+|.++..+++.|+.|+.+|||||++++.||||+.|+.||-||.-.++...+||.|| ||+. .
T Consensus 442 r~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-n 519 (746)
T KOG0354|consen 442 KAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-N 519 (746)
T ss_pred ccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-C
Confidence 22222 257999999999999999999999999999999999999999999999999999999999 9965 7
Q ss_pred cceeEEeccch
Q 003178 729 GEGVLLLAPWE 739 (842)
Q Consensus 729 G~~i~ll~~~E 739 (842)
|.++++++..+
T Consensus 520 s~~vll~t~~~ 530 (746)
T KOG0354|consen 520 SKCVLLTTGSE 530 (746)
T ss_pred CeEEEEEcchh
Confidence 99999988543
No 81
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=1.2e-29 Score=303.77 Aligned_cols=316 Identities=18% Similarity=0.205 Sum_probs=212.7
Q ss_pred eeeehhhhhhhhhhcC---cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH
Q 003178 401 QMTRVQEATLSACLEG---KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g---~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~ 477 (842)
.+|+.|.++++.++++ +++++.|+||||||.+|+.++.+.+... .++|||+||++|+.|+++.+.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-----------~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-----------KQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC-----------CeEEEEeCcHHHHHHHHHHHHH
Confidence 5899999999999874 7899999999999999988776655432 2699999999999999999988
Q ss_pred hhhcCCceeEEEEecceeeeecc---ccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccc--
Q 003178 478 LLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR-- 552 (842)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~-- 552 (842)
.+ +..+..++|+.+..... ..+..+.++|+|+|++.+. ..+.++.+|||||+|.....+..
T Consensus 213 ~f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~----------~p~~~l~liVvDEeh~~s~~~~~~p 278 (679)
T PRK05580 213 RF----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF----------LPFKNLGLIIVDEEHDSSYKQQEGP 278 (679)
T ss_pred Hh----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----------ccccCCCEEEEECCCccccccCcCC
Confidence 65 45677888876543222 2334456899999998763 23568999999999986543211
Q ss_pred -cchhh--hhhcccccccceeecccCcchhhccccceeeeecccccccccccccccccccCc--------hhhHHHHHHH
Q 003178 553 -KDVEN--IVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKIKQSCLVAPH--------ELHFQILHHL 621 (842)
Q Consensus 553 -~~i~~--Il~~l~~~~q~il~SATl~~~l~~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~--------~~k~~~L~~l 621 (842)
-.... +......+.+++++|||++.+............+...............++... ...-..+...
T Consensus 279 ~y~~r~va~~ra~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~ 358 (679)
T PRK05580 279 RYHARDLAVVRAKLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEA 358 (679)
T ss_pred CCcHHHHHHHHhhccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHH
Confidence 11122 223334678999999998765322111111111111111000000010000000 0011234444
Q ss_pred HhhhhcCCCCceEEEEecch------------------------------------------------------------
Q 003178 622 LKEHILGTPDYKVIVFCSTG------------------------------------------------------------ 641 (842)
Q Consensus 622 L~~~~~~~~~~kiIVF~~s~------------------------------------------------------------ 641 (842)
+.+.+ ..+.++|||+|.+
T Consensus 359 i~~~l--~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g 436 (679)
T PRK05580 359 IKQRL--ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVG 436 (679)
T ss_pred HHHHH--HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEee
Confidence 44443 2345788887641
Q ss_pred hHHHHHHHHHHHH--hhhHHHHhhcCcc--hhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecC--CCC----
Q 003178 642 MVTSLLYLLLREM--KMNVREMYSRKPQ--LYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGI--PPD---- 711 (842)
Q Consensus 642 ~~~~~l~~~L~~~--~~~v~~lhg~~~~--~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~--P~s---- 711 (842)
.-++.+.+.|++. +.++..+|+++.+ .++.++++.|++|+.+|||+|+++++|+|+|+|++|+.+|. +.+
T Consensus 437 ~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdf 516 (679)
T PRK05580 437 PGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDF 516 (679)
T ss_pred ccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCcc
Confidence 1355667777766 6788899999875 56889999999999999999999999999999999965544 332
Q ss_pred ------hHHHHHHhhcCCCCCCCcceeEEeccchhhhh
Q 003178 712 ------REQYIHRLGRTGREGKEGEGVLLLAPWEEYFL 743 (842)
Q Consensus 712 ------~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l 743 (842)
...|+|++||+||.++.|.+++.....+...+
T Consensus 517 ra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~ 554 (679)
T PRK05580 517 RASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVI 554 (679)
T ss_pred chHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHH
Confidence 36789999999999999999987655444433
No 82
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=2.6e-29 Score=295.75 Aligned_cols=305 Identities=19% Similarity=0.227 Sum_probs=205.1
Q ss_pred eeeeehhhhhhhhhhc-C--cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 400 IQMTRVQEATLSACLE-G--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~-g--~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
..++|+|.+++..++. | +..++++|||+|||++.+. ++..+. -++|||||+.+|+.||.+++.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~-aa~~l~-------------k~tLILvps~~Lv~QW~~ef~ 319 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVT-AACTVK-------------KSCLVLCTSAVSVEQWKQQFK 319 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHH-HHHHhC-------------CCEEEEeCcHHHHHHHHHHHH
Confidence 3589999999998874 3 3789999999999998443 333321 148999999999999999999
Q ss_pred HhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCc-----eEEEecceeeeeccccccccccc
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL-----SVRLMGLKMLVLDEADHLLDLGF 551 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~-----~~~L~~l~~lVlDEAh~lld~gf 551 (842)
+++... ...+..++|+.... . .....|+|+|+..+.......... .+.-..+.+||+||||++....|
T Consensus 320 ~~~~l~-~~~I~~~tg~~k~~-----~-~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~f 392 (732)
T TIGR00603 320 MWSTID-DSQICRFTSDAKER-----F-HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMF 392 (732)
T ss_pred HhcCCC-CceEEEEecCcccc-----c-ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHH
Confidence 986432 34455566653221 1 122689999998775322111000 01123578999999999865444
Q ss_pred ccchhhhhhcccccccceeecccCcchhhcccc-ceeeee----------ccccccc--------cc--cccccc-----
Q 003178 552 RKDVENIVDCLPRRRQSLLFSATMPKELVLKRE-HTYIDT----------VGLGSVE--------TP--VKIKQS----- 605 (842)
Q Consensus 552 ~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~-~~~i~~----------v~~~~~~--------~~--~~l~~~----- 605 (842)
+ .++..+. ....+++|||+..+-..... ..++.. +..+... .+ ......
T Consensus 393 r----~il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~ 467 (732)
T TIGR00603 393 R----RVLTIVQ-AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLREN 467 (732)
T ss_pred H----HHHHhcC-cCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhc
Confidence 3 3444443 23469999998643110000 000000 0000000 00 000000
Q ss_pred -----ccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhc
Q 003178 606 -----CLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRAS 680 (842)
Q Consensus 606 -----~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g 680 (842)
.+......|+..+..++..+. ..+.++||||.+...+..++..|. +..+||.+++.+|.++++.|+.|
T Consensus 468 ~~~k~~l~~~np~K~~~~~~Li~~he--~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~ 540 (732)
T TIGR00603 468 SRKRMLLYVMNPNKFRACQFLIRFHE--QRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHN 540 (732)
T ss_pred chhhhHHhhhChHHHHHHHHHHHHHh--hcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhC
Confidence 111123345556666665542 356799999999998888887763 56689999999999999999975
Q ss_pred -ceEEEEeccccccCCCCCCcceeEEecCC-CChHHHHHHhhcCCCCCCCcce-------eEEecc
Q 003178 681 -KRLILVTSDVSARGMDYPDVTSVVQVGIP-PDREQYIHRLGRTGREGKEGEG-------VLLLAP 737 (842)
Q Consensus 681 -~~~VLVaTdv~arGlDip~V~~VI~yd~P-~s~~~yiQRiGRaGR~G~~G~~-------i~ll~~ 737 (842)
.+++||+|+++.+|||+|++++||+++.| .+..+|+||+||++|.+..|.+ |.|+++
T Consensus 541 ~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~ 606 (732)
T TIGR00603 541 PKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSK 606 (732)
T ss_pred CCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecC
Confidence 78999999999999999999999999998 5999999999999999877765 777776
No 83
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.3e-28 Score=288.70 Aligned_cols=360 Identities=22% Similarity=0.292 Sum_probs=262.7
Q ss_pred CCCchhHhhhcccceeeeeehhhhhhhhhhcCc-ceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEecc
Q 003178 385 GISPLTIKALTAAGYIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463 (842)
Q Consensus 385 ~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~-dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~P 463 (842)
.++.+-..++ .|...+.++|.....+.+.+. ++++|||||+|||..+++-+|+.+-.+......-.-.+.++.|++|
T Consensus 295 elP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 3444445555 367779999999999988875 8999999999999999999999887655433333345678999999
Q ss_pred chhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccc
Q 003178 464 TRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEA 543 (842)
Q Consensus 464 TReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEA 543 (842)
.++|++.+...+.+.+..+ |+.|.-++|+......+. ..++||||||+.. |.+.++.+-....+-++++|+||.
T Consensus 373 mKaLvqE~VgsfSkRla~~-GI~V~ElTgD~~l~~~qi----eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEI 446 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPL-GITVLELTGDSQLGKEQI----EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEI 446 (1674)
T ss_pred HHHHHHHHHHHHHhhcccc-CcEEEEecccccchhhhh----hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhh
Confidence 9999999999999888776 899999999877544332 2379999999994 666555332233345789999999
Q ss_pred ccccccccccchhhhhhcccc-------cccceeecccCcchhhccc--cceeeeecccccccccccccccccccCch--
Q 003178 544 DHLLDLGFRKDVENIVDCLPR-------RRQSLLFSATMPKELVLKR--EHTYIDTVGLGSVETPVKIKQSCLVAPHE-- 612 (842)
Q Consensus 544 h~lld~gf~~~i~~Il~~l~~-------~~q~il~SATl~~~l~~~~--~~~~i~~v~~~~~~~~~~l~~~~~~~~~~-- 612 (842)
|.+-|. .++.++.|+..... ..+.+++|||+|+-..... ....-+.........|..+.|.++-+...
T Consensus 447 HLLhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 447 HLLHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKP 525 (1674)
T ss_pred hhcccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCc
Confidence 987664 57777777665432 5789999999999732211 11112223344556778888887765443
Q ss_pred -hhHHHHHHHHh-hhhcCCCCceEEEEecchhHHHHHHHHHHHH------------------------------------
Q 003178 613 -LHFQILHHLLK-EHILGTPDYKVIVFCSTGMVTSLLYLLLREM------------------------------------ 654 (842)
Q Consensus 613 -~k~~~L~~lL~-~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~------------------------------------ 654 (842)
.+++.+....- +.+......++|||+.+++++...+..++..
T Consensus 526 ~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdL 605 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDL 605 (1674)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHH
Confidence 33443333322 2222234479999999999999888888721
Q ss_pred -hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeE----EecC------CCChHHHHHHhhcCC
Q 003178 655 -KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVV----QVGI------PPDREQYIHRLGRTG 723 (842)
Q Consensus 655 -~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI----~yd~------P~s~~~yiQRiGRaG 723 (842)
.+.++.+|++|+..+|..+...|+.|.++|||+|-++++|+|+|+-+++| .||+ +.++.+..||.||||
T Consensus 606 LpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgrag 685 (1674)
T KOG0951|consen 606 LPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAG 685 (1674)
T ss_pred hhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcC
Confidence 24688999999999999999999999999999999999999999999888 4654 458999999999999
Q ss_pred CCCC--CcceeEEeccchh-hhhccC-CCCCCCC
Q 003178 724 REGK--EGEGVLLLAPWEE-YFLDDL-KDLPLDK 753 (842)
Q Consensus 724 R~G~--~G~~i~ll~~~E~-~~l~~L-~~~~l~~ 753 (842)
|.+- .|.++++-...|. +++..+ +++|++.
T Consensus 686 rp~~D~~gegiiit~~se~qyyls~mn~qLpies 719 (1674)
T KOG0951|consen 686 RPQYDTCGEGIIITDHSELQYYLSLMNQQLPIES 719 (1674)
T ss_pred CCccCcCCceeeccCchHhhhhHHhhhhcCCChH
Confidence 9873 5666665555554 444333 3455543
No 84
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=5.7e-28 Score=273.12 Aligned_cols=310 Identities=21% Similarity=0.248 Sum_probs=216.2
Q ss_pred hhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcC-Cce
Q 003178 407 EATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH-DGI 485 (842)
Q Consensus 407 ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~-~~i 485 (842)
++++.+|..+.-|||||.||||||+ ++|.+ |++.+........+++ +-|..|.|..|.-++.++...++.+ ..+
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT--QvPQF--LYEAGf~s~~~~~~gm-IGITqPRRVAaiamAkRVa~EL~~~~~eV 336 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT--QVPQF--LYEAGFASEQSSSPGM-IGITQPRRVAAIAMAKRVAFELGVLGSEV 336 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc--cchHH--HHHcccCCccCCCCCe-eeecCchHHHHHHHHHHHHHHhccCccce
Confidence 3467778888889999999999999 88987 8888776655545554 5689999999999888776555442 234
Q ss_pred eEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccc-----cccccchhhhhh
Q 003178 486 GVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-----LGFRKDVENIVD 560 (842)
Q Consensus 486 ~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld-----~gf~~~i~~Il~ 560 (842)
..++.+.++. ...+.|.++|.|.|++.+.++ +.|.++++|||||||.-.- .|....+..+..
T Consensus 337 sYqIRfd~ti---------~e~T~IkFMTDGVLLrEi~~D----flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~ 403 (1172)
T KOG0926|consen 337 SYQIRFDGTI---------GEDTSIKFMTDGVLLREIEND----FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQ 403 (1172)
T ss_pred eEEEEecccc---------CCCceeEEecchHHHHHHHHh----HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHH
Confidence 4444444433 223799999999999999887 6688999999999998431 122222222222
Q ss_pred cccc------cccceeecccCcchhhccccceee---eecccccccccccccccccccCchhhHHHHHHHHhhhhcCCCC
Q 003178 561 CLPR------RRQSLLFSATMPKELVLKREHTYI---DTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPD 631 (842)
Q Consensus 561 ~l~~------~~q~il~SATl~~~l~~~~~~~~i---~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~ 631 (842)
...+ ....|+||||+.-.-.......|- ..+.+...+-|+.+ ++-.....+...-...-...+....|.
T Consensus 404 k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsI--HF~krT~~DYi~eAfrKtc~IH~kLP~ 481 (1172)
T KOG0926|consen 404 KYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSI--HFNKRTPDDYIAEAFRKTCKIHKKLPP 481 (1172)
T ss_pred HHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEE--EeccCCCchHHHHHHHHHHHHhhcCCC
Confidence 2222 467899999986553221111111 11222333333333 222222223222222222233445688
Q ss_pred ceEEEEecchhHHHHHHHHHHHH---------------------------------------------------------
Q 003178 632 YKVIVFCSTGMVTSLLYLLLREM--------------------------------------------------------- 654 (842)
Q Consensus 632 ~kiIVF~~s~~~~~~l~~~L~~~--------------------------------------------------------- 654 (842)
+.||||+..+.++.+|++.|++.
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 99999999999999999999831
Q ss_pred ------------------------------------------hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccc
Q 003178 655 ------------------------------------------KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 692 (842)
Q Consensus 655 ------------------------------------------~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~a 692 (842)
.+.|.+||+-++..++++++..-..|..-++|||+||+
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 01377889999999999999999999999999999999
Q ss_pred cCCCCCCcceeEEecC--------CC----------ChHHHHHHhhcCCCCCCCcceeEEecc
Q 003178 693 RGMDYPDVTSVVQVGI--------PP----------DREQYIHRLGRTGREGKEGEGVLLLAP 737 (842)
Q Consensus 693 rGlDip~V~~VI~yd~--------P~----------s~~~yiQRiGRaGR~G~~G~~i~ll~~ 737 (842)
..|.||+|.+||..+. -. |.++--||+|||||.| +|+||.+|+.
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 9999999999996553 33 3444579999999999 8999999986
No 85
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=4e-27 Score=262.43 Aligned_cols=323 Identities=19% Similarity=0.226 Sum_probs=236.8
Q ss_pred eeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
....+++-.+.+.++..++-+||.|.||||||. +||.+ |.+.+... .+.++-+..|.|..|..++.++.+-
T Consensus 263 sLPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQy--L~EaGytk-----~gk~IgcTQPRRVAAmSVAaRVA~E 333 (902)
T KOG0923|consen 263 SLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQY--LYEAGYTK-----GGKKIGCTQPRRVAAMSVAARVAEE 333 (902)
T ss_pred cCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHH--HHhccccc-----CCceEeecCcchHHHHHHHHHHHHH
Confidence 345566778888899999999999999999999 78876 66655432 2335789999999999999888776
Q ss_pred hhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccc-cc-cccchh
Q 003178 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LG-FRKDVE 556 (842)
Q Consensus 479 ~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld-~g-f~~~i~ 556 (842)
.+-..|-.|+.-+ ......+..+-|-++|.|+|++.+... .+|.++++|||||||.-.- .+ ....+.
T Consensus 334 MgvkLG~eVGYsI-------RFEdcTSekTvlKYMTDGmLlREfL~e----pdLasYSViiiDEAHERTL~TDILfgLvK 402 (902)
T KOG0923|consen 334 MGVKLGHEVGYSI-------RFEDCTSEKTVLKYMTDGMLLREFLSE----PDLASYSVIIVDEAHERTLHTDILFGLVK 402 (902)
T ss_pred hCcccccccceEE-------EeccccCcceeeeeecchhHHHHHhcc----ccccceeEEEeehhhhhhhhhhHHHHHHH
Confidence 6443333332211 111222334678999999999887765 5688999999999997431 11 111222
Q ss_pred hhhhcccccccceeecccCcchhh--ccccceeeeecccccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceE
Q 003178 557 NIVDCLPRRRQSLLFSATMPKELV--LKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKV 634 (842)
Q Consensus 557 ~Il~~l~~~~q~il~SATl~~~l~--~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~ki 634 (842)
.|. ...++..+++.|||+..+-. +..+... +........+..+|...+..+.++....-+.++....+.+-|
T Consensus 403 DIa-r~RpdLKllIsSAT~DAekFS~fFDdapI-----F~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDI 476 (902)
T KOG0923|consen 403 DIA-RFRPDLKLLISSATMDAEKFSAFFDDAPI-----FRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDI 476 (902)
T ss_pred HHH-hhCCcceEEeeccccCHHHHHHhccCCcE-----EeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccE
Confidence 222 33467889999999976621 1111111 112223345666777777777777777666666667788999
Q ss_pred EEEecchhHHHHHHHHHHHH---------hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEE
Q 003178 635 IVFCSTGMVTSLLYLLLREM---------KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ 705 (842)
Q Consensus 635 IVF~~s~~~~~~l~~~L~~~---------~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~ 705 (842)
|||...+++.+...+.|... .+-++++|+.++...+.++++.-..|-.+|++||++|+..|.|++|.+||.
T Consensus 477 LVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViD 556 (902)
T KOG0923|consen 477 LVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVID 556 (902)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEec
Confidence 99999999988888777654 245889999999999999999999999999999999999999999999995
Q ss_pred ecC------------------CCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCCCC
Q 003178 706 VGI------------------PPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKDLP 750 (842)
Q Consensus 706 yd~------------------P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~~~ 750 (842)
-+. |.+.++..||+|||||.| +|+|+.+|+.+. |.++|+..+
T Consensus 557 pGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~a--Y~~eLE~~t 616 (902)
T KOG0923|consen 557 PGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWA--YEHELEEMT 616 (902)
T ss_pred CccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhh--hhhhhccCC
Confidence 432 668889999999999999 999999999753 334444433
No 86
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.7e-28 Score=276.06 Aligned_cols=305 Identities=19% Similarity=0.243 Sum_probs=233.4
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.+-|+|..+|..+-++..|+|.|.|.+|||.++-.+|...+.... ++||.+|-++|.+|-|+++...++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ-----------RVIYTSPIKALSNQKYREl~~EF~ 197 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ-----------RVIYTSPIKALSNQKYRELLEEFK 197 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC-----------eEEeeChhhhhcchhHHHHHHHhc
Confidence 488999999999999999999999999999997777766665432 799999999999999999988876
Q ss_pred cCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhh
Q 003178 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (842)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~ 560 (842)
. |++.+|+..+.. .+..+|+|.+.|..+|..++. -++.+.+||+||+|.|-|...+-.++.-+-
T Consensus 198 D-----VGLMTGDVTInP--------~ASCLVMTTEILRsMLYRGSE---vmrEVaWVIFDEIHYMRDkERGVVWEETII 261 (1041)
T KOG0948|consen 198 D-----VGLMTGDVTINP--------DASCLVMTTEILRSMLYRGSE---VMREVAWVIFDEIHYMRDKERGVVWEETII 261 (1041)
T ss_pred c-----cceeecceeeCC--------CCceeeeHHHHHHHHHhccch---HhheeeeEEeeeehhccccccceeeeeeEE
Confidence 4 778899988754 268999999999999988743 356899999999999999888888888889
Q ss_pred cccccccceeecccCcchhh-------ccccceeeeeccccccccccccccccc---------ccCc-----hhhHHH--
Q 003178 561 CLPRRRQSLLFSATMPKELV-------LKREHTYIDTVGLGSVETPVKIKQSCL---------VAPH-----ELHFQI-- 617 (842)
Q Consensus 561 ~l~~~~q~il~SATl~~~l~-------~~~~~~~i~~v~~~~~~~~~~l~~~~~---------~~~~-----~~k~~~-- 617 (842)
.+|++.+.+++|||+|+... ++..+-.+ + .+...|..++++.. +++. ++.+..
T Consensus 262 llP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHV--V--YTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am 337 (1041)
T KOG0948|consen 262 LLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHV--V--YTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAM 337 (1041)
T ss_pred eccccceEEEEeccCCCHHHHHHHHHHHhcCCceE--E--eecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHH
Confidence 99999999999999999842 12221111 1 12223334444421 1111 111211
Q ss_pred ---------------------------------HHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHh---------
Q 003178 618 ---------------------------------LHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK--------- 655 (842)
Q Consensus 618 ---------------------------------L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~--------- 655 (842)
+..+++..+. ....++|||+-++++|+.++-.+.++.
T Consensus 338 ~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~-~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~ 416 (1041)
T KOG0948|consen 338 SVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME-RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKEL 416 (1041)
T ss_pred HHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHh-hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHH
Confidence 1122222221 123589999999999999988776421
Q ss_pred ------------------------------hhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEE
Q 003178 656 ------------------------------MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ 705 (842)
Q Consensus 656 ------------------------------~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~ 705 (842)
..+..+||++-+--++-+.-.|.+|-+++|+||.+++.|+|.|.-++|+-
T Consensus 417 V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT 496 (1041)
T KOG0948|consen 417 VETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT 496 (1041)
T ss_pred HHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe
Confidence 25788999999999999999999999999999999999999999888873
Q ss_pred ----ecCC----CChHHHHHHhhcCCCCCC--CcceeEEecc
Q 003178 706 ----VGIP----PDREQYIHRLGRTGREGK--EGEGVLLLAP 737 (842)
Q Consensus 706 ----yd~P----~s~~~yiQRiGRaGR~G~--~G~~i~ll~~ 737 (842)
||-- .+--+|+|+.|||||.|. .|.+|+++..
T Consensus 497 ~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 497 AVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred eccccCCcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 3321 356789999999999995 5777777764
No 87
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.95 E-value=3.4e-27 Score=266.49 Aligned_cols=308 Identities=20% Similarity=0.213 Sum_probs=223.7
Q ss_pred hhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCce
Q 003178 406 QEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI 485 (842)
Q Consensus 406 Q~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i 485 (842)
-.+.+..+..++-+||.|+||||||+ ++|.+ +.+.+.... | ++.+..|.|..|..++.++....+...|-
T Consensus 56 r~~il~~ve~nqvlIviGeTGsGKST--QipQy--L~eaG~~~~-----g-~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 56 RDQILYAVEDNQVLIVIGETGSGKST--QIPQY--LAEAGFASS-----G-KIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHHCCEEEEEcCCCCCccc--cHhHH--HHhcccccC-----C-cEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 34567777788999999999999999 78876 666654321 2 47899999999999998888776655454
Q ss_pred eEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccccccc-c-cccchhhhhhccc
Q 003178 486 GVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G-FRKDVENIVDCLP 563 (842)
Q Consensus 486 ~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~-g-f~~~i~~Il~~l~ 563 (842)
.|+..+-- ....+..+.|.++|.|.|++.+..+ ..|+++++|||||||+-.-. + ....+.+|+.. +
T Consensus 126 ~VGY~IRF-------ed~ts~~TrikymTDG~LLRE~l~D----p~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R 193 (674)
T KOG0922|consen 126 EVGYTIRF-------EDSTSKDTRIKYMTDGMLLREILKD----PLLSKYSVIILDEAHERSLHTDILLGLLKKILKK-R 193 (674)
T ss_pred eeeeEEEe-------cccCCCceeEEEecchHHHHHHhcC----CccccccEEEEechhhhhhHHHHHHHHHHHHHhc-C
Confidence 44443221 1122234799999999999988776 45789999999999984321 0 11122233322 2
Q ss_pred ccccceeecccCcchhhccccceeeeecccccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhH
Q 003178 564 RRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMV 643 (842)
Q Consensus 564 ~~~q~il~SATl~~~l~~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~ 643 (842)
+..++|++|||+..+..-.. |.....+........+...|...+..+........+.++....+.+.||||.+.+++
T Consensus 194 ~~LklIimSATlda~kfS~y---F~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeE 270 (674)
T KOG0922|consen 194 PDLKLIIMSATLDAEKFSEY---FNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEE 270 (674)
T ss_pred CCceEEEEeeeecHHHHHHH---hcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHH
Confidence 35689999999987632110 000111111222334555555556555555544444444455788899999999999
Q ss_pred HHHHHHHHHHHhh--------hHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecC-------
Q 003178 644 TSLLYLLLREMKM--------NVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGI------- 708 (842)
Q Consensus 644 ~~~l~~~L~~~~~--------~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~------- 708 (842)
++.+++.|.+..- -+.++||.|+..++.+++..-..|..+|+|+|++++..|.||+|.+||+-+.
T Consensus 271 Ie~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~ 350 (674)
T KOG0922|consen 271 IEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYN 350 (674)
T ss_pred HHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeec
Confidence 9999999987621 2468999999999999999999999999999999999999999999996442
Q ss_pred -----------CCChHHHHHHhhcCCCCCCCcceeEEeccch
Q 003178 709 -----------PPDREQYIHRLGRTGREGKEGEGVLLLAPWE 739 (842)
Q Consensus 709 -----------P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E 739 (842)
|.|.++-.||+|||||.| +|+|+.+|+..+
T Consensus 351 p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~ 391 (674)
T KOG0922|consen 351 PRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESA 391 (674)
T ss_pred cccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHH
Confidence 678999999999999988 999999998765
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=3e-27 Score=273.96 Aligned_cols=291 Identities=18% Similarity=0.185 Sum_probs=189.0
Q ss_pred EEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec
Q 003178 420 VVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499 (842)
Q Consensus 420 ii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~ 499 (842)
++.|+||||||.+|+..+ ..++..+ .++|||+|+++|+.|+++.+++.++ ..+..++++......
T Consensus 1 LL~g~TGsGKT~v~l~~i-~~~l~~g----------~~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~er 65 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAI-EKVLALG----------KSVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSEK 65 (505)
T ss_pred CccCCCCCCHHHHHHHHH-HHHHHcC----------CeEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHHH
Confidence 468999999999986544 4443322 2699999999999999999988753 456677776543322
Q ss_pred ---cccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccc-cc--hh--hhhhcccccccceee
Q 003178 500 ---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR-KD--VE--NIVDCLPRRRQSLLF 571 (842)
Q Consensus 500 ---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~-~~--i~--~Il~~l~~~~q~il~ 571 (842)
...+..+.++|+|+|+..+. ..+.++++|||||+|....++.. .. .. .++.....+.++|++
T Consensus 66 ~~~~~~~~~g~~~IVVGTrsalf----------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~ 135 (505)
T TIGR00595 66 LQAWRKVKNGEILVVIGTRSALF----------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLG 135 (505)
T ss_pred HHHHHHHHcCCCCEEECChHHHc----------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEE
Confidence 22334456899999998663 23568999999999987644311 11 11 122223357889999
Q ss_pred cccCcchhhccccceeeeeccccccccccccccc-ccccCch----hhHHHHHHHHhhhhcCCCCceEEEEecchhH---
Q 003178 572 SATMPKELVLKREHTYIDTVGLGSVETPVKIKQS-CLVAPHE----LHFQILHHLLKEHILGTPDYKVIVFCSTGMV--- 643 (842)
Q Consensus 572 SATl~~~l~~~~~~~~i~~v~~~~~~~~~~l~~~-~~~~~~~----~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~--- 643 (842)
|||++.+............+..........+... ++-.... ..-..+...+.+.+. .+.++|||+|++.-
T Consensus 136 SATPsles~~~~~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~--~g~qvLvflnrrGya~~ 213 (505)
T TIGR00595 136 SATPSLESYHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA--AGEQSILFLNRRGYSKN 213 (505)
T ss_pred eCCCCHHHHHHHhcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH--cCCcEEEEEeCCcCCCe
Confidence 9997655322111111111111100000000000 0000000 011234444444442 35689999665321
Q ss_pred ---------------------------------------------------------HHHHHHHHHHH--hhhHHHHhhc
Q 003178 644 ---------------------------------------------------------TSLLYLLLREM--KMNVREMYSR 664 (842)
Q Consensus 644 ---------------------------------------------------------~~~l~~~L~~~--~~~v~~lhg~ 664 (842)
++.+.+.|.+. +.++..+|++
T Consensus 214 ~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d 293 (505)
T TIGR00595 214 LLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSD 293 (505)
T ss_pred eEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecc
Confidence 57777888776 6788999999
Q ss_pred Ccchhh--hhhhHHHhhcceEEEEeccccccCCCCCCcceeE--EecC----CC------ChHHHHHHhhcCCCCCCCcc
Q 003178 665 KPQLYR--DRISEEFRASKRLILVTSDVSARGMDYPDVTSVV--QVGI----PP------DREQYIHRLGRTGREGKEGE 730 (842)
Q Consensus 665 ~~~~~R--~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI--~yd~----P~------s~~~yiQRiGRaGR~G~~G~ 730 (842)
+++..+ ..+++.|++|+.+|||+|+++++|+|+|+|++|+ ++|. |. ....|+|++||+||.++.|.
T Consensus 294 ~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~ 373 (505)
T TIGR00595 294 TTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQ 373 (505)
T ss_pred cccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCE
Confidence 988776 8999999999999999999999999999999986 4553 21 24678999999999999999
Q ss_pred eeEEecc
Q 003178 731 GVLLLAP 737 (842)
Q Consensus 731 ~i~ll~~ 737 (842)
+++....
T Consensus 374 viiqt~~ 380 (505)
T TIGR00595 374 VIIQTYN 380 (505)
T ss_pred EEEEeCC
Confidence 8865543
No 89
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=6e-27 Score=278.96 Aligned_cols=307 Identities=19% Similarity=0.238 Sum_probs=226.9
Q ss_pred hhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCc
Q 003178 405 VQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDG 484 (842)
Q Consensus 405 iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~ 484 (842)
...+.+.++.++.-+||+|+||||||+ ++|.+ ++..... .+..+.++-|.|-.|..+++++.+.++...|
T Consensus 54 ~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~--lle~g~~------~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 54 VRDEILKAIEQNQVVIIVGETGSGKTT--QLPQF--LLEEGLG------IAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred HHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHH--HHhhhcc------cCCeEEecCchHHHHHHHHHHHHHHhCCCcC
Confidence 344566677778899999999999999 77766 5555431 1236889999999999999999888876555
Q ss_pred eeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccccc-ccccc-cchhhhhhcc
Q 003178 485 IGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL-DLGFR-KDVENIVDCL 562 (842)
Q Consensus 485 i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~ll-d~gf~-~~i~~Il~~l 562 (842)
-.|++.+-..+ ..+..+.|.|+|.|.|++.+.++ ..|+.+++|||||||+-. +.+|. ..+..++...
T Consensus 124 ~~VGY~iRfe~-------~~s~~Trik~mTdGiLlrei~~D----~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~r 192 (845)
T COG1643 124 ETVGYSIRFES-------KVSPRTRIKVMTDGILLREIQND----PLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARR 192 (845)
T ss_pred ceeeEEEEeec-------cCCCCceeEEeccHHHHHHHhhC----cccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhc
Confidence 44444332222 22345799999999999999876 458899999999999854 33322 2234456666
Q ss_pred cccccceeecccCcchhh--ccccceeeeecccccccccccccccccccC-chh-hHHHHHHHHhhhhcCCCCceEEEEe
Q 003178 563 PRRRQSLLFSATMPKELV--LKREHTYIDTVGLGSVETPVKIKQSCLVAP-HEL-HFQILHHLLKEHILGTPDYKVIVFC 638 (842)
Q Consensus 563 ~~~~q~il~SATl~~~l~--~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~-~~~-k~~~L~~lL~~~~~~~~~~kiIVF~ 638 (842)
+.+.++|+||||+..+-. +..+...+ .+.. ....+..+|.... .+. -...+...+..+.. ...+.+|||+
T Consensus 193 r~DLKiIimSATld~~rfs~~f~~apvi---~i~G--R~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~-~~~GdILvFL 266 (845)
T COG1643 193 RDDLKLIIMSATLDAERFSAYFGNAPVI---EIEG--RTYPVEIRYLPEAEADYILLDAIVAAVDIHLR-EGSGSILVFL 266 (845)
T ss_pred CCCceEEEEecccCHHHHHHHcCCCCEE---EecC--CccceEEEecCCCCcchhHHHHHHHHHHHhcc-CCCCCEEEEC
Confidence 667899999999987632 11111111 1112 2223333442222 233 34455555555544 3577999999
Q ss_pred cchhHHHHHHHHHHH--H--hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecC------
Q 003178 639 STGMVTSLLYLLLRE--M--KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGI------ 708 (842)
Q Consensus 639 ~s~~~~~~l~~~L~~--~--~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~------ 708 (842)
+...++..+++.|.+ + .+.++++||.|+..++.++++.-..|+.+|++||++++.+|.||+|++||.-+.
T Consensus 267 pG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y 346 (845)
T COG1643 267 PGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRY 346 (845)
T ss_pred CcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccc
Confidence 999999999999997 3 477999999999999999999999998899999999999999999999996543
Q ss_pred ------------CCChHHHHHHhhcCCCCCCCcceeEEeccch
Q 003178 709 ------------PPDREQYIHRLGRTGREGKEGEGVLLLAPWE 739 (842)
Q Consensus 709 ------------P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E 739 (842)
|.|.++..||.|||||.+ +|.||.+++..+
T Consensus 347 ~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~ 388 (845)
T COG1643 347 DPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEED 388 (845)
T ss_pred ccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHH
Confidence 568899999999999988 999999998744
No 90
>PRK09694 helicase Cas3; Provisional
Probab=99.94 E-value=8.3e-27 Score=281.72 Aligned_cols=311 Identities=20% Similarity=0.226 Sum_probs=197.2
Q ss_pred eeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
...|+|+|..+........-+||.||||+|||.++++.+. .+...... -+++|..||+++++|+++++.++
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~-~l~~~~~~--------~gi~~aLPT~Atan~m~~Rl~~~ 354 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAW-RLIDQGLA--------DSIIFALPTQATANAMLSRLEAL 354 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHH-HHHHhCCC--------CeEEEECcHHHHHHHHHHHHHHH
Confidence 3479999998865544566789999999999999655544 44432211 15899999999999999999875
Q ss_pred hhcC-CceeEEEEecceeeeeccc---------------------ccc---C--CCceEEecCccchhhhccccCCceEE
Q 003178 479 LKNH-DGIGVLTLVGGTRFKVDQR---------------------RLE---S--DPCQILVATPGRLLDHIENKSGLSVR 531 (842)
Q Consensus 479 ~~~~-~~i~v~~l~Gg~~~~~~~~---------------------~l~---~--~~~~IIVaTPgrLl~~L~~~~~~~~~ 531 (842)
+... ....+.++.|......... .+. + --..|+|||...++..+..... ..
T Consensus 355 ~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh--~~ 432 (878)
T PRK09694 355 ASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH--RF 432 (878)
T ss_pred HHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch--HH
Confidence 5421 2335666666544221100 000 0 0158999999988753322211 11
Q ss_pred Eec----ceeeeecccccccccccccchhhhhhccc-ccccceeecccCcchhhc--ccc------------ceeeeecc
Q 003178 532 LMG----LKMLVLDEADHLLDLGFRKDVENIVDCLP-RRRQSLLFSATMPKELVL--KRE------------HTYIDTVG 592 (842)
Q Consensus 532 L~~----l~~lVlDEAh~lld~gf~~~i~~Il~~l~-~~~q~il~SATl~~~l~~--~~~------------~~~i~~v~ 592 (842)
+.. -++|||||+|.+-. .....+..++..+. ....+|+||||+|..+.. ... +..+....
T Consensus 433 lR~~~La~svvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~ 511 (878)
T PRK09694 433 IRGFGLGRSVLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRG 511 (878)
T ss_pred HHHHhhccCeEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccc
Confidence 111 35899999998632 22334444444432 246799999999986421 000 00000000
Q ss_pred cc-cccccc-------cccccccc--c--Cc-hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHh---h
Q 003178 593 LG-SVETPV-------KIKQSCLV--A--PH-ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK---M 656 (842)
Q Consensus 593 ~~-~~~~~~-------~l~~~~~~--~--~~-~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~---~ 656 (842)
.. ...... .....+.+ . .. ......+..++... ..++++||||||++.+..+++.|++.. .
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~---~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~ 588 (878)
T PRK09694 512 VNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA---NAGAQVCLICNLVDDAQKLYQRLKELNNTQV 588 (878)
T ss_pred cccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH---hcCCEEEEEECCHHHHHHHHHHHHhhCCCCc
Confidence 00 000000 00000000 0 00 11122233333222 246789999999999999999999764 5
Q ss_pred hHHHHhhcCcchhh----hhhhHHH-hhcc---eEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCC
Q 003178 657 NVREMYSRKPQLYR----DRISEEF-RASK---RLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGK 727 (842)
Q Consensus 657 ~v~~lhg~~~~~~R----~~v~~~F-~~g~---~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~ 727 (842)
.+..+||++++.+| .++++.| ++|+ ..|||||+++++|||| ++++||....| ++.|+||+||+||.+.
T Consensus 589 ~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 589 DIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 78999999999999 4567788 6666 4799999999999999 68999998888 6899999999999885
No 91
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.5e-26 Score=276.89 Aligned_cols=319 Identities=18% Similarity=0.189 Sum_probs=234.9
Q ss_pred ccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHH
Q 003178 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (842)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l 475 (842)
..+|+ +.++|++++-.+..+..|+|+||||||||++.-.++...+..+. +++|++|.++|.+|.++++
T Consensus 115 ~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q-----------rviYTsPIKALsNQKyrdl 182 (1041)
T COG4581 115 EYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-----------RVIYTSPIKALSNQKYRDL 182 (1041)
T ss_pred hCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-----------ceEeccchhhhhhhHHHHH
Confidence 45665 89999999999999999999999999999986665554444322 5899999999999999999
Q ss_pred HHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccch
Q 003178 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555 (842)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i 555 (842)
...++.. .-.+.+++|+.++.. .+.|+|+|.+.|..+|..+ ...+..+.+||+||+|.|.|...+..+
T Consensus 183 ~~~fgdv-~~~vGL~TGDv~IN~--------~A~clvMTTEILRnMlyrg---~~~~~~i~~ViFDEvHyi~D~eRG~VW 250 (1041)
T COG4581 183 LAKFGDV-ADMVGLMTGDVSINP--------DAPCLVMTTEILRNMLYRG---SESLRDIEWVVFDEVHYIGDRERGVVW 250 (1041)
T ss_pred HHHhhhh-hhhccceecceeeCC--------CCceEEeeHHHHHHHhccC---cccccccceEEEEeeeeccccccchhH
Confidence 8887643 234688999988753 4789999999999999877 345778999999999999999999999
Q ss_pred hhhhhcccccccceeecccCcchhhccccce---eeeeccccccccccccccccccc-------Cchhh-----HH-HHH
Q 003178 556 ENIVDCLPRRRQSLLFSATMPKELVLKREHT---YIDTVGLGSVETPVKIKQSCLVA-------PHELH-----FQ-ILH 619 (842)
Q Consensus 556 ~~Il~~l~~~~q~il~SATl~~~l~~~~~~~---~i~~v~~~~~~~~~~l~~~~~~~-------~~~~k-----~~-~L~ 619 (842)
+.++-.+|...|+|+||||+|+...+..-.. -.+...+.....|+.+.+++... ....+ +. ...
T Consensus 251 EE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~ 330 (1041)
T COG4581 251 EEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANR 330 (1041)
T ss_pred HHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhh
Confidence 9999999999999999999998732110000 00011112223344444433221 00000 00 000
Q ss_pred HHH-------------------------------------hhhhcCCCCceEEEEecchhHHHHHHHHHHHH--------
Q 003178 620 HLL-------------------------------------KEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-------- 654 (842)
Q Consensus 620 ~lL-------------------------------------~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~-------- 654 (842)
.+. ..++......++|+|+-+++.|+.++..+..+
T Consensus 331 ~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~ 410 (1041)
T COG4581 331 SLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEK 410 (1041)
T ss_pred hhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcH
Confidence 011 00111123358999999999999888776511
Q ss_pred --------------------h-------------hhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcc
Q 003178 655 --------------------K-------------MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVT 701 (842)
Q Consensus 655 --------------------~-------------~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~ 701 (842)
+ -.+..+|++|-+..+..+...|..|-++||+||.+++.|+|+|.-+
T Consensus 411 e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPart 490 (1041)
T COG4581 411 ERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPART 490 (1041)
T ss_pred HHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccc
Confidence 1 1367899999999999999999999999999999999999999988
Q ss_pred eeE----Eec----CCCChHHHHHHhhcCCCCCC--CcceeEEeccc
Q 003178 702 SVV----QVG----IPPDREQYIHRLGRTGREGK--EGEGVLLLAPW 738 (842)
Q Consensus 702 ~VI----~yd----~P~s~~~yiQRiGRaGR~G~--~G~~i~ll~~~ 738 (842)
+|+ .+| ..-++.+|.|+.|||||.|- .|.++++-.+.
T Consensus 491 vv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 491 VVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred eeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 877 222 34578999999999999994 57777765543
No 92
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.94 E-value=4.7e-26 Score=276.73 Aligned_cols=317 Identities=19% Similarity=0.209 Sum_probs=201.7
Q ss_pred eeeehhhhhhhhhhcC--cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 401 QMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g--~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
.|.|+|..++..++.. ..+++...+|.|||+...+ ++..++..+.. -++|||||+ .|..||..++.+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAgl-il~~l~~~g~~--------~rvLIVvP~-sL~~QW~~El~~k 221 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGM-IIHQQLLTGRA--------ERVLILVPE-TLQHQWLVEMLRR 221 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHH-HHHHHHHcCCC--------CcEEEEcCH-HHHHHHHHHHHHH
Confidence 4889999988776653 4789999999999998544 33333332211 159999997 8999999998766
Q ss_pred hhcCCceeEEEEecceeee--eccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccc-cccch
Q 003178 479 LKNHDGIGVLTLVGGTRFK--VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-FRKDV 555 (842)
Q Consensus 479 ~~~~~~i~v~~l~Gg~~~~--~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~g-f~~~i 555 (842)
+. +...++.++.-.. ....... ...+++|+|.+.|...-.... .+.-..+++|||||||++-... -....
T Consensus 222 F~----l~~~i~~~~~~~~~~~~~~~pf-~~~~~vI~S~~~l~~~~~~~~--~l~~~~wdlvIvDEAH~lk~~~~~~s~~ 294 (956)
T PRK04914 222 FN----LRFSLFDEERYAEAQHDADNPF-ETEQLVICSLDFLRRNKQRLE--QALAAEWDLLVVDEAHHLVWSEEAPSRE 294 (956)
T ss_pred hC----CCeEEEcCcchhhhcccccCcc-ccCcEEEEEHHHhhhCHHHHH--HHhhcCCCEEEEechhhhccCCCCcCHH
Confidence 53 3333332221110 0000011 125899999887754210000 0111368999999999986311 11111
Q ss_pred hhhhhcc-cccccceeecccCcch--------h------------hc------------------cccc----------e
Q 003178 556 ENIVDCL-PRRRQSLLFSATMPKE--------L------------VL------------------KREH----------T 586 (842)
Q Consensus 556 ~~Il~~l-~~~~q~il~SATl~~~--------l------------~~------------------~~~~----------~ 586 (842)
...+..+ .+...++++|||+-.. + .+ .... .
T Consensus 295 y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ 374 (956)
T PRK04914 295 YQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGE 374 (956)
T ss_pred HHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 2222222 2345689999996431 0 00 0000 0
Q ss_pred eee-------------------------------ecccc-----c-----ccccccccccc-c-----------------
Q 003178 587 YID-------------------------------TVGLG-----S-----VETPVKIKQSC-L----------------- 607 (842)
Q Consensus 587 ~i~-------------------------------~v~~~-----~-----~~~~~~l~~~~-~----------------- 607 (842)
++. ..+.. . ...|.+..+.+ +
T Consensus 375 ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~ 454 (956)
T PRK04914 375 LLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEAR 454 (956)
T ss_pred HhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHH
Confidence 000 00000 0 00000000000 0
Q ss_pred -------------------ccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHH-HHhhhHHHHhhcCcc
Q 003178 608 -------------------VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR-EMKMNVREMYSRKPQ 667 (842)
Q Consensus 608 -------------------~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~-~~~~~v~~lhg~~~~ 667 (842)
....+.|...|..++.. ....|+||||+++..+..+...|+ ..|+.+..+||+|++
T Consensus 455 ~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~----~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~ 530 (956)
T PRK04914 455 ARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKS----HRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSI 530 (956)
T ss_pred HHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHh----cCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCH
Confidence 00111233444444443 246799999999999999999994 569999999999999
Q ss_pred hhhhhhhHHHhhc--ceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccc
Q 003178 668 LYRDRISEEFRAS--KRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPW 738 (842)
Q Consensus 668 ~~R~~v~~~F~~g--~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~ 738 (842)
.+|.++++.|+++ ...|||||+++++|+|++.+++||+||+|+++..|+||+||++|.|+.+.+.+++...
T Consensus 531 ~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~ 603 (956)
T PRK04914 531 IERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYL 603 (956)
T ss_pred HHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccC
Confidence 9999999999984 5999999999999999999999999999999999999999999999998876666543
No 93
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=5.2e-26 Score=259.56 Aligned_cols=322 Identities=23% Similarity=0.279 Sum_probs=234.1
Q ss_pred CchhHhhh-cccceeeeeehhhhhhhhhhcC------cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEE
Q 003178 387 SPLTIKAL-TAAGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (842)
Q Consensus 387 ~~~l~~~L-~~~g~~~~t~iQ~~aI~~il~g------~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~L 459 (842)
+..+++.+ ..+.|. +|.-|++++..|... .+-+++|.-|||||+++++.++..+-.. .++.
T Consensus 248 ~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-----------~Q~A 315 (677)
T COG1200 248 NGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-----------YQAA 315 (677)
T ss_pred cHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC-----------CeeE
Confidence 33344443 456665 999999999998863 3568999999999999999888776543 3689
Q ss_pred EeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEecce
Q 003178 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (842)
Q Consensus 460 IL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~ 536 (842)
.++||--||.|.++.+.+++... ++.|..++|...-... ...+.++..+|+|+|..-+.+ ...++++.
T Consensus 316 LMAPTEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd--------~V~F~~Lg 386 (677)
T COG1200 316 LMAPTEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD--------KVEFHNLG 386 (677)
T ss_pred EeccHHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc--------ceeeccee
Confidence 99999999999999999999876 6999999998765433 345566779999999654433 25678999
Q ss_pred eeeecccccccccccccchhhhhhcccc-cccceeecccCcch-hhccccceeeeecccccccccccccccccccCchhh
Q 003178 537 MLVLDEADHLLDLGFRKDVENIVDCLPR-RRQSLLFSATMPKE-LVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELH 614 (842)
Q Consensus 537 ~lVlDEAh~lld~gf~~~i~~Il~~l~~-~~q~il~SATl~~~-l~~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k 614 (842)
++|+||=|+ |+-.=+..+..-.. .+-+++||||+-+. +.+.. +.-++...+...+.. +......+++.+.
T Consensus 387 LVIiDEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~-fgDldvS~IdElP~G-RkpI~T~~i~~~~- 458 (677)
T COG1200 387 LVIIDEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTA-FGDLDVSIIDELPPG-RKPITTVVIPHER- 458 (677)
T ss_pred EEEEecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHH-hccccchhhccCCCC-CCceEEEEecccc-
Confidence 999999999 44433444444344 56789999997554 32221 111111111222111 1112222333333
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEecchhHH--------HHHHHHHHHH--hhhHHHHhhcCcchhhhhhhHHHhhcceEE
Q 003178 615 FQILHHLLKEHILGTPDYKVIVFCSTGMVT--------SLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLI 684 (842)
Q Consensus 615 ~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~--------~~l~~~L~~~--~~~v~~lhg~~~~~~R~~v~~~F~~g~~~V 684 (842)
...+...+..-+. .+.++.|.||-.++. ..++..|+.. ++.+..+||.|+..++..+++.|++|+++|
T Consensus 459 ~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~I 536 (677)
T COG1200 459 RPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDI 536 (677)
T ss_pred HHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcE
Confidence 3334444444432 567999999876544 4556666633 456899999999999999999999999999
Q ss_pred EEeccccccCCCCCCcceeEEecCC-CChHHHHHHhhcCCCCCCCcceeEEeccch
Q 003178 685 LVTSDVSARGMDYPDVTSVVQVGIP-PDREQYIHRLGRTGREGKEGEGVLLLAPWE 739 (842)
Q Consensus 685 LVaTdv~arGlDip~V~~VI~yd~P-~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E 739 (842)
||||.|++.|||+|+.+++|.++.- ...++.-|--||.||.+..+.|++++.+..
T Consensus 537 LVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 537 LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999999999998875 467888999999999999999999998755
No 94
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=9.5e-26 Score=267.35 Aligned_cols=318 Identities=18% Similarity=0.224 Sum_probs=216.5
Q ss_pred eeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhc
Q 003178 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (842)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~ 481 (842)
++++|...--.+ +.--|+.++||+|||++|++|++..++... .++|++||++||.|.++++..++..
T Consensus 83 ~ydvQliGg~~L--h~G~Iaem~TGeGKTL~a~Lpa~~~al~G~-----------~V~VvTpn~yLA~qd~e~m~~l~~~ 149 (896)
T PRK13104 83 HFDVQLIGGMVL--HEGNIAEMRTGEGKTLVATLPAYLNAISGR-----------GVHIVTVNDYLAKRDSQWMKPIYEF 149 (896)
T ss_pred cchHHHhhhhhh--ccCccccccCCCCchHHHHHHHHHHHhcCC-----------CEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 556664443333 444589999999999999999997765431 3899999999999999999999877
Q ss_pred CCceeEEEEecceeeeeccccccCCCceEEecCccch-hhhccccCCceE---EEecceeeeeccccccc-ccccc----
Q 003178 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGLSV---RLMGLKMLVLDEADHLL-DLGFR---- 552 (842)
Q Consensus 482 ~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrL-l~~L~~~~~~~~---~L~~l~~lVlDEAh~ll-d~gf~---- 552 (842)
. ++.+.+++|+.+.......+ .++|+|+||++| .++|..+..+.. -...+.++||||||.|+ |....
T Consensus 150 l-GLtv~~i~gg~~~~~r~~~y---~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLII 225 (896)
T PRK13104 150 L-GLTVGVIYPDMSHKEKQEAY---KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLII 225 (896)
T ss_pred c-CceEEEEeCCCCHHHHHHHh---CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceee
Confidence 5 89999999997765433333 389999999999 899876532211 12579999999999976 32111
Q ss_pred -----------cchhhhhhcccc--------------cccceeeccc--------------Cc--------ch-------
Q 003178 553 -----------KDVENIVDCLPR--------------RRQSLLFSAT--------------MP--------KE------- 578 (842)
Q Consensus 553 -----------~~i~~Il~~l~~--------------~~q~il~SAT--------------l~--------~~------- 578 (842)
..+..++..+.. ..+.+.+|-. ++ ..
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i 305 (896)
T PRK13104 226 SGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHV 305 (896)
T ss_pred eCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHH
Confidence 011111111111 1111111110 00 00
Q ss_pred ---h----hccccceeee------ecc-----------------------------------------------------
Q 003178 579 ---L----VLKREHTYID------TVG----------------------------------------------------- 592 (842)
Q Consensus 579 ---l----~~~~~~~~i~------~v~----------------------------------------------------- 592 (842)
+ .+..+..|+- .+.
T Consensus 306 ~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGM 385 (896)
T PRK13104 306 NAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGM 385 (896)
T ss_pred HHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccC
Confidence 0 0001111110 000
Q ss_pred ----------------cccccccccc------cccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHH
Q 003178 593 ----------------LGSVETPVKI------KQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLL 650 (842)
Q Consensus 593 ----------------~~~~~~~~~l------~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~ 650 (842)
+.....|.+. ....++.....|+..+...+.... ..+.++||||+|+..++.++.+
T Consensus 386 TGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~--~~g~PVLVgt~Sie~sE~ls~~ 463 (896)
T PRK13104 386 TGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECG--VRKQPVLVGTVSIEASEFLSQL 463 (896)
T ss_pred CCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCcHHHHHHHHHH
Confidence 0000000000 011122334556666666665543 3577999999999999999999
Q ss_pred HHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCC-------------------------------
Q 003178 651 LREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPD------------------------------- 699 (842)
Q Consensus 651 L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~------------------------------- 699 (842)
|.+.++++..||+.+.+.++..+.+.|+.|. |+||||+|+||+||.=
T Consensus 464 L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (896)
T PRK13104 464 LKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRH 541 (896)
T ss_pred HHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999995 9999999999999851
Q ss_pred -------cceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchh
Q 003178 700 -------VTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 740 (842)
Q Consensus 700 -------V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~ 740 (842)
==+||-...+.|..---|-.|||||-|.+|.+-.|++=.|.
T Consensus 542 ~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 542 DEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred hHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12678888888888889999999999999999999886553
No 95
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=2.6e-25 Score=262.95 Aligned_cols=150 Identities=21% Similarity=0.325 Sum_probs=125.5
Q ss_pred cccCCCchhHhhhc-----ccceeee---eehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCccccc
Q 003178 382 DECGISPLTIKALT-----AAGYIQM---TRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLV 453 (842)
Q Consensus 382 ~~l~l~~~l~~~L~-----~~g~~~~---t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~ 453 (842)
+.+++.+.+.+.+. .+||..| +|+|.++|+.++.++++|++|+||+|||++|++|++..++...
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~-------- 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK-------- 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC--------
Confidence 56778888888776 6899988 9999999999999999999999999999999999998876421
Q ss_pred CceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccch-hhhccccCCceEE-
Q 003178 454 PPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGLSVR- 531 (842)
Q Consensus 454 ~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrL-l~~L~~~~~~~~~- 531 (842)
.++||+||++||.|+++++..+..+. ++++.+++||.+...+...+ .++|+|||||+| +++|..... ...
T Consensus 137 ---~v~IVTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y---~~DIVygTPgRLgfDyLrd~~~-~~~~ 208 (970)
T PRK12899 137 ---PVHLVTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIY---QCDVVYGTASEFGFDYLRDNSI-ATRK 208 (970)
T ss_pred ---CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHc---CCCEEEECCChhHHHHhhCCCC-CcCH
Confidence 27899999999999999999998765 79999999998877554443 389999999999 999976521 111
Q ss_pred ----Eecceeeeeccccccc
Q 003178 532 ----LMGLKMLVLDEADHLL 547 (842)
Q Consensus 532 ----L~~l~~lVlDEAh~ll 547 (842)
...+.++||||||.|+
T Consensus 209 ~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 209 EEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HHhhcccccEEEEechhhhh
Confidence 2356899999999987
No 96
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.93 E-value=3.4e-26 Score=235.33 Aligned_cols=188 Identities=44% Similarity=0.680 Sum_probs=162.9
Q ss_pred ccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEE
Q 003178 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLI 460 (842)
Q Consensus 381 F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LI 460 (842)
|+++++++.+.+.|.++|+..|+++|.++++.+++|+++++++|||+|||++|++|+++.+..... ..++++||
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~------~~~~~vii 74 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK------KDGPQALI 74 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc------cCCceEEE
Confidence 688999999999999999999999999999999999999999999999999999999998877531 12357999
Q ss_pred eccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeee
Q 003178 461 LCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVL 540 (842)
Q Consensus 461 L~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVl 540 (842)
++||++|+.|+...+..+.... ++.+..++|+.........+. ..++|+|+||+.|.+++.... ..+.+++++|+
T Consensus 75 i~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~l~~~~---~~~~~l~~lIv 149 (203)
T cd00268 75 LAPTRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLK-RGPHIVVATPGRLLDLLERGK---LDLSKVKYLVL 149 (203)
T ss_pred EcCCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhc-CCCCEEEEChHHHHHHHHcCC---CChhhCCEEEE
Confidence 9999999999999999887653 678888888877644443333 458999999999999887653 45678999999
Q ss_pred cccccccccccccchhhhhhcccccccceeecccCcchh
Q 003178 541 DEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (842)
Q Consensus 541 DEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l 579 (842)
||||.+.+.+|...+..++..+++.+|++++|||+++..
