BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003179
(842 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 332 bits (851), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 188/346 (54%), Positives = 233/346 (67%), Gaps = 19/346 (5%)
Query: 4 ICVAVRVRPPVSLETSGG----VFWKVEDNRVSLHRQHDTPVSGT-SYAFDHVFEETCSN 58
+ V VRVRP S E S G V+WK ++N + V G+ S+ FD VF +
Sbjct: 6 VAVCVRVRPLNSREESLGETAQVYWKTDNNVIY-------QVDGSKSFNFDRVFHGNETT 58
Query: 59 ARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQM 118
VYE + II +A++G+NGT+FAYGQT+SGKT+TM GS D+ GVI + DIF I+
Sbjct: 59 KNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKK 118
Query: 119 MSNREFLVRVSYMEIYNEEINDLLAVENQKLQ---IHESLEHGVFVAGLREEIVNSAEQV 175
+REFL+RVSYMEIYNE I DLL QK++ I E + V+VA L EE+V ++E
Sbjct: 119 FPDREFLLRVSYMEIYNETITDLLC-GTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMA 177
Query: 176 LKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAG 235
LK I GE +RH+GET MN RSSRSHTIFRM++ES+ K S+ +++VS LNLVDLAG
Sbjct: 178 LKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAG 237
Query: 236 SERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALG 295
SER A+TGA GVRLKEG +IN+SL LG VI KLSDG + G I YRDSKLTRILQ +LG
Sbjct: 238 SERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDG-QVGGFINYRDSKLTRILQNSLG 296
Query: 296 GNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILTD 341
GNAKT IICTI P +ET LQFAS AK + N VNE+ TD
Sbjct: 297 GNAKTRIICTITPVS--FDETLTALQFASTAKYMKNTPYVNEVSTD 340
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 266 bits (679), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 166/370 (44%), Positives = 219/370 (59%), Gaps = 26/370 (7%)
Query: 2 EKICVAVRVRP-PVSLETSGGVFW-----KVEDNRVSLHRQHDTPVSGTSYAFDHVFEET 55
+ I V R RP S E +G F VE+N +S ++G Y FD VF+
Sbjct: 11 DSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCIS--------IAGKVYLFDKVFKPN 62
Query: 56 CSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNP---GVISLGVKDI 112
S +VY K I+ + G+NGT+FAYGQTSSGKT TM G + G+I V DI
Sbjct: 63 ASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDI 122
Query: 113 FDAIQMMS-NREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFVAGLREEIVNS 171
F+ I M N EF ++VSY EIY ++I DLL V L +HE +V G E V+S
Sbjct: 123 FNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSS 182
Query: 172 AEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLV 231
E V ++IE G+ NRH TNMN SSRSH++F + ++ + +N + L LV
Sbjct: 183 PEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGK-----LYLV 237
Query: 232 DLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQ 291
DLAGSE+++KTGA+G L E K+INKSL ALGNVI+ L+DG + HIPYRDSKLTRILQ
Sbjct: 238 DLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADG--NKTHIPYRDSKLTRILQ 295
Query: 292 PALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQKLE 351
+LGGNA+T+I+ +P + ETK TL F RAK + N V VNE LT A KR+ +
Sbjct: 296 ESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELT-AEEWKRRYEK 354
Query: 352 IEELRRKLQG 361
+E +L+G
Sbjct: 355 EKEKNARLKG 364
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 261 bits (666), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 160/362 (44%), Positives = 214/362 (59%), Gaps = 25/362 (6%)
Query: 2 EKICVAVRVRPPVSLETSGGVFWKVEDNRVSLHR---------QHDTPVSGTSYAFDHVF 52
E + V VR RP E + + KV D V L + H+ P ++ FD V+
Sbjct: 21 ESVRVVVRCRPMNGKEKAAS-YDKVVDVDVKLGQVSVKNPKGTAHEMP---KTFTFDAVY 76
Query: 53 EETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNP---GVISLGV 109
+ +Y+ + ++ + ++GFNGT+FAYGQT +GKT+TM G +P GVI
Sbjct: 77 DWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSF 136
Query: 110 KDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVENQK-LQIHESLEHGVFVAGLREEI 168
IF I N+++LVR SY+EIY EEI DLL+ + K L++ E + GV+V L +
Sbjct: 137 DHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFV 196
Query: 169 VNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESK--GKDNDSSSTDAIRVS 226
S +++ ++ G NR G TNMN SSRSH IF + IE G D + + IRV
Sbjct: 197 TKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGE----NHIRVG 252
Query: 227 VLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKL 286
LNLVDLAGSER AKTGA G RLKE IN SL ALGNVI+ L DG + HIPYRDSKL
Sbjct: 253 KLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDG--KSTHIPYRDSKL 310
Query: 287 TRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILTDAALLK 346
TR+LQ +LGGNAKT ++ + P ++EET TL++A+RAK I N +VNE DA L +
Sbjct: 311 TRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLRE 370
Query: 347 RQ 348
Q
Sbjct: 371 FQ 372
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 258 bits (659), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 159/355 (44%), Positives = 212/355 (59%), Gaps = 20/355 (5%)
Query: 2 EKICVAVRVRPPVSLETSGGVFWKVEDNRVSLHRQHDTP---VSGT-------SYAFDHV 51
+ I V VR RP + ET + + S D P S T ++ FD V
Sbjct: 4 DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAV 63
Query: 52 FEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKD 111
+++T N +++ K +I A +EGFN T+FAYGQT +GKT+TM G+ + PG I K
Sbjct: 64 YDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKH 123
Query: 112 IFDAIQ-MMSNREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFVAGLREEIVN 170
+FDAI SN+ FLV SY+E+YNEEI DL+ N KL + E G++V GL V
Sbjct: 124 LFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK-NNTKLPLKEDKTRGIYVDGLSMHRVT 182
Query: 171 SAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIE-SKGKDNDSSSTDAIRVSVLN 229
+A ++ L++ G NRH T MN SSRSH+IF + IE S+ +N + IRV LN
Sbjct: 183 TAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENK----EVIRVGKLN 238
Query: 230 LVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRI 289
LVDLAGSER +KTGA G L EG IN SL ALG VI+KL +G HIPYRDSKLTR+
Sbjct: 239 LVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGAT---HIPYRDSKLTRL 295
Query: 290 LQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILTDAAL 344
LQ +LGGN+KT + I+P + +ET TL++A RAK+I N ++NE DA +
Sbjct: 296 LQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDAQI 350
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 258 bits (659), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 154/342 (45%), Positives = 206/342 (60%), Gaps = 19/342 (5%)
Query: 4 ICVAVRVRPPVSLETSGGVFWKVEDNRVSLHRQHDTPV-SGTSYAFDHVFEETCSNARVY 62
I V R RP E + G D ++ + DT V + YAFD VF+ + S +VY
Sbjct: 9 IKVMCRFRPLNESEVNRG------DKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVY 62
Query: 63 ELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNP---GVISLGVKDIFDAIQMM 119
K I+ +EG+NGT+FAYGQTSSGKT TM G +P G+I V+DIF+ I M
Sbjct: 63 NDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSM 122
Query: 120 S-NREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFVAGLREEIVNSAEQVLKL 178
N EF ++VSY EIY ++I DLL V L +HE +V G E V S ++V+
Sbjct: 123 DENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDT 182
Query: 179 IESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAGSER 238
I+ G+ NRH TNMN SSRSH+IF + ++ +++ T+ L LVDLAGSE+
Sbjct: 183 IDEGKSNRHVAVTNMNEHSSRSHSIFLINVK-----QENTQTEQKLSGKLYLVDLAGSEK 237
Query: 239 IAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNA 298
++KTGA+G L E K+INKSL ALGNVI+ L++G ++PYRDSK+TRILQ +LGGN
Sbjct: 238 VSKTGAEGAVLDEAKNINKSLSALGNVISALAEG---STYVPYRDSKMTRILQDSLGGNC 294
Query: 299 KTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILT 340
+T+I+ +P + ETK TL F RAK I N V VN LT
Sbjct: 295 RTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNVELT 336
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 257 bits (657), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 145/305 (47%), Positives = 193/305 (63%), Gaps = 12/305 (3%)
Query: 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNG-SADNP- 102
S+ FD VF+ +C + +++ K + + G+NGTVFAYGQT +GK++TM G S D+P
Sbjct: 48 SFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPD 107
Query: 103 --GVISLGVKDIFDAI-QMMSNREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGV 159
GVI V+ IF +I +N E+ VRVSYMEIY E I DLLA +N L +HE GV
Sbjct: 108 GRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGV 167
Query: 160 FVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSS 219
+V GL E V+S ++V +++ G R TNMN SSRSH+IF + I K + S+
Sbjct: 168 YVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAK 227
Query: 220 TDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHI 279
+ L LVDLAGSE++ KTGA G L+E K INKSL ALG VIN L+DG + H+
Sbjct: 228 SGQ-----LFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDG--KSSHV 280
Query: 280 PYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEIL 339
PYRDSKLTRILQ +LGGN++T++I +P + ET TL+F RAK I N +VN L
Sbjct: 281 PYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAEL 340
Query: 340 TDAAL 344
+ A L
Sbjct: 341 SPAEL 345
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 256 bits (653), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 153/342 (44%), Positives = 205/342 (59%), Gaps = 19/342 (5%)
Query: 4 ICVAVRVRPPVSLETSGGVFWKVEDNRVSLHRQHDTP-VSGTSYAFDHVFEETCSNARVY 62
I V R RP E + G D V+ + DT ++ YAFD VF+ + S +VY
Sbjct: 9 IKVMCRFRPLNESEVNRG------DKYVAKFQGEDTVMIASKPYAFDRVFQSSTSQEQVY 62
Query: 63 ELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNP---GVISLGVKDIFDAIQMM 119
K I+ +EG+NGT+FAYGQTSSGK TM G +P G+I V+DIF+ I M
Sbjct: 63 NDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIYSM 122
