Query 003178
Match_columns 842
No_of_seqs 542 out of 3863
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 16:07:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sqw_A ATP-dependent RNA helic 100.0 3.4E-58 1.2E-62 544.6 18.8 449 386-841 28-506 (579)
2 3i5x_A ATP-dependent RNA helic 100.0 7.5E-57 2.6E-61 530.8 19.1 447 385-838 78-554 (563)
3 2db3_A ATP-dependent RNA helic 100.0 2.1E-56 7.3E-61 511.1 19.4 348 377-739 54-408 (434)
4 2i4i_A ATP-dependent RNA helic 100.0 7.1E-53 2.4E-57 476.6 18.8 359 378-746 14-391 (417)
5 2j0s_A ATP-dependent RNA helic 100.0 2.6E-52 8.8E-57 471.7 18.1 354 377-747 35-392 (410)
6 3fmp_B ATP-dependent RNA helic 100.0 8.2E-53 2.8E-57 486.8 8.8 359 370-748 83-457 (479)
7 3eiq_A Eukaryotic initiation f 100.0 1.5E-51 5.1E-56 465.0 14.5 354 378-747 39-396 (414)
8 1xti_A Probable ATP-dependent 100.0 7E-51 2.4E-55 456.0 18.0 353 378-746 7-366 (391)
9 3fht_A ATP-dependent RNA helic 100.0 1.5E-50 5.1E-55 456.0 20.3 358 370-747 16-389 (412)
10 1s2m_A Putative ATP-dependent 100.0 8.8E-51 3E-55 457.3 18.0 353 378-747 20-374 (400)
11 3pey_A ATP-dependent RNA helic 100.0 4.2E-50 1.4E-54 449.0 15.0 346 378-746 4-365 (395)
12 1hv8_A Putative ATP-dependent 100.0 8.7E-50 3E-54 442.0 12.6 343 379-747 6-354 (367)
13 1fuu_A Yeast initiation factor 100.0 2.3E-50 7.8E-55 451.8 3.6 350 379-748 21-376 (394)
14 2v1x_A ATP-dependent DNA helic 100.0 5.8E-48 2E-52 456.3 16.1 337 380-746 22-382 (591)
15 2z0m_A 337AA long hypothetical 100.0 4.4E-48 1.5E-52 423.6 11.1 332 386-748 1-332 (337)
16 1oyw_A RECQ helicase, ATP-depe 100.0 1.8E-47 6.1E-52 446.9 9.9 334 379-745 2-350 (523)
17 3l9o_A ATP-dependent RNA helic 100.0 1.3E-46 4.3E-51 471.4 13.4 328 379-738 162-597 (1108)
18 3oiy_A Reverse gyrase helicase 100.0 1.9E-46 6.5E-51 425.2 9.4 312 391-735 11-362 (414)
19 3fho_A ATP-dependent RNA helic 100.0 5.4E-46 1.8E-50 433.4 7.3 336 381-739 121-471 (508)
20 2va8_A SSO2462, SKI2-type heli 100.0 3E-43 1E-47 426.7 18.9 330 379-739 8-409 (715)
21 2zj8_A DNA helicase, putative 100.0 2.8E-43 9.5E-48 427.1 16.5 332 380-739 2-388 (720)
22 1tf5_A Preprotein translocase 100.0 1.1E-43 3.8E-48 422.0 10.3 323 396-740 79-547 (844)
23 4a2p_A RIG-I, retinoic acid in 100.0 4.1E-43 1.4E-47 411.2 13.2 331 397-739 3-509 (556)
24 2p6r_A Afuhel308 helicase; pro 100.0 5.8E-43 2E-47 423.2 14.7 332 380-740 2-390 (702)
25 3tbk_A RIG-I helicase domain; 100.0 1.3E-42 4.3E-47 406.2 11.1 329 401-741 4-510 (555)
26 4ddu_A Reverse gyrase; topoiso 100.0 1.4E-42 4.8E-47 434.7 10.3 279 397-710 75-388 (1104)
27 2ykg_A Probable ATP-dependent 100.0 2.6E-42 9E-47 416.7 10.8 338 391-740 3-518 (696)
28 4a2q_A RIG-I, retinoic acid in 100.0 4.6E-41 1.6E-45 412.0 15.4 332 396-739 243-750 (797)
29 2fsf_A Preprotein translocase 100.0 5E-41 1.7E-45 398.1 14.1 322 397-740 71-585 (853)
30 2xgj_A ATP-dependent RNA helic 100.0 3.6E-41 1.2E-45 418.8 13.1 320 394-746 80-508 (1010)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 3E-41 1E-45 422.5 10.8 309 395-744 52-460 (1054)
32 1nkt_A Preprotein translocase 100.0 4.9E-40 1.7E-44 389.8 13.2 322 397-740 108-619 (922)
33 4gl2_A Interferon-induced heli 100.0 1.1E-40 3.9E-45 402.5 6.8 327 401-738 7-518 (699)
34 1wp9_A ATP-dependent RNA helic 100.0 1.3E-39 4.3E-44 372.0 14.8 320 401-738 9-475 (494)
35 4a4z_A Antiviral helicase SKI2 100.0 5.7E-40 1.9E-44 407.9 12.8 306 396-735 35-489 (997)
36 4a2w_A RIG-I, retinoic acid in 100.0 7.4E-40 2.5E-44 406.5 13.5 332 396-739 243-750 (936)
37 2whx_A Serine protease/ntpase/ 100.0 3E-40 1E-44 391.8 8.4 306 381-746 151-489 (618)
38 4f92_B U5 small nuclear ribonu 100.0 5.3E-39 1.8E-43 415.6 19.8 339 398-744 76-479 (1724)
39 4f92_B U5 small nuclear ribonu 100.0 3.8E-39 1.3E-43 416.9 18.0 343 386-746 911-1316(1724)
40 1gm5_A RECG; helicase, replica 100.0 2.2E-39 7.4E-44 391.6 10.1 317 390-737 358-696 (780)
41 2jlq_A Serine protease subunit 100.0 3E-39 1E-43 371.0 10.2 285 398-737 1-310 (451)
42 2wv9_A Flavivirin protease NS2 100.0 1.1E-39 3.8E-44 389.4 6.7 296 391-744 200-542 (673)
43 2xau_A PRE-mRNA-splicing facto 100.0 7.8E-39 2.7E-43 388.6 12.6 335 379-740 72-445 (773)
44 1yks_A Genome polyprotein [con 100.0 9.3E-39 3.2E-43 365.6 8.0 276 412-746 4-310 (440)
45 2oca_A DAR protein, ATP-depend 100.0 4.5E-38 1.5E-42 366.2 12.0 312 398-737 110-454 (510)
46 3o8b_A HCV NS3 protease/helica 100.0 8.8E-38 3E-42 368.6 10.6 279 400-741 216-517 (666)
47 2z83_A Helicase/nucleoside tri 100.0 2.5E-37 8.6E-42 355.7 11.3 281 398-738 6-313 (459)
48 2eyq_A TRCF, transcription-rep 100.0 1.9E-36 6.4E-41 381.5 18.7 322 385-739 587-923 (1151)
49 2fwr_A DNA repair protein RAD2 100.0 4.9E-36 1.7E-40 345.6 10.5 285 401-734 93-448 (472)
50 3rc3_A ATP-dependent RNA helic 100.0 2.9E-35 1E-39 350.6 16.2 295 387-739 130-445 (677)
51 2v6i_A RNA helicase; membrane, 100.0 5E-35 1.7E-39 333.9 10.7 268 415-735 1-288 (431)
52 3h1t_A Type I site-specific re 100.0 4.5E-33 1.5E-37 330.1 14.1 309 400-727 177-545 (590)
53 3fmo_B ATP-dependent RNA helic 100.0 5.4E-33 1.8E-37 302.2 9.7 198 369-580 82-282 (300)
54 3dmq_A RNA polymerase-associat 100.0 1.5E-31 5.2E-36 332.6 13.0 318 400-737 152-612 (968)
55 3fe2_A Probable ATP-dependent 100.0 7.1E-32 2.4E-36 283.7 6.8 195 377-579 27-221 (242)
56 3iuy_A Probable ATP-dependent 100.0 5.7E-31 2E-35 273.8 7.2 194 378-579 18-212 (228)
57 1z63_A Helicase of the SNF2/RA 100.0 5.3E-30 1.8E-34 297.4 16.0 303 401-733 37-446 (500)
58 1vec_A ATP-dependent RNA helic 100.0 8.3E-31 2.8E-35 267.8 7.5 189 379-579 3-191 (206)
59 3jux_A Protein translocase sub 100.0 6.1E-30 2.1E-34 297.7 15.2 321 401-740 75-589 (822)
60 1q0u_A Bstdead; DEAD protein, 100.0 7.4E-31 2.5E-35 271.4 6.4 189 379-579 4-195 (219)
61 3ly5_A ATP-dependent RNA helic 100.0 7.4E-31 2.5E-35 279.7 6.3 195 377-579 50-246 (262)
62 2oxc_A Probable ATP-dependent 100.0 9.4E-31 3.2E-35 273.0 6.7 189 378-579 23-212 (230)
63 2pl3_A Probable ATP-dependent 100.0 2E-30 6.7E-35 271.2 9.0 194 377-579 23-216 (236)
64 3bor_A Human initiation factor 100.0 8.3E-31 2.8E-35 274.8 5.9 190 378-579 29-218 (237)
65 3ber_A Probable ATP-dependent 100.0 2.2E-30 7.6E-35 273.9 7.6 190 378-579 42-231 (249)
66 1wrb_A DJVLGB; RNA helicase, D 100.0 2.5E-30 8.7E-35 273.4 8.0 197 378-579 22-223 (253)
67 1t6n_A Probable ATP-dependent 100.0 3.3E-30 1.1E-34 266.4 5.2 190 379-579 14-204 (220)
68 1qde_A EIF4A, translation init 100.0 7.8E-30 2.7E-34 264.2 8.0 188 378-579 13-200 (224)
69 3dkp_A Probable ATP-dependent 100.0 1E-29 3.4E-34 267.4 5.5 192 379-579 25-224 (245)
70 2gxq_A Heat resistant RNA depe 100.0 8.7E-30 3E-34 260.1 4.3 188 380-579 2-189 (207)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.3E-28 4.4E-33 304.8 13.2 316 399-737 269-708 (1038)
72 3mwy_W Chromo domain-containin 99.9 2.1E-27 7.1E-32 290.8 18.4 315 401-737 236-683 (800)
73 1c4o_A DNA nucleotide excision 99.9 7.3E-27 2.5E-31 279.5 16.2 171 564-742 379-554 (664)
74 1z3i_X Similar to RAD54-like; 99.9 3.4E-26 1.2E-30 273.6 20.0 321 401-737 55-527 (644)
75 2d7d_A Uvrabc system protein B 99.9 2E-26 6.8E-31 275.6 5.3 320 388-742 170-560 (661)
76 3eaq_A Heat resistant RNA depe 99.9 4.6E-25 1.6E-29 227.6 12.2 144 600-747 4-147 (212)
77 2hjv_A ATP-dependent RNA helic 99.9 7.4E-25 2.5E-29 216.4 11.3 147 598-748 6-152 (163)
78 2ipc_A Preprotein translocase 99.9 1E-24 3.6E-29 258.0 11.7 136 397-550 76-219 (997)
79 3i32_A Heat resistant RNA depe 99.9 1.3E-24 4.3E-29 235.7 11.2 144 601-748 2-145 (300)
80 2rb4_A ATP-dependent RNA helic 99.9 2.1E-24 7.2E-29 215.6 9.9 146 598-747 4-156 (175)
81 1t5i_A C_terminal domain of A 99.9 1.7E-24 5.9E-29 215.9 9.1 145 599-747 3-148 (172)
82 2jgn_A DBX, DDX3, ATP-dependen 99.9 4.2E-24 1.5E-28 215.7 10.2 146 598-746 16-161 (185)
83 1fuk_A Eukaryotic initiation f 99.9 4.2E-24 1.4E-28 211.3 8.2 143 601-747 3-146 (165)
84 2p6n_A ATP-dependent RNA helic 99.9 7.9E-24 2.7E-28 214.8 9.3 144 598-746 26-170 (191)
85 2yjt_D ATP-dependent RNA helic 99.8 2.3E-24 7.9E-29 214.4 0.0 144 601-748 3-147 (170)
86 2vl7_A XPD; helicase, unknown 99.9 7.8E-22 2.7E-26 231.1 13.2 312 397-737 4-520 (540)
87 3llm_A ATP-dependent RNA helic 99.8 1.9E-21 6.4E-26 203.5 8.3 167 394-579 54-222 (235)
88 3b6e_A Interferon-induced heli 99.8 9.7E-22 3.3E-26 201.2 2.9 170 397-574 29-216 (216)
89 1rif_A DAR protein, DNA helica 99.8 6.7E-20 2.3E-24 196.8 7.8 153 401-578 113-265 (282)
90 3crv_A XPD/RAD3 related DNA he 99.8 2.4E-19 8.2E-24 210.6 11.5 131 401-548 3-187 (551)
91 4a15_A XPD helicase, ATP-depen 99.7 8.5E-17 2.9E-21 191.0 10.6 84 401-495 3-90 (620)
92 1z5z_A Helicase of the SNF2/RA 99.6 1.2E-16 4.3E-21 170.6 7.9 122 610-733 93-217 (271)
93 2fz4_A DNA repair protein RAD2 99.6 5E-17 1.7E-21 170.3 4.6 139 400-578 92-231 (237)
94 1w36_D RECD, exodeoxyribonucle 98.5 7.2E-08 2.5E-12 114.2 6.6 144 403-572 151-296 (608)
95 3e1s_A Exodeoxyribonuclease V, 97.5 6.7E-05 2.3E-09 88.0 5.6 63 401-474 189-251 (574)
96 3upu_A ATP-dependent DNA helic 97.5 7.7E-05 2.6E-09 85.1 5.7 70 396-475 20-94 (459)
97 2xzl_A ATP-dependent helicase 97.4 0.00015 5E-09 88.3 7.6 70 399-478 358-427 (802)
98 2gk6_A Regulator of nonsense t 97.4 8.9E-05 3E-09 88.0 5.2 70 399-478 178-247 (624)
99 4b3f_X DNA-binding protein smu 97.4 7E-05 2.4E-09 89.3 3.9 67 401-478 189-256 (646)
100 2wjy_A Regulator of nonsense t 97.3 0.00013 4.6E-09 88.6 5.0 70 399-478 354-423 (800)
101 3hgt_A HDA1 complex subunit 3; 96.9 0.0014 4.7E-08 70.7 7.6 121 610-737 106-236 (328)
102 2o0j_A Terminase, DNA packagin 96.1 0.011 3.6E-07 65.7 8.4 74 401-483 163-236 (385)
103 3cpe_A Terminase, DNA packagin 95.7 0.014 4.7E-07 68.7 7.8 74 401-483 163-236 (592)
104 3lfu_A DNA helicase II; SF1 he 95.2 0.015 5E-07 68.8 5.6 72 400-480 8-79 (647)
105 3ec2_A DNA replication protein 94.8 0.018 6.2E-07 56.2 4.0 18 415-432 37-54 (180)
106 2orw_A Thymidine kinase; TMTK, 94.5 0.062 2.1E-06 53.1 7.1 38 416-464 3-40 (184)
107 3vkw_A Replicase large subunit 94.4 0.014 4.9E-07 65.6 2.6 44 417-476 162-205 (446)
108 1uaa_A REP helicase, protein ( 94.4 0.028 9.7E-07 67.0 5.1 71 401-480 2-72 (673)
109 2kjq_A DNAA-related protein; s 94.4 0.012 4.3E-07 56.1 1.6 42 534-576 83-125 (149)
110 1xx6_A Thymidine kinase; NESG, 94.0 0.056 1.9E-06 53.9 5.7 38 416-464 8-45 (191)
111 1pjr_A PCRA; DNA repair, DNA r 93.9 0.056 1.9E-06 65.1 6.4 71 401-480 11-81 (724)
112 2j9r_A Thymidine kinase; TK1, 93.6 0.083 2.8E-06 53.6 6.1 39 416-465 28-66 (214)
113 3u4q_A ATP-dependent helicase/ 92.9 0.058 2E-06 68.8 4.6 74 400-480 9-82 (1232)
114 1l8q_A Chromosomal replication 92.6 0.12 4.2E-06 55.3 6.0 17 416-432 37-53 (324)
115 3e2i_A Thymidine kinase; Zn-bi 92.2 0.12 4.3E-06 52.3 4.9 39 416-465 28-66 (219)
116 3bos_A Putative DNA replicatio 91.6 0.096 3.3E-06 52.8 3.5 18 415-432 51-68 (242)
117 1d2n_A N-ethylmaleimide-sensit 90.8 0.25 8.5E-06 51.4 5.8 17 416-432 64-80 (272)
118 2b8t_A Thymidine kinase; deoxy 90.4 0.25 8.5E-06 50.5 5.2 39 416-465 12-50 (223)
119 2w58_A DNAI, primosome compone 90.2 0.27 9.3E-06 48.5 5.2 16 417-432 55-70 (202)
120 1w4r_A Thymidine kinase; type 89.8 0.2 6.7E-06 50.0 3.7 38 416-464 20-57 (195)
121 2z4s_A Chromosomal replication 89.6 0.39 1.3E-05 54.1 6.4 17 416-432 130-146 (440)
122 2orv_A Thymidine kinase; TP4A 89.3 0.2 6.8E-06 51.4 3.4 39 416-465 19-57 (234)
123 2d7d_A Uvrabc system protein B 89.3 0.28 9.7E-06 58.3 5.2 66 401-480 12-82 (661)
124 2qby_B CDC6 homolog 3, cell di 89.3 0.33 1.1E-05 52.8 5.4 17 416-432 45-61 (384)
125 3h4m_A Proteasome-activating n 88.9 0.37 1.3E-05 50.3 5.3 53 378-432 13-67 (285)
126 2zpa_A Uncharacterized protein 88.7 0.21 7.3E-06 58.9 3.5 114 401-577 175-290 (671)
127 3u61_B DNA polymerase accessor 88.2 0.53 1.8E-05 50.2 6.0 37 534-570 105-141 (324)
128 2p65_A Hypothetical protein PF 88.1 1.5 5.2E-05 41.6 8.8 17 416-432 43-59 (187)
129 2chg_A Replication factor C sm 87.9 0.94 3.2E-05 44.3 7.3 16 417-432 39-54 (226)
130 1a5t_A Delta prime, HOLB; zinc 87.8 0.24 8.1E-06 53.6 3.0 31 402-432 3-40 (334)
131 2qgz_A Helicase loader, putati 87.0 0.61 2.1E-05 49.8 5.6 17 416-432 152-168 (308)
132 3te6_A Regulatory protein SIR3 86.9 0.4 1.4E-05 51.6 4.0 26 416-442 45-70 (318)
133 3syl_A Protein CBBX; photosynt 86.4 0.28 9.4E-06 51.9 2.4 17 416-432 67-83 (309)
134 1gm5_A RECG; helicase, replica 86.1 0.41 1.4E-05 57.9 3.9 77 631-707 417-498 (780)
135 1fnn_A CDC6P, cell division co 85.5 0.46 1.6E-05 51.6 3.7 15 418-432 46-60 (389)
136 2v1u_A Cell division control p 85.4 0.41 1.4E-05 51.8 3.3 17 416-432 44-60 (387)
137 3eie_A Vacuolar protein sortin 84.7 0.45 1.5E-05 51.0 3.1 52 378-432 14-67 (322)
138 2qby_A CDC6 homolog 1, cell di 84.4 1.6 5.5E-05 47.0 7.5 17 416-432 45-61 (386)
139 1sxj_E Activator 1 40 kDa subu 84.1 0.68 2.3E-05 49.9 4.2 40 533-573 133-172 (354)
140 3kl4_A SRP54, signal recogniti 82.5 0.89 3E-05 51.0 4.4 43 534-576 179-224 (433)
141 2w0m_A SSO2452; RECA, SSPF, un 78.4 1.2 4.1E-05 44.3 3.4 19 414-432 21-39 (235)
142 3oiy_A Reverse gyrase helicase 77.1 1.2 4.1E-05 49.1 3.2 76 630-705 63-145 (414)
143 3dm5_A SRP54, signal recogniti 76.9 1 3.5E-05 50.6 2.6 17 416-432 100-116 (443)
144 1iqp_A RFCS; clamp loader, ext 75.8 2.2 7.5E-05 44.9 4.7 15 418-432 48-62 (327)
145 3k1j_A LON protease, ATP-depen 74.9 7.8 0.00027 45.2 9.6 21 412-432 56-76 (604)
146 1t6n_A Probable ATP-dependent 74.7 4.2 0.00014 40.3 6.2 72 631-705 82-164 (220)
147 2ehv_A Hypothetical protein PH 73.2 0.61 2.1E-05 47.3 -0.5 43 534-576 135-182 (251)
148 2hjv_A ATP-dependent RNA helic 73.0 4.4 0.00015 38.4 5.7 70 457-540 37-109 (163)
149 3pfi_A Holliday junction ATP-d 72.9 2.6 9.1E-05 44.9 4.5 16 417-432 56-71 (338)
150 2chq_A Replication factor C sm 72.8 1.3 4.4E-05 46.6 1.9 37 534-571 102-138 (319)
151 3pvs_A Replication-associated 72.2 2.8 9.6E-05 47.2 4.7 16 417-432 51-66 (447)
152 2eyq_A TRCF, transcription-rep 72.2 2.3 7.8E-05 53.8 4.3 76 630-705 651-731 (1151)
153 1g5t_A COB(I)alamin adenosyltr 71.9 0.98 3.3E-05 45.0 0.7 47 533-579 119-167 (196)
154 1sxj_B Activator 1 37 kDa subu 71.8 3 0.0001 43.7 4.6 37 535-572 108-144 (323)
155 3hjh_A Transcription-repair-co 71.1 3.6 0.00012 46.7 5.3 91 415-523 13-118 (483)
156 2gno_A DNA polymerase III, gam 71.1 2.9 9.8E-05 44.5 4.2 37 534-571 82-118 (305)
157 2rb4_A ATP-dependent RNA helic 70.2 5 0.00017 38.4 5.4 70 457-540 36-108 (175)
158 3ber_A Probable ATP-dependent 70.0 5 0.00017 40.9 5.7 72 630-705 110-192 (249)
159 3m6a_A ATP-dependent protease 69.8 3.7 0.00013 47.3 5.1 18 415-432 107-124 (543)
160 1w5s_A Origin recognition comp 69.7 1.5 5E-05 48.0 1.6 17 416-432 50-68 (412)
161 3co5_A Putative two-component 69.7 1.6 5.5E-05 40.6 1.6 20 413-432 24-43 (143)
162 1e9r_A Conjugal transfer prote 69.6 2.7 9.1E-05 46.8 3.7 45 414-469 51-95 (437)
163 1fuk_A Eukaryotic initiation f 68.5 6.9 0.00024 37.0 6.0 70 457-540 32-104 (165)
164 3eaq_A Heat resistant RNA depe 67.5 6.9 0.00023 38.9 5.9 69 457-539 33-104 (212)
165 3n70_A Transport activator; si 67.1 1.7 6E-05 40.4 1.3 20 413-432 21-40 (145)
166 1jr3_A DNA polymerase III subu 67.0 6.1 0.00021 42.3 5.9 37 534-571 119-155 (373)
167 2oxc_A Probable ATP-dependent 66.8 4.9 0.00017 40.2 4.7 71 629-704 90-171 (230)
168 3bor_A Human initiation factor 66.8 4.8 0.00016 40.6 4.6 73 630-705 97-179 (237)
169 1vec_A ATP-dependent RNA helic 64.6 8.6 0.00029 37.3 5.9 56 630-689 70-130 (206)
170 1t5i_A C_terminal domain of A 64.4 8.6 0.0003 36.7 5.8 54 457-515 33-89 (172)
171 4ddu_A Reverse gyrase; topoiso 63.6 3.2 0.00011 52.1 3.1 76 630-705 120-202 (1104)
172 2jgn_A DBX, DDX3, ATP-dependen 63.3 9.1 0.00031 37.1 5.8 70 457-540 48-120 (185)
173 1xti_A Probable ATP-dependent 61.5 9.7 0.00033 40.9 6.2 73 630-705 75-158 (391)
174 2eyu_A Twitching motility prot 61.3 3.2 0.00011 43.0 2.1 28 413-442 22-49 (261)
175 1qde_A EIF4A, translation init 60.2 6.7 0.00023 38.8 4.2 71 629-704 80-160 (224)
176 3fe2_A Probable ATP-dependent 59.2 6.7 0.00023 39.5 4.1 72 630-705 101-182 (242)
177 3b85_A Phosphate starvation-in 59.1 4.1 0.00014 40.7 2.4 35 405-441 11-45 (208)
178 2pl3_A Probable ATP-dependent 59.0 6.5 0.00022 39.4 3.9 55 630-689 96-154 (236)
179 2p6n_A ATP-dependent RNA helic 58.9 8.8 0.0003 37.5 4.7 70 457-540 56-128 (191)
180 2v1x_A ATP-dependent DNA helic 56.5 5.9 0.0002 46.2 3.5 59 631-689 84-144 (591)
181 3cf2_A TER ATPase, transitiona 55.7 7.3 0.00025 47.0 4.1 16 416-431 238-253 (806)
182 2oap_1 GSPE-2, type II secreti 55.6 4.2 0.00014 46.6 1.9 18 414-431 258-275 (511)
183 2gza_A Type IV secretion syste 55.0 4.4 0.00015 44.1 2.0 19 413-431 172-190 (361)
184 1oyw_A RECQ helicase, ATP-depe 54.4 6.2 0.00021 45.2 3.2 59 631-689 65-123 (523)
185 1kgd_A CASK, peripheral plasma 54.1 4.8 0.00016 38.8 1.9 18 414-431 3-20 (180)
186 1lvg_A Guanylate kinase, GMP k 54.0 5.1 0.00018 39.3 2.1 26 415-442 3-28 (198)
187 3fmo_B ATP-dependent RNA helic 53.9 10 0.00035 39.9 4.5 69 630-705 161-241 (300)
188 2dr3_A UPF0273 protein PH0284; 53.6 8.7 0.0003 38.4 3.8 18 415-432 22-39 (247)
189 2gxq_A Heat resistant RNA depe 52.4 11 0.00036 36.7 4.1 72 630-705 71-150 (207)
190 3cmu_A Protein RECA, recombina 52.4 3.5 0.00012 54.5 0.7 17 416-432 1427-1443(2050)
191 1p9r_A General secretion pathw 52.3 5.8 0.0002 44.2 2.3 27 405-431 154-182 (418)
192 2ewv_A Twitching motility prot 52.2 5.3 0.00018 43.7 2.0 28 414-443 134-161 (372)
193 3cf0_A Transitional endoplasmi 51.3 4.5 0.00015 42.6 1.2 54 378-432 11-65 (301)
194 3iuy_A Probable ATP-dependent 51.3 7.9 0.00027 38.5 3.0 72 630-705 93-173 (228)
195 1w36_B RECB, exodeoxyribonucle 49.6 11 0.00037 47.7 4.6 66 414-480 15-81 (1180)
196 3jvv_A Twitching mobility prot 49.4 6.4 0.00022 42.8 2.1 18 415-432 122-139 (356)
197 2pt7_A CAG-ALFA; ATPase, prote 48.8 5.2 0.00018 43.0 1.2 57 46-124 1-57 (330)
198 4b4t_M 26S protease regulatory 48.8 5.3 0.00018 44.7 1.3 52 378-432 177-231 (434)
199 3i32_A Heat resistant RNA depe 48.5 14 0.0005 38.9 4.7 69 457-539 30-101 (300)
200 3ly5_A ATP-dependent RNA helic 48.3 15 0.0005 37.7 4.6 72 630-705 125-207 (262)
201 3tr0_A Guanylate kinase, GMP k 47.7 6.9 0.00023 38.0 1.8 17 415-431 6-22 (205)
202 2yjt_D ATP-dependent RNA helic 53.2 3.9 0.00013 39.0 0.0 70 457-540 32-104 (170)
203 1ixz_A ATP-dependent metallopr 46.5 6 0.00021 40.2 1.2 51 378-431 12-64 (254)
204 1jbk_A CLPB protein; beta barr 46.5 7 0.00024 36.8 1.6 17 416-432 43-59 (195)
205 1q0u_A Bstdead; DEAD protein, 46.0 14 0.00048 36.4 3.9 71 630-704 71-155 (219)
206 3ney_A 55 kDa erythrocyte memb 45.9 7.7 0.00026 38.5 1.8 18 414-431 17-34 (197)
207 1yks_A Genome polyprotein [con 45.5 15 0.00052 40.8 4.5 53 457-515 179-231 (440)
208 3iij_A Coilin-interacting nucl 45.0 8.9 0.0003 36.5 2.1 19 414-432 9-27 (180)
209 3dkp_A Probable ATP-dependent 44.6 12 0.00042 37.5 3.2 73 630-705 97-181 (245)
210 3c8u_A Fructokinase; YP_612366 44.1 9.4 0.00032 37.6 2.2 27 415-443 21-47 (208)
211 3fht_A ATP-dependent RNA helic 44.1 16 0.00056 39.3 4.4 70 457-540 268-340 (412)
212 3tau_A Guanylate kinase, GMP k 43.7 8.6 0.00029 37.9 1.8 17 415-431 7-23 (208)
213 2zts_A Putative uncharacterize 43.6 11 0.00037 37.6 2.6 18 415-432 29-46 (251)
214 1z6g_A Guanylate kinase; struc 43.4 9.5 0.00032 38.1 2.1 18 414-431 21-38 (218)
215 1ex7_A Guanylate kinase; subst 43.2 9.7 0.00033 37.3 2.1 23 417-444 2-24 (186)
216 2wv9_A Flavivirin protease NS2 43.2 18 0.0006 42.8 4.7 52 457-514 412-463 (673)
217 3a00_A Guanylate kinase, GMP k 42.8 9.6 0.00033 36.7 2.0 15 417-431 2-16 (186)
218 1fuu_A Yeast initiation factor 42.8 24 0.00083 37.6 5.5 71 630-705 88-168 (394)
219 3vaa_A Shikimate kinase, SK; s 42.8 9.7 0.00033 37.1 2.0 18 415-432 24-41 (199)
220 3u4q_B ATP-dependent helicase/ 42.6 17 0.00059 45.8 4.8 51 420-479 5-55 (1166)
221 3tbk_A RIG-I helicase domain; 42.4 19 0.00064 40.5 4.7 71 631-705 52-133 (555)
222 1s2m_A Putative ATP-dependent 42.1 27 0.00092 37.5 5.7 72 630-705 88-169 (400)
223 1c4o_A DNA nucleotide excision 42.1 19 0.00064 42.6 4.7 75 457-545 441-518 (664)
224 2i4i_A ATP-dependent RNA helic 42.1 16 0.00055 39.6 3.9 70 457-540 278-350 (417)
225 3pey_A ATP-dependent RNA helic 42.0 19 0.00066 38.4 4.5 72 457-542 245-319 (395)
226 1zp6_A Hypothetical protein AT 41.8 7.7 0.00026 37.2 1.1 19 413-431 6-24 (191)
227 4ag6_A VIRB4 ATPase, type IV s 41.7 11 0.00038 41.1 2.5 43 414-467 33-75 (392)
228 2bjv_A PSP operon transcriptio 41.5 9.5 0.00033 38.9 1.8 19 414-432 27-45 (265)
229 2x8a_A Nuclear valosin-contain 41.4 5.2 0.00018 41.7 -0.3 51 378-431 6-59 (274)
230 3nwn_A Kinesin-like protein KI 41.1 9.1 0.00031 41.7 1.6 24 409-432 96-121 (359)
231 1wrb_A DJVLGB; RNA helicase, D 41.0 17 0.00057 36.7 3.6 71 631-705 100-180 (253)
232 2qor_A Guanylate kinase; phosp 40.8 10 0.00036 37.1 1.9 19 413-431 9-27 (204)
233 2j41_A Guanylate kinase; GMP, 40.5 9.8 0.00033 36.9 1.7 18 414-431 4-21 (207)
234 2jlq_A Serine protease subunit 40.3 22 0.00075 39.6 4.7 53 457-515 190-242 (451)
235 1znw_A Guanylate kinase, GMP k 40.2 11 0.00036 37.1 1.9 20 412-431 16-35 (207)
236 1iy2_A ATP-dependent metallopr 39.8 8.1 0.00028 39.9 1.0 51 378-431 36-88 (278)
237 3kta_A Chromosome segregation 39.3 10 0.00035 36.1 1.5 22 418-441 28-49 (182)
238 1qhx_A CPT, protein (chloramph 39.2 7.3 0.00025 36.9 0.4 17 416-432 3-19 (178)
239 1s96_A Guanylate kinase, GMP k 39.1 11 0.00038 37.8 1.9 19 413-431 13-31 (219)
240 3lnc_A Guanylate kinase, GMP k 39.0 11 0.00037 37.7 1.7 18 414-431 25-42 (231)
241 1kag_A SKI, shikimate kinase I 38.8 11 0.00038 35.5 1.7 16 416-431 4-19 (173)
242 2r44_A Uncharacterized protein 38.8 8.5 0.00029 40.8 0.9 21 412-432 42-62 (331)
243 2db3_A ATP-dependent RNA helic 38.7 18 0.00063 39.9 3.7 69 458-540 303-374 (434)
244 2j0s_A ATP-dependent RNA helic 38.3 32 0.0011 37.1 5.6 72 630-705 104-185 (410)
245 4b4t_L 26S protease subunit RP 38.1 8.9 0.00031 42.9 1.0 51 379-432 178-231 (437)
246 1f2t_A RAD50 ABC-ATPase; DNA d 38.0 12 0.00043 34.9 1.9 23 418-442 25-47 (149)
247 3exa_A TRNA delta(2)-isopenten 38.0 8.5 0.00029 41.2 0.8 16 417-432 4-19 (322)
248 3a8t_A Adenylate isopentenyltr 37.9 8.5 0.00029 41.5 0.8 16 417-432 41-56 (339)
249 2v9p_A Replication protein E1; 37.6 13 0.00043 39.6 2.0 27 414-442 124-150 (305)
250 1kht_A Adenylate kinase; phosp 37.6 13 0.00046 35.3 2.1 17 416-432 3-19 (192)
251 3trf_A Shikimate kinase, SK; a 37.5 13 0.00044 35.4 2.0 17 416-432 5-21 (185)
252 4b4t_H 26S protease regulatory 37.5 9.6 0.00033 42.9 1.1 52 378-432 205-259 (467)
253 1bg2_A Kinesin; motor protein, 37.5 11 0.00037 40.5 1.5 24 409-432 69-94 (325)
254 4b4t_J 26S protease regulatory 37.2 12 0.0004 41.4 1.8 52 378-432 144-198 (405)
255 3nbx_X ATPase RAVA; AAA+ ATPas 37.0 10 0.00035 43.2 1.3 23 409-431 34-56 (500)
256 2xau_A PRE-mRNA-splicing facto 36.5 30 0.001 41.5 5.4 59 457-515 305-377 (773)
257 3b6u_A Kinesin-like protein KI 36.4 12 0.00041 40.9 1.6 24 409-432 93-118 (372)
258 4eun_A Thermoresistant glucoki 36.2 14 0.00048 36.0 2.0 17 415-431 28-44 (200)
259 1hv8_A Putative ATP-dependent 36.0 39 0.0013 35.4 5.7 71 630-705 73-153 (367)
260 2r62_A Cell division protease 36.0 7.7 0.00026 39.6 0.0 51 379-432 8-60 (268)
261 3asz_A Uridine kinase; cytidin 36.0 15 0.0005 36.0 2.1 24 416-441 6-29 (211)
262 3dc4_A Kinesin-like protein NO 35.9 11 0.00036 40.9 1.1 24 409-432 86-111 (344)
263 4a2p_A RIG-I, retinoic acid in 35.6 25 0.00087 39.6 4.4 71 631-705 55-136 (556)
264 1wp9_A ATP-dependent RNA helic 35.6 25 0.00086 38.3 4.2 71 630-705 51-131 (494)
265 1f9v_A Kinesin-like protein KA 35.6 13 0.00043 40.3 1.7 24 409-432 76-101 (347)
266 2y65_A Kinesin, kinesin heavy 35.5 12 0.00041 40.8 1.5 24 409-432 76-101 (365)
267 3t0q_A AGR253WP; kinesin, alph 35.5 12 0.00041 40.6 1.4 24 409-432 77-102 (349)
268 3hws_A ATP-dependent CLP prote 35.4 12 0.00039 40.5 1.3 18 415-432 50-67 (363)
269 3b6e_A Interferon-induced heli 35.4 23 0.00077 34.3 3.4 56 630-689 81-140 (216)
270 1goj_A Kinesin, kinesin heavy 35.4 12 0.00042 40.6 1.5 23 410-432 73-97 (355)
271 3foz_A TRNA delta(2)-isopenten 35.4 10 0.00034 40.5 0.8 15 418-432 12-26 (316)
272 3eiq_A Eukaryotic initiation f 35.4 46 0.0016 35.7 6.2 73 630-705 107-189 (414)
273 1ojl_A Transcriptional regulat 35.3 8.6 0.00029 40.6 0.3 19 414-432 23-41 (304)
274 1xwi_A SKD1 protein; VPS4B, AA 35.3 7 0.00024 41.7 -0.4 52 378-432 8-61 (322)
275 2vvg_A Kinesin-2; motor protei 35.2 12 0.00042 40.5 1.5 24 409-432 81-106 (350)
276 2nr8_A Kinesin-like protein KI 35.2 13 0.00044 40.5 1.6 24 409-432 95-120 (358)
277 1knq_A Gluconate kinase; ALFA/ 35.2 14 0.0005 34.8 1.9 17 416-432 8-24 (175)
278 1t5c_A CENP-E protein, centrom 35.1 13 0.00044 40.3 1.6 24 409-432 69-94 (349)
279 1ofh_A ATP-dependent HSL prote 35.1 15 0.00052 37.9 2.2 18 415-432 49-66 (310)
280 4b4t_K 26S protease regulatory 35.1 11 0.00037 42.0 1.1 51 379-432 169-222 (428)
281 3lw7_A Adenylate kinase relate 35.1 9.5 0.00032 35.5 0.5 15 418-432 3-17 (179)
282 3gbj_A KIF13B protein; kinesin 35.1 13 0.00044 40.4 1.6 24 409-432 84-109 (354)
283 3lre_A Kinesin-like protein KI 35.0 13 0.00043 40.5 1.5 24 409-432 97-122 (355)
284 2ze6_A Isopentenyl transferase 34.9 9.6 0.00033 39.1 0.5 15 418-432 3-17 (253)
285 1x88_A Kinesin-like protein KI 34.8 12 0.00042 40.6 1.4 24 409-432 80-105 (359)
286 2i3b_A HCR-ntpase, human cance 34.8 17 0.00057 35.6 2.3 42 532-576 103-146 (189)
287 4a14_A Kinesin, kinesin-like p 34.7 12 0.00042 40.3 1.4 24 409-432 75-100 (344)
288 2h58_A Kinesin-like protein KI 34.7 12 0.00042 40.1 1.4 24 409-432 72-97 (330)
289 1v8k_A Kinesin-like protein KI 34.7 12 0.00042 41.4 1.4 24 409-432 146-171 (410)
290 1lv7_A FTSH; alpha/beta domain 34.6 14 0.00049 37.4 1.8 17 416-432 45-61 (257)
291 1ye8_A Protein THEP1, hypothet 34.2 15 0.00052 35.4 1.9 23 418-442 2-24 (178)
292 2zfi_A Kinesin-like protein KI 34.0 13 0.00045 40.5 1.5 24 409-432 81-106 (366)
293 3cob_A Kinesin heavy chain-lik 33.9 12 0.00041 40.9 1.2 24 409-432 71-96 (369)
294 3bfn_A Kinesin-like protein KI 33.8 13 0.00045 40.8 1.4 24 409-432 90-115 (388)
295 3sqw_A ATP-dependent RNA helic 33.8 38 0.0013 38.9 5.5 72 631-705 95-181 (579)
296 2ius_A DNA translocase FTSK; n 33.6 20 0.00069 40.9 3.0 18 415-432 166-183 (512)
297 4gp7_A Metallophosphoesterase; 33.5 9.5 0.00032 36.4 0.2 18 415-432 8-25 (171)
298 4etp_A Kinesin-like protein KA 33.4 12 0.00043 41.3 1.2 24 409-432 132-157 (403)
299 3tif_A Uncharacterized ABC tra 33.4 13 0.00043 37.8 1.1 18 414-431 29-46 (235)
300 3nwj_A ATSK2; P loop, shikimat 33.3 19 0.00065 36.9 2.5 21 412-432 44-64 (250)
301 2qmh_A HPR kinase/phosphorylas 33.1 12 0.00042 37.2 1.0 18 415-432 33-50 (205)
302 3uie_A Adenylyl-sulfate kinase 33.1 16 0.00054 35.6 1.8 26 415-442 24-49 (200)
303 3b9p_A CG5977-PA, isoform A; A 32.9 15 0.0005 38.1 1.6 17 416-432 54-70 (297)
304 4a2q_A RIG-I, retinoic acid in 32.8 30 0.001 41.6 4.6 71 631-705 296-377 (797)
305 3eph_A TRNA isopentenyltransfe 32.8 15 0.00051 40.6 1.7 15 418-432 4-18 (409)
306 2wbe_C Bipolar kinesin KRP-130 32.8 13 0.00045 40.6 1.2 24 409-432 92-117 (373)
307 2qp9_X Vacuolar protein sortin 32.6 14 0.00049 39.8 1.5 51 378-432 47-100 (355)
308 3uk6_A RUVB-like 2; hexameric 32.5 17 0.00059 38.8 2.1 17 416-432 70-86 (368)
309 3u06_A Protein claret segregat 32.5 13 0.00045 41.2 1.2 24 409-432 130-155 (412)
310 3auy_A DNA double-strand break 32.4 17 0.00058 39.4 2.0 23 416-440 25-47 (371)
311 2v6i_A RNA helicase; membrane, 32.4 22 0.00074 39.5 2.9 53 457-515 173-225 (431)
312 2heh_A KIF2C protein; kinesin, 32.3 13 0.00046 40.7 1.2 24 409-432 126-151 (387)
313 2qz4_A Paraplegin; AAA+, SPG7, 32.3 17 0.00058 36.6 1.9 17 416-432 39-55 (262)
314 3kb2_A SPBC2 prophage-derived 32.2 18 0.0006 33.7 1.9 15 418-432 3-17 (173)
315 1nlf_A Regulatory protein REPA 32.2 36 0.0012 34.9 4.5 21 412-432 26-46 (279)
316 1y63_A LMAJ004144AAA protein; 32.1 11 0.00038 36.2 0.5 18 415-432 9-26 (184)
317 2rep_A Kinesin-like protein KI 32.0 15 0.0005 40.3 1.4 24 409-432 107-132 (376)
318 3gk5_A Uncharacterized rhodane 31.9 17 0.00057 31.8 1.6 37 630-666 54-90 (108)
319 2z83_A Helicase/nucleoside tri 31.9 44 0.0015 37.2 5.5 53 457-515 192-244 (459)
320 3i5x_A ATP-dependent RNA helic 31.7 43 0.0015 38.0 5.5 72 631-705 146-232 (563)
321 3cmw_A Protein RECA, recombina 31.7 12 0.00042 48.7 0.9 93 416-548 1431-1523(1706)
322 1njg_A DNA polymerase III subu 31.6 21 0.00071 34.8 2.4 15 418-432 47-61 (250)
323 1m7g_A Adenylylsulfate kinase; 31.3 23 0.00077 34.8 2.6 28 404-432 14-41 (211)
324 3bgw_A DNAB-like replicative h 31.3 26 0.0009 39.1 3.4 51 414-476 195-245 (444)
325 4b4t_I 26S protease regulatory 31.2 14 0.00048 41.1 1.2 52 378-432 178-232 (437)
326 1rj9_A FTSY, signal recognitio 31.2 19 0.00066 38.0 2.2 26 416-443 102-127 (304)
327 3b9q_A Chloroplast SRP recepto 30.9 18 0.00062 38.2 1.9 27 415-443 99-125 (302)
328 2owm_A Nckin3-434, related to 30.4 16 0.00055 40.9 1.4 24 409-432 128-153 (443)
329 1hqc_A RUVB; extended AAA-ATPa 30.3 22 0.00074 37.2 2.4 17 416-432 38-54 (324)
330 3bh0_A DNAB-like replicative h 30.1 32 0.0011 36.4 3.7 53 414-478 66-118 (315)
331 1nij_A Hypothetical protein YJ 30.1 32 0.0011 36.4 3.7 14 418-431 6-19 (318)
332 1wv9_A Rhodanese homolog TT165 29.9 17 0.00059 30.7 1.3 35 632-666 54-88 (94)
333 4a74_A DNA repair and recombin 29.8 15 0.00052 36.1 1.0 18 415-432 24-41 (231)
334 1gku_B Reverse gyrase, TOP-RG; 29.8 23 0.0008 44.1 2.9 74 630-705 98-181 (1054)
335 3qks_A DNA double-strand break 29.7 20 0.00069 35.3 1.9 25 417-443 24-48 (203)
336 2iut_A DNA translocase FTSK; n 29.5 26 0.00088 40.5 3.0 26 416-442 214-239 (574)
337 2cbz_A Multidrug resistance-as 29.5 16 0.00055 37.0 1.1 18 414-431 29-46 (237)
338 3cm0_A Adenylate kinase; ATP-b 29.5 18 0.00061 34.4 1.4 18 415-432 3-20 (186)
339 1htw_A HI0065; nucleotide-bind 29.4 17 0.00057 34.5 1.2 27 414-442 31-57 (158)
340 3t15_A Ribulose bisphosphate c 29.3 21 0.00071 37.3 2.0 16 417-432 37-52 (293)
341 2px0_A Flagellar biosynthesis 29.1 35 0.0012 35.8 3.8 18 415-432 104-121 (296)
342 1sxj_D Activator 1 41 kDa subu 29.0 28 0.00096 36.7 3.0 37 534-571 133-169 (353)
343 2r2a_A Uncharacterized protein 28.9 25 0.00087 34.6 2.5 36 537-572 90-130 (199)
344 1in4_A RUVB, holliday junction 28.9 21 0.00072 38.0 2.0 15 417-431 52-66 (334)
345 3crm_A TRNA delta(2)-isopenten 28.7 15 0.00052 39.3 0.8 15 418-432 7-21 (323)
346 2og2_A Putative signal recogni 28.7 27 0.00091 37.9 2.8 27 415-443 156-182 (359)
347 4fcw_A Chaperone protein CLPB; 28.7 23 0.0008 36.6 2.3 16 417-432 48-63 (311)
348 2f1r_A Molybdopterin-guanine d 28.6 13 0.00045 35.8 0.3 24 418-443 4-27 (171)
349 2z43_A DNA repair and recombin 28.6 51 0.0017 34.8 5.0 18 415-432 106-123 (324)
350 3qf7_A RAD50; ABC-ATPase, ATPa 28.6 21 0.0007 38.8 1.9 15 418-432 25-39 (365)
351 2bdt_A BH3686; alpha-beta prot 28.4 15 0.00051 35.2 0.7 15 417-431 3-17 (189)
352 3d3q_A TRNA delta(2)-isopenten 28.3 16 0.00053 39.5 0.8 15 418-432 9-23 (340)
353 2pcj_A ABC transporter, lipopr 28.2 18 0.00061 36.3 1.2 18 414-431 28-45 (224)
354 1sgw_A Putative ABC transporte 28.0 19 0.00064 36.0 1.3 18 414-431 33-50 (214)
355 1ry6_A Internal kinesin; kines 27.8 17 0.00057 39.6 1.0 18 415-432 82-101 (360)
356 3t61_A Gluconokinase; PSI-biol 27.7 23 0.00077 34.4 1.8 16 417-432 19-34 (202)
357 3foj_A Uncharacterized protein 27.7 13 0.00044 32.0 0.0 37 630-666 55-91 (100)
358 3gfo_A Cobalt import ATP-bindi 27.7 18 0.0006 37.8 1.1 18 414-431 32-49 (275)
359 1ly1_A Polynucleotide kinase; 27.6 15 0.00052 34.5 0.5 15 418-432 4-18 (181)
360 3iwh_A Rhodanese-like domain p 27.6 13 0.00044 32.6 -0.0 36 630-665 55-90 (103)
361 2ghi_A Transport protein; mult 27.5 18 0.00062 37.2 1.1 18 414-431 44-61 (260)
362 1mv5_A LMRA, multidrug resista 27.4 17 0.00058 36.9 0.9 18 414-431 26-43 (243)
363 3e70_C DPA, signal recognition 27.4 30 0.001 37.0 2.8 27 415-443 128-154 (328)
364 2pze_A Cystic fibrosis transme 27.2 18 0.00062 36.4 1.1 18 414-431 32-49 (229)
365 2c95_A Adenylate kinase 1; tra 27.2 28 0.00095 33.2 2.4 18 415-432 8-25 (196)
366 1nks_A Adenylate kinase; therm 27.0 26 0.00089 33.2 2.1 15 418-432 3-17 (194)
367 2v54_A DTMP kinase, thymidylat 27.0 22 0.00074 34.3 1.6 18 415-432 3-20 (204)
368 2pez_A Bifunctional 3'-phospho 27.0 24 0.00081 33.4 1.8 18 415-432 4-21 (179)
369 1cke_A CK, MSSA, protein (cyti 26.9 24 0.00081 34.7 1.9 16 417-432 6-21 (227)
370 3eme_A Rhodanese-like domain p 26.9 13 0.00043 32.2 -0.2 37 630-666 55-91 (103)
371 2ff7_A Alpha-hemolysin translo 26.9 18 0.00063 36.8 1.1 18 414-431 33-50 (247)
372 2qt1_A Nicotinamide riboside k 26.9 13 0.00046 36.2 0.0 21 411-431 16-36 (207)
373 1g8p_A Magnesium-chelatase 38 26.8 22 0.00077 37.5 1.8 17 416-432 45-61 (350)
374 2rhm_A Putative kinase; P-loop 26.7 24 0.00083 33.5 1.8 17 416-432 5-21 (193)
375 1cr0_A DNA primase/helicase; R 26.6 26 0.0009 36.3 2.2 19 414-432 33-51 (296)
376 2cvh_A DNA repair and recombin 26.4 17 0.00057 35.5 0.6 18 415-432 19-36 (220)
377 2jaq_A Deoxyguanosine kinase; 26.4 25 0.00084 33.7 1.9 14 418-431 2-15 (205)
378 1g6h_A High-affinity branched- 26.4 19 0.00065 36.9 1.1 18 414-431 31-48 (257)
379 3aez_A Pantothenate kinase; tr 26.4 24 0.00083 37.3 1.9 27 415-443 89-115 (312)
380 2plr_A DTMP kinase, probable t 26.4 24 0.00083 34.0 1.8 18 415-432 3-20 (213)
381 4a2w_A RIG-I, retinoic acid in 26.3 42 0.0014 41.2 4.3 71 631-705 296-377 (936)
382 1um8_A ATP-dependent CLP prote 26.3 22 0.00077 38.3 1.7 18 415-432 71-88 (376)
383 3hr8_A Protein RECA; alpha and 26.3 32 0.0011 37.3 2.9 26 415-441 60-85 (356)
384 4g1u_C Hemin import ATP-bindin 26.2 19 0.00066 37.2 1.0 18 414-431 35-52 (266)
385 2zan_A Vacuolar protein sortin 25.9 20 0.00067 40.0 1.1 52 378-432 130-183 (444)
386 1b0u_A Histidine permease; ABC 25.9 20 0.00069 36.9 1.1 18 414-431 30-47 (262)
387 2bwj_A Adenylate kinase 5; pho 25.7 30 0.001 33.1 2.3 17 416-432 12-28 (199)
388 2yhs_A FTSY, cell division pro 25.6 31 0.0011 39.1 2.7 26 416-443 293-318 (503)
389 1ji0_A ABC transporter; ATP bi 25.5 20 0.00069 36.3 1.1 18 414-431 30-47 (240)
390 2zr9_A Protein RECA, recombina 25.3 35 0.0012 36.8 2.9 26 415-441 60-85 (349)
391 3rc3_A ATP-dependent RNA helic 25.2 44 0.0015 39.5 4.0 73 459-546 324-401 (677)
392 1odf_A YGR205W, hypothetical 3 25.1 27 0.00093 36.6 2.0 24 418-443 33-56 (290)
393 3hix_A ALR3790 protein; rhodan 25.1 19 0.00066 31.3 0.7 37 630-666 51-88 (106)
394 3g5j_A Putative ATP/GTP bindin 25.1 30 0.001 30.8 2.1 36 632-667 90-126 (134)
395 2yvu_A Probable adenylyl-sulfa 25.0 28 0.00096 33.1 2.0 18 415-432 12-29 (186)
396 1tev_A UMP-CMP kinase; ploop, 24.9 17 0.0006 34.5 0.4 17 416-432 3-19 (196)
397 2zu0_C Probable ATP-dependent 24.8 22 0.00074 36.8 1.1 18 414-431 44-61 (267)
398 3d8b_A Fidgetin-like protein 1 24.7 24 0.00083 37.9 1.6 17 416-432 117-133 (357)
399 1vpl_A ABC transporter, ATP-bi 24.7 22 0.00075 36.5 1.1 18 414-431 39-56 (256)
400 2olj_A Amino acid ABC transpor 24.6 22 0.00075 36.7 1.1 18 414-431 48-65 (263)
401 2c9o_A RUVB-like 1; hexameric 24.5 27 0.00093 38.9 2.0 17 416-432 63-79 (456)
402 2ixe_A Antigen peptide transpo 24.4 22 0.00076 36.8 1.1 18 414-431 43-60 (271)
403 2pv9_C Proteinase-activated re 24.2 16 0.00054 23.6 -0.1 8 30-37 7-14 (26)
404 2yz2_A Putative ABC transporte 24.2 23 0.00077 36.6 1.1 18 414-431 31-48 (266)
405 2d2e_A SUFC protein; ABC-ATPas 24.2 22 0.00076 36.2 1.1 18 414-431 27-44 (250)
406 2qi9_C Vitamin B12 import ATP- 24.0 23 0.00077 36.3 1.1 18 414-431 24-41 (249)
407 2nq2_C Hypothetical ABC transp 24.0 23 0.00078 36.3 1.1 18 414-431 29-46 (253)
408 1vma_A Cell division protein F 23.9 36 0.0012 35.9 2.7 17 416-432 104-120 (306)
409 2ihy_A ABC transporter, ATP-bi 23.7 23 0.00079 36.9 1.1 18 414-431 45-62 (279)
410 3tqc_A Pantothenate kinase; bi 23.6 38 0.0013 36.1 2.8 23 419-443 95-117 (321)
411 1gtv_A TMK, thymidylate kinase 23.5 21 0.00073 34.7 0.7 13 419-431 3-15 (214)
412 3nh6_A ATP-binding cassette SU 23.2 16 0.00056 38.7 -0.2 18 414-431 78-95 (306)
413 1u94_A RECA protein, recombina 23.1 39 0.0013 36.5 2.8 26 415-441 62-87 (356)
414 1n0w_A DNA repair protein RAD5 23.1 20 0.00068 35.6 0.4 18 415-432 23-40 (243)
415 1zd8_A GTP:AMP phosphotransfer 23.0 22 0.00077 35.2 0.8 17 416-432 7-23 (227)
416 3vfd_A Spastin; ATPase, microt 22.9 19 0.00066 39.1 0.3 17 416-432 148-164 (389)
417 2wwf_A Thymidilate kinase, put 22.9 35 0.0012 32.9 2.2 18 415-432 9-26 (212)
418 1xp8_A RECA protein, recombina 22.7 42 0.0014 36.4 2.9 27 415-442 73-99 (366)
419 1gmx_A GLPE protein; transfera 22.7 23 0.0008 30.7 0.8 37 630-666 57-94 (108)
420 1rz3_A Hypothetical protein rb 22.6 34 0.0012 33.3 2.0 17 416-432 22-38 (201)
421 1qf9_A UMP/CMP kinase, protein 22.4 21 0.00072 33.8 0.4 15 418-432 8-22 (194)
422 1xjc_A MOBB protein homolog; s 22.3 36 0.0012 32.7 2.1 15 418-432 6-20 (169)
423 2cdn_A Adenylate kinase; phosp 22.3 32 0.0011 33.2 1.8 17 416-432 20-36 (201)
424 3flh_A Uncharacterized protein 22.3 34 0.0012 30.6 1.8 37 630-666 70-108 (124)
425 4gl2_A Interferon-induced heli 22.2 13 0.00046 43.6 -1.3 71 631-705 56-142 (699)
426 2jeo_A Uridine-cytidine kinase 22.1 33 0.0011 34.6 1.8 17 416-432 25-41 (245)
427 1gvn_B Zeta; postsegregational 22.0 24 0.00082 36.8 0.8 17 416-432 33-49 (287)
428 1tue_A Replication protein E1; 22.0 26 0.00089 35.1 1.0 16 417-432 59-74 (212)
429 1zak_A Adenylate kinase; ATP:A 21.8 40 0.0014 33.1 2.4 17 416-432 5-21 (222)
430 1zuh_A Shikimate kinase; alpha 21.8 21 0.0007 33.4 0.2 16 417-432 8-23 (168)
431 1tq1_A AT5G66040, senescence-a 21.6 26 0.00088 31.7 0.8 37 630-666 81-118 (129)
432 1e6c_A Shikimate kinase; phosp 21.6 37 0.0013 31.5 2.0 16 417-432 3-18 (173)
433 3fb4_A Adenylate kinase; psych 21.5 21 0.00073 34.8 0.3 15 418-432 2-16 (216)
434 1u0j_A DNA replication protein 21.5 31 0.0011 35.8 1.5 42 388-432 73-120 (267)
435 3f9v_A Minichromosome maintena 21.5 31 0.0011 40.0 1.7 14 418-431 329-342 (595)
436 1ypw_A Transitional endoplasmi 21.3 29 0.001 41.9 1.4 17 415-431 237-253 (806)
437 2bbs_A Cystic fibrosis transme 21.3 29 0.001 36.3 1.3 18 414-431 62-79 (290)
438 1via_A Shikimate kinase; struc 21.2 39 0.0013 31.8 2.1 15 418-432 6-20 (175)
439 1v5w_A DMC1, meiotic recombina 21.2 56 0.0019 34.8 3.6 18 415-432 121-138 (343)
440 1e69_A Chromosome segregation 21.1 32 0.0011 36.4 1.6 20 418-439 26-45 (322)
441 1aky_A Adenylate kinase; ATP:A 21.0 37 0.0013 33.3 2.0 17 416-432 4-20 (220)
442 2z0h_A DTMP kinase, thymidylat 21.0 37 0.0013 32.3 1.9 14 419-432 3-16 (197)
443 2bbw_A Adenylate kinase 4, AK4 20.9 29 0.001 34.8 1.2 16 416-431 27-42 (246)
444 1nn5_A Similar to deoxythymidy 20.8 43 0.0015 32.4 2.3 18 415-432 8-25 (215)
445 2hhg_A Hypothetical protein RP 20.8 28 0.00094 31.7 0.9 37 630-666 85-122 (139)
446 2iyv_A Shikimate kinase, SK; t 20.8 25 0.00086 33.3 0.6 16 417-432 3-18 (184)
447 4hfx_A Transcription elongatio 20.7 64 0.0022 28.1 3.1 54 13-81 43-96 (97)
448 1sq5_A Pantothenate kinase; P- 20.6 38 0.0013 35.6 2.0 25 416-442 80-104 (308)
449 3pxg_A Negative regulator of g 20.6 49 0.0017 37.0 3.1 17 416-432 201-217 (468)
450 3o8b_A HCV NS3 protease/helica 20.5 93 0.0032 36.6 5.5 50 457-515 398-447 (666)
451 1np6_A Molybdopterin-guanine d 20.4 40 0.0014 32.4 2.0 14 418-431 8-21 (174)
452 2ca6_A RAN GTPase-activating p 20.3 27 0.00092 37.5 0.8 11 98-108 174-184 (386)
453 2r6a_A DNAB helicase, replicat 20.2 45 0.0015 37.2 2.6 27 414-441 201-227 (454)
454 3dl0_A Adenylate kinase; phosp 20.2 24 0.00081 34.6 0.3 15 418-432 2-16 (216)
455 2vli_A Antibiotic resistance p 20.2 25 0.00087 33.1 0.5 17 416-432 5-21 (183)
456 1ukz_A Uridylate kinase; trans 20.1 24 0.00082 34.1 0.3 15 418-432 17-31 (203)
457 4h1g_A Maltose binding protein 20.1 30 0.001 41.1 1.2 24 409-432 454-479 (715)
458 1ypw_A Transitional endoplasmi 20.0 28 0.00096 42.0 0.9 17 415-431 510-526 (806)
459 2q6t_A DNAB replication FORK h 20.0 46 0.0016 36.9 2.7 27 415-442 199-225 (444)
460 1zu4_A FTSY; GTPase, signal re 20.0 49 0.0017 35.1 2.7 18 415-432 104-121 (320)
No 1
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.4e-58 Score=544.60 Aligned_cols=449 Identities=31% Similarity=0.470 Sum_probs=344.1
Q ss_pred CCchhHhhhcccceeeeeehhhhhhhhhh--cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEecc
Q 003178 386 ISPLTIKALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463 (842)
Q Consensus 386 l~~~l~~~L~~~g~~~~t~iQ~~aI~~il--~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~P 463 (842)
|++.++++|..+||..|+|+|.++|+.++ .++|++++||||||||++|++|+++.+....... ..++++|||+|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~----~~~~~~lvl~P 103 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS----QYMVKAVIVAP 103 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS----TTSCCEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccc----cCCCeEEEEcc
Confidence 99999999999999999999999999999 7899999999999999999999999988754321 22457999999
Q ss_pred chhHHHHHHHHHHHhhhc---CCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeee
Q 003178 464 TRELASQIAAEAIALLKN---HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVL 540 (842)
Q Consensus 464 TReLA~Qi~~~l~~l~~~---~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVl 540 (842)
|++||.|+++++.+++.. ...+.+..++|+.........+...+++|+|+||++|++++.... ...+..+++|||
T Consensus 104 tr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~--~~~~~~~~~lVi 181 (579)
T 3sqw_A 104 TRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NKFFRFVDYKVL 181 (579)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HHHCTTCCEEEE
T ss_pred hHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcc--ccccccCCEEEE
Confidence 999999999999998743 234668888898877666555555568999999999999886531 123578999999
Q ss_pred cccccccccccccchhhhhhcccc-------cccceeecccCcchhhcc-----cc--ceeeeecccccccccccccccc
Q 003178 541 DEADHLLDLGFRKDVENIVDCLPR-------RRQSLLFSATMPKELVLK-----RE--HTYIDTVGLGSVETPVKIKQSC 606 (842)
Q Consensus 541 DEAh~lld~gf~~~i~~Il~~l~~-------~~q~il~SATl~~~l~~~-----~~--~~~i~~v~~~~~~~~~~l~~~~ 606 (842)
||||+|+++||...+..|+..++. .+|+++||||+++.+... .. ...+.............+.+.+
T Consensus 182 DEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 261 (579)
T 3sqw_A 182 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 261 (579)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred EChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEE
Confidence 999999999999999999887654 569999999999864211 11 1111111111222233344444
Q ss_pred cccCc-hh-hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH---hhhHHHHhhcCcchhhhhhhHHHhhcc
Q 003178 607 LVAPH-EL-HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM---KMNVREMYSRKPQLYRDRISEEFRASK 681 (842)
Q Consensus 607 ~~~~~-~~-k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~---~~~v~~lhg~~~~~~R~~v~~~F~~g~ 681 (842)
..... .. ....+..+........++.++||||+|+..++.++..|+.. ++.+..+||+|++.+|..+++.|++|+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~ 341 (579)
T 3sqw_A 262 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE 341 (579)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS
T ss_pred EEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCC
Confidence 43332 22 22333333322222245679999999999999999999987 888999999999999999999999999
Q ss_pred eEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCC---CCCCCCCCCC
Q 003178 682 RLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD---LPLDKLQLPH 758 (842)
Q Consensus 682 ~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~---~~l~~~~~~~ 758 (842)
..|||||+++++|||+|+|++||+|++|.++..|+||+|||||.|+.|.|++|+++.|..+++.|++ .++.......