T Consensus 150 DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~ 188 (203)
T cd00268 150 DEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEV 188 (203)
T ss_pred eChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHH
Confidence 999999998899999999999998999999999999764
No 97
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.93 E-value=1.8e-25 Score=255.99 Aligned_cols=289 Identities=25% Similarity=0.317 Sum_probs=197.1
Q ss_pred eeeeehhhhhhhhhhc----CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHH
Q 003178 400 IQMTRVQEATLSACLE----GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~----g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l 475 (842)
..++++|++++..+.. ++..++++|||+|||++++. ++..+.. .+||||||++|+.|+++.+
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~-~~~~~~~-------------~~Lvlv~~~~L~~Qw~~~~ 100 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAE-AIAELKR-------------STLVLVPTKELLDQWAEAL 100 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHH-HHHHhcC-------------CEEEEECcHHHHHHHHHHH
Confidence 3589999999999998 88999999999999997433 3222211 2899999999999999777
Q ss_pred HHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhh--ccccCCceEEEecceeeeeccccccccccccc
Q 003178 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDH--IENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553 (842)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~--L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~ 553 (842)
...+... ..+..+.|+.. ... . ..|.|+|...+... +.. .....+.+||+||||++....+..
T Consensus 101 ~~~~~~~--~~~g~~~~~~~-~~~-----~--~~i~vat~qtl~~~~~l~~-----~~~~~~~liI~DE~Hh~~a~~~~~ 165 (442)
T COG1061 101 KKFLLLN--DEIGIYGGGEK-ELE-----P--AKVTVATVQTLARRQLLDE-----FLGNEFGLIIFDEVHHLPAPSYRR 165 (442)
T ss_pred HHhcCCc--cccceecCcee-ccC-----C--CcEEEEEhHHHhhhhhhhh-----hcccccCEEEEEccccCCcHHHHH
Confidence 7765432 12333333322 211 0 36999999988764 221 122368999999999988765544
Q ss_pred chhhhhhcccccccceeecccCcchhhcc-c-cceeee----ecccc-----ccccccccccc-----------------
Q 003178 554 DVENIVDCLPRRRQSLLFSATMPKELVLK-R-EHTYID----TVGLG-----SVETPVKIKQS----------------- 605 (842)
Q Consensus 554 ~i~~Il~~l~~~~q~il~SATl~~~l~~~-~-~~~~i~----~v~~~-----~~~~~~~l~~~----------------- 605 (842)
.. ..+......+++|||++...... . -...+. ..... ..-.+..+...
T Consensus 166 ~~----~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~ 241 (442)
T COG1061 166 IL----ELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESA 241 (442)
T ss_pred HH----HhhhcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhh
Confidence 33 33322222899999977442000 0 000000 00000 00000000000
Q ss_pred -------------------ccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCc
Q 003178 606 -------------------CLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKP 666 (842)
Q Consensus 606 -------------------~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~ 666 (842)
........+...+..++..+. .+.++||||.+..++..++..|...++ +..+.+..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~ 317 (442)
T COG1061 242 RFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA---RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETP 317 (442)
T ss_pred hhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc---CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCC
Confidence 000111222233333333332 356999999999999999999988777 889999999
Q ss_pred chhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCC
Q 003178 667 QLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGRE 725 (842)
Q Consensus 667 ~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~ 725 (842)
+.+|..+++.|+.|...+||++.++..|+|+|+++++|......|+..|+||+||.-|.
T Consensus 318 ~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 318 KEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999993
No 98
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=3.6e-25 Score=261.37 Aligned_cols=319 Identities=19% Similarity=0.248 Sum_probs=215.6
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.|+++|.-+--.+..|+ |+.+.||+|||++..+|++...+... .+-|++||-.||.|-++.+..++.
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~-----------~v~vvT~neyLA~Rd~e~~~~~~~ 146 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGK-----------GVHVVTVNEYLSSRDATEMGELYR 146 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCC-----------CeEEEeccHHHHHhhHHHHHHHHH
Confidence 47788877666666665 99999999999999999987766543 488999999999999999999998
Q ss_pred cCCceeEEEEecceeeeeccccccCCCceEEecCccchh-hhccccCCc---eEEEecceeeeeccccccc-ccccc---
Q 003178 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLL-DHIENKSGL---SVRLMGLKMLVLDEADHLL-DLGFR--- 552 (842)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl-~~L~~~~~~---~~~L~~l~~lVlDEAh~ll-d~gf~--- 552 (842)
.. |+.|.+++++.........+ .|+|+++|...|- +.|...... ......+.+.||||||.++ |....
T Consensus 147 ~L-Gl~vg~i~~~~~~~~r~~~y---~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLi 222 (796)
T PRK12906 147 WL-GLTVGLNLNSMSPDEKRAAY---NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLI 222 (796)
T ss_pred hc-CCeEEEeCCCCCHHHHHHHh---cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCcee
Confidence 75 89999998876544222222 3899999998873 444432110 1123568899999999876 32110
Q ss_pred ------------cchhhhhhcccc-------------------cccceeeccc----------Ccc-----h--------
Q 003178 553 ------------KDVENIVDCLPR-------------------RRQSLLFSAT----------MPK-----E-------- 578 (842)
Q Consensus 553 ------------~~i~~Il~~l~~-------------------~~q~il~SAT----------l~~-----~-------- 578 (842)
..+..++..+.. ..+.+.++.. +++ .
T Consensus 223 isg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~ 302 (796)
T PRK12906 223 ISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHID 302 (796)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHH
Confidence 011111111110 0011111100 000 0
Q ss_pred --h----hccccceeee------ec-------------------------------------------------------
Q 003178 579 --L----VLKREHTYID------TV------------------------------------------------------- 591 (842)
Q Consensus 579 --l----~~~~~~~~i~------~v------------------------------------------------------- 591 (842)
+ .+..+..|+- .+
T Consensus 303 ~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmT 382 (796)
T PRK12906 303 QALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMT 382 (796)
T ss_pred HHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccC
Confidence 0 0000000000 00
Q ss_pred --------------ccccccccccc-----c-ccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHH
Q 003178 592 --------------GLGSVETPVKI-----K-QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLL 651 (842)
Q Consensus 592 --------------~~~~~~~~~~l-----~-~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L 651 (842)
++.....|.+. . ...++.....|...+...+.... ..+.++||||+|+..++.++..|
T Consensus 383 GTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~--~~g~pvLI~t~si~~se~ls~~L 460 (796)
T PRK12906 383 GTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERH--AKGQPVLVGTVAIESSERLSHLL 460 (796)
T ss_pred CCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCcHHHHHHHHHHH
Confidence 00000001000 0 11122334557777777775543 35679999999999999999999
Q ss_pred HHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCC---CCcc-----eeEEecCCCChHHHHHHhhcCC
Q 003178 652 REMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDY---PDVT-----SVVQVGIPPDREQYIHRLGRTG 723 (842)
Q Consensus 652 ~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDi---p~V~-----~VI~yd~P~s~~~yiQRiGRaG 723 (842)
.+.++++..+|+.+.+.++..+...++.|. |+|||++|+||+|| ++|. +||+++.|.+...|.|+.||||
T Consensus 461 ~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtG 538 (796)
T PRK12906 461 DEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSG 538 (796)
T ss_pred HHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhc
Confidence 999999999999998777777777777766 99999999999999 4899 9999999999999999999999
Q ss_pred CCCCCcceeEEeccchh
Q 003178 724 REGKEGEGVLLLAPWEE 740 (842)
Q Consensus 724 R~G~~G~~i~ll~~~E~ 740 (842)
|.|.+|.+..|++..|.
T Consensus 539 RqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 539 RQGDPGSSRFYLSLEDD 555 (796)
T ss_pred cCCCCcceEEEEeccch
Confidence 99999999999988764
No 99
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=6.3e-25 Score=260.31 Aligned_cols=319 Identities=20% Similarity=0.215 Sum_probs=219.7
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.++++|.-.--.+..| -|+.++||+|||+++.+|++-..+... .+-|++||..||.|.++++..++.
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~G~-----------~V~IvTpn~yLA~rd~e~~~~l~~ 147 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALTGK-----------GVHVVTVNDYLAKRDAEWMGPLYE 147 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHcCC-----------CEEEEecCHHHHHHHHHHHHHHHh
Confidence 4777887666555555 489999999999999999964333221 266999999999999999999987
Q ss_pred cCCceeEEEEecceeeeeccccccCCCceEEecCccch-hhhccccCCc---eEEEecceeeeeccccccc-ccccc---
Q 003178 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGL---SVRLMGLKMLVLDEADHLL-DLGFR--- 552 (842)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrL-l~~L~~~~~~---~~~L~~l~~lVlDEAh~ll-d~gf~--- 552 (842)
.. ++.+.+++|+.+.......+ .++|+|+||++| .++|...... ...+..+.++||||||.|+ |....
T Consensus 148 ~L-Glsv~~i~~~~~~~er~~~y---~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLi 223 (830)
T PRK12904 148 FL-GLSVGVILSGMSPEERREAY---AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLI 223 (830)
T ss_pred hc-CCeEEEEcCCCCHHHHHHhc---CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCcee
Confidence 65 89999999987765443333 289999999999 8888765321 1235689999999999976 32111
Q ss_pred ------------cchhhhhhcccc--------cccceeec----------------------------------------
Q 003178 553 ------------KDVENIVDCLPR--------RRQSLLFS---------------------------------------- 572 (842)
Q Consensus 553 ------------~~i~~Il~~l~~--------~~q~il~S---------------------------------------- 572 (842)
..+..++..+.. ..+.+.++
T Consensus 224 iSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~ 303 (830)
T PRK12904 224 ISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKR 303 (830)
T ss_pred eECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 111112222211 01111111
Q ss_pred ---------------------------------------------------------------------ccCcchhhccc
Q 003178 573 ---------------------------------------------------------------------ATMPKELVLKR 583 (842)
Q Consensus 573 ---------------------------------------------------------------------ATl~~~l~~~~ 583 (842)
.|...+.....
T Consensus 304 d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~ 383 (830)
T PRK12904 304 DVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFR 383 (830)
T ss_pred CCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHH
Confidence 11100000000
Q ss_pred cceeeeeccccccccccccc-ccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHh
Q 003178 584 EHTYIDTVGLGSVETPVKIK-QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMY 662 (842)
Q Consensus 584 ~~~~i~~v~~~~~~~~~~l~-~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lh 662 (842)
...-++.+.+++........ ...++.....|+..+...+.... ..+.++||||+|+..++.++..|.+.++++..||
T Consensus 384 ~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~--~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLn 461 (830)
T PRK12904 384 EIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERH--KKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLN 461 (830)
T ss_pred HHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHCCCceEecc
Confidence 00000000000000000000 11223344567788877776543 2456999999999999999999999999999999
Q ss_pred hcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCc--------------------------------------ceeE
Q 003178 663 SRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDV--------------------------------------TSVV 704 (842)
Q Consensus 663 g~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V--------------------------------------~~VI 704 (842)
+. +.+|...+..|+.+...|+||||+|+||+||+-= =+||
T Consensus 462 ak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVi 539 (830)
T PRK12904 462 AK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVI 539 (830)
T ss_pred Cc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEE
Confidence 96 7899999999999999999999999999999642 2688
Q ss_pred EecCCCChHHHHHHhhcCCCCCCCcceeEEeccchh
Q 003178 705 QVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 740 (842)
Q Consensus 705 ~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~ 740 (842)
-...|.|..---|-.|||||-|.+|.+-.|++-.|.
T Consensus 540 gTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 540 GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred ecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 888899999999999999999999999999986553
No 100
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=6.7e-25 Score=244.86 Aligned_cols=315 Identities=18% Similarity=0.202 Sum_probs=220.7
Q ss_pred ceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH
Q 003178 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (842)
Q Consensus 398 g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~ 477 (842)
.+.....++.+.+..|..++-|||.+.||||||. ++|.+ |+..+.... | .+-+..|.|..|..++.++..
T Consensus 353 q~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~Qy--L~edGY~~~-----G-mIGcTQPRRvAAiSVAkrVa~ 422 (1042)
T KOG0924|consen 353 QYLPVFACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQY--LYEDGYADN-----G-MIGCTQPRRVAAISVAKRVAE 422 (1042)
T ss_pred hhcchHHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHH--HHhcccccC-----C-eeeecCchHHHHHHHHHHHHH
Confidence 3444555677777788889999999999999999 66654 666554322 2 466889999999999998887
Q ss_pred hhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccccc-ccccccchh
Q 003178 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL-DLGFRKDVE 556 (842)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~ll-d~gf~~~i~ 556 (842)
.++...|-.|.+.+- ........+.|-++|.|.|++..-.+ ..|.++++||+||||.-. +.+..--+.
T Consensus 423 EM~~~lG~~VGYsIR-------FEdvT~~~T~IkymTDGiLLrEsL~d----~~L~kYSviImDEAHERslNtDilfGll 491 (1042)
T KOG0924|consen 423 EMGVTLGDTVGYSIR-------FEDVTSEDTKIKYMTDGILLRESLKD----RDLDKYSVIIMDEAHERSLNTDILFGLL 491 (1042)
T ss_pred HhCCccccccceEEE-------eeecCCCceeEEEeccchHHHHHhhh----hhhhheeEEEechhhhcccchHHHHHHH
Confidence 764433333332221 11122234689999999999765443 347789999999999853 211110111
Q ss_pred hhhhcccccccceeecccCcchhhccccceeeeecccccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEE
Q 003178 557 NIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIV 636 (842)
Q Consensus 557 ~Il~~l~~~~q~il~SATl~~~l~~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIV 636 (842)
+.+-.-..+.++|.+|||+...-... .|-++..+........+...|...+.++.......-...+....+.+.+||
T Consensus 492 k~~larRrdlKliVtSATm~a~kf~n---fFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilI 568 (1042)
T KOG0924|consen 492 KKVLARRRDLKLIVTSATMDAQKFSN---FFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILI 568 (1042)
T ss_pred HHHHHhhccceEEEeeccccHHHHHH---HhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEE
Confidence 11122234678999999997652111 111122222223334455556666667666655444444444557789999
Q ss_pred EecchhHHHHHHHHHHHH----------hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEe
Q 003178 637 FCSTGMVTSLLYLLLREM----------KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQV 706 (842)
Q Consensus 637 F~~s~~~~~~l~~~L~~~----------~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~y 706 (842)
|.+.++.++-.+..+... ++.|..+|+.|++..+.++++.-..|..+++|||++|+..|.||++.+||..
T Consensus 569 fmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~ 648 (1042)
T KOG0924|consen 569 FMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDT 648 (1042)
T ss_pred ecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEec
Confidence 999988777666655432 4678999999999999999999999999999999999999999999999975
Q ss_pred cC------------------CCChHHHHHHhhcCCCCCCCcceeEEecc
Q 003178 707 GI------------------PPDREQYIHRLGRTGREGKEGEGVLLLAP 737 (842)
Q Consensus 707 d~------------------P~s~~~yiQRiGRaGR~G~~G~~i~ll~~ 737 (842)
+. |.+.+.-.||+|||||.| +|.||.+|+.
T Consensus 649 Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 649 GYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred CceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 53 678888899999999998 9999999986
No 101
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=1.5e-23 Score=251.28 Aligned_cols=319 Identities=18% Similarity=0.189 Sum_probs=236.1
Q ss_pred CchhHhhhc-ccceeeeeehhhhhhhhhhc----C--cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEE
Q 003178 387 SPLTIKALT-AAGYIQMTRVQEATLSACLE----G--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (842)
Q Consensus 387 ~~~l~~~L~-~~g~~~~t~iQ~~aI~~il~----g--~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~L 459 (842)
+......+. .++|. -|+=|..||..+.. + .|-+|||.-|.|||-+++=+++..++..+ +|.
T Consensus 580 d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GK-----------QVA 647 (1139)
T COG1197 580 DTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGK-----------QVA 647 (1139)
T ss_pred ChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCC-----------eEE
Confidence 334444444 34554 68999999998875 3 48899999999999997777776665442 699
Q ss_pred EeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeee---eccccccCCCceEEecCccchhhhccccCCceEEEecce
Q 003178 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK---VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (842)
Q Consensus 460 IL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~---~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~ 536 (842)
|||||--||+|.++.|++.+..+ ++++..+.--.+.+ .-...+..+..||||+|. .+|..+ ..++++.
T Consensus 648 vLVPTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH----rLL~kd----v~FkdLG 718 (1139)
T COG1197 648 VLVPTTLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH----RLLSKD----VKFKDLG 718 (1139)
T ss_pred EEcccHHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEech----HhhCCC----cEEecCC
Confidence 99999999999999999999876 46666654433322 223456678899999995 444433 5678999
Q ss_pred eeeecccccccccccccchhhhhhcccccccceeecccCcch-hhccccceeeeecccccccccccccccccccCchhhH
Q 003178 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE-LVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHF 615 (842)
Q Consensus 537 ~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~-l~~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~ 615 (842)
+|||||-|+ |+-.-..-++.+..+.-++-+|||+-+. +.+.. .-+....+...+...++....++.+.+..
T Consensus 719 LlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm--~GiRdlSvI~TPP~~R~pV~T~V~~~d~~- 790 (1139)
T COG1197 719 LLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSL--SGIRDLSVIATPPEDRLPVKTFVSEYDDL- 790 (1139)
T ss_pred eEEEechhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHH--hcchhhhhccCCCCCCcceEEEEecCChH-
Confidence 999999999 6666667777778888899999997554 21110 01111111122222233333333333221
Q ss_pred HHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH--hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccccc
Q 003178 616 QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSAR 693 (842)
Q Consensus 616 ~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ar 693 (842)
.+-..+++++ ..++++-..+|..+..+.++..|+++ ...+...||.|+..+-+.++..|.+|+.+|||||.+++.
T Consensus 791 ~ireAI~REl---~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEt 867 (1139)
T COG1197 791 LIREAILREL---LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIET 867 (1139)
T ss_pred HHHHHHHHHH---hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeec
Confidence 1112233333 25778888899999999999999987 567889999999999999999999999999999999999
Q ss_pred CCCCCCcceeEEecCC-CChHHHHHHhhcCCCCCCCcceeEEecc
Q 003178 694 GMDYPDVTSVVQVGIP-PDREQYIHRLGRTGREGKEGEGVLLLAP 737 (842)
Q Consensus 694 GlDip~V~~VI~yd~P-~s~~~yiQRiGRaGR~G~~G~~i~ll~~ 737 (842)
|||||+++.+|..+.. ...++..|.-||.||..+.+.||+++.+
T Consensus 868 GIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 868 GIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred CcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecC
Confidence 9999999999977665 4678999999999999999999999986
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.90 E-value=9.6e-23 Score=213.71 Aligned_cols=297 Identities=19% Similarity=0.262 Sum_probs=208.3
Q ss_pred eeeehhhhhhhhhh----cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 401 QMTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 401 ~~t~iQ~~aI~~il----~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
++++.|+.+-..++ +..+++|.|-||+|||.. +.+.++..++.+ .++.|.+|....+..++.+++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~G----------~~vciASPRvDVclEl~~Rlk 165 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQG----------GRVCIASPRVDVCLELYPRLK 165 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhcC----------CeEEEecCcccchHHHHHHHH
Confidence 68999998765544 468999999999999996 677777777653 368999999999999999998
Q ss_pred HhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchh
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~ 556 (842)
..+. +..+.+++|+..... ...++|||.-.|+++-. .++++||||+|...-.. ...+.
T Consensus 166 ~aF~---~~~I~~Lyg~S~~~f--------r~plvVaTtHQLlrFk~----------aFD~liIDEVDAFP~~~-d~~L~ 223 (441)
T COG4098 166 QAFS---NCDIDLLYGDSDSYF--------RAPLVVATTHQLLRFKQ----------AFDLLIIDEVDAFPFSD-DQSLQ 223 (441)
T ss_pred Hhhc---cCCeeeEecCCchhc--------cccEEEEehHHHHHHHh----------hccEEEEeccccccccC-CHHHH
Confidence 8865 456788888876432 15899999888776532 46889999999864221 11111
Q ss_pred -hhhhcccccccceeecccCcchhhccccceeeeeccc--ccccccccccccccccCchhhH------HHHHHHHhhhhc
Q 003178 557 -NIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGL--GSVETPVKIKQSCLVAPHELHF------QILHHLLKEHIL 627 (842)
Q Consensus 557 -~Il~~l~~~~q~il~SATl~~~l~~~~~~~~i~~v~~--~~~~~~~~l~~~~~~~~~~~k~------~~L~~lL~~~~~ 627 (842)
.+-+...+..-+|.+|||.++.+.-......+..+.+ .-...|..+..++...+-..++ ..|...|+.+.
T Consensus 224 ~Av~~ark~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~- 302 (441)
T COG4098 224 YAVKKARKKEGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQR- 302 (441)
T ss_pred HHHHHhhcccCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHH-
Confidence 2223344456789999999987543222111211111 1122333333333333333332 24566666654
Q ss_pred CCCCceEEEEecchhHHHHHHHHHHHH--hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEE
Q 003178 628 GTPDYKVIVFCSTGMVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ 705 (842)
Q Consensus 628 ~~~~~kiIVF~~s~~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~ 705 (842)
..+.+++||+++....+.++..|+.. ...+...|+. ...|.+..+.|++|+..+||+|.+++||+.+|+|+++|.
T Consensus 303 -~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl 379 (441)
T COG4098 303 -KTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL 379 (441)
T ss_pred -hcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe
Confidence 35679999999999999999999543 2345677776 456889999999999999999999999999999998664
Q ss_pred ecC--CCChHHHHHHhhcCCCCCC--CcceeEE
Q 003178 706 VGI--PPDREQYIHRLGRTGREGK--EGEGVLL 734 (842)
Q Consensus 706 yd~--P~s~~~yiQRiGRaGR~G~--~G~~i~l 734 (842)
-.- -.+.+..+|.+||+||.-. .|..+.|
T Consensus 380 gaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 380 GAEHRVFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred cCCcccccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 332 2578899999999999753 3544444
No 103
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.90 E-value=3.1e-23 Score=257.35 Aligned_cols=310 Identities=19% Similarity=0.230 Sum_probs=192.3
Q ss_pred eeeehhhhhhhhhhc-----CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHH
Q 003178 401 QMTRVQEATLSACLE-----GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~-----g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l 475 (842)
.++++|.+||..+.. .+.++++++||||||++ .+.++..+++... ..++|||+|+++|+.|+.+.+
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~t-ai~li~~L~~~~~--------~~rVLfLvDR~~L~~Qa~~~F 483 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRT-AIALMYRLLKAKR--------FRRILFLVDRSALGEQAEDAF 483 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHH-HHHHHHHHHhcCc--------cCeEEEEecHHHHHHHHHHHH
Confidence 489999999987753 36789999999999987 4556666655432 127999999999999999998
Q ss_pred HHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccC-C-ceEEEecceeeeecccccccc-----
Q 003178 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS-G-LSVRLMGLKMLVLDEADHLLD----- 548 (842)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~-~-~~~~L~~l~~lVlDEAh~lld----- 548 (842)
..+.... ...+..+++..... .........|+|+|...|...+.... . ....+..+++||+||||+-..
T Consensus 484 ~~~~~~~-~~~~~~i~~i~~L~---~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~ 559 (1123)
T PRK11448 484 KDTKIEG-DQTFASIYDIKGLE---DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEM 559 (1123)
T ss_pred Hhccccc-ccchhhhhchhhhh---hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccc
Confidence 8763211 11111111111100 01112236899999999876543211 0 012346788999999999531
Q ss_pred ----ccc------ccchhhhhhcccccccceeecccCcchhh-ccccce----eeeeccccccc---cccccc-------
Q 003178 549 ----LGF------RKDVENIVDCLPRRRQSLLFSATMPKELV-LKREHT----YIDTVGLGSVE---TPVKIK------- 603 (842)
Q Consensus 549 ----~gf------~~~i~~Il~~l~~~~q~il~SATl~~~l~-~~~~~~----~i~~v~~~~~~---~~~~l~------- 603 (842)
.+| ...+..++.+. +...|+||||+..... +...+. +...+..+..- .|..+.
T Consensus 560 ~~~~~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~g 637 (1123)
T PRK11448 560 SEGELQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEG 637 (1123)
T ss_pred ccchhccchhhhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccc
Confidence 111 24556666654 2467999999854310 000000 00000000000 000000
Q ss_pred -------------c---cc--cccCc---------------hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHH
Q 003178 604 -------------Q---SC--LVAPH---------------ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLL 650 (842)
Q Consensus 604 -------------~---~~--~~~~~---------------~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~ 650 (842)
. .+ ...+. ......+..-+..++....++|+||||.++.+|+.++..
T Consensus 638 i~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~ 717 (1123)
T PRK11448 638 IHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRL 717 (1123)
T ss_pred ccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHH
Confidence 0 00 00000 001111222222333333357999999999999999998
Q ss_pred HHHHh------h---hHHHHhhcCcchhhhhhhHHHhhcce-EEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhh
Q 003178 651 LREMK------M---NVREMYSRKPQLYRDRISEEFRASKR-LILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLG 720 (842)
Q Consensus 651 L~~~~------~---~v~~lhg~~~~~~R~~v~~~F~~g~~-~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiG 720 (842)
|++.. + .+..+||..+ ++..+++.|+++.. .|||+++++.+|+|+|.|.+||.+.++.|...|+||+|
T Consensus 718 L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIG 795 (1123)
T PRK11448 718 LKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLG 795 (1123)
T ss_pred HHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHh
Confidence 87641 1 2345777764 56789999999886 69999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003178 721 RTGREGK 727 (842)
Q Consensus 721 RaGR~G~ 727 (842)
|+.|.-.
T Consensus 796 RgtR~~~ 802 (1123)
T PRK11448 796 RATRLCP 802 (1123)
T ss_pred hhccCCc
Confidence 9999753
No 104
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=7e-23 Score=242.33 Aligned_cols=319 Identities=18% Similarity=0.224 Sum_probs=215.3
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.++++|. |-.+.-++--|+.++||.|||++|.+|++..++... .+.||+|+++||.|.++++..++.
T Consensus 82 ~~ydVQl--iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g~-----------~VhIvT~ndyLA~RD~e~m~~l~~ 148 (908)
T PRK13107 82 RHFDVQL--LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGK-----------GVHVITVNDYLARRDAENNRPLFE 148 (908)
T ss_pred CcCchHH--hcchHhcCCccccccCCCCchHHHHHHHHHHHhcCC-----------CEEEEeCCHHHHHHHHHHHHHHHH
Confidence 3566674 443333455689999999999999999987765432 389999999999999999999998
Q ss_pred cCCceeEEEEecceeeeeccccccCCCceEEecCccch-hhhccccCCce---EEEecceeeeecccccccc-cccccc-
Q 003178 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGLS---VRLMGLKMLVLDEADHLLD-LGFRKD- 554 (842)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrL-l~~L~~~~~~~---~~L~~l~~lVlDEAh~lld-~gf~~~- 554 (842)
++ |++|.+++++.+... ....-.++|+++||+.| .++|..+.... .-...+.++||||||.++. ....+.
T Consensus 149 ~l-Glsv~~i~~~~~~~~---r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLI 224 (908)
T PRK13107 149 FL-GLTVGINVAGLGQQE---KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLI 224 (908)
T ss_pred hc-CCeEEEecCCCCHHH---HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCcee
Confidence 75 999999999876532 22222489999999999 88887652211 1236789999999999763 211110
Q ss_pred --------------hhhhhhccc-------------------ccccceeecc--------cC---c-----ch-------
Q 003178 555 --------------VENIVDCLP-------------------RRRQSLLFSA--------TM---P-----KE------- 578 (842)
Q Consensus 555 --------------i~~Il~~l~-------------------~~~q~il~SA--------Tl---~-----~~------- 578 (842)
+..++..+. ...+.+-+|- .+ . ..
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~ 304 (908)
T PRK13107 225 ISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANI 304 (908)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhh
Confidence 011111110 0011111110 00 0 00
Q ss_pred ---------h----hccccceeee------ecc-----------------------------------------------
Q 003178 579 ---------L----VLKREHTYID------TVG----------------------------------------------- 592 (842)
Q Consensus 579 ---------l----~~~~~~~~i~------~v~----------------------------------------------- 592 (842)
+ .+..+..|+- .+.
T Consensus 305 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y 384 (908)
T PRK13107 305 SLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQY 384 (908)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhh
Confidence 0 0000000000 000
Q ss_pred ----------------------ccccccccc-----cc-ccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHH
Q 003178 593 ----------------------LGSVETPVK-----IK-QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVT 644 (842)
Q Consensus 593 ----------------------~~~~~~~~~-----l~-~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~ 644 (842)
+..+..|.+ .. ...++.....|+..+..-+.... ..+.++||||.|...+
T Consensus 385 ~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~--~~GrpVLV~t~sv~~s 462 (908)
T PRK13107 385 EKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCR--ERGQPVLVGTVSIEQS 462 (908)
T ss_pred hHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHH--HcCCCEEEEeCcHHHH
Confidence 000000000 00 01122233556666666665544 3567999999999999
Q ss_pred HHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCC-------------------------
Q 003178 645 SLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPD------------------------- 699 (842)
Q Consensus 645 ~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~------------------------- 699 (842)
+.++.+|...++.+..+|+.+++.++..+.+.|+.|. |+|||++|+||+||.=
T Consensus 463 e~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~ 540 (908)
T PRK13107 463 ELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKAD 540 (908)
T ss_pred HHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999 9999999999999951
Q ss_pred ------------cceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchh
Q 003178 700 ------------VTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 740 (842)
Q Consensus 700 ------------V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~ 740 (842)
==+||-...+.|..---|-.|||||-|.+|.+-.|++-.|.
T Consensus 541 ~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 541 WQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 12688888898988889999999999999999999986554
No 105
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.89 E-value=5.4e-23 Score=244.17 Aligned_cols=319 Identities=18% Similarity=0.177 Sum_probs=224.3
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
..+..+.+.|.++.+++.++|+|.||+|||+ ++|.+ ++....... ....+++..|+|--|..+++++...-.
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTT--QvpQf--iLd~~~~~~----~~~~IicTQPRRIsAIsvAeRVa~ER~ 244 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTT--QVPQF--ILDEAIESG----AACNIICTQPRRISAISVAERVAKERG 244 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchh--hhhHH--HHHHHHhcC----CCCeEEecCCchHHHHHHHHHHHHHhc
Confidence 4566788899999999999999999999999 66654 333321111 234689999999999999988876654
Q ss_pred cCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccccc-ccccccchhhhh
Q 003178 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL-DLGFRKDVENIV 559 (842)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~ll-d~gf~~~i~~Il 559 (842)
...+-.|..-++..+. ......+++||.|.|++.|..+ ..+.++..||+||+|.-. +.+|.-.+.+.+
T Consensus 245 ~~~g~~VGYqvrl~~~-------~s~~t~L~fcTtGvLLr~L~~~----~~l~~vthiivDEVHER~i~~DflLi~lk~l 313 (924)
T KOG0920|consen 245 ESLGEEVGYQVRLESK-------RSRETRLLFCTTGVLLRRLQSD----PTLSGVTHIIVDEVHERSINTDFLLILLKDL 313 (924)
T ss_pred cccCCeeeEEEeeecc-------cCCceeEEEecHHHHHHHhccC----cccccCceeeeeeEEEccCCcccHHHHHHHH
Confidence 4444344433332221 2223789999999999999875 457899999999999864 344554444444
Q ss_pred hcccccccceeecccCcchhhcc--ccceeeeecccc--------------ccccccccccc------------ccccCc
Q 003178 560 DCLPRRRQSLLFSATMPKELVLK--REHTYIDTVGLG--------------SVETPVKIKQS------------CLVAPH 611 (842)
Q Consensus 560 ~~l~~~~q~il~SATl~~~l~~~--~~~~~i~~v~~~--------------~~~~~~~l~~~------------~~~~~~ 611 (842)
-...++.++|+||||+..+..-. .....+...+.. .........+. ......
T Consensus 314 L~~~p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (924)
T KOG0920|consen 314 LPRNPDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEP 393 (924)
T ss_pred hhhCCCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccc
Confidence 44557899999999987663211 011111100000 00000000000 011112
Q ss_pred hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH-------hhhHHHHhhcCcchhhhhhhHHHhhcceEE
Q 003178 612 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-------KMNVREMYSRKPQLYRDRISEEFRASKRLI 684 (842)
Q Consensus 612 ~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~-------~~~v~~lhg~~~~~~R~~v~~~F~~g~~~V 684 (842)
+..+.++..++.........+.||||.++..++..++..|... .+-+..+|+.|+..++..++.....|..+|
T Consensus 394 ~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKI 473 (924)
T KOG0920|consen 394 EIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKI 473 (924)
T ss_pred cccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchh
Confidence 2345666667766666666789999999999999999999752 356889999999999999999999999999
Q ss_pred EEeccccccCCCCCCcceeEEe--------cCC----------CChHHHHHHhhcCCCCCCCcceeEEeccch
Q 003178 685 LVTSDVSARGMDYPDVTSVVQV--------GIP----------PDREQYIHRLGRTGREGKEGEGVLLLAPWE 739 (842)
Q Consensus 685 LVaTdv~arGlDip~V~~VI~y--------d~P----------~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E 739 (842)
+++|++|+.+|.|++|-+||+. |+- .+.+.-.||.|||||.- +|.||.+++...
T Consensus 474 IlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~-~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 474 ILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR-PGICYHLYTRSR 545 (924)
T ss_pred hhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc-CCeeEEeechhh
Confidence 9999999999999999999964 432 25566689999999975 899999998743
No 106
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.88 E-value=6.9e-23 Score=238.42 Aligned_cols=334 Identities=21% Similarity=0.260 Sum_probs=232.8
Q ss_pred hHhhhcccceeeeeehhhhhh--hhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhH
Q 003178 390 TIKALTAAGYIQMTRVQEATL--SACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (842)
Q Consensus 390 l~~~L~~~g~~~~t~iQ~~aI--~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReL 467 (842)
..-..+..|...++.+|.+++ +.++.++++|+.+||+.|||++.-+-++..++-... .++.+.|....
T Consensus 212 ~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr----------~~llilp~vsi 281 (1008)
T KOG0950|consen 212 SHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR----------NVLLILPYVSI 281 (1008)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh----------ceeEecceeeh
Confidence 333445679999999999987 568889999999999999999998888877766543 48899998888
Q ss_pred HHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccccc
Q 003178 468 ASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547 (842)
Q Consensus 468 A~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~ll 547 (842)
+..-...+..++... |+.+...+|....... ...-.+.|||-++-..++..--. .-++..+.+||+||.|.+.
T Consensus 282 v~Ek~~~l~~~~~~~-G~~ve~y~g~~~p~~~-----~k~~sv~i~tiEkanslin~lie-~g~~~~~g~vvVdElhmi~ 354 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDL-GFPVEEYAGRFPPEKR-----RKRESVAIATIEKANSLINSLIE-QGRLDFLGMVVVDELHMIG 354 (1008)
T ss_pred hHHHHhhhhhhcccc-CCcchhhcccCCCCCc-----ccceeeeeeehHhhHhHHHHHHh-cCCccccCcEEEeeeeeee
Confidence 877777777766543 7777777665443221 11258999999986544322100 1235678999999999999
Q ss_pred ccccccchhhhhhc-----ccccccceeecccCcchhhccccceeeeecccccccccccccccccc----cCchhhHHHH
Q 003178 548 DLGFRKDVENIVDC-----LPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKIKQSCLV----APHELHFQIL 618 (842)
Q Consensus 548 d~gf~~~i~~Il~~-----l~~~~q~il~SATl~~~l~~~~~~~~i~~v~~~~~~~~~~l~~~~~~----~~~~~k~~~L 618 (842)
+.+....++.++.. .....|+|+||||+++.-.+.. +.+..-......|+.+..+..+ .... +...+
T Consensus 355 d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~---~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~-r~~~l 430 (1008)
T KOG0950|consen 355 DKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQD---WLDAFVYTTRFRPVPLKEYIKPGSLIYESS-RNKVL 430 (1008)
T ss_pred ccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHH---HhhhhheecccCcccchhccCCCcccccch-hhHHH
Confidence 99988888777653 2334679999999998732211 0000001111223333222211 1111 22222
Q ss_pred HHHH-------------------hhhhcCCCCceEEEEecchhHHHHHHHHHHHH-------------------------
Q 003178 619 HHLL-------------------KEHILGTPDYKVIVFCSTGMVTSLLYLLLREM------------------------- 654 (842)
Q Consensus 619 ~~lL-------------------~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~------------------------- 654 (842)
..+- .+.. ..+..+||||++++.|+.++..+...
T Consensus 431 r~ia~l~~~~~g~~dpD~~v~L~tet~--~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~ 508 (1008)
T KOG0950|consen 431 REIANLYSSNLGDEDPDHLVGLCTETA--PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRR 508 (1008)
T ss_pred HHhhhhhhhhcccCCCcceeeehhhhh--hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhc
Confidence 2222 1111 12346999999999999988665421
Q ss_pred -------------hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEE---ec-CCCChHHHHH
Q 003178 655 -------------KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ---VG-IPPDREQYIH 717 (842)
Q Consensus 655 -------------~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~---yd-~P~s~~~yiQ 717 (842)
.+.+.++|++++..+|..+...|++|...|++||++++.|+|.|..+++|- ++ ...+.-+|.|
T Consensus 509 ~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQ 588 (1008)
T KOG0950|consen 509 IPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQ 588 (1008)
T ss_pred CCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHh
Confidence 135889999999999999999999999999999999999999999999984 33 2467889999
Q ss_pred HhhcCCCCC--CCcceeEEeccchhhhhccC
Q 003178 718 RLGRTGREG--KEGEGVLLLAPWEEYFLDDL 746 (842)
Q Consensus 718 RiGRaGR~G--~~G~~i~ll~~~E~~~l~~L 746 (842)
|+|||||+| ..|.+++++.+.|......+
T Consensus 589 M~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 589 MVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred hhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 999999998 46999999999886433333
No 107
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.88 E-value=1.5e-23 Score=208.62 Aligned_cols=163 Identities=37% Similarity=0.599 Sum_probs=134.7
Q ss_pred eehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcC
Q 003178 403 TRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482 (842)
Q Consensus 403 t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~ 482 (842)
||+|.++++.+.+++++++.||||+|||++|++|+++.+.+.. . .++||++|+++|+.|+++.+..++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~-~--------~~~lii~P~~~l~~q~~~~~~~~~~~- 70 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK-D--------ARVLIIVPTRALAEQQFERLRKFFSN- 70 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS-S--------SEEEEEESSHHHHHHHHHHHHHHTTT-
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC-C--------ceEEEEeecccccccccccccccccc-
Confidence 6899999999999999999999999999999999998887652 1 16999999999999999999999876
Q ss_pred CceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhhcc
Q 003178 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562 (842)
Q Consensus 483 ~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l 562 (842)
.++.+..++|+............+.++|+|+||++|.+.+.... ..+.++++||+||+|.+.++.+...+..|+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~---~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~ 147 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK---INISRLSLIVIDEAHHLSDETFRAMLKSILRRL 147 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS---STGTTESEEEEETHHHHHHTTHHHHHHHHHHHS
T ss_pred cccccccccccccccccccccccccccccccCcchhhccccccc---cccccceeeccCcccccccccHHHHHHHHHHHh
Confidence 46788888888775423322224458999999999999987632 234569999999999999988888888888877
Q ss_pred cc--cccceeecccCcch
Q 003178 563 PR--RRQSLLFSATMPKE 578 (842)
Q Consensus 563 ~~--~~q~il~SATl~~~ 578 (842)
.. +.|++++|||++..
T Consensus 148 ~~~~~~~~i~~SAT~~~~ 165 (169)
T PF00270_consen 148 KRFKNIQIILLSATLPSN 165 (169)
T ss_dssp HTTTTSEEEEEESSSTHH
T ss_pred cCCCCCcEEEEeeCCChh
Confidence 43 58899999999843
No 108
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.86 E-value=1.5e-21 Score=238.49 Aligned_cols=311 Identities=14% Similarity=0.174 Sum_probs=208.1
Q ss_pred eeeehhhhhhhhhh----cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 401 QMTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 401 ~~t~iQ~~aI~~il----~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
.|.++|.+++..++ +|.+.|++..+|.|||+. .+.++..+...... . ..+|||||. .|..||.+++.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQ-aIalL~~L~~~~~~------~-gp~LIVvP~-SlL~nW~~Ei~ 239 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQ-TISLLGYLHEYRGI------T-GPHMVVAPK-STLGNWMNEIR 239 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHH-HHHHHHHHHHhcCC------C-CCEEEEeCh-HHHHHHHHHHH
Confidence 68999999998875 477899999999999997 34455444432211 1 137999996 56688999998
Q ss_pred HhhhcCCceeEEEEecceeeeecc--ccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccc
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKVDQ--RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~--~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~ 554 (842)
+++ +.+.+..++|........ ..+....++|+|+|++.+...... +.-.++++|||||||++-+.. ..
T Consensus 240 kw~---p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~-----L~k~~W~~VIvDEAHrIKN~~--Sk 309 (1033)
T PLN03142 240 RFC---PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA-----LKRFSWRYIIIDEAHRIKNEN--SL 309 (1033)
T ss_pred HHC---CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH-----hccCCCCEEEEcCccccCCHH--HH
Confidence 875 456677777754322111 112234579999999988654321 111257899999999987642 23
Q ss_pred hhhhhhcccccccceeecccCcch----h----hccccce----------------------------eeeeccccc---
Q 003178 555 VENIVDCLPRRRQSLLFSATMPKE----L----VLKREHT----------------------------YIDTVGLGS--- 595 (842)
Q Consensus 555 i~~Il~~l~~~~q~il~SATl~~~----l----~~~~~~~----------------------------~i~~v~~~~--- 595 (842)
+..++..+.. ...+++|+|+-.+ + .+..... .+..+-+..
T Consensus 310 lskalr~L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~Ks 388 (1033)
T PLN03142 310 LSKTMRLFST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKS 388 (1033)
T ss_pred HHHHHHHhhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHH
Confidence 3444444432 3457889996432 0 0000000 000000000
Q ss_pred ---cccccccc-----------------------------------------------cccc---------------ccC
Q 003178 596 ---VETPVKIK-----------------------------------------------QSCL---------------VAP 610 (842)
Q Consensus 596 ---~~~~~~l~-----------------------------------------------~~~~---------------~~~ 610 (842)
...|.... +.++ .+.
T Consensus 389 dV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie 468 (1033)
T PLN03142 389 DVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVE 468 (1033)
T ss_pred HHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhh
Confidence 00000000 0000 001
Q ss_pred chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhc---ceEEEEe
Q 003178 611 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRAS---KRLILVT 687 (842)
Q Consensus 611 ~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g---~~~VLVa 687 (842)
...|+..|..+|.... ..+.++|||+....+...|..+|...++.++.+||.++..+|..+++.|... ...+|++
T Consensus 469 ~SgKl~lLdkLL~~Lk--~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLS 546 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLK--ERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLS 546 (1033)
T ss_pred hhhHHHHHHHHHHHHH--hcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEe
Confidence 1234555555555443 3567999999999999999999999999999999999999999999999753 3467899
Q ss_pred ccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeE
Q 003178 688 SDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVL 733 (842)
Q Consensus 688 Tdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ 733 (842)
|.+++.|||+..+++||+||+|+++..+.|++||+.|.|+...+.+
T Consensus 547 TrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~V 592 (1033)
T PLN03142 547 TRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQV 592 (1033)
T ss_pred ccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEE
Confidence 9999999999999999999999999999999999999997765443
No 109
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.84 E-value=3.2e-20 Score=220.49 Aligned_cols=131 Identities=20% Similarity=0.285 Sum_probs=115.0
Q ss_pred hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccc
Q 003178 612 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 691 (842)
Q Consensus 612 ~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ 691 (842)
...+..+...+.... ..+.++||||+|+..++.++..|...++.+..+||++++.+|..++..|+.|++.|||||+++
T Consensus 425 ~~qi~~Ll~eI~~~~--~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L 502 (655)
T TIGR00631 425 DGQVDDLLSEIRQRV--ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLL 502 (655)
T ss_pred cchHHHHHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChh
Confidence 345556666665544 346799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcceeEEec-----CCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhcc
Q 003178 692 ARGMDYPDVTSVVQVG-----IPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDD 745 (842)
Q Consensus 692 arGlDip~V~~VI~yd-----~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~ 745 (842)
++|+|+|++++||++| .|.+..+|+||+|||||. ..|.+++|+...+..+.+.
T Consensus 503 ~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~a 560 (655)
T TIGR00631 503 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKA 560 (655)
T ss_pred cCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHH
Confidence 9999999999999988 799999999999999997 5899999998765444433
No 110
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.1e-20 Score=205.28 Aligned_cols=327 Identities=17% Similarity=0.153 Sum_probs=224.5
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
...|...+.++.-.+.|++..-......+.+-+..+.+++-++++|.||||||. ++|.+-.-+..... ..
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~~~--------~~ 93 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELSHL--------TG 93 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHhhc--------cc
Confidence 567899999999999888765555566667777888889999999999999999 67765322221110 24
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
+....|.|..|.+++.++.....-..|-.|+..+ ....-....+-+-+||.|+|++...++ ..+..+.+
T Consensus 94 v~CTQprrvaamsva~RVadEMDv~lG~EVGysI-------rfEdC~~~~T~Lky~tDgmLlrEams~----p~l~~y~v 162 (699)
T KOG0925|consen 94 VACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSI-------RFEDCTSPNTLLKYCTDGMLLREAMSD----PLLGRYGV 162 (699)
T ss_pred eeecCchHHHHHHHHHHHHHHhccccchhccccc-------cccccCChhHHHHHhcchHHHHHHhhC----cccccccE
Confidence 7889999999999998877665332232332211 111111222445689999999888776 45678999
Q ss_pred eeeccccccccc-c-cccchhhhhhcccccccceeecccCcchhh--ccccceeeeecccccccccccccccccccCchh
Q 003178 538 LVLDEADHLLDL-G-FRKDVENIVDCLPRRRQSLLFSATMPKELV--LKREHTYIDTVGLGSVETPVKIKQSCLVAPHEL 613 (842)
Q Consensus 538 lVlDEAh~lld~-g-f~~~i~~Il~~l~~~~q~il~SATl~~~l~--~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~ 613 (842)
||+||||.-.-. + ....+..++..- ++.++|.+|||+...-. ...+...+.. +-...+..+|...+..+
T Consensus 163 iiLDeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~Kfq~yf~n~Pll~v------pg~~PvEi~Yt~e~erD 235 (699)
T KOG0925|consen 163 IILDEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDAEKFQRYFGNAPLLAV------PGTHPVEIFYTPEPERD 235 (699)
T ss_pred EEechhhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccchHHHHHHhCCCCeeec------CCCCceEEEecCCCChh
Confidence 999999984311 0 112233333333 47899999999865421 1112122211 11223444555556667
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH---------hhhHHHHhhcCcchhhhhhhHHHhh---c-
Q 003178 614 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM---------KMNVREMYSRKPQLYRDRISEEFRA---S- 680 (842)
Q Consensus 614 k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~---------~~~v~~lhg~~~~~~R~~v~~~F~~---g- 680 (842)
.++.....+.++......+.++||.++.++++..++.+... .+.|..+| +.++.++++.-.. |
T Consensus 236 ylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~ 311 (699)
T KOG0925|consen 236 YLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGA 311 (699)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCC
Confidence 77766666655555566889999999999999988888743 24577777 4455555554432 2
Q ss_pred -ceEEEEeccccccCCCCCCcceeEEecC------------------CCChHHHHHHhhcCCCCCCCcceeEEecc
Q 003178 681 -KRLILVTSDVSARGMDYPDVTSVVQVGI------------------PPDREQYIHRLGRTGREGKEGEGVLLLAP 737 (842)
Q Consensus 681 -~~~VLVaTdv~arGlDip~V~~VI~yd~------------------P~s~~~yiQRiGRaGR~G~~G~~i~ll~~ 737 (842)
..+|+|+|++++..+.+++|.+||.-++ |.|..+-.||.|||||. ++|+|+.+|+.
T Consensus 312 ~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte 386 (699)
T KOG0925|consen 312 YGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 386 (699)
T ss_pred ccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecH
Confidence 3689999999999999999999996443 67899999999999996 49999999985
No 111
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.82 E-value=1.6e-20 Score=227.42 Aligned_cols=323 Identities=22% Similarity=0.201 Sum_probs=196.1
Q ss_pred eeehhhhhhhhhhcC---c-ceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH
Q 003178 402 MTRVQEATLSACLEG---K-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (842)
Q Consensus 402 ~t~iQ~~aI~~il~g---~-dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~ 477 (842)
.++.|..++..++.. . .+++.||||+|||++.+++++..+..... ...+++++.|++.++.++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~-------~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIK-------LKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcccc-------ccceEEEEccHHHHHHHHHHHHHh
Confidence 477888888877753 4 78899999999999988888766554211 123799999999999999999998
Q ss_pred hhhcCCceeEEEEecceeeeec-------------cccccCCCceEEecCccchhhhccccCCceE-EEecceeeeeccc
Q 003178 478 LLKNHDGIGVLTLVGGTRFKVD-------------QRRLESDPCQILVATPGRLLDHIENKSGLSV-RLMGLKMLVLDEA 543 (842)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~-------------~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~-~L~~l~~lVlDEA 543 (842)
.+....... ....|....... ..........++++||-.+.........+.. ..-..+++||||+
T Consensus 269 ~~~~~~~~~-~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~ 347 (733)
T COG1203 269 IFGLFSVIG-KSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEV 347 (733)
T ss_pred hhccccccc-ccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccH
Confidence 765431111 101121111000 0001111234555555544442222211111 1113468999999
Q ss_pred ccccccccccchhhhhhccc-ccccceeecccCcchhhccccceeeee--cccccc----cccccccccccccCchhhH-
Q 003178 544 DHLLDLGFRKDVENIVDCLP-RRRQSLLFSATMPKELVLKREHTYIDT--VGLGSV----ETPVKIKQSCLVAPHELHF- 615 (842)
Q Consensus 544 h~lld~gf~~~i~~Il~~l~-~~~q~il~SATl~~~l~~~~~~~~i~~--v~~~~~----~~~~~l~~~~~~~~~~~k~- 615 (842)
|.+.+......+..++..+. ....+|+||||+|+.+.-.-...+... +..... .....+.+.... ......
T Consensus 348 h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~ 426 (733)
T COG1203 348 HLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERV-DVEDGPQ 426 (733)
T ss_pred HhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccch-hhhhhhh
Confidence 99876532222333333332 367899999999987421110000000 000000 000000000000 000000
Q ss_pred HHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHh----hcceEEEEecccc
Q 003178 616 QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFR----ASKRLILVTSDVS 691 (842)
Q Consensus 616 ~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~----~g~~~VLVaTdv~ 691 (842)
..+...+... ...+.+++|.|||...|..+|..|+..+..++.+||.+...+|.+.++.+. .+...|+|||+|+
T Consensus 427 ~~~~~~~~~~--~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVI 504 (733)
T COG1203 427 EELIELISEE--VKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVI 504 (733)
T ss_pred Hhhhhcchhh--hccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEE
Confidence 0111111111 135679999999999999999999988778999999999999998887654 5678999999999
Q ss_pred ccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCC--CCcceeEEeccc
Q 003178 692 ARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREG--KEGEGVLLLAPW 738 (842)
Q Consensus 692 arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G--~~G~~i~ll~~~ 738 (842)
+.|||+ +.+++|-=-. .+.+.+||+||++|.| ..|..+++....
T Consensus 505 EagvDi-dfd~mITe~a--PidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 505 EAGVDI-DFDVLITELA--PIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred EEEecc-ccCeeeecCC--CHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 999999 4777765444 4789999999999999 566666665543
No 112
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=6.2e-20 Score=218.11 Aligned_cols=126 Identities=19% Similarity=0.235 Sum_probs=112.4
Q ss_pred chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc
Q 003178 611 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 690 (842)
Q Consensus 611 ~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv 690 (842)
...|+..+...+.... ..+.++||||+|+..++.++..|+..++++..||+ .+.+|+..+..|+.+...|+||||+
T Consensus 580 ~~eK~~Ali~~I~~~~--~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 580 RREKYNAIVLKVEELQ--KKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHHh--hCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 3467777877776543 24679999999999999999999999999999997 5889999999999999999999999
Q ss_pred cccCCCCC---Ccce-----eEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchh
Q 003178 691 SARGMDYP---DVTS-----VVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 740 (842)
Q Consensus 691 ~arGlDip---~V~~-----VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~ 740 (842)
|+||+||+ +|.. ||++..|.+...|.||+|||||.|.+|.+++|++..|.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999999 6654 48999999999999999999999999999999998764
No 113
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.81 E-value=7.6e-20 Score=225.62 Aligned_cols=121 Identities=18% Similarity=0.244 Sum_probs=85.5
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHh--hhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccc
Q 003178 615 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK--MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 692 (842)
Q Consensus 615 ~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~--~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~a 692 (842)
...+...|...+.. .++++||||+|....+.++..|.... ..+..+..+.. ..|..+++.|++++..||+||+.++
T Consensus 659 ~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~ 736 (850)
T TIGR01407 659 AQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFW 736 (850)
T ss_pred HHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceee
Confidence 33455555554433 35699999999999999999997521 11222333332 5789999999999999999999999
Q ss_pred cCCCCCCcc--eeEEecCCC------------------------------ChHHHHHHhhcCCCCCCCcceeEEecc
Q 003178 693 RGMDYPDVT--SVVQVGIPP------------------------------DREQYIHRLGRTGREGKEGEGVLLLAP 737 (842)
Q Consensus 693 rGlDip~V~--~VI~yd~P~------------------------------s~~~yiQRiGRaGR~G~~G~~i~ll~~ 737 (842)
+|||+|+.. +||...+|. ....+.|.+||.-|.....-+++++..
T Consensus 737 EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 737 EGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred cccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 999999966 566677663 123346899999998754445555544
No 114
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.77 E-value=2e-18 Score=199.94 Aligned_cols=164 Identities=21% Similarity=0.250 Sum_probs=117.0
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.|..+|.+.+...-.+..++|+|||.+|||++ ..-+++++++..... .+|+++||++|+.|+...+...+.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD~~--------VVIyvaPtKaLVnQvsa~VyaRF~ 581 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESDSD--------VVIYVAPTKALVNQVSANVYARFD 581 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhhcCCC--------EEEEecchHHHhhhhhHHHHHhhc
Confidence 36779999999999999999999999999997 555677777654322 589999999999999998888774
Q ss_pred cCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhh
Q 003178 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (842)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~ 560 (842)
...-..-..+.|....... +..-.|+|+|+-|+.|-.+|-..........+++++|+||+|.+....-...++.++.
T Consensus 582 ~~t~~rg~sl~g~ltqEYs---inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 582 TKTFLRGVSLLGDLTQEYS---INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred cCccccchhhHhhhhHHhc---CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH
Confidence 4322233334443322211 1122499999999999887765322234467899999999999876543344445544
Q ss_pred cccccccceeecccCcch
Q 003178 561 CLPRRRQSLLFSATMPKE 578 (842)
Q Consensus 561 ~l~~~~q~il~SATl~~~ 578 (842)
.+ .+.++.+|||+.+.
T Consensus 659 li--~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 659 LI--PCPFLVLSATIGNP 674 (1330)
T ss_pred hc--CCCeeEEecccCCH
Confidence 44 47799999997554
No 115
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=4.6e-18 Score=186.74 Aligned_cols=343 Identities=19% Similarity=0.227 Sum_probs=232.3
Q ss_pred ceeeeeehhhhhhhhhhcCcceEEeecc-CCCc--eeeehhHHHHHHHhhcc--------------------cCcccccC
Q 003178 398 GYIQMTRVQEATLSACLEGKDAVVKAKT-GTGK--SIAFLLPAIEAVLKATS--------------------SSTTQLVP 454 (842)
Q Consensus 398 g~~~~t~iQ~~aI~~il~g~dvii~A~T-GSGK--TlafllPil~~l~~~~~--------------------~~~~~~~~ 454 (842)
.-..+|+.|.+.+-.+.+.+|++..-.| +.|+ +-.|++.+|+|+++.+. ....+...
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3357999999999999999999854322 3454 56799999999986321 11234556
Q ss_pred ceEEEEeccchhHHHHHHHHHHHhhhcCCcee--E----------------------------EEEecceeee-------
Q 003178 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIG--V----------------------------LTLVGGTRFK------- 497 (842)
Q Consensus 455 ~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~--v----------------------------~~l~Gg~~~~------- 497 (842)
.+++|||||+|+-|..+.+.+..++.....-. | .++.|.++-.
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 88999999999999999999988853321100 0 0111111100
Q ss_pred -eccccccC--CCceEEecCccchhhhccccCC---ceEEEecceeeeeccccccccccc--ccchhhhhhccccc----
Q 003178 498 -VDQRRLES--DPCQILVATPGRLLDHIENKSG---LSVRLMGLKMLVLDEADHLLDLGF--RKDVENIVDCLPRR---- 565 (842)
Q Consensus 498 -~~~~~l~~--~~~~IIVaTPgrLl~~L~~~~~---~~~~L~~l~~lVlDEAh~lld~gf--~~~i~~Il~~l~~~---- 565 (842)
....+|.+ ...+||||+|-.|..+|.+... -.-.|+++.++|||.||-|+...+ ...+...+..+|.+
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccCC
Confidence 00000100 1479999999999988874322 123478899999999999885433 22233333444432
Q ss_pred -----------------ccceeecccCcchh---hccccceeeeec--------------ccccccccccccccccccCc
Q 003178 566 -----------------RQSLLFSATMPKEL---VLKREHTYIDTV--------------GLGSVETPVKIKQSCLVAPH 611 (842)
Q Consensus 566 -----------------~q~il~SATl~~~l---~~~~~~~~i~~v--------------~~~~~~~~~~l~~~~~~~~~ 611 (842)
+|+++||+-..+.+ .......+...+ .+...+....+....+....
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 69999999876552 111111111111 11111111222222233445
Q ss_pred hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccc
Q 003178 612 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 691 (842)
Q Consensus 612 ~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ 691 (842)
+.++..+..-|...+.......||||.|+.-.-.++..++++..+....+|...+..+-.++...|-.|...||+.|..+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 67777777666655555556789999999999999999999999999999999999999999999999999999999987
Q ss_pred c--cCCCCCCcceeEEecCCCChHHH---HHHhhcCCCCCC----CcceeEEeccchh
Q 003178 692 A--RGMDYPDVTSVVQVGIPPDREQY---IHRLGRTGREGK----EGEGVLLLAPWEE 740 (842)
Q Consensus 692 a--rGlDip~V~~VI~yd~P~s~~~y---iQRiGRaGR~G~----~G~~i~ll~~~E~ 740 (842)
. |..+|.+|..||.|.+|.+|..| +.+.+|+.-.|+ .-.|.++|+..+.