Query: 120 S-NREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFVAGLREEIVNSAEQVLKL 178
N EF ++VSY EIY ++I DLL V L +HE +V G E V S ++V+
Sbjct: 123 DENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDT 182
Query: 179 IESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAGSER 238
I+ G+ NRH TNMN SSRSH+IF + ++ +++ T+ L LVDLAGSE+
Sbjct: 183 IDEGKSNRHVAVTNMNEHSSRSHSIFLINVK-----QENTQTEQKLSGKLYLVDLAGSEK 237
Query: 239 IAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNA 298
++KTGA+G L E K+INKSL ALGNVI+ L++G ++PYRDSK+TRILQ +LGGN
Sbjct: 238 VSKTGAEGAVLDEAKNINKSLSALGNVISALAEG---STYVPYRDSKMTRILQDSLGGNC 294
Query: 299 KTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILT 340
+T+I+ +P + ETK TL F RAK I N V VN LT
Sbjct: 295 RTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNVELT 336
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 251 bits (641), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 148/331 (44%), Positives = 200/331 (60%), Gaps = 19/331 (5%)
Query: 4 ICVAVRVRPPVSLETSGGVFWKVEDNRVSLHRQHDTPV-SGTSYAFDHVFEETCSNARVY 62
I V R RP E + G D ++ + DT V + YAFD VF+ + S +VY
Sbjct: 9 IKVMCRFRPLNESEVNRG------DKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVY 62
Query: 63 ELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNP---GVISLGVKDIFDAIQMM 119
K I+ +EG+NGT+FAYGQTSSGKT TM G +P G+I V+DIF+ I M
Sbjct: 63 NDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSM 122
Query: 120 S-NREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFVAGLREEIVNSAEQVLKL 178
N EF ++VSY EIY ++I DLL V L +HE +V G E V S ++V+
Sbjct: 123 DENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDT 182
Query: 179 IESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAGSER 238
I+ G+ NRH TNMN SSRSH+IF + ++ +++ T+ L LVDLAGSE+
Sbjct: 183 IDEGKSNRHVAVTNMNEHSSRSHSIFLINVK-----QENTQTEQKLSGKLYLVDLAGSEK 237
Query: 239 IAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNA 298
++KTGA+G L E K+INKSL ALGNVI+ L++G ++PYRDSK+TRILQ +LGGN
Sbjct: 238 VSKTGAEGAVLDEAKNINKSLSALGNVISALAEG---STYVPYRDSKMTRILQDSLGGNC 294
Query: 299 KTSIICTIAPEEDHIEETKGTLQFASRAKRI 329
+T+I+ +P + ETK TL F RAK I
Sbjct: 295 RTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/285 (43%), Positives = 187/285 (65%), Gaps = 4/285 (1%)
Query: 46 YAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVI 105
+ FD VF+ET + + V+E TK I+ + + G+N TV AYG T +GKT TM GSAD PGV+
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVM 133
Query: 106 SLGVKDIFDAIQMMSNREFL-VRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFVAGL 164
L + ++ + + + VSY+E+YNE+I DLL V + L + E + GV V GL
Sbjct: 134 YLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLL-VNSGPLAVREDTQKGVVVHGL 192
Query: 165 REEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIR 224
S+E++L L+++G NR T+MN SSRSH +F++ + + +D +S +R
Sbjct: 193 TLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYL--RQQDKTASINQNVR 250
Query: 225 VSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDS 284
++ ++L+DLAGSER + +GA G R EG +IN+SL+ALGNVIN L+D ++ HIPYR+S
Sbjct: 251 IAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNS 310
Query: 285 KLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRI 329
KLTR+L+ +LGGN +T +I ++P ++T TL++A+RAK I
Sbjct: 311 KLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 233 bits (595), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 149/376 (39%), Positives = 207/376 (55%), Gaps = 37/376 (9%)
Query: 2 EKICVAVRVRPPVSLETSGG----VFWKVEDNRVSLHRQHDTPVS-GTSYAFDHVFEETC 56
E + V R RP E + G + V+ +V+L P ++ FD V++ +
Sbjct: 21 EALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYDASS 80
Query: 57 SNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNP---GVISLGVKDIF 113
A +Y+ + +I + ++GFNGTVFAYGQT +GKT+TM G+ P GVI + IF
Sbjct: 81 KQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFEHIF 140
Query: 114 DAIQMMSNREFLVRVSYMEIYNEEINDLLAVE-NQKLQIHESLEHGVFVAGLREEIVNSA 172
I N+++LVR SY+EIY EEI DLL+ E ++L++ E+ E GV++ L + +
Sbjct: 141 THISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKDLSSFVTKNV 200
Query: 173 EQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVD 232
+++ ++ G R G T+MN SSRSH IF + +E + +D D IRV LNLVD
Sbjct: 201 KEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQ--DHIRVGKLNLVD 258
Query: 233 LAGSERIAKTG---ADGV---------------------RLKEGKHINKSLMALGNVINK 268
LAGSER K G A G R KE IN SL ALGNVI
Sbjct: 259 LAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAA 318
Query: 269 LSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKR 328
L+ + HIPYRDSKLTR+LQ +LGGNAKT ++ T+ P +E+ TL+FA+RAK
Sbjct: 319 LAG--NRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAKN 376
Query: 329 ITNCVQVNEILTDAAL 344
I N +VNE D L
Sbjct: 377 IKNKPRVNEDPKDTLL 392
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 202/348 (58%), Gaps = 24/348 (6%)
Query: 3 KICVAVRVRPPVSLETS--GGVFWKVEDNRVSLHRQHDTPVSGTS------YAFDHVF-- 52
K+ VAVR+RP ET V+ N+V L+ + G + +A+DH F
Sbjct: 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWS 61
Query: 53 ------EETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVIS 106
E+ V++ L ++I+ A +G+N +FAYGQT SGK++TM G+AD PG+I
Sbjct: 62 MDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIP 121
Query: 107 LGVKDIFDAIQMMSNRE--FLVRVSYMEIYNEEINDLLAVEN--QKLQIHESLEHGVFVA 162
+F+ Q N E F V VSYMEIYNE++ DLL + Q L++ E G +V
Sbjct: 122 RLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVD 181
Query: 163 GLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDA 222
GL + V S + + L+ G +R TNMN SSRSH +F++ + D S T
Sbjct: 182 GLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDV-KSGTSG 240
Query: 223 IRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSD---GVKQRGHI 279
+V L+LVDLAGSER KTGA G RLKEG +INKSL LG VI+ L+D G + +
Sbjct: 241 EKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFV 300
Query: 280 PYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAK 327
PYRDS LT +L+ +LGGN+KT+++ T++P D+ +ET TL++A RAK
Sbjct: 301 PYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/337 (41%), Positives = 193/337 (57%), Gaps = 22/337 (6%)
Query: 6 VAVRVRPPVSLETSGG--VFWKVEDN--RVSLHRQHDTPVSGTSYAFDHVFEETCSNARV 61
VA+RVRP + E G +VE RV+L R + F V E V
Sbjct: 15 VALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRH-------FGFHVVLAEDAGQEAV 67
Query: 62 YELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSA------DNPGVISLGVKDIFDA 115
Y+ + ++ A EGFN TVFAYGQT SGKT+TM ++ D G++ + + F
Sbjct: 68 YQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKL 127
Query: 116 IQMMSNREFLVRVSYMEIYNEEINDLLAV--ENQKLQIHESLEHGVFVAGLREEIVNSAE 173
I + LV VSY+E+Y EE DLL V ++ +Q+ E V + G++E V +
Sbjct: 128 IDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLD 187
Query: 174 QVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDA---IRVSVLNL 230
+VL L+E G RH G T++N SSRSHT+F + +E +G+ A + VS +
Sbjct: 188 EVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHF 247
Query: 231 VDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRIL 290
VDLAGSER+ KTG+ G RLKE IN SL+ALGNVI+ L D ++ HIPYRDSK+TRIL
Sbjct: 248 VDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRIL 307
Query: 291 QPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAK 327
+ +LGGNAKT +I ++P +ET TL +ASRA+
Sbjct: 308 KDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 228 bits (581), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 146/357 (40%), Positives = 210/357 (58%), Gaps = 25/357 (7%)
Query: 2 EKICVAVRVRPPVSLET---SGGVFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEETCSN 58
+ I V VRVRP S E S V V V D+ ++ + FD F
Sbjct: 23 QNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLT-KKFTFDRSFGPESKQ 81
Query: 59 ARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSA-----------DNPGVISL 107
VY ++ +I + G+N TVFAYGQT +GKT TM G+ + G+I
Sbjct: 82 CDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPR 141
Query: 108 GVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVENQ-KLQIHE-SLEHG-VFVAGL 164
+ +FD ++MM E+ +R+SY+E+YNEE+ DLL+ ++ K++I + S + G V + GL
Sbjct: 142 ALSHLFDELRMME-VEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGL 200
Query: 165 REEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIR 224
E V+S + V KL+E G+ R T MN +SSRSHT+F +V+ + +N D ++
Sbjct: 201 EEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIR--ENGIEGEDMLK 258
Query: 225 VSVLNLVDLAGSERIAKTGAD-GVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRD 283
+ LNLVDLAGSE ++K G + G+R++E +IN+SL+ LG VI L D + H+PYR+
Sbjct: 259 IGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD---RAPHVPYRE 315
Query: 284 SKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILT 340
SKLTR+LQ +LGG KTSII TI+P IEET TL++A RAK I N +VN+ LT
Sbjct: 316 SKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 219 bits (559), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 191/337 (56%), Gaps = 22/337 (6%)
Query: 6 VAVRVRPPVSLETSGG--VFWKVEDN--RVSLHRQHDTPVSGTSYAFDHVFEETCSNARV 61
VA+RVRP + E G +VE RV+L R + F V E V
Sbjct: 15 VALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRH-------FGFHVVLAEDAGQEAV 67
Query: 62 YELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSA------DNPGVISLGVKDIFDA 115
Y+ + ++ A EGFN TVFAYGQT SGKT+TM ++ D G++ + + F
Sbjct: 68 YQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKL 127