T Consensus 342 ~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ 421 (579)
T 3sqw_A 342 SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYE 421 (579)
T ss_dssp SEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEEC
T ss_pred CeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999888877743 3333333223
Q ss_pred CChHHHHHHHHhhhccchhhHHHHHHHHHhhccchhhhcc-chhh-HHHHHHHHHHhhcCCC-CCchhHHHHHHhCCCCC
Q 003178 759 LNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGR-DKTT-LVELANKFAQSIGLQR-PPPLFRKTALKMGLKDI 835 (842)
Q Consensus 759 ~~~~~~~~i~~~l~~~~~~~~~~a~~s~l~yy~~~~~~~~-~~~~-~~~l~~~la~s~gL~~-~P~v~~~~~~klgl~~~ 835 (842)
........+...+...... ...++.+|+.||.......+ +..+ +.++++.++..++.+. .|++.+.++.+|||++.
T Consensus 422 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~ 500 (579)
T 3sqw_A 422 PSEEIKSEVLEAVTEEPED-ISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRS 500 (579)
T ss_dssp CCHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCTTCCEEECHHHHHHHTCTTC
T ss_pred ccHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHhCCCCCCCccchhHHHhcCCCCC
Confidence 3444444554555443333 34567899999988753322 3333 4667777777777775 45688999999999999
Q ss_pred CCcccc
Q 003178 836 PGIRLR 841 (842)
Q Consensus 836 pg~~i~ 841 (842)
||+++.
T Consensus 501 ~~~~~~ 506 (579)
T 3sqw_A 501 PIGKAM 506 (579)
T ss_dssp HHHHHH
T ss_pred CCceee
Confidence 998653
No 2
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=7.5e-57 Score=530.80 Aligned_cols=447 Identities=32% Similarity=0.469 Sum_probs=337.2
Q ss_pred CCCchhHhhhcccceeeeeehhhhhhhhhh--cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEec
Q 003178 385 GISPLTIKALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILC 462 (842)
Q Consensus 385 ~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il--~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~ 462 (842)
.+++.++++|..+||..|+|+|.++|+.++ .++|++++||||||||++|++|+++.+....... ..++++|||+
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~----~~~~~~lil~ 153 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS----QYMVKAVIVA 153 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS----TTSCCEEEEC
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccc----cCCeeEEEEc
Confidence 399999999999999999999999999999 6789999999999999999999999998764321 2245799999
Q ss_pred cchhHHHHHHHHHHHhhhcC---CceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeee
Q 003178 463 PTRELASQIAAEAIALLKNH---DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (842)
Q Consensus 463 PTReLA~Qi~~~l~~l~~~~---~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lV 539 (842)
||++||.|+++++.+++... ..+.+..++|+.........+...+++|+|+||++|++++.... ...+.++++||
T Consensus 154 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~~lV 231 (563)
T 3i5x_A 154 PTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NKFFRFVDYKV 231 (563)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HHHCTTCCEEE
T ss_pred CcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc--ccccccceEEE
Confidence 99999999999999986532 34567888898876655555545568999999999999886531 12356799999
Q ss_pred ecccccccccccccchhhhhhcccc-------cccceeecccCcchhhcc-----c--cceeeeeccccccccccccccc
Q 003178 540 LDEADHLLDLGFRKDVENIVDCLPR-------RRQSLLFSATMPKELVLK-----R--EHTYIDTVGLGSVETPVKIKQS 605 (842)
Q Consensus 540 lDEAh~lld~gf~~~i~~Il~~l~~-------~~q~il~SATl~~~l~~~-----~--~~~~i~~v~~~~~~~~~~l~~~ 605 (842)
|||||++++++|...+..|+..++. .+|+++||||+++.+... . ....+.............+.+.
T Consensus 232 iDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (563)
T 3i5x_A 232 LDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 311 (563)
T ss_dssp EETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEE
T ss_pred EeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceE
Confidence 9999999999999999998877653 568999999999863211 1 1111111111222223334444
Q ss_pred ccccCc-hhhH-HHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH---hhhHHHHhhcCcchhhhhhhHHHhhc
Q 003178 606 CLVAPH-ELHF-QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM---KMNVREMYSRKPQLYRDRISEEFRAS 680 (842)
Q Consensus 606 ~~~~~~-~~k~-~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~---~~~v~~lhg~~~~~~R~~v~~~F~~g 680 (842)
+..... ..+. ..+..+.........+.++||||+|+..++.++..|+.. ++.+..+||+|++.+|..+++.|++|
T Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g 391 (563)
T 3i5x_A 312 VVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD 391 (563)
T ss_dssp EEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC
T ss_pred EEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcC
Confidence 443332 2222 223333222222245679999999999999999999987 88899999999999999999999999
Q ss_pred ceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCC---CCCCCCCCC
Q 003178 681 KRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD---LPLDKLQLP 757 (842)
Q Consensus 681 ~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~---~~l~~~~~~ 757 (842)
+..|||||+++++|||+|+|++||+||+|.++..|+||+|||||.|+.|.|++|+++.|..+++.|++ .++......
T Consensus 392 ~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 471 (563)
T 3i5x_A 392 ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKY 471 (563)
T ss_dssp SSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEE
T ss_pred CCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999888877643 344433322
Q ss_pred CCChHHHHHHHHhhhccchhhHHHHHHHHHhhccchhhhcc-chh-hHHHHHHHHHHhhcCCCC-CchhHHHHHHhCCCC
Q 003178 758 HLNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGR-DKT-TLVELANKFAQSIGLQRP-PPLFRKTALKMGLKD 834 (842)
Q Consensus 758 ~~~~~~~~~i~~~l~~~~~~~~~~a~~s~l~yy~~~~~~~~-~~~-~~~~l~~~la~s~gL~~~-P~v~~~~~~klgl~~ 834 (842)
....+....+...+...... ...+..+|+.||+++...++ +.. .+.+++..|+.-.+.+.. |.+.+.++++|||.+
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~ 550 (563)
T 3i5x_A 472 EPSEEIKSEVLEAVTEEPED-ISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSR 550 (563)
T ss_dssp CCCHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHTHHHHTCCHHHHHHHHHTHHHHHTTCTTCCEEECHHHHHHHTCTT
T ss_pred CccHHHHHHHHHHHhhCHHH-HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHcCCCC
Confidence 33344444444444433333 34567889999988754333 222 244556666655555543 678889999999999
Q ss_pred CCCc
Q 003178 835 IPGI 838 (842)
Q Consensus 835 ~pg~ 838 (842)
.|++
T Consensus 551 ~~~~ 554 (563)
T 3i5x_A 551 SPIG 554 (563)
T ss_dssp CHHH
T ss_pred CccH
Confidence 9875
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-56 Score=511.08 Aligned_cols=348 Identities=28% Similarity=0.477 Sum_probs=296.7
Q ss_pred ccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCce
Q 003178 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (842)
Q Consensus 377 ~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 456 (842)
+..+|+++++++.++++|.++||..|||+|.++||.+++|+|++++|+||||||++|++|+++++...... ....++
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~---~~~~~~ 130 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE---LELGRP 130 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC---CCTTCC
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc---cccCCc
Confidence 34679999999999999999999999999999999999999999999999999999999999999875421 112345
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecce
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~ 536 (842)
++|||+|||+||.|+++++.+++... ++.+.+++||.....+...+. .+++|+|+|||+|++++... ...+.+++
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~---~~~l~~~~ 205 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECIT-RGCHVVIATPGRLLDFVDRT---FITFEDTR 205 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHHT-TCCSEEEECHHHHHHHHHTT---SCCCTTCC
T ss_pred cEEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHhh-cCCCEEEEChHHHHHHHHhC---CcccccCC
Confidence 79999999999999999999987653 688889999987665444443 45899999999999998765 24578899
Q ss_pred eeeecccccccccccccchhhhhhcc--cccccceeecccCcchhhc-----cccceeeeeccccccccccccccccccc
Q 003178 537 MLVLDEADHLLDLGFRKDVENIVDCL--PRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKIKQSCLVA 609 (842)
Q Consensus 537 ~lVlDEAh~lld~gf~~~i~~Il~~l--~~~~q~il~SATl~~~l~~-----~~~~~~i~~v~~~~~~~~~~l~~~~~~~ 609 (842)
+|||||||+|+++||...+..|+..+ ++.+|+++||||++..+.. ......+... ........+.+.+..+
T Consensus 206 ~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~--~~~~~~~~i~~~~~~~ 283 (434)
T 2db3_A 206 FVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIG--IVGGACSDVKQTIYEV 283 (434)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEES--STTCCCTTEEEEEEEC
T ss_pred eEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEec--cccccccccceEEEEe
Confidence 99999999999999999999998875 5789999999999987421 1122222211 1112334566777777
Q ss_pred CchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc
Q 003178 610 PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 689 (842)
Q Consensus 610 ~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd 689 (842)
....+...+..++... ..++||||++++.++.++..|...++.+..+||++++.+|..+++.|++|+..|||||+
T Consensus 284 ~~~~k~~~l~~~l~~~-----~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 358 (434)
T 2db3_A 284 NKYAKRSKLIEILSEQ-----ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS 358 (434)
T ss_dssp CGGGHHHHHHHHHHHC-----CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG
T ss_pred CcHHHHHHHHHHHHhC-----CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch
Confidence 7788888888888764 23599999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccch
Q 003178 690 VSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWE 739 (842)
Q Consensus 690 v~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E 739 (842)
++++|||+|+|++||+||+|.++.+|+||+|||||.|+.|.|++|+++.+
T Consensus 359 v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~ 408 (434)
T 2db3_A 359 VASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEK 408 (434)
T ss_dssp GGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTT
T ss_pred hhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999653
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.1e-53 Score=476.60 Aligned_cols=359 Identities=31% Similarity=0.460 Sum_probs=295.1
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccC---------
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSS--------- 448 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~--------- 448 (842)
..+|+++++++.++++|..+||..|||+|.++|+.++.++|++++||||||||++|++|+++.+.......
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCB
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccc
Confidence 35699999999999999999999999999999999999999999999999999999999999987653210
Q ss_pred -cccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCC
Q 003178 449 -TTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG 527 (842)
Q Consensus 449 -~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~ 527 (842)
......++++||++||++||.|+++.+.++... .++.+..++|+.........+. .+++|+|+||++|.+++...
T Consensus 94 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~-~~~~I~v~Tp~~l~~~l~~~-- 169 (417)
T 2i4i_A 94 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYR-SRVRPCVVYGGADIGQQIRDLE-RGCHLLVATPGRLVDMMERG-- 169 (417)
T ss_dssp TTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTT-SSCCEEEECSSSCHHHHHHHHT-TCCSEEEECHHHHHHHHHTT--
T ss_pred ccccccCCccEEEECCcHHHHHHHHHHHHHHhCc-CCceEEEEECCCCHHHHHHHhh-CCCCEEEEChHHHHHHHHcC--
Confidence 000112357999999999999999999998754 3688889999887655444443 34799999999999988765
Q ss_pred ceEEEecceeeeecccccccccccccchhhhhhc--ccc--cccceeecccCcchhhc-----cccceeeeecccccccc
Q 003178 528 LSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDC--LPR--RRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVET 598 (842)
Q Consensus 528 ~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~--l~~--~~q~il~SATl~~~l~~-----~~~~~~i~~v~~~~~~~ 598 (842)
...+.++++|||||||++++++|...+..++.. ++. ..|+++||||++..+.. ......+... .....
T Consensus 170 -~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 246 (417)
T 2i4i_A 170 -KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG--RVGST 246 (417)
T ss_dssp -SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------C
T ss_pred -CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC--CCCCC
Confidence 245678999999999999999999999998874 333 67999999999876321 1111111111 11223
Q ss_pred cccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHh
Q 003178 599 PVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFR 678 (842)
Q Consensus 599 ~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~ 678 (842)
...+.+.+..+....+...+..++... ..+.++||||+++..++.++..|...++.+..+||++++.+|..+++.|+
T Consensus 247 ~~~i~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 323 (417)
T 2i4i_A 247 SENITQKVVWVEESDKRSFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 323 (417)
T ss_dssp CSSEEEEEEECCGGGHHHHHHHHHHTC---CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCceEEEEEeccHhHHHHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHH
Confidence 345566666777778888888887754 35679999999999999999999999999999999999999999999999
Q ss_pred hcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccC
Q 003178 679 ASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDL 746 (842)
Q Consensus 679 ~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L 746 (842)
+|+..|||||+++++|+|+|++++||+||+|.++..|+||+|||||.|+.|.|++|+++.+..+++.+
T Consensus 324 ~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 391 (417)
T 2i4i_A 324 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 391 (417)
T ss_dssp HTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHH
T ss_pred cCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887665544
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.6e-52 Score=471.67 Aligned_cols=354 Identities=31% Similarity=0.512 Sum_probs=294.4
Q ss_pred ccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCce
Q 003178 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (842)
Q Consensus 377 ~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 456 (842)
...+|+++++++.++++|..+||..|+++|.++++.++.|++++++|+||||||++|++|+++.+.... .+.
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--------~~~ 106 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV--------RET 106 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS--------CSC
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhcc--------CCc
Confidence 345799999999999999999999999999999999999999999999999999999999987663221 223
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecce
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~ 536 (842)
++||++||++||.|+++.+.++.... ++.+..++|+.........+.. +++|+|+||++|.+++... ...+.+++
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~ivv~Tp~~l~~~l~~~---~~~~~~~~ 181 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDY-GQHVVAGTPGRVFDMIRRR---SLRTRAIK 181 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHH-CCSEEEECHHHHHHHHHTT---SSCCTTCC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHhhc-CCCEEEcCHHHHHHHHHhC---CccHhhee
Confidence 69999999999999999999987544 6888888998876554444433 4799999999999988765 24467899
Q ss_pred eeeecccccccccccccchhhhhhcccccccceeecccCcchhhccccceeeeec---ccccccccccccccccccCc-h
Q 003178 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTV---GLGSVETPVKIKQSCLVAPH-E 612 (842)
Q Consensus 537 ~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~i~~v---~~~~~~~~~~l~~~~~~~~~-~ 612 (842)
+|||||||++++++|...+..++..+++..|+++||||++..+.......+.+.. ..........+.+.+..+.. .
T Consensus 182 ~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (410)
T 2j0s_A 182 MLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE 261 (410)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTT
T ss_pred EEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHH
Confidence 9999999999999999999999999999999999999998874321111111111 01111223344555544443 3
Q ss_pred hhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccc
Q 003178 613 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 692 (842)
Q Consensus 613 ~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~a 692 (842)
.+...+..++... ...++||||++++.++.++..|...++.+..+||++++.+|..+++.|++|+..|||||++++
T Consensus 262 ~k~~~l~~~~~~~----~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 337 (410)
T 2j0s_A 262 WKFDTLCDLYDTL----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 337 (410)
T ss_dssp HHHHHHHHHHHHH----TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGS
T ss_pred hHHHHHHHHHHhc----CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhh
Confidence 4777787777764 345999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCC
Q 003178 693 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 747 (842)
Q Consensus 693 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~ 747 (842)
+|+|+|++++||+||+|.++..|+||+||+||.|+.|.|++|+.+.+...++.++
T Consensus 338 ~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~ 392 (410)
T 2j0s_A 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 392 (410)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHH
T ss_pred CcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876665553
No 6
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=8.2e-53 Score=486.85 Aligned_cols=359 Identities=30% Similarity=0.413 Sum_probs=169.2
Q ss_pred cccccccccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcC--cceEEeeccCCCceeeehhHHHHHHHhhccc
Q 003178 370 REEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSS 447 (842)
Q Consensus 370 ~~~~~~~~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g--~dvii~A~TGSGKTlafllPil~~l~~~~~~ 447 (842)
....+.....+|.++++++.++++|.++||..|+++|.++|+.++.+ ++++++||||||||++|++|+++.+....
T Consensus 83 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~-- 160 (479)
T 3fmp_B 83 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-- 160 (479)
T ss_dssp STTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS--
T ss_pred CCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC--
Confidence 34455556778999999999999999999999999999999999987 89999999999999999999987664332
Q ss_pred CcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCC
Q 003178 448 STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG 527 (842)
Q Consensus 448 ~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~ 527 (842)
.++++|||+||++||.|+++.+..+....+++.+...+++....... ...++|+|+||++|++++.+..
T Consensus 161 ------~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~- 229 (479)
T 3fmp_B 161 ------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLK- 229 (479)
T ss_dssp ------CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSC-
T ss_pred ------CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc----cCCCCEEEECchHHHHHHHhcC-
Confidence 23369999999999999999999998877788888888887654322 2347999999999999986642
Q ss_pred ceEEEecceeeeecccccccc-cccccchhhhhhcccccccceeecccCcchhhc-----cccceeeeeccccccccccc
Q 003178 528 LSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVK 601 (842)
Q Consensus 528 ~~~~L~~l~~lVlDEAh~lld-~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~-----~~~~~~i~~v~~~~~~~~~~ 601 (842)
...+.++++|||||||++++ .+|...+..+...+++.+|+++||||++..+.. ......+... ........
T Consensus 230 -~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~ 306 (479)
T 3fmp_B 230 -FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK--REEETLDT 306 (479)
T ss_dssp -CCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------
T ss_pred -CcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecc--ccccCcCC
Confidence 24467999999999999987 688888999999999999999999999987421 1111222111 11223344
Q ss_pred ccccccccCc-hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhc
Q 003178 602 IKQSCLVAPH-ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRAS 680 (842)
Q Consensus 602 l~~~~~~~~~-~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g 680 (842)
+.+.++.+.. ..+...+..++... ...++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|
T Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g 382 (479)
T 3fmp_B 307 IKQYYVLCSSRDEKFQALCNLYGAI----TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 382 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhhc----cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcC
Confidence 5555555443 45555665555433 456899999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccccccCCCCCCcceeEEecCCC------ChHHHHHHhhcCCCCCCCcceeEEeccch-hhhhccCCC
Q 003178 681 KRLILVTSDVSARGMDYPDVTSVVQVGIPP------DREQYIHRLGRTGREGKEGEGVLLLAPWE-EYFLDDLKD 748 (842)
Q Consensus 681 ~~~VLVaTdv~arGlDip~V~~VI~yd~P~------s~~~yiQRiGRaGR~G~~G~~i~ll~~~E-~~~l~~L~~ 748 (842)
+.+|||||+++++|||+|+|++||+||+|. +...|+||+|||||.|+.|.|++|+.+.+ ..+++.+++
T Consensus 383 ~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~ 457 (479)
T 3fmp_B 383 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQE 457 (479)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHH
Confidence 999999999999999999999999999994 66899999999999999999999998765 566666654
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.5e-51 Score=464.97 Aligned_cols=354 Identities=29% Similarity=0.471 Sum_probs=280.8
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
..+|+++++++.+++.|.++||..|+++|.++|+.++.|++++++||||||||++|++|+++.+.... .+.+
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~ 110 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL--------KATQ 110 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS--------CSCC
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC--------Ccee
Confidence 35799999999999999999999999999999999999999999999999999999999998764321 1236
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
+||++||++|+.|+++.+..++... ++.+..++|+.........+....++|+|+||++|++++.... ..+.++++
T Consensus 111 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~~~~ 186 (414)
T 3eiq_A 111 ALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY---LSPKYIKM 186 (414)
T ss_dssp EEEECSSHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS---SCSTTCCE
T ss_pred EEEEeChHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cccccCcE
Confidence 9999999999999999999987654 6788888888877666666655668999999999999887652 34567899
Q ss_pred eeecccccccccccccchhhhhhcccccccceeecccCcchhhcccccee---eeecccccccccccccccccccC-chh
Q 003178 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTY---IDTVGLGSVETPVKIKQSCLVAP-HEL 613 (842)
Q Consensus 538 lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~---i~~v~~~~~~~~~~l~~~~~~~~-~~~ 613 (842)
|||||||++.+++|...+..++..+++..|+++||||++..+.......+ ..............+.+.+.... ...
T Consensus 187 vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (414)
T 3eiq_A 187 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEW 266 (414)
T ss_dssp EEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTT
T ss_pred EEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHh
Confidence 99999999999999999999999999999999999999876421111111 11111111122333444444443 344
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccccc
Q 003178 614 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSAR 693 (842)
Q Consensus 614 k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ar 693 (842)
+...+..++... ...++||||++++.++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 267 ~~~~l~~~~~~~----~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 342 (414)
T 3eiq_A 267 KLDTLCDLYETL----TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 342 (414)
T ss_dssp HHHHHHHHHHSS----CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC-
T ss_pred HHHHHHHHHHhC----CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcccc
Confidence 777777776654 4569999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCC
Q 003178 694 GMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 747 (842)
Q Consensus 694 GlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~ 747 (842)
|||+|++++||+|++|.++..|+||+|||||.|+.|.|++|+++.+...++.+.
T Consensus 343 Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~ 396 (414)
T 3eiq_A 343 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 396 (414)
T ss_dssp -CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHH
T ss_pred CCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998877666554
No 8
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7e-51 Score=455.96 Aligned_cols=353 Identities=29% Similarity=0.435 Sum_probs=295.4
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
...|+++++++.++++|.++||..|+|+|.++++.++.++++++++|||+|||++|++|++..+.... .+.+
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--------~~~~ 78 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVS 78 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT--------TCCC
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC--------CCee
Confidence 45799999999999999999999999999999999999999999999999999999999987653221 2236
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
+||++||++|+.|+++.+.++....+++.+..++|+.........+....++|+|+||++|..++.... ..+.++++
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~---~~~~~~~~ 155 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKH 155 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS---SCCTTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---ccccccCE
Confidence 999999999999999999999887778899999999876655555555557999999999998886652 34678999
Q ss_pred eeecccccccc-cccccchhhhhhcccccccceeecccCcchhhc-----cccceeeeecccccccccccccccccccCc
Q 003178 538 LVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKIKQSCLVAPH 611 (842)
Q Consensus 538 lVlDEAh~lld-~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~-----~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~ 611 (842)
|||||||++.+ .++...+..++..+++..|++++|||++..+.. ......+. +..........+.+.+.....
T Consensus 156 vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (391)
T 1xti_A 156 FILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF-VDDETKLTLHGLQQYYVKLKD 234 (391)
T ss_dssp EEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEE-CCCCCCCCCTTCEEEEEECCG
T ss_pred EEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEE-ecCccccCcccceEEEEEcCc
Confidence 99999999987 478888999999888899999999999886421 11111111 111111223445566666677
Q ss_pred hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccc
Q 003178 612 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 691 (842)
Q Consensus 612 ~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ 691 (842)
..+...+..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+..|||||+++
T Consensus 235 ~~~~~~l~~~l~~~----~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 310 (391)
T 1xti_A 235 NEKNRKLFDLLDVL----EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLF 310 (391)
T ss_dssp GGHHHHHHHHHHHS----CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred hhHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChh
Confidence 77888888877754 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchh-hhhccC
Q 003178 692 ARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE-YFLDDL 746 (842)
Q Consensus 692 arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~-~~l~~L 746 (842)
++|+|+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++.+. .+++.+
T Consensus 311 ~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 366 (391)
T 1xti_A 311 GRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDV 366 (391)
T ss_dssp SSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHH
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999998643 444444
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.5e-50 Score=456.05 Aligned_cols=358 Identities=30% Similarity=0.420 Sum_probs=293.4
Q ss_pred cccccccccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcC--cceEEeeccCCCceeeehhHHHHHHHhhccc
Q 003178 370 REEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSS 447 (842)
Q Consensus 370 ~~~~~~~~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g--~dvii~A~TGSGKTlafllPil~~l~~~~~~ 447 (842)
....++....+|+++++++.++++|.++||..|+++|.++|+.++.+ ++++++||||||||++|++|+++.+....
T Consensus 16 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~-- 93 (412)
T 3fht_A 16 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-- 93 (412)
T ss_dssp CTTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS--
T ss_pred cCCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC--
Confidence 34455666788999999999999999999999999999999999997 99999999999999999999998764432
Q ss_pred CcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCC
Q 003178 448 STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG 527 (842)
Q Consensus 448 ~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~ 527 (842)
.+.++||++||++||.|+++.+.++....+++.+....++....... ...++|+|+||++|.+++....
T Consensus 94 ------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ivv~T~~~l~~~~~~~~- 162 (412)
T 3fht_A 94 ------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLK- 162 (412)
T ss_dssp ------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSC-
T ss_pred ------CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh----cCCCCEEEECchHHHHHHHhcC-
Confidence 22369999999999999999999998877788888888887654322 2347999999999999886532
Q ss_pred ceEEEecceeeeecccccccc-cccccchhhhhhcccccccceeecccCcchhhcc-----ccceeeeeccccccccccc
Q 003178 528 LSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKELVLK-----REHTYIDTVGLGSVETPVK 601 (842)
Q Consensus 528 ~~~~L~~l~~lVlDEAh~lld-~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~-----~~~~~i~~v~~~~~~~~~~ 601 (842)
...+.++++|||||||++++ .++...+..+...+++..|+++||||++..+... .....+... ........
T Consensus 163 -~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 239 (412)
T 3fht_A 163 -FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK--REEETLDT 239 (412)
T ss_dssp -SSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCC--GGGSSCTT
T ss_pred -CcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeec--cccccccC
Confidence 23457899999999999987 6788888899999999999999999999864211 111111111 11122333
Q ss_pred ccccccccC-chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhc
Q 003178 602 IKQSCLVAP-HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRAS 680 (842)
Q Consensus 602 l~~~~~~~~-~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g 680 (842)
+.+.+.... ...+...+..++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 315 (412)
T 3fht_A 240 IKQYYVLCSSRDEKFQALCNLYGAI----TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 315 (412)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHH----SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCChHHHHHHHHHHHhhc----CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCC
Confidence 444444443 356677777777654 456999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccccccCCCCCCcceeEEecCC------CChHHHHHHhhcCCCCCCCcceeEEeccch-hhhhccCC
Q 003178 681 KRLILVTSDVSARGMDYPDVTSVVQVGIP------PDREQYIHRLGRTGREGKEGEGVLLLAPWE-EYFLDDLK 747 (842)
Q Consensus 681 ~~~VLVaTdv~arGlDip~V~~VI~yd~P------~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E-~~~l~~L~ 747 (842)
+.+|||||+++++|||+|++++||+||+| .+..+|+||+||+||.|+.|.|++|+.+.+ ..+++.++
T Consensus 316 ~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~ 389 (412)
T 3fht_A 316 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQ 389 (412)
T ss_dssp SCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHH
T ss_pred CCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHH
Confidence 99999999999999999999999999999 467899999999999999999999998765 45555443
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=8.8e-51 Score=457.29 Aligned_cols=353 Identities=31% Similarity=0.463 Sum_probs=294.1
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
..+|+++++++.++++|.++||..|+++|.++++.++.+++++++||||+|||++|++|++..+.... .+.+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~ 91 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL--------NKIQ 91 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS--------CSCC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc--------CCcc
Confidence 45799999999999999999999999999999999999999999999999999999999987764321 2236
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
+||++||++|+.|+++.+.+++... ++.+..++|+.........+. ..++|+|+||++|.+++.... ..+.++++
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~Ivv~T~~~l~~~~~~~~---~~~~~~~~ 166 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLN-ETVHILVGTPGRVLDLASRKV---ADLSDCSL 166 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHTT-SCCSEEEECHHHHHHHHHTTC---SCCTTCCE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHhc-CCCCEEEEchHHHHHHHHhCC---cccccCCE
Confidence 9999999999999999999987654 678888888876554333332 457999999999998886542 34678999
Q ss_pred eeecccccccccccccchhhhhhcccccccceeecccCcchhhccccceeee--ecccccccccccccccccccCchhhH
Q 003178 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYID--TVGLGSVETPVKIKQSCLVAPHELHF 615 (842)
Q Consensus 538 lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~i~--~v~~~~~~~~~~l~~~~~~~~~~~k~ 615 (842)
|||||||++.+.+|...+..++..+++..|+++||||++..+.......+.. .+..........+.+.+.......+.
T Consensus 167 vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 246 (400)
T 1s2m_A 167 FIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKL 246 (400)
T ss_dssp EEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHH
T ss_pred EEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHH
Confidence 9999999999989999999999999989999999999987642111000000 01111112233455566666677777
Q ss_pred HHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCC
Q 003178 616 QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGM 695 (842)
Q Consensus 616 ~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGl 695 (842)
..+..++... ..+++||||+++..++.++..|+..++.+..+||++++.+|..+++.|++|+..|||||+++++|+
T Consensus 247 ~~l~~~~~~~----~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 322 (400)
T 1s2m_A 247 HCLNTLFSKL----QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGI 322 (400)
T ss_dssp HHHHHHHHHS----CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSC
T ss_pred HHHHHHHhhc----CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCC
Confidence 7777777653 456999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCC
Q 003178 696 DYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 747 (842)
Q Consensus 696 Dip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~ 747 (842)
|+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++.|...++.+.
T Consensus 323 dip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~ 374 (400)
T 1s2m_A 323 DIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIE 374 (400)
T ss_dssp CCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHH
T ss_pred CccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999998876666554
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.2e-50 Score=448.98 Aligned_cols=346 Identities=29% Similarity=0.431 Sum_probs=280.3
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcC--cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCc
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPP 455 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g--~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~ 455 (842)
..+|+++++++.++++|.++||..|+|+|.++++.++.+ ++++++||||+|||++|++|++..+.... .+
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~ 75 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED--------AS 75 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC--------CS
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC--------CC
Confidence 367999999999999999999999999999999999998 99999999999999999999987764322 22
Q ss_pred eEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecc
Q 003178 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (842)
Q Consensus 456 ~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l 535 (842)
.++||++||++|+.|+++.+.++.... ++.+...+++..... ....++|+|+||++|.+++... ...+.++
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~iiv~T~~~l~~~~~~~---~~~~~~~ 146 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKN-----KQINAQVIVGTPGTVLDLMRRK---LMQLQKI 146 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTT-----SCBCCSEEEECHHHHHHHHHTT---CBCCTTC
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhh-----ccCCCCEEEEcHHHHHHHHHcC---CcccccC
Confidence 369999999999999999999987544 567777776643221 1224799999999999988664 2457789
Q ss_pred eeeeecccccccc-cccccchhhhhhcccccccceeecccCcchhhcc-----ccceeeeeccccccccccccccccccc
Q 003178 536 KMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKELVLK-----REHTYIDTVGLGSVETPVKIKQSCLVA 609 (842)
Q Consensus 536 ~~lVlDEAh~lld-~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~-----~~~~~i~~v~~~~~~~~~~l~~~~~~~ 609 (842)
++||+||||++.+ .++...+..+...+++..|+++||||+++.+... .....+... ........+.+.+...
T Consensus 147 ~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 224 (395)
T 3pey_A 147 KIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQ--TNEVNVDAIKQLYMDC 224 (395)
T ss_dssp CEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCC--GGGCSCTTEEEEEEEC
T ss_pred CEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcc--ccccccccccEEEEEc
Confidence 9999999999987 7888888999999999999999999998763211 111111110 1111122333333333
Q ss_pred -CchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEec
Q 003178 610 -PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTS 688 (842)
Q Consensus 610 -~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaT 688 (842)
....+...+..++.. ...+++||||+++..++.++..|+..++.+..+||++++.+|..+++.|++|+.+|||||
T Consensus 225 ~~~~~~~~~l~~~~~~----~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 300 (395)
T 3pey_A 225 KNEADKFDVLTELYGL----MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITT 300 (395)
T ss_dssp SSHHHHHHHHHHHHTT----TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC
T ss_pred CchHHHHHHHHHHHHh----ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC
Confidence 334555666555543 356799999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCcceeEEecCCC------ChHHHHHHhhcCCCCCCCcceeEEeccch-hhhhccC
Q 003178 689 DVSARGMDYPDVTSVVQVGIPP------DREQYIHRLGRTGREGKEGEGVLLLAPWE-EYFLDDL 746 (842)
Q Consensus 689 dv~arGlDip~V~~VI~yd~P~------s~~~yiQRiGRaGR~G~~G~~i~ll~~~E-~~~l~~L 746 (842)
+++++|+|+|++++||+||+|. ++..|+||+||+||.|+.|.|++|+.+.+ ..+++.+
T Consensus 301 ~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i 365 (395)
T 3pey_A 301 NVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAI 365 (395)
T ss_dssp GGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHH
T ss_pred ChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHH
Confidence 9999999999999999999998 99999999999999999999999998754 3444443
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.7e-50 Score=441.97 Aligned_cols=343 Identities=34% Similarity=0.559 Sum_probs=290.0
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcC-cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g-~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
.+|+++++++.++++|.++||..|+|+|.++++.++++ +++++++|||||||++|++|++..+... .+.+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---------~~~~ 76 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---------NGIE 76 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---------SSCC
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc---------CCCc
Confidence 56999999999999999999999999999999999998 6999999999999999999998765321 2336
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
+||++||++|+.|+++.+.+++... ++.+..++|+.........+. .++|+|+||++|.+++.... ..+.++++
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~--~~~iiv~T~~~l~~~~~~~~---~~~~~~~~ 150 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALK--NANIVVGTPGRILDHINRGT---LNLKNVKY 150 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHH--TCSEEEECHHHHHHHHHTTC---SCTTSCCE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcC--CCCEEEecHHHHHHHHHcCC---cccccCCE
Confidence 9999999999999999999987653 677888888876554433333 37999999999998886642 34678999
Q ss_pred eeecccccccccccccchhhhhhcccccccceeecccCcchhhc-----cccceeeeecccccccccccccccccccCch
Q 003178 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKIKQSCLVAPHE 612 (842)
Q Consensus 538 lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~-----~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~ 612 (842)
||+||||++.+++|...+..++..+++..+++++|||++..+.. .....++. ......+.+.+......
T Consensus 151 iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 224 (367)
T 1hv8_A 151 FILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIK------AKINANIEQSYVEVNEN 224 (367)
T ss_dssp EEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEE------CCSSSSSEEEEEECCGG
T ss_pred EEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEE------ecCCCCceEEEEEeChH
Confidence 99999999999999999999999998999999999999887421 11111111 11223455556666777
Q ss_pred hhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccc
Q 003178 613 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 692 (842)
Q Consensus 613 ~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~a 692 (842)
.++..+..++. ....++||||+++..++.++..|+..++.+..+||++++.+|..+++.|++|+..|||||++++
T Consensus 225 ~~~~~l~~~l~-----~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 299 (367)
T 1hv8_A 225 ERFEALCRLLK-----NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMS 299 (367)
T ss_dssp GHHHHHHHHHC-----STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHH
T ss_pred HHHHHHHHHHh-----cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhh
Confidence 78777777765 3467899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCC
Q 003178 693 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 747 (842)
Q Consensus 693 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~ 747 (842)
+|+|+|++++||++++|.++.+|+||+||+||.|+.|.+++++++.|...++.++
T Consensus 300 ~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~ 354 (367)
T 1hv8_A 300 RGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIE 354 (367)
T ss_dssp HHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHH
T ss_pred cCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876655543
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.3e-50 Score=451.84 Aligned_cols=350 Identities=32% Similarity=0.517 Sum_probs=162.9
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
.+|+++++++.+++.|..+||..|+++|.++++.++.++++++++|||+|||++|++|+++.+.... .+.++
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~--------~~~~~ 92 (394)
T 1fuu_A 21 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQA 92 (394)
T ss_dssp CSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC--------CSCCE
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC--------CCCCE
Confidence 5699999999999999999999999999999999999999999999999999999999997764321 23369
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceee
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~l 538 (842)
||++||++|+.|+++.+.+++... ++.+..++|+.........+. .++|+|+||++|.+.+.... ..+.++++|
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~--~~~i~v~T~~~l~~~~~~~~---~~~~~~~~v 166 (394)
T 1fuu_A 93 LMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLR--DAQIVVGTPGRVFDNIQRRR---FRTDKIKMF 166 (394)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHH--HCSEEEECHHHHHHHHHTTS---SCCTTCCEE
T ss_pred EEEcCCHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcC--CCCEEEECHHHHHHHHHhCC---cchhhCcEE
Confidence 999999999999999999987653 678888888876544333332 37999999999998886542 345789999
Q ss_pred eecccccccccccccchhhhhhcccccccceeecccCcchhhc-----cccceeeeecccccccccccccccccccCch-
Q 003178 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKIKQSCLVAPHE- 612 (842)
Q Consensus 539 VlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~-----~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~- 612 (842)
|+||||++.+++|...+..++..+++..|++++|||+++.+.. ......+.. .........+.+.+......
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 244 (394)
T 1fuu_A 167 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV--KKDELTLEGIKQFYVNVEEEE 244 (394)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEE--CC-------------------
T ss_pred EEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEe--cCccccCCCceEEEEEcCchh
Confidence 9999999999999999999999999999999999999876321 111111111 01111222333443333332
Q ss_pred hhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccc
Q 003178 613 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 692 (842)
Q Consensus 613 ~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~a 692 (842)
.+...+..++.. ....++||||+++..++.++..|+..++.+..+||++++.+|..+++.|++|+..|||||++++
T Consensus 245 ~~~~~l~~~~~~----~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 320 (394)
T 1fuu_A 245 YKYECLTDLYDS----ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA 320 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHhc----CCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhh
Confidence 255555555543 2456999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCC
Q 003178 693 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 748 (842)
Q Consensus 693 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~ 748 (842)
+|+|+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++.+..+++.+++
T Consensus 321 ~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 376 (394)
T 1fuu_A 321 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376 (394)
T ss_dssp --------------------------------------------------------
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988777766654
No 14
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=5.8e-48 Score=456.29 Aligned_cols=337 Identities=17% Similarity=0.265 Sum_probs=263.3
Q ss_pred cccccCCCchhHhhhcc-cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 380 RFDECGISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 380 ~F~~l~l~~~l~~~L~~-~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
.+.++++++.+.+.|+. +||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. +.++
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------------~g~~ 87 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------------DGFT 87 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS--------------SSEE
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc--------------CCcE
Confidence 34568899999999998 69999999999999999999999999999999999999999731 1269
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccc---cc--cCCCceEEecCccchhh------hccccCC
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQR---RL--ESDPCQILVATPGRLLD------HIENKSG 527 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~---~l--~~~~~~IIVaTPgrLl~------~L~~~~~ 527 (842)
|||+||++|+.|+++.+..+ ++.+..+.|+........ .+ ....++|+|+||++|.. .+..
T Consensus 88 lVisP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--- 159 (591)
T 2v1x_A 88 LVICPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--- 159 (591)
T ss_dssp EEECSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH---
T ss_pred EEEeCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh---
Confidence 99999999999999999887 677888888765432211 11 23458999999998853 2221
Q ss_pred ceEEEecceeeeecccccccccc--cccchhhh--hhcccccccceeecccCcchhh------ccccceeeeeccccccc
Q 003178 528 LSVRLMGLKMLVLDEADHLLDLG--FRKDVENI--VDCLPRRRQSLLFSATMPKELV------LKREHTYIDTVGLGSVE 597 (842)
Q Consensus 528 ~~~~L~~l~~lVlDEAh~lld~g--f~~~i~~I--l~~l~~~~q~il~SATl~~~l~------~~~~~~~i~~v~~~~~~ 597 (842)
...+.++++|||||||++++|| |++.+..+ +....+..|+++||||+++.+. +.......-. ...
T Consensus 160 -~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~----~~~ 234 (591)
T 2v1x_A 160 -AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFT----ASF 234 (591)
T ss_dssp -HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEE----CCC
T ss_pred -hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEe----cCC
Confidence 1234578999999999999998 88888763 4344457899999999988631 1111000000 000
Q ss_pred ccccccccccccC--chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhH
Q 003178 598 TPVKIKQSCLVAP--HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISE 675 (842)
Q Consensus 598 ~~~~l~~~~~~~~--~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~ 675 (842)
....+...+.... ...+...+..++... ..+.++||||+|++.++.++..|...++.+..+||+|++.+|..+++
T Consensus 235 ~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~---~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~ 311 (591)
T 2v1x_A 235 NRPNLYYEVRQKPSNTEDFIEDIVKLINGR---YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHR 311 (591)
T ss_dssp CCTTEEEEEEECCSSHHHHHHHHHHHHTTT---TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCcccEEEEEeCCCcHHHHHHHHHHHHHHh---ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHH
Confidence 1111111111111 123444555555432 25679999999999999999999999999999999999999999999
Q ss_pred HHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccC
Q 003178 676 EFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDL 746 (842)
Q Consensus 676 ~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L 746 (842)
.|++|+..|||||+++++|||+|+|++||+|++|.+++.|+||+|||||.|.+|.|++|+++.|...+..+
T Consensus 312 ~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 312 KWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp HHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred HHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887665554
No 15
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.4e-48 Score=423.64 Aligned_cols=332 Identities=31% Similarity=0.502 Sum_probs=265.2
Q ss_pred CCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccch
Q 003178 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (842)
Q Consensus 386 l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTR 465 (842)
+++.+.++|.++||..|+|+|.++++.+++++++++++|||+|||++|++|+++. +.++||++||+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------------~~~~liv~P~~ 66 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------------GMKSLVVTPTR 66 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------------TCCEEEECSSH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------------cCCEEEEeCCH
Confidence 4678999999999999999999999999999999999999999999999998753 12589999999
Q ss_pred hHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccc
Q 003178 466 ELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545 (842)
Q Consensus 466 eLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~ 545 (842)
+|+.|+++.+.++.... ++.+..++|+.........+. .++|+|+||++|.+++... ...+.++++||+||||+
T Consensus 67 ~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~i~v~T~~~l~~~~~~~---~~~~~~~~~iViDEah~ 140 (337)
T 2z0m_A 67 ELTRQVASHIRDIGRYM-DTKVAEVYGGMPYKAQINRVR--NADIVVATPGRLLDLWSKG---VIDLSSFEIVIIDEADL 140 (337)
T ss_dssp HHHHHHHHHHHHHTTTS-CCCEEEECTTSCHHHHHHHHT--TCSEEEECHHHHHHHHHTT---SCCGGGCSEEEEESHHH
T ss_pred HHHHHHHHHHHHHhhhc-CCcEEEEECCcchHHHHhhcC--CCCEEEECHHHHHHHHHcC---CcchhhCcEEEEEChHH
Confidence 99999999999887543 677888888876554433333 2799999999999887654 23467899999999999
Q ss_pred ccccccccchhhhhhcccccccceeecccCcchhhccccceeeeecccccccccccccccccccCchhhHHHHHHHHhhh
Q 003178 546 LLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEH 625 (842)
Q Consensus 546 lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~ 625 (842)
+.+++|...+..++..++...++++||||++..+.......+..............+.+.+.......+. ....+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-- 216 (337)
T 2z0m_A 141 MFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWRS--KVQALR-- 216 (337)
T ss_dssp HHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSHH--HHHHHH--
T ss_pred hhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHHHH--HHHHHH--
Confidence 9999999999999999988999999999998874211000000000001111222333333333333221 112232
Q ss_pred hcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEE
Q 003178 626 ILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ 705 (842)
Q Consensus 626 ~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~ 705 (842)
...+.++||||++++.++.++..|. .+..+||++++.+|..+++.|++|+..|||||+++++|+|+|++++||+
T Consensus 217 --~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~ 290 (337)
T 2z0m_A 217 --ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN 290 (337)
T ss_dssp --TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE
T ss_pred --hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE
Confidence 2456799999999999999999887 4678999999999999999999999999999999999999999999999
Q ss_pred ecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCC
Q 003178 706 VGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 748 (842)
Q Consensus 706 yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~ 748 (842)
|++|.++..|+||+||+||.|+.|.|++|+. .|..+++.+++
T Consensus 291 ~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~ 332 (337)
T 2z0m_A 291 FDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKK 332 (337)
T ss_dssp SSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-
T ss_pred ecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHH
Confidence 9999999999999999999999999999999 67666666654
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.8e-47 Score=446.93 Aligned_cols=334 Identities=19% Similarity=0.270 Sum_probs=264.8
Q ss_pred ccccccCCCchhHhhhcc-cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 379 KRFDECGISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~-~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
..|+++++++.+.+.|++ +||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. . ..
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~-----------g~ 67 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---N-----------GL 67 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---S-----------SE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---C-----------CC
Confidence 358999999999999998 89999999999999999999999999999999999999998732 1 15
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEec
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~ 534 (842)
+|||+|+++|+.|+++.+..+ ++.+..+.++...... ...+..+.++|+|+||++|....... .+...+
T Consensus 68 ~lvi~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~---~l~~~~ 139 (523)
T 1oyw_A 68 TVVVSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE---HLAHWN 139 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH---HHTTSC
T ss_pred EEEECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHH---HHhhCC
Confidence 899999999999999998875 5677777776553321 12333456899999999996432111 011257
Q ss_pred ceeeeecccccccccc--cccchhhhh---hcccccccceeecccCcchhh------ccccceeeeeccccccccccccc
Q 003178 535 LKMLVLDEADHLLDLG--FRKDVENIV---DCLPRRRQSLLFSATMPKELV------LKREHTYIDTVGLGSVETPVKIK 603 (842)
Q Consensus 535 l~~lVlDEAh~lld~g--f~~~i~~Il---~~l~~~~q~il~SATl~~~l~------~~~~~~~i~~v~~~~~~~~~~l~ 603 (842)
+.+|||||||++.+|| |+..+..+. ..+ +..+++++|||+++... +......+.... .....
T Consensus 140 ~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~------~~r~~ 212 (523)
T 1oyw_A 140 PVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS------FDRPN 212 (523)
T ss_dssp EEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC------CCCTT
T ss_pred CCEEEEeCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC------CCCCc
Confidence 8899999999999988 666665543 333 35889999999987631 111111111000 01111
Q ss_pred ccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceE
Q 003178 604 QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRL 683 (842)
Q Consensus 604 ~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~ 683 (842)
..+.+.....+...+..++..+ .+.++||||+|++.++.++..|+..++.+..+||+|++.+|..+++.|++|+..
T Consensus 213 l~~~v~~~~~~~~~l~~~l~~~----~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 288 (523)
T 1oyw_A 213 IRYMLMEKFKPLDQLMRYVQEQ----RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ 288 (523)
T ss_dssp EEEEEEECSSHHHHHHHHHHHT----TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred eEEEEEeCCCHHHHHHHHHHhc----CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe
Confidence 2233334455666677777654 456999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhcc
Q 003178 684 ILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDD 745 (842)
Q Consensus 684 VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~ 745 (842)
|||||+++++|||+|+|++||||++|.+++.|+||+|||||.|.+|.|++|+++.|...++.
T Consensus 289 vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~ 350 (523)
T 1oyw_A 289 IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRR 350 (523)
T ss_dssp EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHH
T ss_pred EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988765544
No 17
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-46 Score=471.38 Aligned_cols=328 Identities=18% Similarity=0.198 Sum_probs=255.4
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
..|..+++++.+...+...++..|+++|.++|+.++.|+++|++|+||||||++|++|++..+... .++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g-----------~rv 230 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK-----------QRV 230 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT-----------CEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcC-----------CeE
Confidence 467888899888888888888889999999999999999999999999999999999999887432 379
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceee
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~l 538 (842)
||++||++||.|+++.+.+++. .+.+++|+.... ..++|+|+||++|.+++.... ..+.++++|
T Consensus 231 lvl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~~~--------~~~~IlV~Tpe~L~~~L~~~~---~~l~~l~lV 294 (1108)
T 3l9o_A 231 IYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITIN--------PDAGCLVMTTEILRSMLYRGS---EVMREVAWV 294 (1108)
T ss_dssp EEEESSHHHHHHHHHHHHHHTS-----SEEEECSSCBCC--------CSCSEEEEEHHHHHHHHHHCS---SHHHHEEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhC-----CccEEeCccccC--------CCCCEEEeChHHHHHHHHcCc---cccccCCEE
Confidence 9999999999999999999865 467788887643 347999999999999987763 336789999
Q ss_pred eecccccccccccccchhhhhhcccccccceeecccCcchhhcc-------ccceeeeeccccccccccccccccc----
Q 003178 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLK-------REHTYIDTVGLGSVETPVKIKQSCL---- 607 (842)
Q Consensus 539 VlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~-------~~~~~i~~v~~~~~~~~~~l~~~~~---- 607 (842)
||||||++.+++|...+..++..+++..|+|+||||+++...+. .....+.... ..+..+.++++
T Consensus 295 VIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~----~rp~pl~~~~~~~~~ 370 (1108)
T 3l9o_A 295 IFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN----FRPTPLQHYLFPAHG 370 (1108)
T ss_dssp EEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEEC----CCSSCEEEEEEETTS
T ss_pred EEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC----CCcccceEEEeecCC
Confidence 99999999999999999999999999999999999998752110 0111111100 11111111110
Q ss_pred -----ccCch----------------------------------------hh---HHHHHHHHhhhhcCCCCceEEEEec
Q 003178 608 -----VAPHE----------------------------------------LH---FQILHHLLKEHILGTPDYKVIVFCS 639 (842)
Q Consensus 608 -----~~~~~----------------------------------------~k---~~~L~~lL~~~~~~~~~~kiIVF~~ 639 (842)
++... .+ ...+..++..... ....++||||+
T Consensus 371 ~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-~~~~~vIVF~~ 449 (1108)
T 3l9o_A 371 DGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSF 449 (1108)
T ss_dssp SCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH-TTCCCEEEEES
T ss_pred cceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh-cCCCCEEEEeC
Confidence 00000 00 2223333333222 34569999999
Q ss_pred chhHHHHHHHHHHHHhhh---------------------------------------HHHHhhcCcchhhhhhhHHHhhc
Q 003178 640 TGMVTSLLYLLLREMKMN---------------------------------------VREMYSRKPQLYRDRISEEFRAS 680 (842)
Q Consensus 640 s~~~~~~l~~~L~~~~~~---------------------------------------v~~lhg~~~~~~R~~v~~~F~~g 680 (842)
++..|+.++..|...++. +..+||+|++.+|..+++.|++|
T Consensus 450 sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G 529 (1108)
T 3l9o_A 450 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG 529 (1108)
T ss_dssp CHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCC
Confidence 999999999998764433 57799999999999999999999
Q ss_pred ceEEEEeccccccCCCCCCcceeEEecC--------CCChHHHHHHhhcCCCCC--CCcceeEEeccc
Q 003178 681 KRLILVTSDVSARGMDYPDVTSVVQVGI--------PPDREQYIHRLGRTGREG--KEGEGVLLLAPW 738 (842)
Q Consensus 681 ~~~VLVaTdv~arGlDip~V~~VI~yd~--------P~s~~~yiQRiGRaGR~G--~~G~~i~ll~~~ 738 (842)
.++|||||+++++|||+|++++||+++. |.++.+|+||+|||||.| ..|.|++++.+.
T Consensus 530 ~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 530 FLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 9999999999999999999999998776 347788999999999999 678888888764
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.9e-46 Score=425.16 Aligned_cols=312 Identities=21% Similarity=0.257 Sum_probs=244.8
Q ss_pred Hhhhcc-cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHH
Q 003178 391 IKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELAS 469 (842)
Q Consensus 391 ~~~L~~-~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~ 469 (842)
.+.+++ .|| .|+|+|.++++.+++|+|++++||||||||++|++|++..+. .+.++|||+||++||.
T Consensus 11 ~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-----------~~~~~lil~Pt~~L~~ 78 (414)
T 3oiy_A 11 RSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----------KGKKSALVFPTVTLVK 78 (414)
T ss_dssp HHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-----------TTCCEEEEESSHHHHH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-----------CCCEEEEEECCHHHHH
Confidence 344444 466 699999999999999999999999999999999999876551 1236999999999999
Q ss_pred HHHHHHHHhhhcCCceeEEEEecceee---eeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccc
Q 003178 470 QIAAEAIALLKNHDGIGVLTLVGGTRF---KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL 546 (842)
Q Consensus 470 Qi~~~l~~l~~~~~~i~v~~l~Gg~~~---~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~l 546 (842)
|+++.+..++. .++.+..++|+... ......+..+.++|+|+||++|.+++.. ..+.++++|||||||++
T Consensus 79 q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-----~~~~~~~~iViDEaH~~ 151 (414)
T 3oiy_A 79 QTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAV 151 (414)
T ss_dssp HHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-----HTTCCCSEEEESCHHHH
T ss_pred HHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-----hccccccEEEEeChHhh
Confidence 99999999866 58899999999876 3334445445589999999999888753 23457999999999866
Q ss_pred c----------c-cccccc-hhhhhhccc-----------ccccceeeccc-Ccchhhccccceeeeecccccccccccc
Q 003178 547 L----------D-LGFRKD-VENIVDCLP-----------RRRQSLLFSAT-MPKELVLKREHTYIDTVGLGSVETPVKI 602 (842)
Q Consensus 547 l----------d-~gf~~~-i~~Il~~l~-----------~~~q~il~SAT-l~~~l~~~~~~~~i~~v~~~~~~~~~~l 602 (842)
. + +||... +..++..++ ...|+++|||| .|..+.......+..............+
T Consensus 152 ~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (414)
T 3oiy_A 152 LKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNI 231 (414)
T ss_dssp HHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCSE
T ss_pred hhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCccccccccc
Confidence 5 3 778888 788888877 78999999999 4544221100001110001111223344
Q ss_pred cccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHH-HHhhcCcchhhhhhhHHHhhcc
Q 003178 603 KQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVR-EMYSRKPQLYRDRISEEFRASK 681 (842)
Q Consensus 603 ~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~-~lhg~~~~~~R~~v~~~F~~g~ 681 (842)
.+.+... .+...+..++... +.++||||+++..++.++..|+..++.+. .+||. +|. ++.|++|+
T Consensus 232 ~~~~~~~---~~~~~l~~~l~~~-----~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~ 297 (414)
T 3oiy_A 232 THVRISS---RSKEKLVELLEIF-----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGK 297 (414)
T ss_dssp EEEEESS---CCHHHHHHHHHHH-----CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTS
T ss_pred hheeecc---CHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCC
Confidence 4554444 3455566666652 36899999999999999999999999998 99995 344 99999999
Q ss_pred eEEEEe----ccccccCCCCCC-cceeEEecCC--CChHHHHHHhhcCCCCC----CCcceeEEe
Q 003178 682 RLILVT----SDVSARGMDYPD-VTSVVQVGIP--PDREQYIHRLGRTGREG----KEGEGVLLL 735 (842)
Q Consensus 682 ~~VLVa----Tdv~arGlDip~-V~~VI~yd~P--~s~~~yiQRiGRaGR~G----~~G~~i~ll 735 (842)
.+|||| |+++++|||+|+ |++||+||+| .++..|+||+|||||.| +.|.+++|+
T Consensus 298 ~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 298 INILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp CSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred CeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 999999 999999999999 9999999999 99999999999999988 579999998
No 19
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.4e-46 Score=433.36 Aligned_cols=336 Identities=26% Similarity=0.359 Sum_probs=228.1
Q ss_pred ccccCCCchhHhhhcccceeeeeehhhhhhhhhhcC--cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 381 F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g--~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
|...++++.+++.|.+.||..|+++|.++|+.++++ ++++++||||||||++|++|++..+.... .+.++
T Consensus 121 ~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~--------~~~~v 192 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV--------PKPQA 192 (508)
T ss_dssp ------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC--------CSCCE
T ss_pred ccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC--------CCceE
Confidence 556678999999999999999999999999999998 99999999999999999999998775432 12369
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceee
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~l 538 (842)
|||+||++|+.|+++++.+++... ++.+...+++...... ...++|+|+||++|.+++.... ..+.++++|
T Consensus 193 Lvl~P~~~L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~Ivv~T~~~l~~~l~~~~---~~~~~~~lI 263 (508)
T 3fho_A 193 ICLAPSRELARQIMDVVTEMGKYT-EVKTAFGIKDSVPKGA-----KIDAQIVIGTPGTVMDLMKRRQ---LDARDIKVF 263 (508)
T ss_dssp EEECSCHHHHHHHHHHHHHHSTTS-SCCEEC---------------CCCCSEEEECHHHHHHHHHTTC---SCCTTCCEE
T ss_pred EEEECcHHHHHHHHHHHHHhCCcc-CeeEEEEeCCcccccc-----cCCCCEEEECHHHHHHHHHcCC---ccccCCCEE
Confidence 999999999999999999987643 4445554544332211 1247999999999999886652 346789999
Q ss_pred eecccccccc-cccccchhhhhhcccccccceeecccCcchhhc-----cccceeeeeccccccccccccccccccc-Cc
Q 003178 539 VLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKIKQSCLVA-PH 611 (842)
Q Consensus 539 VlDEAh~lld-~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~-----~~~~~~i~~v~~~~~~~~~~l~~~~~~~-~~ 611 (842)
||||||++.+ .++...+..+...+++..|++++|||+++.+.. ......+... ........+.+.+... ..
T Consensus 264 IiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~ 341 (508)
T 3fho_A 264 VLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLK--TEELSVEGIKQLYMDCQSE 341 (508)
T ss_dssp EECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCC--CCC----CCCCEEEEC--C
T ss_pred EEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEec--cccCCcccceEEEEECCch
Confidence 9999999987 678888999999999999999999999875321 1111111111 1111222333333333 34
Q ss_pred hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccc
Q 003178 612 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 691 (842)
Q Consensus 612 ~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ 691 (842)
..+...+..++... ..+++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 342 ~~k~~~l~~ll~~~----~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l 417 (508)
T 3fho_A 342 EHKYNVLVELYGLL----TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVI 417 (508)
T ss_dssp HHHHHHHHHHHC-------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC--
T ss_pred HHHHHHHHHHHHhc----CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChh
Confidence 45666666655543 46799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcceeEEecCC------CChHHHHHHhhcCCCCCCCcceeEEeccch
Q 003178 692 ARGMDYPDVTSVVQVGIP------PDREQYIHRLGRTGREGKEGEGVLLLAPWE 739 (842)
Q Consensus 692 arGlDip~V~~VI~yd~P------~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E 739 (842)
++|+|+|++++||+|+.| .++..|+||+||+||.|+.|.|++|+.+.+
T Consensus 418 ~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~ 471 (508)
T 3fho_A 418 ARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKK 471 (508)
T ss_dssp ---CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTT
T ss_pred hcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChH
Confidence 999999999999999999 889999999999999999999999998643
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3e-43 Score=426.65 Aligned_cols=330 Identities=20% Similarity=0.233 Sum_probs=255.6
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhh-hhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~-il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
.+|+++++++.+.+.+...||..|+++|.++++. +..+++++++||||||||++|.+|+++.+...+ .+
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~----------~~ 77 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNG----------GK 77 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC----------SE
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCC----------Ce
Confidence 5699999999999999999999999999999999 788999999999999999999999998876431 27
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
+||++|+|+||.|+++.++.+.. . ++.+..++|+...... .+ ..++|+|+|||+|..++.... ..+.++++
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~--~~--~~~~Iiv~Tpe~l~~~~~~~~---~~l~~~~~ 148 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWEL-I-GFKVAMTSGDYDTDDA--WL--KNYDIIITTYEKLDSLWRHRP---EWLNEVNY 148 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGG-G-TCCEEECCSCSSSCCG--GG--GGCSEEEECHHHHHHHHHHCC---GGGGGEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHhhc-C-CCEEEEEeCCCCCchh--hc--CCCCEEEEcHHHHHHHHhCCh---hHhhccCE
Confidence 99999999999999999954433 2 7788888887655432 22 247999999999999887652 23678999
Q ss_pred eeecccccccccccccchhhhhhcccccccceeecccCcchhhccc--cceeeeeccccccccccccccc----------
Q 003178 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKR--EHTYIDTVGLGSVETPVKIKQS---------- 605 (842)
Q Consensus 538 lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~--~~~~i~~v~~~~~~~~~~l~~~---------- 605 (842)
|||||||++.+.++...+..++..++ ..|+|+||||+++.-.+.. ....+. .. ..+..+...