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 7 88999999999999999998877 566777654442 2467778877664
No 116
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=1.2e-18 Score=191.56 Aligned_cols=344 Identities=13% Similarity=0.135 Sum_probs=230.6
Q ss_pred hHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHH
Q 003178 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELAS 469 (842)
Q Consensus 390 l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~ 469 (842)
+...+..+..+....+|.++|..+.+|+++++.-.|.+||.++|.+.++..+...... -.+++.||.+++.
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s---------~~~~~~~~~~~~~ 345 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHAT---------NSLLPSEMVEHLR 345 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCccc---------ceecchhHHHHhh
Confidence 3444556667788899999999999999999999999999999999888766554322 3689999999987
Q ss_pred HHHHHHHHhhhcCCce--eEEEEecceeeeeccccccCCCceEEecCccchhhh-ccccCCceEEEecceeeeecccccc
Q 003178 470 QIAAEAIALLKNHDGI--GVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDH-IENKSGLSVRLMGLKMLVLDEADHL 546 (842)
Q Consensus 470 Qi~~~l~~l~~~~~~i--~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~-L~~~~~~~~~L~~l~~lVlDEAh~l 546 (842)
...+-+.-.+...+.. .++-.+.+. .......+.+.+.+++++.|...... |.+...+...+-.+.++++||+|..
T Consensus 346 ~~~~~~~V~~~~I~~~K~A~V~~~D~~-sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y 424 (1034)
T KOG4150|consen 346 NGSKGQVVHVEVIKARKSAYVEMSDKL-SETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALY 424 (1034)
T ss_pred ccCCceEEEEEehhhhhcceeecccCC-CchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeee
Confidence 6543322211111111 112222222 22344555566789999999887643 3344344444556788999999976
Q ss_pred ccccccc----chhhhhhcc-----cccccceeecccCcchhhccccceeeeeccc-ccccccccccccccccCc-----
Q 003178 547 LDLGFRK----DVENIVDCL-----PRRRQSLLFSATMPKELVLKREHTYIDTVGL-GSVETPVKIKQSCLVAPH----- 611 (842)
Q Consensus 547 ld~gf~~----~i~~Il~~l-----~~~~q~il~SATl~~~l~~~~~~~~i~~v~~-~~~~~~~~l~~~~~~~~~----- 611 (842)
+-. |.. ++..++..+ ....|++-.|||+.....+..+...++.+.+ .....|..-++.++..|+
T Consensus 425 ~~~-~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~ 503 (1034)
T KOG4150|consen 425 LFP-TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTS 503 (1034)
T ss_pred ecc-hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcc
Confidence 542 222 223332222 1357889999998766433322211111110 011122222233322221
Q ss_pred ----hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHh--------hhHHHHhhcCcchhhhhhhHHHhh
Q 003178 612 ----ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK--------MNVREMYSRKPQLYRDRISEEFRA 679 (842)
Q Consensus 612 ----~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~--------~~v~~lhg~~~~~~R~~v~~~F~~ 679 (842)
+.+..-...++.+.+. .+-++|.||++++.|+.+....+..- -.+..+.|+....+|.++....-.
T Consensus 504 ~~~~~~~i~E~s~~~~~~i~--~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~ 581 (1034)
T KOG4150|consen 504 KSEKSSKVVEVSHLFAEMVQ--HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG 581 (1034)
T ss_pred hhhhhhHHHHHHHHHHHHHH--cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC
Confidence 2223333334444332 35689999999999998877666431 246788899999999999999999
Q ss_pred cceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEe--ccchhhhhccC
Q 003178 680 SKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLL--APWEEYFLDDL 746 (842)
Q Consensus 680 g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll--~~~E~~~l~~L 746 (842)
|+..-+|+|++++.||||.+++.|++.++|.+.+.+.|..|||||.+++..++.+. .|-+++|+..-
T Consensus 582 G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP 650 (1034)
T KOG4150|consen 582 GKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHP 650 (1034)
T ss_pred CeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCc
Confidence 99999999999999999999999999999999999999999999999888776654 57788887643
No 117
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.76 E-value=2.2e-18 Score=203.40 Aligned_cols=312 Identities=20% Similarity=0.239 Sum_probs=193.7
Q ss_pred eeeeehhhhhhhhhhcC----cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHH
Q 003178 400 IQMTRVQEATLSACLEG----KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~g----~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l 475 (842)
..+++.|..++..+... ...++.+.||||||.+|+=. +...+..+. .+|||+|-.+|-.|+..+|
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~-i~~~L~~Gk----------qvLvLVPEI~Ltpq~~~rf 265 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEA-IAKVLAQGK----------QVLVLVPEIALTPQLLARF 265 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHH-HHHHHHcCC----------EEEEEeccccchHHHHHHH
Confidence 35778899999988765 57889999999999987554 444444332 5999999999999999999
Q ss_pred HHhhhcCCceeEEEEecceeee---eccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccccccc---
Q 003178 476 IALLKNHDGIGVLTLVGGTRFK---VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL--- 549 (842)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~---~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~--- 549 (842)
+..++. .+..+..+.+.. ..+.+...+...|+|+|=-- ....+.++.+|||||-|.-.-.
T Consensus 266 ~~rFg~----~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA----------lF~Pf~~LGLIIvDEEHD~sYKq~~ 331 (730)
T COG1198 266 KARFGA----KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA----------LFLPFKNLGLIIVDEEHDSSYKQED 331 (730)
T ss_pred HHHhCC----ChhhhcccCChHHHHHHHHHHhcCCceEEEEechh----------hcCchhhccEEEEeccccccccCCc
Confidence 999863 344444443322 23455566778999999322 2356789999999999975421
Q ss_pred ccccchh--hhhhcccccccceeecccCcchhhcccc---ceeeeecccccccccccccccccccCc--h-h----hHHH
Q 003178 550 GFRKDVE--NIVDCLPRRRQSLLFSATMPKELVLKRE---HTYIDTVGLGSVETPVKIKQSCLVAPH--E-L----HFQI 617 (842)
Q Consensus 550 gf~~~i~--~Il~~l~~~~q~il~SATl~~~l~~~~~---~~~i~~v~~~~~~~~~~l~~~~~~~~~--~-~----k~~~ 617 (842)
+.+-.-. .++..-..+.++||-|||.+-+-..... ...+..... .. ........++... . . --..
T Consensus 332 ~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R--~~-~a~~p~v~iiDmr~e~~~~~~~lS~~ 408 (730)
T COG1198 332 GPRYHARDVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNR--AG-RARLPRVEIIDMRKEPLETGRSLSPA 408 (730)
T ss_pred CCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhhcCceEEEEcccc--cc-ccCCCcceEEeccccccccCccCCHH
Confidence 1111112 2233333468899999998766322111 111111100 00 0001111111000 0 0 1134
Q ss_pred HHHHHhhhhcCCCCceEEEEecchhHH-----------------------------------------------------
Q 003178 618 LHHLLKEHILGTPDYKVIVFCSTGMVT----------------------------------------------------- 644 (842)
Q Consensus 618 L~~lL~~~~~~~~~~kiIVF~~s~~~~----------------------------------------------------- 644 (842)
|...+.+.+. .+.++|+|+|.+--+
T Consensus 409 Ll~~i~~~l~--~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L 486 (730)
T COG1198 409 LLEAIRKTLE--RGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHL 486 (730)
T ss_pred HHHHHHHHHh--cCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCee
Confidence 4555555542 456888886653322
Q ss_pred -------HHHHHHHHHH--hhhHHHHhhcCcchh--hhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCC----
Q 003178 645 -------SLLYLLLREM--KMNVREMYSRKPQLY--RDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP---- 709 (842)
Q Consensus 645 -------~~l~~~L~~~--~~~v~~lhg~~~~~~--R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P---- 709 (842)
+++.+.|... +..+..+.++.+... -...+..|.+|+.+|||.|.+++.|.|+|+|++|...|..
T Consensus 487 ~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~ 566 (730)
T COG1198 487 RAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLG 566 (730)
T ss_pred EEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhc
Confidence 2222222222 223334444433322 3466899999999999999999999999999998866543
Q ss_pred --------CChHHHHHHhhcCCCCCCCcceeEEeccchhh
Q 003178 710 --------PDREQYIHRLGRTGREGKEGEGVLLLAPWEEY 741 (842)
Q Consensus 710 --------~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~ 741 (842)
.....+.|-+|||||.+++|..++-...-+.+
T Consensus 567 ~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp 606 (730)
T COG1198 567 SPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHP 606 (730)
T ss_pred CCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcH
Confidence 24566789999999999999998876544433
No 118
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.75 E-value=2.7e-18 Score=187.03 Aligned_cols=321 Identities=21% Similarity=0.225 Sum_probs=217.4
Q ss_pred ccccccccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcC---cceEEeeccCCCceeeehhHHHHHHHhhccc
Q 003178 371 EEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG---KDAVVKAKTGTGKSIAFLLPAIEAVLKATSS 447 (842)
Q Consensus 371 ~~~~~~~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g---~dvii~A~TGSGKTlafllPil~~l~~~~~~ 447 (842)
.+-|++....|..-.+.|.+---|+- -..++|+|++++..++.+ +..||+.|+|+|||++-+-+ ...+.+
T Consensus 274 idyPlLeEYDFRND~~npdl~idLKP--st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTA-a~tikK---- 346 (776)
T KOG1123|consen 274 IDYPLLEEYDFRNDNVNPDLDIDLKP--STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTA-ACTIKK---- 346 (776)
T ss_pred cCchhhhhhccccCCCCCCCCcCcCc--ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeee-eeeecc----
Confidence 44577777788888888877665653 357899999999998864 57899999999999984332 222211
Q ss_pred CcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCC
Q 003178 448 STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG 527 (842)
Q Consensus 448 ~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~ 527 (842)
.+||||.+-.-+.||..++..+....+. .++.++. +.+.....++.|+|+|+.++..--.+...
T Consensus 347 ---------~clvLcts~VSVeQWkqQfk~wsti~d~-~i~rFTs------d~Ke~~~~~~gvvvsTYsMva~t~kRS~e 410 (776)
T KOG1123|consen 347 ---------SCLVLCTSAVSVEQWKQQFKQWSTIQDD-QICRFTS------DAKERFPSGAGVVVTTYSMVAYTGKRSHE 410 (776)
T ss_pred ---------cEEEEecCccCHHHHHHHHHhhcccCcc-ceEEeec------cccccCCCCCcEEEEeeehhhhcccccHH
Confidence 4899999999999999999988754332 2333333 22333345689999999877432111100
Q ss_pred -----ceEEEecceeeeecccccccccccccchhhhhhcccccccceeecccCcchhh-ccc------------------
Q 003178 528 -----LSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-LKR------------------ 583 (842)
Q Consensus 528 -----~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~-~~~------------------ 583 (842)
-.+.-..+.++|+||+|.+...-|+..+.-+-.++. ++++||+-.+-. +..
T Consensus 411 aek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHcK-----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~ 485 (776)
T KOG1123|consen 411 AEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHCK-----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQ 485 (776)
T ss_pred HHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHhh-----ccceeEEeeccccccccceeecchhhhccHHHHH
Confidence 001123578999999999988878877666655553 889999855411 000
Q ss_pred cceeeeeccccccc---ccc---------cccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHH
Q 003178 584 EHTYIDTVGLGSVE---TPV---------KIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLL 651 (842)
Q Consensus 584 ~~~~i~~v~~~~~~---~~~---------~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L 651 (842)
...++..+.-..+- ++. .-+...+.+....|+..+.-+|+.|- ..+.|||||..+.-....++-.|
T Consensus 486 ~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE--~RgDKiIVFsDnvfALk~YAikl 563 (776)
T KOG1123|consen 486 KKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHE--RRGDKIIVFSDNVFALKEYAIKL 563 (776)
T ss_pred hCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHH--hcCCeEEEEeccHHHHHHHHHHc
Confidence 01111111111111 110 01112233445567777777777664 35779999998876665555544
Q ss_pred HHHhhhHHHHhhcCcchhhhhhhHHHhh-cceEEEEeccccccCCCCCCcceeEEecCC-CChHHHHHHhhcCCCCC
Q 003178 652 REMKMNVREMYSRKPQLYRDRISEEFRA-SKRLILVTSDVSARGMDYPDVTSVVQVGIP-PDREQYIHRLGRTGREG 726 (842)
Q Consensus 652 ~~~~~~v~~lhg~~~~~~R~~v~~~F~~-g~~~VLVaTdv~arGlDip~V~~VI~yd~P-~s~~~yiQRiGRaGR~G 726 (842)
. --.++|..+|.+|+++++.|+. ..++.++-+-|+...+|+|..+++||...- .+..+=.||.||.-|+.
T Consensus 564 ~-----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 564 G-----KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred C-----CceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 3 3578999999999999999995 568999999999999999999999987654 46778899999998875
No 119
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.75 E-value=7.5e-18 Score=195.18 Aligned_cols=298 Identities=19% Similarity=0.210 Sum_probs=190.7
Q ss_pred eeeeehhhhhhhhhhc----C-cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHH
Q 003178 400 IQMTRVQEATLSACLE----G-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~----g-~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~ 474 (842)
..++.+|..||..+.. | +.+++++.||+|||.+ .+.++..|++.+... ++|+|+-+++|+.|.+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~~~~K--------RVLFLaDR~~Lv~QA~~a 234 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKSGWVK--------RVLFLADRNALVDQAYGA 234 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhcchhh--------eeeEEechHHHHHHHHHH
Confidence 4588899999876543 3 4589999999999998 677888888765432 699999999999999988
Q ss_pred HHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCC--ceEEEecceeeeecccccccccccc
Q 003178 475 AIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG--LSVRLMGLKMLVLDEADHLLDLGFR 552 (842)
Q Consensus 475 l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~--~~~~L~~l~~lVlDEAh~lld~gf~ 552 (842)
+..++.... ....+.+... ...+.|.|+|...+...+..... ..+....+++|||||||+ |..
T Consensus 235 f~~~~P~~~---~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~ 299 (875)
T COG4096 235 FEDFLPFGT---KMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIY 299 (875)
T ss_pred HHHhCCCcc---ceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHH
Confidence 888765432 2222211111 11379999999999877654311 122234589999999999 444
Q ss_pred cchhhhhhcccccccceeecccCcchhhcccccee------e----eec------cccccc----------cccc-----
Q 003178 553 KDVENIVDCLPRRRQSLLFSATMPKELVLKREHTY------I----DTV------GLGSVE----------TPVK----- 601 (842)
Q Consensus 553 ~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~------i----~~v------~~~~~~----------~~~~----- 601 (842)
.....|+.++..-.|. ++||+...+.......+ . ..+ ...... .+..
T Consensus 300 ~~~~~I~dYFdA~~~g--LTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~sere 377 (875)
T COG4096 300 SEWSSILDYFDAATQG--LTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSERE 377 (875)
T ss_pred hhhHHHHHHHHHHHHh--hccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhh
Confidence 4555777777544433 39997664211110000 0 000 000000 0000
Q ss_pred ------c---cccccccC------chhhHHHHHHHHhhhhcC--C--CCceEEEEecchhHHHHHHHHHHHHhh-----h
Q 003178 602 ------I---KQSCLVAP------HELHFQILHHLLKEHILG--T--PDYKVIVFCSTGMVTSLLYLLLREMKM-----N 657 (842)
Q Consensus 602 ------l---~~~~~~~~------~~~k~~~L~~lL~~~~~~--~--~~~kiIVF~~s~~~~~~l~~~L~~~~~-----~ 657 (842)
+ .+.+-..+ .......+...+...+.. . ..+|+||||.+..+|+.+...|....- -
T Consensus 378 k~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~ 457 (875)
T COG4096 378 KLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRY 457 (875)
T ss_pred hhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCce
Confidence 0 00000000 011224445555555543 1 146999999999999999999987521 2
Q ss_pred HHHHhhcCcchhhhhhhHHHhhc--ceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCC
Q 003178 658 VREMYSRKPQLYRDRISEEFRAS--KRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGRE 725 (842)
Q Consensus 658 v~~lhg~~~~~~R~~v~~~F~~g--~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~ 725 (842)
+..+.+.-.+ -...+..|... -..|.++.+++..|||+|.|.++|.+-.-.|..-|.|++||+-|.
T Consensus 458 a~~IT~d~~~--~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 458 AMKITGDAEQ--AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred EEEEeccchh--hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 3334444322 23445666542 367888999999999999999999999999999999999999885
No 120
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=5.3e-17 Score=185.94 Aligned_cols=316 Identities=16% Similarity=0.186 Sum_probs=203.9
Q ss_pred eeeeehhhhhhhhhhc----CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHH
Q 003178 400 IQMTRVQEATLSACLE----GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~----g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l 475 (842)
..+.++|+..+.++.+ +.-.|+...+|-|||+. .+..|..+...... .+ .+|||||. .+..||..++
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k~------~~-paLIVCP~-Tii~qW~~E~ 274 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGKL------TK-PALIVCPA-TIIHQWMKEF 274 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcccc------cC-ceEEEccH-HHHHHHHHHH
Confidence 3567899999988764 56789999999999996 33334444433111 11 48999996 5668888888
Q ss_pred HHhhhcCCceeEEEEecceeeee------------ccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccc
Q 003178 476 IALLKNHDGIGVLTLVGGTRFKV------------DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEA 543 (842)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~------------~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEA 543 (842)
..+. +.+.|.+++|...... ...........|+|+|+..+.-. .. .+.-..++|+|+||.
T Consensus 275 ~~w~---p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~-~d----~l~~~~W~y~ILDEG 346 (923)
T KOG0387|consen 275 QTWW---PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ-GD----DLLGILWDYVILDEG 346 (923)
T ss_pred HHhC---cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-Cc----ccccccccEEEecCc
Confidence 8874 5677888877655211 01111112347899998776422 11 111235899999999
Q ss_pred ccccccccccchhhhhhcccccccceeecccCcch-h-------------------------------------------
Q 003178 544 DHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE-L------------------------------------------- 579 (842)
Q Consensus 544 h~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~-l------------------------------------------- 579 (842)
|++-+.. .++...+..++ ..+.+++|.|+-.+ +
T Consensus 347 H~IrNpn--s~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~ 423 (923)
T KOG0387|consen 347 HRIRNPN--SKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQ 423 (923)
T ss_pred ccccCCc--cHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHH
Confidence 9986542 22222222222 22334445553211 0
Q ss_pred --------------------------------------------------------------hccccceeeeecccc-cc
Q 003178 580 --------------------------------------------------------------VLKREHTYIDTVGLG-SV 596 (842)
Q Consensus 580 --------------------------------------------------------------~~~~~~~~i~~v~~~-~~ 596 (842)
.....+.+.....+. ..
T Consensus 424 ~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkIC 503 (923)
T KOG0387|consen 424 TAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKIC 503 (923)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhc
Confidence 000000000000000 00
Q ss_pred cccccccc---------cc-cccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHH-HHhhhHHHHhhcC
Q 003178 597 ETPVKIKQ---------SC-LVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR-EMKMNVREMYSRK 665 (842)
Q Consensus 597 ~~~~~l~~---------~~-~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~-~~~~~v~~lhg~~ 665 (842)
..|..+.. .+ -.....-|+..+..+|..+.. .+.++|+|..++.+.+.+...|. ..++.++.+.|..
T Consensus 504 nHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~k--qg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT 581 (923)
T KOG0387|consen 504 NHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKK--QGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTT 581 (923)
T ss_pred CCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhh--CCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCC
Confidence 00000000 00 111123367778888887763 46699999999999999999998 5799999999999
Q ss_pred cchhhhhhhHHHhhcc--eEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcc--eeEEecc
Q 003178 666 PQLYRDRISEEFRASK--RLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGE--GVLLLAP 737 (842)
Q Consensus 666 ~~~~R~~v~~~F~~g~--~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~--~i~ll~~ 737 (842)
+...|..++.+|.++. .-+|++|.|.+-|+|+.+.+-||.||+.|+|+.-.|..-||.|.|+.-. .|.|++.
T Consensus 582 ~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 582 PAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred ccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecC
Confidence 9999999999999776 3467899999999999999999999999999999999999999996543 3445554
No 121
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.74 E-value=8.7e-18 Score=196.98 Aligned_cols=281 Identities=23% Similarity=0.280 Sum_probs=190.3
Q ss_pred ceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH
Q 003178 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (842)
Q Consensus 398 g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~ 477 (842)
|+ .|+..|+--..-++.|+..-+.||||.|||.--++.. ++-+.. +-+++||+||..|+.|+++.+.+
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~s---l~~a~k--------gkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMS---LYLAKK--------GKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHH---HHHHhc--------CCeEEEEecCHHHHHHHHHHHHH
Confidence 55 7999999988999999999999999999998432222 222211 12799999999999999999999
Q ss_pred hhhcCCceeEEEEecce-ee---eeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccccccc----
Q 003178 478 LLKNHDGIGVLTLVGGT-RF---KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL---- 549 (842)
Q Consensus 478 l~~~~~~i~v~~l~Gg~-~~---~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~---- 549 (842)
+.....+..+.+++.+. +. .....++.++.++|+|+|..-|...+..-.. .++++|++|.+|.++-.
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-----~kFdfifVDDVDA~LkaskNv 222 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-----LKFDFIFVDDVDAILKASKNV 222 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-----cCCCEEEEccHHHHHhccccH
Confidence 98655434444433332 22 1223566677899999998887665543211 26889999999987643
Q ss_pred -------ccccchh-------hhhhcc------------------------cccccceeecccCcchh---hccccceee
Q 003178 550 -------GFRKDVE-------NIVDCL------------------------PRRRQSLLFSATMPKEL---VLKREHTYI 588 (842)
Q Consensus 550 -------gf~~~i~-------~Il~~l------------------------~~~~q~il~SATl~~~l---~~~~~~~~i 588 (842)
||..... .+...+ .+..++++.|||..+.- .+.+...-.
T Consensus 223 DriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF 302 (1187)
T COG1110 223 DRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF 302 (1187)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC
Confidence 3333211 110000 12357889999986641 111111100
Q ss_pred eecccccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecc---hhHHHHHHHHHHHHhhhHHHHhhcC
Q 003178 589 DTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCST---GMVTSLLYLLLREMKMNVREMYSRK 665 (842)
Q Consensus 589 ~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s---~~~~~~l~~~L~~~~~~v~~lhg~~ 665 (842)
. ++ .......++...|+.. .....+..+++.. +...|||++. ++.++.++++|+..|+++..+|+.
T Consensus 303 e-vG-~~~~~LRNIvD~y~~~---~~~e~~~elvk~l-----G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~- 371 (1187)
T COG1110 303 E-VG-SGGEGLRNIVDIYVES---ESLEKVVELVKKL-----GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE- 371 (1187)
T ss_pred c-cC-ccchhhhheeeeeccC---ccHHHHHHHHHHh-----CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-
Confidence 0 00 0111122333333333 3344455566553 4578999999 999999999999999999999984
Q ss_pred cchhhhhhhHHHhhcceEEEEec----cccccCCCCCC-cceeEEecCCC
Q 003178 666 PQLYRDRISEEFRASKRLILVTS----DVSARGMDYPD-VTSVVQVGIPP 710 (842)
Q Consensus 666 ~~~~R~~v~~~F~~g~~~VLVaT----dv~arGlDip~-V~~VI~yd~P~ 710 (842)
..+.++.|..|+++|||++ .++.||||+|. ++++|.|++|.
T Consensus 372 ----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 372 ----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred ----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 3778999999999999965 57889999998 89999999993
No 122
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.73 E-value=5.2e-17 Score=179.40 Aligned_cols=165 Identities=21% Similarity=0.262 Sum_probs=125.5
Q ss_pred cccceeecccCcchhhccccceeeeeccccccccccccc-ccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhH
Q 003178 565 RRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKIK-QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMV 643 (842)
Q Consensus 565 ~~q~il~SATl~~~l~~~~~~~~i~~v~~~~~~~~~~l~-~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~ 643 (842)
..|+|+.|||+.+.-.-......+..+- .|..+- ..+.+.+.....+-|..-+.... ..+.++||-+-|+++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~vveQiI-----RPTGLlDP~ievRp~~~QvdDL~~EI~~r~--~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNVVEQII-----RPTGLLDPEIEVRPTKGQVDDLLSEIRKRV--AKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhccCceeEEee-----cCCCCCCCceeeecCCCcHHHHHHHHHHHH--hcCCeEEEEeehHHH
Confidence 4699999999766422222212222111 111111 12223344444555555555443 245799999999999
Q ss_pred HHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCC-----CChHHHHHH
Q 003178 644 TSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP-----PDREQYIHR 718 (842)
Q Consensus 644 ~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P-----~s~~~yiQR 718 (842)
++.|..+|.+.|+.+.++|+.+..-+|..++...+.|..+|||.-+.+-.|||+|.|.+|...|.. .|-.+.+|-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988754 688999999
Q ss_pred hhcCCCCCCCcceeEEecc
Q 003178 719 LGRTGREGKEGEGVLLLAP 737 (842)
Q Consensus 719 iGRaGR~G~~G~~i~ll~~ 737 (842)
+|||+|. -.|.++++...
T Consensus 539 IGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 539 IGRAARN-VNGKVILYADK 556 (663)
T ss_pred HHHHhhc-cCCeEEEEchh
Confidence 9999994 47999987754
No 123
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=1.4e-16 Score=185.30 Aligned_cols=318 Identities=19% Similarity=0.215 Sum_probs=202.7
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.++++|.-+.-.++.|+ |+.+.||+|||++..+|++...+... .+.|++|+-.||.|-++++..++.
T Consensus 78 r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~-----------~VhvvT~NdyLA~RDae~m~~ly~ 144 (764)
T PRK12326 78 RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGR-----------RVHVITVNDYLARRDAEWMGPLYE 144 (764)
T ss_pred CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCC-----------CeEEEcCCHHHHHHHHHHHHHHHH
Confidence 47888988887777764 77999999999999999986665433 488999999999999999999988
Q ss_pred cCCceeEEEEecceeeeeccccccCCCceEEecCccchh-hhccccCCc---eEEEecceeeeeccccccc-ccccc---
Q 003178 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLL-DHIENKSGL---SVRLMGLKMLVLDEADHLL-DLGFR--- 552 (842)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl-~~L~~~~~~---~~~L~~l~~lVlDEAh~ll-d~gf~--- 552 (842)
.. |+.+.+++++.+.... +... .|+|+++|..-|- +.|...... ......+.+.||||||.++ |....
T Consensus 145 ~L-GLsvg~i~~~~~~~er-r~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLi 220 (764)
T PRK12326 145 AL-GLTVGWITEESTPEER-RAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLV 220 (764)
T ss_pred hc-CCEEEEECCCCCHHHH-HHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCcee
Confidence 75 8999999887654322 2222 3899999998763 444332110 1124568899999999876 21100
Q ss_pred -----------cchhhhhhccccc--------ccceeecc-------------------cCcch---h--------hccc
Q 003178 553 -----------KDVENIVDCLPRR--------RQSLLFSA-------------------TMPKE---L--------VLKR 583 (842)
Q Consensus 553 -----------~~i~~Il~~l~~~--------~q~il~SA-------------------Tl~~~---l--------~~~~ 583 (842)
..+..++..+... .+.+.++. +.... + .+..
T Consensus 221 ISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~ 300 (764)
T PRK12326 221 LAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQR 300 (764)
T ss_pred eeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 0111111111110 11111111 00000 0 0000
Q ss_pred cceeee------ec------------------------------------------------------------------
Q 003178 584 EHTYID------TV------------------------------------------------------------------ 591 (842)
Q Consensus 584 ~~~~i~------~v------------------------------------------------------------------ 591 (842)
+..|+- .+
T Consensus 301 d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~ 380 (764)
T PRK12326 301 DVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLR 380 (764)
T ss_pred CCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHH
Confidence 000000 00
Q ss_pred ---ccccccccccc------cccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHh
Q 003178 592 ---GLGSVETPVKI------KQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMY 662 (842)
Q Consensus 592 ---~~~~~~~~~~l------~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lh 662 (842)
.+.....|.+. ....++.....|+..+..-+.... ..+.++||.+.|....+.++..|.+.+++...|+
T Consensus 381 ~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~--~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLN 458 (764)
T PRK12326 381 QFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVH--ETGQPVLVGTHDVAESEELAERLRAAGVPAVVLN 458 (764)
T ss_pred HHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHH--HcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeec
Confidence 00000000000 011122334456666665555443 3567999999999999999999999999988888
Q ss_pred hcCcchhhhhhhHHHhhcc-eEEEEeccccccCCCCC---------------CcceeEEecCCCChHHHHHHhhcCCCCC
Q 003178 663 SRKPQLYRDRISEEFRASK-RLILVTSDVSARGMDYP---------------DVTSVVQVGIPPDREQYIHRLGRTGREG 726 (842)
Q Consensus 663 g~~~~~~R~~v~~~F~~g~-~~VLVaTdv~arGlDip---------------~V~~VI~yd~P~s~~~yiQRiGRaGR~G 726 (842)
+.-...+ ..++. ..|+ -.|.|||++|+||.||. +==+||....+.|..---|-.|||||-|
T Consensus 459 Ak~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG 535 (764)
T PRK12326 459 AKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG 535 (764)
T ss_pred cCchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC
Confidence 8633222 11211 2443 56999999999999996 2237999999999999999999999999
Q ss_pred CCcceeEEeccchh
Q 003178 727 KEGEGVLLLAPWEE 740 (842)
Q Consensus 727 ~~G~~i~ll~~~E~ 740 (842)
.+|.+-.|++-.|.
T Consensus 536 DpGss~f~lSleDd 549 (764)
T PRK12326 536 DPGSSVFFVSLEDD 549 (764)
T ss_pred CCCceeEEEEcchh
Confidence 99999999986654
No 124
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.72 E-value=3.2e-17 Score=186.79 Aligned_cols=315 Identities=15% Similarity=0.208 Sum_probs=209.2
Q ss_pred eeeehhhhhhhhhhc----CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 401 QMTRVQEATLSACLE----GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~----g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
.|+++|.+.++++.+ |-+.|+...+|-|||+. .|..|..+...... +|| -||+||...| ..|.+++.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~~------~GP-fLVi~P~StL-~NW~~Ef~ 237 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKGI------PGP-FLVIAPKSTL-DNWMNEFK 237 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcCC------CCC-eEEEeeHhhH-HHHHHHHH
Confidence 588999999888764 67899999999999997 55555555442211 122 5899998888 44556666
Q ss_pred HhhhcCCceeEEEEecceeeeecc--ccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccc
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKVDQ--RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~--~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~ 554 (842)
++ .|++.+.+++|+..-.... ..+..+..+|+|+|+++.+.--. .+.--+++||||||||++-+.. ..
T Consensus 238 rf---~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~-----~lk~~~W~ylvIDEaHRiKN~~--s~ 307 (971)
T KOG0385|consen 238 RF---TPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS-----FLKKFNWRYLVIDEAHRIKNEK--SK 307 (971)
T ss_pred Hh---CCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH-----HHhcCCceEEEechhhhhcchh--hH
Confidence 65 5789999999986432221 22234468999999998875311 1112368999999999987642 22
Q ss_pred hhhhhhcccccccceeecccCcch-h------------------------------------------------------
Q 003178 555 VENIVDCLPRRRQSLLFSATMPKE-L------------------------------------------------------ 579 (842)
Q Consensus 555 i~~Il~~l~~~~q~il~SATl~~~-l------------------------------------------------------ 579 (842)
+..++..+... -.+|+|.|+-.+ +
T Consensus 308 L~~~lr~f~~~-nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~ 386 (971)
T KOG0385|consen 308 LSKILREFKTD-NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKS 386 (971)
T ss_pred HHHHHHHhccc-ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHH
Confidence 33333333211 123444442111 0
Q ss_pred ----hccccceeeeeccc-------------------cccc--cccc-----------ccccc---------------cc
Q 003178 580 ----VLKREHTYIDTVGL-------------------GSVE--TPVK-----------IKQSC---------------LV 608 (842)
Q Consensus 580 ----~~~~~~~~i~~v~~-------------------~~~~--~~~~-----------l~~~~---------------~~ 608 (842)
.+.....++-.+++ .... .... ..+.| ..
T Consensus 387 dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehL 466 (971)
T KOG0385|consen 387 DVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHL 466 (971)
T ss_pred hHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHH
Confidence 00000000000000 0000 0000 00111 11
Q ss_pred cCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhc---ceEEE
Q 003178 609 APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRAS---KRLIL 685 (842)
Q Consensus 609 ~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g---~~~VL 685 (842)
+...-|+.+|..+|.... ..+.++|||..-..+.+.+..++--.++.++.+.|.++..+|...++.|... +.-+|
T Consensus 467 v~nSGKm~vLDkLL~~Lk--~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFl 544 (971)
T KOG0385|consen 467 VTNSGKMLVLDKLLPKLK--EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFL 544 (971)
T ss_pred HhcCcceehHHHHHHHHH--hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEE
Confidence 223346667777776654 4578999999999999999998888899999999999999999999999854 35578
Q ss_pred EeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCc--ceeEEecc
Q 003178 686 VTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEG--EGVLLLAP 737 (842)
Q Consensus 686 VaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G--~~i~ll~~ 737 (842)
++|.+.+.|||+-..++||.||-.++|..-.|..-||.|.|+.. .++.|++.
T Consensus 545 LSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLite 598 (971)
T KOG0385|consen 545 LSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITE 598 (971)
T ss_pred EeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEecc
Confidence 99999999999999999999999999999999999999999755 45556665
No 125
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.71 E-value=5.1e-17 Score=194.43 Aligned_cols=123 Identities=22% Similarity=0.281 Sum_probs=110.1
Q ss_pred hhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccc
Q 003178 613 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 692 (842)
Q Consensus 613 ~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~a 692 (842)
..+..+...|.... ..+.++||||+|+..++.++..|...++.+..+||++++.+|..++..|+.|++.|||||++++
T Consensus 430 ~q~~~L~~~L~~~~--~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~ 507 (652)
T PRK05298 430 GQVDDLLSEIRKRV--AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR 507 (652)
T ss_pred ccHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHh
Confidence 34555666665544 3467999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeEEecC-----CCChHHHHHHhhcCCCCCCCcceeEEeccc
Q 003178 693 RGMDYPDVTSVVQVGI-----PPDREQYIHRLGRTGREGKEGEGVLLLAPW 738 (842)
Q Consensus 693 rGlDip~V~~VI~yd~-----P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~ 738 (842)
+|+|+|++++||++|. |.+..+|+||+|||||. ..|.|++|+...
T Consensus 508 rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 508 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred CCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 9999999999999885 78999999999999996 689999999853
No 126
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.70 E-value=1.9e-16 Score=177.48 Aligned_cols=299 Identities=19% Similarity=0.236 Sum_probs=208.3
Q ss_pred CcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCce----------e----------------------EEEEecc--
Q 003178 448 STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI----------G----------------------VLTLVGG-- 493 (842)
Q Consensus 448 ~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i----------~----------------------v~~l~Gg-- 493 (842)
..++..+.+++|||+|+|..|.++.+.+.+++.....+ . ..++.|.
T Consensus 30 ~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~D 109 (442)
T PF06862_consen 30 FRDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNND 109 (442)
T ss_pred hhccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCcc
Confidence 34566788899999999999999999888876431000 0 0001111
Q ss_pred ------eeeeeccccccC--CCceEEecCccchhhhccc---cCCceEEEecceeeeeccccccc--ccccccchhhhhh
Q 003178 494 ------TRFKVDQRRLES--DPCQILVATPGRLLDHIEN---KSGLSVRLMGLKMLVLDEADHLL--DLGFRKDVENIVD 560 (842)
Q Consensus 494 ------~~~~~~~~~l~~--~~~~IIVaTPgrLl~~L~~---~~~~~~~L~~l~~lVlDEAh~ll--d~gf~~~i~~Il~ 560 (842)
..+.....++.+ ..+|||||+|-.|...+.. ...-...|++|+++|||.||.|+ +|.+...+...++
T Consensus 110 D~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN 189 (442)
T PF06862_consen 110 DCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLN 189 (442)
T ss_pred ceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhc
Confidence 111111111111 1479999999999988874 22223458999999999999877 5666666666666
Q ss_pred ccccc---------------------ccceeecccCcchhhccc---cceeeeeccc--------ccccccccccccccc
Q 003178 561 CLPRR---------------------RQSLLFSATMPKELVLKR---EHTYIDTVGL--------GSVETPVKIKQSCLV 608 (842)
Q Consensus 561 ~l~~~---------------------~q~il~SATl~~~l~~~~---~~~~i~~v~~--------~~~~~~~~l~~~~~~ 608 (842)
..|++ +|+|++|+...+++.... ...+...+.. ........+.|.+..
T Consensus 190 ~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r 269 (442)
T PF06862_consen 190 LQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQR 269 (442)
T ss_pred cCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEE
Confidence 66642 799999999988742110 1111111000 011223344444432
Q ss_pred -------cCchhhHHHHHHHHhhhhc-CCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhc
Q 003178 609 -------APHELHFQILHHLLKEHIL-GTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRAS 680 (842)
Q Consensus 609 -------~~~~~k~~~L~~lL~~~~~-~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g 680 (842)
...+.++..+..-+...+. .....++|||++|.-+-..+.++|++.++.+..+|...++.+-.++...|..|
T Consensus 270 ~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G 349 (442)
T PF06862_consen 270 FDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG 349 (442)
T ss_pred ecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC
Confidence 2345666666664444444 45667999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccccc--cCCCCCCcceeEEecCCCChHHHHHHhhcCCCCC------CCcceeEEeccchhhhhccC
Q 003178 681 KRLILVTSDVSA--RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREG------KEGEGVLLLAPWEEYFLDDL 746 (842)
Q Consensus 681 ~~~VLVaTdv~a--rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G------~~G~~i~ll~~~E~~~l~~L 746 (842)
+..||+.|.-+. +-..|.+|+.||.|++|..+.-|...+.-.+... ....|.++++..|..-++.|
T Consensus 350 ~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 350 RKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred CceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 999999999877 7788999999999999999999988776554433 25788999998887655544
No 127
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.70 E-value=4.8e-17 Score=198.61 Aligned_cols=119 Identities=17% Similarity=0.151 Sum_probs=82.6
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccccc
Q 003178 614 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSAR 693 (842)
Q Consensus 614 k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ar 693 (842)
....+...+.... ..+++++|+++|.+..+.++..|....+.+ ...|.. ..+.+++++|+++...||++|..+..
T Consensus 632 ~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~--~~~~~l~~~F~~~~~~vLlG~~sFwE 706 (820)
T PRK07246 632 YAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKN--GTAYNIKKRFDRGEQQILLGLGSFWE 706 (820)
T ss_pred HHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCC--ccHHHHHHHHHcCCCeEEEecchhhC
Confidence 3445566665544 346799999999999999999987543333 222211 13567899999998999999999999
Q ss_pred CCCCCC--cceeEEecCCC------------------------------ChHHHHHHhhcCCCCCCCcceeEEecc
Q 003178 694 GMDYPD--VTSVVQVGIPP------------------------------DREQYIHRLGRTGREGKEGEGVLLLAP 737 (842)
Q Consensus 694 GlDip~--V~~VI~yd~P~------------------------------s~~~yiQRiGRaGR~G~~G~~i~ll~~ 737 (842)
|||+|+ ...||...+|. -...+.|-+||.-|....--+++++.+
T Consensus 707 GVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~ 782 (820)
T PRK07246 707 GVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDR 782 (820)
T ss_pred CCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 999974 55667666652 123347999999997743224555554
No 128
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.69 E-value=1.5e-16 Score=191.01 Aligned_cols=301 Identities=16% Similarity=0.143 Sum_probs=171.1
Q ss_pred eeehhhhhhhhhhc----------CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHH
Q 003178 402 MTRVQEATLSACLE----------GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (842)
Q Consensus 402 ~t~iQ~~aI~~il~----------g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi 471 (842)
+++.|..|+..+.. .+..+|+++||||||++.+. ++..++... ...++|||+|+.+|..|+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~-la~~l~~~~--------~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLF-AARKALELL--------KNPKVFFVVDRRELDYQL 309 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHH-HHHHHHhhc--------CCCeEEEEECcHHHHHHH
Confidence 66788888876532 25789999999999997433 334444221 123799999999999999
Q ss_pred HHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecc-eeeeecccccccccc
Q 003178 472 AAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL-KMLVLDEADHLLDLG 550 (842)
Q Consensus 472 ~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l-~~lVlDEAh~lld~g 550 (842)
.+.+..+..... ...+ +...-...+......|+|+|...|...+..... ......- -+||+||||+...-.
T Consensus 310 ~~~f~~~~~~~~-----~~~~--s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~-~~~~~~~~~lvIvDEaHrs~~~~ 381 (667)
T TIGR00348 310 MKEFQSLQKDCA-----ERIE--SIAELKRLLEKDDGGIIITTIQKFDKKLKEEEE-KFPVDRKEVVVIFDEAHRSQYGE 381 (667)
T ss_pred HHHHHhhCCCCC-----cccC--CHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhh-ccCCCCCCEEEEEEcCccccchH
Confidence 999988753210 0001 111011222233368999999998754322100 0001111 279999999964322
Q ss_pred cccchhhhh-hcccccccceeecccCcchh-----hcccc--ceeeeecc------ccc------ccccc--c-------
Q 003178 551 FRKDVENIV-DCLPRRRQSLLFSATMPKEL-----VLKRE--HTYIDTVG------LGS------VETPV--K------- 601 (842)
Q Consensus 551 f~~~i~~Il-~~l~~~~q~il~SATl~~~l-----~~~~~--~~~i~~v~------~~~------~~~~~--~------- 601 (842)
+..++ ..+| +...++||||+-... ..... ..++.... .+. ..... .
T Consensus 382 ----~~~~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~ 456 (667)
T TIGR00348 382 ----LAKNLKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLD 456 (667)
T ss_pred ----HHHHHHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHH
Confidence 33333 3443 567999999984310 00000 00011000 000 00000 0
Q ss_pred --ccccccc-----------------------cCchhhHHHHHHHHhhhhc---CCCCceEEEEecchhHHHHHHHHHHH
Q 003178 602 --IKQSCLV-----------------------APHELHFQILHHLLKEHIL---GTPDYKVIVFCSTGMVTSLLYLLLRE 653 (842)
Q Consensus 602 --l~~~~~~-----------------------~~~~~k~~~L~~lL~~~~~---~~~~~kiIVF~~s~~~~~~l~~~L~~ 653 (842)
+...+.. .........+...+.+++. ....++++|||.++..|..++..|.+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~ 536 (667)
T TIGR00348 457 AFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDE 536 (667)
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHh
Confidence 0000000 0001111222222222321 11247999999999999999999876
Q ss_pred Hh-----hhHHHHhhcCcch---------------------hhhhhhHHHhh-cceEEEEeccccccCCCCCCcceeEEe
Q 003178 654 MK-----MNVREMYSRKPQL---------------------YRDRISEEFRA-SKRLILVTSDVSARGMDYPDVTSVVQV 706 (842)
Q Consensus 654 ~~-----~~v~~lhg~~~~~---------------------~R~~v~~~F~~-g~~~VLVaTdv~arGlDip~V~~VI~y 706 (842)
.. .....+++..+.. ....++++|+. +..+|||.++.+.+|+|.|.+++++..
T Consensus 537 ~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyld 616 (667)
T TIGR00348 537 ELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLD 616 (667)
T ss_pred hcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEe
Confidence 52 2222333332211 12367888976 678999999999999999999998876
Q ss_pred cCCCChHHHHHHhhcCCCC
Q 003178 707 GIPPDREQYIHRLGRTGRE 725 (842)
Q Consensus 707 d~P~s~~~yiQRiGRaGR~ 725 (842)
-+-.+ ..++|.+||+.|.
T Consensus 617 Kplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 617 KPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred ccccc-cHHHHHHHHhccc
Confidence 65554 5689999999994
No 129
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.69 E-value=2.1e-16 Score=174.92 Aligned_cols=288 Identities=18% Similarity=0.141 Sum_probs=187.0
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEeccee
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~ 495 (842)
.+-++-+|||.||||.- +|+++...+ .+++--|.|-||.++++++++. |+.+.+++|...
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~ak-----------sGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~ 250 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKSAK-----------SGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEER 250 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhhhc-----------cceecchHHHHHHHHHHHhhhc-----CCCcccccccee
Confidence 34467789999999985 777777654 3689999999999999999887 788889998765
Q ss_pred eeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhhcccccccceeecccC
Q 003178 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (842)
Q Consensus 496 ~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl 575 (842)
....- . .+.++.+-||-+++.- -..+++.||||.+.|-|...+-.+...+--+.
T Consensus 251 ~~~~~-~--~~~a~hvScTVEM~sv-----------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~------------ 304 (700)
T KOG0953|consen 251 RFVLD-N--GNPAQHVSCTVEMVSV-----------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA------------ 304 (700)
T ss_pred eecCC-C--CCcccceEEEEEEeec-----------CCceEEEEehhHHhhcCcccchHHHHHHHhhh------------
Confidence 44221 1 2346788888766421 13578999999999988654444443322111
Q ss_pred cchhhccccceeeeecccccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHh
Q 003178 576 PKELVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK 655 (842)
Q Consensus 576 ~~~l~~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~ 655 (842)
..++-+..++..++.+......+...+....+..- ..+.....+ ...+.+-.++-+|| |-|++.+..+...+.+.+
T Consensus 305 AdEiHLCGepsvldlV~~i~k~TGd~vev~~YeRl--~pL~v~~~~-~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g 380 (700)
T KOG0953|consen 305 ADEIHLCGEPSVLDLVRKILKMTGDDVEVREYERL--SPLVVEETA-LGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAG 380 (700)
T ss_pred hhhhhccCCchHHHHHHHHHhhcCCeeEEEeeccc--Ccceehhhh-hhhhccCCCCCeEE-EeehhhHHHHHHHHHHhc
Confidence 12222222222222221111111222211111000 000111111 11222234456666 447888888888888887
Q ss_pred hh-HHHHhhcCcchhhhhhhHHHhh--cceEEEEeccccccCCCCCCcceeEEecC---------CCChHHHHHHhhcCC
Q 003178 656 MN-VREMYSRKPQLYRDRISEEFRA--SKRLILVTSDVSARGMDYPDVTSVVQVGI---------PPDREQYIHRLGRTG 723 (842)
Q Consensus 656 ~~-v~~lhg~~~~~~R~~v~~~F~~--g~~~VLVaTdv~arGlDip~V~~VI~yd~---------P~s~~~yiQRiGRaG 723 (842)
.. ++++||.+++..|......|.+ ++.+||||||++++|+|+ +++-||.|++ |.+..+..|.+||||
T Consensus 381 ~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAG 459 (700)
T KOG0953|consen 381 NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAG 459 (700)
T ss_pred CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhccc
Confidence 66 9999999999999999999986 889999999999999999 7888888876 457889999999999
Q ss_pred CCCC---CcceeEEeccchhhhhccCCCCCCCCCC
Q 003178 724 REGK---EGEGVLLLAPWEEYFLDDLKDLPLDKLQ 755 (842)
Q Consensus 724 R~G~---~G~~i~ll~~~E~~~l~~L~~~~l~~~~ 755 (842)
|.|. .|.+.+|.. .+...++.+-+.|.+++.
T Consensus 460 Rf~s~~~~G~vTtl~~-eDL~~L~~~l~~p~epi~ 493 (700)
T KOG0953|consen 460 RFGSKYPQGEVTTLHS-EDLKLLKRILKRPVEPIK 493 (700)
T ss_pred ccccCCcCceEEEeeH-hhHHHHHHHHhCCchHHH
Confidence 9983 455555543 344555555555555444
No 130
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=6.8e-16 Score=183.57 Aligned_cols=318 Identities=19% Similarity=0.218 Sum_probs=200.1
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.++++|. |-.+.-+.--|+.+.||+|||+++.+|++...+... .+.|++||-.||.|-++++..++.
T Consensus 82 ~~ydVQl--iGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~-----------~VhvvT~ndyLA~RD~e~m~~l~~ 148 (913)
T PRK13103 82 RHFDVQL--IGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGK-----------GVHVVTVNDYLARRDANWMRPLYE 148 (913)
T ss_pred CcchhHH--HhhhHhccCccccccCCCCChHHHHHHHHHHHHcCC-----------CEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4566664 444444556788999999999999999986665433 488999999999999999999998
Q ss_pred cCCceeEEEEecceeeeeccccccCCCceEEecCccch-hhhccccCCc---eEEEecceeeeeccccccc-cccccc--
Q 003178 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGL---SVRLMGLKMLVLDEADHLL-DLGFRK-- 553 (842)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrL-l~~L~~~~~~---~~~L~~l~~lVlDEAh~ll-d~gf~~-- 553 (842)
.. |+.|.+++++.........+ .++|+++|..-| .|.|...-.+ ......+.++||||+|.+| |....+
T Consensus 149 ~l-Gl~v~~i~~~~~~~err~~Y---~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLI 224 (913)
T PRK13103 149 FL-GLSVGIVTPFQPPEEKRAAY---AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLI 224 (913)
T ss_pred cc-CCEEEEECCCCCHHHHHHHh---cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCcee
Confidence 75 89999998876544322222 289999999887 3444433110 1123678999999999976 321111
Q ss_pred -------------chhhhhhccc--------------------ccccce------------e----ecccCc-----ch-
Q 003178 554 -------------DVENIVDCLP--------------------RRRQSL------------L----FSATMP-----KE- 578 (842)
Q Consensus 554 -------------~i~~Il~~l~--------------------~~~q~i------------l----~SATl~-----~~- 578 (842)
.+..++..+. +.+++. + +++... ..
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~ 304 (913)
T PRK13103 225 ISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNL 304 (913)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhh
Confidence 0111111110 000000 0 000000 00
Q ss_pred ---------h----hccccceeee------ec------------------------------------------------
Q 003178 579 ---------L----VLKREHTYID------TV------------------------------------------------ 591 (842)
Q Consensus 579 ---------l----~~~~~~~~i~------~v------------------------------------------------ 591 (842)
+ .+..+..|+- .+
T Consensus 305 ~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y 384 (913)
T PRK13103 305 GLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLY 384 (913)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhc
Confidence 0 0000000000 00
Q ss_pred ---------------------ccccccccccc------cccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHH
Q 003178 592 ---------------------GLGSVETPVKI------KQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVT 644 (842)
Q Consensus 592 ---------------------~~~~~~~~~~l------~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~ 644 (842)
.+.....|.+. ....++.....|+..+..-+.... ..+.++||-+.|....
T Consensus 385 ~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~--~~GrPVLVGT~SVe~S 462 (913)
T PRK13103 385 NKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECM--ALGRPVLVGTATIETS 462 (913)
T ss_pred chhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCCHHHH
Confidence 00000000000 011122334556666666665544 3567999999999999
Q ss_pred HHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhc-ceEEEEeccccccCCCCC-------------------------
Q 003178 645 SLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRAS-KRLILVTSDVSARGMDYP------------------------- 698 (842)
Q Consensus 645 ~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g-~~~VLVaTdv~arGlDip------------------------- 698 (842)
+.++.+|...+++.-.|++.....+-..+- ..| .-.|.|||++|+||.||.
T Consensus 463 E~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~ 539 (913)
T PRK13103 463 EHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKA 539 (913)
T ss_pred HHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHH
Confidence 999999999999998888874433222222 345 356999999999999994
Q ss_pred -------Cc-----ceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchh
Q 003178 699 -------DV-----TSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 740 (842)
Q Consensus 699 -------~V-----~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~ 740 (842)
.| =+||-...+.|..---|-.|||||-|.+|.+-.|++-.|.
T Consensus 540 ~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 540 DWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12 2688888999999999999999999999999999986553
No 131
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.67 E-value=6.6e-17 Score=163.02 Aligned_cols=171 Identities=42% Similarity=0.632 Sum_probs=131.5
Q ss_pred ccceeeeeehhhhhhhhhhcC-cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHH
Q 003178 396 AAGYIQMTRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (842)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g-~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~ 474 (842)
..++..++++|.+++..++.. +.+++.++||+|||.+++.+++..+.... ..++||++||+.++.|+...
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---------~~~~l~~~p~~~~~~~~~~~ 73 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---------GKRVLVLVPTRELAEQWAEE 73 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---------CCcEEEEeCCHHHHHHHHHH
Confidence 356778999999999999998 99999999999999998888887765432 12589999999999999999
Q ss_pred HHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccc
Q 003178 475 AIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554 (842)
Q Consensus 475 l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~ 554 (842)
+..++.... .......++.........+.....+|+++|++.+.+.+.... .....+++|||||||.+....+...
T Consensus 74 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~~~~~~~ 149 (201)
T smart00487 74 LKKLGPSLG-LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL---LELSNVDLVILDEAHRLLDGGFGDQ 149 (201)
T ss_pred HHHHhccCC-eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---cCHhHCCEEEEECHHHHhcCCcHHH
Confidence 988875432 223333444332223333333334999999999998886642 3456788999999999987567788
Q ss_pred hhhhhhcccccccceeecccCcchh
Q 003178 555 VENIVDCLPRRRQSLLFSATMPKEL 579 (842)
Q Consensus 555 i~~Il~~l~~~~q~il~SATl~~~l 579 (842)
+..++..+++..+++++|||+++..
T Consensus 150 ~~~~~~~~~~~~~~v~~saT~~~~~ 174 (201)
T smart00487 150 LEKLLKLLPKNVQLLLLSATPPEEI 174 (201)
T ss_pred HHHHHHhCCccceEEEEecCCchhH
Confidence 8888888878899999999997653
No 132
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.65 E-value=2.7e-16 Score=149.13 Aligned_cols=120 Identities=34% Similarity=0.616 Sum_probs=110.4
Q ss_pred hhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccc
Q 003178 613 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 692 (842)
Q Consensus 613 ~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~a 692 (842)
.+...+..++..... .+.++||||++...++.++..|.+.+..+..+||.++..+|..+++.|.++...||++|.+++
T Consensus 12 ~k~~~i~~~i~~~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLELLKEHLK--KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIA 89 (131)
T ss_pred HHHHHHHHHHHhccc--CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhh
Confidence 677777777776542 467999999999999999999998888999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEE
Q 003178 693 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLL 734 (842)
Q Consensus 693 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l 734 (842)
+|+|+|++++||+++.|++...|+|++||++|.|+.|.++++
T Consensus 90 ~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 90 RGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999998887754
No 133
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=4.4e-15 Score=174.94 Aligned_cols=318 Identities=19% Similarity=0.221 Sum_probs=197.6
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.++++|.-.--.+..| -|+.+.||-|||++..+|+.-..+... .|-|++..--||..=++++..++.
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~Gk-----------gVhVVTvNdYLA~RDae~mg~vy~ 144 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALTGK-----------GVIVSTVNEYLAERDAEEMGKVFN 144 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhcCC-----------ceEEEecchhhhhhhHHHHHHHHH
Confidence 5777887665555555 589999999999999999875544432 367778888999988888888877
Q ss_pred cCCceeEEEEecceeeeeccccccCCCceEEecCccch-hhhccccCCc---eEEEecceeeeeccccccc-cccccc--
Q 003178 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGL---SVRLMGLKMLVLDEADHLL-DLGFRK-- 553 (842)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrL-l~~L~~~~~~---~~~L~~l~~lVlDEAh~ll-d~gf~~-- 553 (842)
+. |++|.+...+.......... .|+|+++|..-| .+.|...... ..-...+.+.||||||.++ |....+
T Consensus 145 fL-GLsvG~i~~~~~~~~rr~aY---~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLI 220 (925)
T PRK12903 145 FL-GLSVGINKANMDPNLKREAY---ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLI 220 (925)
T ss_pred Hh-CCceeeeCCCCChHHHHHhc---cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccc
Confidence 65 89998887664433222222 389999998876 3444432110 1224578899999999876 321111
Q ss_pred -------------chhhhhhcccc-------cccceeeccc-------------Ccc--h----------h----hcccc
Q 003178 554 -------------DVENIVDCLPR-------RRQSLLFSAT-------------MPK--E----------L----VLKRE 584 (842)
Q Consensus 554 -------------~i~~Il~~l~~-------~~q~il~SAT-------------l~~--~----------l----~~~~~ 584 (842)
.+..++..+.. ..+.+.++.. +.. . + .+..+
T Consensus 221 ISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd 300 (925)
T PRK12903 221 ISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKED 300 (925)
T ss_pred ccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcC
Confidence 11111111111 0111111110 000 0 0 00000
Q ss_pred ceeee---------------------------------------------------------------------------
Q 003178 585 HTYID--------------------------------------------------------------------------- 589 (842)
Q Consensus 585 ~~~i~--------------------------------------------------------------------------- 589 (842)
..|+-
T Consensus 301 ~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~ 380 (925)
T PRK12903 301 VEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFID 380 (925)
T ss_pred CceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHH
Confidence 00000
Q ss_pred ecccccccccccc-----c-ccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhh
Q 003178 590 TVGLGSVETPVKI-----K-QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYS 663 (842)
Q Consensus 590 ~v~~~~~~~~~~l-----~-~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg 663 (842)
..++.....|.+. . ...++.....|+..+..-+.... ..+.++||.|.|....+.++..|.+.+++.-.|++
T Consensus 381 iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~--~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNA 458 (925)
T PRK12903 381 IYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVH--KKGQPILIGTAQVEDSETLHELLLEANIPHTVLNA 458 (925)
T ss_pred HhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecc
Confidence 0000000001100 0 11123334566666666665543 35679999999999999999999999999888888
Q ss_pred cCcchhhhhhhHHHhhc-ceEEEEeccccccCCCCCCcc--------eeEEecCCCChHHHHHHhhcCCCCCCCcceeEE
Q 003178 664 RKPQLYRDRISEEFRAS-KRLILVTSDVSARGMDYPDVT--------SVVQVGIPPDREQYIHRLGRTGREGKEGEGVLL 734 (842)
Q Consensus 664 ~~~~~~R~~v~~~F~~g-~~~VLVaTdv~arGlDip~V~--------~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l 734 (842)
.- .+++..+-. ..| ...|.|||++|+||.||.--. |||....|.|..---|..|||||.|.+|.+-.|
T Consensus 459 k~--~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 459 KQ--NAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cc--hhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 63 333333322 455 467999999999999996322 899999999998889999999999999999998
Q ss_pred eccchh
Q 003178 735 LAPWEE 740 (842)
Q Consensus 735 l~~~E~ 740 (842)
++-.|.