Query: 116 IQMMSNREFLVRVSYMEIYNEEINDLLAV--ENQKLQIHESLEHGVFVAGLREEIVNSAE 173
I + LV VSY+E+Y EE DLL V ++ +Q+ E V + G++E V +
Sbjct: 128 IDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLD 187
Query: 174 QVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDA---IRVSVLNL 230
+VL L+E G RH G T++N SSRSHT+F + ++ +G+ A + VS +
Sbjct: 188 EVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSKFHF 247
Query: 231 VDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRIL 290
VDLAGSER+ KTG+ G KE IN SL+ALGNVI+ L D ++ +IPYRDSK+TRIL
Sbjct: 248 VDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKITRIL 307
Query: 291 QPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAK 327
+ +LGGNAKT +I ++P +ET TL +ASRA+
Sbjct: 308 KDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 202/358 (56%), Gaps = 33/358 (9%)
Query: 4 ICVAVRVRPPVSLETSGGVFWKVEDNRVSLHRQHDTPVSG--------TSYAFDHVFEET 55
I V VRVRP E VE + V R+ + +G +Y FD VF +
Sbjct: 19 IQVVVRVRPFNLAERKASAHSIVESDPV---RKEVSVRTGGLADKSSRKTYTFDMVFGAS 75
Query: 56 CSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGS---------ADNP--GV 104
VY + I+ + G+N T+FAYGQT +GKTFTM G ++P G+
Sbjct: 76 TKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGI 135
Query: 105 ISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN---QKLQIHESL--EHGV 159
I + IF+ + + EF V+VS +EIYNEE+ DLL + ++LQ+ + + GV
Sbjct: 136 IPRTLHQIFEKL-TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 160 FVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSS 219
+ GL E V++ ++V +++E G R T MN SSRSH++F + I K D
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE- 253
Query: 220 TDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHI 279
+ +++ LNLVDLAGSE I ++GA R +E +IN+SL+ LG VI L V++ H+
Sbjct: 254 -ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL---VERTPHV 309
Query: 280 PYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNE 337
PYR+SKLTRILQ +LGG +TSII TI+P ++EET TL++A RAK I N +VN+
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 186/311 (59%), Gaps = 22/311 (7%)
Query: 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGS------ 98
+Y FD VF + VY + I+ + G+N T+FAYGQT +GKTFTM G
Sbjct: 65 TYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEE 124
Query: 99 ---ADNP--GVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN---QKLQ 150
++P G+I + IF+ + + EF V+VS +EIYNEE+ DLL + ++LQ
Sbjct: 125 YTWEEDPLAGIIPRTLHQIFEKL-TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 183
Query: 151 IHESL--EHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVI 208
+ + + GV + GL E V++ ++V +++E G R T MN SSRSH++F + I
Sbjct: 184 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 243
Query: 209 ESKGKDNDSSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINK 268
K D + +++ LNLVDLAGSE I ++GA R +E +IN+SL+ LG VI
Sbjct: 244 HMKETTIDGE--ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITA 301
Query: 269 LSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKR 328
L V++ H+PYR+SKLTRILQ +LGG +TSII TI+P ++EET TL++A RAK
Sbjct: 302 L---VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
Query: 329 ITNCVQVNEIL 339
I N +VN+ L
Sbjct: 359 ILNKPEVNQKL 369
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 185/309 (59%), Gaps = 22/309 (7%)
Query: 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGS------ 98
+Y FD VF + VY + I+ + G+N T+FAYGQT +GKTFTM G
Sbjct: 65 TYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEE 124
Query: 99 ---ADNP--GVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN---QKLQ 150
++P G+I + IF+ + + EF V+VS +EIYNEE+ DLL + ++LQ
Sbjct: 125 YTWEEDPLDGIIPRTLHQIFEKL-TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 183
Query: 151 IHESL--EHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVI 208
+ + + GV + GL E V++ ++V +++E G R T MN SSRSH++F + I
Sbjct: 184 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 243
Query: 209 ESKGKDNDSSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINK 268
K D + +++ LNLVDLAGSE I ++GA R +E +IN+SL+ LG VI
Sbjct: 244 HMKETTIDGE--ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITA 301
Query: 269 LSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKR 328
L V++ H+PYR+SKLTRILQ +LGG +TSII TI+P ++EET TL++A RAK
Sbjct: 302 L---VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
Query: 329 ITNCVQVNE 337
I N +VN+
Sbjct: 359 ILNKPEVNQ 367
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 185/309 (59%), Gaps = 22/309 (7%)
Query: 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGS------ 98
+Y FD VF + VY + I+ + G+N T+FAYGQT +GKTFTM G
Sbjct: 64 TYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEE 123
Query: 99 ---ADNP--GVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN---QKLQ 150
++P G+I + IF+ + + EF V+VS +EIYNEE+ DLL + ++LQ
Sbjct: 124 YTWEEDPLAGIIPRTLHQIFEKL-TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 182
Query: 151 IHESL--EHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVI 208
+ + + GV + GL E V++ ++V +++E G R T MN SSRSH++F + I
Sbjct: 183 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 242
Query: 209 ESKGKDNDSSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINK 268
K D + +++ LNLVDLAGSE I ++GA R +E +IN+SL+ LG VI
Sbjct: 243 HMKETTIDGE--ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITA 300
Query: 269 LSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKR 328
L V++ H+PYR+SKLTRILQ +LGG +TSII TI+P ++EET TL++A RAK
Sbjct: 301 L---VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 357
Query: 329 ITNCVQVNE 337
I N +VN+
Sbjct: 358 ILNKPEVNQ 366
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 185/309 (59%), Gaps = 22/309 (7%)
Query: 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGS------ 98
+Y FD VF + VY + I+ + G+N T+FAYGQT +GKTFTM G
Sbjct: 67 TYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEE 126
Query: 99 ---ADNP--GVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN---QKLQ 150
++P G+I + IF+ + + EF V+VS +EIYNEE+ DLL + ++LQ
Sbjct: 127 YTWEEDPLAGIIPRTLHQIFEKL-TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 185
Query: 151 IHESL--EHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVI 208
+ + + GV + GL E V++ ++V +++E G R T MN SSRSH++F + I
Sbjct: 186 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 245
Query: 209 ESKGKDNDSSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINK 268
K D + +++ LNLVDLAGSE I ++GA R +E +IN+SL+ LG VI
Sbjct: 246 HMKETTIDGE--ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITA 303
Query: 269 LSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKR 328
L V++ H+PYR+SKLTRILQ +LGG +TSII TI+P ++EET TL++A RAK
Sbjct: 304 L---VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 360
Query: 329 ITNCVQVNE 337
I N +VN+
Sbjct: 361 ILNKPEVNQ 369
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 185/309 (59%), Gaps = 22/309 (7%)
Query: 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGS------ 98
+Y FD VF + VY + I+ + G+N T+FAYGQT +GKTFTM G
Sbjct: 65 TYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEE 124
Query: 99 ---ADNP--GVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN---QKLQ 150
++P G+I + IF+ + + EF V+VS +EIYNEE+ DLL + ++LQ
Sbjct: 125 YTWEEDPLAGIIPRTLHQIFEKL-TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 183
Query: 151 IHESL--EHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVI 208
+ + + GV + GL E V++ ++V +++E G R T MN SSRSH++F + I
Sbjct: 184 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 243
Query: 209 ESKGKDNDSSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINK 268
K D + +++ LNLVDLAGSE I ++GA R +E +IN+SL+ LG VI
Sbjct: 244 HMKETTIDGE--ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITA 301
Query: 269 LSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKR 328
L V++ H+PYR+SKLTRILQ +LGG +TSII TI+P ++EET TL++A RAK
Sbjct: 302 L---VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
Query: 329 ITNCVQVNE 337
I N +VN+
Sbjct: 359 ILNKPEVNQ 367
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 213 bits (542), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 185/309 (59%), Gaps = 22/309 (7%)
Query: 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGS------ 98
+Y FD VF + VY + I+ + G+N T+FAYGQT +GKTFTM G
Sbjct: 56 TYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEE 115
Query: 99 ---ADNP--GVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN---QKLQ 150
++P G+I + IF+ + + EF V+VS +EIYNEE+ DLL + ++LQ
Sbjct: 116 YTWEEDPLAGIIPRTLHQIFEKL-TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 174
Query: 151 IHESL--EHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVI 208
+ + + GV + GL E V++ ++V +++E G R T MN SSRSH++F + I
Sbjct: 175 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 234
Query: 209 ESKGKDNDSSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINK 268
K D + +++ LNLVDLAGSE I ++GA R +E +IN+SL+ LG VI
Sbjct: 235 HMKETTIDGE--ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITA 292
Query: 269 LSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKR 328
L V++ H+PYR+SKLTRILQ +LGG +TSII TI+P ++EET TL++A RAK
Sbjct: 293 L---VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 349
Query: 329 ITNCVQVNE 337
I N +VN+
Sbjct: 350 ILNKPEVNQ 358
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 212 bits (539), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 182/309 (58%), Gaps = 22/309 (7%)