T Consensus 149 vIiDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~~~~~~~l~~~~~~---~~--~r~~~l~~~~~~~~~~~~~ 222 (715)
T 2va8_A 149 FVLDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISNYKQIAKWLGAEPVA---TN--WRPVPLIEGVIYPERKKKE 222 (715)
T ss_dssp EEECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTHHHHHHHHTCEEEE---CC--CCSSCEEEEEEEECSSTTE
T ss_pred EEEechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCHHHHHHHhCCCccC---CC--CCCCCceEEEEecCCcccc
Confidence 99999999998888888888887776 8899999999985311110 000000 00 001111100
Q ss_pred --ccccC--------chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHh--------------------
Q 003178 606 --CLVAP--------HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK-------------------- 655 (842)
Q Consensus 606 --~~~~~--------~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~-------------------- 655 (842)
..... .......+...+ ..++++||||+++++++.++..|.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i 296 (715)
T 2va8_A 223 YNVIFKDNTTKKVHGDDAIIAYTLDSL------SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDI 296 (715)
T ss_dssp EEEEETTSCEEEEESSSHHHHHHHHHH------TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTC
T ss_pred eeeecCcchhhhcccchHHHHHHHHHH------hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHh
Confidence 00000 122333333333 245799999999999999999987531
Q ss_pred ----------------hhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEE----ec-------C
Q 003178 656 ----------------MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ----VG-------I 708 (842)
Q Consensus 656 ----------------~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~----yd-------~ 708 (842)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .
T Consensus 297 ~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~ 376 (715)
T 2va8_A 297 EEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYD 376 (715)
T ss_dssp CSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC------------
T ss_pred hhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCC
Confidence 24778999999999999999999999999999999999999999999999 99 8
Q ss_pred CCChHHHHHHhhcCCCCC--CCcceeEEeccch
Q 003178 709 PPDREQYIHRLGRTGREG--KEGEGVLLLAPWE 739 (842)
Q Consensus 709 P~s~~~yiQRiGRaGR~G--~~G~~i~ll~~~E 739 (842)
|.+..+|+||+|||||.| ..|.|++++++.+
T Consensus 377 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 377 EIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp --CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred cCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 999999999999999988 4799999998765
No 21
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.8e-43 Score=427.15 Aligned_cols=332 Identities=19% Similarity=0.208 Sum_probs=262.3
Q ss_pred cccccCCCchhHhhhcccceeeeeehhhhhhhh-hhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 380 ~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~-il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
+|+++++++.+.+.+...||..|+++|.++++. ++.+++++++||||||||++|.+|+++.+...+ .++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~----------~~~ 71 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG----------GKA 71 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC----------SEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC----------CEE
Confidence 589999999999999999999999999999998 888999999999999999999999998887432 269
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceee
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~l 538 (842)
||++|+++||.|+++.+..+... ++.+..++|+...... .+ ..++|+|+||++|..++.... ..+.++++|
T Consensus 72 l~i~P~raLa~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~--~~--~~~~Iiv~Tpe~l~~~~~~~~---~~l~~~~~v 142 (720)
T 2zj8_A 72 VYIVPLKALAEEKFQEFQDWEKI--GLRVAMATGDYDSKDE--WL--GKYDIIIATAEKFDSLLRHGS---SWIKDVKIL 142 (720)
T ss_dssp EEECSSGGGHHHHHHHTGGGGGG--TCCEEEECSCSSCCCG--GG--GGCSEEEECHHHHHHHHHHTC---TTGGGEEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHHhc--CCEEEEecCCCCcccc--cc--CCCCEEEECHHHHHHHHHcCh---hhhhcCCEE
Confidence 99999999999999999655432 7888999997654332 12 247999999999998887653 226789999
Q ss_pred eecccccccccccccchhhhhhcccccccceeecccCcchhhccccceeeeecccccccccccccccc------cccC--
Q 003178 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKIKQSC------LVAP-- 610 (842)
Q Consensus 539 VlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~i~~v~~~~~~~~~~l~~~~------~~~~-- 610 (842)
||||||++.++++...+..++..++...|+|+||||+++.-.+..-.. ...+.. ...+..+...+ ....
T Consensus 143 IiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~--~~rp~~l~~~~~~~~~~~~~~~~ 219 (720)
T 2zj8_A 143 VADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNPEELAEWLN-AELIVS--DWRPVKLRRGVFYQGFVTWEDGS 219 (720)
T ss_dssp EEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCHHHHHHHTT-EEEEEC--CCCSSEEEEEEEETTEEEETTSC
T ss_pred EEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCHHHHHHHhC-CcccCC--CCCCCcceEEEEeCCeeeccccc
Confidence 999999999988888999998888778999999999986421110000 000000 00111111111 0111
Q ss_pred ---chhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHh--------------------------------
Q 003178 611 ---HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK-------------------------------- 655 (842)
Q Consensus 611 ---~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~-------------------------------- 655 (842)
.......+...+. +++++||||++++.++.++..|.+..
T Consensus 220 ~~~~~~~~~~~~~~~~------~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~ 293 (720)
T 2zj8_A 220 IDRFSSWEELVYDAIR------KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAI 293 (720)
T ss_dssp EEECSSTTHHHHHHHH------TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHh------CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 1233344444332 35799999999999999999997641
Q ss_pred -hhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEE----ec----CCCChHHHHHHhhcCCCCC
Q 003178 656 -MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ----VG----IPPDREQYIHRLGRTGREG 726 (842)
Q Consensus 656 -~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~----yd----~P~s~~~yiQRiGRaGR~G 726 (842)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.|
T Consensus 294 ~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g 373 (720)
T 2zj8_A 294 RGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPK 373 (720)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTT
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCC
Confidence 13678999999999999999999999999999999999999999999998 77 6899999999999999998
Q ss_pred --CCcceeEEeccch
Q 003178 727 --KEGEGVLLLAPWE 739 (842)
Q Consensus 727 --~~G~~i~ll~~~E 739 (842)
..|.|++++++.+
T Consensus 374 ~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 374 YDEVGEGIIVSTSDD 388 (720)
T ss_dssp TCSEEEEEEECSSSC
T ss_pred CCCCceEEEEecCcc
Confidence 5799999998765
No 22
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.1e-43 Score=421.98 Aligned_cols=323 Identities=19% Similarity=0.212 Sum_probs=248.1
Q ss_pred ccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHH
Q 003178 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (842)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l 475 (842)
.+|| .||++|..++|.++.|+ |++|+||+|||++|++|++...+. +..++||+|||+||.|+++++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-----------g~~vlVltptreLA~qd~e~~ 144 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-----------GKGVHVVTVNEYLASRDAEQM 144 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-----------SSCEEEEESSHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHH
Confidence 4799 99999999999999998 999999999999999999854332 125999999999999999999
Q ss_pred HHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccch-hhhccccCC---ceEEEecceeeeeccccccc-ccc
Q 003178 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLL-DLG 550 (842)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrL-l~~L~~~~~---~~~~L~~l~~lVlDEAh~ll-d~g 550 (842)
..++.+. ++.+.+++||.+... +... .+++|+|+|||+| .++|..... ....+..+.++||||||+|+ |.+
T Consensus 145 ~~l~~~l-gl~v~~i~gg~~~~~--r~~~-~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea 220 (844)
T 1tf5_A 145 GKIFEFL-GLTVGLNLNSMSKDE--KREA-YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEA 220 (844)
T ss_dssp HHHHHHT-TCCEEECCTTSCHHH--HHHH-HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTT
T ss_pred HHHHhhc-CCeEEEEeCCCCHHH--HHHh-cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcc
Confidence 9998875 899999999976532 2222 2489999999999 455433210 12456789999999999998 765
Q ss_pred ---------------cccchhhhhhccc---------ccccce-----------------eecccCcch---hh------
Q 003178 551 ---------------FRKDVENIVDCLP---------RRRQSL-----------------LFSATMPKE---LV------ 580 (842)
Q Consensus 551 ---------------f~~~i~~Il~~l~---------~~~q~i-----------------l~SATl~~~---l~------ 580 (842)
|...+..|+..++ +.+|++ +||||++.. +.
T Consensus 221 ~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~ 300 (844)
T 1tf5_A 221 RTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAH 300 (844)
T ss_dssp TCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHH
T ss_pred ccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHH
Confidence 5567788888887 478888 999997631 10
Q ss_pred --ccccceeee------e---------------------------ccccc-cccccccc---------------------
Q 003178 581 --LKREHTYID------T---------------------------VGLGS-VETPVKIK--------------------- 603 (842)
Q Consensus 581 --~~~~~~~i~------~---------------------------v~~~~-~~~~~~l~--------------------- 603 (842)
+..+..++. . +.+.. ..+...+.
T Consensus 301 ~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te 380 (844)
T 1tf5_A 301 VAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTE 380 (844)
T ss_dssp HTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchh
Confidence 011111110 0 00000 00000000
Q ss_pred --------------------------ccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhh
Q 003178 604 --------------------------QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMN 657 (842)
Q Consensus 604 --------------------------~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~ 657 (842)
+.+++.....|+..+...+.... ..+.++||||+|+..++.++..|...|++
T Consensus 381 ~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~--~~~~pvLVft~s~~~se~Ls~~L~~~gi~ 458 (844)
T 1tf5_A 381 EEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRY--MTGQPVLVGTVAVETSELISKLLKNKGIP 458 (844)
T ss_dssp HHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--HHTCCEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHHCCCC
Confidence 11233455678888887776532 12458999999999999999999999999
Q ss_pred HHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCC--------CcceeEEecCCCChHHHHHHhhcCCCCCCCc
Q 003178 658 VREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYP--------DVTSVVQVGIPPDREQYIHRLGRTGREGKEG 729 (842)
Q Consensus 658 v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip--------~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G 729 (842)
+..|||++.+.+|..+...|+.| .||||||+|+||+||+ ++.+||+|++|.+...|+||+|||||.|.+|
T Consensus 459 ~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G 536 (844)
T 1tf5_A 459 HQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPG 536 (844)
T ss_dssp CEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCE
T ss_pred EEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCC
Confidence 99999999888887777667665 5999999999999999 8899999999999999999999999999999
Q ss_pred ceeEEeccchh
Q 003178 730 EGVLLLAPWEE 740 (842)
Q Consensus 730 ~~i~ll~~~E~ 740 (842)
.+++|+++.|.
T Consensus 537 ~s~~~vs~eD~ 547 (844)
T 1tf5_A 537 ITQFYLSMEDE 547 (844)
T ss_dssp EEEEEEETTSS
T ss_pred eEEEEecHHHH
Confidence 99999998764
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.1e-43 Score=411.18 Aligned_cols=331 Identities=17% Similarity=0.188 Sum_probs=196.0
Q ss_pred cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
++...|+|+|.++|+.++.++++++++|||||||++|++|+++.+..... ..+.++|||+||++|+.|+++.+.
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~lil~P~~~L~~q~~~~~~ 76 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVFK 76 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc------cCCCeEEEEeCCHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999999999988865431 113369999999999999999999
Q ss_pred HhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchh
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~ 556 (842)
+++... ++.+..++|+.........+.. +++|+|+||++|.+++.... ...+.++++|||||||++.+++....+.
T Consensus 77 ~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~ 152 (556)
T 4a2p_A 77 HHFERQ-GYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLM 152 (556)
T ss_dssp HHHGGG-TCCEEECCCC-----CHHHHHH-HCSEEEECHHHHHHHHHSSS--CCCSTTCSEEEEETGGGCSTTSHHHHHH
T ss_pred HHhccc-CceEEEEeCCCCcchhHHHhhC-CCCEEEECHHHHHHHHHhCc--ccccccCCEEEEECCcccCCcchHHHHH
Confidence 998654 7888999998865543333322 37999999999999887652 1146789999999999999876432221
Q ss_pred -hhhhc----ccccccceeecccCcchh--------------hccccceeeeecccc------ccccccc----cc----
Q 003178 557 -NIVDC----LPRRRQSLLFSATMPKEL--------------VLKREHTYIDTVGLG------SVETPVK----IK---- 603 (842)
Q Consensus 557 -~Il~~----l~~~~q~il~SATl~~~l--------------~~~~~~~~i~~v~~~------~~~~~~~----l~---- 603 (842)
.++.. ..+..|+++||||++..- ........+...... ....+.. +.
T Consensus 153 ~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (556)
T 4a2p_A 153 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIH 232 (556)
T ss_dssp HHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSC
T ss_pred HHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcC
Confidence 22211 134578999999985320 000000000000000 0000000 00
Q ss_pred -----------------------------------------ccc------------------------------------
Q 003178 604 -----------------------------------------QSC------------------------------------ 606 (842)
Q Consensus 604 -----------------------------------------~~~------------------------------------ 606 (842)
+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (556)
T 4a2p_A 233 NPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN 312 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHH
Confidence 000
Q ss_pred -----------------------------------------------------cccCchhhHHHHHHHHhhhhcCCCCce
Q 003178 607 -----------------------------------------------------LVAPHELHFQILHHLLKEHILGTPDYK 633 (842)
Q Consensus 607 -----------------------------------------------------~~~~~~~k~~~L~~lL~~~~~~~~~~k 633 (842)
.......|+..|..+|...+....+.+
T Consensus 313 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k 392 (556)
T 4a2p_A 313 DALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTR 392 (556)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCce
Confidence 000013455666666666544346789
Q ss_pred EEEEecchhHHHHHHHHHHHH------------hhhHHHHhhcCcchhhhhhhHHHhh-cceEEEEeccccccCCCCCCc
Q 003178 634 VIVFCSTGMVTSLLYLLLREM------------KMNVREMYSRKPQLYRDRISEEFRA-SKRLILVTSDVSARGMDYPDV 700 (842)
Q Consensus 634 iIVF~~s~~~~~~l~~~L~~~------------~~~v~~lhg~~~~~~R~~v~~~F~~-g~~~VLVaTdv~arGlDip~V 700 (842)
+||||+++.+++.++..|... |..+..+||+|++.+|..+++.|++ |+++|||||+++++|||+|+|
T Consensus 393 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v 472 (556)
T 4a2p_A 393 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 472 (556)
T ss_dssp EEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------
T ss_pred EEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhC
Confidence 999999999999999999765 6677888999999999999999999 999999999999999999999
Q ss_pred ceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccch
Q 003178 701 TSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWE 739 (842)
Q Consensus 701 ~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E 739 (842)
++||+||+|+++..|+||+|| ||. +.|.+++|+++.+
T Consensus 473 ~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 509 (556)
T 4a2p_A 473 NLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 509 (556)
T ss_dssp CEEEEETCCSCHHHHHHC----------CCEEEEESCHH
T ss_pred CEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcc
Confidence 999999999999999999999 998 7899999998754
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=5.8e-43 Score=423.17 Aligned_cols=332 Identities=19% Similarity=0.245 Sum_probs=256.7
Q ss_pred cccccC--CCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 380 RFDECG--ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 380 ~F~~l~--l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
+|++++ +++.+.+.|++.||..|+++|.++++.++.+++++++||||||||++|.+|+++.+... .+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----------~~ 70 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG-----------GK 70 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT-----------CC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----------Cc
Confidence 478888 99999999999999999999999999999999999999999999999999999887532 25
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
+||++|+|+||.|+++.++.+.. .++.+..++|+...... .+ ..++|+|+|||+|..++.... ..+.++++
T Consensus 71 ~l~i~P~r~La~q~~~~~~~~~~--~g~~v~~~~G~~~~~~~--~~--~~~~Iiv~Tpe~l~~~l~~~~---~~l~~~~~ 141 (702)
T 2p6r_A 71 SLYVVPLRALAGEKYESFKKWEK--IGLRIGISTGDYESRDE--HL--GDCDIIVTTSEKADSLIRNRA---SWIKAVSC 141 (702)
T ss_dssp EEEEESSHHHHHHHHHHHTTTTT--TTCCEEEECSSCBCCSS--CS--TTCSEEEEEHHHHHHHHHTTC---SGGGGCCE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHh--cCCEEEEEeCCCCcchh--hc--cCCCEEEECHHHHHHHHHcCh---hHHhhcCE
Confidence 99999999999999999964432 27888999998765332 12 258999999999999887653 23678999
Q ss_pred eeecccccccccccccchhhhhhcc---cccccceeecccCcchhhccccceeeeeccccccccccccccccc------c
Q 003178 538 LVLDEADHLLDLGFRKDVENIVDCL---PRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKIKQSCL------V 608 (842)
Q Consensus 538 lVlDEAh~lld~gf~~~i~~Il~~l---~~~~q~il~SATl~~~l~~~~~~~~i~~v~~~~~~~~~~l~~~~~------~ 608 (842)
|||||||++.++++...+..++..+ .+..|+|+||||+++.-.+..-.. ...+... ..+..+...+. .
T Consensus 142 vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~--~r~~~l~~~~~~~~~~~~ 218 (702)
T 2p6r_A 142 LVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLD-ADYYVSD--WRPVPLVEGVLCEGTLEL 218 (702)
T ss_dssp EEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHHTT-CEEEECC--CCSSCEEEEEECSSEEEE
T ss_pred EEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCCHHHHHHHhC-CCcccCC--CCCccceEEEeeCCeeec
Confidence 9999999999988888888777665 467899999999985321110000 0000000 11111111111 0
Q ss_pred cCch-------hhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH---------------------------
Q 003178 609 APHE-------LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--------------------------- 654 (842)
Q Consensus 609 ~~~~-------~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~--------------------------- 654 (842)
.... .....+...+. .++++||||++++.++.++..|...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 292 (702)
T 2p6r_A 219 FDGAFSTSRRVKFEELVEECVA------ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLA 292 (702)
T ss_dssp EETTEEEEEECCHHHHHHHHHH------TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHH
T ss_pred cCcchhhhhhhhHHHHHHHHHh------cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHH
Confidence 0100 13344444332 4579999999999999999998753
Q ss_pred ---hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEE----ec---CCCChHHHHHHhhcCCC
Q 003178 655 ---KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ----VG---IPPDREQYIHRLGRTGR 724 (842)
Q Consensus 655 ---~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~----yd---~P~s~~~yiQRiGRaGR 724 (842)
+..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||
T Consensus 293 ~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR 372 (702)
T 2p6r_A 293 ECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGR 372 (702)
T ss_dssp HHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSC
T ss_pred HHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCC
Confidence 235778999999999999999999999999999999999999999999998 76 78999999999999999
Q ss_pred CC--CCcceeEEeccchh
Q 003178 725 EG--KEGEGVLLLAPWEE 740 (842)
Q Consensus 725 ~G--~~G~~i~ll~~~E~ 740 (842)
.| ..|.|++++++.+.
T Consensus 373 ~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 373 PGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp TTTCSCEEEEEECCGGGH
T ss_pred CCCCCCceEEEEecCccH
Confidence 98 58999999988763
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.3e-42 Score=406.24 Aligned_cols=329 Identities=19% Similarity=0.200 Sum_probs=222.4
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.|+|+|.++++.++.|+++++++|||+|||++|++|+++.+..... ..+.++|||+||++|+.|+++.+.+++.
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~lil~P~~~L~~q~~~~~~~~~~ 77 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC------GQKGKVVFFANQIPVYEQQATVFSRYFE 77 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc------CCCCEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999988876431 1133699999999999999999999987
Q ss_pred cCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccc-cccchhhhh
Q 003178 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-FRKDVENIV 559 (842)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~g-f~~~i~~Il 559 (842)
.. ++.+..++|+.........+. .+++|+|+||++|.+++..... ..+.++++|||||||++.+.+ +...+...+
T Consensus 78 ~~-~~~~~~~~g~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~~~~--~~~~~~~~vViDEah~~~~~~~~~~~~~~~~ 153 (555)
T 3tbk_A 78 RL-GYNIASISGATSDSVSVQHII-EDNDIIILTPQILVNNLNNGAI--PSLSVFTLMIFDECHNTSKNHPYNQIMFRYL 153 (555)
T ss_dssp TT-TCCEEEECTTTGGGSCHHHHH-HHCSEEEECHHHHHHHHHTSSS--CCGGGCSEEEETTGGGCSTTCHHHHHHHHHH
T ss_pred cC-CcEEEEEcCCCcchhhHHHHh-cCCCEEEECHHHHHHHHhcCcc--cccccCCEEEEECccccCCcchHHHHHHHHH
Confidence 54 788999999886544333332 2479999999999998876531 146789999999999998764 222222222
Q ss_pred hcc-----cccccceeecccCcchh--------------hccccceeeeecccc------cccccc------------c-
Q 003178 560 DCL-----PRRRQSLLFSATMPKEL--------------VLKREHTYIDTVGLG------SVETPV------------K- 601 (842)
Q Consensus 560 ~~l-----~~~~q~il~SATl~~~l--------------~~~~~~~~i~~v~~~------~~~~~~------------~- 601 (842)
... ....|+++||||++... ........+...... ....+. .
T Consensus 154 ~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
T 3tbk_A 154 DHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTF 233 (555)
T ss_dssp HHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHH
T ss_pred HhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChH
Confidence 221 24578999999985420 000000000000000 000000 0
Q ss_pred -------------c-cc-----------------------cc--------------------------------------
Q 003178 602 -------------I-KQ-----------------------SC-------------------------------------- 606 (842)
Q Consensus 602 -------------l-~~-----------------------~~-------------------------------------- 606 (842)
+ .. ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 313 (555)
T 3tbk_A 234 KCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDA 313 (555)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 00
Q ss_pred ---------------------------------------------------cccCchhhHHHHHHHHhhhhcCCCCceEE
Q 003178 607 ---------------------------------------------------LVAPHELHFQILHHLLKEHILGTPDYKVI 635 (842)
Q Consensus 607 ---------------------------------------------------~~~~~~~k~~~L~~lL~~~~~~~~~~kiI 635 (842)
.......|...+..+|...+...+..++|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~l 393 (555)
T 3tbk_A 314 LIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTI 393 (555)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEE
Confidence 00001345666667776655445668999
Q ss_pred EEecchhHHHHHHHHHHHHh------------hhHHHHhhcCcchhhhhhhHHHhh-cceEEEEeccccccCCCCCCcce
Q 003178 636 VFCSTGMVTSLLYLLLREMK------------MNVREMYSRKPQLYRDRISEEFRA-SKRLILVTSDVSARGMDYPDVTS 702 (842)
Q Consensus 636 VF~~s~~~~~~l~~~L~~~~------------~~v~~lhg~~~~~~R~~v~~~F~~-g~~~VLVaTdv~arGlDip~V~~ 702 (842)
|||+++.+++.++..|...+ .....+||+|++.+|..+++.|++ |+.+|||||+++++|||+|+|++
T Consensus 394 VF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~ 473 (555)
T 3tbk_A 394 LFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNL 473 (555)
T ss_dssp EECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSE
T ss_pred EEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCE
Confidence 99999999999999999864 467788999999999999999999 99999999999999999999999
Q ss_pred eEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhh
Q 003178 703 VVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEY 741 (842)
Q Consensus 703 VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~ 741 (842)
||+||+|+++..|+||+|| ||. +.|.+++|+++.+..
T Consensus 474 VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 474 VILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVI 510 (555)
T ss_dssp EEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHH
T ss_pred EEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHH
Confidence 9999999999999999999 998 899999999886643
No 26
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.4e-42 Score=434.74 Aligned_cols=279 Identities=20% Similarity=0.261 Sum_probs=221.7
Q ss_pred cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
.|| .||++|.++|+.++.|+|++++||||||||++|++|++..+. .+.++|||+||++||.|+++.+.
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~-----------~~~~~Lil~PtreLa~Q~~~~l~ 142 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----------KGKKSALVFPTVTLVKQTLERLQ 142 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT-----------TTCCEEEEESSHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh-----------cCCeEEEEechHHHHHHHHHHHH
Confidence 577 599999999999999999999999999999988888776551 12369999999999999999999
Q ss_pred HhhhcCCceeEEEEecceee---eeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccc-------
Q 003178 477 ALLKNHDGIGVLTLVGGTRF---KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL------- 546 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~---~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~l------- 546 (842)
.+. ..++.+..++|+... ......+..+.++|+|+||++|++++.. ..+.++++|||||||++
T Consensus 143 ~l~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lViDEaH~l~~~~r~~ 215 (1104)
T 4ddu_A 143 KLA--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNI 215 (1104)
T ss_dssp TTS--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEEESCHHHHTTSSHHH
T ss_pred Hhh--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEEEeCCCccccccccc
Confidence 965 457899999999876 3344555555589999999999988763 33568999999999654
Q ss_pred ---cc-cccccc-hhhhhhccc-----------ccccceeeccc-Ccchhh--ccccceeeeeccccccccccccccccc
Q 003178 547 ---LD-LGFRKD-VENIVDCLP-----------RRRQSLLFSAT-MPKELV--LKREHTYIDTVGLGSVETPVKIKQSCL 607 (842)
Q Consensus 547 ---ld-~gf~~~-i~~Il~~l~-----------~~~q~il~SAT-l~~~l~--~~~~~~~i~~v~~~~~~~~~~l~~~~~ 607 (842)
++ +||... +..++..++ ..+|+++|||| .|..+. +......+.. .........+.+.++
T Consensus 216 Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v--~~~~~~~~~i~~~~~ 293 (1104)
T 4ddu_A 216 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV--GRLVSVARNITHVRI 293 (1104)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCC--CBCCCCCCCEEEEEE
T ss_pred hhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEe--ccCCCCcCCceeEEE
Confidence 45 899988 888998887 78999999999 454432 1111111111 111223444555555
Q ss_pred ccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHH-HHhhcCcchhhhhhhHHHhhcceEEEE
Q 003178 608 VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVR-EMYSRKPQLYRDRISEEFRASKRLILV 686 (842)
Q Consensus 608 ~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~-~lhg~~~~~~R~~v~~~F~~g~~~VLV 686 (842)
.+ .+...+..++... +.++||||+++..++.++..|+..++.+. .+||. |.+ ++.|++|+.+|||
T Consensus 294 ~~---~k~~~L~~ll~~~-----~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLV 359 (1104)
T 4ddu_A 294 SS---RSKEKLVELLEIF-----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILI 359 (1104)
T ss_dssp SC---CCHHHHHHHHHHH-----CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEE
T ss_pred ec---CHHHHHHHHHHhc-----CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEE
Confidence 44 3555666666652 36999999999999999999999999998 99993 555 9999999999999
Q ss_pred e----ccccccCCCCCC-cceeEEecCCC
Q 003178 687 T----SDVSARGMDYPD-VTSVVQVGIPP 710 (842)
Q Consensus 687 a----Tdv~arGlDip~-V~~VI~yd~P~ 710 (842)
| |++++||||+|+ |++|||||+|.
T Consensus 360 atas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 360 GVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp EETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred EecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 9 999999999999 99999999998
No 27
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.6e-42 Score=416.67 Aligned_cols=338 Identities=17% Similarity=0.183 Sum_probs=216.0
Q ss_pred HhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHH
Q 003178 391 IKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (842)
Q Consensus 391 ~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Q 470 (842)
..+|..+||..|+++|.++++.++.|+++|+++|||+|||++|++|+++.+...... .+.++|||+||++|+.|
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~------~~~~~lvl~Pt~~L~~Q 76 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG------QKGKVVFFANQIPVYEQ 76 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTT------CCCCEEEECSSHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccC------CCCeEEEEECCHHHHHH
Confidence 456788999999999999999999999999999999999999999999887654321 11369999999999999
Q ss_pred HHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccc
Q 003178 471 IAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG 550 (842)
Q Consensus 471 i~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~g 550 (842)
+++++.+++.. .++.+..++|+.........+.. .++|+|+||++|.+++..... ..+.++++|||||||++.+..
T Consensus 77 ~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~L~~~l~~~~~--~~l~~~~~vViDEaH~~~~~~ 152 (696)
T 2ykg_A 77 NKSVFSKYFER-HGYRVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLKKGTI--PSLSIFTLMIFDECHNTSKQH 152 (696)
T ss_dssp HHHHHHHHTTT-TTCCEEEECSSSCSSSCHHHHHH-TCSEEEECHHHHHHHHHTTSS--CCGGGCSEEEEETGGGCSTTC
T ss_pred HHHHHHHHhcc-CCceEEEEeCCccccccHHHhcc-CCCEEEECHHHHHHHHhcCcc--cccccccEEEEeCCCcccCcc
Confidence 99999999754 37889999998865444333333 479999999999998876521 146789999999999987543
Q ss_pred -cccchhhhhh-----cccccccceeecccCcch-----------h-hcc--ccceeeeec-------------------
Q 003178 551 -FRKDVENIVD-----CLPRRRQSLLFSATMPKE-----------L-VLK--REHTYIDTV------------------- 591 (842)
Q Consensus 551 -f~~~i~~Il~-----~l~~~~q~il~SATl~~~-----------l-~~~--~~~~~i~~v------------------- 591 (842)
+...+...+. ..++..++++||||+... + .+. .....+...
T Consensus 153 ~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~ 232 (696)
T 2ykg_A 153 PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR 232 (696)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEE
T ss_pred cHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEE
Confidence 2222211222 124568999999998621 0 000 000000000
Q ss_pred --ccccc----------------------c--------------------------------------------------
Q 003178 592 --GLGSV----------------------E-------------------------------------------------- 597 (842)
Q Consensus 592 --~~~~~----------------------~-------------------------------------------------- 597 (842)
..... .
T Consensus 233 ~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 312 (696)
T 2ykg_A 233 KVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY 312 (696)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHH
T ss_pred ecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHH
Confidence 00000 0
Q ss_pred ------------------------------------ccccccccccc-------------c---CchhhHHHHHHHHhhh
Q 003178 598 ------------------------------------TPVKIKQSCLV-------------A---PHELHFQILHHLLKEH 625 (842)
Q Consensus 598 ------------------------------------~~~~l~~~~~~-------------~---~~~~k~~~L~~lL~~~ 625 (842)
....+.+.+.. . ....++..|..++...
T Consensus 313 ~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~ 392 (696)
T 2ykg_A 313 TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 392 (696)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 00000000000 0 1345677777777776
Q ss_pred hcCCCCceEEEEecchhHHHHHHHHHHHHh----hhHHHH--------hhcCcchhhhhhhHHHhh-cceEEEEeccccc
Q 003178 626 ILGTPDYKVIVFCSTGMVTSLLYLLLREMK----MNVREM--------YSRKPQLYRDRISEEFRA-SKRLILVTSDVSA 692 (842)
Q Consensus 626 ~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~----~~v~~l--------hg~~~~~~R~~v~~~F~~-g~~~VLVaTdv~a 692 (842)
....++.++||||+++..++.++..|+..+ +.+..+ ||+|++.+|..+++.|++ |+.+|||||++++
T Consensus 393 ~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~ 472 (696)
T 2ykg_A 393 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 472 (696)
T ss_dssp HTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSC
T ss_pred hccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhh
Confidence 555567799999999999999999999877 677777 669999999999999998 9999999999999
Q ss_pred cCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchh
Q 003178 693 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 740 (842)
Q Consensus 693 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~ 740 (842)
+|||+|+|++||+||+|.++..|+||+|| ||. +.|.+++|++..+.
T Consensus 473 ~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 473 EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGV 518 (696)
T ss_dssp CC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHH
T ss_pred cCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCH
Confidence 99999999999999999999999999999 998 68999999987654
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.6e-41 Score=411.99 Aligned_cols=332 Identities=17% Similarity=0.192 Sum_probs=202.8
Q ss_pred ccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHH
Q 003178 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (842)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l 475 (842)
.+|+..|+|+|.++|+.++.|+++|+++|||||||++|++|++..+..... ..+.++|||+||++|+.|+++.+
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~------~~~~~~Lvl~Pt~~L~~Q~~~~~ 316 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVF 316 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc------cCCCeEEEEeCCHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999988876421 11336999999999999999999
Q ss_pred HHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccc-
Q 003178 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD- 554 (842)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~- 554 (842)
.+++... ++.+..++|+.........+.. +++|+|+||++|.+++.... ...+.++++|||||||++.+.+....
T Consensus 317 ~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~iViDEaH~~~~~~~~~~i 392 (797)
T 4a2q_A 317 KHHFERQ-GYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVL 392 (797)
T ss_dssp HHHHGGG-TCCEEEECCC-----CHHHHHH-TCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEETTGGGCSTTSHHHHH
T ss_pred HHhcccC-CceEEEEeCCcchhhhHHHhhC-CCCEEEEchHHHHHHHHhcc--ccccccCCEEEEECccccCCCccHHHH
Confidence 9998654 7889999999866544333332 47999999999999887542 12467899999999999987643222
Q ss_pred hhhhhhc----ccccccceeecccCcch-----------hh-cc--ccceeeeeccc-----------cc-----cc--c
Q 003178 555 VENIVDC----LPRRRQSLLFSATMPKE-----------LV-LK--REHTYIDTVGL-----------GS-----VE--T 598 (842)
Q Consensus 555 i~~Il~~----l~~~~q~il~SATl~~~-----------l~-~~--~~~~~i~~v~~-----------~~-----~~--~ 598 (842)
+..++.. ..+..|+++||||+... +. +. .....+..... .. .. .
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 472 (797)
T 4a2q_A 393 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRI 472 (797)
T ss_dssp HHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCS
T ss_pred HHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCC
Confidence 2222221 13457899999998531 00 00 00000000000 00 00 0
Q ss_pred ccc---------------------------c----------cccc-----------------------------------
Q 003178 599 PVK---------------------------I----------KQSC----------------------------------- 606 (842)
Q Consensus 599 ~~~---------------------------l----------~~~~----------------------------------- 606 (842)
+.. + .+..
T Consensus 473 ~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 552 (797)
T 4a2q_A 473 HNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 552 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 000 0 0000
Q ss_pred ------------------------------------------------------cccCchhhHHHHHHHHhhhhcCCCCc
Q 003178 607 ------------------------------------------------------LVAPHELHFQILHHLLKEHILGTPDY 632 (842)
Q Consensus 607 ------------------------------------------------------~~~~~~~k~~~L~~lL~~~~~~~~~~ 632 (842)
.......|+..|..+|...+...++.
T Consensus 553 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~ 632 (797)
T 4a2q_A 553 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 632 (797)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCC
Confidence 00001335556666666654445678
Q ss_pred eEEEEecchhHHHHHHHHHHH------------HhhhHHHHhhcCcchhhhhhhHHHhh-cceEEEEeccccccCCCCCC
Q 003178 633 KVIVFCSTGMVTSLLYLLLRE------------MKMNVREMYSRKPQLYRDRISEEFRA-SKRLILVTSDVSARGMDYPD 699 (842)
Q Consensus 633 kiIVF~~s~~~~~~l~~~L~~------------~~~~v~~lhg~~~~~~R~~v~~~F~~-g~~~VLVaTdv~arGlDip~ 699 (842)
++||||+++..++.++..|+. .|..+..+||+|++.+|..+++.|++ |+++|||||+++++|||+|+
T Consensus 633 kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~ 712 (797)
T 4a2q_A 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQ 712 (797)
T ss_dssp CEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CC
T ss_pred eEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchh
Confidence 999999999999999999987 36678889999999999999999999 99999999999999999999
Q ss_pred cceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccch
Q 003178 700 VTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWE 739 (842)
Q Consensus 700 V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E 739 (842)
|++||+||+|+++..|+||+|| ||. +.|.+++|+++.+
T Consensus 713 v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 713 CNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (797)
T ss_dssp CSEEEEESCCSCHHHHHTC---------CCCEEEEECCHH
T ss_pred CCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCc
Confidence 9999999999999999999999 998 7999999998754
No 29
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=5e-41 Score=398.09 Aligned_cols=322 Identities=20% Similarity=0.200 Sum_probs=227.4
Q ss_pred cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
+|. .|+++|..+++.++.|+ |+.++||||||++|++|++...+.. ..++||+|||+||.|+++++.
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g-----------~~vlVltPTreLA~Q~~e~~~ 136 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTG-----------KGVHVVTVNDYLAQRDAENNR 136 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTS-----------SCCEEEESSHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcC-----------CcEEEEcCCHHHHHHHHHHHH
Confidence 454 79999999999999998 9999999999999999998654321 258999999999999999999
Q ss_pred HhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccch-hhhccccCC---ceEEEecceeeeeccccccc-ccc-
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLL-DLG- 550 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrL-l~~L~~~~~---~~~~L~~l~~lVlDEAh~ll-d~g- 550 (842)
.++.+. ++.+.+++||.+.. .+.+. .+++|+|||||+| .++|..+.. ....+.++.++||||||+|+ +.+
T Consensus 137 ~l~~~l-gl~v~~i~GG~~~~--~r~~~-~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~ 212 (853)
T 2fsf_A 137 PLFEFL-GLTVGINLPGMPAP--AKREA-YAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEAR 212 (853)
T ss_dssp HHHHHT-TCCEEECCTTCCHH--HHHHH-HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTT
T ss_pred HHHHhc-CCeEEEEeCCCCHH--HHHHh-cCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCc
Confidence 998876 89999999997753 22222 2489999999999 677764421 12446789999999999999 654
Q ss_pred --------------cccchhhhhhcccc--------------------cccce------------------------eec
Q 003178 551 --------------FRKDVENIVDCLPR--------------------RRQSL------------------------LFS 572 (842)
Q Consensus 551 --------------f~~~i~~Il~~l~~--------------------~~q~i------------------------l~S 572 (842)
|...+..|+..+++ .+|++ +||
T Consensus 213 tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfs 292 (853)
T 2fsf_A 213 TPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 292 (853)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred ccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccC
Confidence 55677888888874 56664 899
Q ss_pred ccCcch---hh--------ccccceee---------e------------------e------cccc-ccccccccc----
Q 003178 573 ATMPKE---LV--------LKREHTYI---------D------------------T------VGLG-SVETPVKIK---- 603 (842)
Q Consensus 573 ATl~~~---l~--------~~~~~~~i---------~------------------~------v~~~-~~~~~~~l~---- 603 (842)
||.+.. +. +..+..++ + . +.+. ...+...+.
T Consensus 293 at~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qny 372 (853)
T 2fsf_A 293 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNY 372 (853)
T ss_dssp ----------------------------------------------------------------CCCCCEEEEEEEHHHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHH
Confidence 997642 10 00000000 0 0 0000 000111111
Q ss_pred -------------------------------------------ccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecc
Q 003178 604 -------------------------------------------QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCST 640 (842)
Q Consensus 604 -------------------------------------------~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s 640 (842)
+.+++.....|+..+...+.... ..+.++||||+|
T Consensus 373 fr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~--~~gqpvLVft~s 450 (853)
T 2fsf_A 373 FRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERT--AKGQPVLVGTIS 450 (853)
T ss_dssp HTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--TTTCCEEEEESS
T ss_pred HhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHh--cCCCCEEEEECc
Confidence 11234456778888888776543 235689999999
Q ss_pred hhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCC---------------------
Q 003178 641 GMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPD--------------------- 699 (842)
Q Consensus 641 ~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~--------------------- 699 (842)
+..++.++..|++.|+++..|||++.+.++..+.+.|+.| .|+||||+|+||+||+.
T Consensus 451 ie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~ 528 (853)
T 2fsf_A 451 IEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEK 528 (853)
T ss_dssp HHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHH
Confidence 9999999999999999999999999888888888889888 59999999999999997
Q ss_pred -----------c-----ceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchh
Q 003178 700 -----------V-----TSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 740 (842)
Q Consensus 700 -----------V-----~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~ 740 (842)
| .+||+|+.|.+...|+||+|||||.|.+|.+++|++..|.
T Consensus 529 ~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 529 IKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 4 6999999999999999999999999999999999998774
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-41 Score=418.77 Aligned_cols=320 Identities=18% Similarity=0.193 Sum_probs=244.4
Q ss_pred hcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHH
Q 003178 394 LTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAA 473 (842)
Q Consensus 394 L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~ 473 (842)
....+|. |+++|.++|+.++.|++++|+||||||||++|.+|++..+.. +.++||++||++|+.|+++
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-----------g~rvL~l~PtkaLa~Q~~~ 147 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQRVIYTSPIKALSNQKYR 147 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-----------TCEEEEEESSHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-----------CCeEEEECChHHHHHHHHH
Confidence 4456776 999999999999999999999999999999999998877632 2379999999999999999
Q ss_pred HHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccccccccccc
Q 003178 474 EAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553 (842)
Q Consensus 474 ~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~ 553 (842)
.+.+++. .+.+++|+..... .++|+|+||++|..++.... ..+.++++|||||||++.++++..
T Consensus 148 ~l~~~~~-----~vglltGd~~~~~--------~~~IvV~Tpe~L~~~L~~~~---~~l~~l~lVViDEaH~l~d~~rg~ 211 (1010)
T 2xgj_A 148 ELLAEFG-----DVGLMTGDITINP--------DAGCLVMTTEILRSMLYRGS---EVMREVAWVIFDEVHYMRDKERGV 211 (1010)
T ss_dssp HHHHHHS-----CEEEECSSCEECT--------TCSEEEEEHHHHHHHHHHTC---TTGGGEEEEEEETGGGGGCTTTHH
T ss_pred HHHHHhC-----CEEEEeCCCccCC--------CCCEEEEcHHHHHHHHHcCc---chhhcCCEEEEechhhhcccchhH
Confidence 9999875 4777888876532 37899999999998887542 346789999999999999998888
Q ss_pred chhhhhhcccccccceeecccCcchhhcc-------ccceeeeecccccccccccccccccc---------cCchh----
Q 003178 554 DVENIVDCLPRRRQSLLFSATMPKELVLK-------REHTYIDTVGLGSVETPVKIKQSCLV---------APHEL---- 613 (842)
Q Consensus 554 ~i~~Il~~l~~~~q~il~SATl~~~l~~~-------~~~~~i~~v~~~~~~~~~~l~~~~~~---------~~~~~---- 613 (842)
.+..++..++...|+|+||||+++...+. .....+... ...+..+.++++. .....
T Consensus 212 ~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~----~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1010)
T 2xgj_A 212 VWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYT----NFRPTPLQHYLFPAHGDGIYLVVDEKSTFRE 287 (1010)
T ss_dssp HHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEE----CCCSSCEEEEEEETTSSCCEEEECTTCCBCH
T ss_pred HHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEec----CCCcccceEEEEecCCcceeeeeccccccch
Confidence 89999999999999999999998753211 101111000 0111112111110 00000
Q ss_pred -------------------------------h--------HHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH
Q 003178 614 -------------------------------H--------FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM 654 (842)
Q Consensus 614 -------------------------------k--------~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~ 654 (842)
+ ...+..++.... .....++||||+++..|+.++..|...
T Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~-~~~~~~~IVF~~sr~~~e~la~~L~~~ 366 (1010)
T 2xgj_A 288 ENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIW-KKKYNPVIVFSFSKRDCEELALKMSKL 366 (1010)
T ss_dssp HHHHHHHHTCC------------------------------CHHHHHHHHHH-HHTCCSEEEEESSHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHH-hcCCCCEEEEECCHHHHHHHHHHHHhC
Confidence 0 111222222211 123458999999999999999888652
Q ss_pred h---------------------------------------hhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCC
Q 003178 655 K---------------------------------------MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGM 695 (842)
Q Consensus 655 ~---------------------------------------~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGl 695 (842)
+ ..+..+||+|++.+|..+++.|++|.++|||||+++++||
T Consensus 367 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GI 446 (1010)
T 2xgj_A 367 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGL 446 (1010)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGST
T ss_pred CCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccC
Confidence 2 2256689999999999999999999999999999999999
Q ss_pred CCCCcceeEE----ecC----CCChHHHHHHhhcCCCCCC--CcceeEEeccc-hhhhhccC
Q 003178 696 DYPDVTSVVQ----VGI----PPDREQYIHRLGRTGREGK--EGEGVLLLAPW-EEYFLDDL 746 (842)
Q Consensus 696 Dip~V~~VI~----yd~----P~s~~~yiQRiGRaGR~G~--~G~~i~ll~~~-E~~~l~~L 746 (842)
|+|++++||+ ||. |.++.+|+||+|||||.|. .|.|++++.+. +...+..+
T Consensus 447 DiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 447 NMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp TCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 9999999999 999 8999999999999999996 59999999865 43344433
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3e-41 Score=422.54 Aligned_cols=309 Identities=21% Similarity=0.245 Sum_probs=234.8
Q ss_pred cccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHH
Q 003178 395 TAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (842)
Q Consensus 395 ~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~ 474 (842)
..+||. | ++|.++|+.++.|+|++++||||||||+ |++|++..+... +.++|||+||++||.|+++.
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~----------~~~~lil~PtreLa~Q~~~~ 118 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK----------GKRCYVIFPTSLLVIQAAET 118 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT----------SCCEEEEESCHHHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc----------CCeEEEEeccHHHHHHHHHH
Confidence 358999 9 9999999999999999999999999998 999999887642 23699999999999999999
Q ss_pred HHHhhhcCCce----eEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccccc
Q 003178 475 AIALLKNHDGI----GVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547 (842)
Q Consensus 475 l~~l~~~~~~i----~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~ll 547 (842)
+..++... ++ .+..++|+...... ...+.. ++|+|+||++|++++.. +.++++|||||||+|+
T Consensus 119 l~~l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~-------L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 119 IRKYAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRE-------LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp HHHHHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTT-------SCCCSEEEESCHHHHH
T ss_pred HHHHHhhc-CCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHH-------hccCCEEEEeChhhhh
Confidence 99998654 56 78899998876542 233333 89999999999998865 4589999999999999
Q ss_pred ccccccchhhhhhc-----------ccccccceeecccCcchhhc----cccceeeeecccccccccccccccccccCch
Q 003178 548 DLGFRKDVENIVDC-----------LPRRRQSLLFSATMPKELVL----KREHTYIDTVGLGSVETPVKIKQSCLVAPHE 612 (842)
Q Consensus 548 d~gf~~~i~~Il~~-----------l~~~~q~il~SATl~~~l~~----~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~ 612 (842)
++ ...+..++.. ++..+|+++||||++....+ ......+.. .........+.+.++ ..
T Consensus 189 ~~--~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v--~~~~~~~~~i~~~~~---~~ 261 (1054)
T 1gku_B 189 KA--SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDI--GSSRITVRNVEDVAV---ND 261 (1054)
T ss_dssp TS--THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCC--SCCEECCCCEEEEEE---SC
T ss_pred hc--cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEc--cCcccCcCCceEEEe---ch
Confidence 83 3344444333 35678999999999876110 001111100 011112223444433 24
Q ss_pred hhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEe----c
Q 003178 613 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVT----S 688 (842)
Q Consensus 613 ~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVa----T 688 (842)
.+...+..++... +.++||||+|+..++.++..|+.. +.+..+||++ ..+++.|++|+.+|||| |
T Consensus 262 ~k~~~L~~ll~~~-----~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~T 330 (1054)
T 1gku_B 262 ESISTLSSILEKL-----GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYY 330 (1054)
T ss_dssp CCTTTTHHHHTTS-----CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC--
T ss_pred hHHHHHHHHHhhc-----CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCC
Confidence 4455566666543 468999999999999999999887 8999999997 47889999999999999 9
Q ss_pred cccccCCCCCCc-ceeEEecCC----------------------------------------------------------
Q 003178 689 DVSARGMDYPDV-TSVVQVGIP---------------------------------------------------------- 709 (842)
Q Consensus 689 dv~arGlDip~V-~~VI~yd~P---------------------------------------------------------- 709 (842)
+++++|||+|+| ++||+||+|
T Consensus 331 dv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (1054)
T 1gku_B 331 GTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQ 410 (1054)
T ss_dssp ----CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCS
T ss_pred CeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999996 999999999
Q ss_pred -------------CChHHHHHHhhcCCCCCCCc--ceeEEeccchhhhhc
Q 003178 710 -------------PDREQYIHRLGRTGREGKEG--EGVLLLAPWEEYFLD 744 (842)
Q Consensus 710 -------------~s~~~yiQRiGRaGR~G~~G--~~i~ll~~~E~~~l~ 744 (842)
.+..+|+||+|||||.|..| .+++|+...+..+++
T Consensus 411 ~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~ 460 (1054)
T 1gku_B 411 AKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLS 460 (1054)
T ss_dssp CSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHH
T ss_pred ccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHH
Confidence 78999999999999988765 478777776654443
No 32
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=4.9e-40 Score=389.85 Aligned_cols=322 Identities=20% Similarity=0.209 Sum_probs=249.5
Q ss_pred cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
+|+ .||++|..+++.++.|+ |++++||+|||++|++|++...+.. ..++||+||++||.|+++++.
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g-----------~~v~VvTpTreLA~Qdae~m~ 173 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAG-----------NGVHIVTVNDYLAKRDSEWMG 173 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTT-----------SCEEEEESSHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhC-----------CCeEEEeCCHHHHHHHHHHHH
Confidence 688 89999999999999998 9999999999999999997554432 149999999999999999999
Q ss_pred HhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccch-hhhccccCC---ceEEEecceeeeeccccccc-cc--
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLL-DL-- 549 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrL-l~~L~~~~~---~~~~L~~l~~lVlDEAh~ll-d~-- 549 (842)
.++.+. ++.+.+++||.+.. .+... .+++|+|+||++| +++|..... ....+..+.++||||||.|+ |.
T Consensus 174 ~l~~~l-GLsv~~i~gg~~~~--~r~~~-y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDear 249 (922)
T 1nkt_A 174 RVHRFL-GLQVGVILATMTPD--ERRVA-YNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEAR 249 (922)
T ss_dssp HHHHHT-TCCEEECCTTCCHH--HHHHH-HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGG
T ss_pred HHHhhc-CCeEEEEeCCCCHH--HHHHh-cCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCc
Confidence 998875 89999999997643 22222 2489999999999 676654311 12456789999999999998 53
Q ss_pred -------------ccccchhhhhhccc---------ccccce-----------------eecccCcch---hh-------
Q 003178 550 -------------GFRKDVENIVDCLP---------RRRQSL-----------------LFSATMPKE---LV------- 580 (842)
Q Consensus 550 -------------gf~~~i~~Il~~l~---------~~~q~i-----------------l~SATl~~~---l~------- 580 (842)
+|...+..|+..++ +.+|++ +||||.+.. +.
T Consensus 250 tPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~ 329 (922)
T 1nkt_A 250 TPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKE 329 (922)
T ss_dssp SCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHH
T ss_pred cceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHH
Confidence 57778889999998 678888 999998742 10
Q ss_pred -ccccceeee------ecc-------------------------cc---ccccccccc----------------------
Q 003178 581 -LKREHTYID------TVG-------------------------LG---SVETPVKIK---------------------- 603 (842)
Q Consensus 581 -~~~~~~~i~------~v~-------------------------~~---~~~~~~~l~---------------------- 603 (842)
+..+..++. .+. +. ...+...+.
T Consensus 330 l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~ 409 (922)
T 1nkt_A 330 LFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEA 409 (922)
T ss_dssp HCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGH
T ss_pred HhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHH
Confidence 111111100 000 00 000011111
Q ss_pred -------------------------ccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhH
Q 003178 604 -------------------------QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNV 658 (842)
Q Consensus 604 -------------------------~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v 658 (842)
+.++......|+..+...+..... .+.++||||+|+..++.++..|++.|+++
T Consensus 410 ~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~--~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~ 487 (922)
T 1nkt_A 410 AELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA--KGQPVLIGTTSVERSEYLSRQFTKRRIPH 487 (922)
T ss_dssp HHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHCCCCE
Confidence 112334556688888777765432 34589999999999999999999999999
Q ss_pred HHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCc--------------------------------------
Q 003178 659 REMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDV-------------------------------------- 700 (842)
Q Consensus 659 ~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V-------------------------------------- 700 (842)
..|||++.+.++..+.+.|+.| .|+||||+++||+||+.+
T Consensus 488 ~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (922)
T 1nkt_A 488 NVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKE 565 (922)
T ss_dssp EEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHH
T ss_pred EEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 9999998877777777888877 699999999999999975
Q ss_pred --------------ceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchh
Q 003178 701 --------------TSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 740 (842)
Q Consensus 701 --------------~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~ 740 (842)
.+||+|+.|.+...|+||+|||||.|.+|.++.|++..|.
T Consensus 566 ~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 566 EASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998764
No 33
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=402.55 Aligned_cols=327 Identities=20% Similarity=0.277 Sum_probs=222.9
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHH-HHHHHHhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI-AAEAIALL 479 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi-~~~l~~l~ 479 (842)
.|+++|.++++.++.|+++|+++|||+|||++|++|+++.+...... ..+.++|||+||++|+.|+ ++++.+++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-----~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-----TCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-----CCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999999888765321 1113589999999999999 99999987
Q ss_pred hcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccC---CceEEEecceeeeecccccccccccccchh
Q 003178 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS---GLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (842)
Q Consensus 480 ~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~---~~~~~L~~l~~lVlDEAh~lld~gf~~~i~ 556 (842)
.. ++.+..++|+.........+. ..++|+|+||++|.+++.... .....+.++++|||||||++...++...+.
T Consensus 82 ~~--~~~v~~~~g~~~~~~~~~~~~-~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 82 KK--WYRVIGLSGDTQLKISFPEVV-KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp TT--TSCEEEEC----CCCCHHHHH-HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred Cc--CceEEEEeCCcchhhHHHhhh-cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 64 478899999887654333333 347999999999998884321 112356789999999999986544333332
Q ss_pred h-hhhcc-------------cccccceeecccCcch-----------hh-c--cccceeeeecccc------ccccccc-
Q 003178 557 N-IVDCL-------------PRRRQSLLFSATMPKE-----------LV-L--KREHTYIDTVGLG------SVETPVK- 601 (842)
Q Consensus 557 ~-Il~~l-------------~~~~q~il~SATl~~~-----------l~-~--~~~~~~i~~v~~~------~~~~~~~- 601 (842)
. ++... .+..|+++||||+... +. + ......+...... ....+..
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~ 238 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKK 238 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEE
T ss_pred HHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceE
Confidence 2 22211 1456899999999862 00 0 0000000000000 0000000
Q ss_pred c----------------------cccc--------c--------------------------------------------
Q 003178 602 I----------------------KQSC--------L-------------------------------------------- 607 (842)
Q Consensus 602 l----------------------~~~~--------~-------------------------------------------- 607 (842)
+ .... .
T Consensus 239 ~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (699)
T 4gl2_A 239 FAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIR 318 (699)
T ss_dssp EEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 0
Q ss_pred --------------------------------c-------------------------cCchhhHHHHHHHHhhhhcCCC
Q 003178 608 --------------------------------V-------------------------APHELHFQILHHLLKEHILGTP 630 (842)
Q Consensus 608 --------------------------------~-------------------------~~~~~k~~~L~~lL~~~~~~~~ 630 (842)
+ .....|+..|..+|..++...+
T Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~ 398 (699)
T 4gl2_A 319 MIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTE 398 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCC
Confidence 0 0001122223334444333333
Q ss_pred -CceEEEEecchhHHHHHHHHHHHH------hhhHHHHhhc--------CcchhhhhhhHHHhhcceEEEEeccccccCC
Q 003178 631 -DYKVIVFCSTGMVTSLLYLLLREM------KMNVREMYSR--------KPQLYRDRISEEFRASKRLILVTSDVSARGM 695 (842)
Q Consensus 631 -~~kiIVF~~s~~~~~~l~~~L~~~------~~~v~~lhg~--------~~~~~R~~v~~~F~~g~~~VLVaTdv~arGl 695 (842)
+.++||||+++..++.++..|... |+.+..+||+ |++.+|..+++.|++|+.+|||||+++++||
T Consensus 399 ~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GI 478 (699)
T 4gl2_A 399 ESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGL 478 (699)
T ss_dssp SCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTS
T ss_pred CCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Confidence 679999999999999999999976 8999999999 9999999999999999999999999999999
Q ss_pred CCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccc
Q 003178 696 DYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPW 738 (842)
Q Consensus 696 Dip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~ 738 (842)
|+|+|++||+||+|+++..|+||+|||||.| .+++++.+.
T Consensus 479 Dip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~~ 518 (699)
T 4gl2_A 479 DIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAHS 518 (699)
T ss_dssp CCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEES
T ss_pred ccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEeC
Confidence 9999999999999999999999999976644 566666553
No 34
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-39 Score=372.05 Aligned_cols=320 Identities=21% Similarity=0.243 Sum_probs=238.6
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.|+|+|.++++.++.+ +++++++||+|||++++++++..+... +.++|||+||++|+.|+++++.++++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~----------~~~~liv~P~~~L~~q~~~~~~~~~~ 77 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKY----------GGKVLMLAPTKPLVLQHAESFRRLFN 77 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHS----------CSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcC----------CCeEEEEECCHHHHHHHHHHHHHHhC
Confidence 5899999999999999 999999999999999999988776521 12599999999999999999999874
Q ss_pred cCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhh
Q 003178 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (842)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~ 560 (842)
. +...+..++|+.......... ..++|+|+||+.|...+... ...+.++++|||||||++.+......+...+.
T Consensus 78 ~-~~~~v~~~~g~~~~~~~~~~~--~~~~ivv~T~~~l~~~~~~~---~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~ 151 (494)
T 1wp9_A 78 L-PPEKIVALTGEKSPEERSKAW--ARAKVIVATPQTIENDLLAG---RISLEDVSLIVFDEAHRAVGNYAYVFIAREYK 151 (494)
T ss_dssp S-CGGGEEEECSCSCHHHHHHHH--HHCSEEEECHHHHHHHHHTT---SCCTTSCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred c-chhheEEeeCCcchhhhhhhc--cCCCEEEecHHHHHHHHhcC---CcchhhceEEEEECCcccCCCCcHHHHHHHHH
Confidence 2 345788888876544221111 13799999999999877654 23456899999999999986543344444555
Q ss_pred cccccccceeecccCcchhh--------ccccceee------------eecc--cccccccccc----------------
Q 003178 561 CLPRRRQSLLFSATMPKELV--------LKREHTYI------------DTVG--LGSVETPVKI---------------- 602 (842)
Q Consensus 561 ~l~~~~q~il~SATl~~~l~--------~~~~~~~i------------~~v~--~~~~~~~~~l---------------- 602 (842)
...+..++++||||+..... +....... .... ......+..+
T Consensus 152 ~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (494)
T 1wp9_A 152 RQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALK 231 (494)
T ss_dssp HHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence 55667899999999874310 00000000 0000 0000000000
Q ss_pred ------------------------------------------------------------------cccc----------
Q 003178 603 ------------------------------------------------------------------KQSC---------- 606 (842)
Q Consensus 603 ------------------------------------------------------------------~~~~---------- 606 (842)
..++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (494)
T 1wp9_A 232 PLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAG 311 (494)
T ss_dssp HHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccc
Confidence 0000
Q ss_pred -------------------------cccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHH
Q 003178 607 -------------------------LVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREM 661 (842)
Q Consensus 607 -------------------------~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~l 661 (842)
.......|+..+..++........+.++||||+++..++.++..|...++.+..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~ 391 (494)
T 1wp9_A 312 STKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRF 391 (494)
T ss_dssp CCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEE
Confidence 0002334566677777765433457799999999999999999999999999999
Q ss_pred hh--------cCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeE
Q 003178 662 YS--------RKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVL 733 (842)
Q Consensus 662 hg--------~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ 733 (842)
|| +|++.+|..+++.|++|+..|||||+++++|||+|++++||+||+|+++..|+||+||+||.|. |.+++
T Consensus 392 ~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~ 470 (494)
T 1wp9_A 392 VGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVII 470 (494)
T ss_dssp CCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEE
T ss_pred eccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEE
Confidence 99 9999999999999999999999999999999999999999999999999999999999999997 99999
Q ss_pred Eeccc
Q 003178 734 LLAPW 738 (842)
Q Consensus 734 ll~~~ 738 (842)
|+++.