T Consensus 536 lSLeD~ 541 (925)
T PRK12903 536 ISLDDQ 541 (925)
T ss_pred EecchH
Confidence 886553
No 134
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.61 E-value=5.2e-15 Score=183.84 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=87.1
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhh--hHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccc
Q 003178 615 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKM--NVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 692 (842)
Q Consensus 615 ~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~--~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~a 692 (842)
...+...|...+.. .++++|||++|.+..+.++..|..... .+..+.-+++...|..+++.|+.++..||++|..+.
T Consensus 737 ~~~la~~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFw 815 (928)
T PRK08074 737 IEEVAAYIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCccc
Confidence 34555555554432 456999999999999999999975422 122223344445689999999999999999999999
Q ss_pred cCCCCCC--cceeEEecCCC------------------------------ChHHHHHHhhcCCCCCCCcceeEEecc
Q 003178 693 RGMDYPD--VTSVVQVGIPP------------------------------DREQYIHRLGRTGREGKEGEGVLLLAP 737 (842)
Q Consensus 693 rGlDip~--V~~VI~yd~P~------------------------------s~~~yiQRiGRaGR~G~~G~~i~ll~~ 737 (842)
.|||+|+ +++||...+|. ....+.|-+||.-|....--+++++.+
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~ 892 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDR 892 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecC
Confidence 9999998 57888877663 122336899999998754334555554
No 135
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.59 E-value=6.8e-16 Score=133.96 Aligned_cols=78 Identities=29% Similarity=0.519 Sum_probs=75.2
Q ss_pred HHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCC
Q 003178 649 LLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREG 726 (842)
Q Consensus 649 ~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G 726 (842)
++|+..++.+..+||++++.+|..+++.|+++...|||||+++++|+|+|++++||++++|+++..|+|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999976
No 136
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.58 E-value=1.1e-14 Score=173.48 Aligned_cols=337 Identities=16% Similarity=0.210 Sum_probs=210.1
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhhhhc----CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccC
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLE----GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP 454 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~----g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~ 454 (842)
..|..+..+|.-+.. ..++.+|.+.++.++. +.++|+...+|-|||+. .+..|..+.....- .
T Consensus 354 p~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~~------~ 420 (1373)
T KOG0384|consen 354 PRFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQI------H 420 (1373)
T ss_pred hhHHHhhcCcccccc------chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhhc------c
Confidence 345555555544433 6799999999998764 78999999999999986 55555555544311 1
Q ss_pred ceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccc---cccCC-----CceEEecCccchhhhccccC
Q 003178 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQR---RLESD-----PCQILVATPGRLLDHIENKS 526 (842)
Q Consensus 455 ~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~---~l~~~-----~~~IIVaTPgrLl~~L~~~~ 526 (842)
|+ .||++|.-.+ .-|.+.+..+. .+++++..|........+ ..... .++++++|.+.++.--..
T Consensus 421 gp-flvvvplst~-~~W~~ef~~w~----~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~-- 492 (1373)
T KOG0384|consen 421 GP-FLVVVPLSTI-TAWEREFETWT----DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE-- 492 (1373)
T ss_pred CC-eEEEeehhhh-HHHHHHHHHHh----hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh--
Confidence 21 5888997655 34566666664 567777777654322111 11111 379999999988642111
Q ss_pred CceEEEecceeeeecccccccccccccchhhhhhcccccccceeecccCcch-h--------------------------
Q 003178 527 GLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE-L-------------------------- 579 (842)
Q Consensus 527 ~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~-l-------------------------- 579 (842)
+.--.+.+++|||||+|-+.. ..+...+..+.-. .-|++|.|+-.+ +
T Consensus 493 ---L~~i~w~~~~vDeahrLkN~~--~~l~~~l~~f~~~-~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~ 566 (1373)
T KOG0384|consen 493 ---LSKIPWRYLLVDEAHRLKNDE--SKLYESLNQFKMN-HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFD 566 (1373)
T ss_pred ---hccCCcceeeecHHhhcCchH--HHHHHHHHHhccc-ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhc
Confidence 111256789999999987532 1111122222111 124444442111 0
Q ss_pred ----------------------------------------------------hccccceeeeecccccccccccc-----
Q 003178 580 ----------------------------------------------------VLKREHTYIDTVGLGSVETPVKI----- 602 (842)
Q Consensus 580 ----------------------------------------------------~~~~~~~~i~~v~~~~~~~~~~l----- 602 (842)
.+.+++..+..-.-.......++
T Consensus 567 ~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELk 646 (1373)
T KOG0384|consen 567 EETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELK 646 (1373)
T ss_pred chhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHH
Confidence 00000000000000000000000
Q ss_pred ---cccccccCchhhH----------HHH-------------HHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhh
Q 003178 603 ---KQSCLVAPHELHF----------QIL-------------HHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKM 656 (842)
Q Consensus 603 ---~~~~~~~~~~~k~----------~~L-------------~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~ 656 (842)
.+.|++.+.+.+. ..| ..+|... ...++++|||..-..+.+.|+++|...++
T Consensus 647 KccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rL--k~~GHrVLIFSQMVRmLDIL~eYL~~r~y 724 (1373)
T KOG0384|consen 647 KCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRL--KEGGHRVLIFSQMVRMLDILAEYLSLRGY 724 (1373)
T ss_pred HhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHH--hcCCceEEEhHHHHHHHHHHHHHHHHcCC
Confidence 1122222222111 112 2222221 23568999999999999999999999999
Q ss_pred hHHHHhhcCcchhhhhhhHHHhh---cceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCc--ce
Q 003178 657 NVREMYSRKPQLYRDRISEEFRA---SKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEG--EG 731 (842)
Q Consensus 657 ~v~~lhg~~~~~~R~~v~~~F~~---g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G--~~ 731 (842)
++-.|.|.+....|..++..|.. ....+|+||.+.+.|||+-..+.||.||-.+||..-+|..-||.|.|+.. ..
T Consensus 725 pfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnV 804 (1373)
T KOG0384|consen 725 PFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNV 804 (1373)
T ss_pred cceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEE
Confidence 99999999999999999999984 45779999999999999999999999999999999999999999999755 46
Q ss_pred eEEecc--chhhhhc
Q 003178 732 VLLLAP--WEEYFLD 744 (842)
Q Consensus 732 i~ll~~--~E~~~l~ 744 (842)
|.|++. .|+.+++
T Consensus 805 YRLVTk~TvEeEilE 819 (1373)
T KOG0384|consen 805 YRLVTKNTVEEEILE 819 (1373)
T ss_pred EEEecCCchHHHHHH
Confidence 667775 3444443
No 137
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.57 E-value=2.9e-14 Score=169.12 Aligned_cols=129 Identities=22% Similarity=0.206 Sum_probs=92.9
Q ss_pred eeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhc
Q 003178 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (842)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~ 481 (842)
++++|.-+ .+.-++.-|+.+.||.|||+++.+|++-..+... .|.|++++..||.+-++++..++..
T Consensus 77 ~ydvQlig--~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~-----------~VhVvT~NdyLA~RD~e~m~pvy~~ 143 (870)
T CHL00122 77 HFDVQLIG--GLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGK-----------GVHIVTVNDYLAKRDQEWMGQIYRF 143 (870)
T ss_pred CCchHhhh--hHhhcCCccccccCCCCchHHHHHHHHHHHhcCC-----------ceEEEeCCHHHHHHHHHHHHHHHHH
Confidence 66777544 4444567899999999999999999964444321 4889999999999999999999887
Q ss_pred CCceeEEEEecceeeeeccccccCCCceEEecCccchh-hhccccCCc---eEEEecceeeeeccccccc
Q 003178 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLL-DHIENKSGL---SVRLMGLKMLVLDEADHLL 547 (842)
Q Consensus 482 ~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl-~~L~~~~~~---~~~L~~l~~lVlDEAh~ll 547 (842)
. |++|.++.++.+........ .|+|+++|..-|- +.|...-.. ......+.+.||||||.++
T Consensus 144 L-GLsvg~i~~~~~~~err~aY---~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 144 L-GLTVGLIQEGMSSEERKKNY---LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred c-CCceeeeCCCCChHHHHHhc---CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 6 89999888776654322222 3799999997653 444322110 1124568899999999876
No 138
>COG4889 Predicted helicase [General function prediction only]
Probab=99.55 E-value=7.3e-15 Score=168.60 Aligned_cols=334 Identities=18% Similarity=0.202 Sum_probs=195.8
Q ss_pred ccccCCCchhHhhhcccceeeeeehhhhhhhhhhcC----cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCce
Q 003178 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG----KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (842)
Q Consensus 381 F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g----~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 456 (842)
|+.+.. .++...|.-..-.+|+|+|++||.+.++| ...=+.+.+|+|||++ .|-+.+.+...
T Consensus 142 W~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfT-sLkisEala~~------------ 207 (1518)
T COG4889 142 WDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFT-SLKISEALAAA------------ 207 (1518)
T ss_pred hhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccch-HHHHHHHHhhh------------
Confidence 444433 34444454445567999999999998875 2344668899999998 55566666542
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccc------------------------cCCCceEEe
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRL------------------------ESDPCQILV 512 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l------------------------~~~~~~IIV 512 (842)
++|+|+|+..|..|..++...--. ..+....++.+.........+ +..+--|++
T Consensus 208 ~iL~LvPSIsLLsQTlrew~~~~~--l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvF 285 (1518)
T COG4889 208 RILFLVPSISLLSQTLREWTAQKE--LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVF 285 (1518)
T ss_pred heEeecchHHHHHHHHHHHhhccC--ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEE
Confidence 699999999999998877655422 245555555554433221111 112456888
Q ss_pred cCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhhccc-----ccccceeecccCcch---h-----
Q 003178 513 ATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP-----RRRQSLLFSATMPKE---L----- 579 (842)
Q Consensus 513 aTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~-----~~~q~il~SATl~~~---l----- 579 (842)
+|+..|...-... ..-+..+++||.||||+-........=..-+..+. +..+.+.|+||+.-- .
T Consensus 286 sTYQSl~~i~eAQ---e~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAk 362 (1518)
T COG4889 286 STYQSLPRIKEAQ---EAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAK 362 (1518)
T ss_pred EcccchHHHHHHH---HcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhh
Confidence 8988886554322 12246789999999999653221111111111111 123457888885211 0
Q ss_pred -------------hcc-----------------ccceeeeecccccccccccccccccccCc-hhhHHHHHHH------H
Q 003178 580 -------------VLK-----------------REHTYIDTVGLGSVETPVKIKQSCLVAPH-ELHFQILHHL------L 622 (842)
Q Consensus 580 -------------~~~-----------------~~~~~i~~v~~~~~~~~~~l~~~~~~~~~-~~k~~~L~~l------L 622 (842)
... .++..+. ..+...... ...+.....+. ...++....+ |
T Consensus 363 d~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmv-laVd~~~i~-~~~~~~~~~~~~~L~~dd~~kIvG~wnGl 440 (1518)
T COG4889 363 DHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMV-LAVDKEVIA-GVLQSVLSGPSKGLALDDVSKIVGCWNGL 440 (1518)
T ss_pred hccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEE-EEechhhhh-hhhhhhccCcccccchhhhhhhhhhhhhh
Confidence 000 0000000 000000000 00011111111 1112222111 1
Q ss_pred h-hhh----------cCCCCceEEEEecchhHHHHHHHHHHHH---------------hhhHHHHhhcCcchhhhhhhH-
Q 003178 623 K-EHI----------LGTPDYKVIVFCSTGMVTSLLYLLLREM---------------KMNVREMYSRKPQLYRDRISE- 675 (842)
Q Consensus 623 ~-~~~----------~~~~~~kiIVF~~s~~~~~~l~~~L~~~---------------~~~v~~lhg~~~~~~R~~v~~- 675 (842)
. ... ...+..+.|-||.+.+....++..+... .+.+....|.|...+|...+.
T Consensus 441 akr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l 520 (1518)
T COG4889 441 AKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLEL 520 (1518)
T ss_pred hhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhc
Confidence 1 111 0112346789999988888877766532 245666778899988865543
Q ss_pred --HHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCC-CcceeEEe
Q 003178 676 --EFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGK-EGEGVLLL 735 (842)
Q Consensus 676 --~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~-~G~~i~ll 735 (842)
.|....++||---..++.|||+|.++.||.+++-.+.-+.+|.+||.-|... ...+|+++
T Consensus 521 ~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 521 KNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred cCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 3566789999988999999999999999999999999999999999999642 23455544
No 139
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.53 E-value=5.9e-14 Score=166.83 Aligned_cols=311 Identities=15% Similarity=0.184 Sum_probs=207.0
Q ss_pred eeeehhhhhhhhhhc-CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhh
Q 003178 401 QMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~-g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~ 479 (842)
...|+|.++++.+.+ +++|+|.||+|||||.|+-+.++. ..+-.++++++|.-+.+..+++.+.+-+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------------~~~~~~~vyi~p~~~i~~~~~~~w~~~f 1210 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------------PDTIGRAVYIAPLEEIADEQYRDWEKKF 1210 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------------CccceEEEEecchHHHHHHHHHHHHHhh
Confidence 458999999998876 568899999999999987776653 1123479999999999999988887777
Q ss_pred hcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccc-----
Q 003178 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD----- 554 (842)
Q Consensus 480 ~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~----- 554 (842)
....|..+..++|...... ..+. . .+|+|+||+++- .++ ....+++.|.||+|.+.+.. +..
T Consensus 1211 ~~~~G~~~~~l~ge~s~~l--kl~~-~-~~vii~tpe~~d-~lq-------~iQ~v~l~i~d~lh~igg~~-g~v~evi~ 1277 (1674)
T KOG0951|consen 1211 SKLLGLRIVKLTGETSLDL--KLLQ-K-GQVIISTPEQWD-LLQ-------SIQQVDLFIVDELHLIGGVY-GAVYEVIC 1277 (1674)
T ss_pred ccccCceEEecCCccccch--HHhh-h-cceEEechhHHH-HHh-------hhhhcceEeeehhhhhcccC-CceEEEEe
Confidence 7777888888888876543 2222 2 599999999964 332 24578999999999987432 222
Q ss_pred -hhhhhhcccccccceeecccCcchhhc--cccceeeeeccccccccccccccc-ccccCchhhH----HHHHHHHhhhh
Q 003178 555 -VENIVDCLPRRRQSLLFSATMPKELVL--KREHTYIDTVGLGSVETPVKIKQS-CLVAPHELHF----QILHHLLKEHI 626 (842)
Q Consensus 555 -i~~Il~~l~~~~q~il~SATl~~~l~~--~~~~~~i~~v~~~~~~~~~~l~~~-~~~~~~~~k~----~~L~~lL~~~~ 626 (842)
+..|...+-++.+++.+|..+.+.-.+ .......+. .......|..+... +-........ ......+..+.
T Consensus 1278 S~r~ia~q~~k~ir~v~ls~~lana~d~ig~s~~~v~Nf-~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a 1356 (1674)
T KOG0951|consen 1278 SMRYIASQLEKKIRVVALSSSLANARDLIGASSSGVFNF-SPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA 1356 (1674)
T ss_pred eHHHHHHHHHhheeEEEeehhhccchhhccccccceeec-CcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh
Confidence 344555566778899998887765221 111111111 11112222222211 1111112211 12233334443
Q ss_pred cCCCCceEEEEecchhHHHHHHHHHHHH------------------------hhhHHHHhhcCcchhhhhhhHHHhhcce
Q 003178 627 LGTPDYKVIVFCSTGMVTSLLYLLLREM------------------------KMNVREMYSRKPQLYRDRISEEFRASKR 682 (842)
Q Consensus 627 ~~~~~~kiIVF~~s~~~~~~l~~~L~~~------------------------~~~v~~lhg~~~~~~R~~v~~~F~~g~~ 682 (842)
..+.+.+||+++++.|..++.-|-.. ...|. |.+++..+...+...|..|.+
T Consensus 1357 --~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i 1432 (1674)
T KOG0951|consen 1357 --GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAI 1432 (1674)
T ss_pred --cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcE
Confidence 24568999999999998876654321 12233 889999999999999999999
Q ss_pred EEEEeccccccCCCCCCcceeE----Eec------CCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhcc
Q 003178 683 LILVTSDVSARGMDYPDVTSVV----QVG------IPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDD 745 (842)
Q Consensus 683 ~VLVaTdv~arGlDip~V~~VI----~yd------~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~ 745 (842)
.|+|...- ..|+-...--+|+ .|| .+..+....|++|+|.| .|.|+++.......|+++
T Consensus 1433 ~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykk 1501 (1674)
T KOG0951|consen 1433 QVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKK 1501 (1674)
T ss_pred EEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHH
Confidence 99998766 7777664433333 233 35568899999999998 569999998766655543
No 140
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.51 E-value=1.5e-13 Score=161.78 Aligned_cols=318 Identities=15% Similarity=0.168 Sum_probs=190.7
Q ss_pred eeeehhhhhhhhhhc---Cc-------ceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHH
Q 003178 401 QMTRVQEATLSACLE---GK-------DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~---g~-------dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Q 470 (842)
.|+|+|.+.+.-+.. |. -+|++-..|+|||+. +|+.+..+++..+.....- -++|||+| ..|+.-
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~~~---~k~lVV~P-~sLv~n 312 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKPLI---NKPLVVAP-SSLVNN 312 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccccc---cccEEEcc-HHHHHH
Confidence 588999999876543 22 357777889999997 7778888877654421111 15799999 578899
Q ss_pred HHHHHHHhhhcCCceeEEEEecceeeee-cc-----ccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccc
Q 003178 471 IAAEAIALLKNHDGIGVLTLVGGTRFKV-DQ-----RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (842)
Q Consensus 471 i~~~l~~l~~~~~~i~v~~l~Gg~~~~~-~~-----~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh 544 (842)
|+++|.++...+ .+....++|..+... .. .....-..-|++.+.+.+.++... +.+..+++||+||.|
T Consensus 313 WkkEF~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-----il~~~~glLVcDEGH 386 (776)
T KOG0390|consen 313 WKKEFGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-----ILLIRPGLLVCDEGH 386 (776)
T ss_pred HHHHHHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH-----HhcCCCCeEEECCCC
Confidence 999999998752 566667777665200 00 000111245777777777655432 234578999999999
Q ss_pred cccccccccchhhhhhcccccccceeecccCcchh-------hccccceeeeecc-------------------------
Q 003178 545 HLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL-------VLKREHTYIDTVG------------------------- 592 (842)
Q Consensus 545 ~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l-------~~~~~~~~i~~v~------------------------- 592 (842)
++-+.. ..+...+..+. ..+-|++|.|+-.+- .....+.++....
T Consensus 387 rlkN~~--s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~ 463 (776)
T KOG0390|consen 387 RLKNSD--SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER 463 (776)
T ss_pred Cccchh--hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh
Confidence 976542 23333444443 344578899975440 0001111111000
Q ss_pred ---------------------cccccccccccccccccCchh-hHHHHHHHHh-------------------hhh-----
Q 003178 593 ---------------------LGSVETPVKIKQSCLVAPHEL-HFQILHHLLK-------------------EHI----- 626 (842)
Q Consensus 593 ---------------------~~~~~~~~~l~~~~~~~~~~~-k~~~L~~lL~-------------------~~~----- 626 (842)
+.....|.. ..+++++.... ....+..++. ..+
T Consensus 464 ~~rl~eL~~~t~~fi~rrt~~il~k~LP~k-~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L 542 (776)
T KOG0390|consen 464 EERLQELRELTNKFILRRTGDILLKYLPGK-YEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSL 542 (776)
T ss_pred HHHHHHHHHHHHhheeecccchhhhhCCCc-eeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHh
Confidence 000001111 11122222211 1111111110 000
Q ss_pred c-------C-----C--------------------------------CCceEE---EEecchhHHHHHHHHH-HHHhhhH
Q 003178 627 L-------G-----T--------------------------------PDYKVI---VFCSTGMVTSLLYLLL-REMKMNV 658 (842)
Q Consensus 627 ~-------~-----~--------------------------------~~~kiI---VF~~s~~~~~~l~~~L-~~~~~~v 658 (842)
. . . ...+++ |++....++..+.+.+ +-.|+.+
T Consensus 543 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~ 622 (776)
T KOG0390|consen 543 LLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEV 622 (776)
T ss_pred hcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceE
Confidence 0 0 0 001222 2333333333333333 3347889
Q ss_pred HHHhhcCcchhhhhhhHHHhhcc---eEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeE
Q 003178 659 REMYSRKPQLYRDRISEEFRASK---RLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVL 733 (842)
Q Consensus 659 ~~lhg~~~~~~R~~v~~~F~~g~---~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ 733 (842)
+.+||.|+..+|..+++.|.+-. .-+|++|-+.+.||++=+.+.||.||+++||+.-.|.++|+.|.|+.-.|++
T Consensus 623 ~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~i 700 (776)
T KOG0390|consen 623 LRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYI 700 (776)
T ss_pred EEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEE
Confidence 99999999999999999998543 3456678899999999999999999999999999999999999998766654
No 141
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.51 E-value=2.1e-13 Score=160.34 Aligned_cols=88 Identities=15% Similarity=0.122 Sum_probs=63.8
Q ss_pred HHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhH-HHHhhcCcchhhhhhhHHHhhc----ceEEEEeccccc
Q 003178 618 LHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNV-REMYSRKPQLYRDRISEEFRAS----KRLILVTSDVSA 692 (842)
Q Consensus 618 L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v-~~lhg~~~~~~R~~v~~~F~~g----~~~VLVaTdv~a 692 (842)
+...+...+. ..+++++|.+.|......++..|.. .+.. ..+.|..+ .+..++++|++. ...||++|+.+.
T Consensus 458 ~~~~~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~-~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfw 533 (636)
T TIGR03117 458 VSLSTAAILR-KAQGGTLVLTTAFSHISAIGQLVEL-GIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAW 533 (636)
T ss_pred HHHHHHHHHH-HcCCCEEEEechHHHHHHHHHHHHh-hcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccc
Confidence 3344444333 2467999999999999999999865 2222 22333221 356789999974 789999999999
Q ss_pred cCCCC--------CC--cceeEEecCC
Q 003178 693 RGMDY--------PD--VTSVVQVGIP 709 (842)
Q Consensus 693 rGlDi--------p~--V~~VI~yd~P 709 (842)
.|||+ |+ +++||...+|
T Consensus 534 eGvDv~~~~~~p~~G~~Ls~ViI~kLP 560 (636)
T TIGR03117 534 TGIDLTHKPVSPDKDNLLTDLIITCAP 560 (636)
T ss_pred cccccCCccCCCCCCCcccEEEEEeCC
Confidence 99999 34 8899988777
No 142
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=3.9e-13 Score=159.27 Aligned_cols=129 Identities=22% Similarity=0.237 Sum_probs=93.8
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.++++|. +-.+.-+.--|+.+.||-|||+++.+|++-..+... .|-|++++..||..=++++..++.
T Consensus 85 r~ydVQl--iGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~Gk-----------gVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 85 RHFDVQL--IGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGK-----------GVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred CcchhHH--HhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCC-----------CeEEEeCCHHHHHhHHHHHHHHHH
Confidence 3566664 444444566789999999999999999986555433 488999999999999999999888
Q ss_pred cCCceeEEEEecceeeeeccccccCCCceEEecCccch-----hhhccccCCceEEEecceeeeeccccccc
Q 003178 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-----LDHIENKSGLSVRLMGLKMLVLDEADHLL 547 (842)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrL-----l~~L~~~~~~~~~L~~l~~lVlDEAh~ll 547 (842)
.. |+.|.++.++......... -.|+|+++|+..| .+.+..... ......+.+.||||||.+|
T Consensus 152 ~L-GLtvg~i~~~~~~~err~a---Y~~DItYgTn~e~gFDYLRDnm~~~~~-~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 152 FL-GLSVGLIQQDMSPEERKKN---YACDITYATNSELGFDYLRDNMATDIS-EVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred Hh-CCeEEEECCCCChHHHHHh---cCCCeEEecCCcccccchhhhhccccc-ccccCccceEEEeccccee
Confidence 76 8999988776544322222 2489999999988 344432211 1234678999999999876
No 143
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.47 E-value=7.5e-14 Score=132.39 Aligned_cols=144 Identities=44% Similarity=0.613 Sum_probs=100.5
Q ss_pred cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceee
Q 003178 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496 (842)
Q Consensus 417 ~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~ 496 (842)
+++++.++||+|||++++..+........ ..+++|++|++.|+.|+.+.+...... .+.+..+.+....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~---------~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 69 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK---------GGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSI 69 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc---------CCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcch
Confidence 46899999999999987776665544311 126999999999999999988887653 4556666665443
Q ss_pred eeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhhcccccccceeecccC
Q 003178 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (842)
Q Consensus 497 ~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl 575 (842)
.... .......+|+++|++.+...+.... .....+++|||||+|.+....+...............+++++|||+
T Consensus 70 ~~~~-~~~~~~~~i~i~t~~~~~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 70 KQQE-KLLSGKTDIVVGTPGRLLDELERLK---LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hHHH-HHhcCCCCEEEECcHHHHHHHHcCC---cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 3221 1123457999999999987765442 2245688999999999886543333222344456678899999995
No 144
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.45 E-value=1.9e-13 Score=162.32 Aligned_cols=322 Identities=20% Similarity=0.261 Sum_probs=197.4
Q ss_pred eeeehhhhhhhhhh--c--CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 401 QMTRVQEATLSACL--E--GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 401 ~~t~iQ~~aI~~il--~--g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
.++.+|++.+.++. + +-+.|+|..+|-|||+..+--+....++.+.... .....-.||+|| ..|+--|..++.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~--e~~~~PSLIVCP-sTLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESS--EFNRLPSLIVCP-STLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccch--hhccCCeEEECC-chhhhHHHHHHH
Confidence 46778999988753 2 3478999999999999743333333333321111 112223799999 478899999998
Q ss_pred HhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchh
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~ 556 (842)
+++.. +.|...+|+...+...+.-.+ ..+|+|++++.+..-+..- .-..+.|+|+||-|-|-+.. ..+.
T Consensus 1052 kf~pf---L~v~~yvg~p~~r~~lR~q~~-~~~iiVtSYDv~RnD~d~l-----~~~~wNYcVLDEGHVikN~k--tkl~ 1120 (1549)
T KOG0392|consen 1052 KFFPF---LKVLQYVGPPAERRELRDQYK-NANIIVTSYDVVRNDVDYL-----IKIDWNYCVLDEGHVIKNSK--TKLT 1120 (1549)
T ss_pred Hhcch---hhhhhhcCChHHHHHHHhhcc-ccceEEeeHHHHHHHHHHH-----HhcccceEEecCcceecchH--HHHH
Confidence 88654 567777776554433332222 3799999998875322110 01257899999999876532 2222
Q ss_pred hhhhcccccccceeecccCcch----------------------------------------------------------
Q 003178 557 NIVDCLPRRRQSLLFSATMPKE---------------------------------------------------------- 578 (842)
Q Consensus 557 ~Il~~l~~~~q~il~SATl~~~---------------------------------------------------------- 578 (842)
+.++.+..+. .+++|.|+-.+
T Consensus 1121 kavkqL~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqV 1199 (1549)
T KOG0392|consen 1121 KAVKQLRANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQV 1199 (1549)
T ss_pred HHHHHHhhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHH
Confidence 2223332222 23345552111
Q ss_pred -------------------hhccc--------cceeeeec-------------ccccccc-ccc----c------ccc-c
Q 003178 579 -------------------LVLKR--------EHTYIDTV-------------GLGSVET-PVK----I------KQS-C 606 (842)
Q Consensus 579 -------------------l~~~~--------~~~~i~~v-------------~~~~~~~-~~~----l------~~~-~ 606 (842)
+.-.. ...|.+.+ ......+ ... + ..+ .
T Consensus 1200 LPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpa 1279 (1549)
T KOG0392|consen 1200 LPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPA 1279 (1549)
T ss_pred HHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcc
Confidence 00000 00000000 0000000 000 0 000 0
Q ss_pred cc------------------------cCchhhHHHHHHHHhhhhcC------------CCCceEEEEecchhHHHHHHHH
Q 003178 607 LV------------------------APHELHFQILHHLLKEHILG------------TPDYKVIVFCSTGMVTSLLYLL 650 (842)
Q Consensus 607 ~~------------------------~~~~~k~~~L~~lL~~~~~~------------~~~~kiIVF~~s~~~~~~l~~~ 650 (842)
++ ..+.-|+..|..+|.+.-.. ..++++||||.-+.+.+.+.+-
T Consensus 1280 Lvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekD 1359 (1549)
T KOG0392|consen 1280 LVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKD 1359 (1549)
T ss_pred eeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHH
Confidence 00 01122445555555442211 1356999999999999999888
Q ss_pred HHHHh---hhHHHHhhcCcchhhhhhhHHHhhc-ceEEEE-eccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCC
Q 003178 651 LREMK---MNVREMYSRKPQLYRDRISEEFRAS-KRLILV-TSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGRE 725 (842)
Q Consensus 651 L~~~~---~~v~~lhg~~~~~~R~~v~~~F~~g-~~~VLV-aTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~ 725 (842)
|-+.- +.+..+.|..++.+|.++.++|.++ .++||+ +|-|.+-|+|+.+.+.||.++-.|||..-.|.+-||.|.
T Consensus 1360 L~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRI 1439 (1549)
T KOG0392|consen 1360 LFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRI 1439 (1549)
T ss_pred HhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhh
Confidence 76542 3455899999999999999999999 678765 889999999999999999999999999999999999999
Q ss_pred CCCcc--eeEEecc
Q 003178 726 GKEGE--GVLLLAP 737 (842)
Q Consensus 726 G~~G~--~i~ll~~ 737 (842)
|++-. .|.|++.
T Consensus 1440 GQKrvVNVyRlItr 1453 (1549)
T KOG0392|consen 1440 GQKRVVNVYRLITR 1453 (1549)
T ss_pred cCceeeeeeeehhc
Confidence 97653 4455554
No 145
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.42 E-value=8.9e-13 Score=159.53 Aligned_cols=121 Identities=23% Similarity=0.258 Sum_probs=85.3
Q ss_pred hhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcce-EEEEecccc
Q 003178 613 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKR-LILVTSDVS 691 (842)
Q Consensus 613 ~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~-~VLVaTdv~ 691 (842)
.....+...+...+... ++++||||+|......++..+...... ..+-......+..+++.|+.+.- .++|+|..+
T Consensus 462 ~~~~~~~~~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~~--~~v~~q~~~~~~~~l~~f~~~~~~~~lv~~gsf 538 (654)
T COG1199 462 ELLAKLAAYLREILKAS-PGGVLVLFPSYEYLKRVAERLKDERST--LPVLTQGEDEREELLEKFKASGEGLILVGGGSF 538 (654)
T ss_pred HHHHHHHHHHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcCcc--ceeeecCCCcHHHHHHHHHHhcCCeEEEeeccc
Confidence 34445555555555444 449999999999999999999875443 22233334456688899987665 999999999
Q ss_pred ccCCCCCC--cceeEEecCCC------------------------------ChHHHHHHhhcCCCCCCCcceeEEec
Q 003178 692 ARGMDYPD--VTSVVQVGIPP------------------------------DREQYIHRLGRTGREGKEGEGVLLLA 736 (842)
Q Consensus 692 arGlDip~--V~~VI~yd~P~------------------------------s~~~yiQRiGRaGR~G~~G~~i~ll~ 736 (842)
+.|||+|+ .++||..++|. ......|.+||.-|.-..--.++++.
T Consensus 539 ~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 539 WEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred cCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 99999998 57788888773 34445799999999654333333443
No 146
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.42 E-value=2.9e-13 Score=155.50 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=104.9
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcc--eEEEEecccc
Q 003178 614 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASK--RLILVTSDVS 691 (842)
Q Consensus 614 k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~--~~VLVaTdv~ 691 (842)
|+..|..+|.... ..+.++|||..-..+.+.|..+|..+++.+..|.|...-..|+.++..|...+ .-+|++|-+.
T Consensus 762 K~r~L~~LLp~~k--~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 762 KCRKLKELLPKIK--KKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hHhHHHHHHHHHh--hcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 5566666666553 34579999999999999999999999999999999999999999999999765 4568899999
Q ss_pred ccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCc--ceeEEecc
Q 003178 692 ARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEG--EGVLLLAP 737 (842)
Q Consensus 692 arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G--~~i~ll~~ 737 (842)
+-|||+...++||.||+..+|-.-.|.--||.|.|+.- ..+.|++.
T Consensus 840 G~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk 887 (941)
T KOG0389|consen 840 GFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITK 887 (941)
T ss_pred cceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEec
Confidence 99999999999999999999999999999999999644 44555554
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.41 E-value=1.9e-12 Score=156.40 Aligned_cols=118 Identities=20% Similarity=0.239 Sum_probs=81.8
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH-hhhHHHHhhcCcchhhhhhhHHHhh----cceEEEEec
Q 003178 614 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-KMNVREMYSRKPQLYRDRISEEFRA----SKRLILVTS 688 (842)
Q Consensus 614 k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~-~~~v~~lhg~~~~~~R~~v~~~F~~----g~~~VLVaT 688 (842)
....+...|...+. ..+++|||++|....+.++..|... +.. ...++. ..+..+++.|++ ++..||++|
T Consensus 519 ~~~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~ 592 (697)
T PRK11747 519 HTAEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGL 592 (697)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEe
Confidence 44556666665554 3446899999999999999988743 222 222342 346778877774 678899999
Q ss_pred cccccCCCCCC--cceeEEecCCC----C--------------------------hHHHHHHhhcCCCCCCCcceeEEec
Q 003178 689 DVSARGMDYPD--VTSVVQVGIPP----D--------------------------REQYIHRLGRTGREGKEGEGVLLLA 736 (842)
Q Consensus 689 dv~arGlDip~--V~~VI~yd~P~----s--------------------------~~~yiQRiGRaGR~G~~G~~i~ll~ 736 (842)
..+..|||+|+ +++||...+|. + ...+.|-+||.-|....--.++++.
T Consensus 593 ~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD 672 (697)
T PRK11747 593 QSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILD 672 (697)
T ss_pred ccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEc
Confidence 99999999998 78899888773 1 1123688899999764333444554
Q ss_pred c
Q 003178 737 P 737 (842)
Q Consensus 737 ~ 737 (842)
+
T Consensus 673 ~ 673 (697)
T PRK11747 673 R 673 (697)
T ss_pred c
Confidence 4
No 148
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.41 E-value=9.1e-13 Score=144.49 Aligned_cols=308 Identities=18% Similarity=0.219 Sum_probs=202.0
Q ss_pred eeeeehhhhhhhhhhc-CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 400 IQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~-g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
..+.|+|.+.+...++ |..+++...+|-|||+.+ -++...+...+. .||+||.. |-..|++.+..+
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA--laIA~yyraEwp----------lliVcPAs-vrftWa~al~r~ 263 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQA--LAIARYYRAEWP----------LLIVCPAS-VRFTWAKALNRF 263 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHH--HHHHHHHhhcCc----------EEEEecHH-HhHHHHHHHHHh
Confidence 3456899999887665 778999999999999963 344455555432 79999964 557788888888
Q ss_pred hhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhh
Q 003178 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (842)
Q Consensus 479 ~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~I 558 (842)
+..... +.++.++.+.-.... ....|.|.+++.|..+-.. +.-..+.+||+||.|+|-+.. ......+
T Consensus 264 lps~~p--i~vv~~~~D~~~~~~----t~~~v~ivSye~ls~l~~~-----l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~ 331 (689)
T KOG1000|consen 264 LPSIHP--IFVVDKSSDPLPDVC----TSNTVAIVSYEQLSLLHDI-----LKKEKYRVVIFDESHMLKDSK-TKRTKAA 331 (689)
T ss_pred cccccc--eEEEecccCCccccc----cCCeEEEEEHHHHHHHHHH-----HhcccceEEEEechhhhhccc-hhhhhhh
Confidence 865543 444444443321111 1246888888876543211 112357899999999987643 4446666
Q ss_pred hhcccccccceeecccCcch----hh---------ccc--------------cceeeeecc---ccc-------------
Q 003178 559 VDCLPRRRQSLLFSATMPKE----LV---------LKR--------------EHTYIDTVG---LGS------------- 595 (842)
Q Consensus 559 l~~l~~~~q~il~SATl~~~----l~---------~~~--------------~~~~i~~v~---~~~------------- 595 (842)
+..+..-..+||+|.|..-. +. +.. -..+.+..+ ...
T Consensus 332 ~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRR 411 (689)
T KOG1000|consen 332 TDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRR 411 (689)
T ss_pred hhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHH
Confidence 66676777899999996432 10 000 000000000 000
Q ss_pred ------ccccccccccccccCc-------------------------------------hhhHHHHHHHHhh--hhcCCC
Q 003178 596 ------VETPVKIKQSCLVAPH-------------------------------------ELHFQILHHLLKE--HILGTP 630 (842)
Q Consensus 596 ------~~~~~~l~~~~~~~~~-------------------------------------~~k~~~L~~lL~~--~~~~~~ 630 (842)
.+.|..-.+.+++++. ..|...+...|.. .+...+
T Consensus 412 lK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~ 491 (689)
T KOG1000|consen 412 LKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAP 491 (689)
T ss_pred HHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCC
Confidence 0111111111111110 0011112222222 122346
Q ss_pred CceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcc-eEE-EEeccccccCCCCCCcceeEEecC
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASK-RLI-LVTSDVSARGMDYPDVTSVVQVGI 708 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~-~~V-LVaTdv~arGlDip~V~~VI~yd~ 708 (842)
+.|.+|||......+.+...+++.++....+.|..+...|....+.|...+ +.| +++-.+++.|+++...+.||...+
T Consensus 492 ~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL 571 (689)
T KOG1000|consen 492 PRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAEL 571 (689)
T ss_pred CceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEe
Confidence 679999999999999999999999999999999999999999999999654 444 557778899999999999999999
Q ss_pred CCChHHHHHHhhcCCCCCCCccee
Q 003178 709 PPDREQYIHRLGRTGREGKEGEGV 732 (842)
Q Consensus 709 P~s~~~yiQRiGRaGR~G~~G~~i 732 (842)
++++.-.+|.=-|+.|.|+.....
T Consensus 572 ~wnPgvLlQAEDRaHRiGQkssV~ 595 (689)
T KOG1000|consen 572 HWNPGVLLQAEDRAHRIGQKSSVF 595 (689)
T ss_pred cCCCceEEechhhhhhccccceee
Confidence 999999999999999999755433
No 149
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.40 E-value=1.7e-13 Score=118.70 Aligned_cols=81 Identities=37% Similarity=0.591 Sum_probs=76.8
Q ss_pred HHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCC
Q 003178 646 LLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGRE 725 (842)
Q Consensus 646 ~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~ 725 (842)
.++..|...++.+..+||.++..+|..++..|+++...|||+|+++++|+|+|.+++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677877889999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 003178 726 G 726 (842)
Q Consensus 726 G 726 (842)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 150
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.39 E-value=1.9e-13 Score=137.28 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=98.0
Q ss_pred eeeehhhhhhhhhhc-------CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHH
Q 003178 401 QMTRVQEATLSACLE-------GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAA 473 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~-------g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~ 473 (842)
.|+++|.+++..+.. ++.+++.+|||||||.+++..+ ..+.. ++||++|+..|+.|+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~-~~l~~-------------~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALI-LELAR-------------KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHH-HHHHC-------------EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhh-hcccc-------------ceeEecCHHHHHHHHHH
Confidence 589999999998884 5899999999999999855433 33332 48999999999999999
Q ss_pred HHHHhhhcCCceeEEEE---------ecceeeeeccccccCCCceEEecCccchhhhccccCCc--------eEEEecce
Q 003178 474 EAIALLKNHDGIGVLTL---------VGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL--------SVRLMGLK 536 (842)
Q Consensus 474 ~l~~l~~~~~~i~v~~l---------~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~--------~~~L~~l~ 536 (842)
.+..+............ ..................+|++.|...|.......... .......+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T PF04851_consen 69 EFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFD 148 (184)
T ss_dssp HHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSES
T ss_pred HHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCC
Confidence 99766543211111000 00000011111222335789999999998765432110 11123568
Q ss_pred eeeecccccccccccccchhhhhhcccccccceeecccCc
Q 003178 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (842)
Q Consensus 537 ~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~ 576 (842)
+||+||||++....- +..++. .+...+|+||||+.
T Consensus 149 ~vI~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 149 LVIIDEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEEEETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred EEEEehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 999999999875431 344444 44566899999975
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=2e-11 Score=148.55 Aligned_cols=122 Identities=20% Similarity=0.216 Sum_probs=84.2
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhH------HHHhhcCcchhhhhhhHHHhh----cceE
Q 003178 614 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNV------REMYSRKPQLYRDRISEEFRA----SKRL 683 (842)
Q Consensus 614 k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v------~~lhg~~~~~~R~~v~~~F~~----g~~~ 683 (842)
....+...|...... .++.+|||++|....+.++..+...++.- ..+...-...++..+++.|+. +...
T Consensus 506 ~~~~l~~~i~~~~~~-~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~ga 584 (705)
T TIGR00604 506 LVRNLGELLVEFSKI-IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGA 584 (705)
T ss_pred HHHHHHHHHHHHhhc-CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCce
Confidence 344555556555443 35799999999999999999887654311 112222222467889999975 4667
Q ss_pred EEEec--cccccCCCCCC--cceeEEecCCC-Ch------------------------------HHHHHHhhcCCCCCCC
Q 003178 684 ILVTS--DVSARGMDYPD--VTSVVQVGIPP-DR------------------------------EQYIHRLGRTGREGKE 728 (842)
Q Consensus 684 VLVaT--dv~arGlDip~--V~~VI~yd~P~-s~------------------------------~~yiQRiGRaGR~G~~ 728 (842)
||+|+ ..++.|||+++ ++.||.+++|. ++ ....|.+||+=|....
T Consensus 585 vL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D 664 (705)
T TIGR00604 585 VLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDD 664 (705)
T ss_pred EEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCc
Confidence 99999 88999999998 78999999885 11 1125889999997654
Q ss_pred cceeEEec
Q 003178 729 GEGVLLLA 736 (842)
Q Consensus 729 G~~i~ll~ 736 (842)
--+++|+.
T Consensus 665 ~G~iillD 672 (705)
T TIGR00604 665 YGSIVLLD 672 (705)
T ss_pred eEEEEEEe
Confidence 44555553
No 152
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.30 E-value=3e-11 Score=144.76 Aligned_cols=125 Identities=16% Similarity=0.233 Sum_probs=99.2
Q ss_pred chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcc-eEEEEecc
Q 003178 611 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASK-RLILVTSD 689 (842)
Q Consensus 611 ~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~-~~VLVaTd 689 (842)
...|+..+..-+.... ..+.++||-+.|....+.++.+|...+++.-.|++.....+-..+.+ .|. -.|-|||+
T Consensus 610 ~~eK~~Aii~ei~~~~--~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELS--EAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHH--HCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEecc
Confidence 3456666666655544 35679999999999999999999999999999988755433333322 343 56899999
Q ss_pred ccccCCCCC--------CcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchh
Q 003178 690 VSARGMDYP--------DVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 740 (842)
Q Consensus 690 v~arGlDip--------~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~ 740 (842)
+|+||.||. +==+||-...+.|..---|-.|||||-|.+|.+-.|++-.|.
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 999999996 334788889999999999999999999999999998886553
No 153
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.25 E-value=2.2e-11 Score=133.50 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=92.6
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcc-eEE-EEeccccccCCCCCCcceeEEec
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASK-RLI-LVTSDVSARGMDYPDVTSVVQVG 707 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~-~~V-LVaTdv~arGlDip~V~~VI~yd 707 (842)
...|.|||..-..+.+.+.-.|.+.|+.++.+.|+|++..|..+++.|++.- +.| |++-.+.+.-+|+-...+|+..|
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 4458899999999999999999999999999999999999999999999763 554 55667777889999999999999
Q ss_pred CCCChHHHHHHhhcCCCCCC--CcceeEEecc
Q 003178 708 IPPDREQYIHRLGRTGREGK--EGEGVLLLAP 737 (842)
Q Consensus 708 ~P~s~~~yiQRiGRaGR~G~--~G~~i~ll~~ 737 (842)
+-++++.-+|..-|..|.|+ +=..+.|+..
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 99999999999999999884 4456666644
No 154
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.24 E-value=8.5e-12 Score=148.62 Aligned_cols=133 Identities=16% Similarity=0.095 Sum_probs=86.8
Q ss_pred eccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeee---c
Q 003178 423 AKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV---D 499 (842)
Q Consensus 423 A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~---~ 499 (842)
+.+|||||.+|+-.+ ...+..+. .+|||+|...|+.|+.+.+...++. ..+..+.++..... .
T Consensus 167 ~~~GSGKTevyl~~i-~~~l~~Gk----------~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 167 ALPGEDWARRLAAAA-AATLRAGR----------GALVVVPDQRDVDRLEAALRALLGA---GDVAVLSAGLGPADRYRR 232 (665)
T ss_pred cCCCCcHHHHHHHHH-HHHHHcCC----------eEEEEecchhhHHHHHHHHHHHcCC---CcEEEECCCCCHHHHHHH
Confidence 336999999976544 44443321 5999999999999999999988741 23555666544332 2
Q ss_pred cccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccc---cccchhhh--hhcccccccceeeccc
Q 003178 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG---FRKDVENI--VDCLPRRRQSLLFSAT 574 (842)
Q Consensus 500 ~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~g---f~~~i~~I--l~~l~~~~q~il~SAT 574 (842)
......+.+.|+|+|-.-+ ...+.++.+|||||-|.-.-.. ..-....+ +..-..+..+|+.|||
T Consensus 233 w~~~~~G~~~IViGtRSAv----------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaT 302 (665)
T PRK14873 233 WLAVLRGQARVVVGTRSAV----------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHA 302 (665)
T ss_pred HHHHhCCCCcEEEEcceeE----------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCC
Confidence 2334556689999995443 3567899999999999644211 11111222 2222346789999999
Q ss_pred Ccchh
Q 003178 575 MPKEL 579 (842)
Q Consensus 575 l~~~l 579 (842)
.+-+.
T Consensus 303 PSles 307 (665)
T PRK14873 303 RTAEA 307 (665)
T ss_pred CCHHH
Confidence 88664
No 155
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.20 E-value=4e-11 Score=144.43 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=67.7
Q ss_pred EEEecchhHHHHHHHHHHHH------hhhHHHHhhcCcchhhhhhhHHH----------------------hh----cce
Q 003178 635 IVFCSTGMVTSLLYLLLREM------KMNVREMYSRKPQLYRDRISEEF----------------------RA----SKR 682 (842)
Q Consensus 635 IVF~~s~~~~~~l~~~L~~~------~~~v~~lhg~~~~~~R~~v~~~F----------------------~~----g~~ 682 (842)
+|-+++++.+..++..|... .+.+++||+..+...|..+.+.. .+ +..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 56677788887887777654 34678899998777776655442 11 356
Q ss_pred EEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCC
Q 003178 683 LILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGK 727 (842)
Q Consensus 683 ~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~ 727 (842)
.|+|+|.+++.|+|+ +.+++| --|.++.+.+||+||+.|.|.
T Consensus 840 ~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 840 FIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred eEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhccccccc
Confidence 899999999999998 455554 346678999999999999874
No 156
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.16 E-value=3.1e-11 Score=142.06 Aligned_cols=315 Identities=16% Similarity=0.240 Sum_probs=196.7
Q ss_pred eeeehhhhhhhhhhc----CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 401 QMTRVQEATLSACLE----GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~----g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
.+.++|...+.++.+ +-+-|+...||-|||.. .+..+..+++.+... || -||+||+-.|.+ |..++.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~~------GP-~LvivPlstL~N-W~~Ef~ 464 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQMQ------GP-FLIIVPLSTLVN-WSSEFP 464 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcccC------CC-eEEeccccccCC-chhhcc
Confidence 688899999887654 34778999999999997 666777777765322 22 589999988854 344444
Q ss_pred HhhhcCCceeEEEEecceeeee-ccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccch
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKV-DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~-~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i 555 (842)
.+ .+.+......|...... ....+..+.++|+++|++.++. ...+ +.--++.++||||.|+|.+.. ..+
T Consensus 465 kW---aPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~l-LsKI~W~yMIIDEGHRmKNa~--~KL 534 (1157)
T KOG0386|consen 465 KW---APSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKAL-LSKISWKYMIIDEGHRMKNAI--CKL 534 (1157)
T ss_pred cc---ccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHH-HhccCCcceeecccccccchh--hHH
Confidence 44 45565555555433211 1122333569999999988764 1111 111256789999999986531 111
Q ss_pred hhhhhcccccccceeecccC------------------------------------------------------------
Q 003178 556 ENIVDCLPRRRQSLLFSATM------------------------------------------------------------ 575 (842)
Q Consensus 556 ~~Il~~l~~~~q~il~SATl------------------------------------------------------------ 575 (842)
...+..--.....++++.|.
T Consensus 535 t~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLR 614 (1157)
T KOG0386|consen 535 TDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLR 614 (1157)
T ss_pred HHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhh
Confidence 11111000011112222221
Q ss_pred ---------------cchh--hcc----------------ccceeeeec-c-ccccccccc------c-cccccc-----
Q 003178 576 ---------------PKEL--VLK----------------REHTYIDTV-G-LGSVETPVK------I-KQSCLV----- 608 (842)
Q Consensus 576 ---------------~~~l--~~~----------------~~~~~i~~v-~-~~~~~~~~~------l-~~~~~~----- 608 (842)
|..+ .++ ....+++.. + ......... + .+.|++
T Consensus 615 PFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~ 694 (1157)
T KOG0386|consen 615 PFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVEN 694 (1157)
T ss_pred HHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcc
Confidence 0000 000 000000000 0 000000000 0 000000
Q ss_pred -----------cCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHH
Q 003178 609 -----------APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEF 677 (842)
Q Consensus 609 -----------~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F 677 (842)
+...-|+.+|..+|-+.- ..+++++.||.-......+..+|.-.++.+..+.|.....+|...+..|
T Consensus 695 ~~~~~~~~~dL~R~sGKfELLDRiLPKLk--atgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~F 772 (1157)
T KOG0386|consen 695 SYTLHYDIKDLVRVSGKFELLDRILPKLK--ATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIF 772 (1157)
T ss_pred ccccccChhHHHHhccHHHHHHhhhHHHH--hcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHh
Confidence 111235556666655432 4578999999999999999999998899999999999999999999999
Q ss_pred hhcc---eEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEec
Q 003178 678 RASK---RLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLA 736 (842)
Q Consensus 678 ~~g~---~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~ 736 (842)
..-. ..+|++|.+.+.|+|+...+.||.||..+++..+.|+--||.|.|..-.+-++..
T Consensus 773 N~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 773 NAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred cCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeee
Confidence 8544 5678899999999999999999999999999999999999999997665554443
No 157
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.15 E-value=3e-10 Score=134.32 Aligned_cols=121 Identities=16% Similarity=0.171 Sum_probs=100.9
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcc--eEEEEeccccc
Q 003178 615 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASK--RLILVTSDVSA 692 (842)
Q Consensus 615 ~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~--~~VLVaTdv~a 692 (842)
++.|.-+|++.. ..+.++|||..-.++.+.|..+|+..|+.++.|.|...-++|...+++|.... ..+|++|...+
T Consensus 1262 LQtLAiLLqQLk--~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1262 LQTLAILLQQLK--SEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred HHHHHHHHHHHH--hcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 345555555443 35779999999999999999999999999999999999999999999999765 56788999999
Q ss_pred cCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCC--CcceeEEecc
Q 003178 693 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGK--EGEGVLLLAP 737 (842)
Q Consensus 693 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~--~G~~i~ll~~ 737 (842)
.|||+-+.+.||+||-.+|+..-.|.--||.|.|+ .=+.|.|++.
T Consensus 1340 vGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe 1386 (1958)
T KOG0391|consen 1340 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISE 1386 (1958)
T ss_pred cccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeecc
Confidence 99999999999999999998777776666666664 3467777776
No 158
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.08 E-value=4.4e-10 Score=127.63 Aligned_cols=121 Identities=13% Similarity=0.181 Sum_probs=103.7
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcce-EEEEeccccc
Q 003178 614 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKR-LILVTSDVSA 692 (842)
Q Consensus 614 k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~-~VLVaTdv~a 692 (842)
|+..|..+|...- ..+.++|+|+.-.++.+.+..+|...++....+.|.....+|..++..|....+ -+|++|.+.+
T Consensus 1029 KL~~LDeLL~kLk--aegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLK--AEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ceeeHHHHHHHhh--cCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 4455666665542 457899999999999999999999999999999999999999999999998664 4588999999
Q ss_pred cCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcc--eeEEec
Q 003178 693 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGE--GVLLLA 736 (842)
Q Consensus 693 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~--~i~ll~ 736 (842)
.|||+...+.||.||..+++..-.|..-||.|.|+.-. +|.+++
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~ 1152 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLIT 1152 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecc
Confidence 99999999999999999999999999999999996544 444444
No 159
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.07 E-value=2.2e-10 Score=133.01 Aligned_cols=310 Identities=21% Similarity=0.230 Sum_probs=191.1
Q ss_pred hhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEE
Q 003178 409 TLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVL 488 (842)
Q Consensus 409 aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~ 488 (842)
.+.++..++-++|.+.||.|||..+.--+|+.+..+.... -.-+.+..|||-.|.-+++++.+--....+-.|
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~------~~na~v~qprrisaisiaerva~er~e~~g~tv- 458 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA------SFNAVVSQPRRISAISLAERVANERGEEVGETC- 458 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccc------cccceeccccccchHHHHHHHHHhhHHhhcccc-
Confidence 4444555777889999999999988877888877654321 123678889998888888776554322111111
Q ss_pred EEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccc-cccccchhhhhhccccccc
Q 003178 489 TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQ 567 (842)
Q Consensus 489 ~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld-~gf~~~i~~Il~~l~~~~q 567 (842)
| .+...+..--... --|++||-|.|++.+.+. +..+.++|+||.|+.-- ..|...+..=+....+...
T Consensus 459 ---g-y~vRf~Sa~prpy-g~i~fctvgvllr~~e~g------lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~ 527 (1282)
T KOG0921|consen 459 ---G-YNVRFDSATPRPY-GSIMFCTVGVLLRMMENG------LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLR 527 (1282)
T ss_pred ---c-ccccccccccccc-cceeeeccchhhhhhhhc------ccccccccchhhhhhccchHHHHHHHHhhhccchhhh
Confidence 1 1111111111111 368999999999998765 45788999999997532 2233222222222334455
Q ss_pred ceeecccCcchhhccccceeee---------------------eccccc-------------cccccc--ccccccc---
Q 003178 568 SLLFSATMPKELVLKREHTYID---------------------TVGLGS-------------VETPVK--IKQSCLV--- 608 (842)
Q Consensus 568 ~il~SATl~~~l~~~~~~~~i~---------------------~v~~~~-------------~~~~~~--l~~~~~~--- 608 (842)
++++|||+...+....-..... ...+.. ...+.. -+..-..
T Consensus 528 v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd 607 (1282)
T KOG0921|consen 528 VVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDP 607 (1282)
T ss_pred hhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccCh
Confidence 6666666544321100000000 000000 000000 0000000
Q ss_pred -------------cCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH-------hhhHHHHhhcCcch
Q 003178 609 -------------APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-------KMNVREMYSRKPQL 668 (842)
Q Consensus 609 -------------~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~-------~~~v~~lhg~~~~~ 668 (842)
......+.++..++.......-.+-++||.+.-.....|...|... .+.++.+|+.+...
T Consensus 608 ~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~ 687 (1282)
T KOG0921|consen 608 SYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQ 687 (1282)
T ss_pred hhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccH
Confidence 0011123334444444444445678999999999999888887653 46789999999999
Q ss_pred hhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCC------------------CChHHHHHHhhcCCCCCCCcc
Q 003178 669 YRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------------------PDREQYIHRLGRTGREGKEGE 730 (842)
Q Consensus 669 ~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P------------------~s~~~yiQRiGRaGR~G~~G~ 730 (842)
++.++++....|..++++.|+++...+.+-++.+||..+.- .+....+||.||+||. ++|.
T Consensus 688 eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~ 766 (1282)
T KOG0921|consen 688 EQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGF 766 (1282)
T ss_pred hhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccc
Confidence 99999999999999999999999999999999998854431 2455679999999996 4788
Q ss_pred eeEEecc
Q 003178 731 GVLLLAP 737 (842)
Q Consensus 731 ~i~ll~~ 737 (842)
|..+++.
T Consensus 767 ~f~lcs~ 773 (1282)
T KOG0921|consen 767 CFHLCSR 773 (1282)
T ss_pred cccccHH
Confidence 8877763
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.96 E-value=6.1e-09 Score=123.13 Aligned_cols=284 Identities=18% Similarity=0.222 Sum_probs=164.9
Q ss_pred cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceee
Q 003178 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496 (842)
Q Consensus 417 ~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~ 496 (842)
.-.+|.||+|||||.+ ++.-+...+.. +..++|+|+-++.|+.++...++...- .++....-..+.
T Consensus 50 ~V~vVRSpMGTGKTta-Li~wLk~~l~~---------~~~~VLvVShRrSL~~sL~~rf~~~~l--~gFv~Y~d~~~~-- 115 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTA-LIRWLKDALKN---------PDKSVLVVSHRRSLTKSLAERFKKAGL--SGFVNYLDSDDY-- 115 (824)
T ss_pred CeEEEECCCCCCcHHH-HHHHHHHhccC---------CCCeEEEEEhHHHHHHHHHHHHhhcCC--Ccceeeeccccc--
Confidence 3457999999999997 33333332211 123699999999999999998876521 122211111111
Q ss_pred eeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchh------h-hhhcccccccce
Q 003178 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE------N-IVDCLPRRRQSL 569 (842)
Q Consensus 497 ~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~------~-Il~~l~~~~q~i 569 (842)
.+.....+-++++.+.|.++-. ..+.++++|||||+..++..=|.+.+. . +...+.....+|
T Consensus 116 -----~i~~~~~~rLivqIdSL~R~~~------~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI 184 (824)
T PF02399_consen 116 -----IIDGRPYDRLIVQIDSLHRLDG------SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVI 184 (824)
T ss_pred -----cccccccCeEEEEehhhhhccc------ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEE
Confidence 1111235677777777766542 235678999999999877643322222 2 223444567889
Q ss_pred eecccCcchhh-----ccc--cc-----------------eeeeeccccccc---c---------------ccccccccc
Q 003178 570 LFSATMPKELV-----LKR--EH-----------------TYIDTVGLGSVE---T---------------PVKIKQSCL 607 (842)
Q Consensus 570 l~SATl~~~l~-----~~~--~~-----------------~~i~~v~~~~~~---~---------------~~~l~~~~~ 607 (842)
++-||+..... +.. .. .+....+..... . +.......+
T Consensus 185 ~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (824)
T PF02399_consen 185 VMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAI 264 (824)
T ss_pred EecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcccccccc
Confidence 99999876621 000 00 000000000000 0 000000000
Q ss_pred ccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEe
Q 003178 608 VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVT 687 (842)
Q Consensus 608 ~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVa 687 (842)
. .........++... ..+.+|-||++|...++.+++........|..++|..+..+ + +. =++.+|++.