Query: 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADN--- 101
+Y FD VF + VY + I+ + G+N T+FAYGQT +GKTFTM G
Sbjct: 65 TYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEE 124
Query: 102 --------PGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN---QKLQ 150
G+I + IF+ + + EF V+VS +EIYNEE+ DLL + ++LQ
Sbjct: 125 YTWEEVPLAGIIPRTLHQIFEKL-TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 183
Query: 151 IHESL--EHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVI 208
+ + + GV + GL E V++ ++V +++E G R T MN SSRSH++F + I
Sbjct: 184 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 243
Query: 209 ESKGKDNDSSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINK 268
K D + +++ LNLVDLAGSE I ++GA R +E +IN+SL+ LG VI
Sbjct: 244 HMKETTIDGE--ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITA 301
Query: 269 LSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKR 328
L V++ H+PYR+SKLTRILQ +LGG +TSII TI+P ++EET TL++A RAK
Sbjct: 302 L---VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
Query: 329 ITNCVQVNE 337
I N +VN+
Sbjct: 359 ILNKPEVNQ 367
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 209 bits (533), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 199/336 (59%), Gaps = 23/336 (6%)
Query: 4 ICVAVRVRPPV-----SLETSGGVFWKVEDNRVSLHRQH-DTPVSGTSYAFDHVFEETCS 57
I V RVRP E + V + +D+ + +H H PVS + D VF S
Sbjct: 6 IRVIARVRPVTKEDGEGPEATNAVTFDADDDSI-IHLLHKGKPVS---FELDKVFSPQAS 61
Query: 58 NARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQ 117
V++ + + ++ + ++GFN +FAYGQT +GKT+TM G+A+NPG+ ++ +F +Q
Sbjct: 62 QQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQ 120
Query: 118 -MMSNREFLVRVSYMEIYNEEINDLLAVENQ-KLQIHESLEHG--VFVAGLREEIVNSAE 173
S+ E+ + VS EIYNE + DLL E Q KL+I + ++V GL E V S +
Sbjct: 121 EKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVD 180
Query: 174 QVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDL 233
+ K+ E G NR TN+N SSRSH + +++ +G D ST LNLVDL
Sbjct: 181 DINKVFEFGHTNRTTEFTNLNEHSSRSHAL--LIVTVRGVD---CSTGLRTTGKLNLVDL 235
Query: 234 AGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPA 293
AGSER+ K+GA+G RL+E +HINKSL ALG+VI L ++GH+P+R+SKLT +LQ +
Sbjct: 236 AGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALR---SRQGHVPFRNSKLTYLLQDS 292
Query: 294 LGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRI 329
L G++KT ++ ++P E + ET +L+FA R + +
Sbjct: 293 LSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 209 bits (532), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 125/303 (41%), Positives = 181/303 (59%), Gaps = 22/303 (7%)
Query: 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGS------ 98
+Y FD VF + VY + I+ + G+N T+FAYGQT +GKTFTM G
Sbjct: 50 TYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEE 109
Query: 99 ---ADNP--GVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN---QKLQ 150
++P G+I + IF+ + + EF V+VS +EIYNEE+ DLL + ++LQ
Sbjct: 110 YTWEEDPLAGIIPRTLHQIFEKLTD-NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 168
Query: 151 IHESL--EHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVI 208
+ + + GV + GL E V++ ++V +++E G R T MN SSRSH++F + I
Sbjct: 169 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 228
Query: 209 ESKGKDNDSSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINK 268
K D + +++ LNLVDLAGSE I ++GA R +E +IN+SL+ LG VI
Sbjct: 229 HMKETTIDGE--ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITA 286
Query: 269 LSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKR 328
L V++ H+PYR+SKLTRILQ +LGG +TSII TI+P ++EET TL++A RAK
Sbjct: 287 L---VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 343
Query: 329 ITN 331
I N
Sbjct: 344 ILN 346
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 206 bits (525), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 136/361 (37%), Positives = 202/361 (55%), Gaps = 25/361 (6%)
Query: 4 ICVAVRVRPPVSLETS--GGVFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEE------- 54
+ VAVRVRP S E S ++ + ++ + S++FD+ +
Sbjct: 22 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 81
Query: 55 -TCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSA--DNPGVISLGVKD 111
S +VY + ++++ A EG+N +FAYGQT +GK++TM G D G+I +D
Sbjct: 82 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 141
Query: 112 IFDAIQMMSN--REFLVRVSYMEIYNEEINDLLAVENQ-KLQIHESLEHGVFVAGLREEI 168
+F I +N + V VSYMEIY E + DLL +N+ L++ E G +V L +
Sbjct: 142 LFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLA 201
Query: 169 VNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVL 228
V S + L++SG R TNMN SSRSH +F ++ K D +++ T +VS +
Sbjct: 202 VTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE-KVSKI 260
Query: 229 NLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSD---------GVKQRGHI 279
+LVDLAGSER TGA G RLKEG +INKSL LG VI+ L++ K+ I
Sbjct: 261 SLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFI 320
Query: 280 PYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEIL 339
PYRDS LT +L+ LGGN++T+++ ++P + + +ET TL++A RAK+I N V VN L
Sbjct: 321 PYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNLEL 380
Query: 340 T 340
T
Sbjct: 381 T 381
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 205 bits (522), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 134/357 (37%), Positives = 200/357 (56%), Gaps = 25/357 (7%)
Query: 4 ICVAVRVRPPVSLETS--GGVFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEE------- 54
+ VAVRVRP S E S ++ + ++ + S++FD+ +
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 65
Query: 55 -TCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGS--ADNPGVISLGVKD 111
S +VY + ++++ A EG+N +FAYGQT +GK++TM G D G+I +D
Sbjct: 66 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 125
Query: 112 IFDAIQMMSN--REFLVRVSYMEIYNEEINDLLAVENQ-KLQIHESLEHGVFVAGLREEI 168
+F I +N + V VSYMEIY E + DLL +N+ L++ E G +V L +
Sbjct: 126 LFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLA 185
Query: 169 VNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVL 228
V S + L++SG R TNMN SSRSH +F ++ K D +++ T +VS +
Sbjct: 186 VTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE-KVSKI 244
Query: 229 NLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSD---------GVKQRGHI 279
+LVDLAGSER TGA G RLKEG +INKSL LG VI+ L++ K+ I
Sbjct: 245 SLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFI 304
Query: 280 PYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVN 336
PYRDS LT +L+ LGGN++T+++ ++P + + +ET TL++A RAK+I N V VN
Sbjct: 305 PYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 134/358 (37%), Positives = 200/358 (55%), Gaps = 25/358 (6%)
Query: 4 ICVAVRVRPPVSLETS--GGVFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEE------- 54
+ VAVRVRP S E S ++ + ++ + S++FD+ +
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 65
Query: 55 -TCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSA--DNPGVISLGVKD 111
S +VY + ++++ A EG+N +FAYGQT +GK++TM G D G+I +D
Sbjct: 66 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 125
Query: 112 IFDAIQMMSN--REFLVRVSYMEIYNEEINDLLAVENQ-KLQIHESLEHGVFVAGLREEI 168
+F I +N + V VSYMEIY E + DLL +N+ L++ E G +V L +
Sbjct: 126 LFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLA 185
Query: 169 VNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVL 228
V S + L++SG R TNMN SSRSH +F ++ K D +++ T +VS +
Sbjct: 186 VTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE-KVSKI 244
Query: 229 NLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSD---------GVKQRGHI 279
+LVDLAGSER TGA G RLKEG +INKSL LG VI+ L++ K+ I
Sbjct: 245 SLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFI 304
Query: 280 PYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNE 337
PYRDS LT +L+ LGGN++T+++ ++P + + +ET TL++A RAK+I N V VN
Sbjct: 305 PYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 134/358 (37%), Positives = 200/358 (55%), Gaps = 25/358 (6%)
Query: 4 ICVAVRVRPPVSLETS--GGVFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEE------- 54
+ VAVRVRP S E S ++ + ++ + S++FD+ +
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 65
Query: 55 -TCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSA--DNPGVISLGVKD 111
S +VY + ++++ A EG+N +FAYGQT +GK++TM G D G+I +D
Sbjct: 66 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 125
Query: 112 IFDAIQMMSN--REFLVRVSYMEIYNEEINDLLAVENQ-KLQIHESLEHGVFVAGLREEI 168
+F I +N + V VSYMEIY E + DLL +N+ L++ E G +V L +
Sbjct: 126 LFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLA 185
Query: 169 VNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVL 228
V S + L++SG R TNMN SSRSH +F ++ K D +++ T +VS +
Sbjct: 186 VTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE-KVSKI 244
Query: 229 NLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSD---------GVKQRGHI 279
+LVDLAGSER TGA G RLKEG +INKSL LG VI+ L++ K+ I
Sbjct: 245 SLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFI 304
Query: 280 PYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNE 337
PYRDS LT +L+ LGGN++T+++ ++P + + +ET TL++A RAK+I N V VN
Sbjct: 305 PYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 202 bits (514), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 177/290 (61%), Gaps = 13/290 (4%)
Query: 46 YAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVI 105
+ +D VF+ S ++E TK ++ +AV+G+N +FAYGQT SGKTFT+ G NPG+