T Consensus 471 l~~~~ 475 (494)
T 1wp9_A 471 LMAKG 475 (494)
T ss_dssp EEETT
T ss_pred EEecC
Confidence 99874
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5.7e-40 Score=407.91 Aligned_cols=306 Identities=15% Similarity=0.210 Sum_probs=233.5
Q ss_pred ccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHH
Q 003178 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (842)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l 475 (842)
.++|. |+++|.++|+.+++|++++++||||||||++|++|+...+.. +.++||++||++|+.|+++.+
T Consensus 35 ~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~-----------g~~vlvl~PtraLa~Q~~~~l 102 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-----------MTKTIYTSPIKALSNQKFRDF 102 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT-----------TCEEEEEESCGGGHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc-----------CCeEEEEeCCHHHHHHHHHHH
Confidence 45665 899999999999999999999999999999999988765432 237999999999999999999
Q ss_pred HHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccch
Q 003178 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555 (842)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i 555 (842)
.+++. ++.+..++|+.... ..++|+|+||++|..++.... ..+.++++|||||||++.+++|...+
T Consensus 103 ~~~~~---~~~v~~l~G~~~~~--------~~~~IlV~Tpe~L~~~l~~~~---~~l~~l~lvViDEaH~l~d~~~g~~~ 168 (997)
T 4a4z_A 103 KETFD---DVNIGLITGDVQIN--------PDANCLIMTTEILRSMLYRGA---DLIRDVEFVIFDEVHYVNDQDRGVVW 168 (997)
T ss_dssp HTTC-----CCEEEECSSCEEC--------TTSSEEEEEHHHHHHHHHHTC---SGGGGEEEEEECCTTCCCTTCTTCCH
T ss_pred HHHcC---CCeEEEEeCCCccC--------CCCCEEEECHHHHHHHHHhCc---hhhcCCCEEEEECcccccccchHHHH
Confidence 88753 67788899987643 237999999999998886552 34678999999999999999999999
Q ss_pred hhhhhcccccccceeecccCcchhhccc-------cceeeeecccccccccccccc------------------------
Q 003178 556 ENIVDCLPRRRQSLLFSATMPKELVLKR-------EHTYIDTVGLGSVETPVKIKQ------------------------ 604 (842)
Q Consensus 556 ~~Il~~l~~~~q~il~SATl~~~l~~~~-------~~~~i~~v~~~~~~~~~~l~~------------------------ 604 (842)
..++..+++..|+|++|||+++...+.. ....+.... ..+..+.+
T Consensus 169 e~ii~~l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~----~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~ 244 (997)
T 4a4z_A 169 EEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTP----KRPVPLEINIWAKKELIPVINQNSEFLEANFR 244 (997)
T ss_dssp HHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECS----SCSSCEEEEEEETTEEEEEECTTCCBCHHHHH
T ss_pred HHHHHhcccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecC----CCCccceEEEecCCcchhcccchhhhhHHHHH
Confidence 9999999999999999999986521000 000000000 00000000
Q ss_pred ---------------------------------------------------------------------cccccCchhhH
Q 003178 605 ---------------------------------------------------------------------SCLVAPHELHF 615 (842)
Q Consensus 605 ---------------------------------------------------------------------~~~~~~~~~k~ 615 (842)
++...+...+.
T Consensus 245 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (997)
T 4a4z_A 245 KHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTW 324 (997)
T ss_dssp HHHHHHC-----------------------------------------------------------------CCCCTTHH
T ss_pred HHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHH
Confidence 01111122334
Q ss_pred HHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhh---------------------------------------
Q 003178 616 QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKM--------------------------------------- 656 (842)
Q Consensus 616 ~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~--------------------------------------- 656 (842)
..+...+.. ....++||||+|++.|+.++..|...++
T Consensus 325 ~~li~~l~~----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 400 (997)
T 4a4z_A 325 PEIVNYLRK----RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLER 400 (997)
T ss_dssp HHHHHHHHH----TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHh----CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhc
Confidence 444444443 2456999999999999999998865332
Q ss_pred hHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeE--------EecCCCChHHHHHHhhcCCCCC--
Q 003178 657 NVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVV--------QVGIPPDREQYIHRLGRTGREG-- 726 (842)
Q Consensus 657 ~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI--------~yd~P~s~~~yiQRiGRaGR~G-- 726 (842)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++.+|| +++.|.++.+|+||+|||||.|
T Consensus 401 gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~ 480 (997)
T 4a4z_A 401 GIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLD 480 (997)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTC
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCC
Confidence 467899999999999999999999999999999999999999955555 2334459999999999999998
Q ss_pred CCcceeEEe
Q 003178 727 KEGEGVLLL 735 (842)
Q Consensus 727 ~~G~~i~ll 735 (842)
..|.|++++
T Consensus 481 ~~G~vi~l~ 489 (997)
T 4a4z_A 481 STGTVIVMA 489 (997)
T ss_dssp SSEEEEEEC
T ss_pred cceEEEEec
Confidence 467777776
No 36
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=7.4e-40 Score=406.48 Aligned_cols=332 Identities=17% Similarity=0.199 Sum_probs=203.0
Q ss_pred ccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHH
Q 003178 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (842)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l 475 (842)
-.|+..|+++|.++|+.++.|++++++++||+|||++|++|+++.+..... ..+.++|||+||++|+.|+++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~------~~~~~vLvl~Pt~~L~~Q~~~~~ 316 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVF 316 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS------SCCCCEEEECSSHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc------cCCCeEEEEeCCHHHHHHHHHHH
Confidence 357888999999999999999999999999999999999999877654321 11336999999999999999999
Q ss_pred HHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccccccccc-ccc
Q 003178 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF-RKD 554 (842)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf-~~~ 554 (842)
.+++... ++.+..++|+.........+.. +++|+|+||++|.+++.... ...+.++++|||||||++...+. ...
T Consensus 317 ~~~~~~~-~~~v~~~~G~~~~~~~~~~~~~-~~~IvI~Tp~~L~~~l~~~~--~~~l~~~~liViDEaH~~~~~~~~~~i 392 (936)
T 4a2w_A 317 KHHFERQ-GYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVL 392 (936)
T ss_dssp HHHHHTT-TCCEEEECCC-----CCHHHHH-HCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEEETGGGCSTTCHHHHH
T ss_pred HHHhccc-CceEEEEECCcchhhHHHHhcc-CCCEEEecHHHHHHHHHcCc--cccccCCCEEEEECccccCCCccHHHH
Confidence 9998754 7889999999866544333332 37999999999999887642 12467899999999999987642 222
Q ss_pred hhhhhhc----ccccccceeecccCcch-----------hh-c--cccceeeeecc-------------------ccc-c
Q 003178 555 VENIVDC----LPRRRQSLLFSATMPKE-----------LV-L--KREHTYIDTVG-------------------LGS-V 596 (842)
Q Consensus 555 i~~Il~~----l~~~~q~il~SATl~~~-----------l~-~--~~~~~~i~~v~-------------------~~~-~ 596 (842)
+..++.. ..+..|+++||||+... +. + ......+.... ... .
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 472 (936)
T 4a2w_A 393 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRI 472 (936)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCS
T ss_pred HHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEeccccc
Confidence 2222221 13457899999998531 00 0 00000000000 000 0
Q ss_pred c-----------------------------c--------------------------ccc--------------------
Q 003178 597 E-----------------------------T--------------------------PVK-------------------- 601 (842)
Q Consensus 597 ~-----------------------------~--------------------------~~~-------------------- 601 (842)
. . +..
T Consensus 473 ~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~ 552 (936)
T 4a2w_A 473 HNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 552 (936)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 0 0 000
Q ss_pred ------------------ccccc-------------------------------cccCchhhHHHHHHHHhhhhcCCCCc
Q 003178 602 ------------------IKQSC-------------------------------LVAPHELHFQILHHLLKEHILGTPDY 632 (842)
Q Consensus 602 ------------------l~~~~-------------------------------~~~~~~~k~~~L~~lL~~~~~~~~~~ 632 (842)
+...+ .......|+..|..+|...+....+.
T Consensus 553 ~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~ 632 (936)
T 4a2w_A 553 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 632 (936)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTC
T ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCC
Confidence 00000 00001335555666666655445678
Q ss_pred eEEEEecchhHHHHHHHHHHHH------------hhhHHHHhhcCcchhhhhhhHHHhh-cceEEEEeccccccCCCCCC
Q 003178 633 KVIVFCSTGMVTSLLYLLLREM------------KMNVREMYSRKPQLYRDRISEEFRA-SKRLILVTSDVSARGMDYPD 699 (842)
Q Consensus 633 kiIVF~~s~~~~~~l~~~L~~~------------~~~v~~lhg~~~~~~R~~v~~~F~~-g~~~VLVaTdv~arGlDip~ 699 (842)
++||||+++.+++.++..|... |..+..+||+|++.+|..+++.|++ |+++|||||+++++|||+|+
T Consensus 633 rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~ 712 (936)
T 4a2w_A 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQ 712 (936)
T ss_dssp CEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCC
T ss_pred eEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchh
Confidence 9999999999999999999986 6778889999999999999999999 99999999999999999999
Q ss_pred cceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccch
Q 003178 700 VTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWE 739 (842)
Q Consensus 700 V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E 739 (842)
|++||+||+|+++..|+||+|| ||. +.|.+++|++..+
T Consensus 713 v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t 750 (936)
T 4a2w_A 713 CNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (936)
T ss_dssp CSEEEEESCCSCSHHHHCC---------CCCEEEEESCHH
T ss_pred CCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCC
Confidence 9999999999999999999999 998 6899999998743
No 37
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3e-40 Score=391.79 Aligned_cols=306 Identities=18% Similarity=0.153 Sum_probs=221.8
Q ss_pred ccc-cCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEE
Q 003178 381 FDE-CGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (842)
Q Consensus 381 F~~-l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~L 459 (842)
|.. +++++.++++|... ...++|+|+++++.+++|+|++++|+||||||++|++|+++.+.... .++|
T Consensus 151 ~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~----------~~vL 219 (618)
T 2whx_A 151 GNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRR----------LRTL 219 (618)
T ss_dssp CC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT----------CCEE
T ss_pred ccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCC----------CeEE
Confidence 444 66788888888764 47899999999999999999999999999999999999999887532 3699
Q ss_pred EeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCC-----ceEEEec
Q 003178 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG-----LSVRLMG 534 (842)
Q Consensus 460 IL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~-----~~~~L~~ 534 (842)
||+|||+||.|+++.+.. ..+.. .+. .+ ..++||+++++++..... ....+.+
T Consensus 220 vl~PtreLa~Qi~~~l~~-------~~v~~-~~~--------~l------~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~ 277 (618)
T 2whx_A 220 ILAPTRVVAAEMEEALRG-------LPIRY-QTP--------AV------KSDHTGREIVDLMCHATFTTRLLSSTRVPN 277 (618)
T ss_dssp EEESSHHHHHHHHHHTTT-------SCEEE-CCT--------TS------SCCCCSSSCEEEEEHHHHHHHHHHCSSCCC
T ss_pred EEcChHHHHHHHHHHhcC-------CceeE-ecc--------cc------eeccCCCceEEEEChHHHHHHHhccccccC
Confidence 999999999999987652 22221 110 00 124555555444332100 0023678
Q ss_pred ceeeeecccccccccccccchhhhhhccc-ccccceeecccCcchhhcccc--ceeeeecccccccccccccccccccCc
Q 003178 535 LKMLVLDEADHLLDLGFRKDVENIVDCLP-RRRQSLLFSATMPKELVLKRE--HTYIDTVGLGSVETPVKIKQSCLVAPH 611 (842)
Q Consensus 535 l~~lVlDEAh~lld~gf~~~i~~Il~~l~-~~~q~il~SATl~~~l~~~~~--~~~i~~v~~~~~~~~~~l~~~~~~~~~ 611 (842)
+++|||||||++ +.+|...+..++..++ +.+|+++||||++..+..... ...+. +. ..+ +.
T Consensus 278 ~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~~~~~~~~-v~-----------~~~---~~ 341 (618)
T 2whx_A 278 YNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQSNSPIED-IE-----------REI---PE 341 (618)
T ss_dssp CSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCCCSSCEEE-EE-----------CCC---CS
T ss_pred CeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhccCCceee-ec-----------ccC---CH
Confidence 999999999998 7788888888888776 679999999999876431111 11110 00 000 00
Q ss_pred hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccc
Q 003178 612 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 691 (842)
Q Consensus 612 ~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~ 691 (842)
.. +..+...+.. ..+++||||+|++.++.++..|+..++.+..+||. +|.++++.|++|+.+|||||+++
T Consensus 342 ~~-~~~ll~~l~~-----~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~ 411 (618)
T 2whx_A 342 RS-WNTGFDWITD-----YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDIS 411 (618)
T ss_dssp SC-CSSSCHHHHH-----CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGG
T ss_pred HH-HHHHHHHHHh-----CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHH
Confidence 00 0111122222 25689999999999999999999999999999984 78889999999999999999999
Q ss_pred ccCCCCCCccee--------------------EEecCCCChHHHHHHhhcCCCCCC-CcceeEEec---cchhhhhccC
Q 003178 692 ARGMDYPDVTSV--------------------VQVGIPPDREQYIHRLGRTGREGK-EGEGVLLLA---PWEEYFLDDL 746 (842)
Q Consensus 692 arGlDip~V~~V--------------------I~yd~P~s~~~yiQRiGRaGR~G~-~G~~i~ll~---~~E~~~l~~L 746 (842)
++|||+| |++| |+|+.|.+.++|+||+|||||.|. .|.|++|++ +.|..+++.+
T Consensus 412 ~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~l 489 (618)
T 2whx_A 412 EMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWT 489 (618)
T ss_dssp GTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHH
T ss_pred HcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHH
Confidence 9999997 9888 788889999999999999999974 899999998 6665555444
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.3e-39 Score=415.61 Aligned_cols=339 Identities=22% Similarity=0.291 Sum_probs=251.9
Q ss_pred ceeeeeehhhhhhhhhhc-CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 398 GYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 398 g~~~~t~iQ~~aI~~il~-g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
||+.++++|.+++|.++. ++|++|+||||||||++|.+|++..+.+...........+.++||++|+|+||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 899999999999998875 7899999999999999999999999987544333333456789999999999999999999
Q ss_pred HhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchh
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~ 556 (842)
+.+... ++.|..++|+....... . ..++|+||||+++..++... .....+.++++|||||+|.+.+ .++..++
T Consensus 156 ~~~~~~-gi~V~~~tGd~~~~~~~--~--~~~~IlVtTpEkld~llr~~-~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE 228 (1724)
T 4f92_B 156 KRLATY-GITVAELTGDHQLCKEE--I--SATQIIVCTPEKWDIITRKG-GERTYTQLVRLIILDEIHLLHD-DRGPVLE 228 (1724)
T ss_dssp HHHTTT-TCCEEECCSSCSSCCTT--G--GGCSEEEECHHHHHHHTTSS-TTHHHHTTEEEEEETTGGGGGS-TTHHHHH
T ss_pred HHHhhC-CCEEEEEECCCCCCccc--c--CCCCEEEECHHHHHHHHcCC-ccchhhcCcCEEEEecchhcCC-ccHHHHH
Confidence 988764 88999999987754322 1 34899999999985555432 2223467899999999998766 4555555
Q ss_pred hhhh-------cccccccceeecccCcchhhcc----ccceeeeecccccccccccccccccccCch---hhHHHHHHHH
Q 003178 557 NIVD-------CLPRRRQSLLFSATMPKELVLK----REHTYIDTVGLGSVETPVKIKQSCLVAPHE---LHFQILHHLL 622 (842)
Q Consensus 557 ~Il~-------~l~~~~q~il~SATl~~~l~~~----~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~---~k~~~L~~lL 622 (842)
.++. .+++..|+|++|||+|+...+. ... ......+.....|..+.+.++..... ..+..+...+
T Consensus 229 ~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~-~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~ 307 (1724)
T 4f92_B 229 ALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDP-AKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIV 307 (1724)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCH-HHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCC-CCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHH
Confidence 5543 3466789999999998753211 100 00011122333455666655443332 2223333333
Q ss_pred hhhhc-CCCCceEEEEecchhHHHHHHHHHHHH-------------------------------------hhhHHHHhhc
Q 003178 623 KEHIL-GTPDYKVIVFCSTGMVTSLLYLLLREM-------------------------------------KMNVREMYSR 664 (842)
Q Consensus 623 ~~~~~-~~~~~kiIVF~~s~~~~~~l~~~L~~~-------------------------------------~~~v~~lhg~ 664 (842)
...+. ...++++||||+|++.|+.++..|.+. ...+..+||+
T Consensus 308 ~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHag 387 (1724)
T 4f92_B 308 YEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAG 387 (1724)
T ss_dssp HHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSS
T ss_pred HHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCC
Confidence 22221 234568999999999999998888653 1236678999
Q ss_pred CcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEE----ec------CCCChHHHHHHhhcCCCCC--CCccee
Q 003178 665 KPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ----VG------IPPDREQYIHRLGRTGREG--KEGEGV 732 (842)
Q Consensus 665 ~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~----yd------~P~s~~~yiQRiGRaGR~G--~~G~~i 732 (842)
|++.+|..+.+.|++|.++|||||+++++|||+|++++||. |+ .|.++.+|.||+|||||.| ..|.++
T Consensus 388 L~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~i 467 (1724)
T 4f92_B 388 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGI 467 (1724)
T ss_dssp SCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEE
Confidence 99999999999999999999999999999999999999995 44 4578999999999999988 479999
Q ss_pred EEeccchhhhhc
Q 003178 733 LLLAPWEEYFLD 744 (842)
Q Consensus 733 ~ll~~~E~~~l~ 744 (842)
++..+.+..+..
T Consensus 468 i~~~~~~~~~~~ 479 (1724)
T 4f92_B 468 LITSHGELQYYL 479 (1724)
T ss_dssp EEEESTTCCHHH
T ss_pred EEecchhHHHHH
Confidence 998887754433
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.8e-39 Score=416.93 Aligned_cols=343 Identities=16% Similarity=0.200 Sum_probs=254.0
Q ss_pred CCchhHhhhcccceeeeeehhhhhhhhhhc-CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccc
Q 003178 386 ISPLTIKALTAAGYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (842)
Q Consensus 386 l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~-g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PT 464 (842)
+.....++|...+|..++|+|.++++.+++ +++++|+||||||||++|.+|+++.+.+.. +.++||++||
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~---------~~kavyi~P~ 981 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS---------EGRCVYITPM 981 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT---------TCCEEEECSC
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC---------CCEEEEEcCh
Confidence 345667778888999999999999999976 568999999999999999999999987642 2269999999
Q ss_pred hhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccc
Q 003178 465 RELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (842)
Q Consensus 465 ReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh 544 (842)
|+||.|+++.+.+.++...++.|..++|+..... ..+ ..++|+|||||++..++.+... ...+.++++||+||+|
T Consensus 982 raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~--~~~--~~~~IiV~TPEkld~llr~~~~-~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 982 EALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDL--KLL--GKGNIIISTPEKWDILSRRWKQ-RKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHH--HHH--HHCSEEEECHHHHHHHHTTTTT-CHHHHSCSEEEECCGG
T ss_pred HHHHHHHHHHHHHHhchhcCCEEEEEECCCCcch--hhc--CCCCEEEECHHHHHHHHhCccc-ccccceeeEEEeechh
Confidence 9999999999988776666889999999876432 222 2379999999998766654322 2346789999999999
Q ss_pred cccccccccchhhhhh-------cccccccceeecccCcchhhccc--cceeeeecccccccccccccccccccCc---h
Q 003178 545 HLLDLGFRKDVENIVD-------CLPRRRQSLLFSATMPKELVLKR--EHTYIDTVGLGSVETPVKIKQSCLVAPH---E 612 (842)
Q Consensus 545 ~lld~gf~~~i~~Il~-------~l~~~~q~il~SATl~~~l~~~~--~~~~i~~v~~~~~~~~~~l~~~~~~~~~---~ 612 (842)
.|.+. ++..+..++. .++++.|+|+||||+++.-.+.. .........+.....|..+..++...+. .
T Consensus 1057 ~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~ 1135 (1724)
T 4f92_B 1057 LIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQ 1135 (1724)
T ss_dssp GGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHH
T ss_pred hcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCch
Confidence 98874 4555544443 45678899999999987522110 0000001111222234444333222211 1
Q ss_pred hhH----HHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH----------------------------------
Q 003178 613 LHF----QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM---------------------------------- 654 (842)
Q Consensus 613 ~k~----~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~---------------------------------- 654 (842)
.++ ..+...+..+ .+.+++||||+|++.|+.++..|...
T Consensus 1136 ~~~~~~~~~~~~~i~~~---~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l 1212 (1724)
T 4f92_B 1136 TRLLSMAKPVYHAITKH---SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETL 1212 (1724)
T ss_dssp HHHHTTHHHHHHHHHHH---CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHH
T ss_pred hhhhhhcchHHHHHHHh---cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHH
Confidence 111 1223333333 35679999999999999988776432
Q ss_pred hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEE----------ecCCCChHHHHHHhhcCCC
Q 003178 655 KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ----------VGIPPDREQYIHRLGRTGR 724 (842)
Q Consensus 655 ~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~----------yd~P~s~~~yiQRiGRaGR 724 (842)
...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||. ...|.++.+|+||+|||||
T Consensus 1213 ~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR 1292 (1724)
T 4f92_B 1213 LNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR 1292 (1724)
T ss_dssp HTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCC
T ss_pred hCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccC
Confidence 234677999999999999999999999999999999999999999999993 3357789999999999999
Q ss_pred CCC--CcceeEEeccchhhhhccC
Q 003178 725 EGK--EGEGVLLLAPWEEYFLDDL 746 (842)
Q Consensus 725 ~G~--~G~~i~ll~~~E~~~l~~L 746 (842)
.|. .|.|++++.+.+..+++.+
T Consensus 1293 ~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1293 PLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp TTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred CCCCCceEEEEEecchHHHHHHHH
Confidence 996 7999999988877666554
No 40
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-39 Score=391.55 Aligned_cols=317 Identities=16% Similarity=0.219 Sum_probs=232.7
Q ss_pred hHhhhcccceeeeeehhhhhhhhhhcC------cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEecc
Q 003178 390 TIKALTAAGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463 (842)
Q Consensus 390 l~~~L~~~g~~~~t~iQ~~aI~~il~g------~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~P 463 (842)
+.+.+..++| .||++|.++|+.++.+ .+++++|+||||||++|++|++..+... .++||++|
T Consensus 358 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-----------~qvlvlaP 425 (780)
T 1gm5_A 358 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-----------FQTAFMVP 425 (780)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-----------SCEEEECS
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-----------CeEEEEeC
Confidence 3344567899 8999999999999875 5999999999999999999999877532 25999999
Q ss_pred chhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEecceeeee
Q 003178 464 TRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVL 540 (842)
Q Consensus 464 TReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVl 540 (842)
|++||.|+++.+.+++... ++.+..++|+...... ...+..+.++|+|+||+.|.+.+ .+.++++|||
T Consensus 426 tr~La~Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~--------~~~~l~lVVI 496 (780)
T 1gm5_A 426 TSILAIQHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV--------HFKNLGLVII 496 (780)
T ss_dssp CHHHHHHHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCC--------CCSCCCEEEE
T ss_pred cHHHHHHHHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhh--------hccCCceEEe
Confidence 9999999999999998654 6889999998765432 22344456899999999886532 3568999999
Q ss_pred cccccccccccccchhhhhhcccccccceeecccCcchhhccccceeeeeccccccc-ccccccccccccCchhhHHHHH
Q 003178 541 DEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVE-TPVKIKQSCLVAPHELHFQILH 619 (842)
Q Consensus 541 DEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~i~~v~~~~~~-~~~~l~~~~~~~~~~~k~~~L~ 619 (842)
||+|++.... ...+.......++++||||+.+...........+...+.... ....+... +.+ ..+...+.
T Consensus 497 DEaHr~g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~--~~~-~~~~~~l~ 568 (780)
T 1gm5_A 497 DEQHRFGVKQ-----REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTM--LVP-MDRVNEVY 568 (780)
T ss_dssp ESCCCC----------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEEC--CCC-SSTHHHHH
T ss_pred cccchhhHHH-----HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEE--Eec-cchHHHHH
Confidence 9999963321 122233345689999999986652211000000000000000 00112211 122 22333444
Q ss_pred HHHhhhhcCCCCceEEEEecch--------hHHHHHHHHHHH---HhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEec
Q 003178 620 HLLKEHILGTPDYKVIVFCSTG--------MVTSLLYLLLRE---MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTS 688 (842)
Q Consensus 620 ~lL~~~~~~~~~~kiIVF~~s~--------~~~~~l~~~L~~---~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaT 688 (842)
..+...+ ..+.+++|||+++ ..++.++..|.. .++.+..+||+|++.+|..+++.|++|+.+|||||
T Consensus 569 ~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT 646 (780)
T 1gm5_A 569 EFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVST 646 (780)
T ss_dssp HHHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCS
T ss_pred HHHHHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEEC
Confidence 5555443 3456899999976 456778888877 46789999999999999999999999999999999
Q ss_pred cccccCCCCCCcceeEEecCCC-ChHHHHHHhhcCCCCCCCcceeEEecc
Q 003178 689 DVSARGMDYPDVTSVVQVGIPP-DREQYIHRLGRTGREGKEGEGVLLLAP 737 (842)
Q Consensus 689 dv~arGlDip~V~~VI~yd~P~-s~~~yiQRiGRaGR~G~~G~~i~ll~~ 737 (842)
+++++|||+|++++||+++.|. +...|.||+||+||.|+.|.|++++.+
T Consensus 647 ~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 647 TVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp SCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 9999999999999999999996 788999999999999999999999875
No 41
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3e-39 Score=370.97 Aligned_cols=285 Identities=18% Similarity=0.177 Sum_probs=210.8
Q ss_pred ceeeeeehhhhhhhhhhcCcce-EEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 398 GYIQMTRVQEATLSACLEGKDA-VVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 398 g~~~~t~iQ~~aI~~il~g~dv-ii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
|+.+++|+|+ +||.+++++++ +++||||||||++|++|++.++.... .++||++|||+||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~----------~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRR----------LRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTT----------CCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcC----------CcEEEECCCHHHHHHHHHHhc
Confidence 6788999986 79999999887 89999999999999999998776532 369999999999999998764
Q ss_pred HhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchh
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~ 556 (842)
++.+........ .....+..|.++|++.|.+.+... ..+.++++|||||||++ +.++...+.
T Consensus 70 -------g~~v~~~~~~~~------~~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~-~~~~~~~~~ 131 (451)
T 2jlq_A 70 -------GLPIRYQTPAVK------SDHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFT-DPCSVAARG 131 (451)
T ss_dssp -------TSCEEECCTTCS------CCCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTCC-SHHHHHHHH
T ss_pred -------Cceeeeeecccc------ccCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCccC-CcchHHHHH
Confidence 222222111110 011233578999999998887654 34678999999999987 444433333
Q ss_pred hhhh-cccccccceeecccCcchhhccc--cceeeeecccccccccccccccccccCchhhHHHHHHHHhhhhcCCCCce
Q 003178 557 NIVD-CLPRRRQSLLFSATMPKELVLKR--EHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYK 633 (842)
Q Consensus 557 ~Il~-~l~~~~q~il~SATl~~~l~~~~--~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~k 633 (842)
.+.. ..+++.|+++||||++..+.... ....+... ...+ . ..+. .+...+.. ..++
T Consensus 132 ~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~----~~~p--~-~~~~---------~~~~~l~~-----~~~~ 190 (451)
T 2jlq_A 132 YISTRVEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIE----REIP--E-RSWN---------TGFDWITD-----YQGK 190 (451)
T ss_dssp HHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSCEEEEE----CCCC--S-SCCS---------SSCHHHHH-----CCSC
T ss_pred HHHHhhcCCCceEEEEccCCCccchhhhcCCCceEecC----ccCC--c-hhhH---------HHHHHHHh-----CCCC
Confidence 3322 23457899999999987642111 11111110 0001 0 1110 01122222 2458
Q ss_pred EEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEec------
Q 003178 634 VIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVG------ 707 (842)
Q Consensus 634 iIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd------ 707 (842)
+||||+|++.++.++..|+..++.+..+|+.+. ..+++.|++|+.+|||||+++++|||+|+ ++||+||
T Consensus 191 ~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~ 265 (451)
T 2jlq_A 191 TVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPV 265 (451)
T ss_dssp EEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccc
Confidence 999999999999999999999999999998754 57899999999999999999999999999 9999999
Q ss_pred --------------CCCChHHHHHHhhcCCCCCC-CcceeEEecc
Q 003178 708 --------------IPPDREQYIHRLGRTGREGK-EGEGVLLLAP 737 (842)
Q Consensus 708 --------------~P~s~~~yiQRiGRaGR~G~-~G~~i~ll~~ 737 (842)
.|.+..+|+||+|||||.|+ .|.|++|+..
T Consensus 266 ~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 266 ILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8888888654
No 42
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.1e-39 Score=389.42 Aligned_cols=296 Identities=16% Similarity=0.202 Sum_probs=214.6
Q ss_pred Hhhhccccee-----eeeehhh-----hhhhhhh------cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccC
Q 003178 391 IKALTAAGYI-----QMTRVQE-----ATLSACL------EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP 454 (842)
Q Consensus 391 ~~~L~~~g~~-----~~t~iQ~-----~aI~~il------~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~ 454 (842)
+.+|..+||. .||++|+ ++||.++ .++|++++|+||||||++|++|+++.+....
T Consensus 200 ~~~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~--------- 270 (673)
T 2wv9_A 200 IIGLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKR--------- 270 (673)
T ss_dssp EEEEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTT---------
T ss_pred eEEeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC---------
Confidence 4577888999 9999999 9999988 8999999999999999999999998876532
Q ss_pred ceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCc-----e
Q 003178 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL-----S 529 (842)
Q Consensus 455 ~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~-----~ 529 (842)
.++|||+||++||.|+++.+..+ ++ .. ....+ -.++||+++++++...... .
T Consensus 271 -~~~lilaPTr~La~Q~~~~l~~~-----~i--~~---------~~~~l------~~v~tp~~ll~~l~~~~l~~~l~~~ 327 (673)
T 2wv9_A 271 -LRTAVLAPTRVVAAEMAEALRGL-----PV--RY---------LTPAV------QREHSGNEIVDVMCHATLTHRLMSP 327 (673)
T ss_dssp -CCEEEEESSHHHHHHHHHHTTTS-----CC--EE---------CCC---------CCCCSCCCEEEEEHHHHHHHHHSS
T ss_pred -CcEEEEccHHHHHHHHHHHHhcC-----Ce--ee---------ecccc------cccCCHHHHHHHHHhhhhHHHHhcc
Confidence 36999999999999999877643 11 11 00001 1288999888776543110 0
Q ss_pred EEEecceeeeecccccccccccccchhhhhhccc-ccccceeecccCcchhhcccc-ceeeeeccccccccccccccccc
Q 003178 530 VRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP-RRRQSLLFSATMPKELVLKRE-HTYIDTVGLGSVETPVKIKQSCL 607 (842)
Q Consensus 530 ~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~-~~~q~il~SATl~~~l~~~~~-~~~i~~v~~~~~~~~~~l~~~~~ 607 (842)
..+.++++|||||||++ +..+...+..+...++ ..+|+++||||++..+..... ...+. .+...+
T Consensus 328 ~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~~~~i~-----------~v~~~~- 394 (673)
T 2wv9_A 328 LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDTNSPVH-----------DVSSEI- 394 (673)
T ss_dssp SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSCEE-----------EEECCC-
T ss_pred cccccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcccCCceE-----------EEeeec-
Confidence 14678999999999998 2222223333333333 578999999999876432111 00000 000000
Q ss_pred ccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEe
Q 003178 608 VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVT 687 (842)
Q Consensus 608 ~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVa 687 (842)
+.......+ ..+.. ..+++||||++++.++.++..|+..++.+..+|| .+|..+++.|++|+.+||||
T Consensus 395 --~~~~~~~~l-~~l~~-----~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~VLVa 462 (673)
T 2wv9_A 395 --PDRAWSSGF-EWITD-----YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWDFVIT 462 (673)
T ss_dssp --CSSCCSSCC-HHHHS-----CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCSEEEE
T ss_pred --CHHHHHHHH-HHHHh-----CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCceEEEE
Confidence 111111111 11221 3579999999999999999999999999999999 37999999999999999999
Q ss_pred ccccccCCCCCCcceeEE--------------------ecCCCChHHHHHHhhcCCCC-CCCcceeEEe---ccchhhhh
Q 003178 688 SDVSARGMDYPDVTSVVQ--------------------VGIPPDREQYIHRLGRTGRE-GKEGEGVLLL---APWEEYFL 743 (842)
Q Consensus 688 Tdv~arGlDip~V~~VI~--------------------yd~P~s~~~yiQRiGRaGR~-G~~G~~i~ll---~~~E~~~l 743 (842)
|+++++|||+| +++||+ |+.|.+.++|+||+|||||. |+.|.|++|+ .+.|..++
T Consensus 463 Tdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l 541 (673)
T 2wv9_A 463 TDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLA 541 (673)
T ss_dssp CGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBH
T ss_pred CchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHH
Confidence 99999999999 999998 67899999999999999999 7899999996 45554443
Q ss_pred c
Q 003178 744 D 744 (842)
Q Consensus 744 ~ 744 (842)
+
T Consensus 542 ~ 542 (673)
T 2wv9_A 542 H 542 (673)
T ss_dssp H
T ss_pred H
Confidence 3
No 43
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=7.8e-39 Score=388.56 Aligned_cols=335 Identities=16% Similarity=0.166 Sum_probs=245.2
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhhhhc-CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~-g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
.+|.++++++.+.+.+...+ ..|+++|+++|+.++. +++++++||||||||+ ++|++ +....... ..+.+
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~l--l~~~~~~~----~~g~~ 142 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQF--VLFDEMPH----LENTQ 142 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHH--HHHHHCGG----GGTCE
T ss_pred CCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHH--HHHhcccc----CCCce
Confidence 56999999999999999888 6799999999998776 5679999999999999 78877 33221110 11346
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
++|++|+|+||.|+++.+...++...+.. +|... .........++|+|+|||+|.+++... ..+.++++
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~----vG~~i---~~~~~~~~~~~I~v~T~G~l~r~l~~~----~~l~~~~~ 211 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEE----VGYSI---RFENKTSNKTILKYMTDGMLLREAMED----HDLSRYSC 211 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTT----EEEEE---TTEEECCTTCSEEEEEHHHHHHHHHHS----TTCTTEEE
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhhe----eccee---ccccccCCCCCEEEECHHHHHHHHhhC----ccccCCCE
Confidence 99999999999999988776653322222 22211 111112235799999999999877654 23678999
Q ss_pred eeeccccc-cccccc-ccchhhhhhcccccccceeecccCcchhhc--cccceeeeecccccccccccccccccccCchh
Q 003178 538 LVLDEADH-LLDLGF-RKDVENIVDCLPRRRQSLLFSATMPKELVL--KREHTYIDTVGLGSVETPVKIKQSCLVAPHEL 613 (842)
Q Consensus 538 lVlDEAh~-lld~gf-~~~i~~Il~~l~~~~q~il~SATl~~~l~~--~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~ 613 (842)
|||||||. .++..+ ...+..+... .+..|+++||||++..... ......+. .. .....+.+++...+...
T Consensus 212 lIlDEah~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~~l~~~~~~~~vi~---v~--gr~~pv~~~~~~~~~~~ 285 (773)
T 2xau_A 212 IILDEAHERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDAEKFQRYFNDAPLLA---VP--GRTYPVELYYTPEFQRD 285 (773)
T ss_dssp EEECSGGGCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCHHHHHHTTSCCEEE---CC--CCCCCEEEECCSSCCSC
T ss_pred EEecCccccccchHHHHHHHHHHHHh-CCCceEEEEeccccHHHHHHHhcCCCccc---cc--CcccceEEEEecCCchh
Confidence 99999995 666332 2223333333 3478999999999755211 11111111 11 11233555555555544
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHH-----------HhhhHHHHhhcCcchhhhhhhHHHh----
Q 003178 614 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLRE-----------MKMNVREMYSRKPQLYRDRISEEFR---- 678 (842)
Q Consensus 614 k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~-----------~~~~v~~lhg~~~~~~R~~v~~~F~---- 678 (842)
+...+...+.........+++||||+++.+++.++..|.. .++.+..+||+|++.+|..+++.|+
T Consensus 286 ~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~ 365 (773)
T 2xau_A 286 YLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHN 365 (773)
T ss_dssp HHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccC
Confidence 4443333333333233567999999999999999999985 3567899999999999999999999
Q ss_pred -hcceEEEEeccccccCCCCCCcceeEEecC------------------CCChHHHHHHhhcCCCCCCCcceeEEeccch
Q 003178 679 -ASKRLILVTSDVSARGMDYPDVTSVVQVGI------------------PPDREQYIHRLGRTGREGKEGEGVLLLAPWE 739 (842)
Q Consensus 679 -~g~~~VLVaTdv~arGlDip~V~~VI~yd~------------------P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E 739 (842)
+|..+|||||+++++|||||+|++||++|+ |.+..+|+||+|||||. .+|.|++|+++.+
T Consensus 366 ~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~ 444 (773)
T 2xau_A 366 GRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 444 (773)
T ss_dssp SSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHH
T ss_pred CCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHH
Confidence 999999999999999999999999999888 89999999999999999 7999999998765
Q ss_pred h
Q 003178 740 E 740 (842)
Q Consensus 740 ~ 740 (842)
.
T Consensus 445 ~ 445 (773)
T 2xau_A 445 F 445 (773)
T ss_dssp H
T ss_pred h
Confidence 4
No 44
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=9.3e-39 Score=365.61 Aligned_cols=276 Identities=17% Similarity=0.187 Sum_probs=193.8
Q ss_pred hhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEe
Q 003178 412 ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491 (842)
Q Consensus 412 ~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~ 491 (842)
++++|+|++++||||||||++|++|+++.+.... .++||++||++||.|+++.+..+ .+....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~----------~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~~ 66 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR----------LRTLVLAPTRVVLSEMKEAFHGL-------DVKFHT 66 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT----------CCEEEEESSHHHHHHHHHHTTTS-------CEEEES
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC----------CeEEEEcchHHHHHHHHHHHhcC-------CeEEec
Confidence 5678999999999999999999999998876532 36999999999999999887633 121110
Q ss_pred cceeeeeccccccCCCceE-EecCccchhhhccccCC-----ceEEEecceeeeecccccccccccccchhhhhhcc-cc
Q 003178 492 GGTRFKVDQRRLESDPCQI-LVATPGRLLDHIENKSG-----LSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL-PR 564 (842)
Q Consensus 492 Gg~~~~~~~~~l~~~~~~I-IVaTPgrLl~~L~~~~~-----~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l-~~ 564 (842)
..+ .|+||+++++++..... ....+.++++|||||||++ +.++...+..+...+ +.
T Consensus 67 ----------------~~~~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~ 129 (440)
T 1yks_A 67 ----------------QAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARAN 129 (440)
T ss_dssp ----------------SCCCCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTT
T ss_pred ----------------ccceeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccC
Confidence 011 49999999887764310 0112678999999999998 433333333333333 35
Q ss_pred cccceeecccCcchhhcccc-ceeeeecccccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhH
Q 003178 565 RRQSLLFSATMPKELVLKRE-HTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMV 643 (842)
Q Consensus 565 ~~q~il~SATl~~~l~~~~~-~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~ 643 (842)
.+|+++||||+++.+..... ...+. .+... ++.......+ ..+.. .++++||||++++.
T Consensus 130 ~~~~l~~SAT~~~~~~~~~~~~~~~~-----------~~~~~---~~~~~~~~~~-~~l~~-----~~~~~lVF~~s~~~ 189 (440)
T 1yks_A 130 ESATILMTATPPGTSDEFPHSNGEIE-----------DVQTD---IPSEPWNTGH-DWILA-----DKRPTAWFLPSIRA 189 (440)
T ss_dssp SCEEEEECSSCTTCCCSSCCCSSCEE-----------EEECC---CCSSCCSSSC-HHHHH-----CCSCEEEECSCHHH
T ss_pred CceEEEEeCCCCchhhhhhhcCCCee-----------Eeeec---cChHHHHHHH-HHHHh-----cCCCEEEEeCCHHH
Confidence 78999999999876421111 00000 01111 1111111111 12222 25699999999999
Q ss_pred HHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEE------------------
Q 003178 644 TSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ------------------ 705 (842)
Q Consensus 644 ~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~------------------ 705 (842)
++.++..|+..++.+..+|| .+|..+++.|++|+.+|||||+++++|||+| +++||+
T Consensus 190 a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi 264 (440)
T 1yks_A 190 ANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAI 264 (440)
T ss_dssp HHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEE
T ss_pred HHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceee
Confidence 99999999999999999999 4689999999999999999999999999999 999996
Q ss_pred -ecCCCChHHHHHHhhcCCCC-CCCcceeEEe---ccchhhhhccC
Q 003178 706 -VGIPPDREQYIHRLGRTGRE-GKEGEGVLLL---APWEEYFLDDL 746 (842)
Q Consensus 706 -yd~P~s~~~yiQRiGRaGR~-G~~G~~i~ll---~~~E~~~l~~L 746 (842)
|+.|.+.++|+||+|||||. |+.|.|++|+ ++.+..+++.+
T Consensus 265 ~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l 310 (440)
T 1yks_A 265 KGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWL 310 (440)
T ss_dssp EEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHH
T ss_pred ccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhh
Confidence 89999999999999999997 6899999997 55665555444
No 45
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=4.5e-38 Score=366.18 Aligned_cols=312 Identities=14% Similarity=0.109 Sum_probs=233.9
Q ss_pred ceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH
Q 003178 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (842)
Q Consensus 398 g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~ 477 (842)
+...|+++|.++++.++.+++++++++||+|||++|++|++..+.... .++|||+||++|+.|+++.+.+
T Consensus 110 ~~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~----------~~vlvl~P~~~L~~Q~~~~~~~ 179 (510)
T 2oca_A 110 KRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE----------GKILIIVPTTALTTQMADDFVD 179 (510)
T ss_dssp EEECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS----------SEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC----------CeEEEEECcHHHHHHHHHHHHH
Confidence 355799999999999999999999999999999999998887664321 1699999999999999999988
Q ss_pred hhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhh
Q 003178 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557 (842)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~ 557 (842)
+... +++.+..+.|+...... ....++|+|+||+.|..... ..+.++++|||||||++.. ..+..
T Consensus 180 ~~~~-~~~~v~~~~~~~~~~~~----~~~~~~I~i~T~~~l~~~~~------~~~~~~~liIiDE~H~~~~----~~~~~ 244 (510)
T 2oca_A 180 YRLF-SHAMIKKIGGGASKDDK----YKNDAPVVVGTWQTVVKQPK------EWFSQFGMMMNDECHLATG----KSISS 244 (510)
T ss_dssp TTSS-CGGGEEECGGGCCTTGG----GCTTCSEEEEEHHHHTTSCG------GGGGGEEEEEEETGGGCCH----HHHHH
T ss_pred hhcC-CccceEEEecCCccccc----cccCCcEEEEeHHHHhhchh------hhhhcCCEEEEECCcCCCc----ccHHH
Confidence 7433 35678888887654322 23458999999998875421 2246789999999999876 34667
Q ss_pred hhhcccccccceeecccCcchhhc------cccceeeeeccccc-----cccc--------------------ccccc-c
Q 003178 558 IVDCLPRRRQSLLFSATMPKELVL------KREHTYIDTVGLGS-----VETP--------------------VKIKQ-S 605 (842)
Q Consensus 558 Il~~l~~~~q~il~SATl~~~l~~------~~~~~~i~~v~~~~-----~~~~--------------------~~l~~-~ 605 (842)
++..+++..++++||||++..... ........ +.... ...+ ..+.+ .
T Consensus 245 il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (510)
T 2oca_A 245 IISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKP-VTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEI 323 (510)
T ss_dssp HGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECC-CCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHH
T ss_pred HHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEe-eCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHH
Confidence 777777788999999999765211 00000000 00000 0000 00111 0
Q ss_pred ccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEE
Q 003178 606 CLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLIL 685 (842)
Q Consensus 606 ~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VL 685 (842)
........+...+..++..... ..+.++||||+ ...+..++..|...+..+..+||++++.+|..+++.|++|+..||
T Consensus 324 ~~~~~~~~~~~~l~~~l~~~~~-~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vL 401 (510)
T 2oca_A 324 KIITGLSKRNKWIAKLAIKLAQ-KDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIII 401 (510)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHT-TTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEE
T ss_pred HHHhccHHHHHHHHHHHHHHHh-cCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEE
Confidence 1112223344556666665543 23456677776 888888999999887799999999999999999999999999999
Q ss_pred Eec-cccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEecc
Q 003178 686 VTS-DVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAP 737 (842)
Q Consensus 686 VaT-dv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~ 737 (842)
||| +++++|+|+|++++||+++.|.++..|+||+||+||.|..|.+++++.-
T Consensus 402 v~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~ 454 (510)
T 2oca_A 402 VASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDL 454 (510)
T ss_dssp EEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEE
T ss_pred EEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEe
Confidence 999 9999999999999999999999999999999999999987767777653
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=8.8e-38 Score=368.57 Aligned_cols=279 Identities=19% Similarity=0.208 Sum_probs=211.2
Q ss_pred eeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhh
Q 003178 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~ 479 (842)
..+++.|.++++.+..+++++++|+||||||++|.+|+++. +.++||++|||+||.|+++.+.+.+
T Consensus 216 lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------------g~~vLVl~PTReLA~Qia~~l~~~~ 281 (666)
T 3o8b_A 216 SPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------------GYKVLVLNPSVAATLGFGAYMSKAH 281 (666)
T ss_dssp SCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------------TCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------------CCeEEEEcchHHHHHHHHHHHHHHh
Confidence 34566777777777789999999999999999999888741 1259999999999999999887776
Q ss_pred hcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhh
Q 003178 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559 (842)
Q Consensus 480 ~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il 559 (842)
. ..+...+|+... ..+++|+|+|||+|+. .. ...+.++++||||||| +++.+|...+..|+
T Consensus 282 g----~~vg~~vG~~~~--------~~~~~IlV~TPGrLl~---~~---~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il 342 (666)
T 3o8b_A 282 G----IDPNIRTGVRTI--------TTGAPVTYSTYGKFLA---DG---GCSGGAYDIIICDECH-STDSTTILGIGTVL 342 (666)
T ss_dssp S----CCCEEECSSCEE--------CCCCSEEEEEHHHHHH---TT---SCCTTSCSEEEETTTT-CCSHHHHHHHHHHH
T ss_pred C----CCeeEEECcEec--------cCCCCEEEECcHHHHh---CC---CcccCcccEEEEccch-hcCccHHHHHHHHH
Confidence 3 345666776542 3448999999999842 22 2346689999999995 56778888899999
Q ss_pred hccccccc--ceeecccCcchhhccccceeeeecccccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEE
Q 003178 560 DCLPRRRQ--SLLFSATMPKELVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVF 637 (842)
Q Consensus 560 ~~l~~~~q--~il~SATl~~~l~~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF 637 (842)
..++..+| +++||||++..+...... +..+...... . + .. ...... +. ....+++|||
T Consensus 343 ~~l~~~~~~llil~SAT~~~~i~~~~p~--i~~v~~~~~~-~--i-~~---~~~~~~-------l~----~~~~~~vLVF 402 (666)
T 3o8b_A 343 DQAETAGARLVVLATATPPGSVTVPHPN--IEEVALSNTG-E--I-PF---YGKAIP-------IE----AIRGGRHLIF 402 (666)
T ss_dssp HHTTTTTCSEEEEEESSCTTCCCCCCTT--EEEEECBSCS-S--E-EE---TTEEEC-------GG----GSSSSEEEEE
T ss_pred HhhhhcCCceEEEECCCCCcccccCCcc--eEEEeecccc-h--h-HH---HHhhhh-------hh----hccCCcEEEE
Confidence 99888777 577799999864321111 1011000000 0 0 00 000000 01 1246799999
Q ss_pred ecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeE----------Eec
Q 003178 638 CSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVV----------QVG 707 (842)
Q Consensus 638 ~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI----------~yd 707 (842)
|+|++.++.+++.|++.++.+..+||+|++.+ |+++..+|||||+++++|||+| |++|| |||
T Consensus 403 v~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyD 474 (666)
T 3o8b_A 403 CHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFS 474 (666)
T ss_dssp CSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECC
T ss_pred eCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccc
Confidence 99999999999999999999999999999875 4456679999999999999997 99998 677
Q ss_pred -----------CCCChHHHHHHhhcCCCCCCCcceeEEeccchhh
Q 003178 708 -----------IPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEY 741 (842)
Q Consensus 708 -----------~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~ 741 (842)
.|.+.++|+||+||||| |++|. ++|+++.|..
T Consensus 475 ydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 475 LDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp CSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred cccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 89999999999999999 99999 9999887654
No 47
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.5e-37 Score=355.67 Aligned_cols=281 Identities=17% Similarity=0.198 Sum_probs=193.4
Q ss_pred ceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH
Q 003178 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (842)
Q Consensus 398 g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~ 477 (842)
|..++..+| ...+..+++++++||||||||++|++|+++.+.... .++||++|||+||.|+++.+.
T Consensus 6 g~~q~~~~~---~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~----------~~~lvl~Ptr~La~Q~~~~l~- 71 (459)
T 2z83_A 6 GGQQMGRGS---PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQR----------LRTAVLAPTRVVAAEMAEALR- 71 (459)
T ss_dssp ------------CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTT----------CCEEEEECSHHHHHHHHHHTT-
T ss_pred cHHHHHHHH---HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCC----------CcEEEECchHHHHHHHHHHhc-
Confidence 344444444 445677899999999999999999999998886532 369999999999999998875
Q ss_pred hhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccc-----ccccccc
Q 003178 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH-----LLDLGFR 552 (842)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~-----lld~gf~ 552 (842)
++.+....+..... ...+..+.++|.+.+...+... ..+.++++|||||||+ ++.++|.
T Consensus 72 ------g~~v~~~~~~~~~~------~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iViDEaH~~~~~~~~~~~~~ 135 (459)
T 2z83_A 72 ------GLPVRYQTSAVQRE------HQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVMDEAHFTDPASIAARGYI 135 (459)
T ss_dssp ------TSCEEECC--------------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEESSTTCCSHHHHHHHHHH
T ss_pred ------CceEeEEecccccC------CCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEEECCccCCchhhHHHHHH
Confidence 22222211111100 0112345667777766555443 3467899999999998 5555554
Q ss_pred cchhhhhhcccccccceeecccCcchhhcccc-ceeeeecccccccccccccccccccCchhhHHHHHHHHhhhhcCCCC
Q 003178 553 KDVENIVDCLPRRRQSLLFSATMPKELVLKRE-HTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPD 631 (842)
Q Consensus 553 ~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~-~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~ 631 (842)
..+. .++..|+++||||++..+..... ...+..+ .+.+........ ..++.. ..
T Consensus 136 ~~~~-----~~~~~~~il~SAT~~~~~~~~~~~~~pi~~~-----------~~~~~~~~~~~~----~~~l~~-----~~ 190 (459)
T 2z83_A 136 ATKV-----ELGEAAAIFMTATPPGTTDPFPDSNAPIHDL-----------QDEIPDRAWSSG----YEWITE-----YA 190 (459)
T ss_dssp HHHH-----HTTSCEEEEECSSCTTCCCSSCCCSSCEEEE-----------ECCCCSSCCSSC----CHHHHH-----CC
T ss_pred HHHh-----ccCCccEEEEEcCCCcchhhhccCCCCeEEe-----------cccCCcchhHHH----HHHHHh-----cC
Confidence 3322 23578999999999976432111 0000000 000000000111 122222 25
Q ss_pred ceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEE------
Q 003178 632 YKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ------ 705 (842)
Q Consensus 632 ~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~------ 705 (842)
+++||||+++..++.++..|+..++.+..+|+. +|..+++.|++|+.+|||||+++++|||+|+ ++||+
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~ 265 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVK 265 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECC
T ss_pred CCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccc
Confidence 689999999999999999999999999999984 7889999999999999999999999999999 99999
Q ss_pred --------------ecCCCChHHHHHHhhcCCCCCC-CcceeEEeccc
Q 003178 706 --------------VGIPPDREQYIHRLGRTGREGK-EGEGVLLLAPW 738 (842)
Q Consensus 706 --------------yd~P~s~~~yiQRiGRaGR~G~-~G~~i~ll~~~ 738 (842)
|+.|.+..+|+||+|||||.|. .|.|++|+++.
T Consensus 266 ~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 266 PTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 99999999875
No 48
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.9e-36 Score=381.50 Aligned_cols=322 Identities=16% Similarity=0.134 Sum_probs=240.0
Q ss_pred CCCchhHhhhc-ccceeeeeehhhhhhhhhhc----Cc--ceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 385 GISPLTIKALT-AAGYIQMTRVQEATLSACLE----GK--DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 385 ~l~~~l~~~L~-~~g~~~~t~iQ~~aI~~il~----g~--dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
+++....+.+. .++|. +||+|.++|+.++. ++ |++++++||+|||++|+++++..+.. +.+
T Consensus 587 ~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-----------g~~ 654 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-----------HKQ 654 (1151)
T ss_dssp CCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-----------TCE
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-----------CCe
Confidence 44555555553 56886 69999999999987 66 99999999999999999888865432 227
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEec
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~ 534 (842)
+||++||++||.|+++.+.+.+... ++.+..+++....... ...+..+.++|+|+||+.|... ..+.+
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~--------~~~~~ 725 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD--------VKFKD 725 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSC--------CCCSS
T ss_pred EEEEechHHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCC--------ccccc
Confidence 9999999999999999999887654 5777777765443221 2334445689999999876432 23568
Q ss_pred ceeeeecccccccccccccchhhhhhcccccccceeecccCcchhhcccccee--eeecccccccccccccccccccCch
Q 003178 535 LKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTY--IDTVGLGSVETPVKIKQSCLVAPHE 612 (842)
Q Consensus 535 l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~~~~~~~~--i~~v~~~~~~~~~~l~~~~~~~~~~ 612 (842)
+++|||||||++ ......++..++...++++||||+++.......... ...+.... .....+..++...
T Consensus 726 l~lvIiDEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~-~~r~~i~~~~~~~--- 796 (1151)
T 2eyq_A 726 LGLLIVDEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP-ARRLAVKTFVREY--- 796 (1151)
T ss_dssp EEEEEEESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCC-CBCBCEEEEEEEC---
T ss_pred cceEEEechHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCC-CCccccEEEEecC---
Confidence 899999999994 344556667777789999999998665211100000 11111000 0011122222111
Q ss_pred hhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH--hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc
Q 003178 613 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 690 (842)
Q Consensus 613 ~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv 690 (842)
........++... ..+++++|||+++..++.++..|++. ++.+..+||+|++.+|..+++.|++|+.+|||||++
T Consensus 797 ~~~~i~~~il~~l---~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v 873 (1151)
T 2eyq_A 797 DSMVVREAILREI---LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI 873 (1151)
T ss_dssp CHHHHHHHHHHHH---TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESST
T ss_pred CHHHHHHHHHHHH---hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCc
Confidence 1222233333333 24679999999999999999999988 788999999999999999999999999999999999
Q ss_pred cccCCCCCCcceeEEecC-CCChHHHHHHhhcCCCCCCCcceeEEeccch
Q 003178 691 SARGMDYPDVTSVVQVGI-PPDREQYIHRLGRTGREGKEGEGVLLLAPWE 739 (842)
Q Consensus 691 ~arGlDip~V~~VI~yd~-P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E 739 (842)
+++|||+|++++||+++. +.+..+|+||+||+||.|+.|.|++++.+.+
T Consensus 874 ~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 874 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred ceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 999999999999999998 5689999999999999999999999987643
No 49
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=4.9e-36 Score=345.64 Aligned_cols=285 Identities=24% Similarity=0.265 Sum_probs=213.6
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.|+++|.++++.++.+++++++++||+|||++|+.++... . .++|||+||++|+.|+++++.++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~----------~~~Lvl~P~~~L~~Q~~~~~~~~-- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----S----------TPTLIVVPTLALAEQWKERLGIF-- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----C----------SCEEEEESSHHHHHHHHHHGGGG--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----C----------CCEEEEECCHHHHHHHHHHHHhC--
Confidence 6999999999999999999999999999999998887643 1 15899999999999999998883
Q ss_pred cCCcee-EEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhh
Q 003178 481 NHDGIG-VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559 (842)
Q Consensus 481 ~~~~i~-v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il 559 (842)
++. +..+.|+... .++|+|+||+.|...+..- ..++++|||||||++.+.+|.. ++
T Consensus 157 ---~~~~v~~~~g~~~~----------~~~Ivv~T~~~l~~~~~~~------~~~~~liIvDEaH~~~~~~~~~----~~ 213 (472)
T 2fwr_A 157 ---GEEYVGEFSGRIKE----------LKPLTVSTYDSAYVNAEKL------GNRFMLLIFDEVHHLPAESYVQ----IA 213 (472)
T ss_dssp ---CGGGEEEBSSSCBC----------CCSEEEEEHHHHHHTHHHH------TTTCSEEEEETGGGTTSTTTHH----HH
T ss_pred ---CCcceEEECCCcCC----------cCCEEEEEcHHHHHHHHHh------cCCCCEEEEECCcCCCChHHHH----HH
Confidence 566 7777776542 2689999999998766421 1358999999999998876653 44
Q ss_pred hcccccccceeecccCcchh--------------------hccc----cceeee-ecccccc------------------
Q 003178 560 DCLPRRRQSLLFSATMPKEL--------------------VLKR----EHTYID-TVGLGSV------------------ 596 (842)
Q Consensus 560 ~~l~~~~q~il~SATl~~~l--------------------~~~~----~~~~i~-~v~~~~~------------------ 596 (842)
..+ +..+++++|||+.... .+.. ...... .+.....
T Consensus 214 ~~~-~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 292 (472)
T 2fwr_A 214 QMS-IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRA 292 (472)
T ss_dssp HTC-CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSS
T ss_pred Hhc-CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 444 3567899999987320 0000 000000 0000000
Q ss_pred -----cccccccccc---------------------cccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHH
Q 003178 597 -----ETPVKIKQSC---------------------LVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLL 650 (842)
Q Consensus 597 -----~~~~~l~~~~---------------------~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~ 650 (842)
.....+.+.+ +.+....+...+..++..+ .+.++||||++...++.++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~----~~~k~lvF~~~~~~~~~l~~~ 368 (472)
T 2fwr_A 293 RGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH----RKDKIIIFTRHNELVYRISKV 368 (472)
T ss_dssp CCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT----SSSCBCCBCSCHHHHHHHHHH
T ss_pred cCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC----CCCcEEEEECCHHHHHHHHHH
Confidence 0000011110 0122345666777777662 567999999999999999988
Q ss_pred HHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCC-c
Q 003178 651 LREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKE-G 729 (842)
Q Consensus 651 L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~-G 729 (842)
|. +..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|+.|.++..|+||+||+||.|.. +
T Consensus 369 l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~ 443 (472)
T 2fwr_A 369 FL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKK 443 (472)
T ss_dssp TT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTC
T ss_pred hC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCc
Confidence 74 67899999999999999999999999999999999999999999999999999999999999999999954 4
Q ss_pred ceeEE
Q 003178 730 EGVLL 734 (842)
Q Consensus 730 ~~i~l 734 (842)
.++++
T Consensus 444 ~~~i~ 448 (472)
T 2fwr_A 444 EAVLY 448 (472)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 55443
No 50
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.9e-35 Score=350.58 Aligned_cols=295 Identities=16% Similarity=0.147 Sum_probs=212.1
Q ss_pred CchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchh
Q 003178 387 SPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE 466 (842)
Q Consensus 387 ~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTRe 466 (842)
+.+.++++..+.+ |.|.......+.+++++++||||||||+ ++++.+.... .++|++|||+
T Consensus 130 ~~d~l~~i~dl~~----p~~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~~-----------~gl~l~PtR~ 190 (677)
T 3rc3_A 130 CKDDLRKISDLRI----PPNWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSAK-----------SGVYCGPLKL 190 (677)
T ss_dssp CHHHHHHHTBCCC----GGGGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHSS-----------SEEEEESSHH
T ss_pred CHHHHHHHhhccC----hhhhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhcC-----------CeEEEeCHHH
Confidence 4444555554443 4555555667889999999999999998 4555565432 2589999999
Q ss_pred HHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccc
Q 003178 467 LASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL 546 (842)
Q Consensus 467 LA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~l 546 (842)
||.|+++.+.+. ++.+..++|+.. ++++|||++.+++............+++|||||||++
T Consensus 191 LA~Qi~~~l~~~-----g~~v~lltG~~~--------------~iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l 251 (677)
T 3rc3_A 191 LAHEIFEKSNAA-----GVPCDLVTGEER--------------VTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMI 251 (677)
T ss_dssp HHHHHHHHHHHT-----TCCEEEECSSCE--------------ECCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGG
T ss_pred HHHHHHHHHHhc-----CCcEEEEECCee--------------EEecCCCcccceeEecHhHhhhcccCCEEEEecceec
Confidence 999999998875 567888888754 3456666665555433211112356799999999999
Q ss_pred cccccccchhhhhhccc-ccccceeecccCcchhhcccc-ceeeeecccccccccccccccccccCchhhHHHHHHHHhh
Q 003178 547 LDLGFRKDVENIVDCLP-RRRQSLLFSATMPKELVLKRE-HTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKE 624 (842)
Q Consensus 547 ld~gf~~~i~~Il~~l~-~~~q~il~SATl~~~l~~~~~-~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~ 624 (842)
++.+|...+..++..++ +..+++++|||.+.-..+... ...+..... ....+..+....+ ..+..