T Consensus 265 ~---~~~~tF~~~L~~~L---~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W~~~~VviY 332 (824)
T PF02399_consen 265 S---NDETTFFSELLARL---NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--WKKYDVVIY 332 (824)
T ss_pred c---cchhhHHHHHHHHH---hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--ccceeEEEE
Confidence 0 11112222222222 24668889999999999999999888888888887655542 2 11 256899999
Q ss_pred ccccccCCCCCCcce--eEEecCC----CChHHHHHHhhcCCCCCCCcceeEEeccc
Q 003178 688 SDVSARGMDYPDVTS--VVQVGIP----PDREQYIHRLGRTGREGKEGEGVLLLAPW 738 (842)
Q Consensus 688 Tdv~arGlDip~V~~--VI~yd~P----~s~~~yiQRiGRaGR~G~~G~~i~ll~~~ 738 (842)
|.++.-|+++....+ |+-|=-| .+..+..|++||.-... ....++++...
T Consensus 333 T~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 333 TPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred eceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 999999999965432 4444223 34556899999996554 56667766654
No 161
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.95 E-value=8e-09 Score=118.13 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=84.5
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhh--cceEE-EEeccccccCCCCCCcceeEEe
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRA--SKRLI-LVTSDVSARGMDYPDVTSVVQV 706 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~--g~~~V-LVaTdv~arGlDip~V~~VI~y 706 (842)
...+++|...-......+...|.+.|..+..+||....++|+.+++.|.. |...| |++-.+.+-|||+-+.+|+|..
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 34466666555566666677777778889999999999999999999973 43455 5566777899999999999999
Q ss_pred cCCCChHHHHHHhhcCCCCCCCcceeE
Q 003178 707 GIPPDREQYIHRLGRTGREGKEGEGVL 733 (842)
Q Consensus 707 d~P~s~~~yiQRiGRaGR~G~~G~~i~ 733 (842)
|+-|+++-=.|.+-|.-|.|+....++
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEE
Confidence 999999999999999999997665554
No 162
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.83 E-value=1.7e-09 Score=103.45 Aligned_cols=135 Identities=20% Similarity=0.261 Sum_probs=76.8
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecce
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~ 494 (842)
.|+-.++-..+|+|||.-.+.-++...+.. +.++|||.|||.+|..+++.++.. .+.+....-+.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~----------~~rvLvL~PTRvva~em~~aL~~~-----~~~~~t~~~~~ 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR----------RLRVLVLAPTRVVAEEMYEALKGL-----PVRFHTNARMR 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT----------T--EEEEESSHHHHHHHHHHTTTS-----SEEEESTTSS-
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc----------cCeEEEecccHHHHHHHHHHHhcC-----CcccCceeeec
Confidence 355668899999999997444444444333 247999999999999888766433 23322111110
Q ss_pred eeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccc--cccchhhhhhcccccccceeec
Q 003178 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG--FRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 495 ~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~g--f~~~i~~Il~~l~~~~q~il~S 572 (842)
-..++.-|-|+|.+.+...+.+. ..+.++++||+||||-.-... ++..+...... ....+|++|
T Consensus 68 --------~~~g~~~i~vMc~at~~~~~~~p----~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~--g~~~~i~mT 133 (148)
T PF07652_consen 68 --------THFGSSIIDVMCHATYGHFLLNP----CRLKNYDVIIMDECHFTDPTSIAARGYLRELAES--GEAKVIFMT 133 (148)
T ss_dssp -----------SSSSEEEEEHHHHHHHHHTS----SCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT--TS-EEEEEE
T ss_pred --------cccCCCcccccccHHHHHHhcCc----ccccCccEEEEeccccCCHHHHhhheeHHHhhhc--cCeeEEEEe
Confidence 11233567788988887776553 235689999999999743221 22222222111 235689999
Q ss_pred ccCcch
Q 003178 573 ATMPKE 578 (842)
Q Consensus 573 ATl~~~ 578 (842)
||.|-.
T Consensus 134 ATPPG~ 139 (148)
T PF07652_consen 134 ATPPGS 139 (148)
T ss_dssp SS-TT-
T ss_pred CCCCCC
Confidence 999865
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.79 E-value=1.3e-08 Score=110.74 Aligned_cols=146 Identities=18% Similarity=0.223 Sum_probs=83.2
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEeccee
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~ 495 (842)
.+.+|++..+|+|||+. .+.++..+........ .-.+|||+|. .+..||..++.+++... .+.+..+.|...
T Consensus 25 ~~g~lL~de~GlGKT~~-~i~~~~~l~~~~~~~~-----~~~~LIv~P~-~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~ 96 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTIT-AIALISYLKNEFPQRG-----EKKTLIVVPS-SLLSQWKEEIEKWFDPD-SLRVIIYDGDSE 96 (299)
T ss_dssp T-EEEE---TTSSHHHH-HHHHHHHHHHCCTTSS------S-EEEEE-T-TTHHHHHHHHHHHSGT--TS-EEEESSSCH
T ss_pred CCCEEEEECCCCCchhh-hhhhhhhhhhcccccc-----ccceeEeecc-chhhhhhhhhccccccc-cccccccccccc
Confidence 46789999999999997 4445544444322111 0138999999 78899999999997432 345666555541
Q ss_pred eeeccccccCCCceEEecCccchh-----hhccccCCceEEEecceeeeecccccccccccccchhhhhhccccccccee
Q 003178 496 FKVDQRRLESDPCQILVATPGRLL-----DHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570 (842)
Q Consensus 496 ~~~~~~~l~~~~~~IIVaTPgrLl-----~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il 570 (842)
........ ....+|+|+|+..+. ..... +.-.++++||+||+|.+-+. .......+..+. ....++
T Consensus 97 ~~~~~~~~-~~~~~vvi~ty~~~~~~~~~~~~~~-----l~~~~~~~vIvDEaH~~k~~--~s~~~~~l~~l~-~~~~~l 167 (299)
T PF00176_consen 97 RRRLSKNQ-LPKYDVVITTYETLRKARKKKDKED-----LKQIKWDRVIVDEAHRLKNK--DSKRYKALRKLR-ARYRWL 167 (299)
T ss_dssp HHHTTSSS-CCCSSEEEEEHHHHH--TSTHTTHH-----HHTSEEEEEEETTGGGGTTT--TSHHHHHHHCCC-ECEEEE
T ss_pred cccccccc-cccceeeeccccccccccccccccc-----cccccceeEEEecccccccc--cccccccccccc-cceEEe
Confidence 11111111 234789999999988 21111 11124889999999998543 233333333344 556788
Q ss_pred ecccCcch
Q 003178 571 FSATMPKE 578 (842)
Q Consensus 571 ~SATl~~~ 578 (842)
+|||+...
T Consensus 168 LSgTP~~n 175 (299)
T PF00176_consen 168 LSGTPIQN 175 (299)
T ss_dssp E-SS-SSS
T ss_pred eccccccc
Confidence 99996543
No 164
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.78 E-value=2e-08 Score=117.41 Aligned_cols=118 Identities=16% Similarity=0.202 Sum_probs=96.5
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH----------------------hhhHHHHhhcCcchhhh
Q 003178 614 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM----------------------KMNVREMYSRKPQLYRD 671 (842)
Q Consensus 614 k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~----------------------~~~v~~lhg~~~~~~R~ 671 (842)
|+.+|..+|...- .-+.+.|||..+....+.+..+|... |..++.|.|......|.
T Consensus 1127 KmiLLleIL~mce--eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1127 KMILLLEILRMCE--EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred ceehHHHHHHHHH--HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 3444555555432 24679999999999999988888742 34578888999999999
Q ss_pred hhhHHHhhcc----eEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeE
Q 003178 672 RISEEFRASK----RLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVL 733 (842)
Q Consensus 672 ~v~~~F~~g~----~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ 733 (842)
.....|.+-. ...||+|.+.+.|||+-..+-||.||..|++..-+|-+=|+-|.|+.--+|+
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceee
Confidence 9999998542 4579999999999999999999999999999999999999999997655554
No 165
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.72 E-value=1.3e-08 Score=110.81 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=57.5
Q ss_pred ceeeeeehhhhhh----hhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHH
Q 003178 398 GYIQMTRVQEATL----SACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAA 473 (842)
Q Consensus 398 g~~~~t~iQ~~aI----~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~ 473 (842)
.|. ++|.|.+.+ ..+..|.++++.||||+|||++|++|++..+....... .+.+++|+++|..+..|...
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-----~~~kvi~~t~T~~~~~q~i~ 79 (289)
T smart00489 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-----QKIKLIYLSRTVSEIEKRLE 79 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-----cccceeEEeccHHHHHHHHH
Confidence 344 589999944 45556899999999999999999999987766533210 22368999999999888877
Q ss_pred HHHHh
Q 003178 474 EAIAL 478 (842)
Q Consensus 474 ~l~~l 478 (842)
.+++.
T Consensus 80 ~l~~~ 84 (289)
T smart00489 80 ELRKL 84 (289)
T ss_pred HHHhc
Confidence 77665
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.72 E-value=1.3e-08 Score=110.81 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=57.5
Q ss_pred ceeeeeehhhhhh----hhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHH
Q 003178 398 GYIQMTRVQEATL----SACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAA 473 (842)
Q Consensus 398 g~~~~t~iQ~~aI----~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~ 473 (842)
.|. ++|.|.+.+ ..+..|.++++.||||+|||++|++|++..+....... .+.+++|+++|..+..|...
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-----~~~kvi~~t~T~~~~~q~i~ 79 (289)
T smart00488 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-----QKIKLIYLSRTVSEIEKRLE 79 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-----cccceeEEeccHHHHHHHHH
Confidence 344 589999944 45556899999999999999999999987766533210 22368999999999888877
Q ss_pred HHHHh
Q 003178 474 EAIAL 478 (842)
Q Consensus 474 ~l~~l 478 (842)
.+++.
T Consensus 80 ~l~~~ 84 (289)
T smart00488 80 ELRKL 84 (289)
T ss_pred HHHhc
Confidence 77665
No 167
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.59 E-value=1.3e-07 Score=112.88 Aligned_cols=317 Identities=21% Similarity=0.278 Sum_probs=182.3
Q ss_pred ehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCC
Q 003178 404 RVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHD 483 (842)
Q Consensus 404 ~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~ 483 (842)
|+-.|.|-.+..+..-|+.+.||-|||++..+|+.-..+..+ .+.++...--||.--..+...++.+.
T Consensus 81 ~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gk-----------gVhvVTvNdYLA~RDae~m~~l~~~L- 148 (822)
T COG0653 81 HFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGK-----------GVHVVTVNDYLARRDAEWMGPLYEFL- 148 (822)
T ss_pred hhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCC-----------CcEEeeehHHhhhhCHHHHHHHHHHc-
Confidence 333445666666777889999999999999999864444332 36777888889988888888888765
Q ss_pred ceeEEEEecceeeeeccccccCCCceEEecCccch-hhhccccC---CceEEEecceeeeeccccccc-cc--------c
Q 003178 484 GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKS---GLSVRLMGLKMLVLDEADHLL-DL--------G 550 (842)
Q Consensus 484 ~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrL-l~~L~~~~---~~~~~L~~l~~lVlDEAh~ll-d~--------g 550 (842)
|+++.+...+.......... .|+|.++|...| .+.|..+. .-...+..+.+.|+||+|-++ |. |
T Consensus 149 GlsvG~~~~~m~~~ek~~aY---~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG 225 (822)
T COG0653 149 GLSVGVILAGMSPEEKRAAY---ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISG 225 (822)
T ss_pred CCceeeccCCCChHHHHHHH---hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeec
Confidence 88888888777543222222 389999998876 23332210 001224468889999999765 21 1
Q ss_pred ---c----ccchhhhhhccccc--------ccceeeccc-------------C-cc-h--------------hhccccce
Q 003178 551 ---F----RKDVENIVDCLPRR--------RQSLLFSAT-------------M-PK-E--------------LVLKREHT 586 (842)
Q Consensus 551 ---f----~~~i~~Il~~l~~~--------~q~il~SAT-------------l-~~-~--------------l~~~~~~~ 586 (842)
. ...+..++..+... .+.|.++-. + .. . ..+..+..
T Consensus 226 ~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~d 305 (822)
T COG0653 226 PAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVD 305 (822)
T ss_pred ccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCe
Confidence 1 11111222111110 011111100 0 00 0 00000000
Q ss_pred ee---------e------------------------------------ec------------------------------
Q 003178 587 YI---------D------------------------------------TV------------------------------ 591 (842)
Q Consensus 587 ~i---------~------------------------------------~v------------------------------ 591 (842)
++ + .+
T Consensus 306 YIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY 385 (822)
T COG0653 306 YIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIY 385 (822)
T ss_pred eEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhcc
Confidence 00 0 00
Q ss_pred cccccccccc-----cc-ccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcC
Q 003178 592 GLGSVETPVK-----IK-QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRK 665 (842)
Q Consensus 592 ~~~~~~~~~~-----l~-~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~ 665 (842)
.......|.+ +. ...++.....|+..+...+.... ..+.|+||-..+....+.+...|.+.+++...+...-
T Consensus 386 ~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~--~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~ 463 (822)
T COG0653 386 GLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERH--EKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKN 463 (822)
T ss_pred CCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHH--hcCCCEEEcCcceecchhHHHHHHhcCCCceeecccc
Confidence 0000000000 00 00112223456666665555544 3567999999999999999999999998876666654
Q ss_pred cchhhhhhhHHHhhcceEEEEeccccccCCCCCCcc-----------eeEEecCCCChHHHHHHhhcCCCCCCCcceeEE
Q 003178 666 PQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVT-----------SVVQVGIPPDREQYIHRLGRTGREGKEGEGVLL 734 (842)
Q Consensus 666 ~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~-----------~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l 734 (842)
. .|..-+-.+.--.-.|-|||++|+||-||.--. +||-...-.|..---|--||+||-|.+|.+..|
T Consensus 464 h--~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~ 541 (822)
T COG0653 464 H--AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFY 541 (822)
T ss_pred H--HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhh
Confidence 4 233222222222346889999999999984222 344443444444445889999999999999888
Q ss_pred eccch
Q 003178 735 LAPWE 739 (842)
Q Consensus 735 l~~~E 739 (842)
++-.+
T Consensus 542 lSleD 546 (822)
T COG0653 542 LSLED 546 (822)
T ss_pred hhhHH
Confidence 77544
No 168
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.52 E-value=1.9e-06 Score=107.57 Aligned_cols=289 Identities=18% Similarity=0.191 Sum_probs=152.8
Q ss_pred cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceee
Q 003178 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496 (842)
Q Consensus 417 ~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~ 496 (842)
+..+|+--||||||++ .+-+...+... . ..+.+++|+-+++|-.|+.+.+..+....... . ...+.
T Consensus 274 ~~G~IWHtqGSGKTlT-m~~~A~~l~~~-~-------~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~--~---~~~s~ 339 (962)
T COG0610 274 KGGYIWHTQGSGKTLT-MFKLARLLLEL-P-------KNPKVLFVVDRKDLDDQTSDEFQSFGKVAFND--P---KAEST 339 (962)
T ss_pred CceEEEeecCCchHHH-HHHHHHHHHhc-c-------CCCeEEEEechHHHHHHHHHHHHHHHHhhhhc--c---cccCH
Confidence 4689999999999997 34344444443 1 12369999999999999999999886432111 0 11121
Q ss_pred eeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhhcccccccceeecccCc
Q 003178 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (842)
Q Consensus 497 ~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~ 576 (842)
..-...+....-.|||+|-..|-..+...... ..-.+==+||+||||+-- .| ..-..+...+ ++...++||.|+-
T Consensus 340 ~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~-~~~~~~ivvI~DEaHRSQ-~G--~~~~~~~~~~-~~a~~~gFTGTPi 414 (962)
T COG0610 340 SELKELLEDGKGKIIVTTIQKFNKAVKEDELE-LLKRKNVVVIIDEAHRSQ-YG--ELAKLLKKAL-KKAIFIGFTGTPI 414 (962)
T ss_pred HHHHHHHhcCCCcEEEEEecccchhhhccccc-ccCCCcEEEEEechhhcc-cc--HHHHHHHHHh-ccceEEEeeCCcc
Confidence 21122233233489999999998777544111 111122368999999832 22 2222223333 3477889999863
Q ss_pred ch--------hhccccceee--eecccccc---------ccc---cccccccc---------------------------
Q 003178 577 KE--------LVLKREHTYI--DTVGLGSV---------ETP---VKIKQSCL--------------------------- 607 (842)
Q Consensus 577 ~~--------l~~~~~~~~i--~~v~~~~~---------~~~---~~l~~~~~--------------------------- 607 (842)
-. +....-+.|. +.+....+ ... ........
T Consensus 415 ~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 494 (962)
T COG0610 415 FKEDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFL 494 (962)
T ss_pred ccccccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHH
Confidence 22 1000000000 00000000 000 00000000
Q ss_pred ccCchhhHHHHHHHHhhhhc-CCCCceEEEEecchhHHHHHHHHHHHHhh---------h-HHHH-------------hh
Q 003178 608 VAPHELHFQILHHLLKEHIL-GTPDYKVIVFCSTGMVTSLLYLLLREMKM---------N-VREM-------------YS 663 (842)
Q Consensus 608 ~~~~~~k~~~L~~lL~~~~~-~~~~~kiIVF~~s~~~~~~l~~~L~~~~~---------~-v~~l-------------hg 663 (842)
.............+...... ...+.+++|.|.++..+..++........ . +..+ |.
T Consensus 495 ~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 574 (962)
T COG0610 495 AMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHA 574 (962)
T ss_pred hcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhH
Confidence 00000000111111111111 23456888888888866666655443210 0 0011 11
Q ss_pred cCcchhhhhhhHHH--hhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCC
Q 003178 664 RKPQLYRDRISEEF--RASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREG 726 (842)
Q Consensus 664 ~~~~~~R~~v~~~F--~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G 726 (842)
.. ...+.....+| +....++||-+|++-+|.|.|.+.++ -+|-|.-....+|.+-||.|.-
T Consensus 575 ~~-~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~~ 637 (962)
T COG0610 575 KL-KDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRVF 637 (962)
T ss_pred HH-HHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceE-EeccccccchHHHHHHHhccCC
Confidence 11 11223333443 35568999999999999999988765 4677777888999999999964
No 169
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.40 E-value=1.9e-07 Score=111.44 Aligned_cols=161 Identities=18% Similarity=0.202 Sum_probs=112.2
Q ss_pred eeeehhhhhhhhhhc-CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhh
Q 003178 401 QMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~-g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~ 479 (842)
.+.|+|.+.+..+.+ ..++++-+|||+|||++|-+.++..+.... +.+++|++|-.+|+..-.+...+..
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p---------~~kvvyIap~kalvker~~Dw~~r~ 997 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP---------GSKVVYIAPDKALVKERSDDWSKRD 997 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC---------CccEEEEcCCchhhcccccchhhhc
Confidence 566788888876555 468899999999999999998876655432 2379999999999988877777665
Q ss_pred hcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhh
Q 003178 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559 (842)
Q Consensus 480 ~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il 559 (842)
.. +|+.+.-++|..... ..... .++|+|+||++...+..+- ...-.+.+++.+|+||.|.+.+ +..+.++-|.
T Consensus 998 ~~-~g~k~ie~tgd~~pd--~~~v~--~~~~~ittpek~dgi~Rsw-~~r~~v~~v~~iv~de~hllg~-~rgPVle~iv 1070 (1230)
T KOG0952|consen 998 EL-PGIKVIELTGDVTPD--VKAVR--EADIVITTPEKWDGISRSW-QTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIV 1070 (1230)
T ss_pred cc-CCceeEeccCccCCC--hhhee--cCceEEcccccccCccccc-cchhhhccccceeecccccccC-CCcceEEEEe
Confidence 44 388888888876643 22222 2699999999987776532 2223467899999999998765 3344444333
Q ss_pred h-------cccccccceeecccCcc
Q 003178 560 D-------CLPRRRQSLLFSATMPK 577 (842)
Q Consensus 560 ~-------~l~~~~q~il~SATl~~ 577 (842)
. ..++..+.+.+|--+.+
T Consensus 1071 sr~n~~s~~t~~~vr~~glsta~~n 1095 (1230)
T KOG0952|consen 1071 SRMNYISSQTEEPVRYLGLSTALAN 1095 (1230)
T ss_pred eccccCccccCcchhhhhHhhhhhc
Confidence 2 23345566666544433
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.31 E-value=3.4e-07 Score=97.73 Aligned_cols=131 Identities=21% Similarity=0.251 Sum_probs=91.1
Q ss_pred eeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhh
Q 003178 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~ 479 (842)
..|+++|..++-.+..|+ |+...||-|||++..+|++-..+... .|-|++....||..=++++..++
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~-----------~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGK-----------GVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS------------EEEEESSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcC-----------CcEEEeccHHHhhccHHHHHHHH
Confidence 358888888887775555 99999999999998888775554332 47888999999999999999998
Q ss_pred hcCCceeEEEEecceeeeeccccccCCCceEEecCccchh-hhccccC---CceEEEecceeeeeccccccc
Q 003178 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLL-DHIENKS---GLSVRLMGLKMLVLDEADHLL 547 (842)
Q Consensus 480 ~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl-~~L~~~~---~~~~~L~~l~~lVlDEAh~ll 547 (842)
... |+.+.+.+.+.......... .++|+++|...|. +.|.... ........+.++||||||.++
T Consensus 143 ~~L-Glsv~~~~~~~~~~~r~~~Y---~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFL-GLSVGIITSDMSSEERREAY---AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHT-T--EEEEETTTEHHHHHHHH---HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHh-hhccccCccccCHHHHHHHH---hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 865 89999998887643222222 2689999998874 3333221 111224678999999999876
No 171
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.20 E-value=2.2e-06 Score=104.61 Aligned_cols=67 Identities=22% Similarity=0.290 Sum_probs=51.1
Q ss_pred ceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCC--CCc-----c--ee-EEeccchhhhhccCC
Q 003178 681 KRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREG--KEG-----E--GV-LLLAPWEEYFLDDLK 747 (842)
Q Consensus 681 ~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G--~~G-----~--~i-~ll~~~E~~~l~~L~ 747 (842)
..+.|++-.++..|-|.|+|=.+.-..-..+...-.|.+||.-|.- ..| . -+ ++.+..+..|.+.|+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ 577 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLV 577 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHH
Confidence 5789999999999999999998888888888888899999998842 122 2 22 234456667776654
No 172
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.03 E-value=8.1e-05 Score=88.08 Aligned_cols=67 Identities=21% Similarity=0.311 Sum_probs=53.7
Q ss_pred ceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCC--CCccee-----------EEeccchhhhhccCC
Q 003178 681 KRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREG--KEGEGV-----------LLLAPWEEYFLDDLK 747 (842)
Q Consensus 681 ~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G--~~G~~i-----------~ll~~~E~~~l~~L~ 747 (842)
..+.|++--++-.|.|-|+|=.+.-.....|..+=.|.+||.-|.. ..|.-+ +++...+..|++.|+
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999953 344333 345556777877664
No 173
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.92 E-value=1.8e-05 Score=82.32 Aligned_cols=74 Identities=16% Similarity=0.308 Sum_probs=49.9
Q ss_pred eeeehhhhhhhhhhcCcc-eEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH
Q 003178 401 QMTRVQEATLSACLEGKD-AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~d-vii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~ 477 (842)
++++-|.+|+..+++... .+|.||.|||||.+ +.-++..++.... ......+.++|+++||...+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~--~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFK--SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH---------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchh--hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367889999999999998 89999999999974 4445555421100 00011233699999999999999998887
No 174
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.84 E-value=0.00029 Score=82.03 Aligned_cols=105 Identities=10% Similarity=0.177 Sum_probs=88.9
Q ss_pred CceEEEEecchhHHHHHHHHHHHH------------------hhhHHHHhhcCcchhhhhhhHHHhhc---ceEEEEecc
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREM------------------KMNVREMYSRKPQLYRDRISEEFRAS---KRLILVTSD 689 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~------------------~~~v~~lhg~~~~~~R~~v~~~F~~g---~~~VLVaTd 689 (842)
+.++|||..+......+.+.|.+. +...+.+.|..+..+|.+.+.+|.+- ...+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 458999999988888888888754 23456778889999999999999853 246889999
Q ss_pred ccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEe
Q 003178 690 VSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLL 735 (842)
Q Consensus 690 v~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll 735 (842)
....|||+=..+-+|.||.-+++..-.|.+-|.-|.|+...|+++=
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEe
Confidence 9999999988889999999999999999999999999888887653
No 175
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.82 E-value=2e-05 Score=78.92 Aligned_cols=106 Identities=25% Similarity=0.358 Sum_probs=72.4
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHhh--hHHHHhhcCcchhhhhhhHHHhhcceEEEEecc--ccccCCCCCC--ccee
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMKM--NVREMYSRKPQLYRDRISEEFRASKRLILVTSD--VSARGMDYPD--VTSV 703 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~~--~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd--v~arGlDip~--V~~V 703 (842)
.++++|||++|....+.++..+..... .+..+.. ....+..+++.|+++...||+|+. .++.|||+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 357999999999999999998875431 1222222 356788999999999999999998 9999999997 8889
Q ss_pred EEecCCC----Ch--------------------------HHHHHHhhcCCCCCCCcceeEEecc
Q 003178 704 VQVGIPP----DR--------------------------EQYIHRLGRTGREGKEGEGVLLLAP 737 (842)
Q Consensus 704 I~yd~P~----s~--------------------------~~yiQRiGRaGR~G~~G~~i~ll~~ 737 (842)
|..++|. ++ ....|.+||+-|....--+++++.+
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 9999883 11 1125889999998765444555544
No 176
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.68 E-value=4.1e-05 Score=78.75 Aligned_cols=60 Identities=27% Similarity=0.304 Sum_probs=40.6
Q ss_pred eeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhH
Q 003178 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (842)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReL 467 (842)
+...|+.|..++.+++...-+++.||.|||||+..+..+++.+...... +++|+-|+.+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~---------kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYD---------KIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-S---------EEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCc---------EEEEEecCCCC
Confidence 3457889999999999888899999999999998888787777653322 57888887654
No 177
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.64 E-value=5.7e-05 Score=77.69 Aligned_cols=63 Identities=27% Similarity=0.327 Sum_probs=43.7
Q ss_pred eeeehhhhhhhhhhcCc--ceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHH
Q 003178 401 QMTRVQEATLSACLEGK--DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~--dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~ 474 (842)
++++-|.+++..++.+. -++|+|+.|+|||.+ +-.+...+... +.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~----------g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA----------GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT----------T--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC----------CCeEEEECCcHHHHHHHHHh
Confidence 36788999999997654 467889999999984 33344433332 23699999999888876554
No 178
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.52 E-value=0.00017 Score=90.27 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=102.3
Q ss_pred hhHHHHHHHH-hhhhcCCCCc--eEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhc--ceEEEEe
Q 003178 613 LHFQILHHLL-KEHILGTPDY--KVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRAS--KRLILVT 687 (842)
Q Consensus 613 ~k~~~L~~lL-~~~~~~~~~~--kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g--~~~VLVa 687 (842)
.+...+..++ .... ..+. ++|||++.......+...|...++.+..++|.++...|...+..|.++ ..-+|++
T Consensus 692 ~k~~~l~~ll~~~~~--~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls 769 (866)
T COG0553 692 GKLQALDELLLDKLL--EEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLS 769 (866)
T ss_pred hHHHHHHHHHHHHHH--hhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEE
Confidence 4566666666 3333 2344 899999999999999999999998899999999999999999999986 4567778
Q ss_pred ccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeE
Q 003178 688 SDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVL 733 (842)
Q Consensus 688 Tdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ 733 (842)
|.+++.|+|+-..++||+||..+++....|...|+.|.|+...+.+
T Consensus 770 ~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v 815 (866)
T COG0553 770 LKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKV 815 (866)
T ss_pred ecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEE
Confidence 8999999999999999999999999999999999999997665444
No 179
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.48 E-value=0.00013 Score=75.95 Aligned_cols=108 Identities=22% Similarity=0.291 Sum_probs=73.8
Q ss_pred eeeehhhhhhhhhhc---CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH
Q 003178 401 QMTRVQEATLSACLE---GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~---g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~ 477 (842)
-+++.|.++...+.+ |.+.+.+.-+|.|||.+ ++|++..++.++.. .+.+++| ++|..|....+..
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~---------LvrviVp-k~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR---------LVRVIVP-KALLEQMRQMLRS 91 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc---------EEEEEcC-HHHHHHHHHHHHH
Confidence 488999998888876 57999999999999998 99999888765432 4667777 6899999999888
Q ss_pred hhhcCCceeEEEEecceeeeec------cc----cccCCCceEEecCccchhh
Q 003178 478 LLKNHDGIGVLTLVGGTRFKVD------QR----RLESDPCQILVATPGRLLD 520 (842)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~------~~----~l~~~~~~IIVaTPgrLl~ 520 (842)
.++...+-.+..+-=....... .. .... .-.|+++||+.++.
T Consensus 92 ~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~-~~gill~~PEhilS 143 (229)
T PF12340_consen 92 RLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMR-SGGILLATPEHILS 143 (229)
T ss_pred HHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHH-cCCEEEeChHHHHH
Confidence 7765433333332211111111 11 1111 23699999998764
No 180
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.33 E-value=0.0005 Score=79.36 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=62.4
Q ss_pred hhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHH
Q 003178 393 ALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (842)
Q Consensus 393 ~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~ 472 (842)
.+...++.++..-|..|+.++|+..-.+|++|.|+|||.+ ...|+.++.+... ..+|+.+|+...+.|++
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvt-sa~IVyhl~~~~~---------~~VLvcApSNiAVDqLa 471 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQHA---------GPVLVCAPSNIAVDQLA 471 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceeh-hHHHHHHHHHhcC---------CceEEEcccchhHHHHH
Confidence 4555678889999999999999999999999999999998 4455556655422 25899999999999999
Q ss_pred HHHHHh
Q 003178 473 AEAIAL 478 (842)
Q Consensus 473 ~~l~~l 478 (842)
+.+.+.
T Consensus 472 eKIh~t 477 (935)
T KOG1802|consen 472 EKIHKT 477 (935)
T ss_pred HHHHhc
Confidence 887765
No 181
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.24 E-value=0.00034 Score=80.54 Aligned_cols=65 Identities=25% Similarity=0.419 Sum_probs=51.7
Q ss_pred eeeehhhhhhhhhhcCcce-EEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 401 QMTRVQEATLSACLEGKDA-VVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dv-ii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
.+.+-|.+|+...++.+++ +|.||.|+|||.+ +.-++..+...+. ++||.+||.+.+..+.+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~T-lvEiI~qlvk~~k----------~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRT-LVEIISQLVKQKK----------RVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceee-HHHHHHHHHHcCC----------eEEEEcCchHHHHHHHHHhc
Confidence 4677899999999998764 6899999999998 5556666665442 69999999999988887543
No 182
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.10 E-value=0.001 Score=71.71 Aligned_cols=159 Identities=19% Similarity=0.183 Sum_probs=97.1
Q ss_pred eeehhhhhhhhhhc----------CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHH
Q 003178 402 MTRVQEATLSACLE----------GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (842)
Q Consensus 402 ~t~iQ~~aI~~il~----------g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi 471 (842)
++..|.+++-.+.+ +.-.++-..||.||--...--|+++.+.... ++|.++.+-.|-...
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~----------r~vwvS~s~dL~~Da 107 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK----------RAVWVSVSNDLKYDA 107 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC----------ceEEEECChhhhhHH
Confidence 56778887765542 3456788899999998655555655554332 589999999999999
Q ss_pred HHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEe--------c-ceeeeecc
Q 003178 472 AAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLM--------G-LKMLVLDE 542 (842)
Q Consensus 472 ~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~--------~-l~~lVlDE 542 (842)
.+.+..+... .+.+..+..- +.. ....+ .-.||++|+-.|...-.........|. + =.+||+||
T Consensus 108 ~RDl~DIG~~--~i~v~~l~~~-~~~-~~~~~---~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDE 180 (303)
T PF13872_consen 108 ERDLRDIGAD--NIPVHPLNKF-KYG-DIIRL---KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDE 180 (303)
T ss_pred HHHHHHhCCC--cccceechhh-ccC-cCCCC---CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEecc
Confidence 9999988654 2333332221 100 11112 246999999888765432111111111 1 23799999
Q ss_pred cccccccccc--------cchhhhhhcccccccceeecccCcch
Q 003178 543 ADHLLDLGFR--------KDVENIVDCLPRRRQSLLFSATMPKE 578 (842)
Q Consensus 543 Ah~lld~gf~--------~~i~~Il~~l~~~~q~il~SATl~~~ 578 (842)
||..-+..-. ..+..+-+.+| +.+++.+|||-..+
T Consensus 181 cH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgase 223 (303)
T PF13872_consen 181 CHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASE 223 (303)
T ss_pred chhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCC
Confidence 9998765321 22333444565 44599999997665
No 183
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.10 E-value=0.00044 Score=77.67 Aligned_cols=96 Identities=16% Similarity=0.237 Sum_probs=58.5
Q ss_pred ceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeee
Q 003178 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497 (842)
Q Consensus 418 dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~ 497 (842)
-++|.|..|||||++ ++-++..+.... .+..++++++...|...+...+......
T Consensus 3 v~~I~G~aGTGKTvl-a~~l~~~l~~~~--------~~~~~~~l~~n~~l~~~l~~~l~~~~~~---------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVL-ALNLAKELQNSE--------EGKKVLYLCGNHPLRNKLREQLAKKYNP---------------- 57 (352)
T ss_pred EEEEEecCCcCHHHH-HHHHHHHhhccc--------cCCceEEEEecchHHHHHHHHHhhhccc----------------
Confidence 368999999999996 444444441111 1225899999999988877766554200
Q ss_pred eccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccccccc
Q 003178 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549 (842)
Q Consensus 498 ~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~ 549 (842)
......+..+..++..+... ......+++|||||||+|...
T Consensus 58 --------~~~~~~~~~~~~~i~~~~~~---~~~~~~~DviivDEAqrl~~~ 98 (352)
T PF09848_consen 58 --------KLKKSDFRKPTSFINNYSES---DKEKNKYDVIIVDEAQRLRTK 98 (352)
T ss_pred --------chhhhhhhhhHHHHhhcccc---cccCCcCCEEEEehhHhhhhc
Confidence 00122344444444333200 122457899999999999873
No 184
>PRK10536 hypothetical protein; Provisional
Probab=97.05 E-value=0.00077 Score=71.48 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=45.4
Q ss_pred cccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhH
Q 003178 395 TAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (842)
Q Consensus 395 ~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReL 467 (842)
.-.++...+..|...+.++..+..+++.|++|+|||+..+..+++.+..... -+++|.-|+.+.
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~---------~kIiI~RP~v~~ 116 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDV---------DRIIVTRPVLQA 116 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCe---------eEEEEeCCCCCc
Confidence 3346667788999999999888888999999999999755555545543221 146666676543
No 185
>PF13245 AAA_19: Part of AAA domain
Probab=97.02 E-value=0.0011 Score=57.32 Aligned_cols=60 Identities=30% Similarity=0.409 Sum_probs=40.2
Q ss_pred hhhhhhc-CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHH
Q 003178 409 TLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (842)
Q Consensus 409 aI~~il~-g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l 475 (842)
+|...+. +.-++|.|+.|||||.. ++..+..+....... +-++|+++||+.++..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~-~~~~i~~l~~~~~~~------~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTT-LAARIAELLAARADP------GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHH-HHHHHHHHHHHhcCC------CCeEEEECCCHHHHHHHHHHH
Confidence 3443344 44456699999999975 455555555321110 126999999999999988877
No 186
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.00 E-value=0.0011 Score=79.11 Aligned_cols=143 Identities=19% Similarity=0.269 Sum_probs=83.8
Q ss_pred eehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcC
Q 003178 403 TRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482 (842)
Q Consensus 403 t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~ 482 (842)
.+.|+.|+-..+.++-++|.|+.|+|||.+ +.-++..+.+... ..+..+++++||.-.|..+.+.+...+...
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~~------~~~~~i~l~APTgkAA~rL~e~~~~~~~~~ 226 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLAD------GERCRIRLAAPTGKAAARLTESLGKALRQL 226 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhcC------CCCcEEEEECCcHHHHHHHHHHHHhhhhcc
Confidence 478999999999999999999999999985 3334444433211 112468899999999988887665443221
Q ss_pred CceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCce---EEEecceeeeecccccccccccccchhhhh
Q 003178 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLS---VRLMGLKMLVLDEADHLLDLGFRKDVENIV 559 (842)
Q Consensus 483 ~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~---~~L~~l~~lVlDEAh~lld~gf~~~i~~Il 559 (842)
+ + .. ..... ...-..|--+|+........+. .+.-.+++||||||-++- ...+..++
T Consensus 227 ~-~-----~~------~~~~~----~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll 286 (615)
T PRK10875 227 P-L-----TD------EQKKR----IPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLI 286 (615)
T ss_pred c-c-----ch------hhhhc----CCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHH
Confidence 0 0 00 00000 0111233333332211110000 112246899999998653 24456677
Q ss_pred hcccccccceeec
Q 003178 560 DCLPRRRQSLLFS 572 (842)
Q Consensus 560 ~~l~~~~q~il~S 572 (842)
..+++..++|++-
T Consensus 287 ~al~~~~rlIlvG 299 (615)
T PRK10875 287 DALPPHARVIFLG 299 (615)
T ss_pred HhcccCCEEEEec
Confidence 7788777777653
No 187
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.87 E-value=0.002 Score=76.89 Aligned_cols=142 Identities=19% Similarity=0.237 Sum_probs=82.5
Q ss_pred ehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCC
Q 003178 404 RVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHD 483 (842)
Q Consensus 404 ~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~ 483 (842)
+.|+.|+..++.++-++|.|+.|+|||.+ +..++..+....... .+.++++++||--.|..+.+.+.......
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~~-----~~~~I~l~APTGkAA~rL~e~~~~~~~~l- 220 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPKQ-----GKLRIALAAPTGKAAARLAESLRKAVKNL- 220 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhcccc-----CCCcEEEECCcHHHHHHHHHHHHhhhccc-
Confidence 68999999999999999999999999996 344444443322110 12368999999998888777665433211
Q ss_pred ceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCce---EEEecceeeeecccccccccccccchhhhhh
Q 003178 484 GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLS---VRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (842)
Q Consensus 484 ~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~---~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~ 560 (842)
... . . ... ...+-..|--+|+........+. .+...+++||||||-++.. ..+..++.
T Consensus 221 --~~~---~--~---~~~-----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~----~l~~~ll~ 281 (586)
T TIGR01447 221 --AAA---E--A---LIA-----ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL----PLMAKLLK 281 (586)
T ss_pred --ccc---h--h---hhh-----ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH----HHHHHHHH
Confidence 000 0 0 000 01112334333332221110010 1123578999999987542 34566777
Q ss_pred cccccccceee
Q 003178 561 CLPRRRQSLLF 571 (842)
Q Consensus 561 ~l~~~~q~il~ 571 (842)
.++...++|++
T Consensus 282 al~~~~rlIlv 292 (586)
T TIGR01447 282 ALPPNTKLILL 292 (586)
T ss_pred hcCCCCEEEEE
Confidence 77777776665
No 188
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.77 E-value=0.0017 Score=79.41 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=47.0
Q ss_pred eeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHH
Q 003178 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAA 473 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~ 473 (842)
..+++-|++|+..+..++-++|.|+.|+|||.+ +-.++..+..... ...+++++||-..|..+.+
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~~~--------~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEELGG--------LLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHcCC--------CceEEEEeCchHHHHHHHH
Confidence 358999999999999989999999999999984 3333333322210 1257889999888875543
No 189
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.77 E-value=0.0029 Score=77.71 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHhhhhcC-------CCCceEEEEecchhHHHHHHHHHHH
Q 003178 612 ELHFQILHHLLKEHILG-------TPDYKVIVFCSTGMVTSLLYLLLRE 653 (842)
Q Consensus 612 ~~k~~~L~~lL~~~~~~-------~~~~kiIVF~~s~~~~~~l~~~L~~ 653 (842)
.-|...|..+|.+.... .+++++||||+..+.|..+.++|..
T Consensus 269 ~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 269 NPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 44556666666554432 3557899999999999999999965
No 190
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.65 E-value=0.0023 Score=69.91 Aligned_cols=71 Identities=25% Similarity=0.343 Sum_probs=50.8
Q ss_pred eeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhc
Q 003178 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (842)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~ 481 (842)
+|+-|.++|.. ....++|.|..|||||.+.+--++ .++.... ..+-++|+|++|+.+|..+..++...+..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~-~ll~~~~------~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIA-YLLYEGG------VPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHH-HHHHTSS------STGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHH-Hhhcccc------CChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 47789999988 678899999999999997433333 3333321 11225999999999999999999887654
No 191
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.26 E-value=0.0016 Score=61.55 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=12.1
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
++.++|.|++|+|||.+
T Consensus 4 ~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTL 20 (131)
T ss_dssp ---EEEEE-TTSSHHHH
T ss_pred CcccEEEcCCCCCHHHH
Confidence 45788999999999994
No 192
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.25 E-value=0.007 Score=73.16 Aligned_cols=127 Identities=20% Similarity=0.260 Sum_probs=78.7
Q ss_pred eeeeeehhhhhhhhhhcCcc-eEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH
Q 003178 399 YIQMTRVQEATLSACLEGKD-AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (842)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~d-vii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~ 477 (842)
+..++..|++|+-.++.-+| .+|.|-.|+|||.+ +..++..+...+. ++|+.+=|-..+..+.-.+..
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTt-I~~LIkiL~~~gk----------kVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTT-ISLLIKILVALGK----------KVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhh-HHHHHHHHHHcCC----------eEEEEehhhHHHHHHHHHHhc
Confidence 45688899999998888665 68999999999996 3334444443322 588888887776666555444
Q ss_pred hhhcCCceeEEEEecceeeeecccccc----------------CCCceEEecCccchhhhccccCCceEEEecceeeeec
Q 003178 478 LLKNHDGIGVLTLVGGTRFKVDQRRLE----------------SDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLD 541 (842)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~~~l~----------------~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlD 541 (842)
+ ++...-+-.+..+..+.+.+. -+.+.|+.||--.+.+.|... ..+++.|||
T Consensus 736 ~-----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~~-------R~FD~cIiD 803 (1100)
T KOG1805|consen 736 F-----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFVN-------RQFDYCIID 803 (1100)
T ss_pred c-----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhhc-------cccCEEEEc
Confidence 3 222221122222221111111 134688888866665554332 458999999
Q ss_pred ccccccc
Q 003178 542 EADHLLD 548 (842)
Q Consensus 542 EAh~lld 548 (842)
||-.++.
T Consensus 804 EASQI~l 810 (1100)
T KOG1805|consen 804 EASQILL 810 (1100)
T ss_pred ccccccc
Confidence 9998753
No 193
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.18 E-value=0.0029 Score=72.71 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=72.6
Q ss_pred EeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeecc
Q 003178 421 VKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500 (842)
Q Consensus 421 i~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~ 500 (842)
..+.||||||++.+- ++-+++..+.. .-|+.|..-.........+..-+....-+.-.+.+++..+....
T Consensus 2 f~matgsgkt~~ma~-lil~~y~kgyr---------~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikk 71 (812)
T COG3421 2 FEMATGSGKTLVMAG-LILECYKKGYR---------NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKK 71 (812)
T ss_pred cccccCCChhhHHHH-HHHHHHHhchh---------hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeee
Confidence 457899999997444 34445554432 24555554333333222221111000011223334444433221
Q ss_pred ccc---cCCCceEEecCccchhhhccccCCceE---EEecce-eeeecccccccccc---------cccchhhhhh-cc-
Q 003178 501 RRL---ESDPCQILVATPGRLLDHIENKSGLSV---RLMGLK-MLVLDEADHLLDLG---------FRKDVENIVD-CL- 562 (842)
Q Consensus 501 ~~l---~~~~~~IIVaTPgrLl~~L~~~~~~~~---~L~~l~-~lVlDEAh~lld~g---------f~~~i~~Il~-~l- 562 (842)
... .+.+..|+++|...|...+.+...-.. ++.+.+ +++-||||++.... -...++..+. .+
T Consensus 72 vn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~ 151 (812)
T COG3421 72 VNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE 151 (812)
T ss_pred ecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh
Confidence 111 345689999999999766644322222 234444 45679999986421 1111111111 11
Q ss_pred -cccccceeecccCcch
Q 003178 563 -PRRRQSLLFSATMPKE 578 (842)
Q Consensus 563 -~~~~q~il~SATl~~~ 578 (842)
.++--++.||||.|++
T Consensus 152 ~nkd~~~lef~at~~k~ 168 (812)
T COG3421 152 QNKDNLLLEFSATIPKE 168 (812)
T ss_pred cCCCceeehhhhcCCcc
Confidence 2234467789999966
No 194
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.15 E-value=0.0076 Score=72.28 Aligned_cols=79 Identities=14% Similarity=0.271 Sum_probs=46.0
Q ss_pred CceEEEEecchhHHHHHHHHHHHHhhh------HHHHhhcCcchhhhhhhHHHhh--------cceEEEEeccccccCCC
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREMKMN------VREMYSRKPQLYRDRISEEFRA--------SKRLILVTSDVSARGMD 696 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~~~~------v~~lhg~~~~~~R~~v~~~F~~--------g~~~VLVaTdv~arGlD 696 (842)
+..+|||+++....+.+.......+.- .-.+..-.+..+=..++..|.+ |..-+.||---.++|+|
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 346999999998877775554432110 0011111122223344455543 23345667778899999
Q ss_pred CCC--cceeEEecCC
Q 003178 697 YPD--VTSVVQVGIP 709 (842)
Q Consensus 697 ip~--V~~VI~yd~P 709 (842)
+.+ -+.||..++|
T Consensus 641 FsD~~~RaVI~tGlP 655 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLP 655 (945)
T ss_pred ccccCCceeEEecCC
Confidence 976 5679988887
No 195
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=96.04 E-value=0.0058 Score=51.18 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhccchhhhccchhhHHHH-HHHHHHhhcCCCCCchh
Q 003178 779 KEAAYHAWLGYYNSIREIGRDKTTLVEL-ANKFAQSIGLQRPPPLF 823 (842)
Q Consensus 779 ~~~a~~s~l~yy~~~~~~~~~~~~~~~l-~~~la~s~gL~~~P~v~ 823 (842)
...||.+|+.+|..+ .-.+..+++.+| .+++|++|||..+|+|+
T Consensus 20 A~~Af~SyvraY~~~-~~~k~iF~~~~L~l~~~A~sfGL~~~P~v~ 64 (65)
T PF13959_consen 20 AQKAFVSYVRAYASH-KELKDIFNVKKLDLGHLAKSFGLLEAPKVR 64 (65)
T ss_pred HHHHHHHHHHHHHHH-hhhhhhCCcccCCHHHHHHHcCCCCCCCCC
Confidence 345777777777765 223344455555 57889999999999985
No 196
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.03 E-value=0.012 Score=57.23 Aligned_cols=41 Identities=22% Similarity=0.499 Sum_probs=32.4
Q ss_pred hhhhhhHHHhhcc-eEEEEeccccccCCCCCC--cceeEEecCC
Q 003178 669 YRDRISEEFRASK-RLILVTSDVSARGMDYPD--VTSVVQVGIP 709 (842)
Q Consensus 669 ~R~~v~~~F~~g~-~~VLVaTdv~arGlDip~--V~~VI~yd~P 709 (842)
+...+++.|++.. ..||++|.-++.|||+|+ ++.||..++|
T Consensus 35 ~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 35 ETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred HHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 4466677777654 379999988999999998 5789888877
No 197
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.00 E-value=0.012 Score=57.30 Aligned_cols=65 Identities=28% Similarity=0.470 Sum_probs=45.2
Q ss_pred hhhhHHHhhcce---EEEEeccc--cccCCCCCC--cceeEEecCCCC-------------------------------h
Q 003178 671 DRISEEFRASKR---LILVTSDV--SARGMDYPD--VTSVVQVGIPPD-------------------------------R 712 (842)
Q Consensus 671 ~~v~~~F~~g~~---~VLVaTdv--~arGlDip~--V~~VI~yd~P~s-------------------------------~ 712 (842)
..+++.|++... .||+++.- ++.|||+|+ ++.||..++|.. .
T Consensus 34 ~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 113 (142)
T smart00491 34 EELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFDAM 113 (142)
T ss_pred HHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 456667765433 68988877 999999998 678998888731 1
Q ss_pred HHHHHHhhcCCCCCCCcceeEEe
Q 003178 713 EQYIHRLGRTGREGKEGEGVLLL 735 (842)
Q Consensus 713 ~~yiQRiGRaGR~G~~G~~i~ll 735 (842)
....|.+||+-|....--+++++
T Consensus 114 ~~~~Qa~GR~iR~~~D~g~i~l~ 136 (142)
T smart00491 114 RALAQAIGRAIRHKNDYGVVVLL 136 (142)
T ss_pred HHHHHHhCccccCccceEEEEEE
Confidence 12258899999976543344444
No 198
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.93 E-value=0.0077 Score=68.04 Aligned_cols=59 Identities=32% Similarity=0.387 Sum_probs=43.1
Q ss_pred eeehhhhhhhhh------hcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHH
Q 003178 402 MTRVQEATLSAC------LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (842)
Q Consensus 402 ~t~iQ~~aI~~i------l~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi 471 (842)
+++-|+.++..+ ..+..++|.|+-|+|||+ ++-.+...+... +..+++++||-..|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~~~---------~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLRSR---------GKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhccc---------cceEEEecchHHHHHhc
Confidence 567788888777 567899999999999999 444444443321 12589999998877665
No 199
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.45 E-value=0.017 Score=72.34 Aligned_cols=61 Identities=25% Similarity=0.226 Sum_probs=44.2
Q ss_pred eeeehhhhhhhhhhcCcc-eEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHH
Q 003178 401 QMTRVQEATLSACLEGKD-AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~d-vii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~ 472 (842)
.+++-|.+++..++.+++ ++|.|..|+|||++ +- .+..+.... +..++.++||--.|..+.
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~-~~~~~~e~~---------G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LG-VAREAWEAA---------GYEVRGAALSGIAAENLE 407 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HH-HHHHHHHHc---------CCeEEEecCcHHHHHHHh
Confidence 489999999999998664 67999999999984 33 333333321 236899999977665543
No 200
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.42 E-value=0.1 Score=61.50 Aligned_cols=123 Identities=19% Similarity=0.255 Sum_probs=79.2
Q ss_pred hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhH------HHHhhcCcchhhhhhhHHHh----hcc
Q 003178 612 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNV------REMYSRKPQLYRDRISEEFR----ASK 681 (842)
Q Consensus 612 ~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v------~~lhg~~~~~~R~~v~~~F~----~g~ 681 (842)
...+.-|..++.......| +.++||+||.+-...++....+.|+-- ..++..... -..++..|. .|.
T Consensus 611 ~~~l~~l~~~~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~--~~dvl~~Ya~a~~~g~ 687 (821)
T KOG1133|consen 611 PEMIKDLGSSISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT--VEDVLEGYAEAAERGR 687 (821)
T ss_pred hHHHHHHHHHHHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc--HHHHHHHHHHHhhcCC
Confidence 3444555555555443334 789999999998888888887655411 111111111 344566665 455
Q ss_pred eEEEEec--cccccCCCCCC--cceeEEecCCCC------------------------hH--------HHHHHhhcCCCC
Q 003178 682 RLILVTS--DVSARGMDYPD--VTSVVQVGIPPD------------------------RE--------QYIHRLGRTGRE 725 (842)
Q Consensus 682 ~~VLVaT--dv~arGlDip~--V~~VI~yd~P~s------------------------~~--------~yiQRiGRaGR~ 725 (842)
-.||+|. .-++.||||.+ .+.||.+++|.. .+ ..-|-+|||-|.
T Consensus 688 GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH 767 (821)
T KOG1133|consen 688 GAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRH 767 (821)
T ss_pred CeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 5777765 56789999987 788999998731 11 124888999987
Q ss_pred CCCcceeEEecc
Q 003178 726 GKEGEGVLLLAP 737 (842)
Q Consensus 726 G~~G~~i~ll~~ 737 (842)
-+.-.+|+++..
T Consensus 768 ~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 768 RKDYASIYLLDK 779 (821)
T ss_pred hccceeEEEehh
Confidence 777777777643
No 201
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.35 E-value=0.021 Score=70.29 Aligned_cols=61 Identities=23% Similarity=0.221 Sum_probs=44.1
Q ss_pred eeeehhhhhhhhhhcC-cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHH
Q 003178 401 QMTRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g-~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~ 472 (842)
.+++-|.+|+..++.+ +-++|.|+.|+|||.. +-.+..++... +..+++++||--.|..+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~~---------g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEAA---------GYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHhC---------CCeEEEEeCcHHHHHHHH
Confidence 4789999999998874 5678999999999984 33333333321 236889999977766554
No 202
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.33 E-value=0.0069 Score=64.33 Aligned_cols=86 Identities=24% Similarity=0.295 Sum_probs=58.6
Q ss_pred ceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecc-eeeeeccccccCCCceEEecCccchhhhccccCCceEEEe
Q 003178 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG-TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 455 ~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg-~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
.|.+|||+..--=|..+.+.+..+-.. +..|.-++.- ..+..+...+....++|.||||+||..++.++ .+.+.
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~---~L~l~ 200 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENG---ALSLS 200 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcC---CCCcc
Confidence 457889988766666777666665311 1222223322 24455555566667999999999999999776 46788
Q ss_pred cceeeeeccccc
Q 003178 534 GLKMLVLDEADH 545 (842)
Q Consensus 534 ~l~~lVlDEAh~ 545 (842)
++.+||||--|.
T Consensus 201 ~l~~ivlD~s~~ 212 (252)
T PF14617_consen 201 NLKRIVLDWSYL 212 (252)
T ss_pred cCeEEEEcCCcc
Confidence 999999997653
No 203
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.33 E-value=0.019 Score=69.39 Aligned_cols=66 Identities=20% Similarity=0.318 Sum_probs=52.5
Q ss_pred eeeehhhhhhhhhhcC-cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH
Q 003178 401 QMTRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g-~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~ 477 (842)
.+++.|..|+..++.. ..++|.||+|+|||.+ +..++.++...+ .++|+++||...+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-~~~ii~~~~~~g----------~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT-LVELIRQLVKRG----------LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH-HHHHHHHHHHcC----------CCEEEEcCcHHHHHHHHHHHHh
Confidence 5788999999998876 5678999999999986 444555554432 2599999999999999888776
No 204
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.25 E-value=0.028 Score=61.77 Aligned_cols=64 Identities=23% Similarity=0.302 Sum_probs=49.4
Q ss_pred cceeeeeehhhhhhhhhhcCc--ceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHH
Q 003178 397 AGYIQMTRVQEATLSACLEGK--DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (842)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~--dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA 468 (842)
.|+..-...|.-|+..++.-. =|.+.++.|||||+.++.+.++..+..+... ++||.=|+..+-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~--------KiiVtRp~vpvG 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYR--------KIIVTRPTVPVG 289 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhc--------eEEEecCCcCcc
Confidence 477777788999999988754 3568899999999998888888887765432 477777776654
No 205
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.24 E-value=0.01 Score=74.39 Aligned_cols=160 Identities=17% Similarity=0.166 Sum_probs=93.8
Q ss_pred eeeeehhhhhhhhhhc-----CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHH
Q 003178 400 IQMTRVQEATLSACLE-----GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~-----g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~ 474 (842)
..+.++|.+.+..+.. +.+.+++..+|.|||+.. +..+.+++...... ...+||+||+ +++.+|.++
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~-i~~l~~~~~~~~~~------~~~~liv~p~-s~~~nw~~e 408 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQT-IALLLSLLESIKVY------LGPALIVVPA-SLLSNWKRE 408 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHH-HHHHHhhhhcccCC------CCCeEEEecH-HHHHHHHHH
Confidence 4567789998877552 667888999999999873 33333333222110 1248999996 555778888
Q ss_pred HHHhhhcCCcee-EEEEecceee----eeccccccCC----CceEEecCccchhhhccccCCceEEEecceeeeeccccc
Q 003178 475 AIALLKNHDGIG-VLTLVGGTRF----KVDQRRLESD----PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545 (842)
Q Consensus 475 l~~l~~~~~~i~-v~~l~Gg~~~----~~~~~~l~~~----~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~ 545 (842)
+.++.. .+. +....|.... ......+... ..+++++|.+.|...+.... ...-..+.++|+||||+
T Consensus 409 ~~k~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~--~l~~~~~~~~v~DEa~~ 483 (866)
T COG0553 409 FEKFAP---DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHG--GLKKIEWDRVVLDEAHR 483 (866)
T ss_pred HhhhCc---cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHH--HHhhceeeeeehhhHHH
Confidence 866654 344 5555555431 1122222221 16899999998877421111 12223678999999999
Q ss_pred ccccccccchhhhhhcccccccceeecccC
Q 003178 546 LLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (842)
Q Consensus 546 lld~gf~~~i~~Il~~l~~~~q~il~SATl 575 (842)
+.+.. ......+. .+....+ +++|.|+
T Consensus 484 ikn~~-s~~~~~l~-~~~~~~~-~~LtgTP 510 (866)
T COG0553 484 IKNDQ-SSEGKALQ-FLKALNR-LDLTGTP 510 (866)
T ss_pred Hhhhh-hHHHHHHH-HHhhcce-eeCCCCh
Confidence 76542 12222222 3332222 7778886
No 206
>PHA02533 17 large terminase protein; Provisional
Probab=94.77 E-value=0.085 Score=62.46 Aligned_cols=74 Identities=15% Similarity=0.092 Sum_probs=54.3
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.|.|.|...+..+..++-.++..+=..|||.+....++..+.... +..+++++|++.-|..+.+.++.+..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~---------~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK---------DKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC---------CCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 378899999888766676678888889999975544443333211 23689999999999999988887766
Q ss_pred cCC
Q 003178 481 NHD 483 (842)
Q Consensus 481 ~~~ 483 (842)
..+
T Consensus 130 ~~P 132 (534)
T PHA02533 130 LLP 132 (534)
T ss_pred hCH
Confidence 544
No 207
>PRK04296 thymidine kinase; Provisional
Probab=94.69 E-value=0.0094 Score=60.99 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=22.4
Q ss_pred cceeeeecccccccccccccchhhhhhcccccccceeeccc
Q 003178 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SAT 574 (842)
++++|||||||.+.. .++..++..+.+.-..+++++-
T Consensus 78 ~~dvviIDEaq~l~~----~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 78 KIDCVLIDEAQFLDK----EQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred CCCEEEEEccccCCH----HHHHHHHHHHHHcCCeEEEEec
Confidence 578999999986422 3355566664444445555543
No 208
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.63 E-value=0.05 Score=68.83 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=49.0
Q ss_pred CCchhHhhhcccceeeeeehhhhhhhhhhc-CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccc
Q 003178 386 ISPLTIKALTAAGYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (842)
Q Consensus 386 l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~-g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PT 464 (842)
+++..+......+ ..+++-|.+++..+.. ++-++|+|..|+|||++ +-++.+ +.... +..++.++||
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~-~~e~~---------G~~V~g~ApT 434 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAARE-AWEAA---------GYRVVGGALA 434 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHH-HHHHc---------CCeEEEEcCc
Confidence 3344444433333 3589999999998765 45678999999999994 333333 33221 2368899999
Q ss_pred hhHHHHHH
Q 003178 465 RELASQIA 472 (842)
Q Consensus 465 ReLA~Qi~ 472 (842)
--.|..+.