Sbjct: 57 HIYDRVFDMRASQDDIFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLT 115
Query: 106 SLGVKDIFDAIQMMSNR-EFLVRVSYMEIYNEEINDLL---AVENQKLQIHESLEHGVFV 161
K++F+ ++ S R F ++ +E+Y + + DLL + KL+I + + VFV
Sbjct: 116 PRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFV 175
Query: 162 AGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTD 221
+ +++ E++ ++E G RH TNMN SSRSH I +VIES D +
Sbjct: 176 ENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESI----DLQTQS 231
Query: 222 AIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPY 281
A R L+ VDLAGSER+ K+G+ G +LKE + INKSL ALG+VI LS G + HIPY
Sbjct: 232 AAR-GKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQ---HIPY 287
Query: 282 RDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITN 331
R+ KLT ++ +LGGNAKT + ++P E +++ET +L +ASR + I N
Sbjct: 288 RNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVN 337
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 183/329 (55%), Gaps = 38/329 (11%)
Query: 45 SYAFDHVF-------EETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97
S+ FD F E + VY+ L ++ + EG++ +FAYGQT SGK++TM G
Sbjct: 97 SFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMG 156
Query: 98 SADNPGVISLGVKDIFDAIQM----MSNREFLVRVSYMEIYNEEINDLLA--VENQK--- 148
+ D PG+I +D+F I N + V+VSY E+YNE + DLLA V N+
Sbjct: 157 TPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYY 216
Query: 149 LQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVI 208
L++ ES G +V L E V E++++ + G+ +R T MN SSRSH +F +++
Sbjct: 217 LKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIML 276
Query: 209 ESKGKDNDSSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINK 268
+ D ++ T R S + LVDLAGSER T A G RL+EG +INKSL LG VI
Sbjct: 277 KQIHHDLETDDTTE-RSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAA 335
Query: 269 LSD----------GVKQ-RGH--------IPYRDSKLTRILQPALGGNAKTSIICTIAPE 309
L+D VK RG +PYRDS LT +L+ +LGGN+KT++I I+P
Sbjct: 336 LADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT 395
Query: 310 EDHIEETKGTLQFASRAKRITNCVQVNEI 338
+ +ET TL++A +AKRI VN++
Sbjct: 396 D--YDETLSTLRYADQAKRIRTRAVVNQV 422
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 195 bits (495), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 183/306 (59%), Gaps = 13/306 (4%)
Query: 46 YAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVI 105
+ +D VF+ + V+E TK ++ +AV+G+N +FAYGQT SGKTFT+ G+ NPG+
Sbjct: 49 HMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLT 107
Query: 106 SLGVKDIFDAIQMMSNR-EFLVRVSYMEIYNEEINDLL---AVENQKLQIHESLEHGVFV 161
+ ++F ++ SN+ F ++ +E+Y + + DLL + KL I + + V V
Sbjct: 108 PRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSV 167
Query: 162 AGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTD 221
+ +++ E++ +I+ G RH T MN +SSRSH I ++IES + T
Sbjct: 168 ENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIEST-----NLQTQ 222
Query: 222 AIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPY 281
AI L+ VDLAGSER+ K+G+ G +LKE + INKSL ALG+VI+ LS G + HIPY
Sbjct: 223 AIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQ---HIPY 279
Query: 282 RDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILTD 341
R+ KLT ++ +LGGNAKT + I+P E +++ET +L +ASR + I N N +
Sbjct: 280 RNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKE 339
Query: 342 AALLKR 347
A LK+
Sbjct: 340 VARLKK 345
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 193 bits (490), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 115/294 (39%), Positives = 166/294 (56%), Gaps = 16/294 (5%)
Query: 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADN--- 101
S+ D V + S VYE + KD++ A++G+NGT+ YGQT +GKT+TM G+ +N
Sbjct: 73 SFKLDGVLHD-ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKH 131
Query: 102 PGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAV------ENQKLQIHESL 155
G++ ++ +F I+ VRVSY+EIYNE + DLL+ + I E+
Sbjct: 132 RGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVEN- 190
Query: 156 EHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDN 215
GVF+ GL + + E L+ GE NR MN SSRSH IF + +E+ +
Sbjct: 191 PQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSR-- 248
Query: 216 DSSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQ 275
+ S + S +NLVDLAGSER+ K+G++G LKE +INKSL L I L D ++
Sbjct: 249 -TLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGD--QK 305
Query: 276 RGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRI 329
R HIP+R KLT L+ +LGGN ++ I E +EET +L+FASR K +
Sbjct: 306 RDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 193/330 (58%), Gaps = 22/330 (6%)
Query: 4 ICVAVRVRPPV-SLETSGGVFWKVEDNRV----SLHRQHDTPVSGTSYAFDHVFEETCSN 58
I V R+RPP+ S E W D S+ Q + + ++FD VF S
Sbjct: 55 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQ 114
Query: 59 ARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQM 118
+ ++E+++ +I +A++G+N +FAYGQT SGKT+TM+G ++ GVI V +FD+I+
Sbjct: 115 SDIFEMVSP-LIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 173
Query: 119 MSN--REFLVRVSYMEIYNEEINDLLAVENQKLQIH--ESLEHGVFVAGLREEIVNSAEQ 174
N E+ ++ +++EIYNE + DLL+ E + ++I ++ ++ ++V+ + EE V
Sbjct: 174 YRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNH 233
Query: 175 VLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLA 234
+ L+ + ++NR T N RSSRSH + ++ + + + I V +NLVDLA
Sbjct: 234 LRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE-----ISVGSINLVDLA 288
Query: 235 GSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPAL 294
GSE + R+ E K+IN+SL L NVI L ++++ HIPYR+SKLT +L P+L
Sbjct: 289 GSE----SPKTSTRMTETKNINRSLSELTNVILAL---LQKQDHIPYRNSKLTHLLMPSL 341
Query: 295 GGNAKTSIICTIAPEEDHIEETKGTLQFAS 324
GGN+KT + ++P +D +E+ +L+FA+
Sbjct: 342 GGNSKTLMFINVSPFQDCFQESVKSLRFAA 371
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 193/330 (58%), Gaps = 22/330 (6%)
Query: 4 ICVAVRVRPPV-SLETSGGVFWKVEDNRV----SLHRQHDTPVSGTSYAFDHVFEETCSN 58
I V R+RPP+ S E W D S+ Q + + ++FD VF S
Sbjct: 69 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQ 128
Query: 59 ARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQM 118
+ ++E+++ +I +A++G+N +FAYGQT SGKT+TM+G ++ GVI V +FD+I+
Sbjct: 129 SDIFEMVSP-LIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 187
Query: 119 MSN--REFLVRVSYMEIYNEEINDLLAVENQKLQIH--ESLEHGVFVAGLREEIVNSAEQ 174
N E+ ++ +++EIYNE + DLL+ E + ++I ++ ++ ++V+ + EE V
Sbjct: 188 YRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNH 247
Query: 175 VLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLA 234
+ L+ + ++NR T N RSSRSH + ++ + + + I V +NLVDLA
Sbjct: 248 LRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE-----ISVGSINLVDLA 302
Query: 235 GSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPAL 294
GSE + R+ E K+IN+SL L NVI L ++++ HIPYR+SKLT +L P+L
Sbjct: 303 GSE----SPKTSTRMTETKNINRSLSELTNVILAL---LQKQDHIPYRNSKLTHLLMPSL 355
Query: 295 GGNAKTSIICTIAPEEDHIEETKGTLQFAS 324
GGN+KT + ++P +D +E+ +L+FA+
Sbjct: 356 GGNSKTLMFINVSPFQDCFQESVKSLRFAA 385
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 194/332 (58%), Gaps = 22/332 (6%)
Query: 2 EKICVAVRVRPPV-SLETSGGVFWKVEDNRV----SLHRQHDTPVSGTSYAFDHVFEETC 56
+ I V R+RPP+ S E W D S+ Q + + ++FD VF
Sbjct: 59 DNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 118
Query: 57 SNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAI 116
S + ++E+++ +I +A++G+N +FAYGQT SGKT+TM+G ++ GVI V +FD+I
Sbjct: 119 SQSDIFEMVSP-LIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 177
Query: 117 QMMSN--REFLVRVSYMEIYNEEINDLLAVENQKLQIH--ESLEHGVFVAGLREEIVNSA 172
+ N E+ ++ +++EIYNE + DLL+ E + ++I ++ ++ ++V+ + EE V
Sbjct: 178 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 237
Query: 173 EQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVD 232
+ L+ + ++NR T N RSSRSH + ++ + + + I V +NLVD
Sbjct: 238 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE-----ISVGSINLVD 292
Query: 233 LAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQP 292
LAGSE + R+ E K+IN+SL L NVI L ++++ HIPYR+SKLT +L P
Sbjct: 293 LAGSE----SPKTSTRMTETKNINRSLSELTNVILAL---LQKQDHIPYRNSKLTHLLMP 345
Query: 293 ALGGNAKTSIICTIAPEEDHIEETKGTLQFAS 324
+LGGN+KT + ++P +D +E+ +L+FA+
Sbjct: 346 SLGGNSKTLMFINVSPFQDCFQESVKSLRFAA 377
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 189 bits (479), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 193/330 (58%), Gaps = 22/330 (6%)
Query: 4 ICVAVRVRPPV-SLETSGGVFWKVEDNRV----SLHRQHDTPVSGTSYAFDHVFEETCSN 58
I V R+RPP+ S E W D S+ Q + + ++FD VF S
Sbjct: 58 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQ 117
Query: 59 ARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQM 118
+ ++E+++ +I +A++G+N +FAYGQ+ SGKT+TM+G ++ GVI V +FD+I+
Sbjct: 118 SDIFEMVSP-LIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 176
Query: 119 MSN--REFLVRVSYMEIYNEEINDLLAVENQKLQIH--ESLEHGVFVAGLREEIVNSAEQ 174
N E+ ++ +++EIYNE + DLL+ E + ++I ++ ++ ++V+ + EE V
Sbjct: 177 YRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNH 236
Query: 175 VLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLA 234
+ L+ + ++NR T N RSSRSH + ++ + + + I V +NLVDLA
Sbjct: 237 LRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE-----ISVGSINLVDLA 291
Query: 235 GSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPAL 294
GSE + R+ E K+IN+SL L NVI L ++++ HIPYR+SKLT +L P+L
Sbjct: 292 GSE----SPKTSTRMTETKNINRSLSELTNVILAL---LQKQDHIPYRNSKLTHLLMPSL 344