T Consensus 252 ~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~v~~~-~r~~~l~~~~~~l------------~~l~~ 318 (677)
T 3rc3_A 252 RDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDY-KRLTPISVLDHAL------------ESLDN 318 (677)
T ss_dssp GCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEEEEEC-CCSSCEEECSSCC------------CSGGG
T ss_pred CCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceEEEEe-eecchHHHHHHHH------------HHHHh
Confidence 99999999998888877 788999999996432111110 000000000 0001111100000 00111
Q ss_pred hhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhh--cceEEEEeccccccCCCCCCcce
Q 003178 625 HILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRA--SKRLILVTSDVSARGMDYPDVTS 702 (842)
Q Consensus 625 ~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~--g~~~VLVaTdv~arGlDip~V~~ 702 (842)
. ..+.||||+|++.++.++..|.+.++.+..+||+|++.+|..+++.|++ |..+|||||+++++|||+ +|++
T Consensus 319 ~-----~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~ 392 (677)
T 3rc3_A 319 L-----RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRR 392 (677)
T ss_dssp C-----CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSE
T ss_pred c-----CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccE
Confidence 1 2345889999999999999999999999999999999999999999999 889999999999999999 9999
Q ss_pred eEEecC--------------CCChHHHHHHhhcCCCCCCC---cceeEEeccch
Q 003178 703 VVQVGI--------------PPDREQYIHRLGRTGREGKE---GEGVLLLAPWE 739 (842)
Q Consensus 703 VI~yd~--------------P~s~~~yiQRiGRaGR~G~~---G~~i~ll~~~E 739 (842)
||+++. |.+..+|+||+|||||.|.. |.|+++. +.+
T Consensus 393 VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~-~~d 445 (677)
T 3rc3_A 393 IIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMN-HED 445 (677)
T ss_dssp EEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESS-TTH
T ss_pred EEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEe-cch
Confidence 999999 88999999999999999965 5555443 444
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=5e-35 Score=333.94 Aligned_cols=268 Identities=17% Similarity=0.166 Sum_probs=186.2
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecce
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~ 494 (842)
.|++++++||||||||++|++|+++.+...+ .++||++||++||.|+++.+. ++.+...+|+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g----------~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~ 63 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKR----------LRTVILAPTRVVASEMYEALR-------GEPIRYMTPAV 63 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTT----------CCEEEEESSHHHHHHHHHHTT-------TSCEEEC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCC----------CCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCc
Confidence 3789999999999999999999997776432 269999999999999987664 33455444432
Q ss_pred eeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhhcc-cccccceeecc
Q 003178 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL-PRRRQSLLFSA 573 (842)
Q Consensus 495 ~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~~l-~~~~q~il~SA 573 (842)
... ...+..+.++|.+.+...+... ..+.++++|||||||++ +.++......+.... +..+|+++|||
T Consensus 64 ~~~------~~~~~~~~~~~~~~l~~~l~~~----~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SA 132 (431)
T 2v6i_A 64 QSE------RTGNEIVDFMCHSTFTMKLLQG----VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTA 132 (431)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHHT----CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEES
T ss_pred ccc------CCCCceEEEEchHHHHHHHhcC----ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeC
Confidence 211 1112345566777765544432 23678999999999997 433333333333332 45799999999
Q ss_pred cCcchhhcccc-ceeeeecccccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHH
Q 003178 574 TMPKELVLKRE-HTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR 652 (842)
Q Consensus 574 Tl~~~l~~~~~-~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~ 652 (842)
|+++.+..... ...+. .+...+ +. .....+..++.. ..+++||||++++.++.++..|+
T Consensus 133 T~~~~~~~~~~~~~~i~-----------~~~~~~---~~-~~~~~~~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~ 192 (431)
T 2v6i_A 133 TPPGTTEAFPPSNSPII-----------DEETRI---PD-KAWNSGYEWITE-----FDGRTVWFVHSIKQGAEIGTCLQ 192 (431)
T ss_dssp SCTTCCCSSCCCSSCCE-----------EEECCC---CS-SCCSSCCHHHHS-----CSSCEEEECSSHHHHHHHHHHHH
T ss_pred CCCcchhhhcCCCCcee-----------eccccC---CH-HHHHHHHHHHHc-----CCCCEEEEeCCHHHHHHHHHHHH
Confidence 99876421110 00000 000000 00 001111222322 24689999999999999999999
Q ss_pred HHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcce-----------------eEEecCCCChHHH
Q 003178 653 EMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTS-----------------VVQVGIPPDREQY 715 (842)
Q Consensus 653 ~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~-----------------VI~yd~P~s~~~y 715 (842)
..++.+..+||+ +|..+++.|++|+.+|||||+++++|||+| +.+ ||+++.|.+..+|
T Consensus 193 ~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~ 267 (431)
T 2v6i_A 193 KAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASA 267 (431)
T ss_dssp HTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHH
T ss_pred HcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHH
Confidence 999999999997 578899999999999999999999999999 554 6789999999999
Q ss_pred HHHhhcCCCCCC-CcceeEEe
Q 003178 716 IHRLGRTGREGK-EGEGVLLL 735 (842)
Q Consensus 716 iQRiGRaGR~G~-~G~~i~ll 735 (842)
+||+||+||.|. .|.++++.
T Consensus 268 ~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 268 AQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHHHTTSSCCTTCCCCEEEEC
T ss_pred HHhhhccCCCCCCCCeEEEEc
Confidence 999999999985 44555554
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.98 E-value=4.5e-33 Score=330.13 Aligned_cols=309 Identities=16% Similarity=0.142 Sum_probs=184.4
Q ss_pred eeeeehhhhhhhhhhc----C-cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHH-H
Q 003178 400 IQMTRVQEATLSACLE----G-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA-A 473 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~----g-~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~-~ 473 (842)
..|+++|.++++.++. + ++++++++||||||++ .++++..++...+... ....+.++|||+||++|+.|++ +
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~-~~~~~~~l~~~~~~~~-~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVV-AFQISWKLWSARWNRT-GDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHH-HHHHHHHHHHTTCCSS-CSSSCCCEEEEEC-----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHH-HHHHHHHHHhcccccc-cccCCCeEEEEeCCHHHHHHHHHH
Confidence 4699999999999876 4 6689999999999999 4556666665431110 0112347999999999999998 6
Q ss_pred HHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCc-eEEEecceeeeecccccccccccc
Q 003178 474 EAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL-SVRLMGLKMLVLDEADHLLDLGFR 552 (842)
Q Consensus 474 ~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~-~~~L~~l~~lVlDEAh~lld~gf~ 552 (842)
.+..+. ..+..+.++. .....+|+|+||++|...+.....+ .+....+++|||||||++...+ .
T Consensus 255 ~~~~~~-----~~~~~~~~~~---------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~ 319 (590)
T 3h1t_A 255 TFTPFG-----DARHKIEGGK---------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-N 319 (590)
T ss_dssp CCTTTC-----SSEEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC--------
T ss_pred HHHhcc-----hhhhhhhccC---------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-h
Confidence 665442 2233332221 1234799999999998765321110 1223568999999999987653 3
Q ss_pred cchhhhhhcccccccceeecccCcchhh-----ccccceee-----------------eecccccccc------------
Q 003178 553 KDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYI-----------------DTVGLGSVET------------ 598 (842)
Q Consensus 553 ~~i~~Il~~l~~~~q~il~SATl~~~l~-----~~~~~~~i-----------------~~v~~~~~~~------------ 598 (842)
..+..++..++ ..++++||||+..... +.....+. ..+.......
T Consensus 320 ~~~~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
T 3h1t_A 320 SNWREILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRF 398 (590)
T ss_dssp --CHHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-------------
T ss_pred HHHHHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccc
Confidence 55667777765 4679999999764311 00000000 0000000000
Q ss_pred ccccccccccc-------CchhhHHHHHHHHhhhhcC-CCCceEEEEecchhHHHHHHHHHHHHhhh--------HHHHh
Q 003178 599 PVKIKQSCLVA-------PHELHFQILHHLLKEHILG-TPDYKVIVFCSTGMVTSLLYLLLREMKMN--------VREMY 662 (842)
Q Consensus 599 ~~~l~~~~~~~-------~~~~k~~~L~~lL~~~~~~-~~~~kiIVF~~s~~~~~~l~~~L~~~~~~--------v~~lh 662 (842)
...+....... ....+...+...+..++.. .+.+++||||+++.+++.++..|.+.+.. +..+|
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~ 478 (590)
T 3h1t_A 399 GREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVT 478 (590)
T ss_dssp ----------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECS
T ss_pred ccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEe
Confidence 00000000000 0011222333333222211 34579999999999999999999987654 45688
Q ss_pred hcCcchhhhhhhHHHhhcceE---EEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCC
Q 003178 663 SRKPQLYRDRISEEFRASKRL---ILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGK 727 (842)
Q Consensus 663 g~~~~~~R~~v~~~F~~g~~~---VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~ 727 (842)
|.+++ +|..+++.|++|+.. |||||+++++|||+|+|++||++++|.++..|+||+||+||.+.
T Consensus 479 g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 479 SEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp STTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred CCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 88764 799999999998866 89999999999999999999999999999999999999999885
No 53
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.97 E-value=5.4e-33 Score=302.18 Aligned_cols=198 Identities=30% Similarity=0.419 Sum_probs=171.6
Q ss_pred ccccccccccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcC--cceEEeeccCCCceeeehhHHHHHHHhhcc
Q 003178 369 KREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATS 446 (842)
Q Consensus 369 ~~~~~~~~~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g--~dvii~A~TGSGKTlafllPil~~l~~~~~ 446 (842)
.+...+..+..+|+++++++.++++|..+||..||++|.++||.++.| +|++++||||||||++|++|+++++....
T Consensus 82 ~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~- 160 (300)
T 3fmo_B 82 RDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN- 160 (300)
T ss_dssp SSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS-
T ss_pred CCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC-
Confidence 344556667789999999999999999999999999999999999998 99999999999999999999998875432
Q ss_pred cCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccC
Q 003178 447 SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS 526 (842)
Q Consensus 447 ~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~ 526 (842)
.++++|||+|||+||.|+++.+..+....+++.+.+++|+....... ...++|+|+|||+|++++.+..
T Consensus 161 -------~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~TP~~l~~~l~~~~ 229 (300)
T 3fmo_B 161 -------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLK 229 (300)
T ss_dssp -------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTTC
T ss_pred -------CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh----cCCCCEEEECHHHHHHHHHhcC
Confidence 23479999999999999999999998877788899999987654322 3457999999999999996542
Q ss_pred CceEEEecceeeeecccccccc-cccccchhhhhhcccccccceeecccCcchhh
Q 003178 527 GLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKELV 580 (842)
Q Consensus 527 ~~~~~L~~l~~lVlDEAh~lld-~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~ 580 (842)
...+.++++|||||||+|++ .+|...+..|+..+++.+|+++||||+++.+.
T Consensus 230 --~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~ 282 (300)
T 3fmo_B 230 --FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVW 282 (300)
T ss_dssp --CCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHH
T ss_pred --CCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHH
Confidence 24568999999999999998 78999999999999999999999999998753
No 54
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.97 E-value=1.5e-31 Score=332.55 Aligned_cols=318 Identities=17% Similarity=0.194 Sum_probs=219.0
Q ss_pred eeeeehhhhhhhhhhc--CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH
Q 003178 400 IQMTRVQEATLSACLE--GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~--g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~ 477 (842)
..|+|+|.+++..++. +..+|++++||+|||++++..+...+..... -++|||||+ .|+.|+..++.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~---------~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA---------ERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSC---------CCEEEECCT-TTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCC---------CeEEEEeCH-HHHHHHHHHHHH
Confidence 3589999999998887 4488999999999999976665544433211 148999999 999999999977
Q ss_pred hhhcCCceeEEEEecceeeeeccc-cccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccccccccccc-ch
Q 003178 478 LLKNHDGIGVLTLVGGTRFKVDQR-RLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK-DV 555 (842)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~~-~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~-~i 555 (842)
.+ ++.+..+.|+........ .......+|+|+|++.|........ .+...++++|||||||++.+.+... ..
T Consensus 222 ~f----~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~--~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 222 RF----NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLE--HLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HS----CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTH--HHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred Hh----CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHH--HhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 75 445555554432111000 0111246999999998864322110 1122468999999999997654321 11
Q ss_pred hhhhhcc-cccccceeecccCcch-hh-------cccccee-------------e------------------------e
Q 003178 556 ENIVDCL-PRRRQSLLFSATMPKE-LV-------LKREHTY-------------I------------------------D 589 (842)
Q Consensus 556 ~~Il~~l-~~~~q~il~SATl~~~-l~-------~~~~~~~-------------i------------------------~ 589 (842)
...+..+ .+..+++++|||+... .. +.....+ . .
T Consensus 296 ~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~ 375 (968)
T 3dmq_A 296 YQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGE 375 (968)
T ss_dssp HHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTT
T ss_pred HHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 2223323 2445789999997431 00 0000000 0 0
Q ss_pred ecc----------c------------------------cc---ccccccccc----------------------------
Q 003178 590 TVG----------L------------------------GS---VETPVKIKQ---------------------------- 604 (842)
Q Consensus 590 ~v~----------~------------------------~~---~~~~~~l~~---------------------------- 604 (842)
.+. . .. ......+..
T Consensus 376 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~ 455 (968)
T 3dmq_A 376 MIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMG 455 (968)
T ss_dssp TTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTT
T ss_pred HhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhh
Confidence 000 0 00 000000000
Q ss_pred -------------------------cccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHH-HhhhH
Q 003178 605 -------------------------SCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLRE-MKMNV 658 (842)
Q Consensus 605 -------------------------~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~-~~~~v 658 (842)
....+....|...+..++.. ..+.++||||+++..++.++..|.. .++.+
T Consensus 456 ~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~----~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~ 531 (968)
T 3dmq_A 456 ARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS----HRSQKVLVICAKAATALQLEQVLREREGIRA 531 (968)
T ss_dssp CCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH----TSSSCCCEECSSTHHHHHHHHHHHTTTCCCE
T ss_pred hhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh----CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcE
Confidence 00122334567777777765 3567999999999999999999994 59999
Q ss_pred HHHhhcCcchhhhhhhHHHhhcc--eEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEec
Q 003178 659 REMYSRKPQLYRDRISEEFRASK--RLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLA 736 (842)
Q Consensus 659 ~~lhg~~~~~~R~~v~~~F~~g~--~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~ 736 (842)
..+||+|++.+|..+++.|++|+ +.|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.++++..
T Consensus 532 ~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 532 AVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp EEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 99999999999999999999998 9999999999999999999999999999999999999999999999998777755
Q ss_pred c
Q 003178 737 P 737 (842)
Q Consensus 737 ~ 737 (842)
.
T Consensus 612 ~ 612 (968)
T 3dmq_A 612 Y 612 (968)
T ss_dssp E
T ss_pred c
Confidence 4
No 55
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.97 E-value=7.1e-32 Score=283.70 Aligned_cols=195 Identities=34% Similarity=0.491 Sum_probs=169.2
Q ss_pred ccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCce
Q 003178 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (842)
Q Consensus 377 ~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 456 (842)
...+|.++++++.+++.|.++||..|+++|.++|+.++.|+|++++||||||||++|++|++.++....... ...+.
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~---~~~~~ 103 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE---RGDGP 103 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCC---TTCCC
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccc---cCCCC
Confidence 346799999999999999999999999999999999999999999999999999999999999887543211 12345
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecce
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~ 536 (842)
++|||+||++||.|+++.+.+++... ++.+..++|+.........+.. +++|+|+||++|.+++.... ..+.+++
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~---~~~~~~~ 178 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLER-GVEICIATPGRLIDFLECGK---TNLRRTT 178 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHH-CCSEEEECHHHHHHHHHHTS---CCCTTCC
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcCC---CCccccc
Confidence 79999999999999999999988765 7888999999876655444443 47999999999999987652 4577899
Q ss_pred eeeecccccccccccccchhhhhhcccccccceeecccCcchh
Q 003178 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (842)
Q Consensus 537 ~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l 579 (842)
+|||||||++++++|...+..++..+++.+|+++||||+++.+
T Consensus 179 ~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~ 221 (242)
T 3fe2_A 179 YLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 221 (242)
T ss_dssp EEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHH
T ss_pred EEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHH
Confidence 9999999999999999999999999999999999999999875
No 56
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.96 E-value=5.7e-31 Score=273.83 Aligned_cols=194 Identities=31% Similarity=0.468 Sum_probs=159.2
Q ss_pred cccccc-cCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCce
Q 003178 378 QKRFDE-CGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (842)
Q Consensus 378 ~~~F~~-l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 456 (842)
..+|.+ +++++.++++|.++||..|+++|.++++.+++|+|++++||||||||++|++|++..+....... ....+.
T Consensus 18 ~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~--~~~~~~ 95 (228)
T 3iuy_A 18 TCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR--EQRNGP 95 (228)
T ss_dssp CCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-----------CCC
T ss_pred hhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh--hccCCC
Confidence 456888 79999999999999999999999999999999999999999999999999999998875432111 112345
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecce
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~ 536 (842)
++||++||++||.|+++.+.++. ..++.+..++|+.........+.. +++|+|+||++|.+++... ...+.+++
T Consensus 96 ~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~---~~~~~~~~ 169 (228)
T 3iuy_A 96 GMLVLTPTRELALHVEAECSKYS--YKGLKSICIYGGRNRNGQIEDISK-GVDIIIATPGRLNDLQMNN---SVNLRSIT 169 (228)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHC--CTTCCEEEECC------CHHHHHS-CCSEEEECHHHHHHHHHTT---CCCCTTCC
T ss_pred cEEEEeCCHHHHHHHHHHHHHhc--ccCceEEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcC---CcCcccce
Confidence 79999999999999999999986 347788889998876655444433 4899999999999988665 24577899
Q ss_pred eeeecccccccccccccchhhhhhcccccccceeecccCcchh
Q 003178 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (842)
Q Consensus 537 ~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l 579 (842)
+|||||||++++++|...+..++..+++.+|+++||||+|+.+
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 212 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTV 212 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHH
T ss_pred EEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHH
Confidence 9999999999999999999999999999999999999999874
No 57
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.96 E-value=5.3e-30 Score=297.40 Aligned_cols=303 Identities=14% Similarity=0.174 Sum_probs=207.6
Q ss_pred eeeehhhhhhhhhh----cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 401 QMTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 401 ~~t~iQ~~aI~~il----~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
.|+|+|.+++..+. .++++|++++||+|||+++ +.++..+...... .++|||||+ .|+.||.+++.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~a-i~~i~~~~~~~~~--------~~~LIv~P~-~l~~qw~~e~~ 106 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQT-IAVFSDAKKENEL--------TPSLVICPL-SVLKNWEEELS 106 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHH-HHHHHHHHHTTCC--------SSEEEEECS-TTHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHH-HHHHHHHHhcCCC--------CCEEEEccH-HHHHHHHHHHH
Confidence 58999999998764 4789999999999999984 4455555433211 148999994 68899999999
Q ss_pred HhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchh
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~ 556 (842)
+++. .+.+..+.|+... .....++|+|+||+.|.....- ....+++||+||||++.+.+ ....
T Consensus 107 ~~~~---~~~v~~~~g~~~~------~~~~~~~ivi~t~~~l~~~~~l------~~~~~~~vIvDEaH~~kn~~--~~~~ 169 (500)
T 1z63_A 107 KFAP---HLRFAVFHEDRSK------IKLEDYDIILTTYAVLLRDTRL------KEVEWKYIVIDEAQNIKNPQ--TKIF 169 (500)
T ss_dssp HHCT---TSCEEECSSSTTS------CCGGGSSEEEEEHHHHTTCHHH------HTCCEEEEEEETGGGGSCTT--SHHH
T ss_pred HHCC---CceEEEEecCchh------ccccCCcEEEeeHHHHhccchh------cCCCcCEEEEeCccccCCHh--HHHH
Confidence 8863 4566666665421 1123479999999999765431 12357899999999997653 2333
Q ss_pred hhhhcccccccceeecccCcch----h----hccc---------------------------------cceeeeecccc-
Q 003178 557 NIVDCLPRRRQSLLFSATMPKE----L----VLKR---------------------------------EHTYIDTVGLG- 594 (842)
Q Consensus 557 ~Il~~l~~~~q~il~SATl~~~----l----~~~~---------------------------------~~~~i~~v~~~- 594 (842)
..+..++ ..+.+++|||+... + .+.. ....+......
T Consensus 170 ~~l~~l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~ 248 (500)
T 1z63_A 170 KAVKELK-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDK 248 (500)
T ss_dssp HHHHTSC-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCH
T ss_pred HHHHhhc-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeeccccc
Confidence 4444443 35679999997442 0 0000 00000000000
Q ss_pred --ccccccccccccc--------------------------------------------------------ccCchhhHH
Q 003178 595 --SVETPVKIKQSCL--------------------------------------------------------VAPHELHFQ 616 (842)
Q Consensus 595 --~~~~~~~l~~~~~--------------------------------------------------------~~~~~~k~~ 616 (842)
....|........ ......|+.
T Consensus 249 ~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~ 328 (500)
T 1z63_A 249 AIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMI 328 (500)
T ss_dssp HHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHH
T ss_pred chhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHH
Confidence 0000000000000 011234555
Q ss_pred HHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH-hhhHHHHhhcCcchhhhhhhHHHhhc-ceE-EEEecccccc
Q 003178 617 ILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-KMNVREMYSRKPQLYRDRISEEFRAS-KRL-ILVTSDVSAR 693 (842)
Q Consensus 617 ~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~-~~~v~~lhg~~~~~~R~~v~~~F~~g-~~~-VLVaTdv~ar 693 (842)
.+..++.... ..+.++||||++...++.++..|... ++.+..+||++++.+|..+++.|+++ ... +|+||+++++
T Consensus 329 ~l~~~l~~~~--~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~ 406 (500)
T 1z63_A 329 RTMEIIEEAL--DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGF 406 (500)
T ss_dssp HHHHHHHHHH--TTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-C
T ss_pred HHHHHHHHHH--ccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccC
Confidence 5566666554 24679999999999999999999885 89999999999999999999999998 454 7899999999
Q ss_pred CCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeE
Q 003178 694 GMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVL 733 (842)
Q Consensus 694 GlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ 733 (842)
|+|+|++++||+||+|+++..|+||+||++|.|+.+.+.+
T Consensus 407 Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v 446 (500)
T 1z63_A 407 GINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 446 (500)
T ss_dssp CCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEE
T ss_pred CCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEE
Confidence 9999999999999999999999999999999998776643
No 58
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=8.3e-31 Score=267.75 Aligned_cols=189 Identities=35% Similarity=0.595 Sum_probs=164.9
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
.+|+++++++.++++|.++||..|+++|.++++.+++++++++++|||||||++|++|+++.+.... .+.++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------~~~~~ 74 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK--------DNIQA 74 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS--------CSCCE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC--------CCeeE
Confidence 4699999999999999999999999999999999999999999999999999999999987764321 23469
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceee
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~l 538 (842)
||++||++|+.|+++.+..+....+++.+..++|+.........+. .+++|+|+||++|.+++... ...+.++++|
T Consensus 75 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~~---~~~~~~~~~l 150 (206)
T 1vec_A 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPGRILDLIKKG---VAKVDHVQMI 150 (206)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT-SCCSEEEECHHHHHHHHHTT---CSCCTTCCEE
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC-CCCCEEEeCHHHHHHHHHcC---CcCcccCCEE
Confidence 9999999999999999999987766788889999877654444443 45899999999999888754 2346789999
Q ss_pred eecccccccccccccchhhhhhcccccccceeecccCcchh
Q 003178 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (842)
Q Consensus 539 VlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l 579 (842)
|+||||++.+.+|...+..++..+++..|+++||||++..+
T Consensus 151 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~ 191 (206)
T 1vec_A 151 VLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSV 191 (206)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHH
T ss_pred EEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHH
Confidence 99999999999999999999999998999999999999874
No 59
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.96 E-value=6.1e-30 Score=297.66 Aligned_cols=321 Identities=17% Similarity=0.161 Sum_probs=219.3
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.++++|....-.+..|+ |+.+.||+|||+++.+|++-..+... .+.|++||+.||.|-++++..++.
T Consensus 75 r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~-----------~vhVvT~ndyLA~rdae~m~~l~~ 141 (822)
T 3jux_A 75 RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGK-----------GVHLVTVNDYLARRDALWMGPVYL 141 (822)
T ss_dssp CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSS-----------CEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCC-----------ceEEEeccHHHHHhHHHHHHHHHH
Confidence 47788888777777776 99999999999999999985544322 489999999999999999999988
Q ss_pred cCCceeEEEEecce------------------------------------------------eeeeccccccCCCceEEe
Q 003178 481 NHDGIGVLTLVGGT------------------------------------------------RFKVDQRRLESDPCQILV 512 (842)
Q Consensus 481 ~~~~i~v~~l~Gg~------------------------------------------------~~~~~~~~l~~~~~~IIV 512 (842)
+. |+.|.+++... ......++- .-.|+|++
T Consensus 142 ~L-glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~-aY~~DItY 219 (822)
T 3jux_A 142 FL-GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE-AYLCDVTY 219 (822)
T ss_dssp HT-TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH-HHHSSEEE
T ss_pred Hh-CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH-HhcCCCEE
Confidence 75 89999888721 000000000 01379999
Q ss_pred cCccchh-hhccccCC---ceEEEecceeeeeccccccc-cccccc---------------chhhhhhccc---------
Q 003178 513 ATPGRLL-DHIENKSG---LSVRLMGLKMLVLDEADHLL-DLGFRK---------------DVENIVDCLP--------- 563 (842)
Q Consensus 513 aTPgrLl-~~L~~~~~---~~~~L~~l~~lVlDEAh~ll-d~gf~~---------------~i~~Il~~l~--------- 563 (842)
+|..-|- +.|..+.. -..-...+.+.||||+|.+| |....+ .+..++..+.
T Consensus 220 gTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vde 299 (822)
T 3jux_A 220 GTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDE 299 (822)
T ss_dssp EEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECC
T ss_pred ccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEc
Confidence 9988762 33332210 01224578899999999865 211000 0000000000
Q ss_pred -----------------------------------------------c--------------------------------
Q 003178 564 -----------------------------------------------R-------------------------------- 564 (842)
Q Consensus 564 -----------------------------------------------~-------------------------------- 564 (842)
+
T Consensus 300 k~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLH 379 (822)
T 3jux_A 300 KARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLH 379 (822)
T ss_dssp SSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHH
T ss_pred ccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHH
Confidence 0
Q ss_pred -----------------------------cccceeecccCcchhhccccceeeeecccccccccccccc-cccccCchhh
Q 003178 565 -----------------------------RRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKIKQ-SCLVAPHELH 614 (842)
Q Consensus 565 -----------------------------~~q~il~SATl~~~l~~~~~~~~i~~v~~~~~~~~~~l~~-~~~~~~~~~k 614 (842)
-.++.+||+|+..+.........+..+.+........+.+ ..+......|
T Consensus 380 QaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~R~d~~d~vy~t~~eK 459 (822)
T 3jux_A 380 QAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIPTHKPMIRKDHDDLVFRTQKEK 459 (822)
T ss_dssp HHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEECCCSSCCCCEECCCEEESSHHHH
T ss_pred HHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEEECCCCCcceeecCcEEEecHHHH
Confidence 0134567777655422111111112222222111122222 2345566778
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccC
Q 003178 615 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARG 694 (842)
Q Consensus 615 ~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arG 694 (842)
+..+...+..... .+.++||||+|+..++.++..|.+.|+.+..+||+..+.++..+...|+.| .|+||||+|+||
T Consensus 460 ~~al~~~I~~~~~--~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRG 535 (822)
T 3jux_A 460 YEKIVEEIEKRYK--KGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRG 535 (822)
T ss_dssp HHHHHHHHHHHHH--HTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTT
T ss_pred HHHHHHHHHHHhh--CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCC
Confidence 8888887776431 345899999999999999999999999999999996555555555555555 699999999999
Q ss_pred CCCC--------CcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchh
Q 003178 695 MDYP--------DVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 740 (842)
Q Consensus 695 lDip--------~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~ 740 (842)
+||+ ++.+||+|++|.+...|+||+|||||.|.+|.+++|++..|.
T Consensus 536 tDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 536 TDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred cCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 9998 667999999999999999999999999999999999998773
No 60
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.96 E-value=7.4e-31 Score=271.44 Aligned_cols=189 Identities=35% Similarity=0.569 Sum_probs=163.8
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
.+|+++++++.++++|.++||..|+++|.++++.+++|++++++||||||||++|++|+++.+.... .+.++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--------~~~~~ 75 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER--------AEVQA 75 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS--------CSCCE
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc--------CCceE
Confidence 5699999999999999999999999999999999999999999999999999999999998765322 23469
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCC---ceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecc
Q 003178 459 LILCPTRELASQIAAEAIALLKNHD---GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~---~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l 535 (842)
||++||++||.|+++.+.++..... ++.+..++|+.........+. .+++|+|+||++|.+++... ...+.++
T Consensus 76 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~---~~~~~~~ 151 (219)
T 1q0u_A 76 VITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN-VQPHIVIGTPGRINDFIREQ---ALDVHTA 151 (219)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCS-SCCSEEEECHHHHHHHHHTT---CCCGGGC
T ss_pred EEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcC-CCCCEEEeCHHHHHHHHHcC---CCCcCcc
Confidence 9999999999999999999876543 567888888877654444443 35899999999999988764 2446789
Q ss_pred eeeeecccccccccccccchhhhhhcccccccceeecccCcchh
Q 003178 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (842)
Q Consensus 536 ~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l 579 (842)
++|||||||++.+++|...+..++..+++..|+++||||++..+
T Consensus 152 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~ 195 (219)
T 1q0u_A 152 HILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKL 195 (219)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGG
T ss_pred eEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHH
Confidence 99999999999999999999999999999999999999998875
No 61
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.96 E-value=7.4e-31 Score=279.73 Aligned_cols=195 Identities=39% Similarity=0.630 Sum_probs=163.9
Q ss_pred ccccccccC--CCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccC
Q 003178 377 SQKRFDECG--ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP 454 (842)
Q Consensus 377 ~~~~F~~l~--l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~ 454 (842)
....|++++ +++.++++|..+||..|+++|.++++.++.++|++++||||||||++|++|+++.+...... ...
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~----~~~ 125 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM----PRN 125 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC----GGG
T ss_pred ccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc----ccC
Confidence 345677777 99999999999999999999999999999999999999999999999999999988764321 112
Q ss_pred ceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEec
Q 003178 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (842)
Q Consensus 455 ~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~ 534 (842)
+.++||++||++||.|+++.+.+++... ++.+..++|+.........+.. +++|+|+||++|.+++..... ..+.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~--~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGN-GINIIVATPGRLLDHMQNTPG--FMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHH-CCSEEEECHHHHHHHHHHCTT--CCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcC-CCCEEEEcHHHHHHHHHccCC--ccccc
Confidence 4479999999999999999999988654 6778888998776554444433 389999999999998876532 34678
Q ss_pred ceeeeecccccccccccccchhhhhhcccccccceeecccCcchh
Q 003178 535 LKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (842)
Q Consensus 535 l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l 579 (842)
+++|||||||++++++|...+..|+..+++.+|+++||||+++.+
T Consensus 202 l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v 246 (262)
T 3ly5_A 202 LQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKV 246 (262)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHH
T ss_pred CCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHH
Confidence 999999999999999999999999999999999999999999875
No 62
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.96 E-value=9.4e-31 Score=273.03 Aligned_cols=189 Identities=34% Similarity=0.523 Sum_probs=164.3
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
..+|+++++++.+++.|.++||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+.... .+.+
T Consensus 23 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--------~~~~ 94 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN--------LSTQ 94 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS--------CSCC
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC--------CCce
Confidence 35699999999999999999999999999999999999999999999999999999999998775432 1236
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
+||++||++|+.|+++.+..+.....++.+..++|+.........+. +++|+|+||++|.+++... ...+.++++
T Consensus 95 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~Iiv~Tp~~l~~~~~~~---~~~~~~~~~ 169 (230)
T 2oxc_A 95 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK--KCHIAVGSPGRIKQLIELD---YLNPGSIRL 169 (230)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT--SCSEEEECHHHHHHHHHTT---SSCGGGCCE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc--CCCEEEECHHHHHHHHhcC---CcccccCCE
Confidence 99999999999999999999987666788999999877654443332 4899999999999988654 234678999
Q ss_pred eeecccccccccc-cccchhhhhhcccccccceeecccCcchh
Q 003178 538 LVLDEADHLLDLG-FRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (842)
Q Consensus 538 lVlDEAh~lld~g-f~~~i~~Il~~l~~~~q~il~SATl~~~l 579 (842)
|||||||+++++| |...+..++..+++.+|+++||||+++.+
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~ 212 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFL 212 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHH
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHH
Confidence 9999999999998 99999999999998999999999999874
No 63
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.96 E-value=2e-30 Score=271.21 Aligned_cols=194 Identities=40% Similarity=0.643 Sum_probs=164.9
Q ss_pred ccccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCce
Q 003178 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (842)
Q Consensus 377 ~~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 456 (842)
...+|+++++++.+++.|.++||..|+++|.++++.+++|+++++++|||||||++|++|+++.+...... ...+.
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~----~~~~~ 98 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT----STDGL 98 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC----GGGCC
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc----ccCCc
Confidence 34579999999999999999999999999999999999999999999999999999999999988764321 12345
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecce
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~ 536 (842)
++||++||++||.|+++.+..+.... ++.+..++|+.........+ .+++|+|+||++|.+++..... ..+.+++
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~iiv~Tp~~l~~~l~~~~~--~~~~~~~ 173 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERI--NNINILVCTPGRLLQHMDETVS--FHATDLQ 173 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHH--TTCSEEEECHHHHHHHHHHCSS--CCCTTCC
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhC--CCCCEEEECHHHHHHHHHhcCC--ccccccc
Confidence 79999999999999999999987643 67888889987765444444 3489999999999988865421 3467899
Q ss_pred eeeecccccccccccccchhhhhhcccccccceeecccCcchh
Q 003178 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (842)
Q Consensus 537 ~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l 579 (842)
+|||||||++++++|...+..++..+++.+|+++||||+++.+
T Consensus 174 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 216 (236)
T 2pl3_A 174 MLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSV 216 (236)
T ss_dssp EEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHH
T ss_pred EEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHH
Confidence 9999999999999999999999999999999999999999875
No 64
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.96 E-value=8.3e-31 Score=274.82 Aligned_cols=190 Identities=31% Similarity=0.538 Sum_probs=157.3
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
..+|+++++++.++++|..+||..|+++|.++|+.++.++|++++||||||||++|++|+++.+.... .+.+
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~--------~~~~ 100 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF--------KETQ 100 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS--------CSCC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC--------CCce
Confidence 36799999999999999999999999999999999999999999999999999999999998764321 2346
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
+||++||++|+.|+++.+..+.... ++.+..++|+.........+..+.++|+|+||++|.+++.... ..+.++++
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~---~~~~~~~~ 176 (237)
T 3bor_A 101 ALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY---LSPKWIKM 176 (237)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTS---SCSTTCCE
T ss_pred EEEEECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC---cCcccCcE
Confidence 9999999999999999999987644 6778888898877666666665558999999999999887642 34678999
Q ss_pred eeecccccccccccccchhhhhhcccccccceeecccCcchh
Q 003178 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (842)
Q Consensus 538 lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l 579 (842)
|||||||++++++|...+..++..+++.+|+++||||+++.+
T Consensus 177 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~ 218 (237)
T 3bor_A 177 FVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDV 218 (237)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHH
T ss_pred EEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHH
Confidence 999999999999999999999999999999999999999874
No 65
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.96 E-value=2.2e-30 Score=273.95 Aligned_cols=190 Identities=38% Similarity=0.652 Sum_probs=165.1
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
..+|+++++++.++++|..+||..|+++|.++|+.+++|++++++||||||||++|++|+++.+..... +.+
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~--------~~~ 113 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQ--------RLF 113 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCC--------SSC
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCC--------Cce
Confidence 467999999999999999999999999999999999999999999999999999999999998876432 236
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
+||++||++||.|+++.+.++.... ++.+..++|+.........+. .+++|+|+||++|.+++..... ..+.++++
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~I~v~Tp~~l~~~l~~~~~--~~l~~~~~ 189 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALA-KKPHIIIATPGRLIDHLENTKG--FNLRALKY 189 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHHH-TCCSEEEECHHHHHHHHHHSTT--CCCTTCCE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHhc-CCCCEEEECHHHHHHHHHcCCC--cCccccCE
Confidence 9999999999999999999987654 678888899876544333332 3589999999999998875432 34678999
Q ss_pred eeecccccccccccccchhhhhhcccccccceeecccCcchh
Q 003178 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (842)
Q Consensus 538 lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l 579 (842)
|||||||++++++|...+..++..+++.+|+++||||++..+
T Consensus 190 lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v 231 (249)
T 3ber_A 190 LVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKV 231 (249)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHH
T ss_pred EEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHH
Confidence 999999999999999999999999999999999999999875
No 66
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.96 E-value=2.5e-30 Score=273.41 Aligned_cols=197 Identities=38% Similarity=0.582 Sum_probs=164.3
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCc-ccccCce
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST-TQLVPPI 456 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~-~~~~~~~ 456 (842)
..+|+++++++.++++|..+||..|+++|.++|+.++.++|++++||||||||++|++|+++.+........ .....++
T Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~ 101 (253)
T 1wrb_A 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP 101 (253)
T ss_dssp CCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCc
Confidence 457999999999999999999999999999999999999999999999999999999999998876432110 0112335
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecce
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~ 536 (842)
++|||+||++||.|+++.+.++.... ++.+..++|+.........+. .+++|+|+||++|.+++.... ..+.+++
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~Ivv~Tp~~l~~~l~~~~---~~~~~~~ 176 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQ-MGCHLLVATPGRLVDFIEKNK---ISLEFCK 176 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHS-SCCSEEEECHHHHHHHHHTTS---BCCTTCC
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhC-CCCCEEEECHHHHHHHHHcCC---CChhhCC
Confidence 79999999999999999999987643 678888899887654444443 358999999999999887652 4567899
Q ss_pred eeeecccccccccccccchhhhhhc--ccc--cccceeecccCcchh
Q 003178 537 MLVLDEADHLLDLGFRKDVENIVDC--LPR--RRQSLLFSATMPKEL 579 (842)
Q Consensus 537 ~lVlDEAh~lld~gf~~~i~~Il~~--l~~--~~q~il~SATl~~~l 579 (842)
+|||||||++++++|...+..++.. ++. .+|+++||||+++.+
T Consensus 177 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~ 223 (253)
T 1wrb_A 177 YIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEI 223 (253)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHH
T ss_pred EEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHH
Confidence 9999999999999999999999884 444 789999999999874
No 67
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=3.3e-30 Score=266.44 Aligned_cols=190 Identities=34% Similarity=0.567 Sum_probs=164.9
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEE
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 458 (842)
..|+++++++.++++|.++||..|+++|.++++.+++++++++++|||+|||++|++|+++.+.... .+.++
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~--------~~~~~ 85 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVSV 85 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT--------TCCCE
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC--------CCEEE
Confidence 5699999999999999999999999999999999999999999999999999999999987653211 22469
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceee
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~l 538 (842)
||++||++|+.|+++.+.++....+++.+..++|+.........+....++|+|+||++|..++.... ..+.++++|
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~l 162 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHF 162 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS---SCCTTCCEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC---CCcccCCEE
Confidence 99999999999999999999877667889999998876555555555557999999999998887642 346789999
Q ss_pred eecccccccc-cccccchhhhhhcccccccceeecccCcchh
Q 003178 539 VLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (842)
Q Consensus 539 VlDEAh~lld-~gf~~~i~~Il~~l~~~~q~il~SATl~~~l 579 (842)
|+||||++++ .+|...+..++..+++..|+++||||+++.+
T Consensus 163 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 204 (220)
T 1t6n_A 163 ILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEI 204 (220)
T ss_dssp EEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTT
T ss_pred EEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHH
Confidence 9999999987 5888999999999988999999999999874
No 68
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.96 E-value=7.8e-30 Score=264.16 Aligned_cols=188 Identities=34% Similarity=0.569 Sum_probs=157.6
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceE
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 457 (842)
..+|+++++++.+++.|..+||..|+++|.++++.+++++++++++|||||||++|++|+++.+.... .+.+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~--------~~~~ 84 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQ 84 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC--------CSCC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC--------CCce
Confidence 35799999999999999999999999999999999999999999999999999999999998774322 2346
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEeccee
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~ 537 (842)
+||++||++|+.|+++.+..+.... ++.+..++|+.........+.. ++|+|+||++|.+++... ...+.++++
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~--~~iiv~Tp~~l~~~~~~~---~~~~~~~~~ 158 (224)
T 1qde_A 85 ALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD--AQIVVGTPGRVFDNIQRR---RFRTDKIKM 158 (224)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------CTT--CSEEEECHHHHHHHHHTT---SSCCTTCCE
T ss_pred EEEEECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcCCC--CCEEEECHHHHHHHHHhC---CcchhhCcE
Confidence 9999999999999999999987654 6788888998876655444433 799999999999888765 234678999
Q ss_pred eeecccccccccccccchhhhhhcccccccceeecccCcchh
Q 003178 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (842)
Q Consensus 538 lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l 579 (842)
|||||||++.+++|...+..++..+++..|+++||||+++.+
T Consensus 159 iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~ 200 (224)
T 1qde_A 159 FILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDV 200 (224)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHH
T ss_pred EEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHH
Confidence 999999999999999999999999999999999999999874
No 69
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.95 E-value=1e-29 Score=267.36 Aligned_cols=192 Identities=28% Similarity=0.445 Sum_probs=158.0
Q ss_pred cccccc----CCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccC
Q 003178 379 KRFDEC----GISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP 454 (842)
Q Consensus 379 ~~F~~l----~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~ 454 (842)
.+|+++ ++++.++++|.++||..|+++|.++|+.+++|++++++||||||||++|++|+++.+.... ..
T Consensus 25 ~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-------~~ 97 (245)
T 3dkp_A 25 ATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA-------NK 97 (245)
T ss_dssp SSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC-------SS
T ss_pred cCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc-------cC
Confidence 457665 8999999999999999999999999999999999999999999999999999998875321 12
Q ss_pred ceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEec
Q 003178 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (842)
Q Consensus 455 ~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~ 534 (842)
+.++||++||++||.|+++.+.+++... ++.+..++|+.............+++|+|+||++|.+++..... ...+.+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~-~~~~~~ 175 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPP-GIDLAS 175 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSC-SCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCC-Cccccc
Confidence 3479999999999999999999987654 67777777776544333344455689999999999998876532 245778
Q ss_pred ceeeeecccccccc---cccccchhhhhhcc-cccccceeecccCcchh
Q 003178 535 LKMLVLDEADHLLD---LGFRKDVENIVDCL-PRRRQSLLFSATMPKEL 579 (842)
Q Consensus 535 l~~lVlDEAh~lld---~gf~~~i~~Il~~l-~~~~q~il~SATl~~~l 579 (842)
+++|||||||++++ .+|...+..++..+ +...|+++||||+++.+
T Consensus 176 ~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v 224 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDV 224 (245)
T ss_dssp CCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHH
T ss_pred CcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHH
Confidence 99999999999998 46888888887654 45789999999999875
No 70
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.95 E-value=8.7e-30 Score=260.15 Aligned_cols=188 Identities=38% Similarity=0.585 Sum_probs=160.6
Q ss_pred cccccCCCchhHhhhcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEE
Q 003178 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (842)
Q Consensus 380 ~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~L 459 (842)
+|+++++++.+++.|.++||..|+++|.++++.+++++++++++|||||||++|++|+++.+..... ...+.++|
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-----~~~~~~~l 76 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE-----RGRKPRAL 76 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-----TTCCCSEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-----cCCCCcEE
Confidence 5899999999999999999999999999999999999999999999999999999999987753211 11234799
Q ss_pred EeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeee
Q 003178 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (842)
Q Consensus 460 IL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lV 539 (842)
|++||++|+.|+++.+.+++.. +.+..++|+.........+. .+++|+|+||++|.+++... ...+.++++||
T Consensus 77 il~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~~---~~~~~~~~~iV 149 (207)
T 2gxq_A 77 VLTPTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQKEALL-RGADAVVATPGRALDYLRQG---VLDLSRVEVAV 149 (207)
T ss_dssp EECSSHHHHHHHHHHHHHHCTT---SCEEEECSSSCSHHHHHHHH-HCCSEEEECHHHHHHHHHHT---SSCCTTCSEEE
T ss_pred EEECCHHHHHHHHHHHHHHhhc---ceEEEEECCCChHHHHHHhh-CCCCEEEECHHHHHHHHHcC---CcchhhceEEE
Confidence 9999999999999999998653 66788888876544333333 24799999999999988764 23467899999
Q ss_pred ecccccccccccccchhhhhhcccccccceeecccCcchh
Q 003178 540 LDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (842)
Q Consensus 540 lDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l 579 (842)
+||||++.+++|...+..++..+++.+|+++||||+++.+
T Consensus 150 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 189 (207)
T 2gxq_A 150 LDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWA 189 (207)
T ss_dssp EESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHH
T ss_pred EEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHH
Confidence 9999999999999999999999999999999999999864
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=1.3e-28 Score=304.83 Aligned_cols=316 Identities=15% Similarity=0.139 Sum_probs=207.1
Q ss_pred eeeeeehhhhhhhhhhc--------------CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccc
Q 003178 399 YIQMTRVQEATLSACLE--------------GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (842)
Q Consensus 399 ~~~~t~iQ~~aI~~il~--------------g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PT 464 (842)
...|+|+|..|++.++. +++++++++||||||+++ ++++..+.. .. ...++|||+||
T Consensus 269 ~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~-~~-------~~~rvLvlvpr 339 (1038)
T 2w00_A 269 LLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE-LD-------FIDKVFFVVDR 339 (1038)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT-CT-------TCCEEEEEECG
T ss_pred cccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh-cC-------CCceEEEEeCc
Confidence 34699999999999876 368999999999999996 667644322 11 12379999999
Q ss_pred hhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccc
Q 003178 465 RELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (842)
Q Consensus 465 ReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh 544 (842)
++|+.|+.+.+..+... .+.++.+.......+....++|+|+||++|..++...... ..+..+.+||+||||
T Consensus 340 ~eL~~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~-~~~~~~~lvIiDEAH 411 (1038)
T 2w00_A 340 KDLDYQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDL-PVYNQQVVFIFDECH 411 (1038)
T ss_dssp GGCCHHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCC-GGGGSCEEEEEESCC
T ss_pred HHHHHHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccch-hccccccEEEEEccc
Confidence 99999999999887532 1223333322223333345799999999999876543111 123467899999999
Q ss_pred cccccccccchhhhhhcccccccceeecccCcchhh---------ccccceee----e--------ecc--cccc-c---
Q 003178 545 HLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV---------LKREHTYI----D--------TVG--LGSV-E--- 597 (842)
Q Consensus 545 ~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l~---------~~~~~~~i----~--------~v~--~~~~-~--- 597 (842)
++...+ .+..|...++ ..++++||||+..... +.....+. . .+. .... .
T Consensus 412 rs~~~~---~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~ 487 (1038)
T 2w00_A 412 RSQFGE---AQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFK 487 (1038)
T ss_dssp TTHHHH---HHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGH
T ss_pred hhcchH---HHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhh
Confidence 976433 3445666665 4789999999864311 00000000 0 000 0000 0
Q ss_pred ---------ccccccccccccCchhhHHHHHHHHhhhhcC--------CCCceEEEEecchhHHHHHHHHHHHHh-----
Q 003178 598 ---------TPVKIKQSCLVAPHELHFQILHHLLKEHILG--------TPDYKVIVFCSTGMVTSLLYLLLREMK----- 655 (842)
Q Consensus 598 ---------~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~--------~~~~kiIVF~~s~~~~~~l~~~L~~~~----- 655 (842)
....+.+...+. ...+...+...+..++.. ..+.++||||+|+..|..++..|.+.+
T Consensus 488 ~~~~e~d~~~~~~i~~~~~l~-~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~ 566 (1038)
T 2w00_A 488 SLETETDEKKLSAAENQQAFL-HPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAAN 566 (1038)
T ss_dssp HHHTCCCHHHHHHTCSTTTTT-CHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred hccccccHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcc
Confidence 000011111111 233333333333222211 134689999999999999999998876
Q ss_pred -------hhH-HHHhhc----------C----------cc-----------------------------hhhhhhhHHHh
Q 003178 656 -------MNV-REMYSR----------K----------PQ-----------------------------LYRDRISEEFR 678 (842)
Q Consensus 656 -------~~v-~~lhg~----------~----------~~-----------------------------~~R~~v~~~F~ 678 (842)
+.+ ..+|+. + ++ .+|..++++|+
T Consensus 567 ~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk 646 (1038)
T 2w00_A 567 KSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVK 646 (1038)
T ss_dssp TSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHH
T ss_pred cccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 233 344542 2 21 13778899999
Q ss_pred hcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCC----cceeEEecc
Q 003178 679 ASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKE----GEGVLLLAP 737 (842)
Q Consensus 679 ~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~----G~~i~ll~~ 737 (842)
+|+.+|||+|+++.+|+|+|.+ .|+.+|.|.+...|+|++||++|.+.. |.++.|...
T Consensus 647 ~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 647 NQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp TTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred cCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 9999999999999999999999 788999999999999999999998853 555555543
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-27 Score=290.79 Aligned_cols=315 Identities=14% Similarity=0.191 Sum_probs=215.8
Q ss_pred eeeehhhhhhhhhh----cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 401 QMTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 401 ~~t~iQ~~aI~~il----~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
.|+|+|.+++..++ .++++|++.+||+|||++.+.. +..+....... ..+||||| ..|+.|+.+++.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~-i~~l~~~~~~~-------~~~LIV~P-~sll~qW~~E~~ 306 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAF-ISWLIFARRQN-------GPHIIVVP-LSTMPAWLDTFE 306 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHH-HHHHHHHHSCC-------SCEEEECC-TTTHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHH-HHHHHHhcCCC-------CCEEEEEC-chHHHHHHHHHH
Confidence 58999999998776 6889999999999999985444 43333222111 13799999 678899999998
Q ss_pred HhhhcCCceeEEEEecceeeeecccc-----------ccCCCceEEecCccchhhhccccCCceEEEecceeeeeccccc
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKVDQRR-----------LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~-----------l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~ 545 (842)
+++ +++.+.+++|+......... .....++|+|+|++.+......-. ...+++|||||||+
T Consensus 307 ~~~---p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~-----~~~w~~vIvDEaH~ 378 (800)
T 3mwy_W 307 KWA---PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELG-----SIKWQFMAVDEAHR 378 (800)
T ss_dssp HHS---TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHH-----TSEEEEEEETTGGG
T ss_pred HHC---CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHh-----cCCcceeehhhhhh
Confidence 885 46677777776543221110 122347899999999976543211 12578999999999
Q ss_pred ccccccccchhhhhhcccccccceeecccCcch----h----h-ccc-----------------------------ccee
Q 003178 546 LLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE----L----V-LKR-----------------------------EHTY 587 (842)
Q Consensus 546 lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~----l----~-~~~-----------------------------~~~~ 587 (842)
+-+. .......+..+. ....+++|||+-.+ + . +.. ...+
T Consensus 379 lkn~--~s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~ 455 (800)
T 3mwy_W 379 LKNA--ESSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFI 455 (800)
T ss_dssp GCCS--SSHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGE
T ss_pred hcCc--hhHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHH
Confidence 8653 233444444553 34458899997322 0 0 000 0000
Q ss_pred eeecc-ccccccccccc-------------------------------------------------cccc----------
Q 003178 588 IDTVG-LGSVETPVKIK-------------------------------------------------QSCL---------- 607 (842)
Q Consensus 588 i~~v~-~~~~~~~~~l~-------------------------------------------------~~~~---------- 607 (842)
+.... ......|.... +.++
T Consensus 456 lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~ 535 (800)
T 3mwy_W 456 LRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQ 535 (800)
T ss_dssp EECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCC
T ss_pred hhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHH
Confidence 00000 00000000000 0000
Q ss_pred ---------------ccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhh
Q 003178 608 ---------------VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDR 672 (842)
Q Consensus 608 ---------------~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~ 672 (842)
......|+..|..+|..+. ..+.++||||....+++.+...|...++.+..+||.++..+|..
T Consensus 536 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~--~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~ 613 (800)
T 3mwy_W 536 KFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLK--KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRI 613 (800)
T ss_dssp CC----CCSHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHH
T ss_pred hcccccccHHHHHHHhhhcChHHHHHHHHHHHHh--hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHH
Confidence 0012345666677776653 34679999999999999999999999999999999999999999
Q ss_pred hhHHHhhcce---EEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCccee--EEecc
Q 003178 673 ISEEFRASKR---LILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGV--LLLAP 737 (842)
Q Consensus 673 v~~~F~~g~~---~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i--~ll~~ 737 (842)
+++.|+++.. .+|++|.+++.|||++.+++||+||+|+++..++||+||++|.|+...+. .|++.
T Consensus 614 ~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~ 683 (800)
T 3mwy_W 614 SIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSK 683 (800)
T ss_dssp HHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEET
T ss_pred HHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecC
Confidence 9999998654 48999999999999999999999999999999999999999999765544 34544
No 73
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.94 E-value=7.3e-27 Score=279.55 Aligned_cols=171 Identities=19% Similarity=0.177 Sum_probs=128.1
Q ss_pred ccccceeecccCcchhhccccceeeeecccccccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhH
Q 003178 564 RRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMV 643 (842)
Q Consensus 564 ~~~q~il~SATl~~~l~~~~~~~~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~ 643 (842)
...|+++||||++...... ....+.... ........ .+.+.+...+...+...|..... .+.++||||+|+..
T Consensus 379 ~~~q~i~~SAT~~~~~~~~-~~~~~~~~~-r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~--~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH-SGRVVEQII-RPTGLLDP---LVRVKPTENQILDLMEGIRERAA--RGERTLVTVLTVRM 451 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH-CSEEEEECS-CTTCCCCC---EEEEECSTTHHHHHHHHHHHHHH--TTCEEEEECSSHHH
T ss_pred hcCCEEEEecCCCHHHHHh-hhCeeeeee-ccCCCCCC---eEEEecccchHHHHHHHHHHHHh--cCCEEEEEECCHHH
Confidence 4678999999987642111 011111110 00000000 01112223344444444544332 35699999999999
Q ss_pred HHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecC-----CCChHHHHHH
Q 003178 644 TSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGI-----PPDREQYIHR 718 (842)
Q Consensus 644 ~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~-----P~s~~~yiQR 718 (842)
++.++..|...++.+..+||++++.+|..+++.|+.|++.|||||+++++|+|+|+|++||++|. |.+..+|+||
T Consensus 452 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr 531 (664)
T 1c4o_A 452 AEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 531 (664)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHH
T ss_pred HHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 8999999999
Q ss_pred hhcCCCCCCCcceeEEeccchhhh
Q 003178 719 LGRTGREGKEGEGVLLLAPWEEYF 742 (842)
Q Consensus 719 iGRaGR~G~~G~~i~ll~~~E~~~ 742 (842)
+|||||.+ .|.|++|+++.+..+
T Consensus 532 ~GRagR~~-~G~~i~~~~~~~~~~ 554 (664)
T 1c4o_A 532 IGRAARNA-RGEVWLYADRVSEAM 554 (664)
T ss_dssp HGGGTTST-TCEEEEECSSCCHHH
T ss_pred HCccCcCC-CCEEEEEEcCCCHHH
Confidence 99999986 899999998865443
No 74
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=3.4e-26 Score=273.55 Aligned_cols=321 Identities=17% Similarity=0.197 Sum_probs=210.5
Q ss_pred eeeehhhhhhhhhh---------cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHH
Q 003178 401 QMTRVQEATLSACL---------EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (842)
Q Consensus 401 ~~t~iQ~~aI~~il---------~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi 471 (842)
.|+|+|.+++..+. .+..+|++.+||+|||++.+..+ ..++....... ....++|||+|+ .|+.||
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i-~~l~~~~~~~~---p~~~~~LiV~P~-sll~qW 129 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLI-WTLLKQSPDCK---PEIDKVIVVSPS-SLVRNW 129 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHH-HHHHHCCTTSS---CSCSCEEEEECH-HHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHH-HHHHHhCcccc---CCCCcEEEEecH-HHHHHH
Confidence 48899999998874 35678999999999999855444 44443322110 011248999997 888999
Q ss_pred HHHHHHhhhcCCceeEEEEecceeeeec--ccccc-----CCCceEEecCccchhhhccccCCceEEEecceeeeecccc
Q 003178 472 AAEAIALLKNHDGIGVLTLVGGTRFKVD--QRRLE-----SDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (842)
Q Consensus 472 ~~~l~~l~~~~~~i~v~~l~Gg~~~~~~--~~~l~-----~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh 544 (842)
.+++.+++.. .+.+..+.|+...... ..... ...++|+|+|++.+......- ....+++||+||||
T Consensus 130 ~~E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l-----~~~~~~~vI~DEaH 202 (644)
T 1z3i_X 130 YNEVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVL-----HKGKVGLVICDEGH 202 (644)
T ss_dssp HHHHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTT-----TTSCCCEEEETTGG
T ss_pred HHHHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHh-----hcCCccEEEEECce
Confidence 9999998754 3556666665432111 11111 123689999999987654321 11357899999999
Q ss_pred cccccccccchhhhhhcccccccceeecccCcchh-------h--c-----c------ccc-------------------
Q 003178 545 HLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL-------V--L-----K------REH------------------- 585 (842)
Q Consensus 545 ~lld~gf~~~i~~Il~~l~~~~q~il~SATl~~~l-------~--~-----~------~~~------------------- 585 (842)
++.+.. ......+..+. ....+++|||+-.+- . + . ...
T Consensus 203 ~ikn~~--~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~ 279 (644)
T 1z3i_X 203 RLKNSD--NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAA 279 (644)
T ss_dssp GCCTTC--HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHH
T ss_pred ecCChh--hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHH
Confidence 987543 22223333333 345699999974330 0 0 0 000
Q ss_pred --------------eeee-ecccccccccccccccc--------------------------------------------
Q 003178 586 --------------TYID-TVGLGSVETPVKIKQSC-------------------------------------------- 606 (842)
Q Consensus 586 --------------~~i~-~v~~~~~~~~~~l~~~~-------------------------------------------- 606 (842)
..+. .........|....+.+
T Consensus 280 ~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~ 359 (644)
T 1z3i_X 280 GEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKL 359 (644)
T ss_dssp HHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH
Confidence 0000 00000000000000000
Q ss_pred ---------------------------------cccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHH
Q 003178 607 ---------------------------------LVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLRE 653 (842)
Q Consensus 607 ---------------------------------~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~ 653 (842)
.......|+..+..++.... ...+.++|||+++...++.+...|..
T Consensus 360 c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~-~~~~~k~lIFs~~~~~~~~l~~~l~~ 438 (644)
T 1z3i_X 360 CNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTR-TTTSDKVVLVSNYTQTLDLFEKLCRN 438 (644)
T ss_dssp HHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHH-HHCCCEEEEEESCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHh-hcCCCEEEEEEccHHHHHHHHHHHHH
Confidence 00001233444444444321 12467999999999999999999999
Q ss_pred HhhhHHHHhhcCcchhhhhhhHHHhhcce---EEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcc
Q 003178 654 MKMNVREMYSRKPQLYRDRISEEFRASKR---LILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGE 730 (842)
Q Consensus 654 ~~~~v~~lhg~~~~~~R~~v~~~F~~g~~---~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~ 730 (842)
.++.+..+||++++.+|..+++.|+++.. .+|++|+++++|||++++++||+||+|+++..|.|++||++|.|+...
T Consensus 439 ~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 518 (644)
T 1z3i_X 439 RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 518 (644)
T ss_dssp HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999999875 489999999999999999999999999999999999999999997665
Q ss_pred eeE--Eecc
Q 003178 731 GVL--LLAP 737 (842)
Q Consensus 731 ~i~--ll~~ 737 (842)
+.+ |++.
T Consensus 519 v~v~~lv~~ 527 (644)
T 1z3i_X 519 CYIYRLLST 527 (644)
T ss_dssp EEEEEEEET
T ss_pred eEEEEEEEC
Confidence 443 4443
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.92 E-value=2e-26 Score=275.65 Aligned_cols=320 Identities=20% Similarity=0.224 Sum_probs=207.4
Q ss_pred chhHhhhcccceeeeeehhhhh-----------hhhh---------hcCc--ceEEeeccCCCceee-----ehhHHHHH
Q 003178 388 PLTIKALTAAGYIQMTRVQEAT-----------LSAC---------LEGK--DAVVKAKTGTGKSIA-----FLLPAIEA 440 (842)
Q Consensus 388 ~~l~~~L~~~g~~~~t~iQ~~a-----------I~~i---------l~g~--dvii~A~TGSGKTla-----fllPil~~ 440 (842)
..+.+.|..+||.+...++... +|.- +-|. +-|-.=.+.||||+. +++|+.+.