T Consensus 435 gkAA~~L~ 442 (1102)
T PRK13826 435 GKAAEGLE 442 (1102)
T ss_pred HHHHHHHH
Confidence 77766553
No 209
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.62 E-value=0.095 Score=59.74 Aligned_cols=75 Identities=16% Similarity=0.090 Sum_probs=43.7
Q ss_pred cceeeeeehhhhhhhhh----hcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHH
Q 003178 397 AGYIQMTRVQEATLSAC----LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (842)
Q Consensus 397 ~g~~~~t~iQ~~aI~~i----l~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~ 472 (842)
+.|...+|-|-+-+-.+ -.+.+.++.+|+|+|||.+.+--++...+..... ..+.++-+-|..=+....
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~-------~~KliYCSRTvpEieK~l 84 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDE-------HRKLIYCSRTVPEIEKAL 84 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcc-------cceEEEecCcchHHHHHH
Confidence 35667788887765443 3466889999999999998444444333332211 224566655554444444
Q ss_pred HHHHHh
Q 003178 473 AEAIAL 478 (842)
Q Consensus 473 ~~l~~l 478 (842)
.+++.+
T Consensus 85 ~El~~l 90 (755)
T KOG1131|consen 85 EELKRL 90 (755)
T ss_pred HHHHHH
Confidence 444444
No 210
>PF13871 Helicase_C_4: Helicase_C-like
Probab=94.60 E-value=0.068 Score=57.61 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=56.6
Q ss_pred hhhHHHhhcceEEEEeccccccCCCCCC--------cceeEEecCCCChHHHHHHhhcCCCCCCC-cceeEEecc---ch
Q 003178 672 RISEEFRASKRLILVTSDVSARGMDYPD--------VTSVVQVGIPPDREQYIHRLGRTGREGKE-GEGVLLLAP---WE 739 (842)
Q Consensus 672 ~v~~~F~~g~~~VLVaTdv~arGlDip~--------V~~VI~yd~P~s~~~yiQRiGRaGR~G~~-G~~i~ll~~---~E 739 (842)
...+.|.+|+..|+|.|++++.||-+.. -++-|...+|++....+|..||+.|.|+. .-.|.++.. .|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 3457899999999999999999998864 34567788999999999999999999963 444554443 45
Q ss_pred hhhh
Q 003178 740 EYFL 743 (842)
Q Consensus 740 ~~~l 743 (842)
..|.
T Consensus 132 ~Rfa 135 (278)
T PF13871_consen 132 RRFA 135 (278)
T ss_pred HHHH
Confidence 5554
No 211
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.49 E-value=0.066 Score=50.48 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=15.1
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
++.+++.|++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999973
No 212
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.25 E-value=0.11 Score=60.92 Aligned_cols=129 Identities=15% Similarity=0.175 Sum_probs=74.8
Q ss_pred ehhhhhhhhhhc-----C----cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHH
Q 003178 404 RVQEATLSACLE-----G----KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (842)
Q Consensus 404 ~iQ~~aI~~il~-----g----~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~ 474 (842)
|+|.-++-.++. | +.+++.-+=|.|||.....-++..+.-.+ ..+..+++++++++-|..+++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g-------~~~~~i~~~A~~~~QA~~~f~~ 73 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG-------EPGAEIYCAANTRDQAKIVFDE 73 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC-------ccCceEEEEeCCHHHHHHHHHH
Confidence 567766666652 1 45788889999999954433343443221 1233689999999999999999
Q ss_pred HHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccccccc
Q 003178 475 AIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549 (842)
Q Consensus 475 l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~ 549 (842)
+..++...+.+....-. .. .....-.|..-..+.++..+...... ..=.+..++|+||+|.+.+.
T Consensus 74 ~~~~i~~~~~l~~~~~~---~~------~~~~~~~i~~~~~~s~~~~~s~~~~~-~dG~~~~~~i~DE~h~~~~~ 138 (477)
T PF03354_consen 74 AKKMIEASPELRKRKKP---KI------IKSNKKEIEFPKTGSFFKALSSDADS-LDGLNPSLAIFDELHAHKDD 138 (477)
T ss_pred HHHHHHhChhhccchhh---hh------hhhhceEEEEcCCCcEEEEEecCCCC-ccCCCCceEEEeCCCCCCCH
Confidence 99988765433311100 00 00011234433334444444333211 11125689999999998664
No 213
>PRK08181 transposase; Validated
Probab=94.09 E-value=0.063 Score=57.99 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=26.8
Q ss_pred ecceeeeecccccccccc-cccchhhhhhcccccccceeecccCcch
Q 003178 533 MGLKMLVLDEADHLLDLG-FRKDVENIVDCLPRRRQSLLFSATMPKE 578 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~g-f~~~i~~Il~~l~~~~q~il~SATl~~~ 578 (842)
.++++|||||.+.+.... ....+..|++.......+|+.|...+..
T Consensus 166 ~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~ 212 (269)
T PRK08181 166 DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGE 212 (269)
T ss_pred hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 357889999998764322 2234555665544344555555554444
No 214
>PRK06526 transposase; Provisional
Probab=94.08 E-value=0.049 Score=58.40 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=18.4
Q ss_pred hhhhcCcceEEeeccCCCceee
Q 003178 411 SACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 411 ~~il~g~dvii~A~TGSGKTla 432 (842)
..+..+.+++++||+|+|||..
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThL 114 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHL 114 (254)
T ss_pred chhhcCceEEEEeCCCCchHHH
Confidence 4445678999999999999985
No 215
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.90 E-value=0.11 Score=58.66 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.3
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
|..+++.||||+|||+.
T Consensus 137 g~ii~lvGptGvGKTTt 153 (374)
T PRK14722 137 GGVFALMGPTGVGKTTT 153 (374)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 66788999999999996
No 216
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.88 E-value=0.06 Score=65.79 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=52.6
Q ss_pred eeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
+++-|.+++... ...++|.|..|||||.+ ++.-+.+++.... .++-++|+|+.|+..|..+.+++..+++
T Consensus 3 Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~v-L~~Ria~Li~~~~------v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 3 LNPGQQQAVEFV--TGPCLVLAGAGSGKTRV-ITNKIAHLIRGCG------YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHH-HHHHHHHHHHhcC------CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 678899998763 46788999999999998 4444555554311 1223699999999999999999988764
No 217
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.86 E-value=0.097 Score=59.43 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=28.1
Q ss_pred ecceeeeeccccccccc-ccccchhhhhhccccc-ccceeecccCcch
Q 003178 533 MGLKMLVLDEADHLLDL-GFRKDVENIVDCLPRR-RQSLLFSATMPKE 578 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~-gf~~~i~~Il~~l~~~-~q~il~SATl~~~ 578 (842)
.++++||||++.+.... .....+..++...... ..++.+|||....
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 46789999999987521 1223444455544333 3457789987644
No 218
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=93.44 E-value=0.0064 Score=68.57 Aligned_cols=104 Identities=13% Similarity=0.002 Sum_probs=89.6
Q ss_pred hhhcccCCCCCccCCCCcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC---cccCCCCCCch
Q 003178 21 RVFARPMGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLEQEKQLYQARVRSQIRTKLFDKADPDS---ETNQHKPMSPD 97 (842)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 97 (842)
-++++.++|+++||+..+..|+|..+...+.|..-.+++....+-+.+++.+|.++.+..-+...- -..+..+..++
T Consensus 121 Dvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~ 200 (543)
T KOG0342|consen 121 DVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEAD 200 (543)
T ss_pred cceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHH
Confidence 466788999999999999999999999999999999999999999999999999999876643311 23356667788
Q ss_pred HHHHHHHHHHHhhchhcccCCCCCCCc
Q 003178 98 EHVKALADRFMKEGAEDLWNEDDGPVK 124 (842)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (842)
...|-....+.+||....|-+|.++..
T Consensus 201 kl~k~~niliATPGRLlDHlqNt~~f~ 227 (543)
T KOG0342|consen 201 KLVKGCNILIATPGRLLDHLQNTSGFL 227 (543)
T ss_pred HhhccccEEEeCCchHHhHhhcCCcch
Confidence 888888999999999999999998844
No 219
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.37 E-value=0.13 Score=63.02 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=52.6
Q ss_pred eeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
+++-|.+++.. ....++|.|..|||||.+ ++--+.+++.... ..+-++|+|+.|+..|.++.+++.+.++
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~-L~~ri~~ll~~~~------~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRV-ITNKIAYLIQNCG------YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 67889998865 356899999999999997 4444555554211 1223689999999999999999988764
No 220
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.16 E-value=0.099 Score=63.75 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=53.2
Q ss_pred eeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhh
Q 003178 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~ 479 (842)
..+++-|++|+-.. ..+++|.|..|||||.+ ++.-+..++..... .+-.+|+|+.|+.+|..+.+++...+
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~v-l~~r~ayLl~~~~~------~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSV-LVARAGWLLARGQA------QPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHH-HHHHHHHHHHhCCC------CHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 46899999998643 35689999999999997 44444445443211 12259999999999999999888766
Q ss_pred h
Q 003178 480 K 480 (842)
Q Consensus 480 ~ 480 (842)
+
T Consensus 266 g 266 (684)
T PRK11054 266 G 266 (684)
T ss_pred C
Confidence 4
No 221
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.01 E-value=0.15 Score=57.58 Aligned_cols=63 Identities=11% Similarity=0.098 Sum_probs=32.4
Q ss_pred ecCccchhhhccccCCceEEEecceeeeecccccccc-cccccchhhhhhcccccccceeecccCcch
Q 003178 512 VATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (842)
Q Consensus 512 VaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld-~gf~~~i~~Il~~l~~~~q~il~SATl~~~ 578 (842)
+.+|..+.+.+.... ...++++|+||-+-+... ......+..++....+..-++.+|||....
T Consensus 302 ~~d~~~L~~aL~~lk----~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 302 VRDEAAMTRALTYFK----EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred cCCHHHHHHHHHHHH----hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 345666655553221 012478899998877542 112333344444333333456688876543
No 222
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=92.94 E-value=0.1 Score=64.40 Aligned_cols=72 Identities=22% Similarity=0.238 Sum_probs=54.7
Q ss_pred eeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhh
Q 003178 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~ 479 (842)
..+++-|.+++... ...++|.|..|||||.+ +..=+.+++.... .++-.+|+|+-|+..|..+.+++.+++
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~-L~~Ria~Li~~~~------v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRV-LTHRIAWLLSVEN------ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHH-HHHHHHHHHHcCC------CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 35889999998653 46799999999999997 4444555554321 122369999999999999999998886
Q ss_pred h
Q 003178 480 K 480 (842)
Q Consensus 480 ~ 480 (842)
+
T Consensus 74 ~ 74 (715)
T TIGR01075 74 G 74 (715)
T ss_pred c
Confidence 5
No 223
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.87 E-value=0.062 Score=50.07 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.9
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+..+++.||+|+|||..
T Consensus 2 ~~~~~l~G~~G~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCCcHHHH
Confidence 45789999999999994
No 224
>PRK08727 hypothetical protein; Validated
Probab=92.61 E-value=0.17 Score=53.49 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.7
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
..+++.|++|+|||..
T Consensus 42 ~~l~l~G~~G~GKThL 57 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL 57 (233)
T ss_pred CeEEEECCCCCCHHHH
Confidence 3489999999999973
No 225
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.53 E-value=0.14 Score=63.23 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=54.2
Q ss_pred eeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhh
Q 003178 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~ 479 (842)
..+++-|.+++... ...++|.|..|||||.+ ++.-+.++..... .++-.+|+|+-|+..|..+.+++.+++
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~v-l~~Ria~Li~~~~------v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRV-LVHRIAWLMQVEN------ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHH-HHHHHHHHHHcCC------CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 35889999998753 46789999999999997 4444445554211 122369999999999999999998876
Q ss_pred h
Q 003178 480 K 480 (842)
Q Consensus 480 ~ 480 (842)
+
T Consensus 79 ~ 79 (721)
T PRK11773 79 G 79 (721)
T ss_pred c
Confidence 5
No 226
>PRK07952 DNA replication protein DnaC; Validated
Probab=92.36 E-value=0.19 Score=53.45 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=25.8
Q ss_pred ecceeeeeccccccccccccc-chhhhhhccc-ccccceeecccCcc
Q 003178 533 MGLKMLVLDEADHLLDLGFRK-DVENIVDCLP-RRRQSLLFSATMPK 577 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~-~i~~Il~~l~-~~~q~il~SATl~~ 577 (842)
.++++|||||++......+.. .+..|+..-- ....+++.|---+.
T Consensus 161 ~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~ 207 (244)
T PRK07952 161 SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNME 207 (244)
T ss_pred ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHH
Confidence 357899999999876443333 3344555422 24556665544333
No 227
>PRK14974 cell division protein FtsY; Provisional
Probab=92.35 E-value=0.12 Score=57.68 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=32.8
Q ss_pred cceeeeeccccccc-ccccccchhhhhhcccccccceeecccCcch
Q 003178 534 GLKMLVLDEADHLL-DLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (842)
Q Consensus 534 ~l~~lVlDEAh~ll-d~gf~~~i~~Il~~l~~~~q~il~SATl~~~ 578 (842)
++++||||.|.++. +..+...+..+...+.+...++.++||....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh
Confidence 56799999999986 4445666777776666666677888876543
No 228
>PRK06921 hypothetical protein; Provisional
Probab=92.28 E-value=0.13 Score=55.62 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=19.2
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHH
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~ 442 (842)
.+..+++.|++|+|||.. +..+...+.
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHh
Confidence 356799999999999984 333444444
No 229
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.24 E-value=0.67 Score=62.99 Aligned_cols=63 Identities=10% Similarity=0.139 Sum_probs=46.5
Q ss_pred eeeehhhhhhhhhhcC--cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHH
Q 003178 401 QMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g--~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~ 474 (842)
.+++-|.+++..++.. +-++|.++.|+|||.+ +-.+..+.+.. +..+++++||-..|.++.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~~---------G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASEQ---------GYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHH
Confidence 5889999999998875 5678999999999984 33333343321 23689999998877766654
No 230
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.06 E-value=0.17 Score=52.14 Aligned_cols=45 Identities=24% Similarity=0.440 Sum_probs=29.4
Q ss_pred cceeeeeccccccc-ccccccchhhhhhcccccccceeecccCcch
Q 003178 534 GLKMLVLDEADHLL-DLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (842)
Q Consensus 534 ~l~~lVlDEAh~ll-d~gf~~~i~~Il~~l~~~~q~il~SATl~~~ 578 (842)
++++|+||=+-+.. +......+..++..+.+..-.+.+|||...+
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~ 128 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE 128 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH
Confidence 46788888887654 2234455666666665566678889998665
No 231
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.01 E-value=0.21 Score=51.95 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=15.6
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.+..+++.|++|+|||..
T Consensus 37 ~~~~lll~G~~G~GKT~l 54 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHL 54 (226)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 356899999999999984
No 232
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.87 E-value=0.34 Score=58.73 Aligned_cols=100 Identities=13% Similarity=0.080 Sum_probs=76.6
Q ss_pred ceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcc-eE-EEEeccccccCCCCCCcceeEEecCC
Q 003178 632 YKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASK-RL-ILVTSDVSARGMDYPDVTSVVQVGIP 709 (842)
Q Consensus 632 ~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~-~~-VLVaTdv~arGlDip~V~~VI~yd~P 709 (842)
.++|||+.-...+..+...|...++....+.|.|+...|.+.+..|..+. .. .|++.-+..-|+|+-...+||..|+=
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 37888888777777777777777778888888888888888888888443 22 34567777788888888888888888
Q ss_pred CChHHHHHHhhcCCCCCCCcce
Q 003178 710 PDREQYIHRLGRTGREGKEGEG 731 (842)
Q Consensus 710 ~s~~~yiQRiGRaGR~G~~G~~ 731 (842)
+++..--|.+-|+.|.|+.-.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v 641 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPV 641 (674)
T ss_pred cChHHHHHHHHHHHHhccccee
Confidence 8888888888888888754433
No 233
>PRK05642 DNA replication initiation factor; Validated
Probab=91.73 E-value=0.22 Score=52.63 Aligned_cols=44 Identities=16% Similarity=0.309 Sum_probs=28.6
Q ss_pred cceeeeeccccccccc-ccccchhhhhhcccccccceeecccCcc
Q 003178 534 GLKMLVLDEADHLLDL-GFRKDVENIVDCLPRRRQSLLFSATMPK 577 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~-gf~~~i~~Il~~l~~~~q~il~SATl~~ 577 (842)
++++||||++|.+... .+...+..+++.+......+++++|.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4578999999987532 3445577777766554445666666544
No 234
>PRK06893 DNA replication initiation factor; Validated
Probab=91.45 E-value=0.22 Score=52.48 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=28.6
Q ss_pred cceeeeecccccccc-cccccchhhhhhccccc-ccceeecccCcch
Q 003178 534 GLKMLVLDEADHLLD-LGFRKDVENIVDCLPRR-RQSLLFSATMPKE 578 (842)
Q Consensus 534 ~l~~lVlDEAh~lld-~gf~~~i~~Il~~l~~~-~q~il~SATl~~~ 578 (842)
+.++|||||+|.+.. ..+...+..+++.+... .+++++|++.++.
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 567899999998763 22344455666555443 4566777776544
No 235
>PRK12377 putative replication protein; Provisional
Probab=91.26 E-value=0.29 Score=52.28 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=19.1
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHh
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
...+++.|++|+|||.. +..+.+.+..
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~ 127 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLA 127 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 35789999999999984 3444444443
No 236
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.18 E-value=0.4 Score=55.29 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=25.2
Q ss_pred cceeeeeccccccc-ccccccchhhhhhc-ccccccceeecccCcch
Q 003178 534 GLKMLVLDEADHLL-DLGFRKDVENIVDC-LPRRRQSLLFSATMPKE 578 (842)
Q Consensus 534 ~l~~lVlDEAh~ll-d~gf~~~i~~Il~~-l~~~~q~il~SATl~~~ 578 (842)
++++||||-+-+.. +......+..++.. ..+....+++|||....
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 57889999886532 22223344455542 12234467788886543
No 237
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=90.90 E-value=0.27 Score=47.54 Aligned_cols=44 Identities=16% Similarity=0.394 Sum_probs=25.1
Q ss_pred cceeeeeccccccccccc----------ccchhhhhhcccccccceeecccCcc
Q 003178 534 GLKMLVLDEADHLLDLGF----------RKDVENIVDCLPRRRQSLLFSATMPK 577 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~gf----------~~~i~~Il~~l~~~~q~il~SATl~~ 577 (842)
...++||||++.+.+... ...+..+........-++++....+.
T Consensus 85 ~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 85 GDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 578899999998764321 23344444444433444555554443
No 238
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=90.83 E-value=0.6 Score=53.33 Aligned_cols=136 Identities=14% Similarity=0.206 Sum_probs=73.8
Q ss_pred ceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchh-HHHHHHHHHHHhhhcCCceeEEEEecceee
Q 003178 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE-LASQIAAEAIALLKNHDGIGVLTLVGGTRF 496 (842)
Q Consensus 418 dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTRe-LA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~ 496 (842)
-.++.|..|||||.+.++-++..++... ++..+|++-||.. |..-++..+...+... ++....-......
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~--------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~ 73 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK--------KQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSM 73 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC--------CCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCcc
Confidence 3578899999999988877777776641 1236899989886 6666667776655433 2221111111100
Q ss_pred eeccccccCCCceEEecCc-cchhhhccccCCceEEEecceeeeecccccccccccccchhhhhhccc--ccccceeecc
Q 003178 497 KVDQRRLESDPCQILVATP-GRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP--RRRQSLLFSA 573 (842)
Q Consensus 497 ~~~~~~l~~~~~~IIVaTP-grLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~--~~~q~il~SA 573 (842)
...+...+..|++..- +.-.+ + .....+.++.+|||..+... .+..++..+. ...+.+++|.
T Consensus 74 ---~i~~~~~g~~i~f~g~~d~~~~-i-------k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~ 138 (396)
T TIGR01547 74 ---EIKILNTGKKFIFKGLNDKPNK-L-------KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSS 138 (396)
T ss_pred ---EEEecCCCeEEEeecccCChhH-h-------hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEc
Confidence 1111121334554432 11111 1 11234689999999998543 3344444333 1222477788
Q ss_pred cCcc
Q 003178 574 TMPK 577 (842)
Q Consensus 574 Tl~~ 577 (842)
|++.
T Consensus 139 NP~~ 142 (396)
T TIGR01547 139 NPES 142 (396)
T ss_pred CcCC
Confidence 8654
No 239
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.73 E-value=0.18 Score=55.50 Aligned_cols=61 Identities=21% Similarity=0.235 Sum_probs=44.3
Q ss_pred cceeeeeehhhhhhhhhhcCc-ceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHH
Q 003178 397 AGYIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELAS 469 (842)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~-dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~ 469 (842)
..|..+++-|...+..+...+ +++|++.||||||+ +++.+...-.... ++|++=-|.||..
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT-----lLNal~~~i~~~e-------RvItiEDtaELql 214 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT-----LLNALSGFIDSDE-------RVITIEDTAELQL 214 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH-----HHHHHHhcCCCcc-------cEEEEeehhhhcc
Confidence 467789999999998888766 99999999999999 3333333222111 6888888877743
No 240
>PRK08116 hypothetical protein; Validated
Probab=90.56 E-value=0.27 Score=53.19 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=19.0
Q ss_pred cceEEeeccCCCceeeehhHHHHHHHh
Q 003178 417 KDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 417 ~dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
..+++.|++|+|||.. +..+.+.+..
T Consensus 115 ~gl~l~G~~GtGKThL-a~aia~~l~~ 140 (268)
T PRK08116 115 VGLLLWGSVGTGKTYL-AACIANELIE 140 (268)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 3589999999999985 3345555554
No 241
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=90.54 E-value=0.27 Score=60.77 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=53.5
Q ss_pred eeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhh
Q 003178 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~ 479 (842)
..+++-|.+++.+. ...++|.|..|||||.+ ++--+.+++.... ..+-++|+++-|+..|..+.+++.+++
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~-l~~ria~Li~~~~------i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRV-LTHRIAHLIAEKN------VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHH-HHHHHHHHHHcCC------CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 35889999999753 56799999999999997 4444444543221 112259999999999999999998776
Q ss_pred h
Q 003178 480 K 480 (842)
Q Consensus 480 ~ 480 (842)
+
T Consensus 74 ~ 74 (726)
T TIGR01073 74 G 74 (726)
T ss_pred c
Confidence 4
No 242
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.51 E-value=0.11 Score=52.21 Aligned_cols=48 Identities=23% Similarity=0.187 Sum_probs=29.2
Q ss_pred eEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 419 AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 419 vii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
++|.|++|+|||... +-++....+.+ -.++|++. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~-~~~~~~~~~~g----------~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFA-LQFLYAGLARG----------EPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHH-HHHHHHHHHCC----------CcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999952 22222222221 13677654 56667777766655
No 243
>PRK05580 primosome assembly protein PriA; Validated
Probab=90.41 E-value=0.41 Score=58.61 Aligned_cols=76 Identities=8% Similarity=0.042 Sum_probs=64.5
Q ss_pred CceEEEEecchhHHHHHHHHHHHH-hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEec
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREM-KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVG 707 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~-~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd 707 (842)
+.++||.+|++..+.++++.|++. +..+..+||+++..+|...+.....|..+|+|+|..+.. +.+.++.+||.-.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 568999999999999999999764 678899999999999999999999999999999974432 5677888888544
No 244
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=90.40 E-value=1.5 Score=52.47 Aligned_cols=139 Identities=19% Similarity=0.228 Sum_probs=82.3
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcC-CceeEEEEec
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH-DGIGVLTLVG 492 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~-~~i~v~~l~G 492 (842)
...+-.++..|=-.|||.. +.+++..++... .+.++++++|.+..+..+++++...+... +...+..+.|
T Consensus 252 fkqk~tVflVPRR~GKTwi-vv~iI~~ll~s~--------~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG 322 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWF-LVPLIALALATF--------RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG 322 (738)
T ss_pred hhccceEEEecccCCchhh-HHHHHHHHHHhC--------CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC
Confidence 4456678888889999996 446666555432 24579999999999999999998877532 1111222233
Q ss_pred ceeeeeccccccCCC-ceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhhcc-ccccccee
Q 003178 493 GTRFKVDQRRLESDP-CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL-PRRRQSLL 570 (842)
Q Consensus 493 g~~~~~~~~~l~~~~-~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l-~~~~q~il 570 (842)
..+ ...+..++ ..|.++|- .+.. ...=.+++++|||||+.+.+.-+ ..++-.+ ..+.++|+
T Consensus 323 -e~I---~i~f~nG~kstI~FaSa-------rntN--siRGqtfDLLIVDEAqFIk~~al----~~ilp~l~~~n~k~I~ 385 (738)
T PHA03368 323 -ETI---SFSFPDGSRSTIVFASS-------HNTN--GIRGQDFNLLFVDEANFIRPDAV----QTIMGFLNQTNCKIIF 385 (738)
T ss_pred -cEE---EEEecCCCccEEEEEec-------cCCC--CccCCcccEEEEechhhCCHHHH----HHHHHHHhccCccEEE
Confidence 222 11122121 24555431 1110 01112688999999998876433 3333222 23788999
Q ss_pred ecccCcch
Q 003178 571 FSATMPKE 578 (842)
Q Consensus 571 ~SATl~~~ 578 (842)
+|-|-+..
T Consensus 386 ISS~Ns~~ 393 (738)
T PHA03368 386 VSSTNTGK 393 (738)
T ss_pred EecCCCCc
Confidence 99886553
No 245
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=90.33 E-value=0.27 Score=53.53 Aligned_cols=58 Identities=12% Similarity=0.195 Sum_probs=35.6
Q ss_pred cceEEeeccCCCceeeehhHHHHHHHhhcccCccc-ccCceEEEEeccchhHHHHHHHHHHHhh
Q 003178 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQ-LVPPIYVLILCPTRELASQIAAEAIALL 479 (842)
Q Consensus 417 ~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~-~~~~~~~LIL~PTReLA~Qi~~~l~~l~ 479 (842)
.+++++|+||.|||. ++++..+........ ...-+.++|-+|...=....+..+-..+
T Consensus 62 p~lLivG~snnGKT~-----Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTM-----IIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred CceEEecCCCCcHHH-----HHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 479999999999999 455555433221111 1122456777887776666666555444
No 246
>PRK08084 DNA replication initiation factor; Provisional
Probab=90.19 E-value=0.5 Score=49.97 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=24.9
Q ss_pred ceeeeecccccccc-cccccchhhhhhccccc-ccceeecccCcc
Q 003178 535 LKMLVLDEADHLLD-LGFRKDVENIVDCLPRR-RQSLLFSATMPK 577 (842)
Q Consensus 535 l~~lVlDEAh~lld-~gf~~~i~~Il~~l~~~-~q~il~SATl~~ 577 (842)
+++|||||+|.+.. ..+...+..+++.+... ...+++|++.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 46899999999863 22344455555554332 223555555444
No 247
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=90.16 E-value=0.04 Score=55.53 Aligned_cols=125 Identities=24% Similarity=0.246 Sum_probs=51.5
Q ss_pred EEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec
Q 003178 420 VVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499 (842)
Q Consensus 420 ii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~ 499 (842)
|+.|+=|-|||.+.-+.+...+... ...++|.+|+.+-+..+++.+..-+... ++.... ......
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~----------~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~~~----~~~~~~ 65 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG----------KIRILVTAPSPENVQTLFEFAEKGLKAL-GYKEEK----KKRIGQ 65 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc----------CceEEEecCCHHHHHHHHHHHHhhcccc-cccccc----cccccc
Confidence 5789999999986433322111111 1358999999998888777655544321 111100 000000
Q ss_pred cccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhhcccccccceeecccCcc
Q 003178 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (842)
Q Consensus 500 ~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~ 577 (842)
...+......|-+..|..+...- ...++||||||=.+.- +.+..++.. ...++||.|+..
T Consensus 66 ~~~~~~~~~~i~f~~Pd~l~~~~----------~~~DlliVDEAAaIp~----p~L~~ll~~----~~~vv~stTi~G 125 (177)
T PF05127_consen 66 IIKLRFNKQRIEFVAPDELLAEK----------PQADLLIVDEAAAIPL----PLLKQLLRR----FPRVVFSTTIHG 125 (177)
T ss_dssp -------CCC--B--HHHHCCT--------------SCEEECTGGGS-H----HHHHHHHCC----SSEEEEEEEBSS
T ss_pred ccccccccceEEEECCHHHHhCc----------CCCCEEEEechhcCCH----HHHHHHHhh----CCEEEEEeeccc
Confidence 01111123567777777665432 1348899999976532 233444433 235777888654
No 248
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=90.04 E-value=0.32 Score=63.59 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=52.1
Q ss_pred eeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
+|+-|.++|.. .+++++|.|..|||||.+..--++..+... . ..-++|+|+=|+..|..+.+++.+.+.
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~-------~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG-V-------DIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-C-------CHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 57889999974 588999999999999998444444444322 1 111589999999999999988877664
No 249
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=89.93 E-value=0.48 Score=58.12 Aligned_cols=76 Identities=13% Similarity=0.237 Sum_probs=65.7
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-cccCCCCCCcceeE
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-SARGMDYPDVTSVV 704 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-~arGlDip~V~~VI 704 (842)
.+.+++|.+||+.-+.+++..+++. ++.+..+||+++..+|..++....+|+..|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 3568999999999999888887764 578899999999999999999999999999999964 45567889999988
Q ss_pred E
Q 003178 705 Q 705 (842)
Q Consensus 705 ~ 705 (842)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 4
No 250
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=89.80 E-value=0.38 Score=63.15 Aligned_cols=65 Identities=25% Similarity=0.253 Sum_probs=44.5
Q ss_pred eeeehhhhhhhhhhcC--cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHH
Q 003178 401 QMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g--~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~ 472 (842)
.+++-|.+|+..++.+ +-++|+|..|+|||.. +-.++..+..... ..+..++.++||--.|..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~-l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQ-FRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHH-HHHHHHHHHHHhh------ccCceEEEEechHHHHHHHH
Confidence 6899999999999965 6788999999999985 2222222211100 11235888999987776654
No 251
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.80 E-value=0.43 Score=53.96 Aligned_cols=138 Identities=22% Similarity=0.260 Sum_probs=64.5
Q ss_pred ceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeee
Q 003178 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497 (842)
Q Consensus 418 dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~ 497 (842)
-.++.||.|+||+.. ...+...++-...............+.+++.-.-+.++. .+.++++.+..-.......
T Consensus 43 A~Lf~Gp~G~GK~~l-A~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~------~~~HPDl~~i~~~~~~~~~ 115 (365)
T PRK07471 43 AWLIGGPQGIGKATL-AYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA------AGAHGGLLTLERSWNEKGK 115 (365)
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH------ccCCCCeEEEecccccccc
Confidence 478999999999985 333444454322111000000011333444323333221 2345665543321100000
Q ss_pred eccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhhcccccccceeeccc
Q 003178 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (842)
Q Consensus 498 ~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SAT 574 (842)
.. ...|.|-..-.+.+.+... ......++|||||+|.|.... ...+.+++...+....+|++|..
T Consensus 116 ----~~---~~~I~VdqiR~l~~~~~~~----~~~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 116 ----RL---RTVITVDEVRELISFFGLT----AAEGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred ----cc---cccccHHHHHHHHHHhCcC----cccCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECC
Confidence 00 1245454433344444322 223567899999999986543 33455555555445545554433
No 252
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=89.74 E-value=0.16 Score=54.91 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=29.6
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeecccCc
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~ 576 (842)
..+++|||||||.|.... ...+...+...++...+++.+..+.
T Consensus 128 ~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 128 PPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 457899999999987543 3455666666666666777665543
No 253
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=89.69 E-value=0.16 Score=65.73 Aligned_cols=93 Identities=20% Similarity=0.294 Sum_probs=75.1
Q ss_pred EEEEecchhHHHHHHHHHHHHhh-hHHHHhhcCcch-----------hhhhhhHHHhhcceEEEEeccccccCCCCCCcc
Q 003178 634 VIVFCSTGMVTSLLYLLLREMKM-NVREMYSRKPQL-----------YRDRISEEFRASKRLILVTSDVSARGMDYPDVT 701 (842)
Q Consensus 634 iIVF~~s~~~~~~l~~~L~~~~~-~v~~lhg~~~~~-----------~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~ 701 (842)
.|+|++....+..+.+.++.... .+..+.|.+.+. .+..++..|.....++|++|.++..|+|++.++
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~ 374 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCN 374 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhh
Confidence 48889888888888888876532 222233333221 267888999999999999999999999999999
Q ss_pred eeEEecCCCChHHHHHHhhcCCCCC
Q 003178 702 SVVQVGIPPDREQYIHRLGRTGREG 726 (842)
Q Consensus 702 ~VI~yd~P~s~~~yiQRiGRaGR~G 726 (842)
.|+.++.|.....|+|..||+-+..
T Consensus 375 ~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 375 LVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999997754
No 254
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.62 E-value=0.49 Score=55.89 Aligned_cols=75 Identities=8% Similarity=0.083 Sum_probs=63.4
Q ss_pred CceEEEEecchhHHHHHHHHHHHH-hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEe
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREM-KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQV 706 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~-~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~y 706 (842)
++++||.+|+..-+..++..|++. +..+..+||+++..+|..+.....+|+..|+|+|..+.. +-++++.+||.-
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVD 100 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVD 100 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEE
Confidence 568999999999999999999764 667889999999999999999999999999999975432 457788888843
No 255
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.61 E-value=0.39 Score=55.94 Aligned_cols=43 Identities=14% Similarity=0.317 Sum_probs=24.3
Q ss_pred cceeeeecccccccccc-cccchhhhhhcccc-cccceeecccCcc
Q 003178 534 GLKMLVLDEADHLLDLG-FRKDVENIVDCLPR-RRQSLLFSATMPK 577 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~g-f~~~i~~Il~~l~~-~~q~il~SATl~~ 577 (842)
++++|||||+|.+.... ....+..+++.+.. ..+++ ++++.++
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~ii-its~~~p 255 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIV-LTSDRPP 255 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEE-EECCCCH
Confidence 56789999999875432 22344455544433 34544 4554443
No 256
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=89.50 E-value=0.16 Score=60.68 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=53.3
Q ss_pred eeeehhhhhhhhhhcC--cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHH-HHHHH
Q 003178 401 QMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA-AEAIA 477 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g--~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~-~~l~~ 477 (842)
..+|+|.+.+..+-.. +.|+++.++-+|||.+ ++-++-...... +.-+|++.||.++|.... .++..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~-~~n~~g~~i~~~---------P~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTEL-LLNWIGYSIDQD---------PGPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHH-HHhhceEEEEeC---------CCCEEEEEEcHHHHHHHHHHHHHH
Confidence 4678999988887654 5788999999999995 222222222111 224899999999999987 56777
Q ss_pred hhhcCCcee
Q 003178 478 LLKNHDGIG 486 (842)
Q Consensus 478 l~~~~~~i~ 486 (842)
++...+.+.
T Consensus 86 mi~~sp~l~ 94 (557)
T PF05876_consen 86 MIRASPVLR 94 (557)
T ss_pred HHHhCHHHH
Confidence 777665544
No 257
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=89.26 E-value=0.65 Score=54.03 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=27.0
Q ss_pred ecceeeeeccccccccc-ccccchhhhhhcccc-cccceeecccCcch
Q 003178 533 MGLKMLVLDEADHLLDL-GFRKDVENIVDCLPR-RRQSLLFSATMPKE 578 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~-gf~~~i~~Il~~l~~-~~q~il~SATl~~~ 578 (842)
.++++|||||+|.+... .....+..+++.+.. ..|+|+.|-..|..
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~ 252 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPEL 252 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 35788999999987632 233445555555443 34555555444443
No 258
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=89.05 E-value=0.53 Score=62.58 Aligned_cols=65 Identities=25% Similarity=0.256 Sum_probs=44.7
Q ss_pred eeeehhhhhhhhhhcC--cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHH
Q 003178 401 QMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g--~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~ 472 (842)
.+++.|.+|+..++.+ +-++|+|..|+|||.. +-.++..+..... ..+..++.++||--.|..+.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~~------~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLPE------SERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhhc------ccCceEEEECCcHHHHHHHH
Confidence 5899999999999985 4678999999999985 3333333221110 01235888999987776543
No 259
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=88.97 E-value=0.41 Score=53.08 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=41.3
Q ss_pred hHhhhcccceeeeeehhhhhhhhh-hcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhH
Q 003178 390 TIKALTAAGYIQMTRVQEATLSAC-LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (842)
Q Consensus 390 l~~~L~~~g~~~~t~iQ~~aI~~i-l~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReL 467 (842)
.+..|...|+ +++.|.+.+..+ ..+++++|+|+||||||.. +-.++..+.... +.-+++++-.+.||
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~--------~~~rivtIEd~~El 190 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD--------PTERVFIIEDTGEI 190 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC--------CCceEEEEcCCCcc
Confidence 3444544454 456777777654 4578999999999999973 333333322111 11257777777776
No 260
>PRK14873 primosome assembly protein PriA; Provisional
Probab=88.71 E-value=0.8 Score=55.72 Aligned_cols=93 Identities=13% Similarity=-0.027 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH-h-hhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc
Q 003178 612 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-K-MNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 689 (842)
Q Consensus 612 ~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~-~-~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd 689 (842)
..|.+....++...+. .++.+||.+|.+..+..+...|+.. + ..+..+|++++..+|.+.+....+|+..|+|.|.
T Consensus 171 SGKTevyl~~i~~~l~--~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 171 EDWARRLAAAAAATLR--AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred CcHHHHHHHHHHHHHH--cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 3566666666666553 4668999999999999999999865 3 5688999999999999999999999999999997
Q ss_pred ccccCCCCCCcceeEEec
Q 003178 690 VSARGMDYPDVTSVVQVG 707 (842)
Q Consensus 690 v~arGlDip~V~~VI~yd 707 (842)
.+. =.=+++..+||..+
T Consensus 249 SAv-FaP~~~LgLIIvdE 265 (665)
T PRK14873 249 SAV-FAPVEDLGLVAIWD 265 (665)
T ss_pred eeE-EeccCCCCEEEEEc
Confidence 653 25567777777544
No 261
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.39 E-value=0.51 Score=54.13 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=13.8
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
..+++.|++|+|||..
T Consensus 137 n~l~l~G~~G~GKThL 152 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHL 152 (405)
T ss_pred CeEEEECCCCCcHHHH
Confidence 3578999999999984
No 262
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=88.00 E-value=0.53 Score=52.18 Aligned_cols=65 Identities=22% Similarity=0.344 Sum_probs=39.1
Q ss_pred hhhcccceeeeeehhhhhhhhhh-cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhH
Q 003178 392 KALTAAGYIQMTRVQEATLSACL-EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (842)
Q Consensus 392 ~~L~~~g~~~~t~iQ~~aI~~il-~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReL 467 (842)
..+...|. +++.|.+.|..+. .+.+++|+|+||||||.. +-.++..+.... +..+++++=.+.||
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~--------~~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA--------PEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC--------CCceEEEecCCccc
Confidence 33444444 5567777766554 467999999999999993 222333332111 11256777777776
No 263
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=87.57 E-value=0.86 Score=53.25 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=37.1
Q ss_pred cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 417 ~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
.++++.|+||||||..|++|.+ + .... -+||+-|--||+.......++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~l--l-~~~~----------s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNL--L-NYPG----------SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHH--H-hccC----------CEEEEECCCcHHHHHHHHHHHC
Confidence 4799999999999999999976 2 2211 2788889889987766655544
No 264
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=87.55 E-value=1.3 Score=54.06 Aligned_cols=90 Identities=10% Similarity=0.106 Sum_probs=72.4
Q ss_pred hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH-hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc
Q 003178 612 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 690 (842)
Q Consensus 612 ~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~-~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv 690 (842)
..|.+....++...+. .++.+||.+|-+..+..+...|+.. +.++..+|+++++.+|.....+..+|+..|+|.|..
T Consensus 228 SGKTEvYl~~i~~~L~--~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS 305 (730)
T COG1198 228 SGKTEVYLEAIAKVLA--QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS 305 (730)
T ss_pred CcHHHHHHHHHHHHHH--cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEech
Confidence 4455566666666553 4679999999999999888888754 889999999999999999999999999999999975
Q ss_pred cccCCCCCCcceeE
Q 003178 691 SARGMDYPDVTSVV 704 (842)
Q Consensus 691 ~arGlDip~V~~VI 704 (842)
+- =.=++++.+||
T Consensus 306 Al-F~Pf~~LGLII 318 (730)
T COG1198 306 AL-FLPFKNLGLII 318 (730)
T ss_pred hh-cCchhhccEEE
Confidence 42 34567777777
No 265
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=87.44 E-value=0.8 Score=52.10 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=14.6
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
.+++|.|++|+|||.+
T Consensus 56 ~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT 71 (394)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999995
No 266
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=87.24 E-value=0.41 Score=51.26 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=21.0
Q ss_pred eeehhhhhhhhhh----cCc-ceEEeeccCCCceee
Q 003178 402 MTRVQEATLSACL----EGK-DAVVKAKTGTGKSIA 432 (842)
Q Consensus 402 ~t~iQ~~aI~~il----~g~-dvii~A~TGSGKTla 432 (842)
+++.+.+++..+. .+. .+++.|++|+|||+.
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 4555555655443 223 578999999999984
No 267
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=87.22 E-value=0.49 Score=52.42 Aligned_cols=143 Identities=14% Similarity=0.155 Sum_probs=72.8
Q ss_pred eeeeeehhhhhhhhhhc----Cc---ceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHH
Q 003178 399 YIQMTRVQEATLSACLE----GK---DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (842)
Q Consensus 399 ~~~~t~iQ~~aI~~il~----g~---dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi 471 (842)
+..++|+|..++..+.. ++ -.++.||.|.||+.. ...+.+.++-..... .+ -|+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~l-A~~lA~~LlC~~~~~-----~~-----~c~~c------ 64 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAV-ALALAEHVLASGPDP-----AA-----AQRTR------ 64 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH-HHHHHHHHhCCCCCC-----CC-----cchHH------
Confidence 34678999998877653 33 478999999999985 333344443221100 00 11111
Q ss_pred HHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccccccccc
Q 003178 472 AAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF 551 (842)
Q Consensus 472 ~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf 551 (842)
..+ ..+.||.+.+....-..... +....|.|-.--.+.+.+... ......+++|||+||.|....
T Consensus 65 -~~~--~~g~HPD~~~i~~~p~~~~~-------k~~~~I~idqIR~l~~~~~~~----p~~g~~kV~iI~~ae~m~~~A- 129 (319)
T PRK08769 65 -QLI--AAGTHPDLQLVSFIPNRTGD-------KLRTEIVIEQVREISQKLALT----PQYGIAQVVIVDPADAINRAA- 129 (319)
T ss_pred -HHH--hcCCCCCEEEEecCCCcccc-------cccccccHHHHHHHHHHHhhC----cccCCcEEEEeccHhhhCHHH-
Confidence 011 12345555443211100000 000134343322333333322 223467899999999997653
Q ss_pred ccchhhhhhcccccccceeecc
Q 003178 552 RKDVENIVDCLPRRRQSLLFSA 573 (842)
Q Consensus 552 ~~~i~~Il~~l~~~~q~il~SA 573 (842)
...+.+++..-|....+|+.|.
T Consensus 130 aNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 130 CNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred HHHHHHHhhCCCCCCeEEEEEC
Confidence 4556667777666666666554
No 268
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=87.18 E-value=0.31 Score=60.53 Aligned_cols=39 Identities=23% Similarity=0.403 Sum_probs=27.3
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
.+++++||||||+|...++ ..+.++++..+....+||.+
T Consensus 119 ~~~KV~IIDEad~lt~~a~-NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGF-NALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 4678999999999987553 45566666666655555544
No 269
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=87.11 E-value=1.7 Score=52.87 Aligned_cols=140 Identities=20% Similarity=0.201 Sum_probs=76.0
Q ss_pred ehhhhhhhhhhcC--cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhc
Q 003178 404 RVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (842)
Q Consensus 404 ~iQ~~aI~~il~g--~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~ 481 (842)
.-|.+.+..++.. +-+++.|.-|=|||.+.-|.+. .+..... ...++|.+|+.+-+..+.+.+.+-+..
T Consensus 217 ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~~--------~~~iiVTAP~~~nv~~Lf~fa~~~l~~ 287 (758)
T COG1444 217 AEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLAG--------SVRIIVTAPTPANVQTLFEFAGKGLEF 287 (758)
T ss_pred HHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhcC--------CceEEEeCCCHHHHHHHHHHHHHhHHH
Confidence 3344455555553 3578999999999998665552 2222111 236999999999988888777665543
Q ss_pred CCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhhc
Q 003178 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDC 561 (842)
Q Consensus 482 ~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~ 561 (842)
. |+......... ........+...|=+-+|.... ..-++||||||=.+. .+.+..++..
T Consensus 288 l-g~~~~v~~d~~---g~~~~~~~~~~~i~y~~P~~a~-------------~~~DllvVDEAAaIp----lplL~~l~~~ 346 (758)
T COG1444 288 L-GYKRKVAPDAL---GEIREVSGDGFRIEYVPPDDAQ-------------EEADLLVVDEAAAIP----LPLLHKLLRR 346 (758)
T ss_pred h-CCccccccccc---cceeeecCCceeEEeeCcchhc-------------ccCCEEEEehhhcCC----hHHHHHHHhh
Confidence 2 22211111100 0001111122345555554432 114789999997652 2333444433
Q ss_pred ccccccceeecccCcc
Q 003178 562 LPRRRQSLLFSATMPK 577 (842)
Q Consensus 562 l~~~~q~il~SATl~~ 577 (842)
-+.++||.|+.-
T Consensus 347 ----~~rv~~sTTIhG 358 (758)
T COG1444 347 ----FPRVLFSTTIHG 358 (758)
T ss_pred ----cCceEEEeeecc
Confidence 245778888643
No 270
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=87.05 E-value=4.8 Score=48.60 Aligned_cols=68 Identities=6% Similarity=0.106 Sum_probs=46.0
Q ss_pred eehhhhhhhhhh---cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhh
Q 003178 403 TRVQEATLSACL---EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (842)
Q Consensus 403 t~iQ~~aI~~il---~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~ 479 (842)
.|.=.+-|..++ ..+-.++.+|=|-|||.+..+ ++-.+... .+.+++|++|...-+.++.+.+...+
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi-~l~~La~f---------~Gi~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAI-ILAAMISF---------LEIDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHH-HHHHHHHh---------cCCeEEEECCChhhHHHHHHHHHHHH
Confidence 343333344433 456778899999999997433 33333321 12469999999999999999888887
Q ss_pred h
Q 003178 480 K 480 (842)
Q Consensus 480 ~ 480 (842)
.
T Consensus 241 e 241 (752)
T PHA03333 241 H 241 (752)
T ss_pred H
Confidence 5
No 271
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.02 E-value=0.81 Score=47.86 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=24.9
Q ss_pred cceeeeecccccccccccccchhhhhhccccccc-ceeecccCcc
Q 003178 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ-SLLFSATMPK 577 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q-~il~SATl~~ 577 (842)
+.++|||||+|.+.... ...+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 34679999999875432 3334444544433333 4667766543
No 272
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=86.92 E-value=0.88 Score=56.00 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=16.6
Q ss_pred eEEeeccCCCceeeehhHHHHHHH
Q 003178 419 AVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 419 vii~A~TGSGKTlafllPil~~l~ 442 (842)
++|.|+||+|||++ +--++..+.
T Consensus 784 LYIyG~PGTGKTAT-VK~VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTAT-VYSVIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHH
Confidence 35999999999997 334455443
No 273
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=86.86 E-value=0.8 Score=56.58 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=53.2
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHh-----hhHHH-HhhcCcchhhhhhhHHHhhcceEEEEecccc
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMK-----MNVRE-MYSRKPQLYRDRISEEFRASKRLILVTSDVS 691 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~-----~~v~~-lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ 691 (842)
.+.++++.+||..-+.+.++.|..+. ..+.. +|+.|+..++..++++|.+|..+|||+|..+
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 45799999999999999999988763 32222 9999999999999999999999999999854
No 274
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=86.78 E-value=0.62 Score=53.02 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=35.2
Q ss_pred ceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH
Q 003178 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (842)
Q Consensus 418 dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~ 477 (842)
++++.|+||||||.++++|.+.. .. ..++|+-|--++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~---~~----------~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT---WP----------GSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc---CC----------CCEEEEccchhHHHHHHHHHHH
Confidence 47899999999999999997632 11 1378889988998766655443
No 275
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=86.72 E-value=0.83 Score=50.29 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=23.1
Q ss_pred cceeeeecccccccccccccchhhhhhccccccccee
Q 003178 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il 570 (842)
..++|||||+|.+........+..++...+...++|+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Il 136 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFII 136 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEE
Confidence 3578999999998433334455555665555555544
No 276
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=86.72 E-value=0.92 Score=49.87 Aligned_cols=67 Identities=31% Similarity=0.416 Sum_probs=39.0
Q ss_pred hHhhhcccceeeeeehhhhhhhhhh-cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhH
Q 003178 390 TIKALTAAGYIQMTRVQEATLSACL-EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (842)
Q Consensus 390 l~~~L~~~g~~~~t~iQ~~aI~~il-~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReL 467 (842)
.+..|.+.|. +++.|.+.+..++ .+++++|+|+||||||.. +-.++..+.... +.-+++++=.+.||
T Consensus 107 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~--------~~~ri~tiEd~~El 174 (299)
T TIGR02782 107 TLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND--------PTDRVVIIEDTREL 174 (299)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC--------CCceEEEECCchhh
Confidence 3444444443 4455666665544 467999999999999993 222332222110 11257777777776
No 277
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.62 E-value=0.38 Score=60.38 Aligned_cols=153 Identities=18% Similarity=0.172 Sum_probs=85.1
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHhhcc--------cCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCcee
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATS--------SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIG 486 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~~~~--------~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~ 486 (842)
.|++++..-..|+|||.+-+.-.+..+.+... .+......| -.|||+|. ++..||..++.+-... ++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tg-aTLII~P~-aIl~QW~~EI~kH~~~--~lK 448 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETG-ATLIICPN-AILMQWFEEIHKHISS--LLK 448 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecC-ceEEECcH-HHHHHHHHHHHHhccc--cce
Confidence 36778888999999999754444333211100 001111122 47999996 5668998888776543 345
Q ss_pred EEEEecceeeeeccccccCCCceEEecCccchhhhccccC--Cce-------------EEEecce--eeeeccccccccc
Q 003178 487 VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS--GLS-------------VRLMGLK--MLVLDEADHLLDL 549 (842)
Q Consensus 487 v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~--~~~-------------~~L~~l~--~lVlDEAh~lld~ 549 (842)
+....|-.+..... ...-..+|||++|+..|...|.... +.. ..|..+. -|+||||+.+-..
T Consensus 449 v~~Y~Girk~~~~~-~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess 527 (1394)
T KOG0298|consen 449 VLLYFGIRKTFWLS-PFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS 527 (1394)
T ss_pred EEEEechhhhcccC-chhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch
Confidence 55555533322111 1222348999999999976664331 100 0111122 3899999986542
Q ss_pred ccccchhhhhhcccccccceeecccC
Q 003178 550 GFRKDVENIVDCLPRRRQSLLFSATM 575 (842)
Q Consensus 550 gf~~~i~~Il~~l~~~~q~il~SATl 575 (842)
.....+++..++. .-.-+.|.|+
T Consensus 528 --sS~~a~M~~rL~~-in~W~VTGTP 550 (1394)
T KOG0298|consen 528 --SSAAAEMVRRLHA-INRWCVTGTP 550 (1394)
T ss_pred --HHHHHHHHHHhhh-hceeeecCCc
Confidence 3444445555543 2345667774
No 278
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=86.59 E-value=0.36 Score=57.64 Aligned_cols=62 Identities=19% Similarity=0.414 Sum_probs=50.4
Q ss_pred HHHhhcceEEEEeccccccCCCCCCcceeE--------EecCCCChHHHHHHhhcCCCCCC-CcceeEEec
Q 003178 675 EEFRASKRLILVTSDVSARGMDYPDVTSVV--------QVGIPPDREQYIHRLGRTGREGK-EGEGVLLLA 736 (842)
Q Consensus 675 ~~F~~g~~~VLVaTdv~arGlDip~V~~VI--------~yd~P~s~~~yiQRiGRaGR~G~-~G~~i~ll~ 736 (842)
++|..|+..|-|-+.+++-||-+..-+-|+ -..+||+.+.-||..|||.|.++ .+--|+|+-
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlI 921 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLI 921 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEe
Confidence 679999999999999999999987655444 57799999999999999999885 344555544
No 279
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=86.10 E-value=0.81 Score=51.46 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=25.7
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
...+++||||||.|.... ...+.+++...+....++++|
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 467899999999987544 344566666655555455554
No 280
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=86.00 E-value=1.1 Score=46.83 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=30.7
Q ss_pred ecceeeeecccccccccc-cccchhhhhhcccc-cccceeecccCcchh
Q 003178 533 MGLKMLVLDEADHLLDLG-FRKDVENIVDCLPR-RRQSLLFSATMPKEL 579 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~g-f~~~i~~Il~~l~~-~~q~il~SATl~~~l 579 (842)
..+++||||.+|.+.... ....+..+++.+.. ..++|+.|...|..+
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 357899999999987542 34555566665543 456666666777664
No 281
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=85.89 E-value=1 Score=53.81 Aligned_cols=47 Identities=23% Similarity=0.349 Sum_probs=29.2
Q ss_pred ecceeeeecccccccccc-cccchhhhhhcccc-cccceeecccCcchh
Q 003178 533 MGLKMLVLDEADHLLDLG-FRKDVENIVDCLPR-RRQSLLFSATMPKEL 579 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~g-f~~~i~~Il~~l~~-~~q~il~SATl~~~l 579 (842)
.++++||||++|.+.... ....+..+++.+.. ..++|+.|-..|..+
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 357889999999886432 23445566665544 456666555555544
No 282
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=85.73 E-value=0.82 Score=55.77 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=49.5
Q ss_pred eeeehhhhhhhhhhcC-----cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHH
Q 003178 401 QMTRVQEATLSACLEG-----KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g-----~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l 475 (842)
.|+..|..++..+.++ +..++.+.||||||+.+ .. +..... -.+|||+|+..+|.|+++.+
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~li--a~---l~~~~~---------r~vLIVt~~~~~A~~l~~dL 77 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTM--AN---VIARLQ---------RPTLVLAHNKTLAAQLYSEF 77 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHH--HH---HHHHhC---------CCEEEEECCHHHHHHHHHHH
Confidence 4888999998887543 25679999999999952 22 222111 03899999999999999999
Q ss_pred HHhhh
Q 003178 476 IALLK 480 (842)
Q Consensus 476 ~~l~~ 480 (842)
..++.
T Consensus 78 ~~~~~ 82 (652)
T PRK05298 78 KEFFP 82 (652)
T ss_pred HHhcC
Confidence 98874
No 283
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=85.62 E-value=0.21 Score=60.43 Aligned_cols=112 Identities=21% Similarity=0.313 Sum_probs=65.2
Q ss_pred ceEEeeccCCCceeeehhHHHHHHHhhcccCc--ccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEeccee
Q 003178 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSST--TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495 (842)
Q Consensus 418 dvii~A~TGSGKTlafllPil~~l~~~~~~~~--~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~ 495 (842)
-.|+.-..|-|||..-+.-++ ..+.... .........||+||+ .+..|+..++.+.. ....+.+.+.+|
T Consensus 154 ggIladd~glgkt~~ti~l~l----~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~-~~~~l~v~v~~g--- 224 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALIL----KQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVT-EEDKLSIYVYHG--- 224 (674)
T ss_pred cceEeeccccchHHHHHHHHH----hcccCCcchhhccccCceeEecch-HHHHHHHHHHhccC-CccceEEEEecc---
Confidence 467888899999997333222 2221111 001122347888997 55588888884443 333566666666
Q ss_pred eeeccccccCCCceEEecCccchhh-hccccCCceEEEecceeeeecccccccc
Q 003178 496 FKVDQRRLESDPCQILVATPGRLLD-HIENKSGLSVRLMGLKMLVLDEADHLLD 548 (842)
Q Consensus 496 ~~~~~~~l~~~~~~IIVaTPgrLl~-~L~~~~~~~~~L~~l~~lVlDEAh~lld 548 (842)
...+...+ ..++|+++||+.+-. -+. --.+-.||+||||.+.+
T Consensus 225 r~kd~~el--~~~dVVltTy~il~~~~l~--------~i~w~Riildea~~ikn 268 (674)
T KOG1001|consen 225 RTKDKSEL--NSYDVVLTTYDILKNSPLV--------KIKWLRIVLDEAHTIKN 268 (674)
T ss_pred cccccchh--cCCceEEeeHHHhhccccc--------ceeEEEEEeccccccCC
Confidence 22222333 236899999998863 111 12355699999998654
No 284
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=85.59 E-value=0.85 Score=52.53 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=21.9
Q ss_pred hhhhhhhhhcCcceEEeeccCCCceee
Q 003178 406 QEATLSACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 406 Q~~aI~~il~g~dvii~A~TGSGKTla 432 (842)
....+..+..++++++.+++|+|||..