Query: 295 GGNAKTSIICTIAPEEDHIEETKGTLQFAS 324
GGN+KT + ++P +D +E+ +L+FA+
Sbjct: 345 GGNSKTLMFINVSPFQDCFQESVKSLRFAA 374
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 192/330 (58%), Gaps = 22/330 (6%)
Query: 4 ICVAVRVRPPV-SLETSGGVFWKVEDNRV----SLHRQHDTPVSGTSYAFDHVFEETCSN 58
I V R+RPP+ S E W D S+ Q + + ++FD VF S
Sbjct: 58 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQ 117
Query: 59 ARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQM 118
+ ++E+++ +I +A++G+N +FAYGQT SGKT+TM+G ++ GVI V +FD+I+
Sbjct: 118 SDIFEMVSP-LIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 176
Query: 119 MSN--REFLVRVSYMEIYNEEINDLLAVENQKLQIH--ESLEHGVFVAGLREEIVNSAEQ 174
N E+ ++ +++EIYNE + DLL+ E + ++I ++ ++ ++V+ + EE V
Sbjct: 177 YRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNH 236
Query: 175 VLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLA 234
+ L+ + ++NR T N RSSRSH + ++ + + + I V +NLVDLA
Sbjct: 237 LRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE-----ISVGSINLVDLA 291
Query: 235 GSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPAL 294
GSE + R+ E K+I +SL L NVI L ++++ HIPYR+SKLT +L P+L
Sbjct: 292 GSE----SPKTSTRMTETKNIKRSLSELTNVILAL---LQKQDHIPYRNSKLTHLLMPSL 344
Query: 295 GGNAKTSIICTIAPEEDHIEETKGTLQFAS 324
GGN+KT + ++P +D +E+ +L+FA+
Sbjct: 345 GGNSKTLMFINVSPFQDCFQESVKSLRFAA 374
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 162/303 (53%), Gaps = 11/303 (3%)
Query: 46 YAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVI 105
Y FD + E + +Y + I+ +EG N +V AYG T +GKT TM GS + PGVI
Sbjct: 67 YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVI 126
Query: 106 SLGVKDIFDAI--QMMSNREFLVRV--SYMEIYNEEINDLLAVENQKLQIHESLEHGVFV 161
+ D+ + R + + V SY+EIY E++ DLL + L I E + +
Sbjct: 127 PRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILI 186
Query: 162 AGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTD 221
GL ++ ++S + NR G T +N RSSRSH + + ++ + + +
Sbjct: 187 PGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQR----ERLAPF 242
Query: 222 AIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPY 281
R L L+DLAGSE +TG G+RLKE IN SL LG V++ L+ G+ + +PY
Sbjct: 243 RQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPR---VPY 299
Query: 282 RDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILTD 341
RDSKLTR+LQ +LGG+A + +I IAPE +T L FA+R+K + N NE L
Sbjct: 300 RDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQP 359
Query: 342 AAL 344
AL
Sbjct: 360 HAL 362
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 179 bits (454), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 175/299 (58%), Gaps = 16/299 (5%)
Query: 33 LHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKT 92
+ R + S + FD +FE SN V+E L++ +I +++G N VFAYGQT SGKT
Sbjct: 419 ITRNINNNFSNLRFLFDKIFEREQSNDLVFEELSQ-LIQCSLDGTNVCVFAYGQTGSGKT 477
Query: 93 FTMNGSADNPGVISLGVKDIFDAIQMMSNR--EFLVRVSYMEIYNEEINDLLAVE---NQ 147
FTM+ + G+I L +K IF+ I+ + + + VR ++EIYNE I DLL + N
Sbjct: 478 FTMSHPTN--GMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNT 535
Query: 148 KLQI-HESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRM 206
K +I H+ + V + + S EQ + ++ R T N SSRSH+IF
Sbjct: 536 KYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIF-- 593
Query: 207 VIESKGKDNDSSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVI 266
+I+ +G + S T LNL+DLAGSER+ + A+G RLKE + INKSL LG+VI
Sbjct: 594 IIDLQGYN---SLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVI 650
Query: 267 NKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASR 325
+ L+ +K H+PYR+SKLT +L+ +LGGN+KT + I+P + ET +L+FA++
Sbjct: 651 HSLN--LKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATK 707
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/351 (35%), Positives = 186/351 (52%), Gaps = 40/351 (11%)
Query: 2 EKICVAVRVRP------------PVSLETSGGVFWKVEDNRVSLHRQHDTPVSGTSYAFD 49
+ICV VR RP +S+ + + +V L + + ++ FD
Sbjct: 51 HRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKY----LENQAFCFD 106
Query: 50 HVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM----NGSADNP--G 103
F+ET SN VY + ++ EG T FAYGQT SGKT TM +G A N G
Sbjct: 107 FAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKG 166
Query: 104 VISLGVKDIFDAIQMMSNREFL--VRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFV 161
+ ++ +D+F R+ V V++ EIYN ++ DLL + KL++ E + V V
Sbjct: 167 IYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN-KKAKLRVLEDGKQQVQV 225
Query: 162 AGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTD 221
GL+E +VNSA+ V+K+I+ G R G+T N SSRSH F++++ +KG+ + S
Sbjct: 226 VGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHGKFS-- 283
Query: 222 AIRVSVLNLVDLAGSERIAKT-GADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIP 280
LVDLAG+ER A T AD EG INKSL+AL I L + + H P
Sbjct: 284 --------LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALG---QNKAHTP 332
Query: 281 YRDSKLTRILQPA-LGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRIT 330
+R+SKLT++L+ + +G N++T +I TI+P E T TL++A R K ++
Sbjct: 333 FRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELS 383
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/344 (33%), Positives = 186/344 (54%), Gaps = 30/344 (8%)
Query: 4 ICVAVRVRPPVSLETSGGVFWKVED-------NRVSLHRQHDTPVSGTSYAFDHVFEETC 56
I V RVRPP+ E +E ++++R +S ++ FD +FE +
Sbjct: 7 IRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILS-YNFQFDMIFEPSH 65
Query: 57 SNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAI 116
+N ++E + + ++ ++++G+N +FAYGQT SGKT+TM + D G+I + + IF
Sbjct: 66 TNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD--GMIPMTLSHIFKWT 122
Query: 117 QMMSNR--EFLVRVSYMEIYNEEINDLL-----------AVENQKLQI-HESLEHGVFVA 162
+ R + + Y+EIYNE I DLL +++QK I H+ + G ++
Sbjct: 123 ANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYIT 182
Query: 163 GLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDA 222
+ + S QV +++ R T N RSSRSH++F + I + +S
Sbjct: 183 NVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGK 242
Query: 223 IRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYR 282
LNLVDLAGSERI + G RL+E ++INKSL LG+VI L+ + +IP+R
Sbjct: 243 -----LNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFR 297
Query: 283 DSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRA 326
+SKLT +LQ +L G++KT + I P+ +HI ET +L+FAS+
Sbjct: 298 NSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKV 341
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/344 (34%), Positives = 191/344 (55%), Gaps = 32/344 (9%)
Query: 4 ICVAVRVRPPVSLETSGGVFWKVE-------DNRVSLHRQHDTPVSGTSYAFDHVFEETC 56
I V R+RPP+ E KV+ D ++++R + + + FD +F++
Sbjct: 30 IRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINRGNSQVIP---FKFDKIFDQQE 86
Query: 57 SNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAI 116
+N +++ + + +I ++++G+N +FAYGQT SGKT+TM D G++ + IF I
Sbjct: 87 TNDEIFKEVGQ-LIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD--GIVPATINHIFSWI 143
Query: 117 QMMSNREFLVRVS--YMEIYNEEINDLL-----AVENQ------KLQI-HESLEHGVFVA 162
++ R + +VS ++EIYNE I DLL + EN K +I H+ ++
Sbjct: 144 DKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTYIT 203
Query: 163 GLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDA 222
+ +++S + V K+++ R T N SSRSH+IF + +E K + S
Sbjct: 204 NITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNEGTGEKSQ-- 261
Query: 223 IRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYR 282
+LNLVDLAGSER+ + G RL+E + INKSL LG+VI+ L+ Q+ HIP+R
Sbjct: 262 ---GILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFR 318
Query: 283 DSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRA 326
+SKLT +LQ +L G++KT + I+P H+ ET +L+FAS+
Sbjct: 319 NSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKV 362
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/346 (34%), Positives = 175/346 (50%), Gaps = 32/346 (9%)
Query: 3 KICVAVRVRPPVSLETSGGVFWKVEDNRVSLHRQHDTPVS--------GTSYAFDHVFEE 54
+ICV VR RP E + + L H+ + ++ FD F+E
Sbjct: 72 RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDE 131
Query: 55 TCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSAD------NPGVISLG 108
T SN VY + ++ EG T FAYGQT SGKT TM G + G+ ++
Sbjct: 132 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMA 191
Query: 109 VKDIF--DAIQMMSNREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFVAGLRE 166
+D+F N V V++ EIYN ++ DLL + KL++ E V V GL+E
Sbjct: 192 SRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN-KKAKLRVLEDSRQQVQVVGLQE 250
Query: 167 EIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVS 226
+V A+ V+K+I G R G+T N SSRSH F++++ +KG+ + S
Sbjct: 251 YLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFS------- 303
Query: 227 VLNLVDLAGSERIAKT-GADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSK 285
LVDLAG+ER A T AD EG INKSL+AL I L + + H P+R+SK
Sbjct: 304 ---LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALG---QNKAHTPFRESK 357
Query: 286 LTRILQPA-LGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRIT 330
LT++L+ + +G N++T +I I+P E T TL++A R K ++
Sbjct: 358 LTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 403
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/349 (34%), Positives = 181/349 (51%), Gaps = 40/349 (11%)
Query: 3 KICVAVRVRP------------PVSLETSGGVFWKVEDNRVSLHRQHDTPVSGTSYAFDH 50
+ICV VR RP +++ + V +V L R + ++ FD+