T Consensus 170 ~~l~~~L~~~GY~r~~~V~~~GefavRG~iiDIfp~~~~~~p~RiefFgDeIesIr~FD~~Tqrs~~~~~~v~i~Pa~e~ 249 (661)
T 2d7d_A 170 NELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDRDHVAIFPASHF 249 (661)
T ss_dssp HHHHHHHHHTTCEECSSSCCTTEEEEETTEEEEECTTCSSEEEEEEESSSBEEEEEEEETTTCCEEEECSEEEECCSSSS
T ss_pred HHHHHHHHHcCCeeCCcCCCCceEEEeCceeEEeCCcccCceEEEEEcCceEEEEEEEccCcCcEeeccceEEEECCccc
Confidence 4577888889999877666543 1111 0111 112233567999975 78887554
Q ss_pred HHhhcccCcccccCceEEEEeccchhHHHHHHHHHHH---------hhhcC----Cce-eEEEEecceeeeeccccccCC
Q 003178 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA---------LLKNH----DGI-GVLTLVGGTRFKVDQRRLESD 506 (842)
Q Consensus 441 l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~---------l~~~~----~~i-~v~~l~Gg~~~~~~~~~l~~~ 506 (842)
+.... .+..++..++++|+.|+.. +.. +.... ..+ ....+.|+..+......+..+
T Consensus 250 ~~~~~---------~~~~~i~~i~~el~~qi~~-~~~~~~~~ea~~L~~~~~~~~e~l~~~~~~~G~e~~~~~~~~~~~g 319 (661)
T 2d7d_A 250 VTRAE---------KMEKAIQNIEKELEEQLKV-MHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPG 319 (661)
T ss_dssp CCCHH---------HHHHHHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHHHSCCTTGGGGHHHHTTCCTT
T ss_pred CcCHH---------HHHHHHHHHHHHHHHHHHH-HHhcchHHHHHHHHHHhHhHHHHhhhcCeeccchhHHHHHccccCC
Confidence 43211 1124577788889877643 111 10000 001 112345555554433333222
Q ss_pred CceEEecCccchhhhccccCCceEEEecceeeeecccccccc------------------ccccc-c-h----hhhhhcc
Q 003178 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD------------------LGFRK-D-V----ENIVDCL 562 (842)
Q Consensus 507 ~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld------------------~gf~~-~-i----~~Il~~l 562 (842)
+||++|++++... .+|||||+|+|++ .||.- . + ..+-...
T Consensus 320 ------~tpg~LlDyl~~~----------~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~ 383 (661)
T 2d7d_A 320 ------STPYTLLDYFPDD----------FMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFE 383 (661)
T ss_dssp ------CCCBCGGGGSCSS----------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHH
T ss_pred ------CCccHHHHHcccC----------cEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHh
Confidence 8999999998654 2799999999762 23321 0 0 0011122
Q ss_pred cccccceeecccCcchhhccccceeeeecccc-cccccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecch
Q 003178 563 PRRRQSLLFSATMPKELVLKREHTYIDTVGLG-SVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTG 641 (842)
Q Consensus 563 ~~~~q~il~SATl~~~l~~~~~~~~i~~v~~~-~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~ 641 (842)
+..+|+++||||++........ ..+...... ....+. +.+.+...+...+...|.... ..+.++||||+|+
T Consensus 384 ~~~~q~i~~SAT~~~~~~~~~~-~~~~~~~r~~~l~~p~-----i~v~~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 384 KHMHNIVYVSATPGPYEIEHTD-EMVEQIIRPTGLLDPL-----IDVRPIEGQIDDLIGEIQARI--ERNERVLVTTLTK 455 (661)
T ss_dssp HTCSEEEEECSSCCHHHHHHCS-SCEEECCCTTCCCCCE-----EEEECSTTHHHHHHHHHHHHH--TTTCEEEEECSSH
T ss_pred ccCCCEEEEecCCChhHHHhhh-CeeeeeecccCCCCCe-----EEEecccchHHHHHHHHHHHH--hcCCeEEEEECCH
Confidence 3468999999998754311101 111111000 000010 111222334444444454443 2456999999999
Q ss_pred hHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccccCCCCCCcceeEEecC-----CCChHHHH
Q 003178 642 MVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGI-----PPDREQYI 716 (842)
Q Consensus 642 ~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~-----P~s~~~yi 716 (842)
..++.++..|...++.+..+||++++.+|..+++.|+.|++.|||||+++++|+|+|+|++||++|. |.+..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhhcCCCCCCCcceeEEeccchhhh
Q 003178 717 HRLGRTGREGKEGEGVLLLAPWEEYF 742 (842)
Q Consensus 717 QRiGRaGR~G~~G~~i~ll~~~E~~~ 742 (842)
||+|||||. ..|.|++|+++.+..+
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~ 560 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSM 560 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHH
Confidence 999999998 6899999998865543
No 76
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.92 E-value=4.6e-25 Score=227.60 Aligned_cols=144 Identities=32% Similarity=0.456 Sum_probs=130.6
Q ss_pred ccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhh
Q 003178 600 VKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRA 679 (842)
Q Consensus 600 ~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~ 679 (842)
..+.+.++.++...|+..|..++... .++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++
T Consensus 4 i~~~~~~~~~~~~~k~~~l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~ 79 (212)
T 3eaq_A 4 VTYEEEAVPAPVRGRLEVLSDLLYVA----SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQ 79 (212)
T ss_dssp CCBCCEEEECCTTSHHHHHHHHHHHH----CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHS
T ss_pred cceeeeEEeCCHHHHHHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 34556667778889999999988754 46799999999999999999999999999999999999999999999999
Q ss_pred cceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCC
Q 003178 680 SKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 747 (842)
Q Consensus 680 g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~ 747 (842)
|+.+|||||+++++|+|+|+|++||+||+|.++..|+||+|||||.|+.|.|++|+++.+..+++.++
T Consensus 80 g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~ 147 (212)
T 3eaq_A 80 GEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALE 147 (212)
T ss_dssp SSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHH
T ss_pred CCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877766554
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.91 E-value=7.4e-25 Score=216.43 Aligned_cols=147 Identities=28% Similarity=0.499 Sum_probs=136.1
Q ss_pred ccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHH
Q 003178 598 TPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEF 677 (842)
Q Consensus 598 ~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F 677 (842)
.+..+.+.++.++...|+..|..++... .+.++||||+++..++.++..|...++.+..+||+|++.+|..+++.|
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f 81 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE----NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEF 81 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc----CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 3456888888899999999999988764 456999999999999999999999999999999999999999999999
Q ss_pred hhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCC
Q 003178 678 RASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 748 (842)
Q Consensus 678 ~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~ 748 (842)
++|+..|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.+++|+++.+..+++.+++
T Consensus 82 ~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~ 152 (163)
T 2hjv_A 82 KRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 152 (163)
T ss_dssp HTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHH
T ss_pred HcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988877766543
No 78
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=1e-24 Score=257.96 Aligned_cols=136 Identities=23% Similarity=0.234 Sum_probs=110.3
Q ss_pred cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
+|+ .||++|..+++.++.|+ |++++||+|||++|++|++...+.. ..++|++||++||.|.++++.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G-----------~qv~VvTPTreLA~Qdae~m~ 141 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTG-----------KGVHVVTVNDYLARRDAEWMG 141 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTC-----------SCCEEEESSHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhC-----------CCEEEEeCCHHHHHHHHHHHH
Confidence 688 89999999999999998 9999999999999999997544421 148999999999999999999
Q ss_pred HhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccch-hhhccccCC---ceEEEe---cceeeeeccccccc-c
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLM---GLKMLVLDEADHLL-D 548 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrL-l~~L~~~~~---~~~~L~---~l~~lVlDEAh~ll-d 548 (842)
.++.+. ++.+.+++||.+.. .+... .+++|+|+||++| +++|..+.. ....+. ++.++||||||.|+ +
T Consensus 142 ~l~~~l-GLsv~~i~Gg~~~~--~r~~a-y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD 217 (997)
T 2ipc_A 142 PVYRGL-GLSVGVIQHASTPA--ERRKA-YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID 217 (997)
T ss_dssp HHHHTT-TCCEEECCTTCCHH--HHHHH-HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS
T ss_pred HHHHhc-CCeEEEEeCCCCHH--HHHHH-cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh
Confidence 998865 89999999997643 22222 2489999999999 787765421 113456 89999999999987 4
Q ss_pred cc
Q 003178 549 LG 550 (842)
Q Consensus 549 ~g 550 (842)
.+
T Consensus 218 ea 219 (997)
T 2ipc_A 218 EA 219 (997)
T ss_dssp ST
T ss_pred CC
Confidence 43
No 79
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=1.3e-24 Score=235.68 Aligned_cols=144 Identities=31% Similarity=0.450 Sum_probs=128.6
Q ss_pred cccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhc
Q 003178 601 KIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRAS 680 (842)
Q Consensus 601 ~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g 680 (842)
.+.++++.++...|+..|..++... .+.++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~----~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g 77 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVA----SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG 77 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhc----CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC
Confidence 3567778888899999999998765 367999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCC
Q 003178 681 KRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 748 (842)
Q Consensus 681 ~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~ 748 (842)
+.+|||||+++++|+|+|+|++||+||+|.+...|+||+|||||.|+.|.|++|+++.+..+++.+++
T Consensus 78 ~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~ 145 (300)
T 3i32_A 78 EVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALER 145 (300)
T ss_dssp SCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHH
T ss_pred CceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988777666543
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=2.1e-24 Score=215.58 Aligned_cols=146 Identities=31% Similarity=0.435 Sum_probs=128.9
Q ss_pred ccccccccccccCchh-hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHH
Q 003178 598 TPVKIKQSCLVAPHEL-HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEE 676 (842)
Q Consensus 598 ~~~~l~~~~~~~~~~~-k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~ 676 (842)
++..+.|.++.++... |+..|..++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~ 79 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI----TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQR 79 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS----CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHH
Confidence 3557888888888755 888888888754 46799999999999999999999999999999999999999999999
Q ss_pred HhhcceEEEEeccccccCCCCCCcceeEEecCC------CChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCC
Q 003178 677 FRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------PDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 747 (842)
Q Consensus 677 F~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P------~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~ 747 (842)
|++|+..|||||+++++|+|+|++++||+||+| .+..+|+||+|||||.|+.|.+++|+.+.+..++..++
T Consensus 80 f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~ 156 (175)
T 2rb4_A 80 FRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQ 156 (175)
T ss_dssp HHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHH
T ss_pred HHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHH
Confidence 999999999999999999999999999999999 99999999999999999999999999998876665543
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.90 E-value=1.7e-24 Score=215.91 Aligned_cols=145 Identities=24% Similarity=0.330 Sum_probs=132.0
Q ss_pred cccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHh
Q 003178 599 PVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFR 678 (842)
Q Consensus 599 ~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~ 678 (842)
+..+.|+++.++...|...|..++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|+
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 78 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL----EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK 78 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS----CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC----CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHH
Confidence 456788888899999999999988764 4569999999999999999999999999999999999999999999999
Q ss_pred hcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccch-hhhhccCC
Q 003178 679 ASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWE-EYFLDDLK 747 (842)
Q Consensus 679 ~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E-~~~l~~L~ 747 (842)
+|+..|||||+++++|+|+|++++||+||+|.++..|+||+|||||.|+.|.+++|+++.+ ..+++.++
T Consensus 79 ~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~ 148 (172)
T 1t5i_A 79 DFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 148 (172)
T ss_dssp TTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHH
T ss_pred CCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999864 45555543
No 82
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.90 E-value=4.2e-24 Score=215.68 Aligned_cols=146 Identities=29% Similarity=0.398 Sum_probs=121.1
Q ss_pred ccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHH
Q 003178 598 TPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEF 677 (842)
Q Consensus 598 ~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F 677 (842)
.+..+.|.++.++...|+..|..++... .++.++||||+++..++.++..|...++.+..+||+|++.+|..+++.|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 4567889999999999999999998864 2467999999999999999999999999999999999999999999999
Q ss_pred hhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccC
Q 003178 678 RASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDL 746 (842)
Q Consensus 678 ~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L 746 (842)
++|+..|||||+++++|+|+|++++||+||+|.++.+|+||+|||||.|+.|.|++|+++.+..+++.+
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l 161 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 161 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHH
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887666554
No 83
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.89 E-value=4.2e-24 Score=211.32 Aligned_cols=143 Identities=32% Similarity=0.526 Sum_probs=125.4
Q ss_pred cccccccccCchh-hHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhh
Q 003178 601 KIKQSCLVAPHEL-HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRA 679 (842)
Q Consensus 601 ~l~~~~~~~~~~~-k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~ 679 (842)
.+.|.++.++... |...|..++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 78 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI----SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS 78 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT----TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 4667777777766 999999888864 45799999999999999999999999999999999999999999999999
Q ss_pred cceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCC
Q 003178 680 SKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 747 (842)
Q Consensus 680 g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~ 747 (842)
|+..|||||+++++|+|+|++++||+||+|.++.+|+||+|||||.|+.|.|++|+++.+..++..++
T Consensus 79 g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~ 146 (165)
T 1fuk_A 79 GSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELE 146 (165)
T ss_dssp TSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHH
T ss_pred CCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988876655543
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.89 E-value=7.9e-24 Score=214.83 Aligned_cols=144 Identities=26% Similarity=0.418 Sum_probs=126.9
Q ss_pred ccccccccccccCchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHH
Q 003178 598 TPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEF 677 (842)
Q Consensus 598 ~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F 677 (842)
....+.+.++.++...|+..|..++... +.++||||+++..++.++..|...++.+..+||+|++.+|..+++.|
T Consensus 26 ~~~~i~q~~~~~~~~~K~~~L~~~l~~~-----~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F 100 (191)
T 2p6n_A 26 ASLDVIQEVEYVKEEAKMVYLLECLQKT-----PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 100 (191)
T ss_dssp --CCSEEEEEECCGGGHHHHHHHHHTTS-----CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCcCceEEEEEcChHHHHHHHHHHHHhC-----CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 3456778888888889999988888652 45899999999999999999999999999999999999999999999
Q ss_pred hhcceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccc-hhhhhccC
Q 003178 678 RASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPW-EEYFLDDL 746 (842)
Q Consensus 678 ~~g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~-E~~~l~~L 746 (842)
++|+..|||||+++++|+|+|++++||+||+|.++..|+||+|||||.|+.|.|++|+++. +..+++.|
T Consensus 101 ~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l 170 (191)
T 2p6n_A 101 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDL 170 (191)
T ss_dssp HHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHH
T ss_pred hcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999875 44554444
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.80 E-value=2.3e-24 Score=214.36 Aligned_cols=144 Identities=31% Similarity=0.451 Sum_probs=131.4
Q ss_pred cccccccccCc-hhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhh
Q 003178 601 KIKQSCLVAPH-ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRA 679 (842)
Q Consensus 601 ~l~~~~~~~~~-~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~ 679 (842)
.+.+.++.++. ..|...|..++... .+.++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~----~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 78 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP----EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 78 (170)
Confidence 45677777777 78888888877653 45799999999999999999999999999999999999999999999999
Q ss_pred cceEEEEeccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeEEeccchhhhhccCCC
Q 003178 680 SKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 748 (842)
Q Consensus 680 g~~~VLVaTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ll~~~E~~~l~~L~~ 748 (842)
|+..|||||+++++|+|+|++++||+||+|.++..|+||+|||||.|+.|.+++|+.+.+..+++.+++
T Consensus 79 g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 147 (170)
T 2yjt_D 79 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 147 (170)
Confidence 999999999999999999999999999999999999999999999999999999999988777776655
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.86 E-value=7.8e-22 Score=231.13 Aligned_cols=312 Identities=20% Similarity=0.238 Sum_probs=169.3
Q ss_pred cceeeeeehhhhhhh----hhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHH
Q 003178 397 AGYIQMTRVQEATLS----ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (842)
Q Consensus 397 ~g~~~~t~iQ~~aI~----~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~ 472 (842)
.|| .++|+|.+++. ++..+++++++||||+|||++|++|++.. +.++||++||++|+.|+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------~~~~~~~~~t~~l~~q~~ 68 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------KKKVLIFTRTHSQLDSIY 68 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------TCEEEEEESCHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------CCcEEEEcCCHHHHHHHH
Confidence 467 79999999865 45678999999999999999999998642 126999999999999999
Q ss_pred HHHHHhhhcCCceeEEEEecceee--------ee------------------------ccc--------------cccCC
Q 003178 473 AEAIALLKNHDGIGVLTLVGGTRF--------KV------------------------DQR--------------RLESD 506 (842)
Q Consensus 473 ~~l~~l~~~~~~i~v~~l~Gg~~~--------~~------------------------~~~--------------~l~~~ 506 (842)
+++..+ ++.+..+.|.... .. ... +-...
T Consensus 69 ~~~~~l-----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~ 143 (540)
T 2vl7_A 69 KNAKLL-----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLK 143 (540)
T ss_dssp HHHGGG-----TCCEEEC---------------------------------------------------------CTTGG
T ss_pred HHHHhc-----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhh
Confidence 887764 3334333332210 00 000 00112
Q ss_pred CceEEecCccchhhhccccC-C---ceEEEecceeeeecccccccccc--ccc---------------------------
Q 003178 507 PCQILVATPGRLLDHIENKS-G---LSVRLMGLKMLVLDEADHLLDLG--FRK--------------------------- 553 (842)
Q Consensus 507 ~~~IIVaTPgrLl~~L~~~~-~---~~~~L~~l~~lVlDEAh~lld~g--f~~--------------------------- 553 (842)
.++|||+|+..|++.+.... . ....+....++||||||.|.+.. |..
T Consensus 144 ~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~ 223 (540)
T 2vl7_A 144 DKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKK 223 (540)
T ss_dssp GCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred cCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHH
Confidence 47999999999987543321 0 00013467899999999984310 000
Q ss_pred ------------------------------------chhhhh--------------------h----------------c
Q 003178 554 ------------------------------------DVENIV--------------------D----------------C 561 (842)
Q Consensus 554 ------------------------------------~i~~Il--------------------~----------------~ 561 (842)
.+..++ . .
T Consensus 224 l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 303 (540)
T 2vl7_A 224 VKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVK 303 (540)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 000000 0 0
Q ss_pred ccc--------ccc----ceeecccCcchhhccccc-e-eeeecccccccccccccccccccCchhhHHHHHHHHhhhhc
Q 003178 562 LPR--------RRQ----SLLFSATMPKELVLKREH-T-YIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHIL 627 (842)
Q Consensus 562 l~~--------~~q----~il~SATl~~~l~~~~~~-~-~i~~v~~~~~~~~~~l~~~~~~~~~~~k~~~L~~lL~~~~~ 627 (842)
.|. ... +|++|||+++.+.+.... . +....+.........+...|- .....+..+...|...+.
T Consensus 304 ~P~~~~~~l~~~~~~~~~~IltSATL~p~~~~~~~f~~~~~~~~g~~~~~~~~~l~s~f~--~r~~~~~~~~~~l~~~~~ 381 (540)
T 2vl7_A 304 VPSDVNQLIEDALNVKTFKVLMSGTLPESLTLTNSYKIVVNESYGRGEYYYCPNVTSELR--KRNSNIPIYSILLKRIYE 381 (540)
T ss_dssp ECSCHHHHHHHHTCCSSCEEEEESSCCTTCCCTTEEEEECCCC-CCCEEEECTTCCCCGG--GHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHhcCccCCeEEEcccCCCCcccchhcCCchhheecCCcceeccccCCCcc--cccCHHHHHHHHHHHHHH
Confidence 010 012 399999998821111111 0 000001000000011111110 011111334444444443
Q ss_pred CCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEE--eccccccCCCCCC----cc
Q 003178 628 GTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILV--TSDVSARGMDYPD----VT 701 (842)
Q Consensus 628 ~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLV--aTdv~arGlDip~----V~ 701 (842)
. .++++||||+|...++.++..|.. +. ...++.. ..|..+++.|+.+. .||+ ||+.+++|||+|+ ++
T Consensus 382 ~-~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~ 454 (540)
T 2vl7_A 382 N-SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFE 454 (540)
T ss_dssp T-CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEE
T ss_pred h-CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCccccc
Confidence 3 456999999999999999988764 22 2223332 46889999999865 5666 8999999999998 89
Q ss_pred eeEEecCCCCh------------------------------HHHHHHhhcCCCCCCCcceeEEecc
Q 003178 702 SVVQVGIPPDR------------------------------EQYIHRLGRTGREGKEGEGVLLLAP 737 (842)
Q Consensus 702 ~VI~yd~P~s~------------------------------~~yiQRiGRaGR~G~~G~~i~ll~~ 737 (842)
+||++++|... ..+.|.+||+-|....--+++++.+
T Consensus 455 ~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 455 SLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 99999998311 2236899999997644334555544
No 87
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.9e-21 Score=203.49 Aligned_cols=167 Identities=17% Similarity=0.251 Sum_probs=126.5
Q ss_pred hcccceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHH
Q 003178 394 LTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAA 473 (842)
Q Consensus 394 L~~~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~ 473 (842)
+...+...++++|.++++.+..|++++++|+||||||++|.+++++.+..... ...+++++++||++|+.|+++
T Consensus 54 ~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~------~~~~~~l~~~p~~~la~q~~~ 127 (235)
T 3llm_A 54 LQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR------AAECNIVVTQPRRISAVSVAE 127 (235)
T ss_dssp HHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC------GGGCEEEEEESSHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC------CCceEEEEeccchHHHHHHHH
Confidence 33334445789999999999999999999999999999999998887765432 123479999999999999999
Q ss_pred HHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccc-cccccc
Q 003178 474 EAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL-LDLGFR 552 (842)
Q Consensus 474 ~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~l-ld~gf~ 552 (842)
.+...+....+..+....... .......++|+|||||+|++++... +.++++|||||||++ ++.+|.
T Consensus 128 ~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~Ivv~Tpg~l~~~l~~~------l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 128 RVAFERGEEPGKSCGYSVRFE------SILPRPHASIMFCTVGVLLRKLEAG------IRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp HHHHTTTCCTTSSEEEEETTE------EECCCSSSEEEEEEHHHHHHHHHHC------CTTCCEEEECCTTSCCHHHHHH
T ss_pred HHHHHhccccCceEEEeechh------hccCCCCCeEEEECHHHHHHHHHhh------hcCCcEEEEECCccCCcchHHH
Confidence 988776544343333222111 1111244799999999999998652 678999999999997 788877
Q ss_pred -cchhhhhhcccccccceeecccCcchh
Q 003178 553 -KDVENIVDCLPRRRQSLLFSATMPKEL 579 (842)
Q Consensus 553 -~~i~~Il~~l~~~~q~il~SATl~~~l 579 (842)
..+..++... ++.|+++||||++.+.
T Consensus 196 ~~~l~~i~~~~-~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 196 LVVLRDVVQAY-PEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHHHHC-TTSEEEEEECSSCCHH
T ss_pred HHHHHHHHhhC-CCCeEEEEecCCCHHH
Confidence 3555565554 4789999999999875
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.83 E-value=9.7e-22 Score=201.17 Aligned_cols=170 Identities=22% Similarity=0.275 Sum_probs=117.2
Q ss_pred cceeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHH-HHHHH
Q 003178 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ-IAAEA 475 (842)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Q-i~~~l 475 (842)
.....|+++|.++++.++.++++++++|||+|||++|++++++.+...... ..+.++||++||++|+.| +.+.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-----~~~~~~lil~p~~~L~~q~~~~~~ 103 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEF 103 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-----TCCCCEEEEESSHHHHHHHHHHTH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-----cCCCcEEEEECHHHHHHHHHHHHH
Confidence 344579999999999999999999999999999999999998877654311 112369999999999999 77788
Q ss_pred HHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCc---eEEEecceeeeecccccccccccc
Q 003178 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL---SVRLMGLKMLVLDEADHLLDLGFR 552 (842)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~---~~~L~~l~~lVlDEAh~lld~gf~ 552 (842)
..+... ++.+..++|+.........+.. .++|+|+||++|..++...... ...+.++++|||||||++.+.++.
T Consensus 104 ~~~~~~--~~~v~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 180 (216)
T 3b6e_A 104 QPFLKK--WYRVIGLSGDTQLKISFPEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVY 180 (216)
T ss_dssp HHHHTT--TSCEEECCC---CCCCHHHHHH-HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CH
T ss_pred HHHhcc--CceEEEEeCCcccchhHHhhcc-CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcH
Confidence 887654 5678888887765443333322 3799999999999887654210 133578899999999999876654
Q ss_pred cchh-hhhhcc-------------cccccceeeccc
Q 003178 553 KDVE-NIVDCL-------------PRRRQSLLFSAT 574 (842)
Q Consensus 553 ~~i~-~Il~~l-------------~~~~q~il~SAT 574 (842)
..+. .++... .+..++|+||||
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 181 NNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 4442 222211 146789999998
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.79 E-value=6.7e-20 Score=196.82 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=120.5
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.|+++|.++++.++.+++.+++++||+|||+++++++...+.... .++||++||++|+.|+++++.+++.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~----------~~~lil~Pt~~L~~q~~~~l~~~~~ 182 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE----------GKILIIVPTTALTTQMADDFVDYRL 182 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS----------SEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC----------CeEEEEECCHHHHHHHHHHHHHhcc
Confidence 689999999999999888999999999999999888776554321 1599999999999999999998864
Q ss_pred cCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhh
Q 003178 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (842)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~ 560 (842)
. ....+..++++..... .....++|+|+||+.|...... .+.++++|||||||++.+. .+..++.
T Consensus 183 ~-~~~~~~~~~~~~~~~~----~~~~~~~I~v~T~~~l~~~~~~------~~~~~~~vIiDEaH~~~~~----~~~~il~ 247 (282)
T 1rif_A 183 F-SHAMIKKIGGGASKDD----KYKNDAPVVVGTWQTVVKQPKE------WFSQFGMMMNDECHLATGK----SISSIIS 247 (282)
T ss_dssp C-CGGGEEECSTTCSSTT----CCCTTCSEEEECHHHHTTSCGG------GGGGEEEEEEETGGGCCHH----HHHHHTT
T ss_pred c-ccceEEEEeCCCcchh----hhccCCcEEEEchHHHHhhHHH------HHhhCCEEEEECCccCCcc----cHHHHHH
Confidence 3 3556777777754321 1123479999999998765332 2457899999999999753 6677788
Q ss_pred cccccccceeecccCcch
Q 003178 561 CLPRRRQSLLFSATMPKE 578 (842)
Q Consensus 561 ~l~~~~q~il~SATl~~~ 578 (842)
.+.+..++++||||+++.
T Consensus 248 ~~~~~~~~l~lSATp~~~ 265 (282)
T 1rif_A 248 GLNNCMFKFGLSGSLRDG 265 (282)
T ss_dssp TCTTCCEEEEECSSCCTT
T ss_pred HhhcCCeEEEEeCCCCCc
Confidence 887789999999999765
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.78 E-value=2.4e-19 Score=210.61 Aligned_cols=131 Identities=19% Similarity=0.128 Sum_probs=96.7
Q ss_pred eeeehhhhhhhh----hhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 401 QMTRVQEATLSA----CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 401 ~~t~iQ~~aI~~----il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
.++|.|.+++.. +..|++++++||||+|||++|++|++. . +.++||++||++|+.|+.+++.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~-----------~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---V-----------KPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---H-----------CSEEEEEESSGGGHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---C-----------CCeEEEEcCCHHHHHHHHHHHH
Confidence 488999997764 557899999999999999999999986 1 1269999999999999999888
Q ss_pred HhhhcCCceeEEEEecceeeeecc---------------------------------c-----------------cccCC
Q 003178 477 ALLKNHDGIGVLTLVGGTRFKVDQ---------------------------------R-----------------RLESD 506 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~---------------------------------~-----------------~l~~~ 506 (842)
.+.... ++.+.++.|..++-... . +....
T Consensus 69 ~l~~~~-~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~ 147 (551)
T 3crv_A 69 KIREKR-NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLY 147 (551)
T ss_dssp TCCCSS-CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGG
T ss_pred HHhhhc-CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhh
Confidence 775543 67777777754421000 0 00012
Q ss_pred CceEEecCccchhhhccccCCceEEEecceeeeecccccccc
Q 003178 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548 (842)
Q Consensus 507 ~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld 548 (842)
.++|||+|++.|++.+.... +. ......+|||||||+|.+
T Consensus 148 ~adIVV~~~~~l~~~~~~~~-~~-~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREF-ID-IDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTT-SC-CCSTTEEEEETTGGGGGG
T ss_pred cCCEEEeCchHhcCHHHHHh-cC-CCcCCeEEEEecccchHH
Confidence 47999999999998754332 11 123678899999999876
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.67 E-value=8.5e-17 Score=190.96 Aligned_cols=84 Identities=20% Similarity=0.257 Sum_probs=67.0
Q ss_pred eeeehhhhhhh----hhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 401 QMTRVQEATLS----ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 401 ~~t~iQ~~aI~----~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
.|++.|.+.+. ++.+|++++++||||+|||++|++|++.++.... .+++|++||++|+.|+.+++.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~----------~kvli~t~T~~l~~Qi~~el~ 72 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK----------LKVLYLVRTNSQEEQVIKELR 72 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT----------CEEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC----------CeEEEECCCHHHHHHHHHHHH
Confidence 47889988875 4567999999999999999999999998876432 379999999999999999998
Q ss_pred HhhhcCCceeEEEEeccee
Q 003178 477 ALLKNHDGIGVLTLVGGTR 495 (842)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~ 495 (842)
.+.... .+.+..++|+.+
T Consensus 73 ~l~~~~-~~~~~~l~gr~~ 90 (620)
T 4a15_A 73 SLSSTM-KIRAIPMQGRVN 90 (620)
T ss_dssp HHHHHS-CCCEEECCCHHH
T ss_pred HHhhcc-CeEEEEEECCCc
Confidence 876543 566666666543
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.64 E-value=1.2e-16 Score=170.61 Aligned_cols=122 Identities=12% Similarity=0.146 Sum_probs=96.6
Q ss_pred CchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHH-hhhHHHHhhcCcchhhhhhhHHHhhc-ceE-EEE
Q 003178 610 PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-KMNVREMYSRKPQLYRDRISEEFRAS-KRL-ILV 686 (842)
Q Consensus 610 ~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~-~~~v~~lhg~~~~~~R~~v~~~F~~g-~~~-VLV 686 (842)
....|+..|..+|..... .+.++||||++...++.+...|... ++.+..+||++++.+|..+++.|+++ ... +|+
T Consensus 93 ~~s~K~~~L~~ll~~~~~--~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~ 170 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVL 170 (271)
T ss_dssp TTCHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEE
T ss_pred ccCHHHHHHHHHHHHHHh--CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEE
Confidence 456788888888887643 4579999999999999999999884 99999999999999999999999998 666 789
Q ss_pred eccccccCCCCCCcceeEEecCCCChHHHHHHhhcCCCCCCCcceeE
Q 003178 687 TSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVL 733 (842)
Q Consensus 687 aTdv~arGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ 733 (842)
+|+++++|||++++++||+||+|+++..|+||+||++|.|+.+.+.+
T Consensus 171 st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v 217 (271)
T 1z5z_A 171 SVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 217 (271)
T ss_dssp ECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEE
T ss_pred ehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEE
Confidence 99999999999999999999999999999999999999998877644
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.64 E-value=5e-17 Score=170.31 Aligned_cols=139 Identities=24% Similarity=0.229 Sum_probs=106.8
Q ss_pred eeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhh
Q 003178 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~ 479 (842)
..++++|.+++..++.+++++++++||+|||++++.++... . .++||++||++|+.|+++.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~----------~~~liv~P~~~L~~q~~~~~~~~- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----S----------TPTLIVVPTLALAEQWKERLGIF- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----C----------SCEEEEESSHHHHHHHHHHHGGG-
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----C----------CCEEEEeCCHHHHHHHHHHHHhC-
Confidence 46999999999999999999999999999999977766432 1 14899999999999999998873
Q ss_pred hcCCcee-EEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhh
Q 003178 480 KNHDGIG-VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (842)
Q Consensus 480 ~~~~~i~-v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~I 558 (842)
++. +..+.|+... ..+|+|+|++.+...+... ..++++|||||||++.+..+. .+
T Consensus 157 ----~~~~v~~~~g~~~~----------~~~i~v~T~~~l~~~~~~~------~~~~~llIiDEaH~l~~~~~~----~i 212 (237)
T 2fz4_A 157 ----GEEYVGEFSGRIKE----------LKPLTVSTYDSAYVNAEKL------GNRFMLLIFDEVHHLPAESYV----QI 212 (237)
T ss_dssp ----CGGGEEEESSSCBC----------CCSEEEEEHHHHHHTHHHH------TTTCSEEEEECSSCCCTTTHH----HH
T ss_pred ----CCCeEEEEeCCCCC----------cCCEEEEeHHHHHhhHHHh------cccCCEEEEECCccCCChHHH----HH
Confidence 455 6666665432 2689999999987665421 135889999999999876543 34
Q ss_pred hhcccccccceeecccCcch
Q 003178 559 VDCLPRRRQSLLFSATMPKE 578 (842)
Q Consensus 559 l~~l~~~~q~il~SATl~~~ 578 (842)
+..++ ..+++++|||++..
T Consensus 213 ~~~~~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 213 AQMSI-APFRLGLTATFERE 231 (237)
T ss_dssp HHTCC-CSEEEEEEESCC--
T ss_pred HHhcc-CCEEEEEecCCCCC
Confidence 44443 56789999998764
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.51 E-value=7.2e-08 Score=114.17 Aligned_cols=144 Identities=22% Similarity=0.341 Sum_probs=85.3
Q ss_pred eehhhhhhhhhhcCcceEEeeccCCCce--eeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 403 TRVQEATLSACLEGKDAVVKAKTGTGKS--IAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 403 t~iQ~~aI~~il~g~dvii~A~TGSGKT--lafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
++.|+++++.++.++.+++.|++||||| ++++++++..+.. ..+.++++++||..+|.++.+.+.....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---------~~~~~vll~APTg~AA~~L~e~~~~~~~ 221 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---------GERCRIRLAAPTGKAAARLTESLGKALR 221 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---------SCCCCEEEEBSSHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---------cCCCeEEEEeCChhHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999 5555665543211 1123689999999999999888776554
Q ss_pred cCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhhhh
Q 003178 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (842)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~Il~ 560 (842)
.. ++..... .. .......+ ..++-.+|+.. . +..... ....+++||||||+ |++ ...+..++.
T Consensus 222 ~l-~l~~~~~-~~--~~~~~~Ti----h~ll~~~~~~~-~-~~~~~~---~~l~~d~lIIDEAs-ml~---~~~~~~Ll~ 284 (608)
T 1w36_D 222 QL-PLTDEQK-KR--IPEDASTL----HRLLGAQPGSQ-R-LRHHAG---NPLHLDVLVVDEAS-MID---LPMMSRLID 284 (608)
T ss_dssp HS-SCCSCCC-CS--CSCCCBTT----TSCC-------------CTT---SCCSCSEEEECSGG-GCB---HHHHHHHHH
T ss_pred cC-CCCHHHH-hc--cchhhhhh----HhhhccCCCch-H-HHhccC---CCCCCCEEEEechh-hCC---HHHHHHHHH
Confidence 32 2211000 00 00000000 01111222211 0 111100 11268899999999 444 345677888
Q ss_pred cccccccceeec
Q 003178 561 CLPRRRQSLLFS 572 (842)
Q Consensus 561 ~l~~~~q~il~S 572 (842)
.++...|+|++.
T Consensus 285 ~l~~~~~liLvG 296 (608)
T 1w36_D 285 ALPDHARVIFLG 296 (608)
T ss_dssp TCCTTCEEEEEE
T ss_pred hCCCCCEEEEEc
Confidence 888888888864
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.49 E-value=6.7e-05 Score=88.03 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=48.5
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHH
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~ 474 (842)
.+++.|.+++..++.++.++|.|+.|+|||.+ +..++..+... +.++++++||...|..+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~----------g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESL----------GLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhc----------CCeEEEecCcHHHHHHhHhh
Confidence 47889999999999999999999999999985 33344333322 12589999999998877654
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.48 E-value=7.7e-05 Score=85.14 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=50.8
Q ss_pred ccceeeeeehhhhhhhhhhcC----c-ceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHH
Q 003178 396 AAGYIQMTRVQEATLSACLEG----K-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (842)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g----~-dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Q 470 (842)
.+.|..+++-|.+++..++.. + .++|.|+.|||||.+ +..++..+..... ..+++++||...|..
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~~---------~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTGE---------TGIILAAPTHAAKKI 89 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTTC---------CCEEEEESSHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcCC---------ceEEEecCcHHHHHH
Confidence 356778999999999877543 3 889999999999985 4455555544322 148999999988877
Q ss_pred HHHHH
Q 003178 471 IAAEA 475 (842)
Q Consensus 471 i~~~l 475 (842)
+.+.+
T Consensus 90 l~~~~ 94 (459)
T 3upu_A 90 LSKLS 94 (459)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 66544
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00015 Score=88.34 Aligned_cols=70 Identities=20% Similarity=0.309 Sum_probs=55.8
Q ss_pred eeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
+..+++.|.+|+..++.+.-++|.||.|||||.+ +..++..+.... +.++|+++||...|.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~-i~~~i~~l~~~~---------~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVT-SATIVYHLSKIH---------KDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHH-HHHHHHHHHHHH---------CCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHH-HHHHHHHHHhCC---------CCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4568899999999998877789999999999986 444555554421 125999999999999999888764
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.41 E-value=8.9e-05 Score=87.99 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=55.1
Q ss_pred eeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
...+++.|.+|+..++.+.-++|.||+|||||.+ +..++..+.... +.++|+++||...|.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~-~~~~i~~l~~~~---------~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQG---------NGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHH-HHHHHHHHHTSS---------SCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHH-HHHHHHHHHHcC---------CCeEEEEeCcHHHHHHHHHHHHhc
Confidence 3468899999999998888889999999999986 444555554321 125999999999999998887654
No 99
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.38 E-value=7e-05 Score=89.26 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=53.1
Q ss_pred eeeehhhhhhhhhhcCcc-eEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 401 QMTRVQEATLSACLEGKD-AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~d-vii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
.+++-|.+|+..++..++ .||+||.|||||.+ ++-++..+...+ .++|+++||...|.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t-i~~~I~~l~~~~----------~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT-VVEIILQAVKQG----------LKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH-HHHHHHHHHHTT----------CCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH-HHHHHHHHHhCC----------CeEEEEcCchHHHHHHHHHHHhc
Confidence 468889999999987765 57999999999987 455555555432 25999999999999998887654
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.29 E-value=0.00013 Score=88.61 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=55.3
Q ss_pred eeeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
...+++.|.+|+..++.+.-++|.||.|||||.+ +..++..+.... +.++|+++||...|.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~~~---------~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQG---------NGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHTTC---------SSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHHcC---------CCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4468899999999998888889999999999986 445555555321 125899999999999998887654
No 101
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.91 E-value=0.0014 Score=70.73 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=87.0
Q ss_pred CchhhHHHHHHHHhhhhcCCCCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc
Q 003178 610 PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 689 (842)
Q Consensus 610 ~~~~k~~~L~~lL~~~~~~~~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd 689 (842)
....|+..|..+|.... ..+.+++||++..++.+.+..+|...++.+..+.|..... +.+. .+....|.+.|.
T Consensus 106 ~~SGKf~~L~~LL~~l~--~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k~----~~~~~~i~Llts 178 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQ--EYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAAA----NDFSCTVHLFSS 178 (328)
T ss_dssp HTCHHHHHHHHHHHHHT--TSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEES
T ss_pred HcCccHHHHHHHHHHHH--hCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhhc----ccCCceEEEEEC
Confidence 36788999999888764 3578999999999999999999998899999999984432 2211 234555555566
Q ss_pred ccccCCC-----CCCcceeEEecCCCChHHH-HHHhhcCCCCC----CCcceeEEecc
Q 003178 690 VSARGMD-----YPDVTSVVQVGIPPDREQY-IHRLGRTGREG----KEGEGVLLLAP 737 (842)
Q Consensus 690 v~arGlD-----ip~V~~VI~yd~P~s~~~y-iQRiGRaGR~G----~~G~~i~ll~~ 737 (842)
...-|+| ....+.||.||..+++..= +|.+-|+.|.| +.-..|.|++.
T Consensus 179 ag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~ 236 (328)
T 3hgt_A 179 EGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAI 236 (328)
T ss_dssp SCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEET
T ss_pred CCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCC
Confidence 6666776 6789999999999999885 99888888874 23455666654
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.09 E-value=0.011 Score=65.69 Aligned_cols=74 Identities=14% Similarity=0.064 Sum_probs=55.7
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.++|+|...+..+...+-+++..+-+.|||.+.+.-++..+... ++..+++++||+..|..+.+.+..++.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~---------~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS---------SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 57999999998765566789999999999997555444333321 233689999999999988888888776
Q ss_pred cCC
Q 003178 481 NHD 483 (842)
Q Consensus 481 ~~~ 483 (842)
..+
T Consensus 234 ~~P 236 (385)
T 2o0j_A 234 LLP 236 (385)
T ss_dssp HSC
T ss_pred hCh
Confidence 544
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.73 E-value=0.014 Score=68.68 Aligned_cols=74 Identities=14% Similarity=0.064 Sum_probs=56.5
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.++|+|...+..+...+.+++..+-|+|||.+...-++..+... ++..+++++||+..|..+...+..++.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---------~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS---------SSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 58999999988775567789999999999997554444333322 123689999999999999988888876
Q ss_pred cCC
Q 003178 481 NHD 483 (842)
Q Consensus 481 ~~~ 483 (842)
..+
T Consensus 234 ~~p 236 (592)
T 3cpe_A 234 LLP 236 (592)
T ss_dssp TSC
T ss_pred hCh
Confidence 554
No 104
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.20 E-value=0.015 Score=68.85 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=53.7
Q ss_pred eeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhh
Q 003178 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~ 479 (842)
..+++-|.+++.. .+..++|.|+.|||||.+ ++.-+.++..... .++-++|++++|+.+|.++.+++..++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~-l~~ri~~l~~~~~------~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRV-LVHRIAWLMSVEN------CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHH-HHHHHHHHHHTSC------CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHH-HHHHHHHHHHhCC------CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 3578899999974 366789999999999997 4444444444321 112258999999999999999998876
Q ss_pred h
Q 003178 480 K 480 (842)
Q Consensus 480 ~ 480 (842)
+
T Consensus 79 ~ 79 (647)
T 3lfu_A 79 G 79 (647)
T ss_dssp C
T ss_pred c
Confidence 4
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.79 E-value=0.018 Score=56.22 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=15.8
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.|+.+++.||+|+|||..
T Consensus 37 ~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp GCCEEEECCSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 367899999999999984
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.49 E-value=0.062 Score=53.10 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=24.8
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccc
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PT 464 (842)
|+-.++.|++|+|||.. ++-++..+...+ .+++++.|.
T Consensus 3 g~i~vi~G~~gsGKTT~-ll~~~~~~~~~g----------~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTE-LLSFVEIYKLGK----------KKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHH-HHHHHHHHHHTT----------CEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHH-HHHHHHHHHHCC----------CeEEEEeec
Confidence 55678999999999996 333333332221 257888886
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.44 E-value=0.014 Score=65.57 Aligned_cols=44 Identities=32% Similarity=0.329 Sum_probs=31.5
Q ss_pred cceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 417 ~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
+-.+|.|+.|+|||.. +..+.... ..+|++||++++..+.+.+.
T Consensus 162 ~v~~I~G~aGsGKTt~-----I~~~~~~~-----------~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKE-----ILSRVNFE-----------EDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp EEEEEEECTTSCHHHH-----HHHHCCTT-----------TCEEEESCHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHH-----HHHHhccC-----------CeEEEeCCHHHHHHHHHHhh
Confidence 3457999999999994 22222110 25999999999988877663
No 108
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.36 E-value=0.028 Score=66.96 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=52.7
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.+++-|.+++... +..++|.|..|||||.+ ++--+.+++..... .+-++|+|+.|+.+|.++.+++...++
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~-l~~ri~~ll~~~~~------~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRV-ITNKIAHLIRGCGY------QARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHH-HHHHHHHHHHHHCC------CGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHH-HHHHHHHHHHhcCC------CHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 3788999999763 67889999999999997 33334344433111 112589999999999999999988764
No 109
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.36 E-value=0.012 Score=56.12 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=25.6
Q ss_pred cceeeeecccccccccccccchhhhhhccccc-ccceeecccCc
Q 003178 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRR-RQSLLFSATMP 576 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~-~q~il~SATl~ 576 (842)
+.++|||||++.+.... ...+..+++.+... ..+++++...+
T Consensus 83 ~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred CCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 46789999999866543 45555666555443 33255555543
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.04 E-value=0.056 Score=53.90 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=25.5
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccc
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PT 464 (842)
|+-.++.|++|||||.+ ++-++.++... +.+++++.|.
T Consensus 8 g~i~v~~G~mgsGKTT~-ll~~a~r~~~~----------g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEE-LIRRIRRAKIA----------KQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHH-HHHHHHHHHHT----------TCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHH-HHHHHHHHHHC----------CCEEEEEEec
Confidence 55678999999999986 34344333322 2258888886
No 111
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.91 E-value=0.056 Score=65.06 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=53.0
Q ss_pred eeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
.+++-|.+++... ...++|.|..|||||.+ ++.-+.+++.... ..+-.+|+|+.|+.+|.++.+++..+++
T Consensus 11 ~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~v-L~~ri~~ll~~~~------~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 11 HLNKEQQEAVRTT--EGPLLIMAGAGSGKTRV-LTHRIAYLMAEKH------VAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TSCHHHHHHHHCC--SSCEEEEECTTSCHHHH-HHHHHHHHHHTTC------CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hCCHHHHHHHhCC--CCCEEEEEcCCCCHHHH-HHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 4789999999763 56889999999999997 4444444444211 1122589999999999999999988764
No 112
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.61 E-value=0.083 Score=53.58 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=24.9
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccch
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTR 465 (842)
|+-.++.++.|||||++ ++-.+.+.... +.+++|+.|..
T Consensus 28 G~l~vitG~MgsGKTT~-lL~~a~r~~~~----------g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEE-LIRRVRRTQFA----------KQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHH-HHHHHHHHHHT----------TCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHH-HHHHHHHHHHC----------CCEEEEEEecc
Confidence 45567899999999986 33333333222 22588998865
No 113
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.95 E-value=0.058 Score=68.84 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=52.9
Q ss_pred eeeeehhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhh
Q 003178 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (842)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~ 479 (842)
..+|+-|.++|..- +++++|.|..|||||.+.+--++..+.... . ....-++|+|++|+..|..+.+++...+
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~-~----~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE-N----PIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS-S----CCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC-C----CCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 35799999999764 889999999999999973333333333211 0 0111258999999999999999988765
Q ss_pred h
Q 003178 480 K 480 (842)
Q Consensus 480 ~ 480 (842)
.
T Consensus 82 ~ 82 (1232)
T 3u4q_A 82 E 82 (1232)
T ss_dssp H
T ss_pred H
Confidence 3
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.58 E-value=0.12 Score=55.30 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=15.0
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+..+++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46899999999999984
No 115
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.17 E-value=0.12 Score=52.30 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=25.6
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccch
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTR 465 (842)
|.-.++.++.|+|||.. ++-.+.+....+ .+++|+.|..
T Consensus 28 G~I~vitG~M~sGKTT~-Llr~~~r~~~~g----------~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEE-LIRRLRRGIYAK----------QKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHTT----------CCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHH-HHHHHHHHHHcC----------CceEEEEecc
Confidence 55668999999999986 444444433222 2588888854
No 116
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.60 E-value=0.096 Score=52.76 Aligned_cols=18 Identities=6% Similarity=0.025 Sum_probs=15.7
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.+..+++.||+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 367899999999999984
No 117
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.80 E-value=0.25 Score=51.44 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=14.7
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
...+++.||+|+|||..
T Consensus 64 ~~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 35799999999999994
No 118
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.40 E-value=0.25 Score=50.45 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=25.3
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccch
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTR 465 (842)
|.-+++.|++|+|||++ ++-++..+.... .+++|+.|..
T Consensus 12 G~i~litG~mGsGKTT~-ll~~~~r~~~~g----------~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAE-LIRRLHRLEYAD----------VKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHH-HHHHHHHHHHTT----------CCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHH-HHHHHHHHHhcC----------CEEEEEEecc
Confidence 55678999999999996 333443333221 2478887754
No 119
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.18 E-value=0.27 Score=48.49 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=14.7
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
+.+++.|++|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999994
No 120
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=89.79 E-value=0.2 Score=50.03 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=25.7
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccc
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PT 464 (842)
++=.++.|++|||||.- ++-.+.+....+ .+++|+.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~~----------~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQIAQ----------YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHTT----------CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHcC----------CeEEEEccc
Confidence 56678999999999964 444444443322 258888886
No 121
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.61 E-value=0.39 Score=54.10 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=15.0
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
...+++.||+|+|||..
T Consensus 130 ~~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHL 146 (440)
T ss_dssp SCCEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999994
No 122
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=89.35 E-value=0.2 Score=51.36 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=25.1
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccch
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTR 465 (842)
|+-.++.|+.|+|||.+ ++-.+.+.... +.+++++.|..
T Consensus 19 g~l~v~~G~MgsGKTT~-lL~~~~r~~~~----------g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTE-LMRRVRRFQIA----------QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHH-HHHHHHHHHTT----------TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHC----------CCeEEEEeecC
Confidence 56678999999999986 33333222221 23588888864
No 123
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=89.30 E-value=0.28 Score=58.25 Aligned_cols=66 Identities=24% Similarity=0.332 Sum_probs=48.3
Q ss_pred eeeehhhhhhhhhhc----Cc-ceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHH
Q 003178 401 QMTRVQEATLSACLE----GK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~----g~-dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l 475 (842)
.|+..|..+|..+.. |. ..++.+.||||||++.. -++..+ .. .+|||+|+..+|.|++..+
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a-~~~~~~---~~----------~~lvv~~~~~~A~~l~~el 77 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVS-NLIKEV---NK----------PTLVIAHNKTLAGQLYSEF 77 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHH---CC----------CEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHH-HHHHHh---CC----------CEEEEECCHHHHHHHHHHH
Confidence 578889888876553 32 46788999999999521 122221 10 2799999999999999999
Q ss_pred HHhhh
Q 003178 476 IALLK 480 (842)
Q Consensus 476 ~~l~~ 480 (842)
..++.
T Consensus 78 ~~~~~ 82 (661)
T 2d7d_A 78 KEFFP 82 (661)
T ss_dssp HHHCT
T ss_pred HHHcC
Confidence 99974
No 124
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.26 E-value=0.33 Score=52.83 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.7
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
.+.+++.||+|+|||..
T Consensus 45 ~~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 35689999999999984
No 125
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=88.86 E-value=0.37 Score=50.26 Aligned_cols=53 Identities=13% Similarity=0.240 Sum_probs=30.1
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhh--hhcCcceEEeeccCCCceee
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSA--CLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~--il~g~dvii~A~TGSGKTla 432 (842)
..+|+++.-.+..++.|...-...+. ..+.+.. +...+.+++.||+|+|||..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLK--HPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHH--CHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhh--CHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 35678877666666666532100000 0111111 13456899999999999983
No 126
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=88.69 E-value=0.21 Score=58.87 Aligned_cols=114 Identities=20% Similarity=0.202 Sum_probs=69.4
Q ss_pred eeeehhhhhhhhhhc--CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 401 QMTRVQEATLSACLE--GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 401 ~~t~iQ~~aI~~il~--g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
.+|.-|.+++..++. ....++.|+-|.|||.+.-+ ++..+. . .++|.+|+.+-+..+.+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~-~~a~~~----~---------~~~vtAP~~~a~~~l~~~---- 236 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQ-LISRIA----G---------RAIVTAPAKASTDVLAQF---- 236 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHH-HHHHSS----S---------CEEEECSSCCSCHHHHHH----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHH-HHHHHH----h---------CcEEECCCHHHHHHHHHH----
Confidence 468889999988776 34578999999999974322 222221 0 268999999877654432
Q ss_pred hhcCCceeEEEEecceeeeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccccccccchhhh
Q 003178 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (842)
Q Consensus 479 ~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld~gf~~~i~~I 558 (842)
... .|-+..|..+...+ ...++||||||=.+.- +.+..+
T Consensus 237 ~~~---------------------------~i~~~~Pd~~~~~~----------~~~dlliVDEAAaIp~----pll~~l 275 (671)
T 2zpa_A 237 AGE---------------------------KFRFIAPDALLASD----------EQADWLVVDEAAAIPA----PLLHQL 275 (671)
T ss_dssp HGG---------------------------GCCBCCHHHHHHSC----------CCCSEEEEETGGGSCH----HHHHHH
T ss_pred hhC---------------------------CeEEeCchhhhhCc----------ccCCEEEEEchhcCCH----HHHHHH
Confidence 210 02344555433221 2478999999987532 334445
Q ss_pred hhcccccccceeecccCcc
Q 003178 559 VDCLPRRRQSLLFSATMPK 577 (842)
Q Consensus 559 l~~l~~~~q~il~SATl~~ 577 (842)
+... ..++||.|+..
T Consensus 276 l~~~----~~v~~~tTv~G 290 (671)
T 2zpa_A 276 VSRF----PRTLLTTTVQG 290 (671)
T ss_dssp HTTS----SEEEEEEEBSS
T ss_pred HhhC----CeEEEEecCCc
Confidence 4432 24777778643
No 127
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=88.19 E-value=0.53 Score=50.19 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=22.2
Q ss_pred cceeeeecccccccccccccchhhhhhccccccccee
Q 003178 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il 570 (842)
...+|||||+|.+........+..++...+...++|+
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~ 141 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIII 141 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEE
Confidence 4578999999998622233444455554444455555
No 128
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.07 E-value=1.5 Score=41.63 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=14.9
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
...+++.|++|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46789999999999984
No 129
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.90 E-value=0.94 Score=44.33 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=14.0
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
..+++.|++|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3599999999999984
No 130
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=87.78 E-value=0.24 Score=53.55 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=22.6
Q ss_pred eeehhhhhhhhhh----cCc---ceEEeeccCCCceee
Q 003178 402 MTRVQEATLSACL----EGK---DAVVKAKTGTGKSIA 432 (842)
Q Consensus 402 ~t~iQ~~aI~~il----~g~---dvii~A~TGSGKTla 432 (842)
++|+|.+++..+. +|+ .+++.||.|+|||..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~ 40 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDAL 40 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHH
Confidence 3577777765543 343 378999999999985
No 131
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=87.01 E-value=0.61 Score=49.81 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=15.4
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+..+++.||+|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999984
No 132
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=86.90 E-value=0.4 Score=51.65 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=18.9
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHH
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~ 442 (842)
+.++++.||+|+|||.+ +-.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~-v~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQL-VNDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHH-HHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 56899999999999995 333444443
No 133
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.36 E-value=0.28 Score=51.88 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=15.0
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+..+++.||+|+|||..
T Consensus 67 ~~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 45799999999999984
No 134
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=86.09 E-value=0.41 Score=57.91 Aligned_cols=77 Identities=9% Similarity=0.190 Sum_probs=66.0
Q ss_pred CceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-cccCCCCCCcceeEE
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-SARGMDYPDVTSVVQ 705 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-~arGlDip~V~~VI~ 705 (842)
+.+++|.+||+.-+..++..+.+. ++.+..+||+++..+|..++..+.+|...|+|+|.. +...+.+.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 468999999999999998888765 578999999999999999999999999999999963 445688899998885
Q ss_pred ec
Q 003178 706 VG 707 (842)
Q Consensus 706 yd 707 (842)
-.
T Consensus 497 DE 498 (780)
T 1gm5_A 497 DE 498 (780)
T ss_dssp ES
T ss_pred cc
Confidence 33
No 135
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=85.51 E-value=0.46 Score=51.65 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=13.8
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
.+++.||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 689999999999994
No 136
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=85.37 E-value=0.41 Score=51.83 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=15.1
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+..+++.||+|+|||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 56899999999999994
No 137
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=84.73 E-value=0.45 Score=51.01 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=29.8
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhh-hhh-hhhcCcceEEeeccCCCceee
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEA-TLS-ACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~-aI~-~il~g~dvii~A~TGSGKTla 432 (842)
..+|+++.-...+++.|...=.. |.... .+. .....+.+++.||+|+|||+.
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~---~~~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHH---HHHCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHHH---HHhCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 35688887777777776543110 00000 000 111235799999999999984
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.37 E-value=1.6 Score=46.96 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=15.1
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+..+++.|++|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999994
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.11 E-value=0.68 Score=49.85 Aligned_cols=40 Identities=10% Similarity=0.233 Sum_probs=25.5
Q ss_pred ecceeeeecccccccccccccchhhhhhcccccccceeecc
Q 003178 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~SA 573 (842)
.+.+++||||+|. ++......+..++...+....+|+.|.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~ 172 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCD 172 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEES
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 4678999999999 444445556666666555555555443
No 140
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=82.46 E-value=0.89 Score=51.01 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=27.8
Q ss_pred cceeeeeccccccc---ccccccchhhhhhcccccccceeecccCc
Q 003178 534 GLKMLVLDEADHLL---DLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (842)
Q Consensus 534 ~l~~lVlDEAh~ll---d~gf~~~i~~Il~~l~~~~q~il~SATl~ 576 (842)
++++||||++-++. +..+...+..+...+.+..-++.++|+..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG 224 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc
Confidence 57889999998653 33355556666665555555566677654
No 141
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=78.41 E-value=1.2 Score=44.30 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=15.9
Q ss_pred hcCcceEEeeccCCCceee
Q 003178 414 LEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTla 432 (842)
..|.-+++.|++|+|||..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEEcCCCCCHHHH
Confidence 3467788999999999984
No 142
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=77.12 E-value=1.2 Score=49.05 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=62.8
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH---hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccc----cCCCCCCcce
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM---KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA----RGMDYPDVTS 702 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~---~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~a----rGlDip~V~~ 702 (842)
.+.++||.+|++.-+..++..++.. ++.+..+||+.+..++......+..|...|+|+|.-.- .-++...+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 4568999999999999999999984 67899999999998888888999999999999996322 1245567888
Q ss_pred eEE
Q 003178 703 VVQ 705 (842)
Q Consensus 703 VI~ 705 (842)
||.
T Consensus 143 iVi 145 (414)
T 3oiy_A 143 VFV 145 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 143
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=76.92 E-value=1 Score=50.60 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=14.2
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
..-+++++++|+|||++
T Consensus 100 p~vIlivG~~G~GKTTt 116 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTT 116 (443)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CeEEEEECcCCCCHHHH
Confidence 34577999999999995
No 144
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=75.79 E-value=2.2 Score=44.89 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=13.7
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
.+++.||+|+|||..
T Consensus 48 ~~ll~G~~G~GKT~l 62 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTA 62 (327)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 599999999999984
No 145
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=74.94 E-value=7.8 Score=45.19 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=17.9
Q ss_pred hhhcCcceEEeeccCCCceee
Q 003178 412 ACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 412 ~il~g~dvii~A~TGSGKTla 432 (842)
.+..+..+++.+|+|+|||+.
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHH
Confidence 345688999999999999993
No 146
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=74.67 E-value=4.2 Score=40.26 Aligned_cols=72 Identities=11% Similarity=0.189 Sum_probs=52.4
Q ss_pred CceEEEEecchhHHHHHHHHHHHH-----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-c-----ccCCCCCC
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREM-----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-S-----ARGMDYPD 699 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-~-----arGlDip~ 699 (842)
..++||.+|++.-+..+++.++.. ++.+..++|+.+...+. ..+..+...|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999999988876 56777888887654443 3445567789999952 1 23466777
Q ss_pred cceeEE
Q 003178 700 VTSVVQ 705 (842)
Q Consensus 700 V~~VI~ 705 (842)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777774
No 147
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=73.15 E-value=0.61 Score=47.28 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=27.3
Q ss_pred cceeeeecccccccc-----cccccchhhhhhcccccccceeecccCc
Q 003178 534 GLKMLVLDEADHLLD-----LGFRKDVENIVDCLPRRRQSLLFSATMP 576 (842)
Q Consensus 534 ~l~~lVlDEAh~lld-----~gf~~~i~~Il~~l~~~~q~il~SATl~ 576 (842)
+.++||+||.-.+++ ......+..++..+...-.+++++.-..
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~ 182 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 568899999998876 3344446666666654444555554443
No 148
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=73.04 E-value=4.4 Score=38.38 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=47.5
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEe
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
++||.++++.-+..+++.+... ++.+..++|+...... ...+..+..+|+|+|. .+..+ +++.
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----ld~~ 102 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAARG----IDIE 102 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTTT----CCCS
T ss_pred cEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----Cchh
Confidence 4899999999999998887765 6678888887653322 2334456689999992 33332 3445
Q ss_pred cceeeee
Q 003178 534 GLKMLVL 540 (842)
Q Consensus 534 ~l~~lVl 540 (842)
++++||.
T Consensus 103 ~~~~Vi~ 109 (163)
T 2hjv_A 103 NISLVIN 109 (163)
T ss_dssp CCSEEEE
T ss_pred cCCEEEE
Confidence 5666664
No 149
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=72.88 E-value=2.6 Score=44.86 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=14.4
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
..+++.||+|+|||+.
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5799999999999993
No 150
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=72.85 E-value=1.3 Score=46.58 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=21.5
Q ss_pred cceeeeecccccccccccccchhhhhhcccccccceee
Q 003178 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~ 571 (842)
+..+|||||+|.+.... ...+..++...+....+|+.