T Consensus 184 le~l~~~L~~~~~iil~GppGtGKT~l 210 (459)
T PRK11331 184 IETILKRLTIKKNIILQGPPGVGKTFV 210 (459)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHH
Confidence 344556667799999999999999984
No 285
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=85.59 E-value=1 Score=54.75 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=64.9
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccc-ccCCCCCCcceeE
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS-ARGMDYPDVTSVV 704 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~-arGlDip~V~~VI 704 (842)
.+.+++|.+||..-+.+++..+++. ++.+..+||+++..+|..+++...+|+..|+|+|..+ ...+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 3568999999999999888877764 6889999999999999999999999999999999754 4567888899888
Q ss_pred E
Q 003178 705 Q 705 (842)
Q Consensus 705 ~ 705 (842)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 4
No 286
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.49 E-value=0.76 Score=49.74 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=21.2
Q ss_pred ceEEeeccCCCceeeehhHHHHHHHhhc
Q 003178 418 DAVVKAKTGTGKSIAFLLPAIEAVLKAT 445 (842)
Q Consensus 418 dvii~A~TGSGKTlafllPil~~l~~~~ 445 (842)
=|+|.+|||||||.+ +..++.++.+..
T Consensus 127 LILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 127 LILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred eEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 367999999999997 666777776544
No 287
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.18 E-value=1.4 Score=50.55 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.4
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.|.-+.++|+||+|||..
T Consensus 190 ~g~vi~lvGpnG~GKTTt 207 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTT 207 (420)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 466778999999999995
No 288
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.97 E-value=0.4 Score=39.73 Aligned_cols=26 Identities=42% Similarity=0.686 Sum_probs=19.4
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHH
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~ 442 (842)
.|..++|.+++|||||. ++-+++.++
T Consensus 22 ~g~~tli~G~nGsGKST--llDAi~~~L 47 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKST--LLDAIQTVL 47 (62)
T ss_pred CCcEEEEECCCCCCHHH--HHHHHHHHH
Confidence 35578999999999999 555554444
No 289
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=84.87 E-value=1.7 Score=43.89 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=22.9
Q ss_pred eEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccc
Q 003178 419 AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (842)
Q Consensus 419 vii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PT 464 (842)
.++.||++||||.- ++-.+.++... +.+++++-|.
T Consensus 4 ~~i~GpM~sGKS~e-Li~~~~~~~~~----------~~~v~~~kp~ 38 (176)
T PF00265_consen 4 EFITGPMFSGKSTE-LIRRIHRYEIA----------GKKVLVFKPA 38 (176)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHHHT----------T-EEEEEEES
T ss_pred EEEECCcCChhHHH-HHHHHHHHHhC----------CCeEEEEEec
Confidence 57889999999995 44444333222 2268888885
No 290
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=84.80 E-value=1 Score=52.25 Aligned_cols=45 Identities=16% Similarity=0.332 Sum_probs=25.0
Q ss_pred cceeeeecccccccccc-cccchhhhhhcccc-cccceeecccCcch
Q 003178 534 GLKMLVLDEADHLLDLG-FRKDVENIVDCLPR-RRQSLLFSATMPKE 578 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~g-f~~~i~~Il~~l~~-~~q~il~SATl~~~ 578 (842)
++++|||||+|.+.+.. ....+..++..+.. ..++|+.|-..|..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~ 240 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQK 240 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHH
Confidence 46789999999886532 22344445544433 34444444444443
No 291
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.75 E-value=0.84 Score=54.79 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=26.3
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
.+++++||||+|+|....+. .+.++++.-+.+..+||.|
T Consensus 123 gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred CCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEe
Confidence 46789999999999876553 4445555555555555554
No 292
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=84.70 E-value=1 Score=45.63 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=20.2
Q ss_pred hhcCcceEEeeccCCCceeeehhHHHHHHHh
Q 003178 413 CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 413 il~g~dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
+-.++++++.|++|+|||.. +..+...+..
T Consensus 44 ~~~~~~l~l~G~~G~GKThL-a~ai~~~~~~ 73 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHL-AVAIANEAIR 73 (178)
T ss_dssp -SC--EEEEEESTTSSHHHH-HHHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHH-HHHHHHHhcc
Confidence 34578999999999999996 4444555554
No 293
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=84.65 E-value=1.6 Score=52.56 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=38.8
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
..++++.||||||||..|++|-+... .. -++|+=|--|+........++.
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~---~~----------S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFW---ED----------SVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhC---CC----------CEEEEeCcHHHHHHHHHHHHHC
Confidence 35789999999999999999987432 11 2788899999988777666553
No 294
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=84.57 E-value=0.93 Score=57.22 Aligned_cols=75 Identities=13% Similarity=0.243 Sum_probs=64.3
Q ss_pred CceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc-ccccCCCCCCcceeEE
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-VSARGMDYPDVTSVVQ 705 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd-v~arGlDip~V~~VI~ 705 (842)
+.+++|.+||..-|.+.+..|++. ++.+..++|..+..++..+++.++.|+.+|+|+|. .+...+.+.++.+||.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 468999999999999999988764 45677889999999999999999999999999996 4456688899998884
No 295
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=84.17 E-value=0.69 Score=51.24 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=21.8
Q ss_pred cceeeeecccccccccccccchhhhhhccccccccee
Q 003178 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il 570 (842)
..++|||||+|.+... ....+..++...+....+|+
T Consensus 125 ~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il 160 (337)
T PRK12402 125 DYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFII 160 (337)
T ss_pred CCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEE
Confidence 4578999999987543 23344555555444444444
No 296
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=84.05 E-value=1.2 Score=54.29 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=24.9
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
.+++++||||+|+|....|. .+.+++...+.+..+|+.+
T Consensus 118 gr~KVIIIDEah~LT~~A~N-ALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFN-AMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHHH-HHHHHHHhcCCCeEEEEEE
Confidence 35789999999998765443 3444555555545444443
No 297
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=83.62 E-value=0.68 Score=54.85 Aligned_cols=43 Identities=28% Similarity=0.404 Sum_probs=33.9
Q ss_pred eeeehhhhhhhhhh----cCcceEEeeccCCCceeeehhHHHHHHHh
Q 003178 401 QMTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 401 ~~t~iQ~~aI~~il----~g~dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
+|+.||.+.+..+. .|+-.|..+|||+|||+..+-.++..|..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 58889998887654 48988999999999999866666665543
No 298
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=83.57 E-value=0.86 Score=52.92 Aligned_cols=46 Identities=13% Similarity=0.305 Sum_probs=26.6
Q ss_pred cceeeeecccccccccc-cccchhhhhhccc-ccccceeecccCcchh
Q 003178 534 GLKMLVLDEADHLLDLG-FRKDVENIVDCLP-RRRQSLLFSATMPKEL 579 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~g-f~~~i~~Il~~l~-~~~q~il~SATl~~~l 579 (842)
++++|||||+|.+.... ....+..+++.+. ...|+|+.|-+.|..+
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l 249 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDL 249 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHH
Confidence 56889999999986532 2334445554433 3455555554445543
No 299
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=83.52 E-value=1.5 Score=53.79 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.9
Q ss_pred CcceEEeeccCCCceeee
Q 003178 416 GKDAVVKAKTGTGKSIAF 433 (842)
Q Consensus 416 g~dvii~A~TGSGKTlaf 433 (842)
++-+.++||||+|||++.
T Consensus 185 g~Vi~lVGpnGvGKTTTi 202 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTT 202 (767)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456779999999999953
No 300
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=83.13 E-value=0.51 Score=52.54 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=25.2
Q ss_pred eeehhhhhhhhhhcCc----ceEEeeccCCCceee
Q 003178 402 MTRVQEATLSACLEGK----DAVVKAKTGTGKSIA 432 (842)
Q Consensus 402 ~t~iQ~~aI~~il~g~----dvii~A~TGSGKTla 432 (842)
++|+|...+..++... -.++.||.|.|||..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~ 38 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRAL 38 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHH
Confidence 4789999888877642 468999999999985
No 301
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=82.99 E-value=1.3 Score=50.11 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=15.3
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.++.+++++|||+|||..
T Consensus 205 ~~~ii~lvGptGvGKTTt 222 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTT 222 (407)
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356778999999999985
No 302
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=82.95 E-value=1.5 Score=47.34 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=26.5
Q ss_pred cceeeeeccccccc-ccccccchhhhhhcccccccceeecccCcch
Q 003178 534 GLKMLVLDEADHLL-DLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (842)
Q Consensus 534 ~l~~lVlDEAh~ll-d~gf~~~i~~Il~~l~~~~q~il~SATl~~~ 578 (842)
++++||||-+-+.. +......+..++....+..-++.+|||....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 57889999887754 2222333444444444444456689987553
No 303
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=82.67 E-value=0.84 Score=47.58 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=14.5
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
-++|+.+|.|+|||.+
T Consensus 49 P~liisGpPG~GKTTs 64 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTS 64 (333)
T ss_pred CceEeeCCCCCchhhH
Confidence 3789999999999996
No 304
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=82.52 E-value=1.9 Score=48.83 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=15.9
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.++.+.+.||||.|||++
T Consensus 202 ~~~vi~LVGPTGVGKTTT 219 (407)
T COG1419 202 QKRVIALVGPTGVGKTTT 219 (407)
T ss_pred cCcEEEEECCCCCcHHHH
Confidence 377888999999999996
No 305
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=82.52 E-value=1.2 Score=47.68 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=33.2
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHH
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~ 474 (842)
.+.++++.|++|+|||.. +.++...+...+ .-++.+++-+|+.++...
T Consensus 104 ~~~nl~l~G~~G~GKThL-a~Ai~~~l~~~g-----------~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHL-AIAIGNELLKAG-----------ISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHHcC-----------CeEEEEEHHHHHHHHHHH
Confidence 678999999999999995 344444454322 235667777887776654
No 306
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=82.31 E-value=4.3 Score=44.96 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=23.7
Q ss_pred EEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHH
Q 003178 420 VVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (842)
Q Consensus 420 ii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Q 470 (842)
++.++-|+|||.+.++-++..+..... ...++++ ||..-+.+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~--------~~~vi~~-~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP--------GRRVIIA-STYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS----------EEEEE-ESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC--------CcEEEEe-cCHHHHHH
Confidence 467899999999877666666554332 1245555 66654444
No 307
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=81.93 E-value=1 Score=50.51 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=27.6
Q ss_pred hhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHH
Q 003178 413 CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (842)
Q Consensus 413 il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA 468 (842)
+..+++++|+|+||||||.. +-+ +...-.. .-+++.+=.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTl--l~a---Ll~~i~~-------~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM--SKT---LISAIPP-------QERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHH--HHH---HHcccCC-------CCCEEEECCCcccc
Confidence 34578999999999999993 222 3322111 11466677777763
No 308
>PLN03025 replication factor C subunit; Provisional
Probab=81.82 E-value=1.8 Score=47.92 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=21.9
Q ss_pred cceeeeecccccccccccccchhhhhhccccccccee
Q 003178 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il 570 (842)
+.+++||||||.|.... ...+..++...+....+++
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il 134 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFAL 134 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEE
Confidence 36789999999987543 3444455554444443333
No 309
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=81.74 E-value=2.1 Score=50.28 Aligned_cols=69 Identities=23% Similarity=0.184 Sum_probs=44.4
Q ss_pred hhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhh
Q 003178 405 VQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (842)
Q Consensus 405 iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~ 479 (842)
-|-++|.. -.++-+||+|..|||||.+++=-+...++..+. ..+ .+ .+||+.|.+.++.-+.+++-.+.
T Consensus 216 EQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~--~l~--~k-~vlvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 216 EQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRG--PLQ--AK-PVLVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred hHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhcccc--ccc--cC-ceEEEcCcHHHHHHHHHhchhhc
Confidence 34444432 236678999999999999844333333333221 111 11 28999999999998888877764
No 310
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.74 E-value=1 Score=50.95 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=22.6
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceee
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~ 571 (842)
...+++||||||.|....+. .+.+.+...+....+|+.
T Consensus 118 ~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILA 155 (363)
T ss_pred CCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEE
Confidence 35689999999998764332 233444444444444443
No 311
>PRK04195 replication factor C large subunit; Provisional
Probab=81.44 E-value=2.2 Score=50.17 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.9
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
.+.+++.||+|+|||.+
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46789999999999984
No 312
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=81.08 E-value=1.4 Score=43.73 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=29.1
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeecccC
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl 575 (842)
...+++||||||.|.... ...+.+++..-|....++|.|...
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECCh
Confidence 468899999999987653 556677777777666666665443
No 313
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=80.92 E-value=2.7 Score=51.22 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=36.8
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~ 477 (842)
..++++.||||||||..|++|-+-. ... .++|+=|--|+........++
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~---~~g----------S~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLT---FKG----------SVIALDVKGELFELTSRARKA 187 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhc---CCC----------CEEEEeCCchHHHHHHHHHHh
Confidence 3589999999999999999998632 111 378888988887766655444
No 314
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.88 E-value=0.86 Score=49.63 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=16.1
Q ss_pred hcCcceEEeeccCCCceee
Q 003178 414 LEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTla 432 (842)
++..|+++.+|||||||+.
T Consensus 95 L~KSNILLiGPTGsGKTlL 113 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLL 113 (408)
T ss_pred eeeccEEEECCCCCcHHHH
Confidence 4456899999999999993
No 315
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.86 E-value=0.87 Score=52.71 Aligned_cols=39 Identities=31% Similarity=0.377 Sum_probs=28.5
Q ss_pred eeehhhhhhhhhhcCc--ceEEeeccCCCceeeehhHHHHHH
Q 003178 402 MTRVQEATLSACLEGK--DAVVKAKTGTGKSIAFLLPAIEAV 441 (842)
Q Consensus 402 ~t~iQ~~aI~~il~g~--dvii~A~TGSGKTlafllPil~~l 441 (842)
+++.|.+.+..+++.. =+++.||||||||.. +..+++.+
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~l 282 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSEL 282 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHh
Confidence 4678888888777654 467999999999996 44455444
No 316
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=80.40 E-value=1.8 Score=43.43 Aligned_cols=28 Identities=32% Similarity=0.618 Sum_probs=18.1
Q ss_pred ecceeeeeccccccc--ccccccchhhhhh
Q 003178 533 MGLKMLVLDEADHLL--DLGFRKDVENIVD 560 (842)
Q Consensus 533 ~~l~~lVlDEAh~ll--d~gf~~~i~~Il~ 560 (842)
..-+++||||+-.|- ..+|...+..+++
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 456899999999875 3457777777776
No 317
>PTZ00293 thymidine kinase; Provisional
Probab=80.39 E-value=1.5 Score=45.61 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=23.9
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccc
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PT 464 (842)
|+=.++.||++||||.- ||-.+......+ .+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTte-LLr~i~~y~~ag----------~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTE-LMRLVKRFTYSE----------KKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHH-HHHHHHHHHHcC----------CceEEEEec
Confidence 45568899999999975 343333332221 147788774
No 318
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=79.82 E-value=2.9 Score=47.40 Aligned_cols=52 Identities=29% Similarity=0.268 Sum_probs=31.2
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
.|.-+++.+++|+|||.. ++-+...+... +.+++|+.-. +-..|+..++..+
T Consensus 81 ~GslvLI~G~pG~GKStL-llq~a~~~a~~----------g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 81 PGSVILIGGDPGIGKSTL-LLQVAARLAKR----------GGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHhc----------CCeEEEEECC-cCHHHHHHHHHHc
Confidence 356788999999999994 33233233221 1157777653 4456766655554
No 319
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=79.79 E-value=1.6 Score=48.66 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=16.4
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..+++++|+|+||||||.
T Consensus 158 ~~~~nili~G~tgSGKTT 175 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTT 175 (332)
T ss_pred HcCCcEEEECCCCCCHHH
Confidence 457899999999999999
No 320
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=79.75 E-value=1.4 Score=46.05 Aligned_cols=14 Identities=43% Similarity=0.567 Sum_probs=12.3
Q ss_pred eEEeeccCCCceee
Q 003178 419 AVVKAKTGTGKSIA 432 (842)
Q Consensus 419 vii~A~TGSGKTla 432 (842)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999993
No 321
>PRK10689 transcription-repair coupling factor; Provisional
Probab=79.67 E-value=1.6 Score=56.53 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=63.1
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc-ccccCCCCCCcceeE
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-VSARGMDYPDVTSVV 704 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd-v~arGlDip~V~~VI 704 (842)
.+.+++|.+||+.-+.+++..|++. ++.+..+++..+..++..+++...+|..+|+|+|. .+...+.+.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 3568999999999999999988764 35667788999999999999999999999999995 444567788888877
Q ss_pred E
Q 003178 705 Q 705 (842)
Q Consensus 705 ~ 705 (842)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 3
No 322
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=79.66 E-value=1.5 Score=52.88 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=25.2
Q ss_pred Eecceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 532 L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
....+++||||+|.|....+ ..+.+.+...+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~-naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAF-NALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHHH-HHHHHHHHhCCCCeEEEEEe
Confidence 35678999999999875433 33444455555555555544
No 323
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=79.58 E-value=1.6 Score=45.98 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=31.2
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
..|.-+++.+++|+|||+. ++-++..+.+.. -++++++ +-+-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl-~~~~~~~~~~~g----------~~~~yi~-~e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSIL-SQRLAYGFLQNG----------YSVSYVS-TQLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHH-HHHHHHHHHhCC----------CcEEEEe-CCCCHHHHHHHHHHh
Confidence 4477889999999999995 233333333221 1467777 333445555555443
No 324
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.54 E-value=3 Score=49.23 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=12.8
Q ss_pred eEEeeccCCCceee
Q 003178 419 AVVKAKTGTGKSIA 432 (842)
Q Consensus 419 vii~A~TGSGKTla 432 (842)
++++||.|+|||.+
T Consensus 39 ~Lf~GppGtGKTTl 52 (504)
T PRK14963 39 YLFSGPRGVGKTTT 52 (504)
T ss_pred EEEECCCCCCHHHH
Confidence 58999999999996
No 325
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=79.52 E-value=14 Score=45.50 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=15.6
Q ss_pred HHHhhcCCCCCCCcceeEEecc
Q 003178 716 IHRLGRTGREGKEGEGVLLLAP 737 (842)
Q Consensus 716 iQRiGRaGR~G~~G~~i~ll~~ 737 (842)
-|.+||+-|.-+.=-+++|+..
T Consensus 700 NQAiGRviRHR~D~Gav~l~D~ 721 (945)
T KOG1132|consen 700 NQAIGRVIRHRNDYGAVILCDD 721 (945)
T ss_pred HHHHHHHHhhhcccceeeEeec
Confidence 5889999997665555556553
No 326
>PRK11823 DNA repair protein RadA; Provisional
Probab=79.51 E-value=2.9 Score=48.69 Aligned_cols=52 Identities=33% Similarity=0.306 Sum_probs=32.2
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
.|.-+++.+++|+|||+. ++-+...+.+. +.+++|+.- .+-..|+...+..+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL-~lq~a~~~a~~----------g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTL-LLQVAARLAAA----------GGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CCEEEEEECCCCCCHHHH-HHHHHHHHHhc----------CCeEEEEEc-cccHHHHHHHHHHc
Confidence 356788999999999994 33333222211 125788774 45567777666554
No 327
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=79.48 E-value=2.7 Score=42.92 Aligned_cols=90 Identities=14% Similarity=0.207 Sum_probs=49.7
Q ss_pred ceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeee
Q 003178 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497 (842)
Q Consensus 418 dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~ 497 (842)
=-++++|+.||||.. +|+.+.+.... +.++++..|-.. ..+.. + .+..-.| ..
T Consensus 6 l~~i~gpM~SGKT~e----Ll~r~~~~~~~-------g~~v~vfkp~iD----------~R~~~--~-~V~Sr~G-~~-- 58 (201)
T COG1435 6 LEFIYGPMFSGKTEE----LLRRARRYKEA-------GMKVLVFKPAID----------TRYGV--G-KVSSRIG-LS-- 58 (201)
T ss_pred EEEEEccCcCcchHH----HHHHHHHHHHc-------CCeEEEEecccc----------ccccc--c-eeeeccC-Cc--
Confidence 357899999999995 33334333222 235788777321 11100 0 1111111 11
Q ss_pred eccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccccc
Q 003178 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547 (842)
Q Consensus 498 ~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~ll 547 (842)
...++|-.+..+.+.+..... ...+++|.||||+-+.
T Consensus 59 ---------~~A~~i~~~~~i~~~i~~~~~----~~~~~~v~IDEaQF~~ 95 (201)
T COG1435 59 ---------SEAVVIPSDTDIFDEIAALHE----KPPVDCVLIDEAQFFD 95 (201)
T ss_pred ---------ccceecCChHHHHHHHHhccc----CCCcCEEEEehhHhCC
Confidence 135667777778887765421 1137899999999643
No 328
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=79.36 E-value=1.7 Score=49.17 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=18.4
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHH
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~ 442 (842)
+..++|++|||||||.. +-.++.++.
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 44688999999999994 333444443
No 329
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=79.35 E-value=1.4 Score=48.48 Aligned_cols=39 Identities=23% Similarity=0.406 Sum_probs=25.2
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
...++|||||||.|... -...+...+..-+....+++.+
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 46889999999998763 2444555555555455555544
No 330
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.33 E-value=3.5 Score=48.83 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=26.4
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
.+++++||||||+|....| ..+.+++...|....+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 3578999999999886544 34555666666565555543
No 331
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=79.29 E-value=3 Score=47.86 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.0
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+.-+++++|||+|||..
T Consensus 223 ~~vi~lvGptGvGKTTt 239 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTS 239 (432)
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34477999999999995
No 332
>PRK06835 DNA replication protein DnaC; Validated
Probab=79.03 E-value=1.8 Score=48.24 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=19.7
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHh
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
+.++++.|+||+|||.. +..+...+..
T Consensus 183 ~~~Lll~G~~GtGKThL-a~aIa~~l~~ 209 (329)
T PRK06835 183 NENLLFYGNTGTGKTFL-SNCIAKELLD 209 (329)
T ss_pred CCcEEEECCCCCcHHHH-HHHHHHHHHH
Confidence 57899999999999984 3344444443
No 333
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=79.01 E-value=1.4 Score=49.85 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=18.5
Q ss_pred cceEEeeccCCCceeeehhHHHHHHHh
Q 003178 417 KDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 417 ~dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
.+++|.|+||+|||.+ .--+++.+..
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHHHh
Confidence 3699999999999996 3334444443
No 334
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=78.89 E-value=2.9 Score=50.71 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=24.1
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
.+.++|||||+|.|....+ ..+.+++...+....+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 4678999999998765433 33445555544455455443
No 335
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=78.67 E-value=2.5 Score=54.99 Aligned_cols=61 Identities=21% Similarity=0.307 Sum_probs=46.1
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhc
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~ 481 (842)
.+.+++|.|..|||||.+...-++..++..... ..-.+|||+-|+..|..+..++..-+..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~------~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPL------DVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCC------ChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 477999999999999998666666666654211 1125899999999999999888776643
No 336
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=78.65 E-value=2.1 Score=48.87 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=33.9
Q ss_pred hhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHH
Q 003178 410 LSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (842)
Q Consensus 410 I~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Q 470 (842)
||.-...++++|.|.||||||.+ +-+++..+...+ -+++|.=|.-+....
T Consensus 9 l~~~~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~g----------~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 9 LPKDSENRHILIIGATGSGKTQA-IRHLLDQIRARG----------DRAIIYDPKGEFTER 58 (386)
T ss_dssp E-GGGGGG-EEEEE-TTSSHHHH-HHHHHHHHHHTT-----------EEEEEEETTHHHHH
T ss_pred cccchhhCcEEEECCCCCCHHHH-HHHHHHHHHHcC----------CEEEEEECCchHHHH
Confidence 34456688999999999999974 566776665543 258888888776543
No 337
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=78.51 E-value=3.1 Score=49.33 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=54.8
Q ss_pred EEEEecchhHHHHHHHHHHHHh-----hhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc-----ccccC-CCCCCcce
Q 003178 634 VIVFCSTGMVTSLLYLLLREMK-----MNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-----VSARG-MDYPDVTS 702 (842)
Q Consensus 634 iIVF~~s~~~~~~l~~~L~~~~-----~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd-----v~arG-lDip~V~~ 702 (842)
+||++||++-|.++++.+...+ +.+..++|+++...+... ++.| .+|||||+ .+.++ +++..|.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---LKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---HhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 9999999999999999988763 456799999887766644 4446 99999997 45566 89999999
Q ss_pred eEE
Q 003178 703 VVQ 705 (842)
Q Consensus 703 VI~ 705 (842)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 883
No 338
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=78.33 E-value=2.1 Score=44.80 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=13.2
Q ss_pred ceEEeeccCCCcee
Q 003178 418 DAVVKAKTGTGKSI 431 (842)
Q Consensus 418 dvii~A~TGSGKTl 431 (842)
++++.||.|.|||.
T Consensus 52 h~lf~GPPG~GKTT 65 (233)
T PF05496_consen 52 HMLFYGPPGLGKTT 65 (233)
T ss_dssp EEEEESSTTSSHHH
T ss_pred eEEEECCCccchhH
Confidence 68999999999998
No 339
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=78.23 E-value=3.2 Score=47.37 Aligned_cols=47 Identities=26% Similarity=0.366 Sum_probs=32.3
Q ss_pred cceeeeeccccccccc-ccccchhhhhhccccc-ccceeecccCcchhh
Q 003178 534 GLKMLVLDEADHLLDL-GFRKDVENIVDCLPRR-RQSLLFSATMPKELV 580 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~-gf~~~i~~Il~~l~~~-~q~il~SATl~~~l~ 580 (842)
++++++||.++.+... .....+..+++.+... .|+|+.|-..|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6788999999987754 3455555666666543 477777777777653
No 340
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=77.93 E-value=0.65 Score=46.95 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=27.8
Q ss_pred ecceeeeecccccccccccccchhhhhhccccc-ccceeecc
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR-RQSLLFSA 573 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~-~q~il~SA 573 (842)
.+.+++++||...-+|......+..++..+... .++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 356889999999988877666666666554333 45555543
No 341
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.80 E-value=1.5 Score=51.35 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=24.6
Q ss_pred Eecceeeeecccccccccccccchhhhhhcccccccceee
Q 003178 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571 (842)
Q Consensus 532 L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~ 571 (842)
....+++||||+|.|....| ..+.+.+...|+...+|+.
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILA 152 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEE
Confidence 35688999999999876543 3344455554444444443
No 342
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=77.54 E-value=2.9 Score=48.39 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=25.1
Q ss_pred ceeeeeccccccc-ccccccchhhhhhcccccccceeecccCcc
Q 003178 535 LKMLVLDEADHLL-DLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (842)
Q Consensus 535 l~~lVlDEAh~ll-d~gf~~~i~~Il~~l~~~~q~il~SATl~~ 577 (842)
.++||||.|-++. +......+..+.....+..-++.++||...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH
Confidence 3789999996543 222334445555555555556667777643
No 343
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=77.50 E-value=1.7 Score=44.11 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=23.9
Q ss_pred eeehhhhhhhhhh-cCcceEEeeccCCCceee
Q 003178 402 MTRVQEATLSACL-EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 402 ~t~iQ~~aI~~il-~g~dvii~A~TGSGKTla 432 (842)
+++-|.+.+...+ .+..++++++||||||..
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 4566777776555 477899999999999993
No 344
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=77.29 E-value=3.7 Score=49.89 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=35.6
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHH
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l 475 (842)
..++++.|+||||||..+++|.+.. ... .+||+=|--|+........
T Consensus 175 ~~HvlviapTgSGKgvg~ViPnLL~---~~~----------S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLVVPTLLS---WGH----------SSVITDLKGELWALTAGWR 221 (636)
T ss_pred CceEEEEecCCCCCceEEEccchhh---CCC----------CEEEEeCcHHHHHHHHHHH
Confidence 3689999999999999999998732 111 3789999989976555443
No 345
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=77.20 E-value=3.8 Score=49.82 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=36.5
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~ 477 (842)
..++++.|+||||||..+.+|-+ +.... -++|+=|--|++.......++
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnL---L~~~g----------S~VV~DpKgEl~~~Ta~~R~~ 272 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTA---LKWGG----------PLVVLDPSTEVAPMVSEHRRD 272 (641)
T ss_pred CceEEEEeCCCCCccceEehhhh---hcCCC----------CEEEEeCcHHHHHHHHHHHHH
Confidence 35789999999999999999975 22211 278888998997766655433
No 346
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.15 E-value=2.8 Score=50.31 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=25.5
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
...+++||||||.|....+ ..+.+++...|...-+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe
Confidence 4678999999999876543 34455555555555455544
No 347
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=77.00 E-value=1.4 Score=47.39 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=26.6
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhH
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReL 467 (842)
..+.+++++|+||||||.. +-.++..+-.. .-+++++-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~~----------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPPE----------DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHTT----------TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchH-HHHHhhhcccc----------ccceEEeccccce
Confidence 3478999999999999994 23333322221 1156777666666
No 348
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=76.50 E-value=1.5 Score=49.46 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.5
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.+.-++|+||||||||..
T Consensus 133 ~~glilI~GpTGSGKTTt 150 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL 150 (358)
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 466789999999999994
No 349
>PF12846 AAA_10: AAA-like domain
Probab=75.66 E-value=2.1 Score=46.10 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=29.4
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHH
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELAS 469 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~ 469 (842)
+.+++|.|+||||||.+.. .++..+.... ..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~g----------~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRRG----------PRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHcC----------CCEEEEcCCchHHH
Confidence 4678999999999998644 5555554433 24777777655544
No 350
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=75.45 E-value=1.5 Score=46.23 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=28.9
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
|.-+++.|++|+|||...+--+.+.+ .. +-+++|+.= .+-..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~-~~----------g~~~~y~~~-e~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGAL-KQ----------GKKVYVITT-ENTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH-hC----------CCEEEEEEc-CCCHHHHHHHHHHC
Confidence 56788999999999984222222222 11 114666654 33445666655554
No 351
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.31 E-value=1.6 Score=50.79 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=13.3
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
.++++||.|+|||.+
T Consensus 42 a~Lf~GP~GtGKTTl 56 (484)
T PRK14956 42 AYIFFGPRGVGKTTI 56 (484)
T ss_pred EEEEECCCCCCHHHH
Confidence 369999999999995
No 352
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=75.07 E-value=1.5 Score=48.82 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=27.1
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
...+++|||+||.|.... ...+.+++..-|...-+++.|
T Consensus 106 g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred CCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 467899999999998653 455666677755555555544
No 353
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.04 E-value=3.9 Score=40.49 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=15.4
Q ss_pred eEEeeccCCCceeeehhHH
Q 003178 419 AVVKAKTGTGKSIAFLLPA 437 (842)
Q Consensus 419 vii~A~TGSGKTlafllPi 437 (842)
.|+.++.|||||..|....
T Consensus 5 ~IvaG~NGsGKstv~~~~~ 23 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTL 23 (187)
T ss_pred EEEecCCCCCceeeeeccc
Confidence 4688999999999876543
No 354
>PF05729 NACHT: NACHT domain
Probab=74.98 E-value=3 Score=40.47 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=17.2
Q ss_pred ceEEeeccCCCceeeehhHHHHHHHh
Q 003178 418 DAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 418 dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
-++|.|+.|+|||.. +--++..+..
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHHh
Confidence 468999999999994 3334444443
No 355
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=74.41 E-value=3 Score=43.56 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=31.3
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
.|..++|.|++|+|||+..+--+.+.+.+.+. +++|++ +.+-..++.+.+..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge----------~vlyvs-~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE----------KVLYVS-FEEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT------------EEEEE-SSS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC----------cEEEEE-ecCCHHHHHHHHHHc
Confidence 36788999999999998522223333333121 467766 345556666666654
No 356
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=74.39 E-value=3.1 Score=50.13 Aligned_cols=159 Identities=19% Similarity=0.211 Sum_probs=88.5
Q ss_pred eeeeehhhhhhhhhhcCc----------ceEEeeccCC--CceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhH
Q 003178 400 IQMTRVQEATLSACLEGK----------DAVVKAKTGT--GKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~----------dvii~A~TGS--GKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReL 467 (842)
..++..|.+++-.+.+-+ -.+|-...|- |.|.| --|++..++... ++|.++-+..|
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvA--giIfeNyLkGRK----------rAlW~SVSsDL 330 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVA--GIIFENYLKGRK----------RALWFSVSSDL 330 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeE--EEEehhhhcccc----------eeEEEEecccc
Confidence 356677888876655422 2334434444 55665 335666665432 69999999999
Q ss_pred HHHHHHHHHHhhhcCCceeEEEEecce--eeeeccccccCCCceEEecCccchhhhccccCCc-eEEEe--------c-c
Q 003178 468 ASQIAAEAIALLKNHDGIGVLTLVGGT--RFKVDQRRLESDPCQILVATPGRLLDHIENKSGL-SVRLM--------G-L 535 (842)
Q Consensus 468 A~Qi~~~l~~l~~~~~~i~v~~l~Gg~--~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~-~~~L~--------~-l 535 (842)
-....+.+..+.. ++|.|..+.--. .+..+...-. .-.||+||+-.|+-.-....+. ...+. + =
T Consensus 331 KfDAERDL~DigA--~~I~V~alnK~KYakIss~en~n~--krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~fe 406 (1300)
T KOG1513|consen 331 KFDAERDLRDIGA--TGIAVHALNKFKYAKISSKENTNT--KRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFE 406 (1300)
T ss_pred ccchhhchhhcCC--CCccceehhhcccccccccccCCc--cceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccc
Confidence 8888888877754 356555432110 0001111111 1369999998886544322110 00010 1 2
Q ss_pred eeeeecccccccccc---------cccchhhhhhcccccccceeecccC
Q 003178 536 KMLVLDEADHLLDLG---------FRKDVENIVDCLPRRRQSLLFSATM 575 (842)
Q Consensus 536 ~~lVlDEAh~lld~g---------f~~~i~~Il~~l~~~~q~il~SATl 575 (842)
.+||+||||+--+.. -...+..+-+.|| +.++|.-|||-
T Consensus 407 GvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 407 GVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred eeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 479999999865421 2334445555555 56688889984
No 357
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=74.07 E-value=20 Score=42.88 Aligned_cols=133 Identities=17% Similarity=0.218 Sum_probs=78.4
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcC-CceeEEEEecc
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH-DGIGVLTLVGG 493 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~-~~i~v~~l~Gg 493 (842)
..+-.+..-|---|||. |++|++..++..- .++++.|++.-|..++-+.+++...+... +.-.+.-.-+
T Consensus 201 KQkaTVFLVPRRHGKTW-f~VpiIsllL~s~--------~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~- 270 (668)
T PHA03372 201 KQKATVFLVPRRHGKTW-FIIPIISFLLKNI--------IGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD- 270 (668)
T ss_pred hccceEEEecccCCcee-hHHHHHHHHHHhh--------cCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC-
Confidence 44556666788899999 5999998888742 35689999999998888777766554322 2111111111
Q ss_pred eeeeeccccccCCCceEEecCccchhhh--cc-ccCCceEEEecceeeeecccccccccccccchhhhhhccc-ccccce
Q 003178 494 TRFKVDQRRLESDPCQILVATPGRLLDH--IE-NKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP-RRRQSL 569 (842)
Q Consensus 494 ~~~~~~~~~l~~~~~~IIVaTPgrLl~~--L~-~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~-~~~q~i 569 (842)
-.|.+.-||.=-.. +. .+.+ ..+=.++.++++||||-+-- ..+..|+-.+. +++++|
T Consensus 271 --------------~tI~~s~pg~Kst~~fasc~n~N-siRGQ~fnll~VDEA~FI~~----~a~~tilgfm~q~~~KiI 331 (668)
T PHA03372 271 --------------NVISIDHRGAKSTALFASCYNTN-SIRGQNFHLLLVDEAHFIKK----DAFNTILGFLAQNTTKII 331 (668)
T ss_pred --------------cEEEEecCCCcceeeehhhccCc-cccCCCCCEEEEehhhccCH----HHHHHhhhhhcccCceEE
Confidence 13333333321100 00 0000 12234688999999997542 23444554433 567888
Q ss_pred eecccCc
Q 003178 570 LFSATMP 576 (842)
Q Consensus 570 l~SATl~ 576 (842)
+.|-|-+
T Consensus 332 fISS~Ns 338 (668)
T PHA03372 332 FISSTNT 338 (668)
T ss_pred EEeCCCC
Confidence 8887753
No 358
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=74.01 E-value=3.6 Score=49.32 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=64.4
Q ss_pred CCCceEEEEecchhHHHHHH----HHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-cccCCCCCCccee
Q 003178 629 TPDYKVIVFCSTGMVTSLLY----LLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-SARGMDYPDVTSV 703 (842)
Q Consensus 629 ~~~~kiIVF~~s~~~~~~l~----~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-~arGlDip~V~~V 703 (842)
..++++..-+||---|++.+ .+|...++.|..+.|.+....|..+++...+|.++|+|.|-+ +.-.+++.+.-+|
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLV 388 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLV 388 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEE
Confidence 35789999999965555554 455556889999999999999999999999999999999975 4578999999988
Q ss_pred EE
Q 003178 704 VQ 705 (842)
Q Consensus 704 I~ 705 (842)
|.
T Consensus 389 Ii 390 (677)
T COG1200 389 II 390 (677)
T ss_pred EE
Confidence 84
No 359
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.97 E-value=4.5 Score=50.43 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=24.6
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceee
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~ 571 (842)
.+.+++||||||+|....+ ..+.+++...|....+|+.
T Consensus 118 gk~KViIIDEAh~LT~eAq-NALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSF-NALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhccCCCeEEEEE
Confidence 3578999999999865433 4445555555555555554
No 360
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=73.90 E-value=1.8 Score=47.99 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=27.2
Q ss_pred Eecceeeeecccccccccccccchhhhhhcccccccceeecc
Q 003178 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (842)
Q Consensus 532 L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SA 573 (842)
....+++|||+||+|.... ...+.+++..-|++.-+|+.|.
T Consensus 106 ~~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~ 146 (319)
T PRK06090 106 LNGYRLFVIEPADAMNESA-SNALLKTLEEPAPNCLFLLVTH 146 (319)
T ss_pred cCCceEEEecchhhhCHHH-HHHHHHHhcCCCCCeEEEEEEC
Confidence 3468999999999997643 4556666666555544444443
No 361
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=73.82 E-value=3 Score=44.05 Aligned_cols=52 Identities=17% Similarity=0.117 Sum_probs=33.0
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
.|..++|.|++|+|||+..+--+.+.+ ..+ -.++|++ +-+-..|+.+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~-~~g----------e~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL-QMG----------EPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcC----------CcEEEEE-eeCCHHHHHHHHHHh
Confidence 367889999999999994222223333 211 1477776 456667777776654
No 362
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=73.77 E-value=3.9 Score=50.37 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=14.0
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
.++++.||+|+|||..
T Consensus 53 ~slLL~GPpGtGKTTL 68 (725)
T PRK13341 53 GSLILYGPPGVGKTTL 68 (725)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3689999999999984
No 363
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=73.71 E-value=1.4 Score=49.17 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=27.3
Q ss_pred Eecceeeeecccccccccccccchhhhhhcccccccceeecc
Q 003178 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (842)
Q Consensus 532 L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SA 573 (842)
....+++|||+||+|.... ...+.+++..-|...-+|+.|.
T Consensus 106 ~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDAA-ANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred cCCceEEEEcchHhhCHHH-HHHHHHHhcCCCCCeEEEEEEC
Confidence 3568999999999998653 4556666666554444444443
No 364
>PRK13342 recombination factor protein RarA; Reviewed
Probab=73.66 E-value=4.3 Score=46.70 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=13.6
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
.+++.||+|+|||..
T Consensus 38 ~ilL~GppGtGKTtL 52 (413)
T PRK13342 38 SMILWGPPGTGKTTL 52 (413)
T ss_pred eEEEECCCCCCHHHH
Confidence 688999999999984
No 365
>PRK10436 hypothetical protein; Provisional
Probab=73.64 E-value=1.8 Score=50.40 Aligned_cols=39 Identities=31% Similarity=0.460 Sum_probs=25.5
Q ss_pred eeehhhhhhhhhhc--CcceEEeeccCCCceeeehhHHHHHH
Q 003178 402 MTRVQEATLSACLE--GKDAVVKAKTGTGKSIAFLLPAIEAV 441 (842)
Q Consensus 402 ~t~iQ~~aI~~il~--g~dvii~A~TGSGKTlafllPil~~l 441 (842)
+.+.|.+.+..++. +.-++|+||||||||.. +..++..+
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 34556666665544 44678999999999995 33444443
No 366
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=73.61 E-value=8.3 Score=49.10 Aligned_cols=98 Identities=18% Similarity=0.132 Sum_probs=71.9
Q ss_pred CCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEec
Q 003178 628 GTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVG 707 (842)
Q Consensus 628 ~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd 707 (842)
+....++|||+.-....+.+...+...++.....-+ .++-...+..|++ --.+|+-+...+-|+|+=+..+|+..+
T Consensus 1218 k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~e 1293 (1394)
T KOG0298|consen 1218 KNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVE 1293 (1394)
T ss_pred cCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheec
Confidence 345569999988777766666666655555443333 2334455566665 223455677788999999999999999
Q ss_pred CCCChHHHHHHhhcCCCCCCCc
Q 003178 708 IPPDREQYIHRLGRTGREGKEG 729 (842)
Q Consensus 708 ~P~s~~~yiQRiGRaGR~G~~G 729 (842)
+-.++..-.|.+||..|.|+.-
T Consensus 1294 PiLN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1294 PILNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred cccCchHHHhhhhhhhhccccc
Confidence 9999999999999999999654
No 367
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=73.49 E-value=4.5 Score=44.09 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=15.2
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.++.++++||||+|||..
T Consensus 193 ~~~vi~~vGptGvGKTTt 210 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTT 210 (282)
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356788999999999985
No 368
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=73.43 E-value=4.7 Score=49.31 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=52.7
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.+++-|.+++... ...++|.|..|||||.+ +.-=+.++.....- .+-.+|.++=|+-.|.++..++.++++
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~v-lt~Ria~li~~~~v------~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRV-LTERIAYLIAAGGV------DPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhh-HHHHHHHHHHcCCc------ChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 4678899998776 66788899999999998 33334444443221 122489999999999999999998875
No 369
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=73.27 E-value=1.1 Score=45.06 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=25.7
Q ss_pred ceEEecCccchhhhccccCCceEEEecceeeeeccccccccc
Q 003178 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549 (842)
Q Consensus 508 ~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~ 549 (842)
++|||++..-|++-.......... .+-.+|||||||.|.+.
T Consensus 120 adivi~~y~yl~~~~~~~~~~~~~-~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 120 ADIVICNYNYLFDPSIRKSLFGID-LKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp -SEEEEETHHHHSHHHHHHHCT---CCCEEEEETTGGGCGGG
T ss_pred CCEEEeCHHHHhhHHHHhhhcccc-ccCcEEEEecccchHHH
Confidence 799999998887643222100011 24468999999998764
No 370
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=73.12 E-value=17 Score=42.73 Aligned_cols=90 Identities=19% Similarity=0.278 Sum_probs=68.7
Q ss_pred CceEEEEecchhHHHHHHHHHHHHh----hhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc-----ccccC-CCCCCc
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREMK----MNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-----VSARG-MDYPDV 700 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~~----~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd-----v~arG-lDip~V 700 (842)
...+||.+||++-+.++...+.+.+ +...+++|+.+...+.+-+++ -+.|+|||. .+..| +|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccce
Confidence 3469999999999999999988763 457789999887766655442 478999996 44454 788899
Q ss_pred ceeE--------EecCCCChHHHHHHhhcCCC
Q 003178 701 TSVV--------QVGIPPDREQYIHRLGRTGR 724 (842)
Q Consensus 701 ~~VI--------~yd~P~s~~~yiQRiGRaGR 724 (842)
+++| ..++-..+...++.++|+-|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 9988 34444567777888888877
No 371
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=73.07 E-value=1.7 Score=53.96 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=47.4
Q ss_pred ceEEecCccchh-hhccccCCceEEEecceeeeecccccccccccccchhhhhhcccccccceeecccCc
Q 003178 508 CQILVATPGRLL-DHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (842)
Q Consensus 508 ~~IIVaTPgrLl-~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~ 576 (842)
..|+++||..|. |+|... +.+..+..|||||||++....-...+..+...-.+..-+.+|||.+.
T Consensus 8 ggi~~~T~rIl~~DlL~~r----i~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGI----IPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred CCEEEEechhhHhHHhcCC----CCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 479999999986 555543 67789999999999999765544445555554445556788888854
No 372
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=72.99 E-value=5.2 Score=48.38 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=36.9
Q ss_pred cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 417 ~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
.++++.||||||||..+.+|-+ +.... -++|+=|--|++......-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnL---L~~~g----------S~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTA---LKYGG----------PLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhh---hcCCC----------CEEEEEChHHHHHHHHHHHHHc
Confidence 5899999999999999999964 33221 2789999999977766544433
No 373
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=72.95 E-value=3.8 Score=47.62 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=55.1
Q ss_pred eEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-----cccC----CCCCC
Q 003178 633 KVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----SARG----MDYPD 699 (842)
Q Consensus 633 kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-----~arG----lDip~ 699 (842)
-.|||.||++-+.++.+.|... ++.+..|.|+|....+++++.. ...|+|||.- +..+ =++..
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 3899999999999999999875 7889999999999999999876 6779999972 2211 24666
Q ss_pred cceeEE
Q 003178 700 VTSVVQ 705 (842)
Q Consensus 700 V~~VI~ 705 (842)
|.+.|.
T Consensus 341 vkcLVl 346 (731)
T KOG0347|consen 341 VKCLVL 346 (731)
T ss_pred ceEEEE
Confidence 777663
No 374
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=72.87 E-value=5.4 Score=45.05 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=13.8
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
++|+.+|.|+|||..
T Consensus 50 SmIl~GPPG~GKTTl 64 (436)
T COG2256 50 SMILWGPPGTGKTTL 64 (436)
T ss_pred eeEEECCCCCCHHHH
Confidence 789999999999994
No 375
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=72.71 E-value=11 Score=44.45 Aligned_cols=75 Identities=23% Similarity=0.215 Sum_probs=50.9
Q ss_pred eeeehhhhhhhhhhc------C----cceEEeeccCCCceeeehhHHHH-HHHhhcccCcccccCceEEEEeccchhHHH
Q 003178 401 QMTRVQEATLSACLE------G----KDAVVKAKTGTGKSIAFLLPAIE-AVLKATSSSTTQLVPPIYVLILCPTRELAS 469 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~------g----~dvii~A~TGSGKTlafllPil~-~l~~~~~~~~~~~~~~~~~LIL~PTReLA~ 469 (842)
.+-|+|.-++-.++. + +..+|..|-+-|||.....-+.. .+.... .+-...|++|+.+-|.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~--------~~~~~~i~A~s~~qa~ 132 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR--------SGAGIYILAPSVEQAA 132 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh--------cCCcEEEEeccHHHHH
Confidence 467889988888773 1 35688899999999843322222 222221 1225899999999999
Q ss_pred HHHHHHHHhhhcCC
Q 003178 470 QIAAEAIALLKNHD 483 (842)
Q Consensus 470 Qi~~~l~~l~~~~~ 483 (842)
+....++..+...+
T Consensus 133 ~~F~~ar~mv~~~~ 146 (546)
T COG4626 133 NSFNPARDMVKRDD 146 (546)
T ss_pred HhhHHHHHHHHhCc
Confidence 98888887776543
No 376
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=72.61 E-value=1.7 Score=48.66 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=25.4
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
...+++|||+||+|.... ...+.+.+..-|+..-+|+.|
T Consensus 131 ~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t 169 (342)
T PRK06964 131 GGARVVVLYPAEALNVAA-ANALLKTLEEPPPGTVFLLVS 169 (342)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHhcCCCcCcEEEEEE
Confidence 467899999999997653 344555566544444444443
No 377
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=72.55 E-value=2.4 Score=48.74 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=34.3
Q ss_pred hhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHH
Q 003178 410 LSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (842)
Q Consensus 410 I~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Q 470 (842)
|+.-...++++|.|+||||||.+ +..++..+.... .+++|+=|..++...
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~~----------~~~vi~D~kg~~~~~ 85 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRARG----------DRAIIYDPNGGFVSK 85 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhcC----------CCEEEEeCCcchhHh
Confidence 44455678999999999999985 434444444332 148899998887543
No 378
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=72.51 E-value=4.7 Score=43.71 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=13.9
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
.+-+++++++|+|||.+
T Consensus 72 ~~vi~l~G~~G~GKTTt 88 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTT 88 (272)
T ss_pred CeEEEEECCCCCcHHHH
Confidence 34567889999999986
No 379
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=72.22 E-value=3.7 Score=49.97 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=36.9
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~ 477 (842)
..++++.||||||||..+.+|-|-.. .. -+||+=|--|+........++
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~---~~----------S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTW---PG----------SAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhC---CC----------CEEEEeCcchHHHHHHHHHHh
Confidence 46899999999999999999986332 11 278888888987766554433
No 380
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=72.10 E-value=1.6 Score=53.23 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=22.1
Q ss_pred ecceeeeecccccccccccccchhhhhhccccccccee
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il 570 (842)
...+++||||||.|.... ...+...+...|....+|+
T Consensus 117 g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifIL 153 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFIL 153 (725)
T ss_pred CCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEE
Confidence 567899999999987543 2233444444444443333
No 381
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.05 E-value=4.2 Score=48.38 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=25.1
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
.+.+++||||||+|....+ ..+.+.+...|....+|+.+
T Consensus 118 ~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 4578999999999876443 33445555555555555544
No 382
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.00 E-value=5.7 Score=48.01 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=24.5
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
.+++++||||+|+|....|. .+.+.+...|....+|+.+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEE
Confidence 46789999999998865543 3444444444444444433
No 383
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.77 E-value=5.9 Score=47.19 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=25.0
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
...+++||||||+|....+ ..+.+.+...|....+|+.+
T Consensus 118 g~~kViIIDEa~~ls~~a~-naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSF-NALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHHH-HHHHHHHhcCCCCceEEEEE
Confidence 4578999999999876443 34455555555555455444
No 384
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=71.66 E-value=5.1 Score=48.74 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=51.5
Q ss_pred CceEEEEecchhHHHHHHHHHHHH-----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc-----cccc-CCCCCC
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREM-----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-----VSAR-GMDYPD 699 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd-----v~ar-GlDip~ 699 (842)
..++||.|||+.-+.+++..+..+ ++.+..+||+.+...+...+ .....|+|+|. .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchhh
Confidence 458999999999999998887765 46677888887655443332 23578999994 3333 478888
Q ss_pred cceeEE
Q 003178 700 VTSVVQ 705 (842)
Q Consensus 700 V~~VI~ 705 (842)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 888873
No 385
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=71.66 E-value=5.6 Score=43.53 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=21.3
Q ss_pred ceeeeecccccccccccccchhhhhhccccccccee
Q 003178 535 LKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570 (842)
Q Consensus 535 l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il 570 (842)
.++|||||+|.+.... ...+..++...+....+|+
T Consensus 103 ~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl 137 (319)
T PRK00440 103 FKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFIL 137 (319)
T ss_pred ceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEE
Confidence 5689999999986532 2344455555444444444
No 386
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=71.64 E-value=2.8 Score=46.93 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=27.4
Q ss_pred Hhhhcccceeeeeehhhhhhhhhhc-CcceEEeeccCCCcee
Q 003178 391 IKALTAAGYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSI 431 (842)
Q Consensus 391 ~~~L~~~g~~~~t~iQ~~aI~~il~-g~dvii~A~TGSGKTl 431 (842)
+..|.+.|+ +++.+.+.+..+.. +.+++++++||||||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTT 193 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTT 193 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHH
Confidence 444445554 44566666665554 6799999999999998
No 387
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=71.55 E-value=1.9 Score=42.68 Aligned_cols=120 Identities=17% Similarity=0.248 Sum_probs=60.4
Q ss_pred cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceee
Q 003178 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496 (842)
Q Consensus 417 ~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~ 496 (842)
..++|.++.|+|||.+ ++-+.+.+...+.. +.. |++|- +..- +.-.++.+..+..|...
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~g~k--------vgG-f~t~E----------VR~g-GkR~GF~Ivdl~tg~~~ 64 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREKGYK--------VGG-FITPE----------VREG-GKRIGFKIVDLATGEEG 64 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhcCce--------eee-EEeee----------eecC-CeEeeeEEEEccCCceE
Confidence 3578999999999995 55566666554321 122 34441 1111 11125555555433222
Q ss_pred eeccccccCCCceEEecCccchhhhccccC--CceEEEecceeeeeccccccc--ccccccchhhhhhc
Q 003178 497 KVDQRRLESDPCQILVATPGRLLDHIENKS--GLSVRLMGLKMLVLDEADHLL--DLGFRKDVENIVDC 561 (842)
Q Consensus 497 ~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~--~~~~~L~~l~~lVlDEAh~ll--d~gf~~~i~~Il~~ 561 (842)
....... ...-|+-++...+.+..-. .....+..-+++||||.--|- ...|...+..++.+
T Consensus 65 ~la~~~~----~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 65 ILARVGF----SRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred EEEEcCC----CCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 1111111 2334455554444433110 000112235889999999775 34588888777754
No 388
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=71.51 E-value=3.9 Score=49.56 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=24.2
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceee
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~ 571 (842)
.+.+++||||||+|....+ ..+.+++..-|....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEEe
Confidence 3678999999999876543 3344455554444444443
No 389
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=71.49 E-value=2.2 Score=46.03 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=21.6
Q ss_pred eehhhhhhhhhhc--CcceEEeeccCCCceee
Q 003178 403 TRVQEATLSACLE--GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 403 t~iQ~~aI~~il~--g~dvii~A~TGSGKTla 432 (842)
.+.|.+.|..++. +..++|+++||||||..
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~ 96 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT 96 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH
Confidence 4556666655544 34578999999999994
No 390
>PRK05973 replicative DNA helicase; Provisional
Probab=71.30 E-value=2.8 Score=44.51 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=37.4
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
.+||.. +.+--+..|.-++|.|++|+|||+. .+-++......+ -.++|++- -+-..|+.+++..+
T Consensus 50 ~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~l-alqfa~~~a~~G----------e~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTPAE-ELFSQLKPGDLVLLGARPGHGKTLL-GLELAVEAMKSG----------RTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC----------CeEEEEEE-eCCHHHHHHHHHHc
Confidence 345532 2444555677889999999999995 333332222221 13666643 33356777766655
No 391
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=71.20 E-value=7.6 Score=46.91 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=58.5
Q ss_pred hHhhhccc--ceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhH
Q 003178 390 TIKALTAA--GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (842)
Q Consensus 390 l~~~L~~~--g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReL 467 (842)
++.++.-. |...+-.-|..|....+..+--||++|.|+|||++ .+-+++.++.+..... .+..+|++|-|...
T Consensus 365 ~~n~lePp~~g~~ildsSq~~A~qs~ltyelsliqgppGTgkt~v-tlkav~tLL~n~s~~~----~~epIlvvC~Tnha 439 (1025)
T KOG1807|consen 365 IVNALEPPGPGLVILDSSQQFAKQSKLTYELSLIQGPPGTGKTLV-TLKAVDTLLLNSSGYT----EPEPILVVCLTNHA 439 (1025)
T ss_pred hhhhcCCCCCCceeecHHHHHHHHHHhhhhhheeecCCCCCceee-hHHHHHHHHhcccccc----cccceeeeehhhHH
Confidence 44444432 44456667999999999999999999999999998 5667888887653311 12248999999888
Q ss_pred HHHHHHHH
Q 003178 468 ASQIAAEA 475 (842)
Q Consensus 468 A~Qi~~~l 475 (842)
+.|....+
T Consensus 440 vdq~ligi 447 (1025)
T KOG1807|consen 440 VDQYLIGI 447 (1025)
T ss_pred HHHHHHHH
Confidence 88765543
No 392
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.08 E-value=2.1 Score=51.61 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=23.8
Q ss_pred ecceeeeecccccccccccccchhhhhhccccccccee
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il 570 (842)
.+.+++||||||+|....+ ..+.+++...+....+|+
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FIL 153 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLF 153 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEE
Confidence 3578999999998876543 345555555554444444
No 393
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=70.89 E-value=7.6 Score=45.49 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.8
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
|.-+.++||||+|||++
T Consensus 256 g~Vi~LvGpnGvGKTTT 272 (484)
T PRK06995 256 GGVFALMGPTGVGKTTT 272 (484)
T ss_pred CcEEEEECCCCccHHHH
Confidence 56677999999999995
No 394
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=70.67 E-value=1.9 Score=42.77 Aligned_cols=48 Identities=25% Similarity=0.456 Sum_probs=35.3
Q ss_pred ecceeeeecccccccccccc--cchhhhhhcccccccceeecccCcchhh
Q 003178 533 MGLKMLVLDEADHLLDLGFR--KDVENIVDCLPRRRQSLLFSATMPKELV 580 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~--~~i~~Il~~l~~~~q~il~SATl~~~l~ 580 (842)
..+++|||||+=..+..|+. ..+..+++..|...-+|+.+-..|+++.