Sbjct: 90 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRY----LENQTFRFDY 145
Query: 51 VFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNG--SADN----PGV 104
F+++ N VY + ++ E T FAYGQT SGKT TM G S N G+
Sbjct: 146 AFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGI 205
Query: 105 ISLGVKDIFDAIQMMSNR--EFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFVA 162
+L +D+F ++ + + E V ++ EIY+ ++ DLL KL++ E + V V
Sbjct: 206 YALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLN-RKTKLRVLEDGKQQVQVV 264
Query: 163 GLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDA 222
GL+E V E VLKLI+ G R G+T+ N SSRSH +F++++ KGK + S
Sbjct: 265 GLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHGKFS--- 321
Query: 223 IRVSVLNLVDLAGSERIAKT-GADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPY 281
L+DLAG+ER A T AD EG INKSL+AL I L + + H P+
Sbjct: 322 -------LIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALG---RNKPHTPF 371
Query: 282 RDSKLTRILQPA-LGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRI 329
R SKLT++L+ + +G N++T +I TI+P E T TL++A+R K +
Sbjct: 372 RASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 120/342 (35%), Positives = 183/342 (53%), Gaps = 27/342 (7%)
Query: 4 ICVAVRVRPPV-SLETSGGVFWKVE--DNRVSLHRQHDTPVSGTS----YAFDHVFEETC 56
I V +R+RP + +LE S V D+ + T + T+ + FD +F++
Sbjct: 61 IRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 120
Query: 57 SNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAI 116
+N V++ + + ++ ++++G+N +FAYGQT SGKTFTM D G+I + IF+ I
Sbjct: 121 TNVDVFKEVGQ-LVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIFNWI 177
Query: 117 QMMSNR--EFLVRVSYMEIYNEEINDLLAVENQ---------KLQIHESLEHGVFVAGLR 165
+ + ++ V ++EIYNE I DLL +N K +I E
Sbjct: 178 NKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNV 237
Query: 166 EEI-VNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIR 224
+ + S E V +++ R T N SSRSH+IF +I G + + T A
Sbjct: 238 TSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF--IIHLSGSN---AKTGAHS 292
Query: 225 VSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDS 284
LNLVDLAGSERI + G RL+E ++INKSL ALG+VI+ L + HIP+R+S
Sbjct: 293 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNS 352
Query: 285 KLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRA 326
KLT +LQ +L G++KT + I+P HI ET +L+FAS+
Sbjct: 353 KLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 394
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 169 bits (428), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 160/296 (54%), Gaps = 24/296 (8%)
Query: 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSAD---- 100
++ FD F+ET SN VY + ++ EG T FAYGQT SGKT TM G
Sbjct: 50 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQ 109
Query: 101 --NPGVISLGVKDIFDAIQM--MSNREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLE 156
+ G+ ++ +D+F N V V++ EIYN ++ DLL + KL++ E
Sbjct: 110 NASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN-KKAKLRVLEDSR 168
Query: 157 HGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDND 216
V V GL+E +V A+ V+K+I G R G+T N SSRSH F++++ +KG+ +
Sbjct: 169 QQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHG 228
Query: 217 SSSTDAIRVSVLNLVDLAGSERIAKT-GADGVRLKEGKHINKSLMALGNVINKLSDGVKQ 275
S LVDLAG+ER A T AD EG INKSL+AL I L +
Sbjct: 229 KFS----------LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALG---QN 275
Query: 276 RGHIPYRDSKLTRILQPA-LGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRIT 330
+ H P+R+SKLT++L+ + +G N++T +I I+P E T TL++A R K ++
Sbjct: 276 KAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 331
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/353 (34%), Positives = 183/353 (51%), Gaps = 43/353 (12%)
Query: 1 MEKICVAVRVRPPV-SLETSGGVFWKVE--DNRVSLHRQHDTPVSGTS----YAFDHVFE 53
M I V R+RP + +LE S V D+ + T + T+ + FD +F+
Sbjct: 1 MGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFD 60
Query: 54 ETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIF 113
+ +N V++ + + ++ ++++G+N +FAYGQT SGKTFTM D G+I + IF
Sbjct: 61 QQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIF 117
Query: 114 DAIQMMSNR--EFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFVAGLREEI--- 168
+ I + + ++ V ++EIYNE I DLL +N + GL+ EI
Sbjct: 118 NWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTS--------IGLKHEIRHD 169
Query: 169 ---------------VNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGK 213
+ S E V +++ R T N SSRSH+IF +I G
Sbjct: 170 QETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF--IIHLSGS 227
Query: 214 DNDSSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGV 273
+ + T A LNLVDLAGSERI + G RL+E ++INKSL LG+VI+ L
Sbjct: 228 N---AKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD 284
Query: 274 KQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRA 326
+ HIP+R+SKLT +LQ +L G++KT + I+P HI ET +L+FAS+
Sbjct: 285 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 337
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 120/350 (34%), Positives = 182/350 (52%), Gaps = 43/350 (12%)
Query: 4 ICVAVRVRPPV-SLETSGGVFWKVE--DNRVSLHRQHDTPVSGTS----YAFDHVFEETC 56
I V R+RP + +LE S V D+ + T + T+ + FD +F++
Sbjct: 16 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 75
Query: 57 SNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAI 116
+N V++ + + ++ ++++G+N +FAYGQT SGKTFTM D G+I + IF+ I
Sbjct: 76 TNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIFNWI 132
Query: 117 QMMSNR--EFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFVAGLREEI------ 168
+ + ++ V ++EIYNE I DLL +N + GL+ EI
Sbjct: 133 NKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTS--------IGLKHEIRHDQET 184
Query: 169 ------------VNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDND 216
+ S E V +++ R T N SSRSH+IF +I G +
Sbjct: 185 KTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF--IIHLSGSN-- 240
Query: 217 SSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQR 276
+ T A LNLVDLAGSERI + G RL+E ++INKSL LG+VI+ L +
Sbjct: 241 -AKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTK 299
Query: 277 GHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRA 326
HIP+R+SKLT +LQ +L G++KT + I+P HI ET +L+FAS+
Sbjct: 300 RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 349
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/350 (34%), Positives = 181/350 (51%), Gaps = 43/350 (12%)
Query: 4 ICVAVRVRPPV-SLETSGGVFWKVE--DNRVSLHRQHDTPVSGTS----YAFDHVFEETC 56
I V R+RP + +LE S V D+ + T + T+ + FD +F++
Sbjct: 5 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 64
Query: 57 SNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAI 116
+N V++ + + ++ ++++G+N +FAYGQT SGKTFTM D G+I + IF+ I
Sbjct: 65 TNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIFNWI 121
Query: 117 QMMSNR--EFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFVAGLREEI------ 168
+ + ++ V ++EIYNE I DLL +N + GL+ EI
Sbjct: 122 NKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTS--------IGLKHEIRHDQET 173
Query: 169 ------------VNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDND 216
+ S E V +++ R T N SSRSH+IF +I G +
Sbjct: 174 KTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF--IIHLSGSN-- 229
Query: 217 SSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQR 276
+ T A LNLVDLAGS RI + G RL+E ++INKSL LG+VI+ L +
Sbjct: 230 -AKTGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTK 288
Query: 277 GHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRA 326
HIP+R+SKLT +LQ +L G++KT + I+P HI ET +L+FAS+
Sbjct: 289 RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 119/350 (34%), Positives = 181/350 (51%), Gaps = 43/350 (12%)
Query: 4 ICVAVRVRPPV-SLETSGGVFWKVE--DNRVSLHRQHDTPVSGTS----YAFDHVFEETC 56
I V R+RP + +LE S V D+ + T + T+ + FD +F++
Sbjct: 5 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 64
Query: 57 SNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAI 116
+N V++ + + ++ ++++G+N +FAYGQT SGKTFTM D G+I + IF+ I
Sbjct: 65 TNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIFNWI 121
Query: 117 QMMSNR--EFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFVAGLREEI------ 168
+ + ++ V ++EIYNE I DLL +N + GL+ EI
Sbjct: 122 NKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTS--------IGLKHEIRHDQET 173
Query: 169 ------------VNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDND 216
+ S E V +++ R T N SSRSH+IF +I G +
Sbjct: 174 KTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF--IIHLSGSN-- 229
Query: 217 SSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQR 276
+ T A LNLVDLAGSERI + G RL+E ++I KSL LG+VI+ L +
Sbjct: 230 -AKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTK 288
Query: 277 GHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRA 326
HIP+R+SKLT +LQ +L G++KT + I+P HI ET +L+FAS+
Sbjct: 289 RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 119/350 (34%), Positives = 181/350 (51%), Gaps = 43/350 (12%)
Query: 4 ICVAVRVRPPV-SLETSGGVFWKVE--DNRVSLHRQHDTPVSGTS----YAFDHVFEETC 56
I V R+RP + +LE S V D+ + T + T+ + FD +F++
Sbjct: 5 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 64
Query: 57 SNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAI 116
+N V++ + + ++ ++++G+N +FAYGQT SGKTFTM D G+I + IF+ I
Sbjct: 65 TNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIFNWI 121