T Consensus 102 ~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~ 138 (319)
T 2chq_A 102 PFKIIFLDEADALTADA-QAALRRTMEMYSKSCRFILS 138 (319)
T ss_dssp CCEEEEEETGGGSCHHH-HHTTGGGTSSSSSSEEEEEE
T ss_pred CceEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEE
Confidence 45789999999986532 23344444444444444443
No 151
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=72.23 E-value=2.8 Score=47.16 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=14.0
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
..+++.||+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 3689999999999993
No 152
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=72.18 E-value=2.3 Score=53.76 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=64.2
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEec-cccccCCCCCCcceeE
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTS-DVSARGMDYPDVTSVV 704 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaT-dv~arGlDip~V~~VI 704 (842)
.+.+++|.+||..-+.+++..+++. ++.+..+++..+..++..++.....|..+|+|+| ..+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 3568999999999999998888764 4567788998899899999999999999999999 4556668899999888
Q ss_pred E
Q 003178 705 Q 705 (842)
Q Consensus 705 ~ 705 (842)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 4
No 153
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=71.91 E-value=0.98 Score=45.01 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=30.8
Q ss_pred ecceeeeecccccccccccc--cchhhhhhcccccccceeecccCcchh
Q 003178 533 MGLKMLVLDEADHLLDLGFR--KDVENIVDCLPRRRQSLLFSATMPKEL 579 (842)
Q Consensus 533 ~~l~~lVlDEAh~lld~gf~--~~i~~Il~~l~~~~q~il~SATl~~~l 579 (842)
..+++|||||+-..+..++. +.+..++...|...-+|+.+--.|+++
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l 167 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDI 167 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHH
Confidence 36899999999776655533 345555666565666666666666654
No 154
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.82 E-value=3 Score=43.71 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=22.1
Q ss_pred ceeeeecccccccccccccchhhhhhcccccccceeec
Q 003178 535 LKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (842)
Q Consensus 535 l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~S 572 (842)
..+|||||+|.+.... ...+..++...+....+|+.|
T Consensus 108 ~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 108 HKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred ceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 5789999999986532 233444455444444445443
No 155
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=71.15 E-value=3.6 Score=46.73 Aligned_cols=91 Identities=13% Similarity=0.186 Sum_probs=55.8
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecc-
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG- 493 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg- 493 (842)
.+....+.+-||||||++ +.. +...... .+|||+|+...|.|+++.+..++.. . |..+..-
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~---l~~~~~~---------p~lvv~~~~~~A~~l~~~l~~~~~~--~--v~~fp~~e 74 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAE---IAERHAG---------PVVLIAPDMQNALRLHDEISQFTDQ--M--VMNLADWE 74 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHH---HHHHSSS---------CEEEEESSHHHHHHHHHHHHHTCSS--C--EEECCCCC
T ss_pred CCCeEEEeCCCchHHHHH--HHH---HHHHhCC---------CEEEEeCCHHHHHHHHHHHHhhCCC--c--EEEEeCcc
Confidence 456678999999999984 222 2222111 2799999999999999999988642 1 3322211
Q ss_pred ------eeeee--------ccccccCCCceEEecCccchhhhcc
Q 003178 494 ------TRFKV--------DQRRLESDPCQILVATPGRLLDHIE 523 (842)
Q Consensus 494 ------~~~~~--------~~~~l~~~~~~IIVaTPgrLl~~L~ 523 (842)
..... ....+......|||+|...|+..+.
T Consensus 75 ~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~~~ 118 (483)
T 3hjh_A 75 TLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVC 118 (483)
T ss_dssp SCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHBCCC
T ss_pred cccccccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhhcCC
Confidence 00000 0122333345699999888876554
No 156
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=71.13 E-value=2.9 Score=44.54 Aligned_cols=37 Identities=8% Similarity=0.146 Sum_probs=22.9
Q ss_pred cceeeeecccccccccccccchhhhhhcccccccceee
Q 003178 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~ 571 (842)
..+++||||||.|.... ...+.+.+...|+...+|+.
T Consensus 82 ~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~ 118 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLN 118 (305)
T ss_dssp SSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEE
T ss_pred CceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEE
Confidence 56889999999987543 23444555554444444443
No 157
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=70.25 E-value=5 Score=38.44 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=47.8
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEe
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
++||.++++..|..++..+... ++.+..++|+...... ...+..+..+|+|+|. .+..+ +++.
T Consensus 36 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G----id~~ 101 (175)
T 2rb4_A 36 QAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCARG----IDVK 101 (175)
T ss_dssp EEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCTT----TCCT
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhcC----CCcc
Confidence 6999999999999988877664 6678888888654322 2334456689999993 23222 3445
Q ss_pred cceeeee
Q 003178 534 GLKMLVL 540 (842)
Q Consensus 534 ~l~~lVl 540 (842)
.+++||.
T Consensus 102 ~~~~Vi~ 108 (175)
T 2rb4_A 102 QVTIVVN 108 (175)
T ss_dssp TEEEEEE
T ss_pred cCCEEEE
Confidence 6666663
No 158
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=69.97 E-value=5 Score=40.90 Aligned_cols=72 Identities=10% Similarity=0.108 Sum_probs=49.0
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-----c--ccCCCCC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----S--ARGMDYP 698 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-----~--arGlDip 698 (842)
...++||.+|++.-+..+++.++.. ++.+..++|+.+...+...+ .....|+|+|.- + ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3457999999999999999888776 45667778877654433222 346789999952 1 1345666
Q ss_pred CcceeEE
Q 003178 699 DVTSVVQ 705 (842)
Q Consensus 699 ~V~~VI~ 705 (842)
.+++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 6766663
No 159
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=69.82 E-value=3.7 Score=47.33 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.8
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.+..+++.+|+|+|||+.
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477899999999999993
No 160
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=69.75 E-value=1.5 Score=48.03 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=14.1
Q ss_pred CcceEE--eeccCCCceee
Q 003178 416 GKDAVV--KAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii--~A~TGSGKTla 432 (842)
+..++| .|+.|+|||..
T Consensus 50 ~~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp CEEEEEECTTCCSSSHHHH
T ss_pred CCEEEEeCcCcCCCCHHHH
Confidence 346788 99999999994
No 161
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=69.69 E-value=1.6 Score=40.62 Aligned_cols=20 Identities=5% Similarity=0.076 Sum_probs=17.0
Q ss_pred hhcCcceEEeeccCCCceee
Q 003178 413 CLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 413 il~g~dvii~A~TGSGKTla 432 (842)
+..+..+++.|++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44577899999999999984
No 162
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=69.61 E-value=2.7 Score=46.83 Aligned_cols=45 Identities=29% Similarity=0.316 Sum_probs=32.4
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHH
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELAS 469 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~ 469 (842)
....+++|.|+||||||.. +-+++..++..+ ..++|+=|..++..
T Consensus 51 ~~~~h~~i~G~tGsGKs~~-~~~li~~~~~~g----------~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 51 AEPRHLLVNGATGTGKSVL-LRELAYTGLLRG----------DRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGGCEEEEECTTSSHHHH-HHHHHHHHHHTT----------CEEEEEEETTHHHH
T ss_pred cCcceEEEECCCCCCHHHH-HHHHHHHHHHCC----------CcEEEEeCCCchhH
Confidence 3467999999999999996 444555554432 25888899888853
No 163
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=68.51 E-value=6.9 Score=36.98 Aligned_cols=70 Identities=13% Similarity=0.245 Sum_probs=47.1
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEe
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
++||.++++.-+..++..+... ++.+..++|+...... ...+..+...|+|+|. .+..+ +++.
T Consensus 32 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----~d~~ 97 (165)
T 1fuk_A 32 QAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARG----IDVQ 97 (165)
T ss_dssp CEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTTT----CCCC
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhcC----CCcc
Confidence 5899999999999988887764 5678888887653322 2334456689999992 23322 3345
Q ss_pred cceeeee
Q 003178 534 GLKMLVL 540 (842)
Q Consensus 534 ~l~~lVl 540 (842)
.+++||.
T Consensus 98 ~~~~Vi~ 104 (165)
T 1fuk_A 98 QVSLVIN 104 (165)
T ss_dssp SCSEEEE
T ss_pred cCCEEEE
Confidence 5666654
No 164
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=67.47 E-value=6.9 Score=38.92 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=47.8
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEe
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
++||.++|+.-+..+++.+... ++.+..++|+...... ...+..+..+|+|||. .+..+ +++.
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G----idi~ 98 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAARG----LDIP 98 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTTCS----SSCC
T ss_pred eEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhhcC----CCCc
Confidence 5899999999999988887765 6678888888654322 2334456689999993 33332 3445
Q ss_pred cceeee
Q 003178 534 GLKMLV 539 (842)
Q Consensus 534 ~l~~lV 539 (842)
++++||
T Consensus 99 ~v~~Vi 104 (212)
T 3eaq_A 99 QVDLVV 104 (212)
T ss_dssp CBSEEE
T ss_pred cCcEEE
Confidence 666666
No 165
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=67.14 E-value=1.7 Score=40.41 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=17.0
Q ss_pred hhcCcceEEeeccCCCceee
Q 003178 413 CLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 413 il~g~dvii~A~TGSGKTla 432 (842)
...+..|++.|++|+|||+.
T Consensus 21 a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHH
T ss_pred hCCCCCEEEECCCCCCHHHH
Confidence 34577899999999999984
No 166
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=66.98 E-value=6.1 Score=42.35 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=21.2
Q ss_pred cceeeeecccccccccccccchhhhhhcccccccceee
Q 003178 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~ 571 (842)
...+|||||+|.+.... ...+..++...+....+|+.
T Consensus 119 ~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~ 155 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (373)
T ss_dssp SSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEE
T ss_pred CeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEE
Confidence 45789999999986432 23344444444433333333
No 167
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=66.85 E-value=4.9 Score=40.24 Aligned_cols=71 Identities=8% Similarity=0.083 Sum_probs=48.3
Q ss_pred CCCceEEEEecchhHHHHHHHHHHHH-----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccc------ccCCCC
Q 003178 629 TPDYKVIVFCSTGMVTSLLYLLLREM-----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS------ARGMDY 697 (842)
Q Consensus 629 ~~~~kiIVF~~s~~~~~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~------arGlDi 697 (842)
....++||.+|++.-+..+++.++.. ++.+..++|+.+...+...+ ....|+|+|.-. ...+++
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~ 164 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNP 164 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCG
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccc
Confidence 34568999999999999999999876 45567778887655443332 247899998621 123455
Q ss_pred CCcceeE
Q 003178 698 PDVTSVV 704 (842)
Q Consensus 698 p~V~~VI 704 (842)
..+++||
T Consensus 165 ~~~~~lV 171 (230)
T 2oxc_A 165 GSIRLFI 171 (230)
T ss_dssp GGCCEEE
T ss_pred ccCCEEE
Confidence 5555555
No 168
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=66.80 E-value=4.8 Score=40.59 Aligned_cols=73 Identities=10% Similarity=0.080 Sum_probs=41.7
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHh----hhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc-----cccc-CCCCCC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMK----MNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-----VSAR-GMDYPD 699 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~----~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd-----v~ar-GlDip~ 699 (842)
.+.++||.+|++.-+..++..++..+ +.+..++|+.... .....+..+...|+|+|. .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 45689999999999999999988763 3444455554332 223444556678999993 2222 345555
Q ss_pred cceeEE
Q 003178 700 VTSVVQ 705 (842)
Q Consensus 700 V~~VI~ 705 (842)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666553
No 169
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=64.59 E-value=8.6 Score=37.34 Aligned_cols=56 Identities=5% Similarity=-0.008 Sum_probs=39.0
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH-----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM-----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 689 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd 689 (842)
...++||.+|++.-+..+++.++.. +..+..++|+.+....... + .+...|+|+|.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~ 130 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATP 130 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECH
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCH
Confidence 4458999999999999999988775 3456667777654432221 1 34567899885
No 170
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=64.42 E-value=8.6 Score=36.74 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=39.9
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCc
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATP 515 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTP 515 (842)
++||.++++.-+..++..+... ++.+..++|+...... ...+..+...|+|+|.
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 89 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS
T ss_pred cEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 4899999999999988887765 6678888887654322 2334456689999993
No 171
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=63.63 E-value=3.2 Score=52.09 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=62.8
Q ss_pred CCceEEEEecchhHHHHHHHHHHH---HhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccccc-c---CCCCCCcce
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLRE---MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA-R---GMDYPDVTS 702 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~---~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~a-r---GlDip~V~~ 702 (842)
.+.++||.+||+.-+.+++..|+. .++.+..+||+++..+|...+..+..|...|||+|.-.- . -+++.++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 456899999999999999999998 466889999999998889999999999999999996221 1 145667888
Q ss_pred eEE
Q 003178 703 VVQ 705 (842)
Q Consensus 703 VI~ 705 (842)
||.
T Consensus 200 lVi 202 (1104)
T 4ddu_A 200 VFV 202 (1104)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 172
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=63.34 E-value=9.1 Score=37.14 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=41.3
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeecc---ccccCCCceEEecCccchhhhccccCCceEEEe
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
++||.++++.-+..++..+... ++.+..+.|+....... ..+..+...|+|+|. .+..+ +++.
T Consensus 48 k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----ldi~ 113 (185)
T 2jgn_A 48 LTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LDIS 113 (185)
T ss_dssp CEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC---------------CCC
T ss_pred eEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhhcC----CCcc
Confidence 5899999999999988877664 67788888876543322 233445688999992 22222 3445
Q ss_pred cceeeee
Q 003178 534 GLKMLVL 540 (842)
Q Consensus 534 ~l~~lVl 540 (842)
.+++||.
T Consensus 114 ~~~~VI~ 120 (185)
T 2jgn_A 114 NVKHVIN 120 (185)
T ss_dssp SBSEEEE
T ss_pred cCCEEEE
Confidence 6666664
No 173
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=61.47 E-value=9.7 Score=40.86 Aligned_cols=73 Identities=11% Similarity=0.179 Sum_probs=54.0
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH-----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-c-----ccCCCCC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM-----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-S-----ARGMDYP 698 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-~-----arGlDip 698 (842)
...++||.||++.-+..++..+... ++.+..++|+.+..... ..+..+...|+|+|.- + ...+++.
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHH---HHHhcCCCCEEEECHHHHHHHHHcCCcccc
Confidence 3558999999999999999988876 57778888887655443 3345667789999952 1 2346778
Q ss_pred CcceeEE
Q 003178 699 DVTSVVQ 705 (842)
Q Consensus 699 ~V~~VI~ 705 (842)
.+++||.
T Consensus 152 ~~~~vVi 158 (391)
T 1xti_A 152 HIKHFIL 158 (391)
T ss_dssp TCSEEEE
T ss_pred ccCEEEE
Confidence 8888774
No 174
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=61.27 E-value=3.2 Score=43.04 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=20.4
Q ss_pred hhcCcceEEeeccCCCceeeehhHHHHHHH
Q 003178 413 CLEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 413 il~g~dvii~A~TGSGKTlafllPil~~l~ 442 (842)
+..|.-+++.||||||||+ ++-++..++
T Consensus 22 i~~g~~v~i~Gp~GsGKST--ll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKST--TIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHH--HHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHH--HHHHHHHhC
Confidence 4567788999999999999 444444443
No 175
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=60.21 E-value=6.7 Score=38.80 Aligned_cols=71 Identities=8% Similarity=0.088 Sum_probs=41.4
Q ss_pred CCCceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccc------ccCCCCC
Q 003178 629 TPDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS------ARGMDYP 698 (842)
Q Consensus 629 ~~~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~------arGlDip 698 (842)
....++||.+|++.-+..++..++.. ++.+..++|+.+...+...+ . ...|+|+|.-. ...+++.
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~iiv~Tp~~l~~~~~~~~~~~~ 154 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIVVGTPGRVFDNIQRRRFRTD 154 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCEEEECHHHHHHHHHhCCcchh
Confidence 34568999999999999999988875 45566677776544333222 1 26788888521 2334455
Q ss_pred CcceeE
Q 003178 699 DVTSVV 704 (842)
Q Consensus 699 ~V~~VI 704 (842)
.+++||
T Consensus 155 ~~~~iV 160 (224)
T 1qde_A 155 KIKMFI 160 (224)
T ss_dssp TCCEEE
T ss_pred hCcEEE
Confidence 555555
No 176
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=59.23 E-value=6.7 Score=39.54 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=49.4
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc-----ccc-cCCCCCC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-----VSA-RGMDYPD 699 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd-----v~a-rGlDip~ 699 (842)
.+.++||.+|++.-+..++..++.. ++.+..++|+.+...+...+. ....|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCCccc
Confidence 3557999999999999988888765 556777888877655443332 2478999995 222 2356667
Q ss_pred cceeEE
Q 003178 700 VTSVVQ 705 (842)
Q Consensus 700 V~~VI~ 705 (842)
+++||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777663
No 177
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=59.10 E-value=4.1 Score=40.70 Aligned_cols=35 Identities=20% Similarity=0.073 Sum_probs=27.1
Q ss_pred hhhhhhhhhhcCcceEEeeccCCCceeeehhHHHHHH
Q 003178 405 VQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV 441 (842)
Q Consensus 405 iQ~~aI~~il~g~dvii~A~TGSGKTlafllPil~~l 441 (842)
-|..++..+..|.-+.+.+|.|||||+ ++-++.-+
T Consensus 11 g~~~~l~~i~~Ge~~~liG~nGsGKST--Ll~~l~Gl 45 (208)
T 3b85_A 11 GQKHYVDAIDTNTIVFGLGPAGSGKTY--LAMAKAVQ 45 (208)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSTTH--HHHHHHHH
T ss_pred hHHHHHHhccCCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 356677777788889999999999999 45555444
No 178
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=59.03 E-value=6.5 Score=39.36 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=39.3
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHh----hhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMK----MNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 689 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~----~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd 689 (842)
.+.++||.+|++.-+..++..++..+ +.+..++|+.+.......+ +...|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 35589999999999999999998764 5667778876654433222 3578999985
No 179
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=58.88 E-value=8.8 Score=37.52 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=47.5
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEe
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
++||.++++.-+..++..+... ++.+..+.|+...... ...+..+...|+|+| +.+..+ +++.
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~G----ldi~ 121 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASKG----LDFP 121 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHTT----CCCC
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----CchhcC----CCcc
Confidence 5899999999999998888765 5678888887654322 233445568999999 233332 3445
Q ss_pred cceeeee
Q 003178 534 GLKMLVL 540 (842)
Q Consensus 534 ~l~~lVl 540 (842)
++++||.
T Consensus 122 ~v~~VI~ 128 (191)
T 2p6n_A 122 AIQHVIN 128 (191)
T ss_dssp CCSEEEE
T ss_pred cCCEEEE
Confidence 5666654
No 180
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=56.47 E-value=5.9 Score=46.17 Aligned_cols=59 Identities=10% Similarity=0.184 Sum_probs=53.2
Q ss_pred CceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHH--hhcceEEEEecc
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEF--RASKRLILVTSD 689 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F--~~g~~~VLVaTd 689 (842)
.+.+||.+|++.-+...+..|+..++.+..++|+++..++..++..+ ..+..+||++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 45899999999999999999999999999999999999888888877 578899999997
No 181
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=55.75 E-value=7.3 Score=47.04 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=14.5
Q ss_pred CcceEEeeccCCCcee
Q 003178 416 GKDAVVKAKTGTGKSI 431 (842)
Q Consensus 416 g~dvii~A~TGSGKTl 431 (842)
-+.+++.||.|+|||+
T Consensus 238 p~GILL~GPPGTGKT~ 253 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTL 253 (806)
T ss_dssp CCEEEEECCTTSCHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 3679999999999999
No 182
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=55.64 E-value=4.2 Score=46.59 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=16.2
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|..++|+||||||||+
T Consensus 258 ~~g~~i~I~GptGSGKTT 275 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTT 275 (511)
T ss_dssp HTTCCEEEEESTTSSHHH
T ss_pred hCCCEEEEECCCCCCHHH
Confidence 457789999999999999
No 183
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=55.00 E-value=4.4 Score=44.09 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.9
Q ss_pred hhcCcceEEeeccCCCcee
Q 003178 413 CLEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 413 il~g~dvii~A~TGSGKTl 431 (842)
+..|..++|+|+||||||+
T Consensus 172 i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHTTCCEEEEESSSSCHHH
T ss_pred HhcCCEEEEECCCCCCHHH
Confidence 4468899999999999999
No 184
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=54.38 E-value=6.2 Score=45.17 Aligned_cols=59 Identities=8% Similarity=-0.037 Sum_probs=53.9
Q ss_pred CceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 689 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd 689 (842)
.+.+||.+|++.-+......|+..++.+..+|+..+..++..+...+..|..+||++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 35899999999999999999999999999999999998888888999999999999985
No 185
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=54.07 E-value=4.8 Score=38.78 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.6
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
+.|+-++++||+|+|||.
T Consensus 3 ~~g~~i~i~GpsGsGKST 20 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRH 20 (180)
T ss_dssp CCCCEEEEECCTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 346778899999999999
No 186
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=53.99 E-value=5.1 Score=39.35 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=18.0
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHH
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~ 442 (842)
.|+-++++||+|+|||. ++-++..++
T Consensus 3 ~g~~i~lvGpsGaGKST--Ll~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKST--LLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHH--HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHhhC
Confidence 46778999999999999 444444433
No 187
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=53.92 E-value=10 Score=39.89 Aligned_cols=69 Identities=7% Similarity=0.001 Sum_probs=43.7
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHh-----hhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccc------c-cCCCC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMK-----MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS------A-RGMDY 697 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~-----~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~------a-rGlDi 697 (842)
...++||.+||+.-+..++..++.++ +.+..++++.....+. .....|||||.-. . ..+++
T Consensus 161 ~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l 233 (300)
T 3fmo_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDP 233 (300)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCG
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCCh
Confidence 34479999999999999999888763 3344445544332211 2345788888622 1 24566
Q ss_pred CCcceeEE
Q 003178 698 PDVTSVVQ 705 (842)
Q Consensus 698 p~V~~VI~ 705 (842)
..+.+||.
T Consensus 234 ~~l~~lVl 241 (300)
T 3fmo_B 234 KKIKVFVL 241 (300)
T ss_dssp GGCSEEEE
T ss_pred hhceEEEE
Confidence 67776663
No 188
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=53.62 E-value=8.7 Score=38.36 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=15.7
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.|.-+++.|++|+|||..
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIF 39 (247)
T ss_dssp TTCEEEEEECTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467789999999999995
No 189
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=52.42 E-value=11 Score=36.67 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=48.0
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH--hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-----cc-cCCCCCCcc
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----SA-RGMDYPDVT 701 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-----~a-rGlDip~V~ 701 (842)
.+.++||.+|++.-+..+++.++.. .+.+..++|+.+.......+ .....|+|+|.- +. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL----LRGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH----HHCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh----hCCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3568999999999999999999877 34566777776654433222 135779999951 11 235556666
Q ss_pred eeEE
Q 003178 702 SVVQ 705 (842)
Q Consensus 702 ~VI~ 705 (842)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 190
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=52.39 E-value=3.5 Score=54.46 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=15.8
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
++.+++.+|+|+|||..
T Consensus 1427 g~~vll~GppGtGKT~L 1443 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTL 1443 (2050)
T ss_dssp TSEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 68999999999999996
No 191
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=52.28 E-value=5.8 Score=44.19 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=19.3
Q ss_pred hhhhhhhhhhc--CcceEEeeccCCCcee
Q 003178 405 VQEATLSACLE--GKDAVVKAKTGTGKSI 431 (842)
Q Consensus 405 iQ~~aI~~il~--g~dvii~A~TGSGKTl 431 (842)
-+..++..++. +.-++|.||||||||+
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTT 182 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKST 182 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHH
Confidence 34445554443 4567899999999999
No 192
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=52.16 E-value=5.3 Score=43.67 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=20.3
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHHHh
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
..|..++++||||||||+ ++-++..++.
T Consensus 134 ~~g~~i~ivG~~GsGKTT--ll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKST--TIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHH--HHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHHhhcC
Confidence 457788999999999999 4444444443
No 193
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=51.28 E-value=4.5 Score=42.59 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=29.8
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhh-hhhcCcceEEeeccCCCceee
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLS-ACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~-~il~g~dvii~A~TGSGKTla 432 (842)
..+|+++.-...+++.|...-.. +......... .+..++.+++.||+|+|||+.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~-~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQY-PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHH-HHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 35688876666666666542100 0000000000 123367899999999999993
No 194
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=51.28 E-value=7.9 Score=38.46 Aligned_cols=72 Identities=8% Similarity=0.024 Sum_probs=45.4
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH---hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc------cccCCCCCCc
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM---KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV------SARGMDYPDV 700 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~---~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv------~arGlDip~V 700 (842)
.+.++||.+|++.-+..++..++.. ++.+..++|+.+...+... +. ....|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4568999999999999999999886 4566667777654433322 22 34789999952 1234566677
Q ss_pred ceeEE
Q 003178 701 TSVVQ 705 (842)
Q Consensus 701 ~~VI~ 705 (842)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 76663
No 195
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=49.59 E-value=11 Score=47.70 Aligned_cols=66 Identities=15% Similarity=0.254 Sum_probs=42.5
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHHHhhcc-cCcccccCceEEEEeccchhHHHHHHHHHHHhhh
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATS-SSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l~~~~~-~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~ 480 (842)
+.|. .+|.|.-|||||.+..--++..+...+. ........+-.+|+|+=|+..|.++.+++...+.
T Consensus 15 l~g~-~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 15 LQGE-RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CSSC-EEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCCC-EEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 3454 4999999999999744444444433210 0000011223599999999999999998887654
No 196
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=49.38 E-value=6.4 Score=42.79 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.1
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.+..++|.||||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 355788999999999993
No 197
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=48.79 E-value=5.2 Score=42.98 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccCCCCCCchHHHHHHHHHHHhhchhcccCCCCCCCc
Q 003178 46 MHEKKAKEKEKRLLEQEKQLYQARVRSQIRTKLFDKADPDSETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDDGPVK 124 (842)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (842)
|-|+|.+++.+.-+..|+.|..+-..+--+ ..+..|..-+..++..|+.-...+++.
T Consensus 1 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~----------------------~~~~~l~~~l~d~~v~dI~in~~~~v~ 57 (330)
T 2pt7_A 1 MTEDRLSAEDKKFLEVERALKEAALNPLRH----------------------ATEELFGDFLKMENITEICYNGNKVVW 57 (330)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHTSSSEEEEEECSSSEEE
T ss_pred CchhhhhhcchhHHHHHHHHHHHHHHHHHH----------------------hCccchHHHhcCCCCeEEEEcCCCEEE
Confidence 678888888888888888777665543211 123344444556777787766666553
No 198
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.75 E-value=5.3 Score=44.70 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=32.4
Q ss_pred cccccccCCCchhHhhhccc---ceeeeeehhhhhhhhhhcCcceEEeeccCCCceee
Q 003178 378 QKRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~---g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTla 432 (842)
..+|++.+--+.+++.|.+. -+..|.-++...++ ..+.+++.||.|+|||+.
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 45799988777777777542 11112222222221 246899999999999993
No 199
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=48.54 E-value=14 Score=38.91 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=46.8
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEe
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
++||.|+|+.-+..++..+... ++.+..++|+...... ...+..+..+|+|||. .+..+ +++.
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~~G----idi~ 95 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAARG----LDIP 95 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTTCS----TTCC
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhhcC----cccc
Confidence 4899999999988888776654 6778888888654322 2334456689999993 33332 3345
Q ss_pred cceeee
Q 003178 534 GLKMLV 539 (842)
Q Consensus 534 ~l~~lV 539 (842)
++++||
T Consensus 96 ~v~~VI 101 (300)
T 3i32_A 96 QVDLVV 101 (300)
T ss_dssp CCSEEE
T ss_pred ceeEEE
Confidence 667666
No 200
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=48.27 E-value=15 Score=37.66 Aligned_cols=72 Identities=13% Similarity=0.211 Sum_probs=47.0
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHh----hhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc------cc-ccCCCCC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMK----MNVREMYSRKPQLYRDRISEEFRASKRLILVTSD------VS-ARGMDYP 698 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~----~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd------v~-arGlDip 698 (842)
.+.++||.+|++.-+..++..+++.. ..+..++|+...... ...+..+ ..|+|+|. +. ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE---AQKLGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHH---HHHHHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHH---HHHhcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 35689999999999999999998763 344556666544332 2233333 78999994 11 1245667
Q ss_pred CcceeEE
Q 003178 699 DVTSVVQ 705 (842)
Q Consensus 699 ~V~~VI~ 705 (842)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7776663
No 201
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=47.68 E-value=6.9 Score=38.03 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=15.0
Q ss_pred cCcceEEeeccCCCcee
Q 003178 415 EGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTl 431 (842)
.|.-+.+.||+|||||+
T Consensus 6 ~g~ii~l~Gp~GsGKST 22 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTS 22 (205)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECcCCCCHHH
Confidence 46678899999999999
No 202
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=53.21 E-value=3.9 Score=39.01 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=46.1
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEe
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
++||.++++.-|..+++.+... ++.+..++|+...... ...+..+..+|+|+|. .+..+ +++.
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----id~~ 97 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAARG----IDIP 97 (170)
Confidence 5899999999998888777664 5667777777554322 2344455678999992 23222 4455
Q ss_pred cceeeee
Q 003178 534 GLKMLVL 540 (842)
Q Consensus 534 ~l~~lVl 540 (842)
.+++||.
T Consensus 98 ~~~~Vi~ 104 (170)
T 2yjt_D 98 DVSHVFN 104 (170)
Confidence 6666664
No 203
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=46.54 E-value=6 Score=40.19 Aligned_cols=51 Identities=12% Similarity=0.125 Sum_probs=28.7
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhhh--cCcceEEeeccCCCcee
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il--~g~dvii~A~TGSGKTl 431 (842)
..+|+++.-.+.+...+...-.. +. ...++..+- -.+.+++.||+|+|||+
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~-~~--~~~~~~~~~~~~~~g~ll~G~~G~GKTt 64 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEF-LK--NPSRFHEMGARIPKGVLLVGPPGVGKTH 64 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHH-HH--CHHHHHHTTCCCCSEEEEECCTTSSHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH-HH--CHHHHHHcCCCCCCeEEEECCCCCCHHH
Confidence 35678876666666666543211 00 112222211 12348999999999998
No 204
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=46.51 E-value=7 Score=36.85 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.9
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
...+++.|++|+|||..
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46799999999999984
No 205
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=46.00 E-value=14 Score=36.38 Aligned_cols=71 Identities=8% Similarity=0.082 Sum_probs=44.0
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH--------hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-----ccc-CC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM--------KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----SAR-GM 695 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~--------~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-----~ar-Gl 695 (842)
.+.++||.+|++.-+..+++.+++. ++.+..++|+.+.......+ .....|+|+|.- +.. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL----NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCC----SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHc----CCCCCEEEeCHHHHHHHHHcCCC
Confidence 4568999999999999999888775 24455566665543332221 235678888841 112 24
Q ss_pred CCCCcceeE
Q 003178 696 DYPDVTSVV 704 (842)
Q Consensus 696 Dip~V~~VI 704 (842)
++..+++||
T Consensus 147 ~~~~~~~lV 155 (219)
T 1q0u_A 147 DVHTAHILV 155 (219)
T ss_dssp CGGGCCEEE
T ss_pred CcCcceEEE
Confidence 455555554
No 206
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=45.88 E-value=7.7 Score=38.50 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=16.0
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
+.|+-++++||+|+|||.
T Consensus 17 ~~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSH 34 (197)
T ss_dssp CSCCEEEEECCTTSSHHH
T ss_pred CCCCEEEEECcCCCCHHH
Confidence 357788999999999999
No 207
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=45.48 E-value=15 Score=40.84 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=36.1
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCc
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATP 515 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTP 515 (842)
++||.||+++-|..+++.+... ++.+..++|.. .......+..+..+|+|||.
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKT-FEREYPTIKQKKPDFILATD 231 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSS-CC--------CCCSEEEESS
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchh-HHHHHhhhcCCCceEEEECC
Confidence 5899999999999999888765 56788888743 33344556667789999994
No 208
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=44.98 E-value=8.9 Score=36.55 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=16.4
Q ss_pred hcCcceEEeeccCCCceee
Q 003178 414 LEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTla 432 (842)
..++.+++.|+.|||||.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCCEEEECSTTSSHHHH
T ss_pred ccCCeEEEEeCCCCCHHHH
Confidence 4567899999999999994
No 209
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=44.55 E-value=12 Score=37.49 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=45.9
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-----ccc---CCCC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----SAR---GMDY 697 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-----~ar---GlDi 697 (842)
.+.++||.+|++.-+..++..++.. ++.+..++++.....+ ......+...|+|+|.- +.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3457999999999999999998876 4445555554322211 11222456789999942 111 4667
Q ss_pred CCcceeEE
Q 003178 698 PDVTSVVQ 705 (842)
Q Consensus 698 p~V~~VI~ 705 (842)
.++++||.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 77777663
No 210
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=44.11 E-value=9.4 Score=37.57 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=19.2
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHh
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
.|.-+.|.|++|||||+ ++-+|..++.
T Consensus 21 ~g~~v~I~G~sGsGKST--l~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKST--LSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHH--HHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHH--HHHHHHHHHh
Confidence 35567799999999998 4445544443
No 211
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=44.10 E-value=16 Score=39.28 Aligned_cols=70 Identities=24% Similarity=0.294 Sum_probs=49.2
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEe
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
++||.++++.-|..+++.+... ++.+..++|+...... ...+..+..+|+|||. .+..+ +++.
T Consensus 268 ~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idip 333 (412)
T 3fht_A 268 QAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARG----IDVE 333 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTSS----CCCT
T ss_pred CEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccccC----CCcc
Confidence 6999999999999998888765 5677888888654322 2334456689999993 34333 4556
Q ss_pred cceeeee
Q 003178 534 GLKMLVL 540 (842)
Q Consensus 534 ~l~~lVl 540 (842)
++++||.
T Consensus 334 ~~~~Vi~ 340 (412)
T 3fht_A 334 QVSVVIN 340 (412)
T ss_dssp TEEEEEE
T ss_pred CCCEEEE
Confidence 6777763
No 212
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=43.74 E-value=8.6 Score=37.94 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.9
Q ss_pred cCcceEEeeccCCCcee
Q 003178 415 EGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTl 431 (842)
.|+-+++.||+|+|||.
T Consensus 7 ~g~~i~l~GpsGsGKsT 23 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGT 23 (208)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECcCCCCHHH
Confidence 46678899999999999
No 213
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=43.56 E-value=11 Score=37.64 Aligned_cols=18 Identities=39% Similarity=0.621 Sum_probs=15.2
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.|.-+++.|++|+|||..
T Consensus 29 ~G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 356789999999999974
No 214
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=43.39 E-value=9.5 Score=38.05 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=15.5
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|+-+.+.||+|+|||.
T Consensus 21 ~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp -CCCCEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 357788899999999999
No 215
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=43.25 E-value=9.7 Score=37.35 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=17.2
Q ss_pred cceEEeeccCCCceeeehhHHHHHHHhh
Q 003178 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKA 444 (842)
Q Consensus 417 ~dvii~A~TGSGKTlafllPil~~l~~~ 444 (842)
+-+|++||.|+|||. ++..|+..
T Consensus 2 RpIVi~GPSG~GK~T-----l~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKST-----LLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHH-----HHHHHHHH
T ss_pred CEEEEECCCCCCHHH-----HHHHHHHh
Confidence 458999999999999 34555443
No 216
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=43.15 E-value=18 Score=42.85 Aligned_cols=52 Identities=12% Similarity=0.219 Sum_probs=39.8
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecC
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVAT 514 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaT 514 (842)
++||.||+++-+..+++.+... ++.+..++|.. .......+..+..+|||||
T Consensus 412 ~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaT 463 (673)
T 2wv9_A 412 KTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITT 463 (673)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSSS-HHHHGGGGGTCCCSEEEEC
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChHH-HHHHHHHHHCCCceEEEEC
Confidence 5899999999999888877664 56788888842 2334556666778999999
No 217
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=42.82 E-value=9.6 Score=36.75 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=13.2
Q ss_pred cceEEeeccCCCcee
Q 003178 417 KDAVVKAKTGTGKSI 431 (842)
Q Consensus 417 ~dvii~A~TGSGKTl 431 (842)
+-+++.||+|+|||.
T Consensus 2 ~ii~l~GpsGaGKsT 16 (186)
T 3a00_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEESSSSSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 457799999999999
No 218
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=42.82 E-value=24 Score=37.61 Aligned_cols=71 Identities=7% Similarity=0.061 Sum_probs=49.5
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccc------ccCCCCCC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS------ARGMDYPD 699 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~------arGlDip~ 699 (842)
...++||.+|++.-+..++..+... ++.+..++|+.+..+....+. ...|+|+|.-. ...+.+..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 4569999999999999999888775 456777788876554433322 46799999421 23455667
Q ss_pred cceeEE
Q 003178 700 VTSVVQ 705 (842)
Q Consensus 700 V~~VI~ 705 (842)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 787774
No 219
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=42.79 E-value=9.7 Score=37.14 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=15.6
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.++.+++.|++|||||..
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 466789999999999994
No 220
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=42.57 E-value=17 Score=45.82 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=31.8
Q ss_pred EEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhh
Q 003178 420 VVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (842)
Q Consensus 420 ii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~ 479 (842)
+|.|..|||||.+ ++--+.+++..... +-.+|+|||.. +..++..++...+
T Consensus 5 lV~agAGSGKT~~-l~~ri~~ll~~~~~-------~~~il~lVP~q-~TFt~~~rl~~~l 55 (1166)
T 3u4q_B 5 FLVGRSGSGKTKL-IINSIQDELRRAPF-------GKPIIFLVPDQ-MTFLMEYELAKTP 55 (1166)
T ss_dssp EEEECTTSSHHHH-HHHHHHHHHHHCTT-------SSCEEEECCGG-GHHHHHHHHTCCS
T ss_pred EEEeCCCCChHHH-HHHHHHHHHHhCCC-------CCcEEEEecCc-ccHHHHHHHHHhh
Confidence 6889999999997 44444444443221 12589999976 4444555555544
No 221
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=42.44 E-value=19 Score=40.54 Aligned_cols=71 Identities=11% Similarity=0.072 Sum_probs=50.5
Q ss_pred CceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-c----ccC-C-CCCC
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-S----ARG-M-DYPD 699 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-~----arG-l-Dip~ 699 (842)
+.++||.+|++.-+...+..+... ++.+..+||+.+...+...+ . ....|+|+|.- + ..+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHI---I-EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHH---H-HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHH---h-cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999998888888776 77888999998665543222 1 24779999852 1 122 3 5667
Q ss_pred cceeEE
Q 003178 700 VTSVVQ 705 (842)
Q Consensus 700 V~~VI~ 705 (842)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787774
No 222
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=42.14 E-value=27 Score=37.51 Aligned_cols=72 Identities=10% Similarity=0.032 Sum_probs=48.9
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-----cc-cCCCCCC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----SA-RGMDYPD 699 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-----~a-rGlDip~ 699 (842)
.+.++||.+|++.-+..+++.++.. ++.+..++|+......... ..+...|+|+|.- +. ...++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 4558999999999999999888876 4556666776554322111 2356789999942 22 3466778
Q ss_pred cceeEE
Q 003178 700 VTSVVQ 705 (842)
Q Consensus 700 V~~VI~ 705 (842)
+++||.
T Consensus 164 ~~~vIi 169 (400)
T 1s2m_A 164 CSLFIM 169 (400)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 223
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=42.10 E-value=19 Score=42.56 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=50.8
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEe
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
++||.++|+.-|..+++.+... ++.+..++|+...... ...+..+..+|+||| +.+..+ +++.
T Consensus 441 ~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l~~G----lDip 506 (664)
T 1c4o_A 441 RTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLLREG----LDIP 506 (664)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCCCTT----CCCT
T ss_pred EEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----ChhhcC----ccCC
Confidence 7999999999999888877765 5677777776543221 122445668999999 233333 4456
Q ss_pred cceeeeeccccc
Q 003178 534 GLKMLVLDEADH 545 (842)
Q Consensus 534 ~l~~lVlDEAh~ 545 (842)
.+++||+=+++.
T Consensus 507 ~v~lVI~~d~d~ 518 (664)
T 1c4o_A 507 EVSLVAILDADK 518 (664)
T ss_dssp TEEEEEETTTTS
T ss_pred CCCEEEEeCCcc
Confidence 778777766654
No 224
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=42.06 E-value=16 Score=39.56 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=48.5
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEe
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
++||.++++.-+..+++.+... ++.+..++|+...... ...+..+..+|+|||. .+..+ +++.
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G----idip 343 (417)
T 2i4i_A 278 LTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LDIS 343 (417)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHTT----SCCC
T ss_pred eEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcC----CCcc
Confidence 6999999999999988887764 5678888887654322 2333445689999994 34333 3455
Q ss_pred cceeeee
Q 003178 534 GLKMLVL 540 (842)
Q Consensus 534 ~l~~lVl 540 (842)
++++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 6776664
No 225
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=42.02 E-value=19 Score=38.35 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=50.2
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEe
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
++||.++++.-|..+++.+... ++.+..++|+...... ...+..+..+|+|+|. .+..+ +++.
T Consensus 245 ~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idip 310 (395)
T 3pey_A 245 SSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLARG----IDIP 310 (395)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSSS----CCCT
T ss_pred CEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhcC----CCcc
Confidence 6999999999999988888765 5677888887654322 2334456689999993 33333 4556
Q ss_pred cceeeeecc
Q 003178 534 GLKMLVLDE 542 (842)
Q Consensus 534 ~l~~lVlDE 542 (842)
++++||.-.
T Consensus 311 ~~~~Vi~~~ 319 (395)
T 3pey_A 311 TVSMVVNYD 319 (395)
T ss_dssp TEEEEEESS
T ss_pred cCCEEEEcC
Confidence 778777643
No 226
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=41.84 E-value=7.7 Score=37.24 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=16.1
Q ss_pred hhcCcceEEeeccCCCcee
Q 003178 413 CLEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 413 il~g~dvii~A~TGSGKTl 431 (842)
+..|.-+++.|+.|||||+
T Consensus 6 i~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKST 24 (191)
T ss_dssp CCTTEEEEEEECTTSCHHH
T ss_pred CCCCeEEEEECCCCCCHHH
Confidence 3457778999999999999
No 227
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=41.66 E-value=11 Score=41.13 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=27.8
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhH
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReL 467 (842)
..+.+++|.|+||+|||... --++..+... +.+++|+=|..+.
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~-~~~~~~~~~~----------~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTA-KMLLLREYMQ----------GSRVIIIDPEREY 75 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHH-HHHHHHHHTT----------TCCEEEEESSCCS
T ss_pred cccCceEEEcCCCCCHHHHH-HHHHHHHHHC----------CCEEEEEeCCcCH
Confidence 35778999999999999852 2233222221 1247788887664
No 228
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=41.48 E-value=9.5 Score=38.94 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=16.2
Q ss_pred hcCcceEEeeccCCCceee
Q 003178 414 LEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTla 432 (842)
..+..+++.|++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3467899999999999983
No 229
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=41.38 E-value=5.2 Score=41.70 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=24.9
Q ss_pred cccccccCCCchhHhhhcccceeeeeeh-hhhhhhhh--hcCcceEEeeccCCCcee
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRV-QEATLSAC--LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~i-Q~~aI~~i--l~g~dvii~A~TGSGKTl 431 (842)
..+|++++-.+.+.+.|...=. .|+ ...++..+ .-.+.+++.||.|+|||+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTt 59 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTL 59 (274)
T ss_dssp ------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHH
Confidence 4568888766666666654211 011 11122211 112349999999999999
No 230
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=41.06 E-value=9.1 Score=41.67 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=18.7
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 4556677775 56789999999986
No 231
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=40.99 E-value=17 Score=36.73 Aligned_cols=71 Identities=10% Similarity=0.039 Sum_probs=47.5
Q ss_pred CceEEEEecchhHHHHHHHHHHHHh----hhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccc------ccCCCCCCc
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREMK----MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS------ARGMDYPDV 700 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~~----~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~------arGlDip~V 700 (842)
..++||.+|++.-+..++..++... +.+..++|+.+....... . .....|+|+|.-. ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 3589999999999999999888763 445667777655433222 1 2457899999621 123566677
Q ss_pred ceeEE
Q 003178 701 TSVVQ 705 (842)
Q Consensus 701 ~~VI~ 705 (842)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77663
No 232
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=40.83 E-value=10 Score=37.07 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=16.3
Q ss_pred hhcCcceEEeeccCCCcee
Q 003178 413 CLEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 413 il~g~dvii~A~TGSGKTl 431 (842)
+..++-++++|++|||||.
T Consensus 9 ~~~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp CCCCCCEEEECCTTSCHHH
T ss_pred cccCCEEEEECCCCCCHHH
Confidence 3457788999999999999
No 233
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=40.51 E-value=9.8 Score=36.90 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.6
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+++.|++|||||+
T Consensus 4 ~~g~~i~l~G~~GsGKST 21 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGT 21 (207)
T ss_dssp CCCCEEEEECSTTSCHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 356778899999999999
No 234
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=40.34 E-value=22 Score=39.65 Aligned_cols=53 Identities=17% Similarity=0.126 Sum_probs=40.4
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCc
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATP 515 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTP 515 (842)
++||.+||+.-|.++++.+... ++.+..+.|.... .....+..+..+|+|||.
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT~ 242 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTD 242 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTHH-HHGGGGGSSCCSEEEECG
T ss_pred CEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHHH-HHHHhhccCCceEEEECC
Confidence 4899999999999988887664 5667777776552 345566667789999993
No 235
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=40.18 E-value=11 Score=37.13 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=15.7
Q ss_pred hhhcCcceEEeeccCCCcee
Q 003178 412 ACLEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 412 ~il~g~dvii~A~TGSGKTl 431 (842)
.+..|.-+.+.||+|+|||.
T Consensus 16 ~i~~Gei~~l~GpnGsGKST 35 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKST 35 (207)
T ss_dssp ---CCCEEEEECSTTSSHHH
T ss_pred CCCCCCEEEEECCCCCCHHH
Confidence 45668888999999999999
No 236
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=39.78 E-value=8.1 Score=39.93 Aligned_cols=51 Identities=12% Similarity=0.139 Sum_probs=29.0
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhhhhhhh--hcCcceEEeeccCCCcee
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSAC--LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~i--l~g~dvii~A~TGSGKTl 431 (842)
..+|+++.-.+.+.+.+...-.. +. ...++..+ .-.+.+++.+|+|+|||+
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~-~~--~~~~l~~~~~~~~~gvll~Gp~GtGKTt 88 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEF-LK--NPSRFHEMGARIPKGVLLVGPPGVGKTH 88 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHH-HH--CHHHHHHTTCCCCCEEEEECCTTSSHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHH-HH--CHHHHHHcCCCCCCeEEEECCCcChHHH
Confidence 45688877666666666543211 00 01122211 012348999999999998
No 237
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=39.32 E-value=10 Score=36.15 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=16.1
Q ss_pred ceEEeeccCCCceeeehhHHHHHH
Q 003178 418 DAVVKAKTGTGKSIAFLLPAIEAV 441 (842)
Q Consensus 418 dvii~A~TGSGKTlafllPil~~l 441 (842)
-.+|.+++|+|||. ++-++..+
T Consensus 28 ~~~i~G~NGsGKSt--ll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSN--IGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHH--HHHHHHHH
T ss_pred cEEEECCCCCCHHH--HHHHHHHH
Confidence 56799999999999 44444433
No 238
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=39.23 E-value=7.3 Score=36.94 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.5
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
++-++++|+.|||||.+
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45688999999999993
No 239
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=39.13 E-value=11 Score=37.77 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=15.5
Q ss_pred hhcCcceEEeeccCCCcee
Q 003178 413 CLEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 413 il~g~dvii~A~TGSGKTl 431 (842)
+..|.-+++.||.|+|||.
T Consensus 13 ~~~G~ii~l~GpsGsGKST 31 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSS 31 (219)
T ss_dssp --CCCEEEEECCTTSCHHH
T ss_pred CCCCcEEEEECCCCCCHHH
Confidence 4457788999999999999
No 240
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=39.00 E-value=11 Score=37.72 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=11.5
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||+|||||.
T Consensus 25 ~~G~ii~l~Gp~GsGKST 42 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTT 42 (231)
T ss_dssp ECCCEEEEECSCC----C
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 346778899999999999
No 241
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=38.79 E-value=11 Score=35.45 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=14.3
Q ss_pred CcceEEeeccCCCcee
Q 003178 416 GKDAVVKAKTGTGKSI 431 (842)
Q Consensus 416 g~dvii~A~TGSGKTl 431 (842)
+..+++.|+.|||||+
T Consensus 4 ~~~i~l~G~~GsGKST 19 (173)
T 1kag_A 4 KRNIFLVGPMGAGKST 19 (173)
T ss_dssp CCCEEEECCTTSCHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 4568899999999999
No 242
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=38.76 E-value=8.5 Score=40.77 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=17.6
Q ss_pred hhhcCcceEEeeccCCCceee
Q 003178 412 ACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 412 ~il~g~dvii~A~TGSGKTla 432 (842)
.+..+.++++.||+|+|||..
T Consensus 42 ~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHH
Confidence 344578999999999999983
No 243
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=38.73 E-value=18 Score=39.91 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=48.5
Q ss_pred EEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeec---cccccCCCceEEecCccchhhhccccCCceEEEec
Q 003178 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (842)
Q Consensus 458 ~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~ 534 (842)
+||.|+|+.-|..+++.+... ++.+..++|+...... ...+..+...|+|||. .+..+ +++.+
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~rG----lDi~~ 368 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASRG----LDIKN 368 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTSS----CCCTT
T ss_pred EEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhCC----CCccc
Confidence 899999999999988887764 6678888888654322 2344556689999994 34333 45566
Q ss_pred ceeeee
Q 003178 535 LKMLVL 540 (842)
Q Consensus 535 l~~lVl 540 (842)
+++||.
T Consensus 369 v~~VI~ 374 (434)
T 2db3_A 369 IKHVIN 374 (434)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777664
No 244
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=38.29 E-value=32 Score=37.06 Aligned_cols=72 Identities=7% Similarity=0.028 Sum_probs=48.8
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHh----hhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc-----ccc-cCCCCCC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMK----MNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-----VSA-RGMDYPD 699 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~----~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd-----v~a-rGlDip~ 699 (842)
...++||.+|++.-+..+++.+...+ +.+..++|+.........+ . ....|+|+|. .+. ..++...
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL---D-YGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHH---H-HCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHh---h-cCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 45699999999999999999888764 4455666766544333222 2 3457999994 232 3466777
Q ss_pred cceeEE
Q 003178 700 VTSVVQ 705 (842)
Q Consensus 700 V~~VI~ 705 (842)
+++||.
T Consensus 180 ~~~vVi 185 (410)
T 2j0s_A 180 IKMLVL 185 (410)
T ss_dssp CCEEEE
T ss_pred eeEEEE
Confidence 888774
No 245
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.12 E-value=8.9 Score=42.88 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=28.2
Q ss_pred ccccccCCCchhHhhhccc---ceeeeeehhhhhhhhhhcCcceEEeeccCCCceee
Q 003178 379 KRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~---g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTla 432 (842)
.+|++.+=-+..++.|.+. -+..|--++...+ --.+.+++.||.|+|||+.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHH
Confidence 4577776555555555432 1111111111111 1247899999999999993
No 246
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=38.03 E-value=12 Score=34.87 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=16.5
Q ss_pred ceEEeeccCCCceeeehhHHHHHHH
Q 003178 418 DAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 418 dvii~A~TGSGKTlafllPil~~l~ 442 (842)
-.+|.+|+|+|||. ++-++..++
T Consensus 25 ~~~I~G~NGsGKSt--il~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSS--LLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHH--HHHHHHHHH
T ss_pred eEEEECCCCCCHHH--HHHHHHHHH
Confidence 46789999999999 344444433
No 247
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=38.02 E-value=8.5 Score=41.17 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=13.5
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
+-++|.||||||||..
T Consensus 4 ~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCcCCHHHH
Confidence 4478999999999984
No 248
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=37.90 E-value=8.5 Score=41.51 Aligned_cols=16 Identities=50% Similarity=0.457 Sum_probs=13.9
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
+-++|+||||||||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4688999999999984
No 249
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=37.64 E-value=13 Score=39.59 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=20.9
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHHH
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l~ 442 (842)
-.|.-+.|.||+|||||. ++-+|..++
T Consensus 124 ~~Ge~vaIvGpsGsGKST--Ll~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSM--LCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHH--HHHHHhhhc
Confidence 357888899999999999 555555555
No 250
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=37.56 E-value=13 Score=35.29 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.6
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+.-+++.|+.|||||+.
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999993
No 251
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=37.54 E-value=13 Score=35.43 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=14.7
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
.+.+++.|++|||||..
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45789999999999994
No 252
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.50 E-value=9.6 Score=42.89 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=31.6
Q ss_pred cccccccCCCchhHhhhcccc---eeeeeehhhhhhhhhhcCcceEEeeccCCCceee
Q 003178 378 QKRFDECGISPLTIKALTAAG---YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g---~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTla 432 (842)
..+|++.+=-+.+++.|.+.= +..+--++... +--.+.+++.||.|+|||+.
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 357999877777777775421 11111111111 12257899999999999983
No 253
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=37.46 E-value=11 Score=40.50 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=18.4
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|+||||||.+
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceE
Confidence 3455667775 56789999999996
No 254
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.23 E-value=12 Score=41.43 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=30.7
Q ss_pred cccccccCCCchhHhhhccc---ceeeeeehhhhhhhhhhcCcceEEeeccCCCceee
Q 003178 378 QKRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~---g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTla 432 (842)
..+|++.+=-+..++.|.+. -+..|--++...+ --.+.+++.||.|+|||+.
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHH
Confidence 35688887556666666532 1112222222221 1247899999999999993
No 255
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=36.97 E-value=10 Score=43.21 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.5
Q ss_pred hhhhhhcCcceEEeeccCCCcee
Q 003178 409 TLSACLEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 409 aI~~il~g~dvii~A~TGSGKTl 431 (842)
++..+..+.++++.||+|+|||.
T Consensus 34 l~~al~~~~~VLL~GpPGtGKT~ 56 (500)
T 3nbx_X 34 CLLAALSGESVFLLGPPGIAKSL 56 (500)
T ss_dssp HHHHHHHTCEEEEECCSSSSHHH
T ss_pred HHHHHhcCCeeEeecCchHHHHH
Confidence 44456678999999999999998
No 256
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=36.48 E-value=30 Score=41.51 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=42.4
Q ss_pred EEEEeccchhHHHHHHHHHHHhhh------cCCceeEEEEecceeeeecc---cccc-----CCCceEEecCc
Q 003178 457 YVLILCPTRELASQIAAEAIALLK------NHDGIGVLTLVGGTRFKVDQ---RRLE-----SDPCQILVATP 515 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~------~~~~i~v~~l~Gg~~~~~~~---~~l~-----~~~~~IIVaTP 515 (842)
.+||.+|++.-+..+++.+...+. ...++.+..++|+....... ..+. .+...|||||.
T Consensus 305 ~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~ 377 (773)
T 2xau_A 305 DILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN 377 (773)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc
Confidence 699999999999999888876332 22477888899987654332 2233 45679999994
No 257
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=36.38 E-value=12 Score=40.93 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=18.2
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 3455677765 56789999999986
No 258
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=36.22 E-value=14 Score=35.95 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=15.0
Q ss_pred cCcceEEeeccCCCcee
Q 003178 415 EGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTl 431 (842)
.|.-+++.|+.|||||.
T Consensus 28 ~g~~i~l~G~~GsGKST 44 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTT 44 (200)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 36678899999999999
No 259
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=36.01 E-value=39 Score=35.39 Aligned_cols=71 Identities=10% Similarity=0.174 Sum_probs=47.7
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccc------ccCCCCCC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS------ARGMDYPD 699 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~------arGlDip~ 699 (842)
.+.++||.+|++.-+..+++.+... ++.+..++|+......... +. ...|+|+|.-. ...+++..
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~--~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA---LK--NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHH---HH--TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhh---cC--CCCEEEecHHHHHHHHHcCCccccc
Confidence 4668999999999999999988875 3455666666554332222 22 57899999521 12356777
Q ss_pred cceeEE
Q 003178 700 VTSVVQ 705 (842)
Q Consensus 700 V~~VI~ 705 (842)
+++||.
T Consensus 148 ~~~iIi 153 (367)
T 1hv8_A 148 VKYFIL 153 (367)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 260
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=36.00 E-value=7.7 Score=39.62 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=27.6
Q ss_pred ccccccCCCchhHhhhcccceeeeeehhhhhhhh--hhcCcceEEeeccCCCceee
Q 003178 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSA--CLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~--il~g~dvii~A~TGSGKTla 432 (842)
..|+++.-.+..++.|...-- .+. ..+.+.. +...+.+++.||+|+|||..
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~-~~~--~~~~~~~~~~~~~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVD-FLK--YPERYANLGAKIPKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHH-HHH--CHHHHHHHSCCCCSCCCCBCSSCSSHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHH-HHH--ChHHHHHCCCCCCceEEEECCCCCcHHHH
Confidence 457777555566665553210 000 0011111 11245689999999999994
No 261
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=35.96 E-value=15 Score=35.96 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=17.0
Q ss_pred CcceEEeeccCCCceeeehhHHHHHH
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAV 441 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l 441 (842)
+.-+.+.|++|||||+ ++-++..+
T Consensus 6 ~~~i~i~G~~GsGKST--l~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTT--LAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHH--HHHHHHHH
T ss_pred cEEEEEECCCCCCHHH--HHHHHHHH
Confidence 4456799999999999 44444443
No 262
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=35.92 E-value=11 Score=40.87 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=18.1
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|+||||||.+
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeE
Confidence 3455667765 46789999999996
No 263
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=35.61 E-value=25 Score=39.57 Aligned_cols=71 Identities=11% Similarity=0.042 Sum_probs=47.9
Q ss_pred CceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecccc-----ccC-C-CCCC
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS-----ARG-M-DYPD 699 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~-----arG-l-Dip~ 699 (842)
..++||.+|++.-+...+..++.. ++.+..+||+.+...+...+ . ....|+|||.-. ..+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKV---I-EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHH---H-HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHh---h-CCCCEEEECHHHHHHHHHhCccccccc
Confidence 668999999999999998888876 67888899988655443222 1 246799998522 222 4 6777
Q ss_pred cceeEE
Q 003178 700 VTSVVQ 705 (842)
Q Consensus 700 V~~VI~ 705 (842)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888774
No 264
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=35.57 E-value=25 Score=38.33 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=51.7
Q ss_pred CCceEEEEecchhHHHHHHHHHHHH-hh---hHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-cc-----cCCCCCC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREM-KM---NVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-SA-----RGMDYPD 699 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~-~~---~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-~a-----rGlDip~ 699 (842)
...++||.||++.-+...+..+.+. +. .+..+||+....++.... ....|+|+|.- +. ..+....
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~-----~~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW-----ARAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHH-----HHCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhc-----cCCCEEEecHHHHHHHHhcCCcchhh
Confidence 4568999999999999999988876 44 778889988776554332 24679999852 22 2466777
Q ss_pred cceeEE
Q 003178 700 VTSVVQ 705 (842)
Q Consensus 700 V~~VI~ 705 (842)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 888774
No 265
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=35.55 E-value=13 Score=40.31 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=19.2
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFT 101 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEe
Confidence 5667778876 46789999999986
No 266
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=35.52 E-value=12 Score=40.81 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=18.2
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceE
Confidence 3445667765 56789999999996
No 267
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=35.45 E-value=12 Score=40.57 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=19.5
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyT 102 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYT 102 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceE
Confidence 6677788876 46789999999996
No 268
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=35.44 E-value=12 Score=40.46 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=15.7
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
....+++.||+|+|||++
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 456899999999999994
No 269
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=35.42 E-value=23 Score=34.29 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=33.6
Q ss_pred CCceEEEEecchhHHHH-HHHHHHHH---hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc
Q 003178 630 PDYKVIVFCSTGMVTSL-LYLLLREM---KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 689 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~-l~~~L~~~---~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd 689 (842)
...++||+|++..-+.. +.+.+... ++.+..++|+.....+...+ . ....|+|+|.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~i~v~T~ 140 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEV---V-KSCDIIISTA 140 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHH---H-HHCSEEEEEH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhh---c-cCCCEEEECH
Confidence 35689999999988877 66666654 34566667665443322111 1 2467888885
No 270
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=35.42 E-value=12 Score=40.58 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=17.7
Q ss_pred hhhhhcCcc--eEEeeccCCCceee
Q 003178 410 LSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 410 I~~il~g~d--vii~A~TGSGKTla 432 (842)
+..++.|.+ ++..|.||||||.+
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceE
Confidence 445667765 56789999999986
No 271
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=35.39 E-value=10 Score=40.50 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=13.0
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
-++|+||||||||..