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~ 143 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELI 143 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHH
Confidence 46899999999988777743 3555667776766677777777777654
No 395
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=70.57 E-value=7.1 Score=39.63 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=48.3
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-----cc-cCCCCCC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----SA-RGMDYPD 699 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-----~a-rGlDip~ 699 (842)
.+.++||.+++...+...+..++.. ++.+..++|+.+..+....+ .+...|+|+|.. +. .-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL----KRGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4568999999999999888887765 45667778877655443322 256789999952 22 2255666
Q ss_pred cceeE
Q 003178 700 VTSVV 704 (842)
Q Consensus 700 V~~VI 704 (842)
+++||
T Consensus 144 l~~lI 148 (203)
T cd00268 144 VKYLV 148 (203)
T ss_pred CCEEE
Confidence 66666
No 396
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=70.56 E-value=2.5 Score=50.61 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=20.1
Q ss_pred ecceeeeecccccccccccccchhhhhhccccc
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR 565 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~ 565 (842)
...+++||||+|+|....+. .+.+.+...|..
T Consensus 118 ~~~kViIIDE~~~Lt~~a~n-aLLKtLEepp~~ 149 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFN-ALLKTLEEPPAH 149 (559)
T ss_pred CCeEEEEEECcccCCHHHHH-HHHHHhcCCCCC
Confidence 46789999999998754433 333344443333
No 397
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=70.43 E-value=4.4 Score=43.87 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=18.3
Q ss_pred hhhhhhhcC---cceEEeeccCCCcee
Q 003178 408 ATLSACLEG---KDAVVKAKTGTGKSI 431 (842)
Q Consensus 408 ~aI~~il~g---~dvii~A~TGSGKTl 431 (842)
..++.+... +++++.+++|+|||.
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKtt 126 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTT 126 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHH
Confidence 345555543 578999999999999
No 398
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=70.39 E-value=2.1 Score=48.62 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=17.1
Q ss_pred hhcCcceEEeeccCCCceee
Q 003178 413 CLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 413 il~g~dvii~A~TGSGKTla 432 (842)
+-.|+.++|.|++|+|||..
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred eCCCCEEEEECCCCCChhHH
Confidence 34688999999999999983
No 399
>PRK13764 ATPase; Provisional
Probab=70.12 E-value=3.5 Score=49.46 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=18.9
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHH
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAV 441 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l 441 (842)
.+++++|+|+||||||.. +-.++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 367899999999999984 33344444
No 400
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=69.49 E-value=6.2 Score=49.00 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=28.2
Q ss_pred cccccccCCCchhHhhhccc---ceeeeeehhhhhhhhhhcCcceEEeeccCCCcee
Q 003178 378 QKRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~---g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTl 431 (842)
..+|++++-....++.+.++ .+..+.-++... +..++.+++.||+|+|||+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~ 227 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTL 227 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHH
Confidence 35677776555555555432 111111111111 1235789999999999998
No 401
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=69.38 E-value=2.5 Score=50.76 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=28.2
Q ss_pred hcccceeeeeehhhhhhhhhhc--CcceEEeeccCCCceeeehhHHHHHH
Q 003178 394 LTAAGYIQMTRVQEATLSACLE--GKDAVVKAKTGTGKSIAFLLPAIEAV 441 (842)
Q Consensus 394 L~~~g~~~~t~iQ~~aI~~il~--g~dvii~A~TGSGKTlafllPil~~l 441 (842)
|..+|+ .+-|.+.+..++. +.-++++||||||||.+ +..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 344554 4566667766554 34578999999999995 33344433
No 402
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=69.23 E-value=2.3 Score=50.07 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=25.2
Q ss_pred hcccceeeeeehhhhhhhhhhcCc--ceEEeeccCCCceee
Q 003178 394 LTAAGYIQMTRVQEATLSACLEGK--DAVVKAKTGTGKSIA 432 (842)
Q Consensus 394 L~~~g~~~~t~iQ~~aI~~il~g~--dvii~A~TGSGKTla 432 (842)
|..+|+ .+-|.+.+..++... -++++||||||||..
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTt 258 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTT 258 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 344453 566777777666533 367999999999995
No 403
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.14 E-value=6.7 Score=47.32 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.1
Q ss_pred ecceeeeeccccccccc
Q 003178 533 MGLKMLVLDEADHLLDL 549 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~ 549 (842)
...++|||||+|.|...
T Consensus 119 ~~~kVvIIDEa~~L~~~ 135 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTA 135 (585)
T ss_pred CCeEEEEEeChHhCCHH
Confidence 46789999999998754
No 404
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=68.99 E-value=3.7 Score=45.29 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=16.3
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..+.+++++++||||||.
T Consensus 142 ~~~~~ili~G~tGsGKTT 159 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTT 159 (308)
T ss_pred hCCCEEEEECCCCCCHHH
Confidence 357899999999999999
No 405
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.56 E-value=1.8 Score=52.84 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=37.9
Q ss_pred ceeeeecccccccccccccchhhhhhcccccccceeecccCcch
Q 003178 535 LKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (842)
Q Consensus 535 l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~ 578 (842)
.=++|||..|.+.+......+..++++.|.+.+.++.|-+-|.-
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l 173 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQL 173 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCC
Confidence 35899999999998877788889999999999999998886653
No 406
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=68.39 E-value=3.9 Score=42.03 Aligned_cols=14 Identities=43% Similarity=0.665 Sum_probs=12.7
Q ss_pred eEEeeccCCCceee
Q 003178 419 AVVKAKTGTGKSIA 432 (842)
Q Consensus 419 vii~A~TGSGKTla 432 (842)
++|++|||||||..
T Consensus 4 ilI~GptGSGKTTl 17 (198)
T cd01131 4 VLVTGPTGSGKSTT 17 (198)
T ss_pred EEEECCCCCCHHHH
Confidence 67999999999995
No 407
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=68.25 E-value=3.2 Score=44.20 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=13.2
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
=||++++|||||+..
T Consensus 129 LviiVGaTGSGKSTt 143 (375)
T COG5008 129 LVIIVGATGSGKSTT 143 (375)
T ss_pred eEEEECCCCCCchhh
Confidence 468999999999996
No 408
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=68.21 E-value=2.6 Score=43.14 Aligned_cols=47 Identities=23% Similarity=0.429 Sum_probs=32.5
Q ss_pred ecceeeeecccccccccccc--cchhhhhhcccccccceeecccCcchh
Q 003178 533 MGLKMLVLDEADHLLDLGFR--KDVENIVDCLPRRRQSLLFSATMPKEL 579 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~--~~i~~Il~~l~~~~q~il~SATl~~~l 579 (842)
..+++|||||+=..++.|+. ..+..++...|...-+|+.--..|+++
T Consensus 114 ~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~L 162 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPREL 162 (191)
T ss_pred CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 36899999999998888753 345555666565555666555566654
No 409
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=68.05 E-value=7 Score=45.09 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=12.9
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
-+.++|++|+|||++
T Consensus 102 vi~lvG~~GvGKTTt 116 (429)
T TIGR01425 102 VIMFVGLQGSGKTTT 116 (429)
T ss_pred EEEEECCCCCCHHHH
Confidence 467999999999985
No 410
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=68.02 E-value=6.8 Score=51.21 Aligned_cols=57 Identities=26% Similarity=0.356 Sum_probs=42.1
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.++++|.|..|||||.+..--++..+.. .. .+-.+|+|+-|+..|..+.+++...+.
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~-~~-------~~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLN-GV-------PPSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHc-CC-------CCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 5689999999999999744334433332 21 122699999999999999998887775
No 411
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=67.95 E-value=4.8 Score=47.46 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=15.5
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.|+.++++|+||+|||..
T Consensus 349 ~G~vIaLVGPtGvGKTTt 366 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTT 366 (559)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999985
No 412
>PRK14701 reverse gyrase; Provisional
Probab=67.61 E-value=5.2 Score=53.54 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=52.9
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH------hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM------KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 690 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~------~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv 690 (842)
.+.++||.+||+.-+.+++..|+.+ ++.+..+||+++..++..+++.+.+|..+|||+|.-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 3458999999999999999998874 345678999999999999999999999999999974
No 413
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=67.47 E-value=6 Score=51.47 Aligned_cols=75 Identities=12% Similarity=0.145 Sum_probs=56.7
Q ss_pred CceEEEEecchhHHHHHHHHHHHHh----hh---HHHHhhcCcchhhhhhhHHHhhcceEEEEecccccc-CCC-CC-Cc
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREMK----MN---VREMYSRKPQLYRDRISEEFRASKRLILVTSDVSAR-GMD-YP-DV 700 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~~----~~---v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ar-GlD-ip-~V 700 (842)
+.++||.+||+.-+.+++..++... +. +..+||+++..++...++.+.+|..+|||+|.-.-. .++ +. .+
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~ 200 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKF 200 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCC
Confidence 5689999999999999999888763 22 335899999999988899999999999999974221 111 11 56
Q ss_pred ceeEE
Q 003178 701 TSVVQ 705 (842)
Q Consensus 701 ~~VI~ 705 (842)
++||.
T Consensus 201 ~~iVv 205 (1171)
T TIGR01054 201 DFIFV 205 (1171)
T ss_pred CEEEE
Confidence 77764
No 414
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=66.88 E-value=6.5 Score=45.83 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=52.3
Q ss_pred CceEEEEecchhHHHHHHHHHHHH-----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc-----ccc-cCCCCCC
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREM-----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-----VSA-RGMDYPD 699 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd-----v~a-rGlDip~ 699 (842)
..++||.+||+.-+.+++..++.. ++.+..++|+.+...+...+. ....|+|+|. .+. ..+++.+
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~ 147 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDA 147 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHH
Confidence 347999999999999999888765 356777888887655443332 5678999994 333 4578889
Q ss_pred cceeEE
Q 003178 700 VTSVVQ 705 (842)
Q Consensus 700 V~~VI~ 705 (842)
+++||.
T Consensus 148 l~~lVi 153 (460)
T PRK11776 148 LNTLVL 153 (460)
T ss_pred CCEEEE
Confidence 999884
No 415
>PRK09183 transposase/IS protein; Provisional
Probab=66.34 E-value=5.9 Score=42.60 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=17.4
Q ss_pred hhcCcceEEeeccCCCceee
Q 003178 413 CLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 413 il~g~dvii~A~TGSGKTla 432 (842)
+..+.++++.||+|+|||..
T Consensus 99 i~~~~~v~l~Gp~GtGKThL 118 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHL 118 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHH
Confidence 45688999999999999984
No 416
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=66.03 E-value=6.6 Score=53.77 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=43.9
Q ss_pred eeeeehhhhhhhhhhcC--cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHH
Q 003178 400 IQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~g--~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~ 472 (842)
..+++.|.+|+..++.+ +-++|++..|+|||.. +..++..+...-. ..+..++.++||-..|.++.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~-l~~~~~~i~~~~~------~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTM-LESRYKPVLQAFE------SEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHh-HHHHHHHHHHHHH------hcCCeEEEEeChHHHHHHHH
Confidence 36899999999999876 4567899999999985 2122122211100 01235888999977776654
No 417
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=65.76 E-value=6.3 Score=49.23 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.6
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+..+++.+|+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45688999999999983
No 418
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=65.38 E-value=3.6 Score=48.54 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=14.5
Q ss_pred cceEEeeccCCCceeee
Q 003178 417 KDAVVKAKTGTGKSIAF 433 (842)
Q Consensus 417 ~dvii~A~TGSGKTlaf 433 (842)
+.++++||.|+|||.++
T Consensus 44 ~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSA 60 (507)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36889999999999953
No 419
>PRK10867 signal recognition particle protein; Provisional
Probab=65.32 E-value=8.5 Score=44.55 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=13.2
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
-+++++++|+|||++
T Consensus 102 vI~~vG~~GsGKTTt 116 (433)
T PRK10867 102 VIMMVGLQGAGKTTT 116 (433)
T ss_pred EEEEECCCCCcHHHH
Confidence 467999999999986
No 420
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=65.14 E-value=10 Score=38.26 Aligned_cols=64 Identities=25% Similarity=0.243 Sum_probs=34.8
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.|.-+++.|++|+|||.. ++.++.++.....-.......+.++|++..--. ..++.+++..+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~-~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTL-ALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHH-HHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 567789999999999995 555555554321110000113346778766444 4577777776654
No 421
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=65.11 E-value=7.2 Score=45.10 Aligned_cols=15 Identities=20% Similarity=0.353 Sum_probs=13.3
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
-+++++++|+|||++
T Consensus 101 vi~~vG~~GsGKTTt 115 (428)
T TIGR00959 101 VILMVGLQGSGKTTT 115 (428)
T ss_pred EEEEECCCCCcHHHH
Confidence 467999999999996
No 422
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=64.81 E-value=4.4 Score=49.29 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=33.2
Q ss_pred hhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHH
Q 003178 412 ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (842)
Q Consensus 412 ~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~ 472 (842)
.-...+++++.|.||||||.+ +-.++..+...+. ++||.=|+-+.+...+
T Consensus 181 ~~~E~~H~li~GttGSGKS~~-i~~LL~~ir~RGd----------rAIIyD~~GeFv~~FY 230 (732)
T PRK13700 181 RDSEIQNFCLHGTVGAGKSEV-IRRLANYARQRGD----------MVVIYDRSGEFVKSYY 230 (732)
T ss_pred cchhhcceEEeCCCCCCHHHH-HHHHHHHHHHcCC----------eEEEEeCCCchHHHhc
Confidence 344578999999999999995 4455555544321 5677777666655433
No 423
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=64.67 E-value=7.4 Score=49.45 Aligned_cols=75 Identities=12% Similarity=0.226 Sum_probs=65.2
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEec-cccccCCCCCCcceeE
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTS-DVSARGMDYPDVTSVV 704 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaT-dv~arGlDip~V~~VI 704 (842)
.++++.|.+||.--|++.++.|++. .++|..+..=.+.+++..+++..++|+++|+|.| .++..+|-+.++-+||
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 4679999999988888888888764 5667778888889999999999999999999999 5678889999999988
No 424
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=63.98 E-value=7.5 Score=46.91 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=36.4
Q ss_pred EEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhhcc
Q 003178 488 LTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562 (842)
Q Consensus 488 ~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l 562 (842)
-...||..-..+.+-.+ -.-|=+-||++++-|..... .--+++|||+|.|...-.++--..++..|
T Consensus 380 R~sLGGvrDEAEIRGHR---RTYIGamPGrIiQ~mkka~~------~NPv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 380 RISLGGVRDEAEIRGHR---RTYIGAMPGKIIQGMKKAGV------KNPVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred EEecCccccHHHhcccc---ccccccCChHHHHHHHHhCC------cCCeEEeechhhccCCCCCChHHHHHhhc
Confidence 34456655433332222 12344569999988865421 22469999999987643333333444433
No 425
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=63.95 E-value=4.1 Score=45.09 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=25.6
Q ss_pred eeeeeehhhhhhhhh-hcCcceEEeeccCCCceee
Q 003178 399 YIQMTRVQEATLSAC-LEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 399 ~~~~t~iQ~~aI~~i-l~g~dvii~A~TGSGKTla 432 (842)
+..+++.|.+-+-.+ ..+++++++++||||||..
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~ 159 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL 159 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH
Confidence 344666776665544 4578999999999999994
No 426
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=63.90 E-value=4.6 Score=47.90 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=26.5
Q ss_pred Eecceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 532 L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
....+++||||||+|.... ...+.+++...|+...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 3467899999999987543 334455566556666555554
No 427
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.45 E-value=8.9 Score=44.98 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=12.8
Q ss_pred eEEeeccCCCceee
Q 003178 419 AVVKAKTGTGKSIA 432 (842)
Q Consensus 419 vii~A~TGSGKTla 432 (842)
++++||.|+|||..
T Consensus 39 ~Lf~GPpGtGKTTl 52 (472)
T PRK14962 39 YIFAGPRGTGKTTV 52 (472)
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999985
No 428
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=63.34 E-value=4.1 Score=44.13 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=16.8
Q ss_pred hhcCcceEEeeccCCCcee
Q 003178 413 CLEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 413 il~g~dvii~A~TGSGKTl 431 (842)
+.+++.++++||+|+|||.
T Consensus 30 ~~~~~pvLl~G~~GtGKT~ 48 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTS 48 (272)
T ss_dssp HHCTEEEEEESSTTSSHHH
T ss_pred HHcCCcEEEECCCCCchhH
Confidence 3457899999999999999
No 429
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=63.02 E-value=3.7 Score=44.17 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=21.4
Q ss_pred hhhhhhhhcCcceEEeeccCCCceee
Q 003178 407 EATLSACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 407 ~~aI~~il~g~dvii~A~TGSGKTla 432 (842)
++++..+..|..+++.|++|+|||.+
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~l 37 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTL 37 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHH
Confidence 34555667799999999999999994
No 430
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=62.92 E-value=13 Score=46.17 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=15.1
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
..++++.||+|+|||..
T Consensus 207 ~~n~LLvGppGvGKT~l 223 (758)
T PRK11034 207 KNNPLLVGESGVGKTAI 223 (758)
T ss_pred CCCeEEECCCCCCHHHH
Confidence 45889999999999994
No 431
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=62.80 E-value=4.5 Score=46.58 Aligned_cols=71 Identities=17% Similarity=0.145 Sum_probs=48.2
Q ss_pred eeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
+-.+-..|.++.-..-.|.- .|.+-.|||||...++-+ .++.... +.-+++|.+-|+.|+.++...+.++
T Consensus 160 IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Ka-a~lh~kn--------Pd~~I~~Tfftk~L~s~~r~lv~~F 229 (660)
T COG3972 160 IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKA-AELHSKN--------PDSRIAFTFFTKILASTMRTLVPEF 229 (660)
T ss_pred HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHH-HHHhcCC--------CCceEEEEeehHHHHHHHHHHHHHH
Confidence 34455667776544455655 678899999999533322 2222222 2337999999999999999988888
Q ss_pred h
Q 003178 479 L 479 (842)
Q Consensus 479 ~ 479 (842)
+
T Consensus 230 ~ 230 (660)
T COG3972 230 F 230 (660)
T ss_pred H
Confidence 7
No 432
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=62.71 E-value=11 Score=43.59 Aligned_cols=72 Identities=10% Similarity=0.176 Sum_probs=52.6
Q ss_pred CceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc------cccCCCCCCc
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV------SARGMDYPDV 700 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv------~arGlDip~V 700 (842)
..++||.+||+.-+..+++.+..+ ++.+..++|+.....+..++ .+...|||+|.- ....+++.++
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAV 148 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccC
Confidence 358999999999999888877654 56778888888766554433 346789999961 2245778888
Q ss_pred ceeEEe
Q 003178 701 TSVVQV 706 (842)
Q Consensus 701 ~~VI~y 706 (842)
++||.-
T Consensus 149 ~~lViD 154 (434)
T PRK11192 149 ETLILD 154 (434)
T ss_pred CEEEEE
Confidence 888843
No 433
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=62.55 E-value=4 Score=48.44 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=25.1
Q ss_pred Eecceeeeecccccccccccccchhhhhhccccccccee
Q 003178 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570 (842)
Q Consensus 532 L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il 570 (842)
+++-+++|+||+---+|..-...+.+.+..+.+++-+|+
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIi 524 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVV 524 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 456788999999887776666666555555443433333
No 434
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=62.20 E-value=3.8 Score=51.52 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=37.6
Q ss_pred ccccccccccccCCCchhHhhhcccceeee-eehhhhhhhhhhcCcceEEeeccCCCceee
Q 003178 373 EPILSQKRFDECGISPLTIKALTAAGYIQM-TRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 373 ~~~~~~~~F~~l~l~~~l~~~L~~~g~~~~-t~iQ~~aI~~il~g~dvii~A~TGSGKTla 432 (842)
........|++.|....++..|+++-...+ +|-+-.-+ .|.--+-|+.++|.|+|||+.
T Consensus 256 ~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~ 315 (1080)
T KOG0732|consen 256 LSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLM 315 (1080)
T ss_pred hhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHH
Confidence 344445679999988888888887643322 22221111 112246799999999999993
No 435
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.90 E-value=9.4 Score=45.99 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=24.4
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
...+++||||+|+|....+ ..+.+++...+....+|+.+
T Consensus 118 ~~~KVvIIdev~~Lt~~a~-naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAF-NALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHHH-HHHHHHHHcCCCCeEEEEEe
Confidence 4688999999998875433 34455555544444444433
No 436
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=61.86 E-value=5.7 Score=44.57 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=15.0
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+..++|+||||||||..
T Consensus 122 ~g~ili~G~tGSGKTT~ 138 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT 138 (343)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 56789999999999994
No 437
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=61.59 E-value=9 Score=40.71 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=45.3
Q ss_pred eEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCC-CCCCCcceeEEecc
Q 003178 682 RLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTG-REGKEGEGVLLLAP 737 (842)
Q Consensus 682 ~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaG-R~G~~G~~i~ll~~ 737 (842)
..|+|+=+.++||+.++++.+.....-+...+++.||.==-| |.|-.+.|=+++++
T Consensus 136 ~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~dl~Ri~~~~ 192 (239)
T PF10593_consen 136 NVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYEDLCRIYMPE 192 (239)
T ss_pred eEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCcccccceEEecCH
Confidence 789999999999999999999999999998888888753344 55556677776654
No 438
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=61.43 E-value=8.8 Score=44.81 Aligned_cols=52 Identities=31% Similarity=0.347 Sum_probs=31.9
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
.|.-+++.+++|+|||.. ++-++..+.... .++||+.. -+-..|+..++..+
T Consensus 93 ~GsvilI~G~pGsGKTTL-~lq~a~~~a~~g----------~kvlYvs~-EEs~~qi~~ra~rl 144 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTL-LLQVACQLAKNQ----------MKVLYVSG-EESLQQIKMRAIRL 144 (454)
T ss_pred CCeEEEEEcCCCCCHHHH-HHHHHHHHHhcC----------CcEEEEEC-cCCHHHHHHHHHHc
Confidence 356788999999999994 333333332211 14788775 35556776655554
No 439
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=61.01 E-value=4.2 Score=40.98 Aligned_cols=48 Identities=21% Similarity=0.418 Sum_probs=34.3
Q ss_pred ecceeeeecccccccccccc--cchhhhhhcccccccceeecccCcchhh
Q 003178 533 MGLKMLVLDEADHLLDLGFR--KDVENIVDCLPRRRQSLLFSATMPKELV 580 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~--~~i~~Il~~l~~~~q~il~SATl~~~l~ 580 (842)
..+++|||||+=..++.|+. ..+..++...|...-+|+..-..|+.+.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~ 145 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLL 145 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHH
Confidence 36899999999988887743 3455666666666667776666776653
No 440
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=60.81 E-value=9 Score=46.58 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=34.6
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchh--HHHHHHHHHHHh
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE--LASQIAAEAIAL 478 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTRe--LA~Qi~~~l~~l 478 (842)
..+++|.|+||+|||..+.+ ++......+ ..++++=|--. |...+...++..
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~-l~~q~i~~g----------~~viv~DpKgD~~l~~~~~~~~~~~ 229 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAEL-LITQDIRRG----------DVVIVIDPKGDADLKRRMRAEAKRA 229 (634)
T ss_pred CCcEEEECCCCCCHHHHHHH-HHHHHHHcC----------CeEEEEeCCCchHHHHHHHHHHHHh
Confidence 57899999999999987543 444443322 14677777654 666666666555
No 441
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=60.71 E-value=7 Score=40.80 Aligned_cols=42 Identities=29% Similarity=0.391 Sum_probs=28.2
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhH
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReL 467 (842)
++++.|.|.||||||.. +--+++.+.+. .+..+||+=|.=|=
T Consensus 23 ~~H~~I~G~TGsGKS~~-~~~ll~~l~~~---------~~~~~ii~D~~GEY 64 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNT-VKVLLEELLKK---------KGAKVIIFDPHGEY 64 (229)
T ss_pred cceEEEECCCCCCHHHH-HHHHHHHHHhc---------CCCCEEEEcCCCcc
Confidence 57899999999999996 44455666531 11247777776443
No 442
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=60.69 E-value=5.1 Score=45.57 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=19.6
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHHH
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l~ 442 (842)
|...|||+.+|||||||+. .--|.+++
T Consensus 224 LeKSNvLllGPtGsGKTll--aqTLAr~l 250 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLL--AQTLARVL 250 (564)
T ss_pred eecccEEEECCCCCchhHH--HHHHHHHh
Confidence 4567899999999999993 33344444
No 443
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=60.43 E-value=18 Score=40.14 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.3
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+.-+.+++|+|+|||..
T Consensus 114 ~~vi~lvGpnGsGKTTt 130 (318)
T PRK10416 114 PFVILVVGVNGVGKTTT 130 (318)
T ss_pred CeEEEEECCCCCcHHHH
Confidence 45677999999999985
No 444
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=60.41 E-value=9 Score=43.03 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=31.3
Q ss_pred ceeeeecccccccccc--cccchhhhhhcccccccceeecccCcchhhc
Q 003178 535 LKMLVLDEADHLLDLG--FRKDVENIVDCLPRRRQSLLFSATMPKELVL 581 (842)
Q Consensus 535 l~~lVlDEAh~lld~g--f~~~i~~Il~~l~~~~q~il~SATl~~~l~~ 581 (842)
--+||+|-||.+-|++ ....+..+-..++...-.+++|+++.+....
T Consensus 116 ~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~ 164 (438)
T KOG2543|consen 116 KVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYL 164 (438)
T ss_pred eEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhh
Confidence 4579999999998876 2223333444455555568889998876543
No 445
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=60.40 E-value=1.7 Score=42.57 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=28.0
Q ss_pred cceeeeecccccccccccccchhhhhhcccccccceeeccc
Q 003178 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SAT 574 (842)
..+++|+||...-+|......+..++..+....++++++..
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh 138 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTH 138 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 45789999999988877677777777665443344554443
No 446
>PRK04328 hypothetical protein; Provisional
Probab=60.32 E-value=8 Score=41.25 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=30.8
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
.|..++|.+++|+|||...+--+.+.+.+ +. .++|++ +.+-..++.+.+..+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~-ge----------~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GE----------PGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CC----------cEEEEE-eeCCHHHHHHHHHHc
Confidence 36778899999999988422222222222 11 366665 555556666666555
No 447
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=60.31 E-value=11 Score=47.08 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=56.3
Q ss_pred ccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHH
Q 003178 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (842)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l 475 (842)
+..+..+||-|-++|..-+.-.++.+.+|+|+|||-. ..-++..++... +..+++|++......+|..+.+
T Consensus 733 ~~n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~-avqil~~lyhn~--------p~qrTlivthsnqaln~lfeKi 803 (1320)
T KOG1806|consen 733 KKNQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDV-AVQILSVLYHNS--------PNQRTLIVTHSNQALNQLFEKI 803 (1320)
T ss_pred ccchhccCHHHHHHHHhcCCCCceeeecCCCCCCcch-hhhhhhhhhhcC--------CCcceEEEEecccchhHHHHHH
Confidence 4456678899999998877788999999999999987 444565555543 2347899999888888877766
Q ss_pred HHh
Q 003178 476 IAL 478 (842)
Q Consensus 476 ~~l 478 (842)
.+.
T Consensus 804 ~~~ 806 (1320)
T KOG1806|consen 804 MAL 806 (1320)
T ss_pred Hhc
Confidence 554
No 448
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=60.04 E-value=9.1 Score=40.96 Aligned_cols=52 Identities=23% Similarity=0.285 Sum_probs=33.5
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
.|+.++|.++.|||||+- .+-.+....+.. -.++++ -+.+...++.+.+..+
T Consensus 22 ~g~~~lI~G~pGsGKT~f-~~qfl~~~~~~g----------e~vlyv-s~~e~~~~l~~~~~~~ 73 (260)
T COG0467 22 RGSVVLITGPPGTGKTIF-ALQFLYEGAREG----------EPVLYV-STEESPEELLENARSF 73 (260)
T ss_pred CCcEEEEEcCCCCcHHHH-HHHHHHHHHhcC----------CcEEEE-EecCCHHHHHHHHHHc
Confidence 478899999999999984 333333333221 135554 4567777777777764
No 449
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=59.90 E-value=4.2 Score=43.65 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=17.6
Q ss_pred hhhcCcceEEeeccCCCceee
Q 003178 412 ACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 412 ~il~g~dvii~A~TGSGKTla 432 (842)
-+..|.-+++.|++|+|||..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l 46 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTF 46 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHH
Confidence 445678889999999999984
No 450
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=59.82 E-value=5.1 Score=38.85 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=22.6
Q ss_pred ecceeeeecccccccccccccchhhhhhcc
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCL 562 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l 562 (842)
.+-+++|+||.-.-+|......+..++..+
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 356789999999888877666666666655
No 451
>PHA02535 P terminase ATPase subunit; Provisional
Probab=59.47 E-value=22 Score=42.43 Aligned_cols=86 Identities=19% Similarity=0.137 Sum_probs=59.7
Q ss_pred CCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccch
Q 003178 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (842)
Q Consensus 386 l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTR 465 (842)
+++...+.|...-...+.++|..-+..-+..+.-++.-.==.|||.+|..-++...+..+. ..++|+|++
T Consensus 123 ~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~~G~----------nqiflSas~ 192 (581)
T PHA02535 123 ISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALLTGR----------NQIFLSASK 192 (581)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHhcCC----------ceEEECCCH
Confidence 5666777777666678999999877553233444444444569999988777766655321 368999999
Q ss_pred hHHHHHHHHHHHhhhc
Q 003178 466 ELASQIAAEAIALLKN 481 (842)
Q Consensus 466 eLA~Qi~~~l~~l~~~ 481 (842)
+.|.+..+.+..+...
T Consensus 193 ~QA~~f~~yi~~~a~~ 208 (581)
T PHA02535 193 AQAHVFKQYIIAFARE 208 (581)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999877777776543
No 452
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.22 E-value=17 Score=40.93 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=13.7
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
+.++++||.|+|||..
T Consensus 40 ~~~L~~G~~G~GKt~~ 55 (367)
T PRK14970 40 QALLFCGPRGVGKTTC 55 (367)
T ss_pred eEEEEECCCCCCHHHH
Confidence 3678999999999984
No 453
>PRK04841 transcriptional regulator MalT; Provisional
Probab=59.17 E-value=13 Score=47.23 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=33.1
Q ss_pred eeeeecccccccccccccchhhhhhcccccccceeecccCcc
Q 003178 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (842)
Q Consensus 536 ~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~ 577 (842)
-+||||++|.+.+......+..++...+....+|+.|-+.|+
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 479999999986655566778888888888888888877543
No 454
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=58.82 E-value=13 Score=44.64 Aligned_cols=71 Identities=23% Similarity=0.252 Sum_probs=50.2
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeee---ccccccCCCceEEecCccchhhhccccCCceEEEe
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV---DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~---~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
++||.|+|+..|.++++.+... ++.+..++|+..... ....+..+..+||||| +.+... +++.
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~arG----IDip 324 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAARG----LHID 324 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhhcC----CCcc
Confidence 5899999999999998887654 567888888755432 2344556678999999 344443 4556
Q ss_pred cceeeeec
Q 003178 534 GLKMLVLD 541 (842)
Q Consensus 534 ~l~~lVlD 541 (842)
++++||.-
T Consensus 325 ~V~~VIny 332 (572)
T PRK04537 325 GVKYVYNY 332 (572)
T ss_pred CCCEEEEc
Confidence 77777643
No 455
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=58.65 E-value=20 Score=41.56 Aligned_cols=73 Identities=10% Similarity=0.131 Sum_probs=56.7
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-------cccCCCCC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-------SARGMDYP 698 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-------~arGlDip 698 (842)
+-.++||.|||+.-+.+++...+++ .+.|+..-|+++-..+..++. ...+|+|||.- -+.++|+.
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATPGRlIDHlrNs~sf~ld 326 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SRPDIVIATPGRLIDHLRNSPSFNLD 326 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hCCCEEEecchhHHHHhccCCCcccc
Confidence 4458999999999999998888776 577888899999888777765 35789999972 24677777
Q ss_pred CcceeEEe
Q 003178 699 DVTSVVQV 706 (842)
Q Consensus 699 ~V~~VI~y 706 (842)
++.+.|.-
T Consensus 327 siEVLvlD 334 (691)
T KOG0338|consen 327 SIEVLVLD 334 (691)
T ss_pred ceeEEEec
Confidence 77776643
No 456
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=58.48 E-value=11 Score=42.62 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=27.5
Q ss_pred cceeeeecccccccccccccchhhhhhcc-cccccceeecccCcchhh
Q 003178 534 GLKMLVLDEADHLLDLGFRKDVENIVDCL-PRRRQSLLFSATMPKELV 580 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~gf~~~i~~Il~~l-~~~~q~il~SATl~~~l~ 580 (842)
...+|.+||.|. .|.+=.-.+..++..+ ....-+|..|.+.|..+.
T Consensus 127 ~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly 173 (362)
T PF03969_consen 127 ESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDLY 173 (362)
T ss_pred cCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHc
Confidence 456899999984 3333222333444433 345567777888887753
No 457
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=58.47 E-value=60 Score=39.26 Aligned_cols=62 Identities=23% Similarity=0.198 Sum_probs=38.4
Q ss_pred eehhhhhhhhhhc-------CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHH
Q 003178 403 TRVQEATLSACLE-------GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (842)
Q Consensus 403 t~iQ~~aI~~il~-------g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~ 474 (842)
|--|..|+-.++. .--+-+.|.-|-||+.|.-+.+...+...-. -+.|.+|.-+=..-+++.
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~Gys----------nIyvtSPspeNlkTlFeF 323 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGYS----------NIYVTSPSPENLKTLFEF 323 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCcc----------eEEEcCCChHHHHHHHHH
Confidence 3456666654432 2345588999999999977776655543321 267888886654444443
No 458
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=58.39 E-value=5.6 Score=47.73 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=13.8
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
+..++.||.|+|||..
T Consensus 39 hA~Lf~GP~GvGKTTl 54 (605)
T PRK05896 39 HAYIFSGPRGIGKTSI 54 (605)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3578999999999995
No 459
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=58.22 E-value=4.6 Score=46.21 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=26.1
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeecccCcc
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~ 577 (842)
.+.+++||||||+|.... ...+.+++..-++.. ++++.||-+.
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~ 158 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPE 158 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChH
Confidence 467899999999997543 244555555544443 4444454443
No 460
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=58.19 E-value=3.9 Score=40.77 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=29.5
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeeccc
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SAT 574 (842)
.+-+++++||--.-+|......+..++..+... .+++++..
T Consensus 113 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tii~~sh 153 (171)
T cd03228 113 RDPPILILDEATSALDPETEALILEALRALAKG-KTVIVIAH 153 (171)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCC-CEEEEEec
Confidence 456899999999888887777777777766543 45555433
No 461
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=58.09 E-value=9.2 Score=43.18 Aligned_cols=38 Identities=24% Similarity=0.496 Sum_probs=28.7
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccc
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PT 464 (842)
.|+.++|.+..|+|||+ |.+-++..+..... ++||+++
T Consensus 9 ~G~TLLIKG~PGTGKTt-faLelL~~l~~~~~-----------v~YISTR 46 (484)
T PF07088_consen 9 PGQTLLIKGEPGTGKTT-FALELLNSLKDHGN-----------VMYISTR 46 (484)
T ss_pred CCcEEEEecCCCCCcee-eehhhHHHHhccCC-----------eEEEEec
Confidence 47889999999999999 46777766654431 5777775
No 462
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=57.84 E-value=17 Score=40.52 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=13.2
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
..++.||.|+|||.+
T Consensus 38 ~~Ll~G~~G~GKt~~ 52 (355)
T TIGR02397 38 AYLFSGPRGTGKTSI 52 (355)
T ss_pred EEEEECCCCCCHHHH
Confidence 468999999999984
No 463
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.68 E-value=12 Score=45.45 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=13.9
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
..+|+.||.|+|||.+
T Consensus 39 ~a~Lf~Gp~G~GKttl 54 (620)
T PRK14948 39 PAYLFTGPRGTGKTSS 54 (620)
T ss_pred ceEEEECCCCCChHHH
Confidence 3568999999999995
No 464
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=57.65 E-value=16 Score=40.77 Aligned_cols=56 Identities=34% Similarity=0.574 Sum_probs=36.4
Q ss_pred cCCCCccccchHHHHHHHHHHhhccccCCCcccccccccccccccccccccCCCchhHhhhcccceeeeeehhhhhhhhh
Q 003178 334 PLKSLEDEHDFEEQVELIRKEISKNKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSAC 413 (842)
Q Consensus 334 p~~~~e~e~~~e~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~i 413 (842)
|...+++-.-.++|++++++.+ +.|+..+..|.++|+.|
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~V----------------ELPL~~PElF~~~GI~P------------------------- 184 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVV----------------ELPLKNPELFEELGIDP------------------------- 184 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHh----------------cccccCHHHHHHcCCCC-------------------------
Confidence 4445555566677777776543 23444445566555544
Q ss_pred hcCcceEEeeccCCCceee
Q 003178 414 LEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTla 432 (842)
-+-|++.+|.|+|||+.
T Consensus 185 --PKGVLLYGPPGTGKTLL 201 (406)
T COG1222 185 --PKGVLLYGPPGTGKTLL 201 (406)
T ss_pred --CCceEeeCCCCCcHHHH
Confidence 24689999999999993
No 465
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=57.48 E-value=6.9 Score=43.59 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=23.7
Q ss_pred eeehhhhhhhhhhc--C---cceEEeeccCCCceee
Q 003178 402 MTRVQEATLSACLE--G---KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 402 ~t~iQ~~aI~~il~--g---~dvii~A~TGSGKTla 432 (842)
++|+|..++..+.. + .-.++.||.|.|||..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~l 37 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAF 37 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHH
Confidence 36788887777664 2 3578999999999985
No 466
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.33 E-value=8.5 Score=46.64 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=22.9
Q ss_pred Eecceeeeecccccccccccccchhhhhhcccccccceee
Q 003178 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571 (842)
Q Consensus 532 L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~ 571 (842)
....+++||||+|.|....+ ..+.+.+...+...-+|+.
T Consensus 125 ~~~~KVvIIdEad~Lt~~a~-naLLK~LEePp~~tv~IL~ 163 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAAF-NAFLKTLEEPPPHAIFIFA 163 (620)
T ss_pred cCCCEEEEEeChhhcCHHHH-HHHHHHHhCCCCCeEEEEE
Confidence 45678999999999876432 2344444444433333333
No 467
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=56.85 E-value=8 Score=40.16 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=14.9
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
|.-+.|.|++|+|||..
T Consensus 19 g~v~~I~G~~GsGKT~l 35 (226)
T cd01393 19 GRITEIFGEFGSGKTQL 35 (226)
T ss_pred CcEEEEeCCCCCChhHH
Confidence 56778999999999995
No 468
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=56.60 E-value=1.4 Score=52.78 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=26.7
Q ss_pred Eecceeeeecccccccccccccchhhhhhccccccccee
Q 003178 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570 (842)
Q Consensus 532 L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il 570 (842)
+++-.++|+|||-.-+|..-+..+...+..+.+.+.+++
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 455678999999998887766666666665554543333
No 469
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=56.42 E-value=8.2 Score=42.77 Aligned_cols=58 Identities=10% Similarity=0.131 Sum_probs=33.3
Q ss_pred eEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 509 QILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 509 ~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
.|-|-..-.+...+... ......+++|||+||.|.... ...+.+++...| +..+|+.+
T Consensus 103 ~I~id~ir~i~~~l~~~----p~~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~ 160 (314)
T PRK07399 103 QIRLEQIREIKRFLSRP----PLEAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIA 160 (314)
T ss_pred cCcHHHHHHHHHHHccC----cccCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEE
Confidence 34444444454545433 223468999999999987643 345556666655 44344433
No 470
>PRK10865 protein disaggregation chaperone; Provisional
Probab=56.23 E-value=30 Score=43.74 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=14.4
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
.++|+.|++|+|||..
T Consensus 200 ~n~lL~G~pGvGKT~l 215 (857)
T PRK10865 200 NNPVLIGEPGVGKTAI 215 (857)
T ss_pred CceEEECCCCCCHHHH
Confidence 4899999999999994
No 471
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=55.86 E-value=20 Score=41.35 Aligned_cols=70 Identities=20% Similarity=0.166 Sum_probs=48.5
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEe
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
++||.|+|+.-|..+++.+... ++.+..++|+...... ...+..+.++|+|||. .+..+ +++.
T Consensus 257 ~~lVF~~t~~~~~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~rG----iDip 322 (423)
T PRK04837 257 RAIIFANTKHRCEEIWGHLAAD-----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAARG----LHIP 322 (423)
T ss_pred eEEEEECCHHHHHHHHHHHHhC-----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhhcC----CCcc
Confidence 6899999999998888777653 6778888887654322 2345567789999993 44433 4455
Q ss_pred cceeeee
Q 003178 534 GLKMLVL 540 (842)
Q Consensus 534 ~l~~lVl 540 (842)
++++||.
T Consensus 323 ~v~~VI~ 329 (423)
T PRK04837 323 AVTHVFN 329 (423)
T ss_pred ccCEEEE
Confidence 6665553
No 472
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=55.77 E-value=6.4 Score=42.57 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=13.9
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
.++++.+|.|.|||..
T Consensus 53 DHvLl~GPPGlGKTTL 68 (332)
T COG2255 53 DHVLLFGPPGLGKTTL 68 (332)
T ss_pred CeEEeeCCCCCcHHHH
Confidence 4688999999999983
No 473
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.74 E-value=20 Score=42.18 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=19.0
Q ss_pred ecceeeeecccccccccccccchhhhhhccc
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLP 563 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~ 563 (842)
...+++||||||.|....+ ..+...+...+
T Consensus 118 ~~~KVvIIDEad~Lt~~a~-naLLk~LEepp 147 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAF-NALLKTLEEPP 147 (486)
T ss_pred CCeeEEEEEChhhcCHHHH-HHHHHHHhcCC
Confidence 4678999999998865443 23333444433
No 474
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=55.01 E-value=13 Score=39.96 Aligned_cols=18 Identities=22% Similarity=0.195 Sum_probs=15.6
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.|.-++|.|++|+|||..
T Consensus 35 ~gs~~lI~G~pGtGKT~l 52 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLM 52 (259)
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 467789999999999984
No 475
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=54.98 E-value=8.5 Score=40.92 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=18.2
Q ss_pred hhcCc-ceEEeeccCCCceeeehhHHHH
Q 003178 413 CLEGK-DAVVKAKTGTGKSIAFLLPAIE 439 (842)
Q Consensus 413 il~g~-dvii~A~TGSGKTlafllPil~ 439 (842)
++... .++|.|++|||||.. ++-++.
T Consensus 9 l~~~~fr~viIG~sGSGKT~l-i~~lL~ 35 (241)
T PF04665_consen 9 LLKDPFRMVIIGKSGSGKTTL-IKSLLY 35 (241)
T ss_pred hcCCCceEEEECCCCCCHHHH-HHHHHH
Confidence 34443 688999999999994 444443
No 476
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=54.90 E-value=7.6 Score=35.87 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=12.5
Q ss_pred eEEeeccCCCceee
Q 003178 419 AVVKAKTGTGKSIA 432 (842)
Q Consensus 419 vii~A~TGSGKTla 432 (842)
|+|.|++|||||.+
T Consensus 1 I~i~G~~GsGKtTi 14 (129)
T PF13238_consen 1 IGISGIPGSGKTTI 14 (129)
T ss_dssp EEEEESTTSSHHHH
T ss_pred CEEECCCCCCHHHH
Confidence 57999999999994
No 477
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.68 E-value=6.1 Score=47.63 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.7
Q ss_pred ceEEeeccCCCceeee
Q 003178 418 DAVVKAKTGTGKSIAF 433 (842)
Q Consensus 418 dvii~A~TGSGKTlaf 433 (842)
.+|+.+|.|+|||.+.
T Consensus 40 a~Lf~GPpG~GKTtiA 55 (624)
T PRK14959 40 AYLFSGTRGVGKTTIA 55 (624)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999963
No 478
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=54.56 E-value=13 Score=43.07 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=52.7
Q ss_pred ceE-EEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc------ccccCCCCCCc
Q 003178 632 YKV-IVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD------VSARGMDYPDV 700 (842)
Q Consensus 632 ~ki-IVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd------v~arGlDip~V 700 (842)
+++ +|.|+|+.-+.+++...++. ++++.++||+.+..++...++ -..-|+|||. +--.++|+-.|
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceee
Confidence 444 56689999998888776655 788999999999887776655 3567999997 22367889899
Q ss_pred ceeE
Q 003178 701 TSVV 704 (842)
Q Consensus 701 ~~VI 704 (842)
+++|
T Consensus 372 S~LV 375 (731)
T KOG0339|consen 372 SYLV 375 (731)
T ss_pred eEEE
Confidence 8876
No 479
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=54.22 E-value=14 Score=44.67 Aligned_cols=54 Identities=20% Similarity=0.189 Sum_probs=36.7
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccch--hHHHHHHHHHHHhhh
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR--ELASQIAAEAIALLK 480 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTR--eLA~Qi~~~l~~l~~ 480 (842)
..+++|.|+||+|||..+.+-+.+.+... ..++++=|-. +|...++..++....
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~g-----------~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRRG-----------DVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHcC-----------CeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 56889999999999997555444444321 1478888876 466666666666543
No 480
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=54.16 E-value=11 Score=39.69 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=19.7
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHHH
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l~ 442 (842)
..|.-++|.|++|+|||.. ++-++.++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~-~~~~~~~~~ 38 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAF-ALNIAENIA 38 (242)
T ss_pred CCCeEEEEEeCCCCCHHHH-HHHHHHHHH
Confidence 4567789999999999984 444443333
No 481
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=54.06 E-value=19 Score=40.25 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=13.5
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
.+|+.+|.|+|||..
T Consensus 164 SmIlWGppG~GKTtl 178 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTL 178 (554)
T ss_pred ceEEecCCCCchHHH
Confidence 689999999999983
No 482
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=54.02 E-value=12 Score=38.97 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=15.6
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.|..+++.+++|+|||..
T Consensus 19 ~G~~~~i~G~~G~GKT~l 36 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIF 36 (229)
T ss_pred CCeEEEEECCCCCChHHH
Confidence 467889999999999984
No 483
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=53.93 E-value=8.1 Score=36.76 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=13.3
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
+|++.|++|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 489999999999993
No 484
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.82 E-value=3.7 Score=49.52 Aligned_cols=147 Identities=20% Similarity=0.191 Sum_probs=74.1
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCc-----eeEE
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDG-----IGVL 488 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~-----i~v~ 488 (842)
..|+.|-+++|.|+|||. ++-++++++....+. ..|==+|-+++=....+.-..+.+..|- +.-.
T Consensus 492 ~pGe~vALVGPSGsGKST--iasLL~rfY~PtsG~--------IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eN 561 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKST--IASLLLRFYDPTSGR--------ILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIREN 561 (716)
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHHHhcCCCCCe--------EEECCeehhhcCHHHHHHHeeeeeccceeecccHHHH
Confidence 348899999999999999 556677777533211 1111256666655544433222222211 1112
Q ss_pred EEecceeeeeccc-------------cccCCCceEEecCccchhhhcccc--CCceEEEecceeeeeccccccccccccc
Q 003178 489 TLVGGTRFKVDQR-------------RLESDPCQILVATPGRLLDHIENK--SGLSVRLMGLKMLVLDEADHLLDLGFRK 553 (842)
Q Consensus 489 ~l~Gg~~~~~~~~-------------~l~~~~~~IIVaTPgrLl~~L~~~--~~~~~~L~~l~~lVlDEAh~lld~gf~~ 553 (842)
+.||-.+...+.. .-...+++-.|+.-|..+.-=+.. .-....+++-.++|+|||---+|..-+.
T Consensus 562 I~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~ 641 (716)
T KOG0058|consen 562 IAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEY 641 (716)
T ss_pred HhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHH
Confidence 2233222111100 000123444455444332100000 0000125678899999999999877777
Q ss_pred chhhhhhcccccccceee
Q 003178 554 DVENIVDCLPRRRQSLLF 571 (842)
Q Consensus 554 ~i~~Il~~l~~~~q~il~ 571 (842)
.+...+..+..+ ++++.
T Consensus 642 lVq~aL~~~~~~-rTVlv 658 (716)
T KOG0058|consen 642 LVQEALDRLMQG-RTVLV 658 (716)
T ss_pred HHHHHHHHhhcC-CeEEE
Confidence 777777766666 44443
No 485
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=53.66 E-value=18 Score=43.87 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=23.2
Q ss_pred EEecCccchhhhccccCCceEEEecceeeeeccccccc
Q 003178 510 ILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547 (842)
Q Consensus 510 IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~ll 547 (842)
-|=+-||++.+.|..-.. .--++.|||+|.+.
T Consensus 487 YVGAMPGkiIq~LK~v~t------~NPliLiDEvDKlG 518 (906)
T KOG2004|consen 487 YVGAMPGKIIQCLKKVKT------ENPLILIDEVDKLG 518 (906)
T ss_pred eeccCChHHHHHHHhhCC------CCceEEeehhhhhC
Confidence 344679999998865421 22469999999987
No 486
>PHA00350 putative assembly protein
Probab=53.38 E-value=13 Score=42.49 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=13.2
Q ss_pred eEEeeccCCCceeeeh
Q 003178 419 AVVKAKTGTGKSIAFL 434 (842)
Q Consensus 419 vii~A~TGSGKTlafl 434 (842)
.++.|..|||||+..+
T Consensus 4 ~l~tG~pGSGKT~~aV 19 (399)
T PHA00350 4 YAIVGRPGSYKSYEAV 19 (399)
T ss_pred EEEecCCCCchhHHHH
Confidence 4688999999999644
No 487
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=53.18 E-value=6 Score=45.43 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=23.8
Q ss_pred hhhhhhhhhcCcceEEeeccCCCceeeehh
Q 003178 406 QEATLSACLEGKDAVVKAKTGTGKSIAFLL 435 (842)
Q Consensus 406 Q~~aI~~il~g~dvii~A~TGSGKTlafll 435 (842)
+...|+.-+.|++-+|.+.||+|||.+.++
T Consensus 9 ~~v~l~~~~~NRHGLIaGATGTGKTvTLqv 38 (502)
T PF05872_consen 9 APVYLPLKMANRHGLIAGATGTGKTVTLQV 38 (502)
T ss_pred CceecChhhccccceeeccCCCCceehHHH
Confidence 344566677899999999999999997433
No 488
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=53.16 E-value=14 Score=46.58 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=12.8
Q ss_pred eEEeeccCCCceee
Q 003178 419 AVVKAKTGTGKSIA 432 (842)
Q Consensus 419 vii~A~TGSGKTla 432 (842)
+++.||||+|||..
T Consensus 599 ~lf~Gp~GvGKT~l 612 (852)
T TIGR03345 599 FLLVGPSGVGKTET 612 (852)
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999994
No 489
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=52.87 E-value=8.9 Score=39.30 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=16.7
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHH
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~ 442 (842)
...+++|.|.||||||.+ +..++..+.
T Consensus 37 ~~~h~li~G~tgsGKS~~-l~~ll~~l~ 63 (205)
T PF01580_consen 37 KNPHLLIAGATGSGKSTL-LRTLLLSLA 63 (205)
T ss_dssp GS-SEEEE--TTSSHHHH-HHHHHHHHH
T ss_pred CCceEEEEcCCCCCccHH-HHHHHHHHH
Confidence 345899999999999996 333443443
No 490
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=52.79 E-value=5.8 Score=41.32 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=20.3
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHH
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAV 441 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l 441 (842)
..|.-++|++|.|||||+ +|-+++.|
T Consensus 26 ~~Gevv~iiGpSGSGKST--lLRclN~L 51 (240)
T COG1126 26 EKGEVVVIIGPSGSGKST--LLRCLNGL 51 (240)
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHHCC
Confidence 457788999999999999 56555544
No 491
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=52.76 E-value=9.7 Score=38.64 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=19.8
Q ss_pred hhhhhhhcCcc--eEEeeccCCCceee
Q 003178 408 ATLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 408 ~aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.++..++.|.| +++.++||||||.+
T Consensus 14 ~~v~~~~~G~n~~i~~yG~tGsGKT~T 40 (186)
T cd01363 14 PLLQSALDGYNVCIFAYGQTGSGKTYT 40 (186)
T ss_pred HHHHHHhCCcceeEEEECCCCCcceEe
Confidence 45667777765 56889999999987
No 492
>PTZ00110 helicase; Provisional
Probab=51.09 E-value=18 Score=43.33 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=48.9
Q ss_pred eEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEE
Q 003178 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (842)
Q Consensus 456 ~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L 532 (842)
.++||.|+|+.-|..++..+... ++.+..++|+...... ...+..+...|||||. .+... +++
T Consensus 378 ~k~LIF~~t~~~a~~l~~~L~~~-----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~~rG----IDi 443 (545)
T PTZ00110 378 DKILIFVETKKGADFLTKELRLD-----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VASRG----LDV 443 (545)
T ss_pred CeEEEEecChHHHHHHHHHHHHc-----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hhhcC----CCc
Confidence 37999999999999888877543 5667788887654322 2445556789999993 34333 455
Q ss_pred ecceeeee
Q 003178 533 MGLKMLVL 540 (842)
Q Consensus 533 ~~l~~lVl 540 (842)
.++++||.
T Consensus 444 ~~v~~VI~ 451 (545)
T PTZ00110 444 KDVKYVIN 451 (545)
T ss_pred ccCCEEEE
Confidence 67777664
No 493
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=51.05 E-value=9 Score=45.97 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=27.3
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhH
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReL 467 (842)
...+++++.|+||||||.+ +-.++..+...+ -+++|+=|+-+.
T Consensus 174 ~e~~h~li~G~tGsGKs~~-i~~ll~~~~~~g----------~~~ii~D~~g~~ 216 (566)
T TIGR02759 174 SETQHILIHGTTGSGKSVA-IRKLLRWIRQRG----------DRAIIYDKGCTF 216 (566)
T ss_pred ccccceEEEcCCCCCHHHH-HHHHHHHHHhcC----------CeEEEEECCCCe
Confidence 3467899999999999973 333343333221 257777776443
No 494
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=51.01 E-value=24 Score=44.59 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.8
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
..++++.||+|+|||..
T Consensus 194 ~~n~lL~G~pGvGKT~l 210 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAI 210 (852)
T ss_pred CCceEEEcCCCCCHHHH
Confidence 35889999999999984
No 495
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=50.87 E-value=16 Score=36.31 Aligned_cols=50 Identities=28% Similarity=0.364 Sum_probs=33.9
Q ss_pred hhHhhhcccceeeee-----ehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHh
Q 003178 389 LTIKALTAAGYIQMT-----RVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 389 ~l~~~L~~~g~~~~t-----~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
.+++.++++||.-+. ..-...+...+.++-+++.+++|.|||. +++.+..
T Consensus 3 ~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSS-----LiN~L~~ 57 (161)
T PF03193_consen 3 ELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSS-----LINALLP 57 (161)
T ss_dssp HHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHH-----HHHHHHT
T ss_pred HHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHH-----HHHHHHh
Confidence 345556666766332 2334456666778999999999999999 5565553
No 496
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=50.76 E-value=6.5 Score=36.28 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=12.5
Q ss_pred eEEeeccCCCceee
Q 003178 419 AVVKAKTGTGKSIA 432 (842)
Q Consensus 419 vii~A~TGSGKTla 432 (842)
++|.|++|||||+.
T Consensus 2 I~I~G~~gsGKST~ 15 (121)
T PF13207_consen 2 IIISGPPGSGKSTL 15 (121)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67999999999993
No 497
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=50.51 E-value=18 Score=44.95 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=15.0
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
..++|+.||+|+|||..
T Consensus 203 ~~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAI 219 (731)
T ss_pred CCceEEECCCCCCHHHH
Confidence 35899999999999994
No 498
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=50.35 E-value=14 Score=43.58 Aligned_cols=51 Identities=18% Similarity=0.224 Sum_probs=33.7
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
|.-++|.+++|+|||+. ++-.+....+.. -+++|++ +-|-..|+...+..+
T Consensus 263 gs~~li~G~~G~GKt~l-~~~f~~~~~~~g----------e~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 263 DSIILATGATGTGKTLL-VSKFLENACANK----------ERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHHCC----------CeEEEEE-eeCCHHHHHHHHHHc
Confidence 46789999999999994 222222222221 1477766 567778888887766
No 499
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=50.26 E-value=7 Score=41.11 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=21.2
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHHH
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l~ 442 (842)
..|.-+.|.+|+|||||+ ++-++..+.
T Consensus 29 ~~Ge~vaI~GpSGSGKST--LLniig~ld 55 (226)
T COG1136 29 EAGEFVAIVGPSGSGKST--LLNLLGGLD 55 (226)
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhccc
Confidence 457788899999999999 666665443
No 500
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=49.68 E-value=5 Score=41.22 Aligned_cols=144 Identities=26% Similarity=0.322 Sum_probs=74.1
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecce
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~ 494 (842)
.|+-.-+.+|.|.||+. ++.++.++.....+... ..+ +-+--+|+.+||..+. .+++--.....+.|.-+++-.
T Consensus 26 ~g~iTs~IGPNGAGKST--LLS~~sRL~~~d~G~i~--i~g-~~~~~~~s~~LAk~lS-ILkQ~N~i~~rlTV~dLv~FG 99 (252)
T COG4604 26 KGGITSIIGPNGAGKST--LLSMMSRLLKKDSGEIT--IDG-LELTSTPSKELAKKLS-ILKQENHINSRLTVRDLVGFG 99 (252)
T ss_pred CCceeEEECCCCccHHH--HHHHHHHhccccCceEE--Eee-eecccCChHHHHHHHH-HHHhhchhhheeEHHHHhhcC
Confidence 46777889999999999 78888888765433211 111 3355678999987643 222221111122332233322
Q ss_pred eeeeccccccCCCceEEec---------CccchhhhccccCC---c--eEEEecceeeeecccccccccccccchhhhhh
Q 003178 495 RFKVDQRRLESDPCQILVA---------TPGRLLDHIENKSG---L--SVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (842)
Q Consensus 495 ~~~~~~~~l~~~~~~IIVa---------TPgrLl~~L~~~~~---~--~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~ 560 (842)
.+...+-++....-.+|=. --+|.++.|.-+.. + -....+-+||.+||-=.=+|+-+..++.+++.
T Consensus 100 RfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lr 179 (252)
T COG4604 100 RFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179 (252)
T ss_pred CCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHH
Confidence 2322222222211011100 01233333322110 0 11234678999999887778877777777776
Q ss_pred cccc
Q 003178 561 CLPR 564 (842)
Q Consensus 561 ~l~~ 564 (842)
.+..
T Consensus 180 rla~ 183 (252)
T COG4604 180 RLAD 183 (252)
T ss_pred HHHH
Confidence 6543
Done!