Query: 117 QMMSNR--EFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFVAGLREEI------ 168
+ + ++ V ++EIYNE I DLL +N + GL+ EI
Sbjct: 122 NKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTS--------IGLKHEIRHDQET 173
Query: 169 ------------VNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDND 216
+ S E V +++ R T N SS SH+IF +I G +
Sbjct: 174 KTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIF--IIHLSGSN-- 229
Query: 217 SSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQR 276
+ T A LNLVDLAGSERI + G RL+E ++INKSL LG+VI+ L +
Sbjct: 230 -AKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTK 288
Query: 277 GHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRA 326
HIP+R+SKLT +LQ +L G++KT + I+P HI ET +L+FAS+
Sbjct: 289 RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 162/297 (54%), Gaps = 26/297 (8%)
Query: 46 YAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM-NGSADNP-- 102
++FD VF V+E + ++ +A++G+ +FAYGQT SGKTFTM G +P
Sbjct: 85 FSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQL 143
Query: 103 -GVISLGVKDIFDAIQMMSNREFLVR--VSYMEIYNEEINDLLAVENQKLQIHE------ 153
G+I ++ +F Q +S + + SY+EIYNE + DLLA +K Q E
Sbjct: 144 EGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRA 203
Query: 154 -SLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKG 212
+ V R V+ ++V L+ NR T N RSSRSH++F++ I
Sbjct: 204 GPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQI---- 259
Query: 213 KDNDSSSTDAIRVSVLNLVDLAGSERIAKTGADGV----RLKEGKHINKSLMALGNVINK 268
+ SS + L+LVDLAGSER+ A G RL+E + IN SL LG VI
Sbjct: 260 -SGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMA 318
Query: 269 LSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASR 325
LS+ + H+PYR+SKLT +LQ +LGG+AK + I+P E+++ E+ +L+FAS+
Sbjct: 319 LSN---KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASK 372
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 116/201 (57%), Gaps = 9/201 (4%)
Query: 43 GTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNP 102
G Y FD V + +VY K I+ +EG+NGT+FAYGQTSSGKT TM G +P
Sbjct: 43 GKPYVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDP 102
Query: 103 ---GVISLGVKDIFDAIQMMS-NREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHG 158
G+I DIFD I M N EF ++VSY EIY ++I DLL V L +HE
Sbjct: 103 QLMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRV 162
Query: 159 VFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSS 218
+V G E V+S E+V+ +I+ G+ NRH TNMN SSRSH+IF + I+ + + +
Sbjct: 163 PYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKK 222
Query: 219 STDAIRVSVLNLVDLAGSERI 239
+ L LVDLAGSE++
Sbjct: 223 LSGK-----LYLVDLAGSEKV 238
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 156/297 (52%), Gaps = 37/297 (12%)
Query: 46 YAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGS------A 99
+ FDH F T S +Y+ L ++ +EGF T AYGQT +GK+++M +
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 100 DNPGVISLGVKDIFDAI--QMMSNREFL-VRVSYMEIYNEEINDLLAVENQKLQIHESLE 156
++ G++ + DIF+ + + +N++ + V S++EIYNE+ DLL S
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLG----------STP 172
Query: 157 HGVFVAGLREEI----VNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKG 212
H VA + ++S + ++E G NR TNMN SSRSH I + ++SK
Sbjct: 173 HMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT 232
Query: 213 KDNDSSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDG 272
S +N+VDLAGSE + +TG +GV +EG +IN L+++ V+ ++ G
Sbjct: 233 HH-----------SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAG 281
Query: 273 VKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRI 329
IPYRDS LT +LQ +L + + + I+P + + ET TL+F + AK++
Sbjct: 282 ---HTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 154/295 (52%), Gaps = 37/295 (12%)
Query: 46 YAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGS------A 99
+ FDH F T S +Y+ L ++ +EGF T AYGQT +GK+++M +
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 100 DNPGVISLGVKDIFDAI--QMMSNREFL-VRVSYMEIYNEEINDLLAVENQKLQIHESLE 156
++ G++ + DIF+ + + +N++ + V S++EIYNE+ DLL S
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLG----------STP 172
Query: 157 HGVFVAGLREEI----VNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKG 212
H VA + ++S + ++E G NR TNMN SSRSH I + ++SK
Sbjct: 173 HMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT 232
Query: 213 KDNDSSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDG 272
S +N+VDLAGSE + +TG +GV +EG +IN L+++ V+ ++ G
Sbjct: 233 HH-----------SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAG 281
Query: 273 VKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAK 327
IPYRDS LT +LQ +L + + + I+P + + ET TL+F + AK
Sbjct: 282 ---HTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 158/296 (53%), Gaps = 32/296 (10%)
Query: 46 YAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTV---FAYGQTSSGKTFTMNGS---- 98
+ D VF++T N VYE K +I E NG V FAYGQT SGKT+TM GS
Sbjct: 52 FIVDKVFDDTVDNFTVYENTIKPLIIDLYE--NGCVCSCFAYGQTGSGKTYTMLGSQPYG 109
Query: 99 -ADNPGVISLGVKDIFDAIQMMS-NREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLE 156
+D PG+ DIF + + + + +S+ EIY ++ DLL QK ++ +LE
Sbjct: 110 QSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL----QKRKMVAALE 165
Query: 157 HG---VFVAGLR-EEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKG 212
+G V V L+ ++ E +LK+I+ G + R G + N SSRSH I + ++
Sbjct: 166 NGKKEVVVKDLKILRVLTKEELILKMID-GVLLRKIGVNSQNDESSRSHAILNIDLKDIN 224
Query: 213 KDNDSSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLK-EGKHINKSLMALGNVINKLSD 271
K+ + + +DLAGSER A T + + + +G +IN+SL+AL I +
Sbjct: 225 KNTS--------LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMD- 275
Query: 272 GVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAK 327
+ HIP+RDS+LT++L+ G +K+ +I I+P E+T TL+++SR K
Sbjct: 276 --SDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
Query: 252 GKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEED 311
K+INKSL ALGNVI+ L++G K H+PYRDSK+TRILQ +L GN +T+I+ +P
Sbjct: 1 AKNINKSLSALGNVISALAEGTKT--HVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVF 58
Query: 312 HIEETKGTLQFASRAKRITNCVQVNEILT 340
+ ETK TL F RAK I N V VN LT
Sbjct: 59 NEAETKSTLMFGQRAKTIKNTVSVNLELT 87
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Query: 256 NKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEE 315
NKSL ALGNVI+ L++G K H+PYRDSK+TRILQ +LGGN +T+I+ +P + E
Sbjct: 1 NKSLSALGNVISALAEGTKT--HVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAE 58
Query: 316 TKGTLQFASRAKRITNCVQVNEILT 340
TK TL F RAK I N V VN LT
Sbjct: 59 TKSTLMFGQRAKTIKNTVSVNLELT 83
>pdb|3OJF|A Chain A, Crystal Structure Of The Bacillus Cereus Enoyl-Acyl
Carrier Protein Reductase With Nadp+ And Indole
Naphthyridinone (Complex Form)
pdb|3OJF|D Chain D, Crystal Structure Of The Bacillus Cereus Enoyl-Acyl
Carrier Protein Reductase With Nadp+ And Indole
Naphthyridinone (Complex Form)
pdb|3OJF|B Chain B, Crystal Structure Of The Bacillus Cereus Enoyl-Acyl
Carrier Protein Reductase With Nadp+ And Indole
Naphthyridinone (Complex Form)
pdb|3OJF|C Chain C, Crystal Structure Of The Bacillus Cereus Enoyl-Acyl
Carrier Protein Reductase With Nadp+ And Indole
Naphthyridinone (Complex Form)
Length = 257
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 686 DNKQGKNS---PCSCNNKEEESTCWKEKLSSELNTIKEKYHGLE---KDLDLNNKFLETS 739
D +G+ S PC N EE + C+ E + E+ TI H + +D DL +F++TS
Sbjct: 53 DTLEGQESLVLPCDVTNDEELTACF-ETIKQEVGTIHGVAHCIAFANRD-DLKGEFVDTS 110
Query: 740 KEMYDSXXXXXXXXXXXXDSLLNKV-SESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEE 798
++ + KV +E LT+ E V+K+YN K +LE
Sbjct: 111 RDGFLLAQNISAFSLTAVAREAKKVMTEGGNILTLTYLGGERVVKNYNVMGVAKASLEAS 170
Query: 799 IKQFS 803
+K +
Sbjct: 171 VKYLA 175
>pdb|2QIO|A Chain A, X-Ray Structure Of Enoyl-Acyl Carrier Protein Reductase
From Bacillus Anthracis With Triclosan
pdb|2QIO|B Chain B, X-Ray Structure Of Enoyl-Acyl Carrier Protein Reductase
From Bacillus Anthracis With Triclosan
pdb|2QIO|C Chain C, X-Ray Structure Of Enoyl-Acyl Carrier Protein Reductase
From Bacillus Anthracis With Triclosan
pdb|2QIO|D Chain D, X-Ray Structure Of Enoyl-Acyl Carrier Protein Reductase
From Bacillus Anthracis With Triclosan
pdb|3OJE|A Chain A, Crystal Structure Of The Bacillus Cereus Enoyl-Acyl
Carrier Protein Reductase (Apo Form)
Length = 256
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 686 DNKQGKNS---PCSCNNKEEESTCWKEKLSSELNTIKEKYHGLE---KDLDLNNKFLETS 739
D +G+ S PC N EE + C+ E + E+ TI H + +D DL +F++TS
Sbjct: 53 DTLEGQESLVLPCDVTNDEELTACF-ETIKQEVGTIHGVAHCIAFANRD-DLKGEFVDTS 110
Query: 740 KEMYDSXXXXXXXXXXXXDSLLNKV-SESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEE 798
++ + KV +E LT+ E V+K+YN K +LE
Sbjct: 111 RDGFLLAQNISAFSLTAVAREAKKVMTEGGNILTLTYLGGERVVKNYNVMGVAKASLEAS 170
Query: 799 IKQFS 803
+K +
Sbjct: 171 VKYLA 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,265,497
Number of Sequences: 62578
Number of extensions: 887835
Number of successful extensions: 2305
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2024
Number of HSP's gapped (non-prelim): 77
length of query: 842
length of database: 14,973,337
effective HSP length: 107
effective length of query: 735
effective length of database: 8,277,491
effective search space: 6083955885
effective search space used: 6083955885
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)