T Consensus 12 ~i~i~GptgsGKt~l 26 (316)
T 3foz_A 12 AIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 468999999999984
No 272
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=35.38 E-value=46 Score=35.73 Aligned_cols=73 Identities=8% Similarity=0.072 Sum_probs=48.9
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHh----hhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc-----ccc-cCCCCCC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMK----MNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-----VSA-RGMDYPD 699 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~----~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd-----v~a-rGlDip~ 699 (842)
...++||.+|++.-+..++..++..+ ..+..++|+.. ..........+...|+|+|. .+. ..+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTN---VRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTT---HHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcc---hHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 45689999999999999999988763 33344444433 33334555567789999994 222 3356667
Q ss_pred cceeEE
Q 003178 700 VTSVVQ 705 (842)
Q Consensus 700 V~~VI~ 705 (842)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777763
No 273
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=35.34 E-value=8.6 Score=40.63 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=16.2
Q ss_pred hcCcceEEeeccCCCceee
Q 003178 414 LEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTla 432 (842)
.....+++.|++|+|||++
T Consensus 23 ~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp STTSCEEEESCTTSCHHHH
T ss_pred CCCCcEEEECCCCchHHHH
Confidence 3467899999999999983
No 274
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=35.34 E-value=7 Score=41.65 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=29.7
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhhh-hhh-hhhcCcceEEeeccCCCceee
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEA-TLS-ACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~~-aI~-~il~g~dvii~A~TGSGKTla 432 (842)
..+|++++-.+.+++.|...=. .|.+.. .+. .....+.+++.||+|+|||+.
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHHCGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHhCHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 3568888766677776654210 000000 000 011236799999999999983
No 275
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=35.24 E-value=12 Score=40.50 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=18.1
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEE
Confidence 3445667765 56789999999986
No 276
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=35.21 E-value=13 Score=40.47 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=18.4
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|+||||||.+
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 4556677776 46779999999986
No 277
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=35.20 E-value=14 Score=34.76 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.7
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+..+++.|+.|||||+.
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 56788999999999993
No 278
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=35.14 E-value=13 Score=40.31 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=18.3
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|+||||||.+
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeE
Confidence 3455667765 56789999999986
No 279
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=35.13 E-value=15 Score=37.93 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.5
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
....+++.||+|+|||..
T Consensus 49 ~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 356899999999999984
No 280
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.10 E-value=11 Score=42.05 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=28.3
Q ss_pred ccccccCCCchhHhhhccc---ceeeeeehhhhhhhhhhcCcceEEeeccCCCceee
Q 003178 379 KRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 379 ~~F~~l~l~~~l~~~L~~~---g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTla 432 (842)
.+|++.+=-..+.+.|.+. -+..+--++...+ --.+.+++.||.|+|||+.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHH
Confidence 5677776555555555432 1111111111111 1246799999999999993
No 281
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=35.09 E-value=9.5 Score=35.50 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=12.9
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
-++++|++|||||..
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367999999999993
No 282
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=35.09 E-value=13 Score=40.38 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=18.6
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceE
Confidence 4556677776 46789999999996
No 283
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=34.96 E-value=13 Score=40.48 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=18.4
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|+||||||.+
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 4455677775 56789999999996
No 284
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=34.94 E-value=9.6 Score=39.05 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=12.9
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
-++|+|+||||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 368999999999983
No 285
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=34.81 E-value=12 Score=40.63 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=18.2
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 3455667765 56789999999986
No 286
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=34.78 E-value=17 Score=35.58 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=25.2
Q ss_pred Eecceeeeecccccc--cccccccchhhhhhcccccccceeecccCc
Q 003178 532 LMGLKMLVLDEADHL--LDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (842)
Q Consensus 532 L~~l~~lVlDEAh~l--ld~gf~~~i~~Il~~l~~~~q~il~SATl~ 576 (842)
+.+.+++||||+..+ .+..|...+..++.. ...+|+-++|++
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecC
Confidence 456789999998877 344455555555542 223443366654
No 287
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=34.73 E-value=12 Score=40.35 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=18.2
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|+||||||.+
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEe
Confidence 3455667775 46788999999986
No 288
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=34.70 E-value=12 Score=40.09 Aligned_cols=24 Identities=25% Similarity=0.636 Sum_probs=19.0
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|+||||||.+
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 5566778876 56789999999986
No 289
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=34.69 E-value=12 Score=41.35 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=18.0
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeE
Confidence 3445667765 56789999999986
No 290
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=34.63 E-value=14 Score=37.38 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.5
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
.+.+++.||+|+|||+.
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 34689999999999983
No 291
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=34.21 E-value=15 Score=35.42 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=16.7
Q ss_pred ceEEeeccCCCceeeehhHHHHHHH
Q 003178 418 DAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 418 dvii~A~TGSGKTlafllPil~~l~ 442 (842)
.+.+.||.|+|||+ ++-++..++
T Consensus 2 ~i~l~G~nGsGKTT--Ll~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTT--LVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHH--HHHHHHHHH
T ss_pred EEEEECCCCCCHHH--HHHHHHHHh
Confidence 46789999999999 444444444
No 292
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=33.97 E-value=13 Score=40.51 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=18.1
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 3455667765 56789999999986
No 293
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=33.92 E-value=12 Score=40.85 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=18.8
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 5566777875 46789999999986
No 294
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=33.83 E-value=13 Score=40.83 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=18.1
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHH
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeE
Confidence 3445667775 56789999999986
No 295
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=33.83 E-value=38 Score=38.87 Aligned_cols=72 Identities=7% Similarity=0.033 Sum_probs=47.9
Q ss_pred CceEEEEecchhHHHHHHHHHHHHh-----hh---HHHHhhcCcchhhhhhhHHHhhcceEEEEecccc-----cc--CC
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREMK-----MN---VREMYSRKPQLYRDRISEEFRASKRLILVTSDVS-----AR--GM 695 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~~-----~~---v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~-----ar--Gl 695 (842)
..++||.+||+.-+..++..+.... +. +..++|+ ......+..+..+...|||||.-. .+ ..
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg---~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~ 171 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGG---TDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNK 171 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTT---SCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHH
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECC---ccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccc
Confidence 4589999999999999999888752 22 2233343 334455566667788999999521 11 33
Q ss_pred CCCCcceeEE
Q 003178 696 DYPDVTSVVQ 705 (842)
Q Consensus 696 Dip~V~~VI~ 705 (842)
.+..+++||.
T Consensus 172 ~~~~~~~lVi 181 (579)
T 3sqw_A 172 FFRFVDYKVL 181 (579)
T ss_dssp HCTTCCEEEE
T ss_pred ccccCCEEEE
Confidence 5667777763
No 296
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=33.57 E-value=20 Score=40.88 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=16.2
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.+.+++|.|.||||||.+
T Consensus 166 ~~pHlLIaG~TGSGKSt~ 183 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG 183 (512)
T ss_dssp GSCSEEEECCTTSSHHHH
T ss_pred cCceEEEECCCCCCHHHH
Confidence 467899999999999995
No 297
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=33.45 E-value=9.5 Score=36.38 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=15.4
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.|.-+.++|++|||||+.
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 466788999999999993
No 298
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.38 E-value=12 Score=41.26 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=18.9
Q ss_pred hhhhhhcCcce--EEeeccCCCceee
Q 003178 409 TLSACLEGKDA--VVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~dv--ii~A~TGSGKTla 432 (842)
.+..++.|.++ +..|.||||||.+
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyT 157 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFT 157 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceE
Confidence 45666778764 6788999999996
No 299
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=33.37 E-value=13 Score=37.79 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.8
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
-.|.-+.+.||+|||||+
T Consensus 29 ~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 357788899999999998
No 300
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=33.34 E-value=19 Score=36.93 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=17.6
Q ss_pred hhhcCcceEEeeccCCCceee
Q 003178 412 ACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 412 ~il~g~dvii~A~TGSGKTla 432 (842)
..+.|..+++.|+.|||||.+
T Consensus 44 ~~l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 44 PYLNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HHHTTCCEEEECSTTSCHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHH
Confidence 334588999999999999994
No 301
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=33.15 E-value=12 Score=37.22 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.3
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.++-+++.+|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 467789999999999873
No 302
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=33.15 E-value=16 Score=35.57 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=18.5
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHH
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~ 442 (842)
.|.-+++.|+.|||||.. .-++...+
T Consensus 24 ~g~~i~l~G~sGsGKSTl--~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL--ACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHH--HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH--HHHHHHHH
Confidence 466788999999999983 34444333
No 303
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=32.91 E-value=15 Score=38.12 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=15.2
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
.+.+++.||+|+|||+.
T Consensus 54 ~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 57899999999999993
No 304
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=32.84 E-value=30 Score=41.56 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=47.9
Q ss_pred CceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-----cccC-C-CCCC
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----SARG-M-DYPD 699 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-----~arG-l-Dip~ 699 (842)
+.++||.||++.-+...+..++.. ++.+..+||+.+...+...+ .+...|+|||.- +..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKV----IEDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHH----HHTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHh----hCCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999999988888876 77888999998655443222 135789999942 1222 3 5667
Q ss_pred cceeEE
Q 003178 700 VTSVVQ 705 (842)
Q Consensus 700 V~~VI~ 705 (842)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788773
No 305
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=32.78 E-value=15 Score=40.64 Aligned_cols=15 Identities=40% Similarity=0.468 Sum_probs=12.9
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
-++|.||||||||..
T Consensus 4 ~i~i~GptgsGKttl 18 (409)
T 3eph_A 4 VIVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEEECSSSSHHHH
T ss_pred EEEEECcchhhHHHH
Confidence 367999999999984
No 306
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=32.76 E-value=13 Score=40.65 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=18.0
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 3445667765 56789999999986
No 307
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=32.58 E-value=14 Score=39.78 Aligned_cols=51 Identities=16% Similarity=0.064 Sum_probs=28.7
Q ss_pred cccccccCCCchhHhhhcccce---eeeeehhhhhhhhhhcCcceEEeeccCCCceee
Q 003178 378 QKRFDECGISPLTIKALTAAGY---IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~---~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTla 432 (842)
...|+++.-...+++.|...=. ..+..++. .....+.+++.||+|+|||+.
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~----~~~~~~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG----NRKPTSGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS----SCCCCCCEEEECSTTSCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc----CCCCCceEEEECCCCCcHHHH
Confidence 3568887666666666653210 00000000 112245799999999999994
No 308
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=32.54 E-value=17 Score=38.79 Aligned_cols=17 Identities=29% Similarity=0.677 Sum_probs=15.0
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
++.+++.||+|+|||..
T Consensus 70 ~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp TCEEEEEESTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 46799999999999994
No 309
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=32.46 E-value=13 Score=41.19 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=18.8
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeE
Confidence 4566677876 46778999999996
No 310
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=32.39 E-value=17 Score=39.44 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=16.9
Q ss_pred CcceEEeeccCCCceeeehhHHHHH
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEA 440 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~ 440 (842)
..-.+|.|+||+|||. ++=++..
T Consensus 25 ~gl~vi~G~NGaGKT~--ileAI~~ 47 (371)
T 3auy_A 25 KGIVAIIGENGSGKSS--IFEAVFF 47 (371)
T ss_dssp SEEEEEEECTTSSHHH--HHHHHHH
T ss_pred CCeEEEECCCCCCHHH--HHHHHHH
Confidence 3456799999999999 4445544
No 311
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=32.37 E-value=22 Score=39.46 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=40.1
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCc
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATP 515 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTP 515 (842)
++||.+|++.-|..+++.+.+. ++.+..++|+.. ......+..+..+|+|||.
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~r-~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKTF-ESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTTH-HHHTTHHHHSCCSEEEECG
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCccH-HHHHHhhcCCCCeEEEECc
Confidence 5899999999999998888775 567888887632 2234455566789999993
No 312
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=32.30 E-value=13 Score=40.73 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=18.3
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyT 151 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHT 151 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeE
Confidence 3455667765 56789999999986
No 313
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=32.26 E-value=17 Score=36.63 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.8
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
.+.+++.||+|+|||..
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46789999999999984
No 314
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=32.25 E-value=18 Score=33.75 Aligned_cols=15 Identities=13% Similarity=-0.033 Sum_probs=13.0
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
-+++.|+.|||||++
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 368999999999993
No 315
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=32.20 E-value=36 Score=34.90 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=17.8
Q ss_pred hhhcCcceEEeeccCCCceee
Q 003178 412 ACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 412 ~il~g~dvii~A~TGSGKTla 432 (842)
-+..|.-++|.|++|+|||+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl 46 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSML 46 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHH
Confidence 345688899999999999984
No 316
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=32.05 E-value=11 Score=36.19 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=15.4
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.+..++++|+.|||||.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356789999999999994
No 317
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=31.95 E-value=15 Score=40.30 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=19.1
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 5667778876 56788999999986
No 318
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=31.94 E-value=17 Score=31.85 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=32.0
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCc
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKP 666 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~ 666 (842)
...+++|||.+-..+...+..|+..|+++..+.|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4568999999999999999999999988888888864
No 319
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=31.86 E-value=44 Score=37.20 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=40.1
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCc
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATP 515 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTP 515 (842)
++||.+|++.-|..+++.+... ++.+..+.|... ......+..+..+|||||.
T Consensus 192 ~~LVF~~s~~~~~~l~~~L~~~-----g~~v~~lh~~~R-~~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 192 KTVWFVASVKMGNEIAMCLQRA-----GKKVIQLNRKSY-DTEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEEESTTCC-CCCGGGSSSCCCSEEEESS
T ss_pred CEEEEeCChHHHHHHHHHHHhc-----CCcEEecCHHHH-HHHHhhccCCCceEEEECC
Confidence 5899999999999998888775 567777777533 3344556667789999993
No 320
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=31.74 E-value=43 Score=38.02 Aligned_cols=72 Identities=7% Similarity=0.026 Sum_probs=47.5
Q ss_pred CceEEEEecchhHHHHHHHHHHHH-----hhh---HHHHhhcCcchhhhhhhHHHhhcceEEEEeccccc-----c--CC
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREM-----KMN---VREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA-----R--GM 695 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~-----~~~---v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv~a-----r--Gl 695 (842)
..++||.+|++.-+..++..++.. ++. +..++|+. .....+..+..+...|+|||.-.- + ..
T Consensus 146 ~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 222 (563)
T 3i5x_A 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT---DFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNK 222 (563)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTS---CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHH
T ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCc---CHHHHHHHHhcCCCCEEEECcHHHHHHHHhcccc
Confidence 348999999999999999998874 222 23334443 344455666677889999996321 1 23
Q ss_pred CCCCcceeEE
Q 003178 696 DYPDVTSVVQ 705 (842)
Q Consensus 696 Dip~V~~VI~ 705 (842)
.+..+++||.
T Consensus 223 ~~~~~~~lVi 232 (563)
T 3i5x_A 223 FFRFVDYKVL 232 (563)
T ss_dssp HCTTCCEEEE
T ss_pred ccccceEEEE
Confidence 4566777773
No 321
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=31.69 E-value=12 Score=48.66 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=53.4
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEeccee
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~ 495 (842)
|+-+.|.+|.|||||+. +++++....+... .++++.+--+|.... +.++ |+.
T Consensus 1431 g~~iei~g~~~sGkttl-~~~~~a~~~~~g~----------~~~~i~~e~~~~~~~---~~~~-----Gv~--------- 1482 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTL-TLQVIAAAQREGK----------TCAFIDAEHALDPIY---ARKL-----GVD--------- 1482 (1706)
T ss_dssp TSEEEEECSTTSSHHHH-HHHHHHHHHHTTC----------CEEEECTTSCCCHHH---HHHT-----TCC---------
T ss_pred CCEEEEEcCCCCCHHHH-HHHHHHHHHhcCC----------eEEEEecCCCCCHHH---HHHc-----CCC---------
Confidence 46788999999999996 5666654444321 477887766664433 3333 221
Q ss_pred eeeccccccCCCceEEecCccchhhhccccCCceEEEecceeeeecccccccc
Q 003178 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548 (842)
Q Consensus 496 ~~~~~~~l~~~~~~IIVaTPgrLl~~L~~~~~~~~~L~~l~~lVlDEAh~lld 548 (842)
. -+++|.-|..--++|.-... ...-..+++||||.+-.+..
T Consensus 1483 ~-----------~~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1483 I-----------DNLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp G-----------GGCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCC
T ss_pred H-----------HHeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCc
Confidence 0 13566666553333221100 01112578999999988764
No 322
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=31.64 E-value=21 Score=34.78 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=13.5
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
.+++.|++|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999984
No 323
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=31.34 E-value=23 Score=34.76 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=19.7
Q ss_pred ehhhhhhhhhhcCcceEEeeccCCCceee
Q 003178 404 RVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 404 ~iQ~~aI~~il~g~dvii~A~TGSGKTla 432 (842)
+.++.. ..+..+.-+++.|+.|||||..
T Consensus 14 ~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 14 RSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp HHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred HHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 344443 3345577788999999999993
No 324
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=31.25 E-value=26 Score=39.07 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=29.6
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHH
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~ 476 (842)
..|.-++|.|++|+|||.. ++-+..++...+ ..++|++-- .-..|+..++.
T Consensus 195 ~~G~liiIaG~pG~GKTtl-al~ia~~~a~~g----------~~vl~fSlE-ms~~ql~~R~~ 245 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAF-ALKQAKNMSDND----------DVVNLHSLE-MGKKENIKRLI 245 (444)
T ss_dssp CSSCEEEEEECSSSSHHHH-HHHHHHHHHHTT----------CEEEEECSS-SCTTHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHH-HHHHHHHHHHcC----------CEEEEEECC-CCHHHHHHHHH
Confidence 3466788999999999984 444444443321 146776542 23345544443
No 325
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.22 E-value=14 Score=41.13 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=30.2
Q ss_pred cccccccCCCchhHhhhccc---ceeeeeehhhhhhhhhhcCcceEEeeccCCCceee
Q 003178 378 QKRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~---g~~~~t~iQ~~aI~~il~g~dvii~A~TGSGKTla 432 (842)
..+|++.+=-+.+++.|.+. -+..+--++...+ --.+.+++.||.|+|||+.
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHH
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHH
Confidence 45788886555556655532 1111211222111 1246799999999999993
No 326
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=31.22 E-value=19 Score=38.01 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=19.6
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHh
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
+.-+.+.+|+|+|||+ ++-.+..++.
T Consensus 102 g~vi~lvG~nGsGKTT--ll~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTT--TIAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHH--HHHHHHHHHH
Confidence 5567799999999999 5555655554
No 327
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=30.90 E-value=18 Score=38.16 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=20.4
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHh
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
.|.-+.+.|++|+|||+ ++-.+..++.
T Consensus 99 ~g~vi~lvG~nGsGKTT--ll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTT--SLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHH--HHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHH--HHHHHHHHHH
Confidence 46677899999999999 5555555554
No 328
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=30.38 E-value=16 Score=40.90 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=18.3
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEE
Confidence 3455677765 56789999999986
No 329
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=30.28 E-value=22 Score=37.15 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=15.0
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
...+++.|++|+|||..
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 36899999999999983
No 330
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=30.14 E-value=32 Score=36.36 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=31.0
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHHHhhcccCcccccCceEEEEeccchhHHHHHHHHHHHh
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~LIL~PTReLA~Qi~~~l~~l 478 (842)
..|.-++|.|++|+|||.. ++-+...+.... ..++|++-- .-..|+..++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl-~l~ia~~~a~~g----------~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAF-ALKQAKNMSDND----------DVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHH-HHHHHHHHHTTT----------CEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHH-HHHHHHHHHHcC----------CeEEEEECC-CCHHHHHHHHHHH
Confidence 4467789999999999974 443433333211 146776643 3345555555443
No 331
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=30.07 E-value=32 Score=36.37 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=12.5
Q ss_pred ceEEeeccCCCcee
Q 003178 418 DAVVKAKTGTGKSI 431 (842)
Q Consensus 418 dvii~A~TGSGKTl 431 (842)
-++|.|+.|||||+
T Consensus 6 v~~i~G~~GaGKTT 19 (318)
T 1nij_A 6 VTLLTGFLGAGKTT 19 (318)
T ss_dssp EEEEEESSSSSCHH
T ss_pred EEEEEecCCCCHHH
Confidence 36799999999999
No 332
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=29.93 E-value=17 Score=30.74 Aligned_cols=35 Identities=11% Similarity=0.278 Sum_probs=30.3
Q ss_pred ceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCc
Q 003178 632 YKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKP 666 (842)
Q Consensus 632 ~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~ 666 (842)
.+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 68999999998899999999999988777777764
No 333
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=29.80 E-value=15 Score=36.07 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=15.5
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.|.-+.+.+|+|+|||+.
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467788999999999983
No 334
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=29.79 E-value=23 Score=44.12 Aligned_cols=74 Identities=11% Similarity=0.132 Sum_probs=55.5
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHh----h----hHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-cccCCC-CCC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMK----M----NVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-SARGMD-YPD 699 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~----~----~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-~arGlD-ip~ 699 (842)
.+.++||.+||+.-+..++..++... + .+..+||+.+...+....+.+.. ..|+|+|.- +..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 35689999999999999999988763 4 67889999998887777777666 899999962 211111 557
Q ss_pred cceeEE
Q 003178 700 VTSVVQ 705 (842)
Q Consensus 700 V~~VI~ 705 (842)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 335
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=29.67 E-value=20 Score=35.26 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=17.7
Q ss_pred cceEEeeccCCCceeeehhHHHHHHHh
Q 003178 417 KDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 417 ~dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
.-.+|.|++|+|||. ++-++..++.
T Consensus 24 ~~~~I~G~NgsGKSt--il~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSS--LLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHH--HHHHHHHHhc
Confidence 345789999999999 4455544443
No 336
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=29.50 E-value=26 Score=40.51 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=19.2
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHH
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~ 442 (842)
..+++|.|.||||||.+ +-.++..++
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 57899999999999996 333444443
No 337
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=29.48 E-value=16 Score=37.05 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=15.8
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||+|||||+
T Consensus 29 ~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 357788899999999999
No 338
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=29.45 E-value=18 Score=34.39 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=15.0
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.|..+++.|+.|||||+.
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355688999999999993
No 339
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=29.37 E-value=17 Score=34.51 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=19.4
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHHH
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l~ 442 (842)
..|.-+.+.+|.|+|||. ++-++..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 346667899999999999 455554443
No 340
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=29.31 E-value=21 Score=37.33 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=13.9
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
+.+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4678999999999993
No 341
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=29.11 E-value=35 Score=35.80 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.3
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.++.+++.+++|+|||+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl 121 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTT 121 (296)
T ss_dssp CSSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 466788999999999984
No 342
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.99 E-value=28 Score=36.69 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=21.8
Q ss_pred cceeeeecccccccccccccchhhhhhcccccccceee
Q 003178 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571 (842)
Q Consensus 534 ~l~~lVlDEAh~lld~gf~~~i~~Il~~l~~~~q~il~ 571 (842)
...+|||||+|.+.... ...+..++...+....+++.
T Consensus 133 ~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~ 169 (353)
T 1sxj_D 133 PYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLI 169 (353)
T ss_dssp SCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEE
T ss_pred CceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEE
Confidence 45789999999986432 23344445544444444443
No 343
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=28.86 E-value=25 Score=34.62 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=0.0
Q ss_pred eeeecccccccccc-cccchhhhhhcccccc----cceeec
Q 003178 537 MLVLDEADHLLDLG-FRKDVENIVDCLPRRR----QSLLFS 572 (842)
Q Consensus 537 ~lVlDEAh~lld~g-f~~~i~~Il~~l~~~~----q~il~S 572 (842)
+|||||||.++... .......++..+...+ ++|+++
T Consensus 90 vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~t 130 (199)
T 2r2a_A 90 IVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLT 130 (199)
T ss_dssp EEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEE
T ss_pred EEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEEC
No 344
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=28.86 E-value=21 Score=37.97 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=13.9
Q ss_pred cceEEeeccCCCcee
Q 003178 417 KDAVVKAKTGTGKSI 431 (842)
Q Consensus 417 ~dvii~A~TGSGKTl 431 (842)
..+++.||+|+|||.
T Consensus 52 ~~~ll~Gp~G~GKTT 66 (334)
T 1in4_A 52 DHVLLAGPPGLGKTT 66 (334)
T ss_dssp CCEEEESSTTSSHHH
T ss_pred CeEEEECCCCCcHHH
Confidence 578999999999999
No 345
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=28.71 E-value=15 Score=39.31 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=13.3
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
.++|+||||||||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999983
No 346
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=28.69 E-value=27 Score=37.92 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=20.3
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHh
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
.|.-+.+.+++|+|||+ ++-.+..++.
T Consensus 156 ~g~vi~lvG~nGsGKTT--ll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTT--SLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHH--HHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHH--HHHHHHhhcc
Confidence 46677899999999999 4555555554
No 347
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=28.67 E-value=23 Score=36.64 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=14.1
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
..+++.||+|+|||..
T Consensus 48 ~~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEEESCSSSSHHHH
T ss_pred eEEEEECCCCcCHHHH
Confidence 3689999999999984
No 348
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=28.63 E-value=13 Score=35.76 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=17.0
Q ss_pred ceEEeeccCCCceeeehhHHHHHHHh
Q 003178 418 DAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 418 dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
-+.|++++|||||+ ++-++..++.
T Consensus 4 ~v~IvG~SGsGKST--L~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTT--LITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHH--HHHHHHHHHH
T ss_pred EEEEECCCCCCHHH--HHHHHHHHhh
Confidence 35688999999999 4444544544
No 349
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=28.59 E-value=51 Score=34.81 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=15.3
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.|.-++|.|++|+|||..
T Consensus 106 ~G~i~~i~G~~GsGKT~l 123 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQL 123 (324)
T ss_dssp TTSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHhHH
Confidence 356788999999999984
No 350
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=28.56 E-value=21 Score=38.78 Aligned_cols=15 Identities=40% Similarity=0.477 Sum_probs=13.1
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
-++|+||||+|||..
T Consensus 25 ~~~i~G~NGaGKTTl 39 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSL 39 (365)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 567999999999983
No 351
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=28.40 E-value=15 Score=35.20 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=13.1
Q ss_pred cceEEeeccCCCcee
Q 003178 417 KDAVVKAKTGTGKSI 431 (842)
Q Consensus 417 ~dvii~A~TGSGKTl 431 (842)
.-+++.|+.|+|||+
T Consensus 3 ~ii~l~G~~GaGKST 17 (189)
T 2bdt_A 3 KLYIITGPAGVGKST 17 (189)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred eEEEEECCCCCcHHH
Confidence 346789999999999
No 352
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=28.30 E-value=16 Score=39.50 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=13.2
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
-++|+||||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 478999999999984
No 353
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=28.19 E-value=18 Score=36.32 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.6
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||.|||||+
T Consensus 28 ~~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKST 45 (224)
T ss_dssp ETTCEEEEEECTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 357778899999999999
No 354
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=28.00 E-value=19 Score=36.05 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.9
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||.|||||+
T Consensus 33 ~~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp ETTCCEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 357788899999999999
No 355
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=27.82 E-value=17 Score=39.58 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=14.9
Q ss_pred cCcc--eEEeeccCCCceee
Q 003178 415 EGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~d--vii~A~TGSGKTla 432 (842)
.|.+ ++..|.||||||.+
T Consensus 82 ~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHH
T ss_pred CCceeEEEeeCCCCCCCCEE
Confidence 3665 58899999999986
No 356
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=27.73 E-value=23 Score=34.37 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=14.0
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
.-++++|+.|||||+.
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999993
No 357
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=27.68 E-value=13 Score=31.98 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=31.2
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCc
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKP 666 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~ 666 (842)
+..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4568999999999999999999998888777777754
No 358
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=27.67 E-value=18 Score=37.77 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.7
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||+|||||+
T Consensus 32 ~~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKST 49 (275)
T ss_dssp ETTSEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 347778899999999999
No 359
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=27.64 E-value=15 Score=34.49 Aligned_cols=15 Identities=27% Similarity=0.197 Sum_probs=13.0
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
-+++.|+.|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 468999999999993
No 360
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=27.56 E-value=13 Score=32.59 Aligned_cols=36 Identities=8% Similarity=0.150 Sum_probs=30.1
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcC
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRK 665 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~ 665 (842)
+..+++|||.+...+...+..|.+.|+.+..+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 456899999999999999999999988776666765
No 361
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=27.48 E-value=18 Score=37.22 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.9
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||+|||||+
T Consensus 44 ~~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKST 61 (260)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 357788899999999999
No 362
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=27.45 E-value=17 Score=36.93 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.8
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||+|||||+
T Consensus 26 ~~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKST 43 (243)
T ss_dssp CTTEEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 357788899999999999
No 363
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=27.36 E-value=30 Score=37.03 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=20.1
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHh
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
.+.-+.+.|++|+|||+ ++..+..++.
T Consensus 128 ~g~vi~lvG~nGaGKTT--ll~~Lag~l~ 154 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTT--TIAKLANWLK 154 (328)
T ss_dssp SSEEEEEECCTTSSHHH--HHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHH--HHHHHHHHHH
Confidence 35677899999999999 5555555554
No 364
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=27.20 E-value=18 Score=36.38 Aligned_cols=18 Identities=33% Similarity=0.435 Sum_probs=15.8
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.+|.|||||+
T Consensus 32 ~~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp ETTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 357788899999999999
No 365
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=27.19 E-value=28 Score=33.20 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.3
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.+.-+++.|+.|||||+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456788999999999993
No 366
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=27.05 E-value=26 Score=33.17 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=13.0
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
-+++.|+.|||||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999993
No 367
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=26.99 E-value=22 Score=34.31 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.2
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.+.-+++.|+.|||||+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356788999999999993
No 368
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=26.98 E-value=24 Score=33.44 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=14.9
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.|.-+++.++.|||||++
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356678999999999993
No 369
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=26.94 E-value=24 Score=34.72 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=13.6
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
..+.+.|++|||||+.
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4577999999999993
No 370
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=26.92 E-value=13 Score=32.18 Aligned_cols=37 Identities=8% Similarity=0.136 Sum_probs=31.1
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHhhhHHHHhhcCc
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKP 666 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~~~v~~lhg~~~ 666 (842)
+..++||||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4568999999998899999999998888777777754
No 371
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=26.89 E-value=18 Score=36.85 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.9
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||.|||||+
T Consensus 33 ~~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKST 50 (247)
T ss_dssp ETTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 357788899999999999
No 372
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=26.89 E-value=13 Score=36.18 Aligned_cols=21 Identities=14% Similarity=0.030 Sum_probs=16.5
Q ss_pred hhhhcCcceEEeeccCCCcee
Q 003178 411 SACLEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 411 ~~il~g~dvii~A~TGSGKTl 431 (842)
+.+..+.-+.|.|++|||||+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKST 36 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTT 36 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHH
T ss_pred ccCCCCeEEEEECCCCCCHHH
Confidence 344446667899999999998
No 373
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=26.83 E-value=22 Score=37.45 Aligned_cols=17 Identities=41% Similarity=0.397 Sum_probs=14.8
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
...+++.||+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45699999999999983
No 374
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=26.69 E-value=24 Score=33.53 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.4
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+.-+++.|+.|||||+.
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45678999999999993
No 375
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=26.58 E-value=26 Score=36.28 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=16.2
Q ss_pred hcCcceEEeeccCCCceee
Q 003178 414 LEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTla 432 (842)
..|.-++|.|++|+|||..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTF 51 (296)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred CCCeEEEEEeCCCCCHHHH
Confidence 4577888999999999984
No 376
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=26.44 E-value=17 Score=35.53 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=15.4
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.|.-+++.|++|+|||..
T Consensus 19 ~G~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTL 36 (220)
T ss_dssp TTSEEEEECSTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 466788999999999984
No 377
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=26.43 E-value=25 Score=33.75 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=12.6
Q ss_pred ceEEeeccCCCcee
Q 003178 418 DAVVKAKTGTGKSI 431 (842)
Q Consensus 418 dvii~A~TGSGKTl 431 (842)
.+++.|+.|||||+
T Consensus 2 ~I~i~G~~GsGKsT 15 (205)
T 2jaq_A 2 KIAIFGTVGAGKST 15 (205)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 36899999999999
No 378
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=26.37 E-value=19 Score=36.92 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.7
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
-.|.-+.+.||.|||||+
T Consensus 31 ~~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKST 48 (257)
T ss_dssp ETTCEEEEECSTTSSHHH
T ss_pred eCCCEEEEECCCCCCHHH
Confidence 357778899999999999
No 379
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=26.36 E-value=24 Score=37.35 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=19.7
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHHh
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
.|.-+.|.|++|||||+ ++-+|..++.
T Consensus 89 ~g~ivgI~G~sGsGKST--L~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKST--TARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHH--HHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHH--HHHHHHhhcc
Confidence 35567799999999999 4555555554
No 380
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=26.35 E-value=24 Score=34.03 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.0
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.+.-+++.|+.|||||+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 355688999999999993
No 381
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=26.34 E-value=42 Score=41.25 Aligned_cols=71 Identities=11% Similarity=0.036 Sum_probs=47.1
Q ss_pred CceEEEEecchhHHHHHHHHHHHH----hhhHHHHhhcCcchhhhhhhHHHhhcceEEEEeccc-----cccC-C-CCCC
Q 003178 631 DYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----SARG-M-DYPD 699 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTdv-----~arG-l-Dip~ 699 (842)
+.++||.+|++.-+...+..++.. ++.+..+||+.+...+...+. ....|+|+|.- +.++ + .+..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 678999999999999988888776 778889999986554432221 24679999842 1222 3 5667
Q ss_pred cceeEE
Q 003178 700 VTSVVQ 705 (842)
Q Consensus 700 V~~VI~ 705 (842)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788774
No 382
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=26.32 E-value=22 Score=38.28 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=15.4
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
....+++.||+|+|||..
T Consensus 71 ~~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCCEEEECCCCCCHHHH
Confidence 356799999999999984
No 383
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=26.31 E-value=32 Score=37.27 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=18.8
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHH
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAV 441 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l 441 (842)
.|.-++|.+|.|+|||.. ++.++..+
T Consensus 60 ~G~i~~I~GppGsGKSTL-al~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTL-ALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHH
Confidence 356788999999999984 44444433
No 384
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=26.21 E-value=19 Score=37.21 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=15.7
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||.|||||+
T Consensus 35 ~~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKST 52 (266)
T ss_dssp ETTCEEEEECCTTSCHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 347778899999999999
No 385
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=25.90 E-value=20 Score=40.04 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=29.2
Q ss_pred cccccccCCCchhHhhhcccceeeeeehhh-hhhh-hhhcCcceEEeeccCCCceee
Q 003178 378 QKRFDECGISPLTIKALTAAGYIQMTRVQE-ATLS-ACLEGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 378 ~~~F~~l~l~~~l~~~L~~~g~~~~t~iQ~-~aI~-~il~g~dvii~A~TGSGKTla 432 (842)
...|+++.-...+.+.|...-.. |++. ..+. .....+.+++.||+|+|||+.
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~---p~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVIL---PIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTH---HHHCTTTTSGGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH---HhhCHHHhhccCCCCceEEEECCCCCCHHHH
Confidence 45688876666666666532100 0000 0000 112246799999999999983
No 386
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=25.85 E-value=20 Score=36.89 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.6
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||.|||||+
T Consensus 30 ~~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKST 47 (262)
T ss_dssp CTTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 347778899999999999
No 387
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=25.68 E-value=30 Score=33.08 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.7
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+.-+++.|+.|||||..
T Consensus 12 ~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp SCEEEEEECTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45688999999999993
No 388
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=25.55 E-value=31 Score=39.14 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=19.4
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHHh
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
|.-+.+.|++|+|||+ ++-.|..++.
T Consensus 293 GeVI~LVGpNGSGKTT--Ll~~LAgll~ 318 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTT--TIGKLARQFE 318 (503)
T ss_dssp TEEEEEECCTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEEECCCcccHHH--HHHHHHHHhh
Confidence 5567799999999999 4555555554
No 389
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=25.49 E-value=20 Score=36.30 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.7
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||.|+|||+
T Consensus 30 ~~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTT 47 (240)
T ss_dssp ETTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 357778899999999999
No 390
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=25.28 E-value=35 Score=36.76 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=18.6
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHH
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAV 441 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l 441 (842)
.|.-++|.++.|+|||.. ++.++..+
T Consensus 60 ~G~iv~I~G~pGsGKTtL-al~la~~~ 85 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTV-ALHAVANA 85 (349)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHH
Confidence 467788999999999985 34444333
No 391
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=25.21 E-value=44 Score=39.47 Aligned_cols=73 Identities=19% Similarity=0.348 Sum_probs=50.0
Q ss_pred EEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeee---eccccccC--CCceEEecCccchhhhccccCCceEEEe
Q 003178 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK---VDQRRLES--DPCQILVATPGRLLDHIENKSGLSVRLM 533 (842)
Q Consensus 459 LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~---~~~~~l~~--~~~~IIVaTPgrLl~~L~~~~~~~~~L~ 533 (842)
+|+++|+.-+.++++.+.+. ++.+..++|+.... .....+.. +..+|+|||. .+..+ +++
T Consensus 324 iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e~G----lDi- 388 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIGMG----LNL- 388 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGGSS----CCC-
T ss_pred EEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHHCC----cCc-
Confidence 56688888888888777663 57788999987654 23344454 5689999994 33333 455
Q ss_pred cceeeeecccccc
Q 003178 534 GLKMLVLDEADHL 546 (842)
Q Consensus 534 ~l~~lVlDEAh~l 546 (842)
++++||.-.+.+.
T Consensus 389 ~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 389 SIRRIIFYSLIKP 401 (677)
T ss_dssp CBSEEEESCSBC-
T ss_pred CccEEEECCcccc
Confidence 6888887776553
No 392
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=25.15 E-value=27 Score=36.55 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=16.4
Q ss_pred ceEEeeccCCCceeeehhHHHHHHHh
Q 003178 418 DAVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 418 dvii~A~TGSGKTlafllPil~~l~~ 443 (842)
-+.|+|++|||||+. .-.|..++.
T Consensus 33 ii~I~G~sGsGKSTl--a~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFT--SIQIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhh
Confidence 456899999999983 334444443
No 393
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=25.13 E-value=19 Score=31.26 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=30.6
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHhhh-HHHHhhcCc
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMKMN-VREMYSRKP 666 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~~~-v~~lhg~~~ 666 (842)
...++||||.+...+...+..|...|+. +..|.|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3568999999998999999999999884 777777754
No 394
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=25.07 E-value=30 Score=30.83 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=30.5
Q ss_pred ceEEEEe-cchhHHHHHHHHHHHHhhhHHHHhhcCcc
Q 003178 632 YKVIVFC-STGMVTSLLYLLLREMKMNVREMYSRKPQ 667 (842)
Q Consensus 632 ~kiIVF~-~s~~~~~~l~~~L~~~~~~v~~lhg~~~~ 667 (842)
.++|||| .+-..+...+..|+..|+++..|.|++..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 6899999 57788889999999999988888888653
No 395
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=25.03 E-value=28 Score=33.15 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=15.1
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.+.-+++.|+.|||||..
T Consensus 12 ~~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356688999999999994
No 396
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=24.92 E-value=17 Score=34.50 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=14.3
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+.-+++.|+.|||||+.
T Consensus 3 ~~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34578999999999994
No 397
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=24.81 E-value=22 Score=36.77 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.8
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||.|+|||+
T Consensus 44 ~~Ge~~~l~G~NGsGKST 61 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKST 61 (267)
T ss_dssp CTTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 357788899999999999
No 398
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=24.74 E-value=24 Score=37.89 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=15.1
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
.+.+++.||+|+|||+.
T Consensus 117 ~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CSEEEEESSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 56799999999999994
No 399
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=24.66 E-value=22 Score=36.54 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.7
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||.|||||+
T Consensus 39 ~~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp CTTCEEEEECCTTSSHHH
T ss_pred cCCcEEEEECCCCCCHHH
Confidence 357778899999999999
No 400
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=24.62 E-value=22 Score=36.71 Aligned_cols=18 Identities=44% Similarity=0.593 Sum_probs=15.6
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
-.|.-+.+.||.|+|||+
T Consensus 48 ~~Gei~~liG~NGsGKST 65 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKST 65 (263)
T ss_dssp CTTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEEcCCCCcHHH
Confidence 357778899999999999
No 401
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=24.54 E-value=27 Score=38.93 Aligned_cols=17 Identities=29% Similarity=0.602 Sum_probs=15.1
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
++.+++.||+|+|||+.
T Consensus 63 ~~~iLl~GppGtGKT~l 79 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTAL 79 (456)
T ss_dssp TCEEEEECCTTSSHHHH
T ss_pred CCeEEEECCCcCCHHHH
Confidence 46899999999999984
No 402
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=24.39 E-value=22 Score=36.79 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.7
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
-.|.-+.|.||.|||||+
T Consensus 43 ~~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKST 60 (271)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 357778899999999999
No 403
>2pv9_C Proteinase-activated receptor 4; serine protease, hydrolase; HET: NAG; 3.50A {Mus musculus}
Probab=24.20 E-value=16 Score=23.62 Aligned_cols=8 Identities=50% Similarity=1.240 Sum_probs=5.9
Q ss_pred CCccCCCC
Q 003178 30 GPRTFPGG 37 (842)
Q Consensus 30 ~~~~~~~~ 37 (842)
|||.|||-
T Consensus 7 ~P~~~Pg~ 14 (26)
T 2pv9_C 7 NPRGYPGK 14 (26)
T ss_dssp EECSCTTT
T ss_pred CCccCCCC
Confidence 67888874
No 404
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=24.19 E-value=23 Score=36.58 Aligned_cols=18 Identities=44% Similarity=0.595 Sum_probs=15.7
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||.|||||+
T Consensus 31 ~~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKST 48 (266)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 357778899999999999
No 405
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=24.16 E-value=22 Score=36.24 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.8
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||.|+|||+
T Consensus 27 ~~Ge~~~l~G~nGsGKST 44 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKST 44 (250)
T ss_dssp ETTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 357778899999999999
No 406
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=24.04 E-value=23 Score=36.30 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.6
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||.|+|||+
T Consensus 24 ~~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKST 41 (249)
T ss_dssp ETTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 347778899999999999
No 407
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=23.99 E-value=23 Score=36.31 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=15.6
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||.|||||+
T Consensus 29 ~~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKST 46 (253)
T ss_dssp ETTCEEEEECCSSSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 357778899999999999
No 408
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=23.94 E-value=36 Score=35.91 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=14.2
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
++-+++.+++|+|||+.
T Consensus 104 ~~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTS 120 (306)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCChHHHH
Confidence 45677999999999984
No 409
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=23.68 E-value=23 Score=36.90 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=15.7
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
-.|.-+.+.||.|+|||+
T Consensus 45 ~~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTT 62 (279)
T ss_dssp ETTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 357778899999999999
No 410
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=23.62 E-value=38 Score=36.09 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=16.9
Q ss_pred eEEeeccCCCceeeehhHHHHHHHh
Q 003178 419 AVVKAKTGTGKSIAFLLPAIEAVLK 443 (842)
Q Consensus 419 vii~A~TGSGKTlafllPil~~l~~ 443 (842)
+.|.|++|||||+ ++-+|..++.
T Consensus 95 igI~GpsGSGKST--l~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKST--TSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHH--HHHHHHHHHT
T ss_pred EEEECCCCCCHHH--HHHHHHHHhc
Confidence 5689999999999 4455555554
No 411
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=23.51 E-value=21 Score=34.66 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=12.1
Q ss_pred eEEeeccCCCcee
Q 003178 419 AVVKAKTGTGKSI 431 (842)
Q Consensus 419 vii~A~TGSGKTl 431 (842)
+++.|+.|||||+
T Consensus 3 I~i~G~~GsGKsT 15 (214)
T 1gtv_A 3 IAIEGVDGAGKRT 15 (214)
T ss_dssp EEEEEEEEEEHHH
T ss_pred EEEEcCCCCCHHH
Confidence 6789999999999
No 412
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=23.16 E-value=16 Score=38.66 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=16.0
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
-.|.-+.|++|+|||||+
T Consensus 78 ~~Ge~vaivG~sGsGKST 95 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKST 95 (306)
T ss_dssp CTTCEEEEESSSCHHHHH
T ss_pred cCCCEEEEECCCCchHHH
Confidence 357888999999999999
No 413
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=23.13 E-value=39 Score=36.55 Aligned_cols=26 Identities=23% Similarity=0.297 Sum_probs=18.9
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHH
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAV 441 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l 441 (842)
.|+-++|.++.|+|||.. ++.++..+
T Consensus 62 ~G~ii~I~G~pGsGKTtL-al~la~~~ 87 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTL-TLQVIAAA 87 (356)
T ss_dssp TTSEEEEECSTTSSHHHH-HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHH
Confidence 467789999999999985 34444333
No 414
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=23.11 E-value=20 Score=35.58 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.6
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.|.-+++.+++|+|||..
T Consensus 23 ~G~~~~i~G~~GsGKTtl 40 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQI 40 (243)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCcHHHH
Confidence 467788999999999994
No 415
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=22.99 E-value=22 Score=35.19 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=14.4
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
...+++.|++|||||..
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35688999999999993
No 416
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=22.91 E-value=19 Score=39.12 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=15.2
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
.+.+++.||+|+|||+.
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999983
No 417
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=22.90 E-value=35 Score=32.95 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.4
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.+.-+++.|+.|||||+.
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 456788999999999993
No 418
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=22.69 E-value=42 Score=36.45 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=19.6
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHH
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~ 442 (842)
.|.-++|.++.|+|||.. ++.++..+.
T Consensus 73 ~G~li~I~G~pGsGKTtl-al~la~~~~ 99 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTL-ALAIVAQAQ 99 (366)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHH-HHHHHHHHH
Confidence 356788999999999984 555554443
No 419
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=22.65 E-value=23 Score=30.70 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=30.8
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHhhh-HHHHhhcCc
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMKMN-VREMYSRKP 666 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~~~-v~~lhg~~~ 666 (842)
+..+++|||.+...+...+..|...|+. +..+.|++.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 4568999999988999999999999984 667777754
No 420
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=22.64 E-value=34 Score=33.26 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=13.9
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+.-+.+.|+.|||||+.
T Consensus 22 ~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp SEEEEEEECTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34577999999999993
No 421
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=22.44 E-value=21 Score=33.84 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.3
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
-+++.|+.|||||+.
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999993
No 422
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=22.31 E-value=36 Score=32.67 Aligned_cols=15 Identities=20% Similarity=0.042 Sum_probs=12.5
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
-+.+.|+.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 356889999999983
No 423
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=22.31 E-value=32 Score=33.20 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=14.3
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+..+++.|+.|||||..
T Consensus 20 ~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34588999999999993
No 424
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=22.31 E-value=34 Score=30.58 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=30.6
Q ss_pred CCceEEEEecchhH--HHHHHHHHHHHhhhHHHHhhcCc
Q 003178 630 PDYKVIVFCSTGMV--TSLLYLLLREMKMNVREMYSRKP 666 (842)
Q Consensus 630 ~~~kiIVF~~s~~~--~~~l~~~L~~~~~~v~~lhg~~~ 666 (842)
+..++||||.+-.. +...+..|...|+.+..+.|++.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 45689999998776 78899999999988777777754
No 425
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=22.23 E-value=13 Score=43.63 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=48.3
Q ss_pred CceEEEEecchhHHHHH-HHHHHHHh---hhHHHHhhcCcchhhhhhhHHHhhcceEEEEecc-ccc-----------cC
Q 003178 631 DYKVIVFCSTGMVTSLL-YLLLREMK---MNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-VSA-----------RG 694 (842)
Q Consensus 631 ~~kiIVF~~s~~~~~~l-~~~L~~~~---~~v~~lhg~~~~~~R~~v~~~F~~g~~~VLVaTd-v~a-----------rG 694 (842)
..++||.+|++.-+... +..|++.. +.+..+||+.+...+...+. +...|||+|. .+. ..
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~ 131 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 131 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------C
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccc
Confidence 36899999999999888 88888775 78889999987655433322 5688999985 222 23
Q ss_pred CCCCCcceeEE
Q 003178 695 MDYPDVTSVVQ 705 (842)
Q Consensus 695 lDip~V~~VI~ 705 (842)
+.+..+++||.
T Consensus 132 ~~~~~~~lvVi 142 (699)
T 4gl2_A 132 VQLSDFSLIII 142 (699)
T ss_dssp CCGGGCSEEEE
T ss_pred eecccCcEEEE
Confidence 56677888773
No 426
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=22.08 E-value=33 Score=34.56 Aligned_cols=17 Identities=29% Similarity=0.118 Sum_probs=13.9
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
|.-+-|.|+.|||||+.
T Consensus 25 g~iigI~G~~GsGKSTl 41 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTV 41 (245)
T ss_dssp SEEEEEECSTTSSHHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 44567999999999993
No 427
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=22.03 E-value=24 Score=36.82 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=14.2
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+.-++++|+.|||||..
T Consensus 33 ~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34578999999999993
No 428
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=21.97 E-value=26 Score=35.08 Aligned_cols=16 Identities=31% Similarity=0.200 Sum_probs=13.8
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
+.+++.||.|+|||..
T Consensus 59 n~ili~GPPGtGKTt~ 74 (212)
T 1tue_A 59 NCLVFCGPANTGKSYF 74 (212)
T ss_dssp SEEEEESCGGGCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3588999999999984
No 429
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=21.82 E-value=40 Score=33.14 Aligned_cols=17 Identities=12% Similarity=0.263 Sum_probs=14.4
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
...+++.|+.|||||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQ 21 (222)
T ss_dssp SCCEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34688999999999993
No 430
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=21.81 E-value=21 Score=33.45 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=14.1
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
+++++.+..|||||.+
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4788999999999994
No 431
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=21.61 E-value=26 Score=31.66 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=30.7
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHhhh-HHHHhhcCc
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMKMN-VREMYSRKP 666 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~~~-v~~lhg~~~ 666 (842)
+..++||||.+-..+...+..|...|+. +..|.|++.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999998999999999999884 767777754
No 432
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=21.57 E-value=37 Score=31.55 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=13.6
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
+.+++.|+.|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3578999999999994
No 433
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=21.50 E-value=21 Score=34.84 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=13.0
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
.+++.|+.|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999994
No 434
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=21.49 E-value=31 Score=35.84 Aligned_cols=42 Identities=21% Similarity=0.115 Sum_probs=28.1
Q ss_pred chhHhhhcccceeeeeehhhh-hhhhhhcCc-----ceEEeeccCCCceee
Q 003178 388 PLTIKALTAAGYIQMTRVQEA-TLSACLEGK-----DAVVKAKTGTGKSIA 432 (842)
Q Consensus 388 ~~l~~~L~~~g~~~~t~iQ~~-aI~~il~g~-----dvii~A~TGSGKTla 432 (842)
..+.+-|+..||. +++-. ++..++.++ .+++.||.|+|||+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~ 120 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNI 120 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHH
Confidence 3566777666765 44432 344555543 488999999999994
No 435
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=21.47 E-value=31 Score=40.03 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=13.6
Q ss_pred ceEEeeccCCCcee
Q 003178 418 DAVVKAKTGTGKSI 431 (842)
Q Consensus 418 dvii~A~TGSGKTl 431 (842)
++++.||+|+|||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999998
No 436
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=21.32 E-value=29 Score=41.89 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=15.4
Q ss_pred cCcceEEeeccCCCcee
Q 003178 415 EGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTl 431 (842)
.++.++++||+|+|||+
T Consensus 237 ~~~~vLL~Gp~GtGKTt 253 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTL 253 (806)
T ss_dssp CCCEEEECSCTTSSHHH
T ss_pred CCCeEEEECcCCCCHHH
Confidence 46789999999999998
No 437
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=21.28 E-value=29 Score=36.34 Aligned_cols=18 Identities=33% Similarity=0.435 Sum_probs=15.8
Q ss_pred hcCcceEEeeccCCCcee
Q 003178 414 LEGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTl 431 (842)
..|.-+.+.||.|+|||+
T Consensus 62 ~~Ge~~~i~G~NGsGKST 79 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTS 79 (290)
T ss_dssp CTTCEEEEEESTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 357788899999999999
No 438
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=21.21 E-value=39 Score=31.77 Aligned_cols=15 Identities=33% Similarity=0.394 Sum_probs=13.4
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
.+++.++.|||||..
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 588999999999994
No 439
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=21.16 E-value=56 Score=34.84 Aligned_cols=18 Identities=17% Similarity=-0.049 Sum_probs=15.2
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.|.-++|.|++|+|||..
T Consensus 121 ~G~i~~I~G~~GsGKTtl 138 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQL 138 (343)
T ss_dssp SSEEEEEECCTTCTHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356788999999999984
No 440
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=21.12 E-value=32 Score=36.35 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=15.4
Q ss_pred ceEEeeccCCCceeeehhHHHH
Q 003178 418 DAVVKAKTGTGKSIAFLLPAIE 439 (842)
Q Consensus 418 dvii~A~TGSGKTlafllPil~ 439 (842)
-.++.|++|+|||. ++-++.
T Consensus 26 ~~~i~G~NGsGKS~--ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSN--IIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTH--HHHHHH
T ss_pred cEEEECCCCCcHHH--HHHHHH
Confidence 56799999999999 444443
No 441
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=21.03 E-value=37 Score=33.30 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.4
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+..+++.|+.|||||+.
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34688999999999993
No 442
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=21.01 E-value=37 Score=32.34 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=12.4
Q ss_pred eEEeeccCCCceee
Q 003178 419 AVVKAKTGTGKSIA 432 (842)
Q Consensus 419 vii~A~TGSGKTla 432 (842)
+++.|+.|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999994
No 443
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=20.95 E-value=29 Score=34.84 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=14.1
Q ss_pred CcceEEeeccCCCcee
Q 003178 416 GKDAVVKAKTGTGKSI 431 (842)
Q Consensus 416 g~dvii~A~TGSGKTl 431 (842)
+.-+++.|+.|||||+
T Consensus 27 ~~~i~l~G~~GsGKST 42 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGT 42 (246)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 4568899999999999
No 444
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=20.81 E-value=43 Score=32.38 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.3
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.+.-+++.|+.|||||+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356788999999999994
No 445
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=20.81 E-value=28 Score=31.66 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=30.9
Q ss_pred CCceEEEEecchhHHHHHHHHHHHHhhh-HHHHhhcCc
Q 003178 630 PDYKVIVFCSTGMVTSLLYLLLREMKMN-VREMYSRKP 666 (842)
Q Consensus 630 ~~~kiIVF~~s~~~~~~l~~~L~~~~~~-v~~lhg~~~ 666 (842)
...++||||.+-..+...+..|+..|+. |..|.|++.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 3568999999988888999999999985 777878754
No 446
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=20.79 E-value=25 Score=33.33 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=13.7
Q ss_pred cceEEeeccCCCceee
Q 003178 417 KDAVVKAKTGTGKSIA 432 (842)
Q Consensus 417 ~dvii~A~TGSGKTla 432 (842)
..+++.|+.|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3578999999999994
No 447
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=20.69 E-value=64 Score=28.07 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=28.6
Q ss_pred ccchhhhhhhhcccCCCCCccCCCCcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 003178 13 LTNILWFNRVFARPMGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLEQEKQLYQARVRSQIRTKLFDK 81 (842)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (842)
-|+.| |-....|-.++-+. -..+-|+.|-.++.+++++++ .++.+.||++.+.+
T Consensus 43 dTdeL-Wk~~c~rdF~~~~p-----~e~esWRelY~rl~~ere~kL---------~~lT~~I~~a~~~~ 96 (97)
T 4hfx_A 43 ETDQL-WKVHCHRDFKEERP-----EEYESWREMYLRLQDAREQRL---------RVLTKNIQFAHANK 96 (97)
T ss_dssp CCHHH-HHHHC----CCSCC-----CSSSCHHHHHHHHHHHHHHHH---------HHHHCC--------
T ss_pred hhHHH-HHHHHHhHCcccCC-----CCCCCHHHHHHHHHHHHHHHH---------HHHHHHHHHHhccC
Confidence 47788 55555555554332 445789999999988888554 35667777776654
No 448
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=20.61 E-value=38 Score=35.60 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=17.8
Q ss_pred CcceEEeeccCCCceeeehhHHHHHHH
Q 003178 416 GKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 416 g~dvii~A~TGSGKTlafllPil~~l~ 442 (842)
+.-+.|.|++|||||+ ++-+|..++
T Consensus 80 g~iigI~G~~GsGKST--l~~~L~~~l 104 (308)
T 1sq5_A 80 PYIISIAGSVAVGKST--TARVLQALL 104 (308)
T ss_dssp CEEEEEEECTTSSHHH--HHHHHHHHH
T ss_pred CEEEEEECCCCCCHHH--HHHHHHHHH
Confidence 4456699999999999 444554444
No 449
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=20.61 E-value=49 Score=37.02 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=15.0
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
..++++.||+|+|||..
T Consensus 201 ~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SCEEEEESCTTTTTHHH
T ss_pred CCCeEEECCCCCCHHHH
Confidence 45889999999999994
No 450
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=20.50 E-value=93 Score=36.58 Aligned_cols=50 Identities=26% Similarity=0.395 Sum_probs=38.6
Q ss_pred EEEEeccchhHHHHHHHHHHHhhhcCCceeEEEEecceeeeeccccccCCCceEEecCc
Q 003178 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATP 515 (842)
Q Consensus 457 ~~LIL~PTReLA~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~~IIVaTP 515 (842)
++||.++|+.-+.++++.+.+. ++.+..++|+..... ..+++.+|||||.
T Consensus 398 ~vLVFv~Tr~~ae~la~~L~~~-----g~~v~~lHG~l~q~e----r~~~~~~VLVATd 447 (666)
T 3o8b_A 398 RHLIFCHSKKKCDELAAKLSGL-----GINAVAYYRGLDVSV----IPTIGDVVVVATD 447 (666)
T ss_dssp EEEEECSCHHHHHHHHHHHHTT-----TCCEEEECTTSCGGG----SCSSSCEEEEECT
T ss_pred cEEEEeCCHHHHHHHHHHHHhC-----CCcEEEecCCCCHHH----HHhCCCcEEEECC
Confidence 6999999999999988887764 677888888865432 3345569999994
No 451
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=20.36 E-value=40 Score=32.37 Aligned_cols=14 Identities=36% Similarity=0.354 Sum_probs=12.3
Q ss_pred ceEEeeccCCCcee
Q 003178 418 DAVVKAKTGTGKSI 431 (842)
Q Consensus 418 dvii~A~TGSGKTl 431 (842)
-+++.|+.|||||.
T Consensus 8 ~i~i~G~sGsGKTT 21 (174)
T 1np6_A 8 LLAFAAWSGTGKTT 21 (174)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEEeCCCCCHHH
Confidence 46789999999998
No 452
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=20.28 E-value=27 Score=37.52 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 003178 98 EHVKALADRFM 108 (842)
Q Consensus 98 ~~~~~~~~~~~ 108 (842)
..+.+||+-|.
T Consensus 174 ~~~~~l~~~l~ 184 (386)
T 2ca6_A 174 GSMKEWAKTFQ 184 (386)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444544443
No 453
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=20.24 E-value=45 Score=37.15 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=19.1
Q ss_pred hcCcceEEeeccCCCceeeehhHHHHHH
Q 003178 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAV 441 (842)
Q Consensus 414 l~g~dvii~A~TGSGKTlafllPil~~l 441 (842)
..|.-++|.|++|+|||.. ++-+...+
T Consensus 201 ~~G~liiI~G~pG~GKTtl-~l~ia~~~ 227 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAF-ALNIAQNV 227 (454)
T ss_dssp CTTCEEEEECCTTSCHHHH-HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 3467788999999999984 44444333
No 454
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=20.18 E-value=24 Score=34.56 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=13.0
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
.+++.|+.|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999994
No 455
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=20.16 E-value=25 Score=33.10 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=10.5
Q ss_pred CcceEEeeccCCCceee
Q 003178 416 GKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 416 g~dvii~A~TGSGKTla 432 (842)
+.-+++.|+.|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHT 21 (183)
T ss_dssp CCEEEEECCC----CHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999994
No 456
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=20.15 E-value=24 Score=34.11 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=13.2
Q ss_pred ceEEeeccCCCceee
Q 003178 418 DAVVKAKTGTGKSIA 432 (842)
Q Consensus 418 dvii~A~TGSGKTla 432 (842)
-+++.|+.|||||..
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999993
No 457
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=20.08 E-value=30 Score=41.14 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=18.9
Q ss_pred hhhhhhcCcc--eEEeeccCCCceee
Q 003178 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (842)
Q Consensus 409 aI~~il~g~d--vii~A~TGSGKTla 432 (842)
.+..++.|.+ ++..|.||||||.+
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~T 479 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFT 479 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhc
Confidence 5667778876 45778999999986
No 458
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=20.02 E-value=28 Score=42.02 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=15.3
Q ss_pred cCcceEEeeccCCCcee
Q 003178 415 EGKDAVVKAKTGTGKSI 431 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTl 431 (842)
.++.+++.+|+|+|||+
T Consensus 510 ~~~~vLL~GppGtGKT~ 526 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTL 526 (806)
T ss_dssp CCCCCCCBCCTTSSHHH
T ss_pred CCceeEEECCCCCCHHH
Confidence 46789999999999999
No 459
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=20.01 E-value=46 Score=36.90 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=18.9
Q ss_pred cCcceEEeeccCCCceeeehhHHHHHHH
Q 003178 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTlafllPil~~l~ 442 (842)
.|.-++|.|++|+|||.. ++-+...+.
T Consensus 199 ~G~l~ii~G~pg~GKT~l-al~ia~~~a 225 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAF-ALTIAQNAA 225 (444)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHH
Confidence 456778999999999974 444444433
No 460
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=20.01 E-value=49 Score=35.12 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=14.7
Q ss_pred cCcceEEeeccCCCceee
Q 003178 415 EGKDAVVKAKTGTGKSIA 432 (842)
Q Consensus 415 ~g~dvii~A~TGSGKTla 432 (842)
.++-+.+.+++|+|||+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~ 121 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTS 121 (320)
T ss_dssp SCEEEEEESSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355677889999999984
Done!